BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11140
(89 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2EG98|PK1L3_MOUSE Polycystic kidney disease protein 1-like 3 OS=Mus musculus GN=Pkd1l3
PE=2 SV=2
Length = 2201
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 42/68 (61%)
Query: 10 YNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIER 69
Y+GGGYV LG + S + L + +WLD T+ + +E +++N N+N + AV+L++E
Sbjct: 1820 YSGGGYVVRLGRNHSAATRVLQHLEQRRWLDHCTKALFVEFTVFNANVNLLCAVTLILES 1879
Query: 70 LGSHNYLT 77
G +LT
Sbjct: 1880 SGVGTFLT 1887
>sp|Q7TN88|PK1L2_MOUSE Polycystic kidney disease protein 1-like 2 OS=Mus musculus GN=Pkd1l2
PE=2 SV=1
Length = 2461
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 6 KNIIYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSL 65
K +Y GGGYV LG+ + ++ L + + WLD TR + +E ++YN N+N V+L
Sbjct: 2098 KLTLYGGGGYVVPLGTDHQSASRILQYLFDNSWLDALTRAVFVEFTVYNANVNLFCTVTL 2157
Query: 66 MIERLGSHNYLT 77
+E G + +
Sbjct: 2158 TLETSGLGTFFS 2169
>sp|Q9P0L9|PK2L1_HUMAN Polycystic kidney disease 2-like 1 protein OS=Homo sapiens
GN=PKD2L1 PE=1 SV=1
Length = 805
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 10 YNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIE 68
Y+GGGY DL S A+ L + WLD TRV+ I+ S+YN NIN + L++E
Sbjct: 265 YSGGGYYLDLPGSRQGSAEALRALQEGLWLDRGTRVVFIDFSVYNANINLFCVLRLVVE 323
>sp|Q7Z442|PK1L2_HUMAN Polycystic kidney disease protein 1-like 2 OS=Homo sapiens GN=PKD1L2
PE=1 SV=4
Length = 2459
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 6 KNIIYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSL 65
K +Y GGGYV LG+ + L + + WLD TR + +E ++YN N+N V+L
Sbjct: 2095 KLTVYRGGGYVVPLGTDRQKHVKILRYLFDNTWLDALTRAVFVESTVYNANVNLFCIVTL 2154
Query: 66 MIE 68
+E
Sbjct: 2155 TLE 2157
>sp|P98161|PKD1_HUMAN Polycystin-1 OS=Homo sapiens GN=PKD1 PE=1 SV=3
Length = 4303
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 36/60 (60%)
Query: 9 IYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIE 68
+Y+ GGYV++LG S L + +H WLD R+R + +E + Y+P + AV+L +E
Sbjct: 3813 VYDSGGYVQELGLSLEESRDRLRFLQLHNWLDNRSRAVFLELTRYSPAVGLHAAVTLRLE 3872
>sp|O08852|PKD1_MOUSE Polycystin-1 OS=Mus musculus GN=Pkd1 PE=1 SV=2
Length = 4293
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 36/60 (60%)
Query: 9 IYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIE 68
+Y+ GGY+++LG S L + +H WLD R+R + +E + Y+P + AV+L +E
Sbjct: 3803 VYDSGGYIQELGLSLEESRARLGFLQLHNWLDSRSRAVFVELTRYSPAVGLHAAVTLRLE 3862
>sp|Q09624|PKD1_CAEEL Location of vulva defective 1 OS=Caenorhabditis elegans GN=lov-1 PE=1
SV=4
Length = 3284
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 10 YNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIER 69
Y+GGGY + +++ + +++ +W+D+ TR ++IE S YN IN V L++E
Sbjct: 2853 YSGGGYTISMSGTQAEIITLFNKLDSERWIDDHTRAVIIEFSAYNAQINYFSVVQLLVEI 2912
Query: 70 LGSHNYLTDSEV 81
S YL +S V
Sbjct: 2913 PKSGIYLPNSWV 2924
>sp|Q4GZT3|PKD2_BOVIN Polycystin-2 OS=Bos taurus GN=PKD2 PE=2 SV=1
Length = 970
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 10 YNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIE 68
Y+G GY DL + A ++ + + WLD TR I I+ ++YN NIN + L+IE
Sbjct: 388 YSGAGYYLDLSRTREETAAQVANLKKNVWLDRGTRAIFIDFTVYNANINLFCVIRLLIE 446
>sp|Q13563|PKD2_HUMAN Polycystin-2 OS=Homo sapiens GN=PKD2 PE=1 SV=3
Length = 968
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 10 YNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIE 68
Y+G GY DL + A ++ + + WLD TR I+ S+YN NIN V L++E
Sbjct: 386 YSGAGYYLDLSRTREETAAQVASLKKNVWLDRGTRATFIDFSVYNANINLFCVVRLLVE 444
>sp|Q9U1S7|PKD2_CAEEL Polycystin-2 OS=Caenorhabditis elegans GN=pkd-2 PE=1 SV=3
Length = 716
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 10 YNGGGYVKDLGSSESNMAQ-GLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIE 68
Y GGG+V+ L + S AQ ++ + ++W+D +R I+++ +LYN NIN V L+ E
Sbjct: 235 YGGGGFVQRLPVAGSTEAQSAIATLKANRWIDRGSRAIIVDFALYNANINLFCVVKLLFE 294
Query: 69 RLGSHNYLT 77
S +T
Sbjct: 295 LPASGGVIT 303
>sp|Q9NZM6|PK2L2_HUMAN Polycystic kidney disease 2-like 2 protein OS=Homo sapiens
GN=PKD2L2 PE=2 SV=2
Length = 624
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 35/69 (50%)
Query: 9 IYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIE 68
+Y GGY+ L S+S + ++ W+ TRVI I+ SLYN N+N + L+ E
Sbjct: 194 VYRNGGYIFTLSKSKSETKNKFIDLRLNSWITRGTRVIFIDFSLYNANVNLFCIIRLVAE 253
Query: 69 RLGSHNYLT 77
+ LT
Sbjct: 254 FPATGGILT 262
>sp|O35245|PKD2_MOUSE Polycystin-2 OS=Mus musculus GN=Pkd2 PE=1 SV=2
Length = 966
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 31/59 (52%)
Query: 10 YNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIE 68
Y+G GY DL + A L+ + + WLD TR I+ S+YN NIN V L+ E
Sbjct: 384 YSGAGYYLDLSRTREETAAQLAGLRRNFWLDRGTRAAFIDFSVYNANINLFCVVRLLAE 442
>sp|Q9JLG4|PK2L2_MOUSE Polycystic kidney disease 2-like 2 protein OS=Mus musculus
GN=Pkd2l2 PE=2 SV=2
Length = 621
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 34/69 (49%)
Query: 9 IYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIE 68
+Y GGY+ L S+S + ++ W+ TR + I+ SLYN N+N + L+ E
Sbjct: 194 VYRDGGYIVTLSKSKSETKAKFVDLRLNNWISRGTRAVFIDFSLYNANVNLFCIIRLLAE 253
Query: 69 RLGSHNYLT 77
+ LT
Sbjct: 254 FPATGGLLT 262
>sp|Q8TDX9|PK1L1_HUMAN Polycystic kidney disease protein 1-like 1 OS=Homo sapiens GN=PKD1L1
PE=2 SV=1
Length = 2849
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 6 KNIIYNGGG-------YVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNIN 58
+N+ NG G V LG + + LS++ W+D TR + + +LYNP
Sbjct: 2425 QNVTLNGPGGCGTREDCVLSLGRTRTEAHTALSRLRASMWIDRSTRAVSVHFTLYNPPTQ 2484
Query: 59 AIIAVSLMIERLGSHNYLTDSEV 81
+VSL +E L + + + S V
Sbjct: 2485 LFTSVSLRVEILPTGSLVPSSLV 2507
>sp|Q9NTG1|PKDRE_HUMAN Polycystic kidney disease and receptor for egg jelly-related protein
OS=Homo sapiens GN=PKDREJ PE=2 SV=2
Length = 2253
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 10 YNGGGYVKDLGSSES--NMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMI 67
Y GGY + N L ++ WLDE+T +++E + +NP+IN ++S++
Sbjct: 1876 YGSGGYALYFFPEQQRFNSTLRLKELQESNWLDEKTWAVVLELTTFNPDINLFCSISVIF 1935
Query: 68 E 68
E
Sbjct: 1936 E 1936
>sp|Q9Z0T6|PKDRE_MOUSE Polycystic kidney disease and receptor for egg jelly-related protein
OS=Mus musculus GN=Pkdrej PE=2 SV=1
Length = 2126
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 10 YNGGGYVKDL--GSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMI 67
Y GGYV G N L ++ WLDE T +++E + NP+ + + ++S++
Sbjct: 1749 YGSGGYVFYFFPGQQMFNSTVRLKELEGKNWLDELTWAVIVELTTLNPDTSLMCSISVVF 1808
Query: 68 E 68
E
Sbjct: 1809 E 1809
>sp|B5XL08|DEOB_STRPZ Phosphopentomutase OS=Streptococcus pyogenes serotype M49 (strain
NZ131) GN=deoB PE=3 SV=1
Length = 403
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 2 SVGPKNIIYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTR 44
+VG N I+NG G D+G ++SN + G+ +I L E T+
Sbjct: 246 AVGKINDIFNGSGITNDMGHNKSN-SHGIDTLIKTLQLPEFTK 287
>sp|Q1JM72|DEOB_STRPC Phosphopentomutase OS=Streptococcus pyogenes serotype M12 (strain
MGAS9429) GN=deoB PE=3 SV=1
Length = 403
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 2 SVGPKNIIYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTR 44
+VG N I+NG G D+G ++SN + G+ +I L E T+
Sbjct: 246 AVGKINDIFNGSGITNDMGHNKSN-SHGIDTLIKTLQLPEFTK 287
>sp|Q1JC88|DEOB_STRPB Phosphopentomutase OS=Streptococcus pyogenes serotype M12 (strain
MGAS2096) GN=deoB PE=3 SV=1
Length = 403
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 2 SVGPKNIIYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTR 44
+VG N I+NG G D+G ++SN + G+ +I L E T+
Sbjct: 246 AVGKINDIFNGSGITNDMGHNKSN-SHGIDTLIKTLQLPEFTK 287
>sp|P0DA61|DEOB_STRPQ Phosphopentomutase OS=Streptococcus pyogenes serotype M3 (strain
SSI-1) GN=deoB PE=3 SV=1
Length = 403
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 2 SVGPKNIIYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTR 44
+VG N I+NG G D+G ++SN + G+ +I L E T+
Sbjct: 246 AVGKINDIFNGSGITNDMGHNKSN-SHGIDTLIKTLQLPEFTK 287
>sp|Q1JHB7|DEOB_STRPD Phosphopentomutase OS=Streptococcus pyogenes serotype M2 (strain
MGAS10270) GN=deoB PE=3 SV=1
Length = 403
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 2 SVGPKNIIYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTR 44
+VG N I+NG G D+G ++SN + G+ +I L E T+
Sbjct: 246 AVGKINDIFNGSGITNDMGHNKSN-SHGIDTLIKTLQLPEFTK 287
>sp|P0DA60|DEOB_STRP3 Phosphopentomutase OS=Streptococcus pyogenes serotype M3 (strain
ATCC BAA-595 / MGAS315) GN=deoB PE=3 SV=1
Length = 403
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 2 SVGPKNIIYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTR 44
+VG N I+NG G D+G ++SN + G+ +I L E T+
Sbjct: 246 AVGKINDIFNGSGITNDMGHNKSN-SHGIDTLIKTLQLPEFTK 287
>sp|P63927|DEOB_STRP1 Phosphopentomutase OS=Streptococcus pyogenes serotype M1 GN=deoB
PE=3 SV=1
Length = 403
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 2 SVGPKNIIYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTR 44
+VG N I+NG G D+G ++SN + G+ +I L E T+
Sbjct: 246 AVGKINDIFNGSGITNDMGHNKSN-SHGIDTLIKTLQLPEFTK 287
>sp|Q1J736|DEOB_STRPF Phosphopentomutase OS=Streptococcus pyogenes serotype M4 (strain
MGAS10750) GN=deoB PE=3 SV=1
Length = 403
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 2 SVGPKNIIYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTR 44
+VG N I+NG G D+G ++SN + G+ +I L E T+
Sbjct: 246 AVGKINDIFNGSGITNDMGHNKSN-SHGIDTLIKTLQLPEFTK 287
>sp|Q8P1C4|DEOB_STRP8 Phosphopentomutase OS=Streptococcus pyogenes serotype M18 (strain
MGAS8232) GN=deoB PE=3 SV=1
Length = 403
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 2 SVGPKNIIYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTR 44
+VG N I+NG G D+G ++SN + G+ +I L E T+
Sbjct: 246 AVGKINDIFNGSGITNDMGHNKSN-SHGIDTLIKTLQLPEFTK 287
>sp|Q48U17|DEOB_STRPM Phosphopentomutase OS=Streptococcus pyogenes serotype M28 (strain
MGAS6180) GN=deoB PE=3 SV=1
Length = 403
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 2 SVGPKNIIYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTR 44
+VG N I+NG G D+G ++SN + G+ +I L E T+
Sbjct: 246 AVGKINDIFNGSGITNDMGHNKSN-SHGIDTLIKTLQLPEFTK 287
>sp|A2RF12|DEOB_STRPG Phosphopentomutase OS=Streptococcus pyogenes serotype M5 (strain
Manfredo) GN=deoB PE=3 SV=1
Length = 403
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 2 SVGPKNIIYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTR 44
+VG N I+NG G D+G ++SN + G+ +I L E T+
Sbjct: 246 AVGKINDIFNGSGITNDMGHNKSN-SHGIDTLIKTLQLPEFTK 287
>sp|Q5XCL5|DEOB_STRP6 Phosphopentomutase OS=Streptococcus pyogenes serotype M6 (strain
ATCC BAA-946 / MGAS10394) GN=deoB PE=3 SV=1
Length = 403
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 2 SVGPKNIIYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTR 44
+VG N I+NG G D+G ++SN + G+ +I L E T+
Sbjct: 246 AVGKINDIFNGSGITNDMGHNKSN-SHGIDTLIKTLQLPEFTK 287
>sp|Q2GGT6|RLME_EHRCR Ribosomal RNA large subunit methyltransferase E OS=Ehrlichia
chaffeensis (strain Arkansas) GN=rlmE PE=3 SV=1
Length = 212
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 11/57 (19%)
Query: 9 IYNGGGYVKDLGSSESNMAQGLSQMIIH-----------KWLDERTRVILIECSLYN 54
I+ G YV DLGSS +Q +Q + H + +D VI I+C + N
Sbjct: 41 IFKKGQYVLDLGSSPGGWSQFAAQRVSHNNNNPVFAVDIQNMDAIPNVIFIQCDIIN 97
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,774,904
Number of Sequences: 539616
Number of extensions: 1002320
Number of successful extensions: 2660
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2643
Number of HSP's gapped (non-prelim): 30
length of query: 89
length of database: 191,569,459
effective HSP length: 59
effective length of query: 30
effective length of database: 159,732,115
effective search space: 4791963450
effective search space used: 4791963450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)