RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1114
(480 letters)
>d1jj2h_ d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Haloarcula
marismortui [TaxId: 2238]}
Length = 167
Score = 219 bits (559), Expect = 2e-70
Identities = 58/161 (36%), Positives = 76/161 (47%), Gaps = 3/161 (1%)
Query: 76 YRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSEALEAG 135
YR Y + + G+P KI FD+G A +P V LV ++ Q+ ALEA
Sbjct: 6 YRNSSKPAYTRREYISGIPGKKIAQFDMGNNGAG-PTYPAQVELVVEKPVQIRHNALEAA 64
Query: 136 RICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAYGKPQGTVAR 195
R+ N+Y+ + + R+R PFHVIR NK + A A GMR +GKP GT AR
Sbjct: 65 RVAANRYVQNSGAAANYKFRIRKFPFHVIRENKAAAAAAAAAAADGMRAPFGKPVGTAAR 124
Query: 196 VNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSK 236
V+ I + P V EA RRAK K I S
Sbjct: 125 VHGANHIFIAWVNP--DPNVEEAWRRAKMKVTPTINIDSSP 163
Score = 152 bits (386), Expect = 6e-45
Identities = 35/104 (33%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 349 YRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSEALEAG 408
YR Y + + G+P KI FD+G A +P V LV ++ Q+ ALEA
Sbjct: 6 YRNSSKPAYTRREYISGIPGKKIAQFDMGNNGAG-PTYPAQVELVVEKPVQIRHNALEAA 64
Query: 409 RICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRFE 452
R+ N+Y+ + + R+R PFHVIR NK + A A
Sbjct: 65 RVAANRYVQNSGAAANYKFRIRKFPFHVIRENKAAAAAAAAAAA 108
Score = 72.1 bits (177), Expect = 1e-15
Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 269 RLQTGMRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSK 328
GMR +GKP GT ARV+ I + P V EA RRAK K I S
Sbjct: 106 AAADGMRAPFGKPVGTAARVHGANHIFIAWVNP--DPNVEEAWRRAKMKVTPTINIDSSP 163
Score = 65.2 bits (159), Expect = 4e-13
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 1 MRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSK 55
MR +GKP GT ARV+ I + P V EA RRAK K I S
Sbjct: 111 MRAPFGKPVGTAARVHGANHIFIAWVNP--DPNVEEAWRRAKMKVTPTINIDSSP 163
>d1vqoh1 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 163
Score = 218 bits (558), Expect = 2e-70
Identities = 54/158 (34%), Positives = 86/158 (54%), Gaps = 1/158 (0%)
Query: 76 YRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSEALEAG 135
YR Y + + G+P KI +G+K+ +D+P+ + L+ +E QL +LEA
Sbjct: 6 YRDIDKPAYTRREYITGIPGSKIAQHKMGRKQKDADDYPVQISLIVEETVQLRHGSLEAS 65
Query: 136 RICCNKYLVKNCGKD-QFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAYGKPQGTVA 194
R+ N++L+K G++ + + +R P V+R NK + AGADR+ GMR A+GK GT A
Sbjct: 66 RLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKQATGAGADRVSDGMRAAFGKIVGTAA 125
Query: 195 RVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKI 232
RV G+ + + + + V EA RRA K +I
Sbjct: 126 RVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRI 163
Score = 149 bits (378), Expect = 1e-43
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 349 YRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSEALEAG 408
YR Y + + G+P KI +G+K+ +D+P+ + L+ +E QL +LEA
Sbjct: 6 YRDIDKPAYTRREYITGIPGSKIAQHKMGRKQKDADDYPVQISLIVEETVQLRHGSLEAS 65
Query: 409 RICCNKYLVKNCGKD-QFHIRMRLHPFHVIRINKMLSCAGADRFELDGCNVKYRAEH 464
R+ N++L+K G++ + + +R P V+R NK + AGADR +
Sbjct: 66 RLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKQATGAGADRVSDGMRAAFGKIVG 122
Score = 75.7 bits (186), Expect = 7e-17
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 269 RLQTGMRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKI 324
R+ GMR A+GK GT ARV G+ + + + + V EA RRA K +I
Sbjct: 108 RVSDGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRI 163
Score = 68.3 bits (167), Expect = 2e-14
Identities = 19/51 (37%), Positives = 26/51 (50%)
Query: 1 MRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKI 51
MR A+GK GT ARV G+ + + + + V EA RRA K +I
Sbjct: 113 MRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRI 163
>d2pa2a1 d.41.4.1 (A:40-176) Ribosomal protein L10e {Human (Homo
sapiens) [TaxId: 9606]}
Length = 137
Score = 205 bits (523), Expect = 2e-65
Identities = 113/137 (82%), Positives = 127/137 (92%)
Query: 107 KAKVEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRI 166
KAKV++FPLC H+VSDEYEQLSSEALEA RIC NKY+VK+CGKD FHIR+RLHPFHVIRI
Sbjct: 1 KAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRI 60
Query: 167 NKMLSCAGADRLQTGMRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKF 226
NKMLSCAGADRLQTGMRGA+GKPQGTVARV+IGQ IMS+R+ + K VIEALRRAKFKF
Sbjct: 61 NKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKF 120
Query: 227 PGRQKIYVSKKWGFTKY 243
PGRQKI++SKKWGFTK+
Sbjct: 121 PGRQKIHISKKWGFTKF 137
Score = 107 bits (269), Expect = 2e-28
Identities = 61/85 (71%), Positives = 70/85 (82%)
Query: 380 KAKVEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRI 439
KAKV++FPLC H+VSDEYEQLSSEALEA RIC NKY+VK+CGKD FHIR+RLHPFHVIRI
Sbjct: 1 KAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRI 60
Query: 440 NKMLSCAGADRFELDGCNVKYRAEH 464
NKMLSCAGADR + + +
Sbjct: 61 NKMLSCAGADRLQTGMRGAFGKPQG 85
Score = 104 bits (260), Expect = 3e-27
Identities = 53/67 (79%), Positives = 61/67 (91%)
Query: 269 RLQTGMRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSK 328
RLQTGMRGA+GKPQGTVARV+IGQ IMS+R+ + K VIEALRRAKFKFPGRQKI++SK
Sbjct: 71 RLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISK 130
Query: 329 KWGFTKY 335
KWGFTK+
Sbjct: 131 KWGFTKF 137
Score = 96.5 bits (240), Expect = 2e-24
Identities = 48/62 (77%), Positives = 56/62 (90%)
Query: 1 MRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFT 60
MRGA+GKPQGTVARV+IGQ IMS+R+ + K VIEALRRAKFKFPGRQKI++SKKWGFT
Sbjct: 76 MRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFT 135
Query: 61 KY 62
K+
Sbjct: 136 KF 137
>d2gyck1 d.41.4.2 (K:3-133) Ribosomal protein L16p {Escherichia coli
[TaxId: 562]}
Length = 131
Score = 44.4 bits (105), Expect = 2e-06
Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 17/118 (14%)
Query: 119 LVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRL 178
L + +L++ +EA R + + K Q I +R+ P I +
Sbjct: 31 LKAVGRGRLTARQIEAARRAMTRAV-----KRQGKIWIRVFPDKPITEKPL--------- 76
Query: 179 QTGMRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSK 236
M G + VA + G+ + + + EA + A K P + V+K
Sbjct: 77 AVRMGKGKGNVEYWVALIQPGKVLYEM--DGVPEELAREAFKLAAAKLPIKTTF-VTK 131
Score = 32.8 bits (75), Expect = 0.029
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Query: 267 IIRLQTGMRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYV 326
L M G + VA + G+ + + + EA + A K P + V
Sbjct: 73 EKPLAVRMGKGKGNVEYWVALIQPGKVLYEM--DGVPEELAREAFKLAAAKLPIKTTF-V 129
Query: 327 SK 328
+K
Sbjct: 130 TK 131
Score = 30.5 bits (69), Expect = 0.19
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 1 MRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSK 55
M G + VA + G+ + + + EA + A K P + V+K
Sbjct: 80 MGKGKGNVEYWVALIQPGKVLYEM--DGVPEELAREAFKLAAAKLPIKTTF-VTK 131
>d2j01q1 d.41.4.2 (Q:6-141) Ribosomal protein L16p {Thermus
thermophilus [TaxId: 274]}
Length = 136
Score = 41.0 bits (96), Expect = 4e-05
Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 16/114 (14%)
Query: 119 LVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRL 178
LV+ E ++++ +EA R+ ++ + I +R+ P + G +
Sbjct: 29 LVALEPAWITAQQIEAARVAMVRHF-----RRGGKIFIRIFPDKPYTKKPLEVRMGKGK- 82
Query: 179 QTGMRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKI 232
G +G VA V G+ + V + + +EALR A K P + KI
Sbjct: 83 --------GNVEGYVAVVKPGRVMFEVAGVTEEQ--AMEALRIAGHKLPIKTKI 126
Score = 29.8 bits (67), Expect = 0.30
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 251 LRDQNRILHDAHFDHWIIRLQTGMRGAYGK--PQGTVARVNIGQPIMSVRSSDKFKPAVI 308
R +I D + +R GK +G VA V G+ + V + + +
Sbjct: 53 FRRGGKIFIRIFPDKPYTKKPLEVRMGKGKGNVEGYVAVVKPGRVMFEVAGVTEEQ--AM 110
Query: 309 EALRRAKFKFPGRQKI 324
EALR A K P + KI
Sbjct: 111 EALRIAGHKLPIKTKI 126
Score = 26.3 bits (58), Expect = 4.6
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 6 GKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKI 51
G +G VA V G+ + V + + +EALR A K P + KI
Sbjct: 83 GNVEGYVAVVKPGRVMFEVAGVTEEQ--AMEALRIAGHKLPIKTKI 126
>d2f6ma1 a.2.17.1 (A:322-385) Vacuolar protein sorting-associated
protein 23, VPS23 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 64
Score = 25.0 bits (55), Expect = 4.1
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Query: 129 SEALEAGRICCNKYL--VKNCGKDQFHIRMRLHPFHVIRINKMLS 171
S L G I + ++ + + QF +R +H+ RI LS
Sbjct: 25 SRMLHRGTIPLDTFVKQGRELARQQFLVR-----WHIQRITSPLS 64
Score = 25.0 bits (55), Expect = 4.1
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Query: 402 SEALEAGRICCNKYL--VKNCGKDQFHIRMRLHPFHVIRINKMLS 444
S L G I + ++ + + QF +R +H+ RI LS
Sbjct: 25 SRMLHRGTIPLDTFVKQGRELARQQFLVR-----WHIQRITSPLS 64
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.139 0.432
Gapped
Lambda K H
0.267 0.0621 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,934,387
Number of extensions: 98343
Number of successful extensions: 261
Number of sequences better than 10.0: 1
Number of HSP's gapped: 252
Number of HSP's successfully gapped: 26
Length of query: 480
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 391
Effective length of database: 1,185,626
Effective search space: 463579766
Effective search space used: 463579766
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.2 bits)