RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11139
(460 letters)
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn
complex, rRNA processing, transferase; HET: ADP; 1.75A
{Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB:
1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Length = 282
Score = 232 bits (592), Expect = 1e-73
Identities = 63/221 (28%), Positives = 106/221 (47%), Gaps = 9/221 (4%)
Query: 1 DGYRLTNQGYDYLALKTLSSRKVIASFGNQIGVGKESNIYVVEDCDGNPLVLKLHRLGRT 60
+G T G +L L + + G +G GKES ++ V+K H++G T
Sbjct: 68 EGSTFTFIGLSLYSLHRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHT 127
Query: 61 CFRNLKEKRDYHAHRNKAGWLYLSRISATKEFAYMNALYDRGFPVPKPVDINRHCVIMEL 120
F+ +KEKRDY + L+ SA EF + L G VPK + V+MEL
Sbjct: 128 SFKKVKEKRDYGDLH----FSVLAIRSARNEFRALQKLQ--GLAVPKVYAWEGNAVLMEL 181
Query: 121 VKGDPLSRVSHVNNVEALYDELMDLIVRFANHGVIHGDFNEFNLMLQEDERPVVIDFPQM 180
+ L RV V N + + D +++ + +F + G++HGD +++N+++ E+ +IDFPQ
Sbjct: 182 IDAKELYRV-RVENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVSEE-GIWIIDFPQS 239
Query: 181 VSTSHPNAQTFFDRDVTCIKDFFRKRFGYTSNDLREDILDV 221
V + +RDV I +F + + D+ I +
Sbjct: 240 VEVGEEGWREILERDVRNIITYFSRTYRTEK-DINSAIDRI 279
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP,
manganese, transferase; HET: ADP; 1.89A {Archaeoglobus
fulgidus} PDB: 1zp9_A* 1ztf_A*
Length = 258
Score = 208 bits (531), Expect = 7e-65
Identities = 53/233 (22%), Positives = 103/233 (44%), Gaps = 17/233 (7%)
Query: 1 DGYRLTNQGYDYLALKTLSSRKVIASFGNQIGVGKESNIYVVE---DCDGNPLVLKLHRL 57
Y G L LS++ I + G I GKE+N++ + D + +K++R+
Sbjct: 25 KIYAEVLDGRTLKTLYKLSAKGYITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRI 84
Query: 58 GRTCFRNLKEKR--DYHAHRNKAGWLYLSRISATKEFAYMNALYDRGFPVPKPVDINRHC 115
+ F + E D + I KEF + + G VP+P ++
Sbjct: 85 ETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAKEAGVSVPQPYTYMKNV 144
Query: 116 VIMELVKGDPLSRVSHVN--------NVEALYDELMDLIVRFANH-GVIHGDFNEFNLML 166
++ME + D L + V +VE +++++++ + R ++H D +E+N+M
Sbjct: 145 LLMEFIGEDELPAPTLVELGRELKELDVEGIFNDVVENVKRLYQEAELVHADLSEYNIMY 204
Query: 167 QEDERPVVIDFPQMVSTSHPNAQTFFDRDVTCIKDFFRKR-FGYTSNDLREDI 218
++ ID Q V+ HP A+++ +RDV I FF K ++ +++
Sbjct: 205 --IDKVYFIDMGQAVTLRHPMAESYLERDVRNIIRFFSKYGVKADFEEMLKEV 255
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 66.8 bits (162), Expect = 8e-12
Identities = 80/509 (15%), Positives = 152/509 (29%), Gaps = 155/509 (30%)
Query: 13 LALKTLSSRKVIASFGNQI---GVGKESNIYVVEDCDGNPLVLK-LHRLGRTCFRNLKEK 68
+AL S KV +I + C+ VL+ L +L N +
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKN---------CNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 69 RDYHA---HRNKAGWLYLSRISATKEFAYMNAL------YDRGFPVPKPVDIN------- 112
D+ + R + L R+ +K Y N L + +++
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKP--YENCLLVLLNVQNAK--AWNAFNLSCKILLTT 272
Query: 113 RHCVIMELVKGDPLSRVSHVNNVEALY-DELMDLIVRFANHGVIHGDFNEFNLMLQEDER 171
R + + + + +S ++ L DE+ L++++ +
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR------------------ 314
Query: 172 PVVIDFPQMVSTSHPNAQTFF---DRDVTCIKDFFRKRFGYTSNDLREDILDVEVSASGF 228
D P+ V T++P + RD D ++ + L I E S
Sbjct: 315 --PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH---VNCDKLTTII---ESS---- 362
Query: 229 TKRMDKELLAQLGLDESDEELDSEDDTVEDKDEIENL---REQVDVTMN----LYNEGER 281
L L + E + + L + ++ + +
Sbjct: 363 --------LNVL-------------EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 282 KDSTSESIKPEVTSHSGSEEISSEDSRTNNSDVKSNPKESTRS-EDTVLKFVKNVELQKN 340
D + ++ + S V+ PKEST S L+ +E N
Sbjct: 402 SD---------------VMVVVNKLHKY--SLVEKQPKESTISIPSIYLELKVKLE---N 441
Query: 341 EGKVNEILDKNCVNCAVEKIN-PDELQNGDKNDIILDE---NRLGSNTKTSRDPSEE--- 393
E ++ + V+ N P + D LD+ + +G + K + E
Sbjct: 442 EYALHRSI--------VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI-EHPERMTL 492
Query: 394 ------DFNF---DIRSVTSASTIPPEVI---------RARVKKALEKRERTKVR--IRN 433
DF F IR ++A ++ + + K ER V +
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER-LVNAILDF 551
Query: 434 LAKGEASATSRKRRE--NRATIKESAGYY 460
L K E + K + A + E +
Sbjct: 552 LPKIEENLICSKYTDLLRIALMAEDEAIF 580
Score = 48.7 bits (115), Expect = 4e-06
Identities = 45/259 (17%), Positives = 85/259 (32%), Gaps = 58/259 (22%)
Query: 201 DFFRKRFGYTSNDLREDILDVEVSASGFTKRMD-KELLAQLGLDESDEELDSEDDTVEDK 259
DF Y D+ D F D K++ S EE+D + K
Sbjct: 8 DFETGEHQYQYKDILSVFED------AFVDNFDCKDVQDMPKSILSKEEID---HIIMSK 58
Query: 260 DEIENLR--------EQVDVTMNLYNEGERKDST--SESIKPEVTSHSGSEEI-SSEDSR 308
D + +Q ++ E R + IK E S + + R
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 309 TNNSDVKSNPKESTRSEDTVLKFVKNV--ELQKNE----------GK---VNEILDKNCV 353
N D + K + LK ++ EL+ + GK ++ C+
Sbjct: 119 LYN-DNQVFAKYNVSRLQPYLK-LRQALLELRPAKNVLIDGVLGSGKTWVALDV----CL 172
Query: 354 NCAVEKINPDE-----LQNGDKNDIILDE-NRLGSNTKTSRDPSEEDFNFDIRSVTSAST 407
+ V+ + L+N + + +L+ +L D N+ RS S++
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI---------DPNWTSRSDHSSNI 223
Query: 408 -IPPEVIRARVKKALEKRE 425
+ I+A +++ L+ +
Sbjct: 224 KLRIHSIQAELRRLLKSKP 242
Score = 35.6 bits (81), Expect = 0.039
Identities = 19/142 (13%), Positives = 40/142 (28%), Gaps = 23/142 (16%)
Query: 54 LHRLGRTCFRNLKEKRDYHAHRNKA-GWLY------LSRISATKEFAYMNALY-DRGFPV 105
LHR + K + Y L I + ++ D F
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504
Query: 106 PKPVDINRHCVIMELVKGDPLSRVS-----------HVNNVEALYDELMDLIVRFANHGV 154
K I RH G L+ + + E L + ++D + + + +
Sbjct: 505 QK---I-RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI 560
Query: 155 IHGDFNEFNLMLQEDERPVVID 176
+ + L ++ + +
Sbjct: 561 CSKYTDLLRIALMAEDEAIFEE 582
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase;
endopeptidase activity, protein kinase activity; HET:
TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A*
2vwb_A*
Length = 540
Score = 45.4 bits (108), Expect = 3e-05
Identities = 28/152 (18%), Positives = 61/152 (40%), Gaps = 21/152 (13%)
Query: 28 GNQIGVGKESNIYVVEDCDGNPLVLKLHRLGRTCFRNLKEKRDYHAHRNKAGWLYLSRIS 87
+ IG G E++I + +++K R+ + +R+ + + R
Sbjct: 341 EHLIGKGAEADIKR-DSYLDFDVIIK-ERVKKG-YRDERLDENIRKSRTAR--------- 388
Query: 88 ATKEFAYMNALYDRGFPVPKPVDINRH--CVIMELVKGDPLSRVSHVNNVEALYDELMDL 145
E Y+ + D G P P D++ ++M + G V + + + ++ ++
Sbjct: 389 ---EARYLALVKDFGIPAPYIFDVDLDNKRIMMSYINGKLAKDV--IEDNLDIAYKIGEI 443
Query: 146 IVRFANHGVIHGDFNEFNLMLQEDERPVVIDF 177
+ + + VIH D N + D+ +IDF
Sbjct: 444 VGKLHKNDVIHNDLTTSNFIF--DKDLYIIDF 473
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.7 bits (105), Expect = 6e-05
Identities = 82/476 (17%), Positives = 139/476 (29%), Gaps = 174/476 (36%)
Query: 19 SSRKVIASFGNQIGVGKESNIYVVEDCDGNPL-----VLK--LHRLGRTCFRNLKEKRDY 71
+ +++ F +G YV + + + VL L D
Sbjct: 56 TPAELVGKF---LG-------YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG----NDI 101
Query: 72 HAHRNKAGWLYLS---RISATKEF--AYMNALYDRGFPVPKPVDINRHCVIMELVKGDPL 126
HA A L + TKE Y+ A P K + L
Sbjct: 102 HA---LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN-------------SAL 145
Query: 127 SRVSHVN--------------NVEALYDEL-----------MDLIVRFANH----GVIHG 157
R V N + ++EL DLI A
Sbjct: 146 FR--AVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTL 203
Query: 158 DFNE-----FNLM--LQE-DERP-------VVIDFP--QMVSTSHPNAQTFFDRDVTCIK 200
D + N++ L+ P + I P ++ +H + VT
Sbjct: 204 DAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH-----YV---VTA-- 253
Query: 201 DFFRKRFGYTSNDLREDILDVEVSASGFTKRMDKELLAQLGLDESDEELDSEDDTVEDKD 260
K G+T +LR + G T + L+ + + E+D +
Sbjct: 254 ----KLLGFTPGELRSYL-------KGATGHS-QGLVTAVAIAETDSW----------ES 291
Query: 261 EIENLREQVDVTMNLYNEGERKDSTSESIKPEVTSHSGSEEISSEDSRTNNSDVKSNPKE 320
++R+ + V L+ G R E ++ EDS NN V S P
Sbjct: 292 FFVSVRKAITV---LFFIGVR--CY------EAYPNTSLPPSILEDSLENNEGVPS-PML 339
Query: 321 STR--SEDTVLKFVKNVELQKNEGKVNEILDKNCVNCAVEKINPDELQNGDKNDIILDEN 378
S +++ V +V K N L +++ L NG KN ++
Sbjct: 340 SISNLTQEQVQDYVN---------KTNSHLPAG------KQVEI-SLVNGAKNLVV---- 379
Query: 379 RLGSNTKTSRDPSE-EDFNFDIRSVTSASTIPPEVIRARVKKALEKRERTKVRIRN 433
S P N +R + P + ++R+ +R K++ N
Sbjct: 380 --------SGPPQSLYGLNLTLRKAKA----PSGLDQSRIP--FSER---KLKFSN 418
Score = 38.5 bits (89), Expect = 0.006
Identities = 26/180 (14%), Positives = 59/180 (32%), Gaps = 42/180 (23%)
Query: 264 NLREQVDVTMNLYNEGER-KDSTSESIKPEVT-SHSGSEEISSEDSRTNNSDVKSNPKE- 320
+L + V + + ++ ++ + PE T + +E ++ P E
Sbjct: 15 SLEHVLLVPTASFFIASQLQEQFNKIL-PEPTEGFAADDEPTT-------------PAEL 60
Query: 321 STRSEDTVLKFVKNVELQKNEGKVNEILDKNCVNCAVEKINPDELQNGDKNDIILDENRL 380
+ L +V ++ G+ +++L C+ L+ NDI + L
Sbjct: 61 VGK----FLGYVSSLVEPSKVGQFDQVL-NLCLTEFENCY----LEG---NDI----HAL 104
Query: 381 GSNTKTSRDPSEEDFNFDIRSVTSASTIPPEVIRARVKKALEKRERTKVRIRNLAKGEAS 440
+ D + I++ +A + + AL R + +G A
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL---------FRAVGEGNAQ 155
Score = 33.5 bits (76), Expect = 0.17
Identities = 37/257 (14%), Positives = 76/257 (29%), Gaps = 103/257 (40%)
Query: 209 YTSNDLREDILDVEVSASGFTKRMDKELLAQLGLDESD---------------------- 246
Y ++ +D+ + R D G D
Sbjct: 1636 YKTSKAAQDVWN----------RADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 247 EELDS--EDDTVEDKDEIENLREQVDVTMNLYN-EGERK--DST---------------- 285
E + + V+ K + E + ++++ Y E+ +T
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFE 1745
Query: 286 ---SESIKPEVTS---HS-G--------SEEISSED---------------------SRT 309
S+ + P + HS G ++ +S E R+
Sbjct: 1746 DLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRS 1805
Query: 310 NNSDVKSNPKE--STRSEDTVLKFVKNVELQKNEGKVNEILDKNCVN----CAVEKINPD 363
N + NP ++ S++ + V+ + K G + EI++ N N A + D
Sbjct: 1806 NYGMIAINPGRVAASFSQEALQYVVE--RVGKRTGWLVEIVNYNVENQQYVAAGDLRALD 1863
Query: 364 ELQNGDKNDIILDENRL 380
+ N +L+ +L
Sbjct: 1864 TVTN------VLNFIKL 1874
Score = 31.9 bits (72), Expect = 0.58
Identities = 16/108 (14%), Positives = 34/108 (31%), Gaps = 25/108 (23%)
Query: 98 LYDRGFPVPKPV--DINRHCV------IMELVKGDPLSRVSHVNNV--EALYDELMDLIV 147
LY + V + H I+++V +P++ H + + + +I
Sbjct: 1635 LYKT-SKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIF 1693
Query: 148 RFANHGVIHGD--FNEFNLMLQEDERPVVIDF--PQ--MVSTSHPNAQ 189
G + + F E +E F + + +T Q
Sbjct: 1694 ETIVDGKLKTEKIFKEI------NEHSTSYTFRSEKGLLSATQ--FTQ 1733
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant
methionine recycling, refol transferase; HET: SR1 ADP;
1.90A {Arabidopsis thaliana}
Length = 420
Score = 41.9 bits (97), Expect = 3e-04
Identities = 19/178 (10%), Positives = 51/178 (28%), Gaps = 16/178 (8%)
Query: 10 YDYLALKTLSSRKVIASFGNQIGVGKESNIYVVEDCDGNPLVLK--------LHRLGRTC 61
++ L+ + + + + + ++L+ L
Sbjct: 85 FEATTLRKHGNL-SPDHVPEVYHFDRTMALIGMRYLEPPHIILRKGLIAGIEYPFLADHM 143
Query: 62 FRNLKEKRDYHAHRNKAGWLYLSRISATKEFAYMNALYDRGFPVPKPVDINRHCVIMELV 121
+ + + + + ++ + L ++ + +
Sbjct: 144 SDYMAKTLFFTSLLYHDTTEHRRAVTEFCGNVELCRLTEQVVFSDPYRVSTFNRWTSPYL 203
Query: 122 KGDPLSRVSHVNNVEALYDELMDLIVRFANHG--VIHGDFNEFNLMLQEDERPVVIDF 177
D + AL E+ +L F +IHGD + ++M+ +D VID
Sbjct: 204 DDDAKAVRED----SALKLEIAELKSMFCERAQALIHGDLHTGSVMVTQDS-TQVIDP 256
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside
phosphotransferase, antibiotic resistance; HET: MES PG4;
1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A*
3q2m_A*
Length = 339
Score = 40.8 bits (95), Expect = 6e-04
Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 130 SHVNNVEALYDELMDLIVRFANH----GVIHGDFNEFNLMLQEDERPVVIDF 177
+ + L D L + + H D + N+++ +E +ID+
Sbjct: 180 QNSAAIHRLVDTSEKLSKKIQPDLDKYVLCHSDIHAGNVLVGNEESIYIIDW 231
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase,
structural genomics, PSI- protein structure initiative;
HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Length = 362
Score = 40.6 bits (95), Expect = 6e-04
Identities = 8/73 (10%), Positives = 19/73 (26%), Gaps = 14/73 (19%)
Query: 90 KEFAYMNALYDRGFPVPKPVDINRHC--------VIMELVKGDPLSRVSHVNNVEALYDE 141
K+ P+P+ +D I +G L + + A+
Sbjct: 80 KDRYVYRHFASAALPIPEVLD---IGEFSESLTYCISRRAQGVTLQDLP-ETELPAVLQP 135
Query: 142 LMDLIVRFANHGV 154
+ + +
Sbjct: 136 VAEAMDAI--AAA 146
Score = 27.9 bits (62), Expect = 6.5
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 128 RVSHVNNVEALYDELMDLIVRFAN-HGVIHGDFNEFNLMLQEDERPVVID 176
+ +V DELM ++H DF N++ VID
Sbjct: 188 DDTVSASVAQALDELMLWAEDCPEVRHLVHADFGSNNVLTDNGRITAVID 237
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase,
kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP:
d.144.1.6
Length = 264
Score = 40.4 bits (94), Expect = 7e-04
Identities = 15/65 (23%), Positives = 22/65 (33%)
Query: 113 RHCVIMELVKGDPLSRVSHVNNVEALYDELMDLIVRFANHGVIHGDFNEFNLMLQEDERP 172
R + LV D L L+ L + + V HGD N+M++
Sbjct: 145 RTRMEAGLVDQDDLDEEHQGLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFS 204
Query: 173 VVIDF 177
ID
Sbjct: 205 GFIDC 209
Score = 38.1 bits (88), Expect = 0.004
Identities = 15/123 (12%), Positives = 32/123 (26%), Gaps = 33/123 (26%)
Query: 36 ESNIYVVEDCDGNPLVLKLHRLGRTCFRNLKEKRDYHAHRNKAGWLYLSRISATKEFAYM 95
++ ++ + L +K G + E A +
Sbjct: 33 DAAVFRLSAQGRPVLFVKTDLSG-------------------------ALNELQDEAARL 67
Query: 96 NALYDRGFPVPKPV----DINRHCVIMELVKGDPLSRVSHVNNVEALYDELMDLIVRFAN 151
+ L G P + + R +++ V G L + D + R
Sbjct: 68 SWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLLSSHLAP--AEKVSIMADAMRRL-- 123
Query: 152 HGV 154
H +
Sbjct: 124 HTL 126
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural
genomics, PSI, protein structure initiative; 2.80A
{Escherichia coli} SCOP: d.144.1.6
Length = 328
Score = 38.2 bits (88), Expect = 0.004
Identities = 28/207 (13%), Positives = 54/207 (26%), Gaps = 89/207 (42%)
Query: 36 ESNIYVVEDCDGNPLVLKLHRLGRTCFRNLKEKRDYHAHRNKAGWLYLSRISATKEFAYM 95
E+ +Y +D D V+K +R R + E E +
Sbjct: 38 ENRVYQFQDEDRRRFVVKFYRPERWTADQILE-----------------------EHQFA 74
Query: 96 NALYDRGFPVPKPVDIN---------RHCVIMELVKGDP---------------LSRVSH 131
L + PV PV N + + V G L R+
Sbjct: 75 LQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQ 134
Query: 132 V--------------------------------NNVEALYDELMDLIVRFA--------N 151
+ ++A + + D ++
Sbjct: 135 TGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAVTAHWREDFT 194
Query: 152 HGVIHGDFNEFNLMLQEDERPVVIDFP 178
+HGD + N++ ++ P+ +D
Sbjct: 195 VLRLHGDCHAGNILWRDG--PMFVDLD 219
>4fev_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine,
PP1, protein kinase inhibitor; HET: KAN PP1; 1.89A
{Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A*
4ej7_A* 3r78_A*
Length = 272
Score = 37.3 bits (86), Expect = 0.006
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 135 VEALYDELMDLIVRFANHGVIHGDFNEFNLMLQEDERPVVIDF 177
VE ++ E+ L+ + V HGDF+ NL+ E + ID
Sbjct: 176 VEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDV 218
Score = 33.1 bits (75), Expect = 0.16
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 9/73 (12%)
Query: 88 ATKEFAYMNALYDRGFPVPKPV----DINRHCVIMELVKGDPLSRV--SHVNNVEALYDE 141
T E +N L P+P + ++ + G +V + ++ E + D
Sbjct: 66 VTDEMVRLNWL-TAFMPLPTIKHFIRTPDDAWLLTTAIPGKTAFQVLEEYPDSGENIVDA 124
Query: 142 LMDLIVRFANHGV 154
L + R H +
Sbjct: 125 LAVFLRRL--HSI 135
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics,
joint center for structural genomics, JCSG, protein
structure initiative; 1.85A {Thermobifida fusca} PDB:
3f7w_A
Length = 288
Score = 36.6 bits (84), Expect = 0.013
Identities = 24/116 (20%), Positives = 37/116 (31%), Gaps = 25/116 (21%)
Query: 14 ALKTLSSRKVIASFGNQIGVGKESNIYVVEDCDGNPLVLKLHRLGRTCFRNLKEKRDYHA 73
+ L+ R+V A + G ++Y VE DG PL +K L
Sbjct: 8 RVTELTGREVAAV--AERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRA----- 60
Query: 74 HRNKAGWLYLSRISATKEFAYMNALYD-RGFPVPKPVDINRHCVIMELVKGDPLSR 128
E ++ L G PVP+ + + ME V P +
Sbjct: 61 -----------------EALGLDWLGRSFGSPVPQVAGWDDRTLAMEWVDERPPTP 99
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold,
structural genomics, joint center structural genomics,
JCSG; 2.32A {Ralstonia eutropha JMP134}
Length = 359
Score = 36.2 bits (84), Expect = 0.016
Identities = 24/85 (28%), Positives = 30/85 (35%), Gaps = 16/85 (18%)
Query: 91 EFAYMNALYDRGFPVPKPVD-------INRHCVIMELVKG----DPLSRVSHVNNVEALY 139
E+ M+AL PV K I R IME V G D A+Y
Sbjct: 86 EYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIMEFVSGRVLWDQSLPGMSPAERTAIY 145
Query: 140 DELMDLIVRFANHGVIHGDFNEFNL 164
DE+ +I H V D+ L
Sbjct: 146 DEMNRVIAAM--HTV---DYQAIGL 165
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase,
aminoglycoside, phosphorylation, transferase-antibiotic
complex; HET: TOY; 1.80A {Enterococcus casseliflavus}
PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A*
3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A*
4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Length = 304
Score = 36.3 bits (84), Expect = 0.017
Identities = 10/77 (12%), Positives = 24/77 (31%), Gaps = 14/77 (18%)
Query: 90 KEFAYMNALYDR-GFPVPKPV-------DINRHCVIMELVKGDPLSRVS----HVNNVEA 137
E + ++++ P+P+ V +KG PL+ + +
Sbjct: 59 NEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKIKGVPLTPLLLNNLPKQSQNQ 118
Query: 138 LYDELMDLIVRFANHGV 154
+L + H +
Sbjct: 119 AAKDLARFLSEL--HSI 133
Score = 29.0 bits (65), Expect = 3.0
Identities = 10/57 (17%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 124 DPLSRVSHVNNVEALYDELMDLIVRFANHGV-IHGDFNEFNLMLQEDERPV--VIDF 177
+ + V+ Y ++++ + F + IH DF+ +++ ++ + +IDF
Sbjct: 162 SRELKGPQMKKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDF 218
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.7 bits (79), Expect = 0.035
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 7/55 (12%)
Query: 410 PEVIR-------ARVKKALEKRERTKVRIRNLAKGEASATSRKRRENRATIKESA 457
PE IR R+++ + + R AK + ++++ E K +
Sbjct: 84 PESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINN 138
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition,
kinase-INH complex, rubredoxin fold, TPR domain,
transferase; HET: AXX; 2.40A {Mycobacterium
tuberculosis}
Length = 681
Score = 35.6 bits (82), Expect = 0.039
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 13/69 (18%)
Query: 117 IMELVKGDPLSRVSHVNNVEAL-YDELMDLIVRFAN-------HGVIHGDFNEFNLMLQE 168
+ME V G L R + L E + ++ G+++ D N+ML E
Sbjct: 162 VMEYVGGQSLKRSKG----QKLPVAEAIAYLLEILPALSYLHSIGLVYNDLKPENIMLTE 217
Query: 169 DERPVVIDF 177
+ + +ID
Sbjct: 218 E-QLKLIDL 225
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB
structural genomics consortium, TBSG fold, FHAA,
transferase; 2.26A {Mycobacterium tuberculosis} PDB:
3oun_B* 3otv_A 3ouk_A
Length = 286
Score = 34.7 bits (80), Expect = 0.042
Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 112 NRHCVIMELVKGDPLSRV--SHVNNVEALYDELMDLI---VRFA-NHGVIHGDFNEFNLM 165
V+ E ++G L V + + V A+ M + A GV + +
Sbjct: 104 AGGLVVAEWIRGGSLQEVADTSPSPVGAI--RAMQSLAAAADAAHRAGVALSIDHPSRVR 161
Query: 166 LQEDERPVVIDFPQMVSTSHP 186
+ D VV+ +P + ++P
Sbjct: 162 VSIDGD-VVLAYPATMPDANP 181
>2q83_A YTAA protein; 2635576, structural genomics, joint center for
structu genomics, JCSG, protein structure initiative,
PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus
subtilis}
Length = 346
Score = 34.2 bits (78), Expect = 0.073
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 151 NHGVIHGDFNEFNLMLQEDERPVVIDF 177
+ + H D+ N +L E+E+ VID
Sbjct: 221 SPNLCHQDYGTGNTLLGENEQIWVIDL 247
Score = 28.8 bits (64), Expect = 4.2
Identities = 7/47 (14%), Positives = 15/47 (31%), Gaps = 10/47 (21%)
Query: 91 EFAYMNALYDRGFPVPKPV----------DINRHCVIMELVKGDPLS 127
+ L +G VP + + V+ + ++G P
Sbjct: 73 SIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYDWIEGRPFE 119
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex,
transferase; HET: CPS ADP; 2.00A {Bacillus subtilis}
SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A*
2pup_A*
Length = 397
Score = 34.2 bits (77), Expect = 0.079
Identities = 27/162 (16%), Positives = 46/162 (28%), Gaps = 18/162 (11%)
Query: 29 NQIGVGKESNIYVVEDCDGNPLVLKLHRLGRTCFRNLKEKRDYHAHRNKAGWLYLSRISA 88
E + V+ED ++ R + H + L S
Sbjct: 101 RVFYSDTEMAVTVMEDLSH-------LKIARKGLIEGENYPHLSQHIGEFLGKTLFYSSD 153
Query: 89 TKEFAYMNALYDRGFPVPKPVDINRHCVIMELVKGDPLSR--------VSHVNNVEALYD 140
+ + F P+ DI V + + V + N +++
Sbjct: 154 YALEPKVKKQLVKQFTNPELCDITERLVFTDPFFDHDTNDFEEELRPFVEKLWNNDSVKI 213
Query: 141 ELMDLIVRFANHG--VIHGDFNEFNLMLQEDERPVVIDFPQM 180
E L F +IHGD + ++ E E VID
Sbjct: 214 EAAKLKKSFLTSAETLIHGDLHTGSIFASEHE-TKVIDPEFA 254
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase,
phosphorylation, transferase-antibiotic COMP; HET: ANP
B31; 2.10A {Enterococcus faecalis} PDB: 2b0q_A* 1l8t_A*
3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Length = 263
Score = 33.8 bits (77), Expect = 0.080
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 135 VEALYDELMDLIVRFANHGVIHGDFNEFNLMLQEDERPVVIDF 177
LYD L HGD + N+ +++ + ID
Sbjct: 167 PRELYDFLKTEKPE-EELVFSHGDLGDSNIFVKDGKVSGFIDL 208
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A
{Mycobacterium tuberculosis}
Length = 309
Score = 33.8 bits (78), Expect = 0.11
Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 16/89 (17%)
Query: 97 ALYDRGFPVPKPVDINRHCVIMELVKGDPLSRVSHVNNVEAL-YDELMDLIVRFAN---- 151
++D G + V M L+ G L+ + + L + ++ + +
Sbjct: 98 PIHDFG------EIDGQLYVDMRLINGVDLAAM--LRRQGPLAPPRAVAIVRQIGSALDA 149
Query: 152 ---HGVIHGDFNEFNLMLQEDERPVVIDF 177
G H D N+++ D+ ++DF
Sbjct: 150 AHAAGATHRDVKPENILVSADDFAYLVDF 178
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat,
ATP-binding, cell junction, cell membrane,
integrin-binding protein, membrane, nucleotide- binding;
1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A*
Length = 271
Score = 33.4 bits (77), Expect = 0.13
Identities = 11/79 (13%), Positives = 20/79 (25%), Gaps = 16/79 (20%)
Query: 112 NRHCVIMELVKGDPLSRVSHVNNVEALYDELMDLIVRFA-------------NHGVIHGD 158
+I + L V H + V+FA +
Sbjct: 82 PHPTLITHWMPYGSLYNVLHEGTNFVVD---QSQAVKFALDMARGMAFLHTLEPLIPRHA 138
Query: 159 FNEFNLMLQEDERPVVIDF 177
N ++M+ ED +
Sbjct: 139 LNSRSVMIDEDMTARISMA 157
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for
structural genomics of infec diseases, csgid; HET: MSE
ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A*
4dca_A* 3hav_A* 3ham_A*
Length = 320
Score = 33.2 bits (75), Expect = 0.16
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 90 KEFAYMNALYDRG--FPVPKPVDINRHCVIMELVKGDPLSRVSHVNNVEALYDELMDLIV 147
+E L + + +P V + IM+ +KG+ ++ + E D L
Sbjct: 76 RELELYRFLENCKLSYQIPAVVYQSDRFNIMKYIKGERITYEQYHKLSEKEKDALAYDEA 135
Query: 148 RF 149
F
Sbjct: 136 TF 137
Score = 31.7 bits (71), Expect = 0.49
Identities = 24/148 (16%), Positives = 55/148 (37%), Gaps = 15/148 (10%)
Query: 33 VGKESNIYVVEDCDGNPLVLKLHRLGRTCFRNLKEKRDYHAHRNKAGWLY-LSRISATKE 91
V + +++ G + + L EK ++A +L L I
Sbjct: 97 VYQSDRFNIMKYIKGERI-------TYEQYHKLSEKEKDALAYDEATFLKELHSIEIDCS 149
Query: 92 FAYMNALYDRGFPVPKPVD-INRHCVIMELVKGDPLSRVSHVNNVEALYDELMDLIVRFA 150
V K + +++ +++ + L + ++E +Y+ ++ V F
Sbjct: 150 -----VSLFSDALVNKKDKFLQDKKLLISILEKEQLLTDEMLEHIETIYENILSNAVLFK 204
Query: 151 N-HGVIHGDFNEFNLMLQEDERPVVIDF 177
++H DF+ N++ + + VIDF
Sbjct: 205 YTPCLVHNDFSANNMIFRNNRLFGVIDF 232
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase,
alternative splicing, ATP-binding, chromosome partition,
differentiation, mRNA processing; 1.73A {Homo sapiens}
PDB: 1wbp_A* 3beg_A* 2x7g_A*
Length = 397
Score = 33.0 bits (75), Expect = 0.18
Identities = 20/133 (15%), Positives = 43/133 (32%), Gaps = 11/133 (8%)
Query: 113 RH-CVIMELVKGDPLSRVSHVNNVEALYDELMDLIVRF---------ANHGVIHGDFNEF 162
H C++ E++ G L + +N + L + I++ +IH D
Sbjct: 118 THICMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPE 176
Query: 163 NLMLQEDERPVVIDFPQMVSTSHPNAQTFFDRDVTCIKDFFRKRFGYTSNDLREDILDVE 222
N++L +E+ + + A V+ + L V+
Sbjct: 177 NILLSVNEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVK 236
Query: 223 VSASGFTKRMDKE 235
++ G + K
Sbjct: 237 IADLGNACWVHKH 249
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural
genomics, structural genomics consortium, SGC; 1.80A
{Toxoplasma gondii}
Length = 413
Score = 32.3 bits (73), Expect = 0.32
Identities = 16/184 (8%), Positives = 46/184 (25%), Gaps = 23/184 (12%)
Query: 17 TLSSRKVIASFGNQIGVGKESNIYVVED-CDGNPLVLKLHRLGRTCFRNLKEK------- 68
L R G +G D G + + N ++
Sbjct: 72 ELGERPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLR 131
Query: 69 -RDYHAHRNKAGWLYLSRISATKEFAYMNALYD--RGFPVPKPVDINRHCVIMELVKGDP 125
R +N+ R + R + + + + ++ +
Sbjct: 132 LRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNL 191
Query: 126 LSRVSHVNNVEALYDELMDLIVRFA------------NHGVIHGDFNEFNLMLQEDERPV 173
+ + + + + L+ ++G++H +++L +
Sbjct: 192 QTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQRGGVF 251
Query: 174 VIDF 177
+ F
Sbjct: 252 LTGF 255
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2,
phosphorylation, transferase; HET: STU; 2.50A
{Arabidopsis thaliana} PDB: 3ppz_A*
Length = 309
Score = 31.9 bits (73), Expect = 0.38
Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 15/78 (19%)
Query: 113 RHCVIMELVKGDPLSRVSHVNNVEALYDELMDLIVRFA-------------NHGVIHGDF 159
++ E + L R+ H + D + A N ++H +
Sbjct: 108 NLSIVTEYLSRGSLYRLLHKSGAREQLD--ERRRLSMAYDVAKGMNYLHNRNPPIVHRNL 165
Query: 160 NEFNLMLQEDERPVVIDF 177
NL++ + V DF
Sbjct: 166 KSPNLLVDKKYTVKVCDF 183
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase
activator complex; HET: ADN; 2.00A {Homo sapiens}
Length = 307
Score = 31.5 bits (72), Expect = 0.52
Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 17/78 (21%)
Query: 115 CVIMELVKGDPLSRVSHVNNVEALYDELMDLIVRFA--------------NHGVIHGDFN 160
C++ME +G L V H Y + + +IH D
Sbjct: 75 CLVMEYAEGGSLYNVLHGAEPLPYYT--AAHAMSWCLQCSQGVAYLHSMQPKALIHRDLK 132
Query: 161 EFNLMLQEDERPV-VIDF 177
NL+L + + DF
Sbjct: 133 PPNLLLVAGGTVLKICDF 150
>3i3f_A Hypothetical protein; structural genomics, niaid, decode,
infectious seattle structural genomics center for
infectious disease, unknown function; 1.35A {Giardia
lamblia}
Length = 141
Score = 30.4 bits (69), Expect = 0.55
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 82 YLSRISATKEFAYMNALYDRGF--PVPKPVDINRHCVIMELVKG 123
+LS + E A N LY F P +P R CV +L +G
Sbjct: 88 FLSTSLSDSEEARFNELYREVFCVPATRPC---RCCVRAQLQEG 128
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma
gondii} PDB: 3q5z_A*
Length = 371
Score = 31.2 bits (70), Expect = 0.74
Identities = 28/183 (15%), Positives = 57/183 (31%), Gaps = 22/183 (12%)
Query: 17 TLSSRKVIASFGNQIGVGKESNIYVVEDCD-GNPLVLKLHRLGRTC-------FRNLKEK 68
LS + + VG S +++V D + LK+ +G
Sbjct: 56 LLSQGERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFA 115
Query: 69 RDYHAHRNKAGWLYLSRISATKEFAYMNAL--YDRGFPVPKPVDINRHCVIMELVKGDPL 126
+ R+ + + + + + P + + ++M D
Sbjct: 116 AARLLGESPEEARDRRRLLLPSDAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAASVDLE 175
Query: 127 SRVSHVNNVEA------------LYDELMDLIVRFANHGVIHGDFNEFNLMLQEDERPVV 174
S ++ V L +L+ L + G++HG F NL + D R ++
Sbjct: 176 LLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQSKGLVHGHFTPDNLFIMPDGRLML 235
Query: 175 IDF 177
D
Sbjct: 236 GDV 238
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural
genomics consortium, TBSG domain, signal transduction;
HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB:
3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A*
3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Length = 311
Score = 31.1 bits (71), Expect = 0.77
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 12/89 (13%)
Query: 97 ALYDRGFPVPKPVDINRHCVIMELVKGDPLSRV----SHVNNVEALYDELMDLIVR---F 149
A+YD G + ++ME V G L + + A+ E++ + F
Sbjct: 76 AVYDTGEAETPAGPL--PYIVMEYVDGVTLRDIVHTEGPMTPKRAI--EVIADACQALNF 131
Query: 150 A-NHGVIHGDFNEFNLMLQEDERPVVIDF 177
+ +G+IH D N+M+ V+DF
Sbjct: 132 SHQNGIIHRDVKPANIMISATNAVKVMDF 160
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer,
antibiotic resistance, transfer; HET: GDP; 1.70A
{Enterococcus gallinarum} PDB: 3tdv_A*
Length = 306
Score = 30.4 bits (68), Expect = 1.1
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 152 HGVIHGDFNEFNLMLQEDERPV----VIDF 177
+IHGD + + + + R +IDF
Sbjct: 190 PRLIHGDLSPDHFLTNLNSRQTPLTGIIDF 219
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal
binding domain, domain SWAP, ATP-BI cell membrane,
copper transport; HET: CIT; 2.00A {Archaeoglobus
fulgidus}
Length = 73
Score = 28.1 bits (63), Expect = 1.2
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 415 ARVKKALEKRERTKVRIRNLAKGEASATSRKRRENRATIKESAGY 459
ARVKKALE+ ++ +L + + + + E+AGY
Sbjct: 21 ARVKKALEEAGAKVEKV-DLNEAVVAGNKEDVDKYIKAV-EAAGY 63
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase
enzyme family, structural genomics, JOIN for structural
genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Length = 333
Score = 30.4 bits (69), Expect = 1.2
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 136 EALYDELMDLI--VRFANHGVIHGDFNEFNLMLQEDE----RPVVIDF 177
+ ++ + +H DF+ NL+ + R VIDF
Sbjct: 165 KRFEHRFAQILSAQLEGDMVFVHRDFHAQNLLWLPEREGLARVGVIDF 212
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} PDB:
1j3u_A 3r6v_A 3r6y_A
Length = 468
Score = 30.5 bits (70), Expect = 1.3
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 6/27 (22%)
Query: 396 NFDIRSVTSASTIPPEVIRA--RVKKA 420
NF I + I PE+I++ VKK+
Sbjct: 33 NFPI----TGYRIHPELIKSLGIVKKS 55
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus
subsp}
Length = 294
Score = 30.3 bits (69), Expect = 1.3
Identities = 14/89 (15%), Positives = 37/89 (41%), Gaps = 16/89 (17%)
Query: 97 ALYDRGFPVPKPVDINRHCVIMELVKGDPLSRV----SHVNNVEALYDELMDLIVR---F 149
++ D + + + ++ME ++G LS ++ A+ + I+
Sbjct: 75 SMIDVD------EEDDCYYLVMEYIEGPTLSEYIESHGPLSVDTAI--NFTNQILDGIKH 126
Query: 150 A-NHGVIHGDFNEFNLMLQEDERPVVIDF 177
A + ++H D N+++ ++ + DF
Sbjct: 127 AHDMRIVHRDIKPQNILIDSNKTLKIFDF 155
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 28.9 bits (64), Expect = 3.3
Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 24/97 (24%)
Query: 311 NSDVKSNPKESTRSEDTV--LKFVKNVELQKNEGKVNEILDKNCV--------NCAVEKI 360
+S+VK N +S ++ V +EL + K K + N A+ ++
Sbjct: 125 SSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQK-----GKKFLVIAYEPFENIAI-EL 178
Query: 361 NPDELQNGDKNDIILDENRLGSNTKTSRDPSEEDFNF 397
P+E I+ EN N D + F
Sbjct: 179 PPNE--------ILFSENNDMDNNNDGVDELNKKCTF 207
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET:
ATP; 3.46A {Homo sapiens}
Length = 319
Score = 28.5 bits (64), Expect = 4.2
Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 18/75 (24%)
Query: 115 CVIMELVKGDPLSRVSHVNNVEALYDELMDLIVRFA-----------NHGVIHGDFNEFN 163
+I L KG L V + D ++ + A G++H D N
Sbjct: 105 AIITSLCKGRTLYSVVRDAKIV--LD--VNKTRQIAQEIVKGMGYLHAKGILHKDLKSKN 160
Query: 164 LMLQEDERPVVI-DF 177
+ D VVI DF
Sbjct: 161 VFY--DNGKVVITDF 173
>4a17_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila}
Length = 185
Score = 28.1 bits (62), Expect = 5.0
Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 18/97 (18%)
Query: 370 KNDIILDENRLGSNTKTSRDPSEEDFNFDIRSVTSASTI---PPEVI-RARVKKALEKRE 425
+ + LD N + S + IR + + + R+R + LE +
Sbjct: 19 QKRLWLDPNESS-------EISMANSRASIRKLIKDGLVMKRSTVIHSRSRARAFLEAKR 71
Query: 426 RTKVRIRNLAKGEASATS-------RKRRENRATIKE 455
+ + KG +A R++R R +++
Sbjct: 72 KGRHTGSGKRKGTRNARMPTKVLWMRRQRVLRRLLRK 108
>3m1x_A Putative endoribonuclease L-PSP; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, unknown function; HET: FLC; 1.20A {Entamoeba
histolytica} PDB: 3m4s_A 3mqw_A*
Length = 148
Score = 27.6 bits (62), Expect = 5.9
Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 3/27 (11%)
Query: 90 KEFAYMNALYDRGFPVPKPVDINRHCV 116
K+F N +Y F KP R C
Sbjct: 106 KDFGVFNGIYAEAFGNHKPA---RACF 129
>3lyb_A Putative endoribonuclease; structural genomics, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.66A {Klebsiella pneumoniae}
Length = 165
Score = 27.5 bits (61), Expect = 6.3
Identities = 6/27 (22%), Positives = 9/27 (33%), Gaps = 3/27 (11%)
Query: 90 KEFAYMNALYDRGFPVPKPVDINRHCV 116
F Y + + +P PV V
Sbjct: 105 DHFPYYSRVRKLFYPDQPPV---STVV 128
>2cwj_A Putative endonuclease; hydrolase, endoribonucrease, structural GE
NPPSFA, national project on protein structural and
function analyses; 3.60A {Aeropyrum pernix} SCOP:
d.79.1.1
Length = 123
Score = 26.7 bits (60), Expect = 7.0
Identities = 8/25 (32%), Positives = 10/25 (40%), Gaps = 3/25 (12%)
Query: 92 FAYMNALYDRGFPVPKPVDINRHCV 116
F+ N +Y F P P R V
Sbjct: 79 FSEFNEVYREYFNRPYPA---RAVV 100
>3v4d_A Aminoacrylate peracid reductase RUTC; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: MSE; 1.95A {Escherichia coli
O6}
Length = 134
Score = 27.1 bits (61), Expect = 7.1
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 90 KEFAYMNALYDRGFPVPKPVDINRHCV 116
K +A +N +Y FP KP R C+
Sbjct: 90 KNYAAINEIYAEFFPGDKPA---RFCI 113
>1qd9_A Purine regulatory protein YABJ; perchloric acid soluble protein,
purine regulation, YJGF/YER057C family, gene regulation;
1.70A {Bacillus subtilis} SCOP: d.79.1.1
Length = 124
Score = 26.7 bits (60), Expect = 7.2
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
Query: 92 FAYMNALYDRGFPVPKPVDINRHCV 116
FA +N +Y + F KP R CV
Sbjct: 83 FAEVNEVYGQYFDTHKPA---RSCV 104
>2dyy_A UPF0076 protein PH0854; putative translation initiation inhibitor,
trimer, structural genomics, NPPSFA; 2.60A {Pyrococcus
horikoshii}
Length = 126
Score = 26.7 bits (60), Expect = 7.3
Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 90 KEFAYMNALYDRGFPVPKPVDINRHCV 116
+FA MN +Y F KP R V
Sbjct: 83 NDFAKMNEVYAEYFGESKPA---RVAV 106
>2cvl_A TTHA0137, protein translation initiation inhibitor; structural
genomics, NPPSFA; 1.65A {Thermus thermophilus} SCOP:
d.79.1.1 PDB: 2csl_A 2cw4_A
Length = 124
Score = 26.7 bits (60), Expect = 7.4
Identities = 9/25 (36%), Positives = 10/25 (40%), Gaps = 3/25 (12%)
Query: 92 FAYMNALYDRGFPVPKPVDINRHCV 116
F N +Y R F P P R V
Sbjct: 83 FPGFNEVYARYFTPPYPA---RATV 104
>1jd1_A Hypothetical 13.9 kDa protein in FCY2-PET117 intergenic region;
translation inhibitor, structural genomics, PSI; 1.70A
{Saccharomyces cerevisiae} SCOP: d.79.1.1
Length = 129
Score = 26.7 bits (60), Expect = 7.7
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
Query: 92 FAYMNALYDRGFPVPKPVDINRHCV 116
FA N++Y + F KP R CV
Sbjct: 87 FAEFNSVYAKYFNTHKPA---RSCV 108
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase,
transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A*
3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A*
3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A*
2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A*
Length = 289
Score = 27.6 bits (62), Expect = 8.0
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Query: 115 CVIMELVKGDPLSRVSHVNNVEALYDELMDLIVRFA-------NHGVIHGDFNEFNLMLQ 167
++ + +G L H + + +L+D+ + A +IH D N+ L
Sbjct: 95 AIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAKSIIHRDLKSNNIFLH 154
Query: 168 EDERPVVIDF 177
ED + DF
Sbjct: 155 EDNTVKIGDF 164
>3l7q_A Putative translation initiation inhibitor, ALDR R like protein;
translation initiation inhibitor regulator-like; 2.50A
{Streptococcus mutans}
Length = 125
Score = 26.7 bits (60), Expect = 8.4
Identities = 7/27 (25%), Positives = 9/27 (33%), Gaps = 3/27 (11%)
Query: 90 KEFAYMNALYDRGFPVPKPVDINRHCV 116
+F N +Y F P R V
Sbjct: 82 DDFVPFNEVYATAFKSDFPA---RSAV 105
>3quw_A Protein MMF1; chorismate mutase fold, intact mitochondria
maintenance, mitochondrial protein, protein binding;
1.75A {Saccharomyces cerevisiae}
Length = 153
Score = 26.9 bits (60), Expect = 9.9
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 90 KEFAYMNALYDRGFPVPKPVDINRHCV 116
K FA N++Y + F KP R CV
Sbjct: 109 KNFAEFNSVYAKHFHTHKPA---RSCV 132
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.132 0.369
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,956,072
Number of extensions: 436591
Number of successful extensions: 1281
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1259
Number of HSP's successfully gapped: 79
Length of query: 460
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 363
Effective length of database: 3,993,456
Effective search space: 1449624528
Effective search space used: 1449624528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (26.9 bits)