Query psy1114
Match_columns 480
No_of_seqs 392 out of 852
Neff 3.6
Searched_HMMs 46136
Date Fri Aug 16 19:00:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1114.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1114hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00173 60S ribosomal protein 100.0 1E-89 2.2E-94 652.6 20.8 202 68-269 1-202 (213)
2 TIGR00279 L10e ribosomal prote 100.0 1.1E-70 2.4E-75 509.6 17.5 171 68-241 1-171 (172)
3 KOG0857|consensus 100.0 3E-71 6.6E-76 523.3 7.9 201 68-268 1-202 (212)
4 PRK04199 rpl10e 50S ribosomal 100.0 1E-67 2.3E-72 489.9 17.6 169 68-239 1-169 (172)
5 PTZ00173 60S ribosomal protein 100.0 9.4E-57 2E-61 427.4 10.0 112 341-452 1-112 (213)
6 TIGR00279 L10e ribosomal prote 100.0 7.2E-47 1.6E-51 350.9 7.1 130 341-474 1-130 (172)
7 COG0197 RplP Ribosomal protein 100.0 2.4E-45 5.3E-50 333.1 13.9 141 79-241 2-144 (146)
8 PRK04199 rpl10e 50S ribosomal 100.0 1.3E-45 2.7E-50 342.7 7.1 128 341-472 1-128 (172)
9 KOG0857|consensus 100.0 1.7E-41 3.7E-46 321.4 -1.4 112 341-452 1-113 (212)
10 cd01433 Ribosomal_L16_L10e Rib 100.0 1.3E-31 2.9E-36 231.8 12.2 109 111-233 4-112 (112)
11 PF00252 Ribosomal_L16: Riboso 100.0 1.4E-31 2.9E-36 238.8 10.7 132 72-234 1-133 (133)
12 PRK09203 rplP 50S ribosomal pr 100.0 3.9E-30 8.5E-35 231.6 12.4 103 117-235 32-134 (138)
13 TIGR01164 rplP_bact ribosomal 100.0 2.5E-29 5.3E-34 223.5 11.0 96 117-228 31-126 (126)
14 CHL00044 rpl16 ribosomal prote 100.0 5.4E-29 1.2E-33 223.8 12.2 103 117-235 32-134 (135)
15 COG0197 RplP Ribosomal protein 99.9 4.9E-25 1.1E-29 200.8 6.8 101 352-472 2-102 (146)
16 KOG3422|consensus 99.7 2.7E-17 5.8E-22 157.6 9.7 107 117-236 71-177 (221)
17 PF00252 Ribosomal_L16: Riboso 99.4 2.7E-13 5.9E-18 121.5 6.2 87 345-452 1-88 (133)
18 cd01433 Ribosomal_L16_L10e Rib 99.2 1.6E-11 3.4E-16 106.9 4.1 75 384-472 4-78 (112)
19 TIGR01164 rplP_bact ribosomal 99.0 1.4E-10 3E-15 103.9 3.2 66 390-470 31-96 (126)
20 PRK09203 rplP 50S ribosomal pr 98.9 3.3E-09 7.2E-14 96.4 6.1 60 266-327 75-134 (138)
21 CHL00044 rpl16 ribosomal prote 98.8 3.3E-09 7.1E-14 96.2 4.1 55 390-455 32-86 (135)
22 KOG3422|consensus 84.0 1.9 4E-05 43.0 5.1 56 271-327 121-176 (221)
23 PF07831 PYNP_C: Pyrimidine nu 58.6 18 0.00039 30.1 4.4 28 195-222 43-71 (75)
24 cd04906 ACT_ThrD-I_1 First of 33.8 34 0.00074 28.2 2.3 29 290-318 39-69 (85)
25 PRK10380 hypothetical protein; 31.2 40 0.00087 27.9 2.2 48 353-408 3-54 (63)
26 PF07831 PYNP_C: Pyrimidine nu 30.5 66 0.0014 26.8 3.5 28 287-314 43-71 (75)
27 PRK10380 hypothetical protein; 28.6 53 0.0011 27.2 2.5 47 80-134 3-53 (63)
28 cd04885 ACT_ThrD-I Tandem C-te 28.5 51 0.0011 25.8 2.4 30 289-318 36-66 (68)
29 COG0347 GlnK Nitrogen regulato 27.1 4E+02 0.0086 24.4 8.1 86 204-328 5-95 (112)
30 PF15567 Imm19: Immunity prote 23.7 76 0.0016 27.4 2.8 64 406-473 2-84 (88)
31 cd00233 VIP2 VIP2; A family of 23.0 2.1E+02 0.0045 27.5 5.9 102 211-332 63-179 (201)
32 KOG4355|consensus 22.7 59 0.0013 35.8 2.3 40 304-344 36-77 (547)
33 COG0504 PyrG CTP synthase (UTP 22.5 88 0.0019 35.2 3.6 50 213-263 305-354 (533)
34 COG3129 Predicted SAM-dependen 22.3 1.5E+02 0.0032 30.9 4.9 50 91-145 73-130 (292)
35 cd04906 ACT_ThrD-I_1 First of 21.9 70 0.0015 26.4 2.2 29 17-45 39-69 (85)
36 cd01583 IPMI 3-isopropylmalate 21.3 2.5E+02 0.0053 30.4 6.6 63 189-257 252-314 (382)
37 PF04019 DUF359: Protein of un 20.2 2.4E+02 0.0052 25.8 5.4 45 95-139 11-58 (121)
No 1
>PTZ00173 60S ribosomal protein L10; Provisional
Probab=100.00 E-value=1e-89 Score=652.64 Aligned_cols=202 Identities=68% Similarity=1.194 Sum_probs=200.3
Q ss_pred ccccccccccccCCCCCCCcccccCCCCCceEEEeCCCCCCCCCCCceeEEEeeccccccchhHHHHHHHHhhhhhhhhc
Q psy1114 68 ETLRDQNSYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNC 147 (480)
Q Consensus 68 M~rrParcYR~~k~kpY~rs~y~rGvP~~KI~~fD~G~kka~v~efp~~v~Lvs~E~~qIss~ALEAARIaaNKyl~K~~ 147 (480)
|+||||||||+|+|||||||+||+|||||||++|||||++|+|||||+|+||+|+|.+||||+||||||+|+||||.|.+
T Consensus 1 M~~rParcYr~~~~~pY~r~~y~~gvP~~kI~~fd~G~~~a~~~~fp~~v~Lvs~E~~qIss~aLEAaRia~nr~l~K~~ 80 (213)
T PTZ00173 1 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIYDIGRKKATVDEFPVCVHIVSDEYEQISSEALEAARISANKYMVKRA 80 (213)
T ss_pred CCCCchhhhhcccCCCCchhhccCCCCCCcEEEEecCCCcCCcccCCeEEEEEEcccccccHHHHHHHHHHHHHhhhhhc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred CCCceeEEEEeCCCceeeecccccccccchhhccccCCCCCcceEEEEeeCCCeEEEEEecCCCHHHHHHHHHHcccCCC
Q psy1114 148 GKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFP 227 (480)
Q Consensus 148 Gk~~fhlrIRv~P~hVlr~nKMls~AGADRLqtGMr~afGKP~G~vARV~~GqvIfsv~~k~~~~~~AkEALrrA~~KlP 227 (480)
|+|+||||||+|||||||||||||||||||||+|||+|||+|+||||||++||+||||+++++++++|+|||++|++|||
T Consensus 81 Gk~~fhl~IRv~P~hvlR~nKm~T~AgAdrlq~gMr~gfGkp~g~vArVk~Gqiifei~~~~~~~~~AkeALrrA~~KlP 160 (213)
T PTZ00173 81 GKDGFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPNGTCARVRIGQILLSIRTKEAYVPQAIEALRRAKYKFP 160 (213)
T ss_pred CCccceEEEEEcCCcccccccccccccCchhhhhcccCCCCccEEEEEECcCCEEEEEecccCCHHHHHHHHHHhcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeCCccccccChHHHHHHHhcCceeecCceeEeehh
Q psy1114 228 GRQKIYVSKKWGFTKYDREEYETLRDQNRILHDAHFDHWIIR 269 (480)
Q Consensus 228 ~~~kIvis~~wgfT~~~~~e~~~~~~~~~l~~dG~~vk~iDR 269 (480)
++|+|+++++||||+|++|||++|+++|+|++|||+||++.+
T Consensus 161 ~~~kIv~~~~wgft~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 202 (213)
T PTZ00173 161 GRQKIVVSNKWGFTNYTREEYQKLRAEGKLIQDGVHVKLISP 202 (213)
T ss_pred CeEEEEEecccCccccCHHHHHHHHHCCeEecCCceEEEeCC
Confidence 999999999999999999999999999999999999999974
No 2
>TIGR00279 L10e ribosomal protein L10.e. L10.e is distantly related to eubacterial ribosomal protein L16.
Probab=100.00 E-value=1.1e-70 Score=509.61 Aligned_cols=171 Identities=50% Similarity=0.861 Sum_probs=167.9
Q ss_pred ccccccccccccCCCCCCCcccccCCCCCceEEEeCCCCCCCCCCCceeEEEeeccccccchhHHHHHHHHhhhhhhhhc
Q psy1114 68 ETLRDQNSYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNC 147 (480)
Q Consensus 68 M~rrParcYR~~k~kpY~rs~y~rGvP~~KI~~fD~G~kka~v~efp~~v~Lvs~E~~qIss~ALEAARIaaNKyl~K~~ 147 (480)
|++|||||||++++|||||++||+|||++||++|||||++ +|||+|++|+++|++||||+||||||+++||||++..
T Consensus 1 m~~rp~r~Yr~~~~~~Ytr~~y~~g~P~~kI~~f~~G~~~---~~fp~~~~L~a~E~~~I~~~qiEAaR~a~~r~lkk~~ 77 (172)
T TIGR00279 1 MARRPARCYRYQKNRPYTRSEYIKGVPGSKIRIYDMGNKS---AEFPVCVHLVAKEPEQIRHNALEAARIAANKYMTRRA 77 (172)
T ss_pred CCCCchhhhcccCCCCCchhhccCCCCCCcEEEEECCCcc---CCCCEEEEEEECccceecHHHHHHHHHHHHHHHHhhc
Confidence 8999999999999999999999999999999999999986 5899999999999999999999999999999999999
Q ss_pred CCCceeEEEEeCCCceeeecccccccccchhhccccCCCCCcceEEEEeeCCCeEEEEEecCCCHHHHHHHHHHcccCCC
Q psy1114 148 GKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFP 227 (480)
Q Consensus 148 Gk~~fhlrIRv~P~hVlr~nKMls~AGADRLqtGMr~afGKP~G~vARV~~GqvIfsv~~k~~~~~~AkEALrrA~~KlP 227 (480)
|+++||+|||+|||||||+|||+|+|||||||+|||+|||+|+||||+|++||+||||+++++++++|+|||++|++|||
T Consensus 78 g~~~~k~wIRvfP~~~lt~kp~~trmGaDRlq~GMr~gkG~p~~wvArVk~Gqiifei~~~~~~~~~AkeAlr~A~~KLP 157 (172)
T TIGR00279 78 GRMGYHLKIRVYPHHILRENKMATGAGADRIQQGMRGAFGKPVGTAARVKIGQKIFSVWTKPSNFDVAKEALRRAAMKFP 157 (172)
T ss_pred CccceEEEEEECCCCceecCchhhhcCchhhhcccccCCCCccEEEEEECcCCEEEEEEeecCCHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeCCcccc
Q psy1114 228 GRQKIYVSKKWGFT 241 (480)
Q Consensus 228 ~~~kIvis~~wgfT 241 (480)
++|+|+++++|+..
T Consensus 158 ~~~kiv~~~~~~~~ 171 (172)
T TIGR00279 158 VPCKIVIEKGWELL 171 (172)
T ss_pred CcEEEEEecCcccC
Confidence 99999999999864
No 3
>KOG0857|consensus
Probab=100.00 E-value=3e-71 Score=523.33 Aligned_cols=201 Identities=72% Similarity=1.145 Sum_probs=200.1
Q ss_pred ccccccccccccCCCCCCCcccccCCCCCceEEEeCCCCCCCCCCCceeEEEeeccccccchhHHHHHHHHhhhhhhhhc
Q psy1114 68 ETLRDQNSYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNC 147 (480)
Q Consensus 68 M~rrParcYR~~k~kpY~rs~y~rGvP~~KI~~fD~G~kka~v~efp~~v~Lvs~E~~qIss~ALEAARIaaNKyl~K~~ 147 (480)
|||||+|||||++|+|||+++||+||||+||+|||+|.+++.++|||+|+|++++|.++++++||||+|+++|+|+.++.
T Consensus 1 ~~~~~~~~yr~~~~~~~~ksr~~r~~p~~~~ri~d~~~~k~~~~e~~l~v~~~~~~~~~l~~~~~eA~ri~~~~~~~~~~ 80 (212)
T KOG0857|consen 1 MGRRPARCYRYSKRKPYPKSRFCRGVPDTKIRIYDLGRKKAGVDEFPLCVHLVSNEIEQLSSEALEAARICANKPMVKSK 80 (212)
T ss_pred CCCChhhhhhHHhcCCCcccccccCCCCCceeHHHhcCcCCCCcccchhhhhhhHHHHhHHHHHHHHhhhcccCcccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEEEeCC-CceeeecccccccccchhhccccCCCCCcceEEEEeeCCCeEEEEEecCCCHHHHHHHHHHcccCC
Q psy1114 148 GKDQFHIRMRLHP-FHVIRINKMLSCAGADRLQTGMRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKF 226 (480)
Q Consensus 148 Gk~~fhlrIRv~P-~hVlr~nKMls~AGADRLqtGMr~afGKP~G~vARV~~GqvIfsv~~k~~~~~~AkEALrrA~~Kl 226 (480)
|+|+||+++|+|| +||+++|||||||||||||||||++||||.|+||||++||+||||+|+++|.|+++|||+||++||
T Consensus 81 ~~d~~~~r~~~~~~fhv~~i~k~ls~~~~~RLQtgmrga~gkp~G~varV~iGqvi~Svrtk~~nkeh~ieal~rak~kf 160 (212)
T KOG0857|consen 81 GKDAFHLRVRVHPNFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSVRTKLQNKEHVIEALRRAKFKF 160 (212)
T ss_pred cccchhhhhhcccchhHHHHhhhhcccchhhhhhcccccccCccceEEEEEcCceEEEeecCcccHHHHHHHHHhccccC
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEeCCccccccChHHHHHHHhcCceeecCceeEeeh
Q psy1114 227 PGRQKIYVSKKWGFTKYDREEYETLRDQNRILHDAHFDHWII 268 (480)
Q Consensus 227 P~~~kIvis~~wgfT~~~~~e~~~~~~~~~l~~dG~~vk~iD 268 (480)
|+.|+|+++++||||+|++|||++|++++++++|||+|++++
T Consensus 161 pG~qki~vs~kwgftk~~~def~~~~~~~~~~~~g~~vk~~~ 202 (212)
T KOG0857|consen 161 PGRQKIVVSKKWGFTKFDRDEFEDLRARKRLEPDGCGVKFIP 202 (212)
T ss_pred CCceeEEeeeecCccccchhHHHHHHhhcceeccCCceeeec
Confidence 999999999999999999999999999999999999999997
No 4
>PRK04199 rpl10e 50S ribosomal protein L10e; Reviewed
Probab=100.00 E-value=1e-67 Score=489.91 Aligned_cols=169 Identities=46% Similarity=0.706 Sum_probs=165.3
Q ss_pred ccccccccccccCCCCCCCcccccCCCCCceEEEeCCCCCCCCCCCceeEEEeeccccccchhHHHHHHHHhhhhhhhhc
Q psy1114 68 ETLRDQNSYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNC 147 (480)
Q Consensus 68 M~rrParcYR~~k~kpY~rs~y~rGvP~~KI~~fD~G~kka~v~efp~~v~Lvs~E~~qIss~ALEAARIaaNKyl~K~~ 147 (480)
|++|||||||++++|||||++||+|||++||++|||||++ +|||+|++|+++|++||||+||||||+++||||++.+
T Consensus 1 m~~rp~~~Yr~~~~~~ytr~~yi~g~P~~kI~~f~~G~~~---~~~~~~~~L~a~E~~~I~~~qiEAaR~ai~r~lkk~~ 77 (172)
T PRK04199 1 MPLRPARCYRHISKPAYTRREYIGGVPGPKIVKFDMGNLS---GDFPVEVSLVVEEPCQIRHNALEAARIAANKYLTKTV 77 (172)
T ss_pred CCCCchhhhcccCCCCCchhcccCCCCCCeEEEEecCCcC---CCCCEEEEEEEcccccccHHHHHHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999976 7999999999999999999999999999999999988
Q ss_pred CCCceeEEEEeCCCceeeecccccccccchhhccccCCCCCcceEEEEeeCCCeEEEEEecCCCHHHHHHHHHHcccCCC
Q psy1114 148 GKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFP 227 (480)
Q Consensus 148 Gk~~fhlrIRv~P~hVlr~nKMls~AGADRLqtGMr~afGKP~G~vARV~~GqvIfsv~~k~~~~~~AkEALrrA~~KlP 227 (480)
|+++||+|||+|||||||+|||+++|||||||+|||+|||+|+||||+|++||+||||+++.+++++|+|||++|++|||
T Consensus 78 G~~~~k~wIrvfP~~~lt~kp~~~rmGAdRmg~GMr~akG~p~~wva~Vk~G~ilfei~~~~~~~~~akeAlr~a~~KLP 157 (172)
T PRK04199 78 GRSNYHLKIRVYPHHVLRENKMATGAGADRVSDGMRLAFGKPVGTAARVEKGQKIFTVRVNPEHLEAAKEALRRAAMKLP 157 (172)
T ss_pred CCcccEEEEEeCCCcceecChhHhhcchhhhccCcccCCCCccEEEEEECcCCEEEEEEecCCCHHHHHHHHHHhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeCCcc
Q psy1114 228 GRQKIYVSKKWG 239 (480)
Q Consensus 228 ~~~kIvis~~wg 239 (480)
++|+|+++++-+
T Consensus 158 ~k~kiv~~~~~~ 169 (172)
T PRK04199 158 TPCRIVVEKGKE 169 (172)
T ss_pred CcEEEEEecccc
Confidence 999999988754
No 5
>PTZ00173 60S ribosomal protein L10; Provisional
Probab=100.00 E-value=9.4e-57 Score=427.43 Aligned_cols=112 Identities=74% Similarity=1.327 Sum_probs=110.8
Q ss_pred HhhhcccccccccCCCCCCCCCcCCCCCCceeEEeCCCCCCCCCCCCeEEEEecccccccchhhHHHHHhhhhhhhHhhh
Q psy1114 341 ETLRDQNSYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNC 420 (480)
Q Consensus 341 e~lRparcYR~~k~kpY~r~~y~rGVP~~KI~~fdmG~kka~~~efp~~v~Lvs~E~~QirseALEAARI~aNKYl~k~~ 420 (480)
|.+|||||||+++|||||||+||+|||||||++|||||++++|||||+|+||+|+|.+||||+||||||||+||||+|.+
T Consensus 1 M~~rParcYr~~~~~pY~r~~y~~gvP~~kI~~fd~G~~~a~~~~fp~~v~Lvs~E~~qIss~aLEAaRia~nr~l~K~~ 80 (213)
T PTZ00173 1 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIYDIGRKKATVDEFPVCVHIVSDEYEQISSEALEAARISANKYMVKRA 80 (213)
T ss_pred CCCCchhhhhcccCCCCchhhccCCCCCCcEEEEecCCCcCCcccCCeEEEEEEcccccccHHHHHHHHHHHHHhhhhhc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEeCCceEEEeeccccccccCccc
Q psy1114 421 GKDQFHIRMRLHPFHVIRINKMLSCAGADRFE 452 (480)
Q Consensus 421 Gk~~fhlrvr~~PhhVlReNKMls~AGADRlq 452 (480)
|+|+|||+||+|||||||||||||||||||||
T Consensus 81 Gk~~fhl~IRv~P~hvlR~nKm~T~AgAdrlq 112 (213)
T PTZ00173 81 GKDGFHLRIRVHPFHVLRINKMLSCAGADRLQ 112 (213)
T ss_pred CCccceEEEEEcCCcccccccccccccCchhh
Confidence 99999999999999999999999999999998
No 6
>TIGR00279 L10e ribosomal protein L10.e. L10.e is distantly related to eubacterial ribosomal protein L16.
Probab=100.00 E-value=7.2e-47 Score=350.90 Aligned_cols=130 Identities=44% Similarity=0.791 Sum_probs=124.2
Q ss_pred HhhhcccccccccCCCCCCCCCcCCCCCCceeEEeCCCCCCCCCCCCeEEEEecccccccchhhHHHHHhhhhhhhHhhh
Q psy1114 341 ETLRDQNSYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNC 420 (480)
Q Consensus 341 e~lRparcYR~~k~kpY~r~~y~rGVP~~KI~~fdmG~kka~~~efp~~v~Lvs~E~~QirseALEAARI~aNKYl~k~~ 420 (480)
|.+|||||||++++|||||++||+|||++||++|||||++ +|||+|++|++.|.+||||+||||||+++||||.+.+
T Consensus 1 m~~rp~r~Yr~~~~~~Ytr~~y~~g~P~~kI~~f~~G~~~---~~fp~~~~L~a~E~~~I~~~qiEAaR~a~~r~lkk~~ 77 (172)
T TIGR00279 1 MARRPARCYRYQKNRPYTRSEYIKGVPGSKIRIYDMGNKS---AEFPVCVHLVAKEPEQIRHNALEAARIAANKYMTRRA 77 (172)
T ss_pred CCCCchhhhcccCCCCCchhhccCCCCCCcEEEEECCCcc---CCCCEEEEEEECccceecHHHHHHHHHHHHHHHHhhc
Confidence 5689999999999999999999999999999999999986 4899999999999999999999999999999999999
Q ss_pred CCCceEEEEEeCCceEEEeeccccccccCccccCCceeeecCCCCchhHhhhhh
Q psy1114 421 GKDQFHIRMRLHPFHVIRINKMLSCAGADRFELDGCNVKYRAEHGPLAAWKKVQ 474 (480)
Q Consensus 421 Gk~~fhlrvr~~PhhVlReNKMls~AGADRlq~dG~~~~~~~~~g~~~~~~~~~ 474 (480)
|+++||++||+||||+|++|+|+++||||||| +||+-.|+.+.|-.++.++-|
T Consensus 78 g~~~~k~wIRvfP~~~lt~kp~~trmGaDRlq-~GMr~gkG~p~~wvArVk~Gq 130 (172)
T TIGR00279 78 GRMGYHLKIRVYPHHILRENKMATGAGADRIQ-QGMRGAFGKPVGTAARVKIGQ 130 (172)
T ss_pred CccceEEEEEECCCCceecCchhhhcCchhhh-cccccCCCCccEEEEEECcCC
Confidence 99999999999999999999999999999999 999999999999887766543
No 7
>COG0197 RplP Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-45 Score=333.12 Aligned_cols=141 Identities=33% Similarity=0.397 Sum_probs=128.0
Q ss_pred cCCCCCCCcccccCCCCCceEEEeCCCCCCCCCCCceeEEEeeccccccchhHHHHHHHHhhhhhhhhcCCCceeEEEEe
Q psy1114 79 CKNKPYPKSRFCRGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRL 158 (480)
Q Consensus 79 ~k~kpY~rs~y~rGvP~~KI~~fD~G~kka~v~efp~~v~Lvs~E~~qIss~ALEAARIaaNKyl~K~~Gk~~fhlrIRv 158 (480)
...|+|||.||++|+|+++|++||+||+ +||.+++|++.|++||||+||||||+|+||||++ .|+ ||||+
T Consensus 2 ml~Pk~tk~rk~~~g~~~~~~~~~~G~~-----~~fg~~gL~a~e~~~It~~qiEAARia~~R~lkr-~g~----~wIRv 71 (146)
T COG0197 2 MLQPKRTKYRKQHKGRGPGITIAKGGNK-----VFFGEYGLVALEPGQITARQIEAARIAANRYLKR-GGG----LWIRV 71 (146)
T ss_pred CcCCCcceeecccCCCCCCceeccCCcc-----ccceEEEEEEcccceecHHHHHHHHHHHHHHhhh-cCC----EEEEE
Confidence 4678999999999999999999999986 7999999999999999999999999999999997 452 99999
Q ss_pred CCCceeeecccccccccchhhccccCCCCCcceEEEEeeCCCeEEEEEecCCCHHHHHHHHHHcccCCCCceE--EEEeC
Q psy1114 159 HPFHVIRINKMLSCAGADRLQTGMRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQK--IYVSK 236 (480)
Q Consensus 159 ~P~hVlr~nKMls~AGADRLqtGMr~afGKP~G~vARV~~GqvIfsv~~k~~~~~~AkEALrrA~~KlP~~~k--Ivis~ 236 (480)
|||||||+|| ||||+++|| |+|+||||||+|||+||||+++++ +.|+||||+|++|||++|+ |.+++
T Consensus 72 fP~~~~~~kp-----~e~Rmg~Gk----G~pegwaArVkpG~vlfei~g~~e--~~A~EAlr~Aa~KLP~~~~~v~~~~~ 140 (146)
T COG0197 72 FPDKPLTEKP-----GEDRMGKGK----GKPEGWAARVKPGRVLFEIAGVPE--ELAREALRRAAAKLPVKTKFVIRIEK 140 (146)
T ss_pred cCCceeeeCC-----CcccccCCC----CCccEEEEEecCCcEEEEEecCcH--HHHHHHHHHHhhcCCCceEEEEEEec
Confidence 9999999999 888888888 999999999999999999999755 5599999999999999955 45545
Q ss_pred Ccccc
Q psy1114 237 KWGFT 241 (480)
Q Consensus 237 ~wgfT 241 (480)
+.++
T Consensus 141 -~~~~ 144 (146)
T COG0197 141 -REGT 144 (146)
T ss_pred -chhc
Confidence 5554
No 8
>PRK04199 rpl10e 50S ribosomal protein L10e; Reviewed
Probab=100.00 E-value=1.3e-45 Score=342.72 Aligned_cols=128 Identities=41% Similarity=0.691 Sum_probs=123.2
Q ss_pred HhhhcccccccccCCCCCCCCCcCCCCCCceeEEeCCCCCCCCCCCCeEEEEecccccccchhhHHHHHhhhhhhhHhhh
Q psy1114 341 ETLRDQNSYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNC 420 (480)
Q Consensus 341 e~lRparcYR~~k~kpY~r~~y~rGVP~~KI~~fdmG~kka~~~efp~~v~Lvs~E~~QirseALEAARI~aNKYl~k~~ 420 (480)
|.+|||||||++++|||||++||+|||++||++|||||++ +|||+|++|++.|.+||||+||||||+++||||.+++
T Consensus 1 m~~rp~~~Yr~~~~~~ytr~~yi~g~P~~kI~~f~~G~~~---~~~~~~~~L~a~E~~~I~~~qiEAaR~ai~r~lkk~~ 77 (172)
T PRK04199 1 MPLRPARCYRHISKPAYTRREYIGGVPGPKIVKFDMGNLS---GDFPVEVSLVVEEPCQIRHNALEAARIAANKYLTKTV 77 (172)
T ss_pred CCCCchhhhcccCCCCCchhcccCCCCCCeEEEEecCCcC---CCCCEEEEEEEcccccccHHHHHHHHHHHHHHHHhcc
Confidence 5789999999999999999999999999999999999976 6999999999999999999999999999999999999
Q ss_pred CCCceEEEEEeCCceEEEeeccccccccCccccCCceeeecCCCCchhHhhh
Q psy1114 421 GKDQFHIRMRLHPFHVIRINKMLSCAGADRFELDGCNVKYRAEHGPLAAWKK 472 (480)
Q Consensus 421 Gk~~fhlrvr~~PhhVlReNKMls~AGADRlq~dG~~~~~~~~~g~~~~~~~ 472 (480)
|++|||++||+||||+|++|+|+++||||||| +||+..|+++.|-.++..+
T Consensus 78 G~~~~k~wIrvfP~~~lt~kp~~~rmGAdRmg-~GMr~akG~p~~wva~Vk~ 128 (172)
T PRK04199 78 GRSNYHLKIRVYPHHVLRENKMATGAGADRVS-DGMRLAFGKPVGTAARVEK 128 (172)
T ss_pred CCcccEEEEEeCCCcceecChhHhhcchhhhc-cCcccCCCCccEEEEEECc
Confidence 99999999999999999999999999999999 9999999999988776655
No 9
>KOG0857|consensus
Probab=100.00 E-value=1.7e-41 Score=321.35 Aligned_cols=112 Identities=73% Similarity=1.235 Sum_probs=110.9
Q ss_pred HhhhcccccccccCCCCCCCCCcCCCCCCceeEEeCCCCCCCCCCCCeEEEEecccccccchhhHHHHHhhhhhhhHhhh
Q psy1114 341 ETLRDQNSYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNC 420 (480)
Q Consensus 341 e~lRparcYR~~k~kpY~r~~y~rGVP~~KI~~fdmG~kka~~~efp~~v~Lvs~E~~QirseALEAARI~aNKYl~k~~ 420 (480)
|.+||+||||+++++||++++||+||||+||+|||+|.+++.++|||+|+|++++|.+||+++||||+|||+|+|+++++
T Consensus 1 ~~~~~~~~yr~~~~~~~~ksr~~r~~p~~~~ri~d~~~~k~~~~e~~l~v~~~~~~~~~l~~~~~eA~ri~~~~~~~~~~ 80 (212)
T KOG0857|consen 1 MGRRPARCYRYSKRKPYPKSRFCRGVPDTKIRIYDLGRKKAGVDEFPLCVHLVSNEIEQLSSEALEAARICANKPMVKSK 80 (212)
T ss_pred CCCChhhhhhHHhcCCCcccccccCCCCCceeHHHhcCcCCCCcccchhhhhhhHHHHhHHHHHHHHhhhcccCcccccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEeCC-ceEEEeeccccccccCccc
Q psy1114 421 GKDQFHIRMRLHP-FHVIRINKMLSCAGADRFE 452 (480)
Q Consensus 421 Gk~~fhlrvr~~P-hhVlReNKMls~AGADRlq 452 (480)
|+|+||+++|+|| |||+++|||||||||||||
T Consensus 81 ~~d~~~~r~~~~~~fhv~~i~k~ls~~~~~RLQ 113 (212)
T KOG0857|consen 81 GKDAFHLRVRVHPNFHVLRINKMLSCAGADRLQ 113 (212)
T ss_pred cccchhhhhhcccchhHHHHhhhhcccchhhhh
Confidence 9999999999999 9999999999999999999
No 10
>cd01433 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with the 30S subunit, binding of aminoacyl-tRNA and interaction with antibiotics. L16 is required for the function of elongation factor P (EF-P), a protein involved in peptide bond synthesis through the stimulation of peptidyl transferase activity by the ribosome. Mutations in L16 and the adjoining bases of 23S rRNA confer antibiotic resistance in bacteria, suggesting a role for L16 in the formation of the antibiotic binding site. The GTPase RbgA (YlqF) is essential for the assembly of the large subunit, and it is believed to regulate the incorporation of L16. L10e is the archaeal and eukaryotic cytosolic homolog of bacterial L16. L16 and L10e exhibit structural differences at the N-terminus.
Probab=99.97 E-value=1.3e-31 Score=231.81 Aligned_cols=109 Identities=39% Similarity=0.467 Sum_probs=103.7
Q ss_pred CCCceeEEEeeccccccchhHHHHHHHHhhhhhhhhcCCCceeEEEEeCCCceeeecccccccccchhhccccCCCCCcc
Q psy1114 111 EDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAYGKPQ 190 (480)
Q Consensus 111 ~efp~~v~Lvs~E~~qIss~ALEAARIaaNKyl~K~~Gk~~fhlrIRv~P~hVlr~nKMls~AGADRLqtGMr~afGKP~ 190 (480)
++++.+.+|+++|++|||++||||||+++||||.+. +|++|||+|||||+|+|| +++|||+|||+|+
T Consensus 4 ~~~~g~~gL~a~e~~~i~~~~lEa~R~~i~r~l~k~----~~~~~ir~~p~~~vt~k~---------~~~rMGkGKG~~~ 70 (112)
T cd01433 4 KLFFGEYGLVALEPGRITAEQLEAARIAINRYLKKK----GGKLWIRVFPDHPVTKKP---------LETRMGKGKGKPE 70 (112)
T ss_pred eeccceEEEEECcCCeECHHHHHHHHHHHHHHhhhc----CceEEEEecCCccEEECc---------cccccCCCCCCcc
Confidence 478899999999999999999999999999999985 579999999999999999 9999999999999
Q ss_pred eEEEEeeCCCeEEEEEecCCCHHHHHHHHHHcccCCCCceEEE
Q psy1114 191 GTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIY 233 (480)
Q Consensus 191 G~vARV~~GqvIfsv~~k~~~~~~AkEALrrA~~KlP~~~kIv 233 (480)
+|||||++||+|||+.+... .+.|++||++|++|||++++|+
T Consensus 71 ~~~a~v~~G~iifEi~~~~~-~~~~~~alk~a~~Klp~~~k~i 112 (112)
T cd01433 71 GWVARVKPGQILFEVRGVPE-EEVAKEALRRAAKKLPIKTKIV 112 (112)
T ss_pred EEEEEECCCCEEEEEeCcCc-HHHHHHHHHHhhccCCCcEEEC
Confidence 99999999999999999654 9999999999999999999984
No 11
>PF00252 Ribosomal_L16: Ribosomal protein L16p/L10e; InterPro: IPR016180 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a structural domain with an alpha/beta-hammerhead fold, where the beta-hammerhead motif is similar to that in barrel-sandwich hybrids. Domains of this structure can be found in ribosomal proteins L10e and L16. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 2ZJR_J 1Y69_K 3DLL_J 2ZJQ_J 2ZJP_J 3PIO_J 3CF5_J 3PIP_J 2ZKR_h 3J11_O ....
Probab=99.97 E-value=1.4e-31 Score=238.78 Aligned_cols=132 Identities=35% Similarity=0.506 Sum_probs=117.5
Q ss_pred cccc-ccccCCCCCCCcccccCCCCCceEEEeCCCCCCCCCCCceeEEEeeccccccchhHHHHHHHHhhhhhhhhcCCC
Q psy1114 72 DQNS-YRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKD 150 (480)
Q Consensus 72 Parc-YR~~k~kpY~rs~y~rGvP~~KI~~fD~G~kka~v~efp~~v~Lvs~E~~qIss~ALEAARIaaNKyl~K~~Gk~ 150 (480)
|.+| ||. ..+ |+|.+|+.++|+.++. | |+ ++|++.|.++||++||||||+++||+|.+ .|
T Consensus 1 Pk~~kyrk-~~k-~~r~~~~~~~~~~~l~-~--g~-----------~gl~a~~~g~l~~~qlEa~R~~i~r~lkk-~~-- 61 (133)
T PF00252_consen 1 PKRTKYRK-YQK-YPRINYGKSKPGNKLK-F--GD-----------YGLKALEPGRLTSNQLEAARIAINRYLKK-NG-- 61 (133)
T ss_dssp TSCCSTSS-SSS--SSTTTSTTSSCSSSS-S--SS-----------EEEEESS-EEEEHHHHHHHHHHHHHHHHH-TS--
T ss_pred CCCCccCC-CCC-CCCCCcccccCccEEE-e--ee-----------eeEEEeeeeeechhhhHHHHHHHHHHhhh-he--
Confidence 7899 988 455 9999999999988887 4 22 89999999999999999999999999987 54
Q ss_pred ceeEEEEeCCCceeeecccccccccchhhccccCCCCCcceEEEEeeCCCeEEEEEecCCCHHHHHHHHHHcccCCCCce
Q psy1114 151 QFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQ 230 (480)
Q Consensus 151 ~fhlrIRv~P~hVlr~nKMls~AGADRLqtGMr~afGKP~G~vARV~~GqvIfsv~~k~~~~~~AkEALrrA~~KlP~~~ 230 (480)
.+|||+|||++||+|| ++++|++|+|+|++|||+|++||+|||+.++ .+.+.|++||++|++|||+++
T Consensus 62 --~~~i~v~p~~~vTkk~---------~~~RMG~GKG~~~~~~a~V~~G~iifEi~~~-v~~~~a~~alk~a~~KLP~~~ 129 (133)
T PF00252_consen 62 --KLWIRVFPHHPVTKKP---------LETRMGKGKGKIDHWVARVKPGQIIFEIGGK-VNEEEAKEALKRAAKKLPIKT 129 (133)
T ss_dssp --TEEESSSCEEEEEE-S---------SSSSSSSSSCEEEEEEEEESTTEEEEEEESG-SCHHHHHHHHHHHHHTSSSCE
T ss_pred --eEEEEeeeeeeeeeeh---------hhhhhccCCCCccEEEEEECCCcEEEEECCc-CCHHHHHHHHHHHHhhCCCCE
Confidence 5999999999999999 7999999999999999999999999999663 599999999999999999999
Q ss_pred EEEE
Q psy1114 231 KIYV 234 (480)
Q Consensus 231 kIvi 234 (480)
+|+.
T Consensus 130 ~~v~ 133 (133)
T PF00252_consen 130 KFVS 133 (133)
T ss_dssp EEE-
T ss_pred EEeC
Confidence 9974
No 12
>PRK09203 rplP 50S ribosomal protein L16; Reviewed
Probab=99.97 E-value=3.9e-30 Score=231.65 Aligned_cols=103 Identities=23% Similarity=0.282 Sum_probs=98.6
Q ss_pred EEEeeccccccchhHHHHHHHHhhhhhhhhcCCCceeEEEEeCCCceeeecccccccccchhhccccCCCCCcceEEEEe
Q psy1114 117 VHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAYGKPQGTVARV 196 (480)
Q Consensus 117 v~Lvs~E~~qIss~ALEAARIaaNKyl~K~~Gk~~fhlrIRv~P~hVlr~nKMls~AGADRLqtGMr~afGKP~G~vARV 196 (480)
.+|+++|.+|||++||||||+++||||.+ .| ++|||+|||||||+|| ++++|++|||+|++|||||
T Consensus 32 ~gL~a~e~g~i~~~qlEaaR~~i~r~Lkk-~g----~~~irv~P~~~vt~k~---------~~~RMGkGKG~~~~~varV 97 (138)
T PRK09203 32 FGLKALEPGWITARQIEAARIAMTRHIKR-GG----KVWIRIFPDKPVTKKP---------AEVRMGKGKGSPEYWVAVV 97 (138)
T ss_pred EEEEECcCCeEcHHHHHHHHHHHHHHhhc-Cc----eEEEEeCCCccEEcCh---------hhccccCCCCCCcEEEEEE
Confidence 58999999999999999999999999975 56 7999999999999999 8899999999999999999
Q ss_pred eCCCeEEEEEecCCCHHHHHHHHHHcccCCCCceEEEEe
Q psy1114 197 NIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVS 235 (480)
Q Consensus 197 ~~GqvIfsv~~k~~~~~~AkEALrrA~~KlP~~~kIvis 235 (480)
++||+||||++ .+.+.|+|||++|++|||++|+|+..
T Consensus 98 k~G~iifEi~~--~~~~~a~~al~~a~~KLP~~~kii~~ 134 (138)
T PRK09203 98 KPGRILFEIAG--VSEELAREALRLAAAKLPIKTKFVKR 134 (138)
T ss_pred CCCCEEEEEeC--CCHHHHHHHHHHHhccCCCcEEEEEe
Confidence 99999999998 79999999999999999999999975
No 13
>TIGR01164 rplP_bact ribosomal protein L16, bacterial/organelle. This model describes bacterial and organellar ribosomal protein L16. The homologous protein of the eukaryotic cytosol is designated L10
Probab=99.96 E-value=2.5e-29 Score=223.50 Aligned_cols=96 Identities=24% Similarity=0.284 Sum_probs=92.0
Q ss_pred EEEeeccccccchhHHHHHHHHhhhhhhhhcCCCceeEEEEeCCCceeeecccccccccchhhccccCCCCCcceEEEEe
Q psy1114 117 VHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAYGKPQGTVARV 196 (480)
Q Consensus 117 v~Lvs~E~~qIss~ALEAARIaaNKyl~K~~Gk~~fhlrIRv~P~hVlr~nKMls~AGADRLqtGMr~afGKP~G~vARV 196 (480)
.+|+++|.+|||++||||||+++||||.+ +|++|||+|||+|||+|| ++++|++|||+|++|||||
T Consensus 31 ~gL~a~e~~~i~~~qlEaaR~~i~r~l~~-----~~~~~irv~P~~~vt~k~---------~~~RMGkGKG~~~~~varV 96 (126)
T TIGR01164 31 YGLQALEPGWITARQIEAARVAMTRYVKR-----GGKLWIRIFPDKPYTKKP---------LETRMGKGKGNPEYWVAVV 96 (126)
T ss_pred EeeEECcCCeEcHHHHHHHHHHHHHHHhh-----CceEEEEECCCcCEEeCc---------hhccccCCCCCCCEEEEEE
Confidence 67999999999999999999999999984 569999999999999999 7889999999999999999
Q ss_pred eCCCeEEEEEecCCCHHHHHHHHHHcccCCCC
Q psy1114 197 NIGQPIMSVRSSDKFKPAVIEALRRAKFKFPG 228 (480)
Q Consensus 197 ~~GqvIfsv~~k~~~~~~AkEALrrA~~KlP~ 228 (480)
++||+||||.+ +++++|+|||++|++|||.
T Consensus 97 ~~G~ilfEi~~--~~~~~a~~al~~a~~KLP~ 126 (126)
T TIGR01164 97 KPGKILFEIAG--VPEEVAREAFRLAASKLPI 126 (126)
T ss_pred CCCCEEEEEeC--CCHHHHHHHHHHHHhcCCC
Confidence 99999999998 7999999999999999995
No 14
>CHL00044 rpl16 ribosomal protein L16
Probab=99.96 E-value=5.4e-29 Score=223.81 Aligned_cols=103 Identities=23% Similarity=0.311 Sum_probs=97.3
Q ss_pred EEEeeccccccchhHHHHHHHHhhhhhhhhcCCCceeEEEEeCCCceeeecccccccccchhhccccCCCCCcceEEEEe
Q psy1114 117 VHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAYGKPQGTVARV 196 (480)
Q Consensus 117 v~Lvs~E~~qIss~ALEAARIaaNKyl~K~~Gk~~fhlrIRv~P~hVlr~nKMls~AGADRLqtGMr~afGKP~G~vARV 196 (480)
.+|++.|.+|||++||||||+++||+|.+ +|++|||+|||+++|+|| ++++|++|||+|++|||+|
T Consensus 32 ~GL~a~e~~~i~~~qiEaaR~~i~r~lkk-----~~~i~irv~P~~pvtkkp---------~e~RMGkGKG~~~~~va~V 97 (135)
T CHL00044 32 YALQALEPAWITSRQIEAGRRAITRYARR-----GGKIWIRIFPDKPVTMRP---------AETRMGSGKGSPEYWVAVV 97 (135)
T ss_pred EEEEEccCcEECHHHHHHHHHHHHHhhhc-----CcEEEEEECCCcceEeCc---------ccccccCCCCCccEEEEEE
Confidence 68999999999999999999999999975 569999999999999999 8899999999999999999
Q ss_pred eCCCeEEEEEecCCCHHHHHHHHHHcccCCCCceEEEEe
Q psy1114 197 NIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVS 235 (480)
Q Consensus 197 ~~GqvIfsv~~k~~~~~~AkEALrrA~~KlP~~~kIvis 235 (480)
++||+||||.+. +.++|++||++|++|||++++|+..
T Consensus 98 ~~G~ilfEi~g~--~~~~ak~al~~a~~KLP~k~~~v~~ 134 (135)
T CHL00044 98 KPGRILYEMGGV--SETIARAAIKIAAYKMPIKTQFIIS 134 (135)
T ss_pred CCCcEEEEEeCC--CHHHHHHHHHHHhhcCCCcEEEEec
Confidence 999999999984 5689999999999999999999864
No 15
>COG0197 RplP Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=4.9e-25 Score=200.80 Aligned_cols=101 Identities=29% Similarity=0.296 Sum_probs=93.1
Q ss_pred ccCCCCCCCCCcCCCCCCceeEEeCCCCCCCCCCCCeEEEEecccccccchhhHHHHHhhhhhhhHhhhCCCceEEEEEe
Q psy1114 352 CKNKPYPKSRFCRGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRL 431 (480)
Q Consensus 352 ~k~kpY~r~~y~rGVP~~KI~~fdmG~kka~~~efp~~v~Lvs~E~~QirseALEAARI~aNKYl~k~~Gk~~fhlrvr~ 431 (480)
...|+|||.||++|+|+++|++||+||+ +|+.++.|++.|.+||+|+||||||||+||||.+..| ++||+
T Consensus 2 ml~Pk~tk~rk~~~g~~~~~~~~~~G~~-----~~fg~~gL~a~e~~~It~~qiEAARia~~R~lkr~g~-----~wIRv 71 (146)
T COG0197 2 MLQPKRTKYRKQHKGRGPGITIAKGGNK-----VFFGEYGLVALEPGQITARQIEAARIAANRYLKRGGG-----LWIRV 71 (146)
T ss_pred CcCCCcceeecccCCCCCCceeccCCcc-----ccceEEEEEEcccceecHHHHHHHHHHHHHHhhhcCC-----EEEEE
Confidence 4679999999999999999999999987 8999999999999999999999999999999987776 99999
Q ss_pred CCceEEEeeccccccccCccccCCceeeecCCCCchhHhhh
Q psy1114 432 HPFHVIRINKMLSCAGADRFELDGCNVKYRAEHGPLAAWKK 472 (480)
Q Consensus 432 ~PhhVlReNKMls~AGADRlq~dG~~~~~~~~~g~~~~~~~ 472 (480)
||||+||||+ ||||++ +|+ +.|.|.+++...
T Consensus 72 fP~~~~~~kp-----~e~Rmg-~Gk----G~pegwaArVkp 102 (146)
T COG0197 72 FPDKPLTEKP-----GEDRMG-KGK----GKPEGWAARVKP 102 (146)
T ss_pred cCCceeeeCC-----Cccccc-CCC----CCccEEEEEecC
Confidence 9999999999 999999 999 677776665544
No 16
>KOG3422|consensus
Probab=99.71 E-value=2.7e-17 Score=157.62 Aligned_cols=107 Identities=21% Similarity=0.208 Sum_probs=99.4
Q ss_pred EEEeeccccccchhHHHHHHHHhhhhhhhhcCCCceeEEEEeCCCceeeecccccccccchhhccccCCCCCcceEEEEe
Q psy1114 117 VHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAYGKPQGTVARV 196 (480)
Q Consensus 117 v~Lvs~E~~qIss~ALEAARIaaNKyl~K~~Gk~~fhlrIRv~P~hVlr~nKMls~AGADRLqtGMr~afGKP~G~vARV 196 (480)
-.|.+.+.+.|+|.++|++|...++++.- ..+|++|.|++|+.+++.++ -+|+|++|+|.|++|||||
T Consensus 71 Ygl~a~~~g~l~~~~~e~~r~~~~r~~~~---~~~~~iWrr~~p~~Pvt~K~---------~etRMG~GKGa~d~wva~V 138 (221)
T KOG3422|consen 71 YGLRAKSGGILDSAQFEAMRLTRARKMNP---RNNGKIWRRPAPNLPVTVKG---------NETRMGGGKGAIDHWVARV 138 (221)
T ss_pred hhheeccCceeeHHHHHHHHHHHHHhcCc---ccCccEEEEecCCCceeecC---------cceeccCCCCCcceeEEEe
Confidence 36889999999999999999888887763 45789999999999999999 7999999999999999999
Q ss_pred eCCCeEEEEEecCCCHHHHHHHHHHcccCCCCceEEEEeC
Q psy1114 197 NIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSK 236 (480)
Q Consensus 197 ~~GqvIfsv~~k~~~~~~AkEALrrA~~KlP~~~kIvis~ 236 (480)
++|+|||||.++ ..++.|++||..|++|||+++++|++.
T Consensus 139 ~~GrIl~EmgG~-~~~~~Ar~al~~aa~klp~~~efVs~~ 177 (221)
T KOG3422|consen 139 KAGRILFEMGGD-VEEEEARQALLQAAHKLPFKYEFVSEE 177 (221)
T ss_pred cCCcEEEEeCCc-ccHHHHHHHHHHHHhcCCccEEEeeHh
Confidence 999999999997 899999999999999999999999874
No 17
>PF00252 Ribosomal_L16: Ribosomal protein L16p/L10e; InterPro: IPR016180 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a structural domain with an alpha/beta-hammerhead fold, where the beta-hammerhead motif is similar to that in barrel-sandwich hybrids. Domains of this structure can be found in ribosomal proteins L10e and L16. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 2ZJR_J 1Y69_K 3DLL_J 2ZJQ_J 2ZJP_J 3PIO_J 3CF5_J 3PIP_J 2ZKR_h 3J11_O ....
Probab=99.41 E-value=2.7e-13 Score=121.50 Aligned_cols=87 Identities=30% Similarity=0.510 Sum_probs=74.5
Q ss_pred cccc-cccccCCCCCCCCCcCCCCCCceeEEeCCCCCCCCCCCCeEEEEecccccccchhhHHHHHhhhhhhhHhhhCCC
Q psy1114 345 DQNS-YRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKD 423 (480)
Q Consensus 345 parc-YR~~k~kpY~r~~y~rGVP~~KI~~fdmG~kka~~~efp~~v~Lvs~E~~QirseALEAARI~aNKYl~k~~Gk~ 423 (480)
|.+| ||. ..+ |+|.+|+.++|..++. | |+ ..|++.|..+|++++|||||++.||||.+
T Consensus 1 Pk~~kyrk-~~k-~~r~~~~~~~~~~~l~-~--g~-----------~gl~a~~~g~l~~~qlEa~R~~i~r~lkk----- 59 (133)
T PF00252_consen 1 PKRTKYRK-YQK-YPRINYGKSKPGNKLK-F--GD-----------YGLKALEPGRLTSNQLEAARIAINRYLKK----- 59 (133)
T ss_dssp TSCCSTSS-SSS--SSTTTSTTSSCSSSS-S--SS-----------EEEEESS-EEEEHHHHHHHHHHHHHHHHH-----
T ss_pred CCCCccCC-CCC-CCCCCcccccCccEEE-e--ee-----------eeEEEeeeeeechhhhHHHHHHHHHHhhh-----
Confidence 7889 998 555 9999999999988887 4 32 88999999999999999999999999976
Q ss_pred ceEEEEEeCCceEEEeeccccccccCccc
Q psy1114 424 QFHIRMRLHPFHVIRINKMLSCAGADRFE 452 (480)
Q Consensus 424 ~fhlrvr~~PhhVlReNKMls~AGADRlq 452 (480)
++.++||+||||++++++|.+.+|+|+=.
T Consensus 60 ~~~~~i~v~p~~~vTkk~~~~RMG~GKG~ 88 (133)
T PF00252_consen 60 NGKLWIRVFPHHPVTKKPLETRMGKGKGK 88 (133)
T ss_dssp TSTEEESSSCEEEEEE-SSSSSSSSSSCE
T ss_pred heeEEEEeeeeeeeeeehhhhhhccCCCC
Confidence 44499999999999999999999999933
No 18
>cd01433 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with the 30S subunit, binding of aminoacyl-tRNA and interaction with antibiotics. L16 is required for the function of elongation factor P (EF-P), a protein involved in peptide bond synthesis through the stimulation of peptidyl transferase activity by the ribosome. Mutations in L16 and the adjoining bases of 23S rRNA confer antibiotic resistance in bacteria, suggesting a role for L16 in the formation of the antibiotic binding site. The GTPase RbgA (YlqF) is essential for the assembly of the large subunit, and it is believed to regulate the incorporation of L16. L10e is the archaeal and eukaryotic cytosolic homolog of bacterial L16. L16 and L10e exhibit structural differences at the N-terminus.
Probab=99.18 E-value=1.6e-11 Score=106.88 Aligned_cols=75 Identities=28% Similarity=0.268 Sum_probs=66.0
Q ss_pred CCCCeEEEEecccccccchhhHHHHHhhhhhhhHhhhCCCceEEEEEeCCceEEEeeccccccccCccccCCceeeecCC
Q psy1114 384 EDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRFELDGCNVKYRAE 463 (480)
Q Consensus 384 ~efp~~v~Lvs~E~~QirseALEAARI~aNKYl~k~~Gk~~fhlrvr~~PhhVlReNKMls~AGADRlq~dG~~~~~~~~ 463 (480)
.+++.+..|++.|..||+|++|||||+++||||.+. +|++++|+||||++++|+ ++ .+|+--++.+
T Consensus 4 ~~~~g~~gL~a~e~~~i~~~~lEa~R~~i~r~l~k~----~~~~~ir~~p~~~vt~k~---------~~-~rMGkGKG~~ 69 (112)
T cd01433 4 KLFFGEYGLVALEPGRITAEQLEAARIAINRYLKKK----GGKLWIRVFPDHPVTKKP---------LE-TRMGKGKGKP 69 (112)
T ss_pred eeccceEEEEECcCCeECHHHHHHHHHHHHHHhhhc----CceEEEEecCCccEEECc---------cc-cccCCCCCCc
Confidence 478889999999999999999999999999999886 899999999999999999 55 8888888877
Q ss_pred CCchhHhhh
Q psy1114 464 HGPLAAWKK 472 (480)
Q Consensus 464 ~g~~~~~~~ 472 (480)
.+-.+++.+
T Consensus 70 ~~~~a~v~~ 78 (112)
T cd01433 70 EGWVARVKP 78 (112)
T ss_pred cEEEEEECC
Confidence 766655543
No 19
>TIGR01164 rplP_bact ribosomal protein L16, bacterial/organelle. This model describes bacterial and organellar ribosomal protein L16. The homologous protein of the eukaryotic cytosol is designated L10
Probab=99.02 E-value=1.4e-10 Score=103.87 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=54.6
Q ss_pred EEEecccccccchhhHHHHHhhhhhhhHhhhCCCceEEEEEeCCceEEEeeccccccccCccccCCceeeecCCCCchhH
Q psy1114 390 VHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRFELDGCNVKYRAEHGPLAA 469 (480)
Q Consensus 390 v~Lvs~E~~QirseALEAARI~aNKYl~k~~Gk~~fhlrvr~~PhhVlReNKMls~AGADRlq~dG~~~~~~~~~g~~~~ 469 (480)
.-|++.|.+|||+++|||||+++||||. .+|+++||+||||+|+++++.+ |+. .| ++.+++-.++
T Consensus 31 ~gL~a~e~~~i~~~qlEaaR~~i~r~l~-----~~~~~~irv~P~~~vt~k~~~~-----RMG-kG----KG~~~~~var 95 (126)
T TIGR01164 31 YGLQALEPGWITARQIEAARVAMTRYVK-----RGGKLWIRIFPDKPYTKKPLET-----RMG-KG----KGNPEYWVAV 95 (126)
T ss_pred EeeEECcCCeEcHHHHHHHHHHHHHHHh-----hCceEEEEECCCcCEEeCchhc-----ccc-CC----CCCCCEEEEE
Confidence 4588999999999999999999999997 5899999999999999999866 666 55 5554444443
Q ss_pred h
Q psy1114 470 W 470 (480)
Q Consensus 470 ~ 470 (480)
+
T Consensus 96 V 96 (126)
T TIGR01164 96 V 96 (126)
T ss_pred E
Confidence 3
No 20
>PRK09203 rplP 50S ribosomal protein L16; Reviewed
Probab=98.86 E-value=3.3e-09 Score=96.35 Aligned_cols=60 Identities=25% Similarity=0.199 Sum_probs=55.9
Q ss_pred eehhhhhccccccCCCcceEEEEeeCceeEEeeccCCChhHHHHHHhhcccCCCCceeEEEe
Q psy1114 266 WIIRLQTGMRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVS 327 (480)
Q Consensus 266 ~iDR~~~g~~ga~~kp~g~~arv~igq~~~s~~~~~~~~~~~~eal~r~k~kfpg~qki~~s 327 (480)
--+.++|.|.+.||+|.+.||||.+||+|++|++ .|.++++|||++|.+|+|++++|+..
T Consensus 75 t~k~~~~RMGkGKG~~~~~varVk~G~iifEi~~--~~~~~a~~al~~a~~KLP~~~kii~~ 134 (138)
T PRK09203 75 TKKPAEVRMGKGKGSPEYWVAVVKPGRILFEIAG--VSEELAREALRLAAAKLPIKTKFVKR 134 (138)
T ss_pred EcChhhccccCCCCCCcEEEEEECCCCEEEEEeC--CCHHHHHHHHHHHhccCCCcEEEEEe
Confidence 3567888999999999999999999999999999 89999999999999999999999864
No 21
>CHL00044 rpl16 ribosomal protein L16
Probab=98.81 E-value=3.3e-09 Score=96.22 Aligned_cols=55 Identities=24% Similarity=0.344 Sum_probs=50.6
Q ss_pred EEEecccccccchhhHHHHHhhhhhhhHhhhCCCceEEEEEeCCceEEEeeccccccccCccccCC
Q psy1114 390 VHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRFELDG 455 (480)
Q Consensus 390 v~Lvs~E~~QirseALEAARI~aNKYl~k~~Gk~~fhlrvr~~PhhVlReNKMls~AGADRlq~dG 455 (480)
.-|.+.|..||++++|||||+++||||.+ +|+++||+|||+++++|+ ++||+. .|
T Consensus 32 ~GL~a~e~~~i~~~qiEaaR~~i~r~lkk-----~~~i~irv~P~~pvtkkp-----~e~RMG-kG 86 (135)
T CHL00044 32 YALQALEPAWITSRQIEAGRRAITRYARR-----GGKIWIRIFPDKPVTMRP-----AETRMG-SG 86 (135)
T ss_pred EEEEEccCcEECHHHHHHHHHHHHHhhhc-----CcEEEEEECCCcceEeCc-----cccccc-CC
Confidence 35788899999999999999999999954 899999999999999998 899999 77
No 22
>KOG3422|consensus
Probab=83.95 E-value=1.9 Score=43.00 Aligned_cols=56 Identities=25% Similarity=0.285 Sum_probs=50.0
Q ss_pred hhccccccCCCcceEEEEeeCceeEEeeccCCChhHHHHHHhhcccCCCCceeEEEe
Q psy1114 271 QTGMRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVS 327 (480)
Q Consensus 271 ~~g~~ga~~kp~g~~arv~igq~~~s~~~~~~~~~~~~eal~r~k~kfpg~qki~~s 327 (480)
.|=|=|-=|-|++-||||.+|+||..|--+ -..+.+-+||.-|-+|+|+.-++.++
T Consensus 121 etRMG~GKGa~d~wva~V~~GrIl~EmgG~-~~~~~Ar~al~~aa~klp~~~efVs~ 176 (221)
T KOG3422|consen 121 ETRMGGGKGAIDHWVARVKAGRILFEMGGD-VEEEEARQALLQAAHKLPFKYEFVSE 176 (221)
T ss_pred ceeccCCCCCcceeEEEecCCcEEEEeCCc-ccHHHHHHHHHHHHhcCCccEEEeeH
Confidence 456778888899999999999999999887 78889999999999999999888754
No 23
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=58.61 E-value=18 Score=30.09 Aligned_cols=28 Identities=32% Similarity=0.555 Sum_probs=23.0
Q ss_pred EeeCCCeEEEEEecCCC-HHHHHHHHHHc
Q psy1114 195 RVNIGQPIMSVRSSDKF-KPAVIEALRRA 222 (480)
Q Consensus 195 RV~~GqvIfsv~~k~~~-~~~AkEALrrA 222 (480)
+|+.||+|++|..+++. .+.|.+.|+.|
T Consensus 43 ~V~~Gd~l~~i~~~~~~~~~~a~~~~~~a 71 (75)
T PF07831_consen 43 RVEKGDPLATIYANDEARLEEAVERLRAA 71 (75)
T ss_dssp EEBTTSEEEEEEESSSSHHHHHHHHHHHH
T ss_pred EECCCCeEEEEEcCChHHHHHHHHHHHhC
Confidence 79999999999998876 67777766654
No 24
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.76 E-value=34 Score=28.23 Aligned_cols=29 Identities=14% Similarity=0.248 Sum_probs=25.0
Q ss_pred eCceeEEeeccC--CChhHHHHHHhhcccCC
Q psy1114 290 IGQPIMSVRSSD--KFKPAVIEALRRAKFKF 318 (480)
Q Consensus 290 igq~~~s~~~~~--~~~~~~~eal~r~k~kf 318 (480)
-+.+++.+.|++ .+.+.++++|+.+.|+|
T Consensus 39 ~~~v~i~ie~~~~~~~~~~i~~~L~~~G~~~ 69 (85)
T cd04906 39 DAHIFVGVSVANGAEELAELLEDLKSAGYEV 69 (85)
T ss_pred eeEEEEEEEeCCcHHHHHHHHHHHHHCCCCe
Confidence 456889999988 78899999999999876
No 25
>PRK10380 hypothetical protein; Provisional
Probab=31.21 E-value=40 Score=27.85 Aligned_cols=48 Identities=29% Similarity=0.587 Sum_probs=35.4
Q ss_pred cCCCCCCCCCc----CCCCCCceeEEeCCCCCCCCCCCCeEEEEecccccccchhhHHHH
Q psy1114 353 KNKPYPKSRFC----RGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSEALEAG 408 (480)
Q Consensus 353 k~kpY~r~~y~----rGVP~~KI~~fdmG~kka~~~efp~~v~Lvs~E~~QirseALEAA 408 (480)
..|||||.-+| +|.|+-.|+-|.+- | |+|--=+|+|+-.- -.|||.|-
T Consensus 3 ~rPpYPReA~iV~vekG~~g~~vtwyelR---a---Dhp~P~sliSEH~t--eqEA~DAK 54 (63)
T PRK10380 3 TKPPYPREAYIVTIEKGKPGQTVTWYQLR---A---DHPKPDSLISEHPT--AQEAMDAK 54 (63)
T ss_pred CCCCCCcceEEEEeecCCCCceEEEEEee---c---CCCCCCcccccCcc--HHHHhhhh
Confidence 46899998887 89999999999885 3 66666678876432 13667664
No 26
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=30.51 E-value=66 Score=26.76 Aligned_cols=28 Identities=32% Similarity=0.555 Sum_probs=23.0
Q ss_pred EEeeCceeEEeeccCCC-hhHHHHHHhhc
Q psy1114 287 RVNIGQPIMSVRSSDKF-KPAVIEALRRA 314 (480)
Q Consensus 287 rv~igq~~~s~~~~~~~-~~~~~eal~r~ 314 (480)
+|..||+|+.|-+.++. -+.+++.|+.|
T Consensus 43 ~V~~Gd~l~~i~~~~~~~~~~a~~~~~~a 71 (75)
T PF07831_consen 43 RVEKGDPLATIYANDEARLEEAVERLRAA 71 (75)
T ss_dssp EEBTTSEEEEEEESSSSHHHHHHHHHHHH
T ss_pred EECCCCeEEEEEcCChHHHHHHHHHHHhC
Confidence 79999999999999998 56666666654
No 27
>PRK10380 hypothetical protein; Provisional
Probab=28.58 E-value=53 Score=27.18 Aligned_cols=47 Identities=30% Similarity=0.608 Sum_probs=34.9
Q ss_pred CCCCCCCcccc----cCCCCCceEEEeCCCCCCCCCCCceeEEEeeccccccchhHHHH
Q psy1114 80 KNKPYPKSRFC----RGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSEALEA 134 (480)
Q Consensus 80 k~kpY~rs~y~----rGvP~~KI~~fD~G~kka~v~efp~~v~Lvs~E~~qIss~ALEA 134 (480)
.+|||||.-+| +|.|+-.|+-|.+- | |+|--=.|+|+-.. -.|||.|
T Consensus 3 ~rPpYPReA~iV~vekG~~g~~vtwyelR---a---Dhp~P~sliSEH~t--eqEA~DA 53 (63)
T PRK10380 3 TKPPYPREAYIVTIEKGKPGQTVTWYQLR---A---DHPKPDSLISEHPT--AQEAMDA 53 (63)
T ss_pred CCCCCCcceEEEEeecCCCCceEEEEEee---c---CCCCCCcccccCcc--HHHHhhh
Confidence 46899998887 89999999999884 4 67777778776431 2355555
No 28
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.45 E-value=51 Score=25.85 Aligned_cols=30 Identities=10% Similarity=0.245 Sum_probs=24.9
Q ss_pred eeCceeEEeeccC-CChhHHHHHHhhcccCC
Q psy1114 289 NIGQPIMSVRSSD-KFKPAVIEALRRAKFKF 318 (480)
Q Consensus 289 ~igq~~~s~~~~~-~~~~~~~eal~r~k~kf 318 (480)
+.+++.++|-|++ .+.+.++++|+.+.|++
T Consensus 36 ~~~~v~v~ie~~~~~~~~~i~~~L~~~G~~~ 66 (68)
T cd04885 36 DEARVLVGIQVPDREDLAELKERLEALGYPY 66 (68)
T ss_pred CceEEEEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 4567788888887 68889999999999875
No 29
>COG0347 GlnK Nitrogen regulatory protein PII [Amino acid transport and metabolism]
Probab=27.15 E-value=4e+02 Score=24.45 Aligned_cols=86 Identities=30% Similarity=0.320 Sum_probs=53.1
Q ss_pred EEEecCCCHHHHHHHHHHcccCCCCceEEEEe---CCccccccChH-HHHHHHhcCceeecCceeEeehhhhhccccccC
Q psy1114 204 SVRSSDKFKPAVIEALRRAKFKFPGRQKIYVS---KKWGFTKYDRE-EYETLRDQNRILHDAHFDHWIIRLQTGMRGAYG 279 (480)
Q Consensus 204 sv~~k~~~~~~AkEALrrA~~KlP~~~kIvis---~~wgfT~~~~~-e~~~~~~~~~l~~dG~~vk~iDR~~~g~~ga~~ 279 (480)
++-.+++..+.++|||.-|. +|+-+..-++ +.-|+|.+=+. +|+. .+++.
T Consensus 5 ~aIiRP~kl~~vkeaL~~~G--~~gmTv~~V~G~G~Qkg~~e~yrg~~~~~--------------~~lpK---------- 58 (112)
T COG0347 5 EAIIRPFKLDDVKEALEKAG--VPGMTVTEVKGRGRQKGHTELYRGAEYEV--------------DFLPK---------- 58 (112)
T ss_pred EEEeCHHHhHHHHHHHHHcC--CCceEEEeeeeecccCCccccccchhhhh--------------hcccc----------
Confidence 34455788999999999999 7888776665 22244433322 2221 12222
Q ss_pred CCcceEEEEeeCceeEEeeccCCChhHHHHHHhhccc-CCCCceeEEEec
Q psy1114 280 KPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKF-KFPGRQKIYVSK 328 (480)
Q Consensus 280 kp~g~~arv~igq~~~s~~~~~~~~~~~~eal~r~k~-kfpg~qki~~s~ 328 (480)
+.+.|--.|...+.|+|++..+-. .=+|-=||+||.
T Consensus 59 -------------~~ieIvV~de~ve~vie~I~~~a~tG~~GDGkIFV~~ 95 (112)
T COG0347 59 -------------VKIEIVVSDEDVDEVIEAIKKAARTGKIGDGKIFVSP 95 (112)
T ss_pred -------------eEEEEEEChHHHHHHHHHHHHHHhcCCCCCeEEEEEE
Confidence 223333347778888888877665 667778888763
No 30
>PF15567 Imm19: Immunity protein 19
Probab=23.75 E-value=76 Score=27.38 Aligned_cols=64 Identities=20% Similarity=0.321 Sum_probs=43.8
Q ss_pred HHHHhhhhhhhHhhhCCCceEEEEEeCCceEE-------------------EeeccccccccCccccCCceeeecCCCCc
Q psy1114 406 EAGRICCNKYLVKNCGKDQFHIRMRLHPFHVI-------------------RINKMLSCAGADRFELDGCNVKYRAEHGP 466 (480)
Q Consensus 406 EAARI~aNKYl~k~~Gk~~fhlrvr~~PhhVl-------------------ReNKMls~AGADRlq~dG~~~~~~~~~g~ 466 (480)
|.|+..|+.||.+. +.++--+.| |-+++ .+++||++.|-=.+-.+|-.+.+.+...|
T Consensus 2 eeA~~~A~~~L~~~-~~~~~~lvv---~~~~~e~~~GW~f~~~s~~fl~tgd~~~~L~gn~pvvV~~~~g~~~~~~~~~p 77 (88)
T PF15567_consen 2 EEAAAIAEEWLDQV-GGDDMPLVV---PEAVIEFPYGWVFPYQSVEFLETGDPRDMLAGNAPVVVDKDGGEIHFLGTAPP 77 (88)
T ss_pred hHHHHHHHHHHHhh-cCCCceEEe---cccceeecceeEEEeehHHHHhcCCHHHhccCCccEEeeCCCCcEEecCCCCc
Confidence 44566688999877 545544444 44443 24566766666556568999999999999
Q ss_pred hhHhhhh
Q psy1114 467 LAAWKKV 473 (480)
Q Consensus 467 ~~~~~~~ 473 (480)
+..|.+.
T Consensus 78 ~e~~l~~ 84 (88)
T PF15567_consen 78 LEEYLED 84 (88)
T ss_pred HHHHHHH
Confidence 9888763
No 31
>cd00233 VIP2 VIP2; A family of actin-ADP-ribosylating toxin. A member of the Bacillus-prodiced vegetative insecticidal proteins (VIPs) possesses high specificity against the major insect pest, corn rootworms, and belongs to a classs of binary toxins and regulators of biological pathways distinct from classical A-B toxins. A novel family of insecticidal ADP-ribosyltransferses were isolated from Bacillus cereus during vegetative growth, where VIP1 likely targets insect cells and VIP2 ribosylates actin. VIP2 shares significant sequence similarity with enzymatic components of other binary toxins, Clostridium botulinum C2 toxin, C. perfringens iota toxin, C. piroforme toxin, C. piroforme toxin and C. difficile toxin.
Probab=23.03 E-value=2.1e+02 Score=27.55 Aligned_cols=102 Identities=20% Similarity=0.246 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHcccCCCCceEEEEeCCccccccC-----------h---HHHHHHHhcCcee-ecCceeEeehhhhhccc
Q psy1114 211 FKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYD-----------R---EEYETLRDQNRIL-HDAHFDHWIIRLQTGMR 275 (480)
Q Consensus 211 ~~~~AkEALrrA~~KlP~~~kIvis~~wgfT~~~-----------~---~e~~~~~~~~~l~-~dG~~vk~iDR~~~g~~ 275 (480)
.....++.|..|-.|+|.+.-|++-++-++..|. + ++|.++.. |.++ .+|.--.-+++.
T Consensus 63 ~l~~~I~~Ldsal~K~~~~~~i~vYRg~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~-g~~~~~~~f~STSl~~~----- 136 (201)
T cd00233 63 ELDKQIENIDSAFKKKPIPENITVYRGVDMTYLGLIFQSTDGTINKTVNKQFEAKFL-GKIYKDDGFMSTSLVSE----- 136 (201)
T ss_pred HHHHHHHHHHHHHhcCCCCCCeEEEecCchhhccccccccccccchhHHHHHHHHhC-CCeeccCCceeeccccc-----
Confidence 3567788999999999988888888887777643 2 45555554 4444 344322222222
Q ss_pred cccCCCcceEEEEeeCceeEEeeccCCChhHHHHHHhhcccCCCCceeEEEeccccc
Q psy1114 276 GAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGF 332 (480)
Q Consensus 276 ga~~kp~g~~arv~igq~~~s~~~~~~~~~~~~eal~r~k~kfpg~qki~~s~kwgf 332 (480)
.+|+. ..+++.|.....-+..-|+.| -.|||-+.|.+.+.-.|
T Consensus 137 ~~f~~----------~~i~~~I~vpkG~~g~yI~~l----S~~~~E~EvLl~rgt~f 179 (201)
T cd00233 137 SAFGG----------RPIILRLTVPKGSKGAYISPI----SGFPGELEVLLPRGSTY 179 (201)
T ss_pred ccccC----------CCEEEEEEcCCCCeeEEeccc----cCCCCceEEEECCCCEE
Confidence 16764 235666655443333344444 24677777777664444
No 32
>KOG4355|consensus
Probab=22.71 E-value=59 Score=35.81 Aligned_cols=40 Identities=43% Similarity=0.727 Sum_probs=27.4
Q ss_pred hhHHHHHH-hhcccCCCCceeEEEecccccccC-ChhhHHhhh
Q psy1114 304 KPAVIEAL-RRAKFKFPGRQKIYVSKKWGFTKY-DREEYETLR 344 (480)
Q Consensus 304 ~~~~~eal-~r~k~kfpg~qki~~s~kwgft~~-~~~~~e~lR 344 (480)
|..-+|+- +-.--|.||-|||+| |-||+.-- +..|||.=.
T Consensus 36 k~~q~ee~~~ps~s~ipgtqki~i-ktwgcshnnsdseymagq 77 (547)
T KOG4355|consen 36 KPDQIEESNRPSSSKIPGTQKIYI-KTWGCSHNNSDSEYMAGQ 77 (547)
T ss_pred CchhhhhcCCCccccCCCccEEEE-EeecccCCCchhHHHhhh
Confidence 33344443 345679999999998 78999754 455888643
No 33
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=22.48 E-value=88 Score=35.15 Aligned_cols=50 Identities=20% Similarity=0.163 Sum_probs=42.5
Q ss_pred HHHHHHHHHcccCCCCceEEEEeCCccccccChHHHHHHHhcCceeecCce
Q psy1114 213 PAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYETLRDQNRILHDAHF 263 (480)
Q Consensus 213 ~~AkEALrrA~~KlP~~~kIvis~~wgfT~~~~~e~~~~~~~~~l~~dG~~ 263 (480)
.-+.|||+.|+..+-.+..|.--..-.++.-+.++++++ ..|-|+|-|.+
T Consensus 305 ~Sv~EAL~hag~~~~~~v~i~wIdse~le~~~~~~~~~~-~dgIlVPGGFG 354 (533)
T COG0504 305 KSVIEALKHAGIALGVKVNIKWIDSEDLEEENAAELEKL-VDGILVPGGFG 354 (533)
T ss_pred HHHHHHHHhhhhhcCCceeeEEEccccccccchhhhhhc-CCEEEeCCCCC
Confidence 356899999999999999998888888888877778775 78999999864
No 34
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=22.31 E-value=1.5e+02 Score=30.92 Aligned_cols=50 Identities=32% Similarity=0.559 Sum_probs=36.6
Q ss_pred cCCCCCceEEEeCCCCCCCCCCCceeEEEeecccc------ccchhHHHHHH--HHhhhhhhh
Q psy1114 91 RGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYE------QLSSEALEAGR--ICCNKYLVK 145 (480)
Q Consensus 91 rGvP~~KI~~fD~G~kka~v~efp~~v~Lvs~E~~------qIss~ALEAAR--IaaNKyl~K 145 (480)
.++|.+.|++-|.|- .|+. -||+-. ..|++ -|++.+||+|. |.+|-.|..
T Consensus 73 g~~~~~~i~~LDIGv-GAnC-IYPliG---~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~ 130 (292)
T COG3129 73 GQIPGKNIRILDIGV-GANC-IYPLIG---VHEYGWRFVGSEIDSQSLSSAKAIISANPGLER 130 (292)
T ss_pred CCCCcCceEEEeecc-Cccc-cccccc---ceeecceeecCccCHHHHHHHHHHHHcCcchhh
Confidence 578899999999995 4554 688754 23443 38999999986 556766765
No 35
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.94 E-value=70 Score=26.39 Aligned_cols=29 Identities=14% Similarity=0.248 Sum_probs=25.0
Q ss_pred ecceeeeeccCC--CchhHHHHHHhhccccC
Q psy1114 17 IGQPIMSVRSSD--KFKPAVIEALRRAKFKF 45 (480)
Q Consensus 17 i~q~~~s~~~~~--~~~~~~~~~~~~~kfk~ 45 (480)
-|.+++.+.|+. ...+.++++|..++|+|
T Consensus 39 ~~~v~i~ie~~~~~~~~~~i~~~L~~~G~~~ 69 (85)
T cd04906 39 DAHIFVGVSVANGAEELAELLEDLKSAGYEV 69 (85)
T ss_pred eeEEEEEEEeCCcHHHHHHHHHHHHHCCCCe
Confidence 567899999988 77889999999999876
No 36
>cd01583 IPMI 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate. Aconatase-like catalytic domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes.
Probab=21.35 E-value=2.5e+02 Score=30.37 Aligned_cols=63 Identities=14% Similarity=0.176 Sum_probs=47.3
Q ss_pred cceEEEEeeCCCeEEEEEecCCCHHHHHHHHHHcccCCCCceEEEEeCCccccccChHHHHHHHhcCce
Q psy1114 189 PQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYETLRDQNRI 257 (480)
Q Consensus 189 P~G~vARV~~GqvIfsv~~k~~~~~~AkEALrrA~~KlP~~~kIvis~~wgfT~~~~~e~~~~~~~~~l 257 (480)
|..-++-+++.|+.+--+|+....+...-|-=.-..|++...+.++... +++-++++.++|.+
T Consensus 252 ~v~e~~~~~Id~v~IGSCTNgr~eDl~~AA~iLkG~kv~~~Vr~~v~P~------S~~V~~~~~~~G~~ 314 (382)
T cd01583 252 PVSEVEGIKIDQVFIGSCTNGRLEDLRAAAEILKGRKVADGVRLIVVPA------SQRVYKQAEKEGLI 314 (382)
T ss_pred ECcccCCcceeEEEEeccCCCChHHHHHHHHHhcCCCCCCCccEEEECC------CHHHHHHHHHCCcH
Confidence 4444455677888888889877777766666667888888888887655 77888899988875
No 37
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=20.23 E-value=2.4e+02 Score=25.79 Aligned_cols=45 Identities=22% Similarity=0.150 Sum_probs=33.8
Q ss_pred CCceEEEeCCCCCCCCCCC---ceeEEEeeccccccchhHHHHHHHHh
Q psy1114 95 DPKIRIFDLGKKKAKVEDF---PLCVHLVSDEYEQLSSEALEAGRICC 139 (480)
Q Consensus 95 ~~KI~~fD~G~kka~v~ef---p~~v~Lvs~E~~qIss~ALEAARIaa 139 (480)
-|.|.++|.=-+...+++- ...+.-+.+.++.||.+++||-+-|+
T Consensus 11 ~P~laIvD~kTkR~~~~~~~~~~~~~i~v~NPpG~It~el~~ai~~a~ 58 (121)
T PF04019_consen 11 IPDLAIVDGKTKREPVVEEVRKFYRVIEVKNPPGTITEELIEAIKKAL 58 (121)
T ss_pred CCCEEEEeCcccccCCcccccCCceEEEEECCCCcccHHHHHHHHHHH
Confidence 3678889976555444332 24677889999999999999999884
Done!