Query psy11140
Match_columns 89
No_of_seqs 109 out of 302
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 19:01:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11140.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11140hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h0d_A CTSR; protein DNA compl 78.4 2.2 7.5E-05 29.1 3.6 21 22-42 93-113 (155)
2 2oz6_A Virulence factor regula 55.6 9.3 0.00032 24.4 2.9 30 19-48 174-203 (207)
3 2fmy_A COOA, carbon monoxide o 54.4 12 0.00042 24.3 3.3 30 19-48 177-207 (220)
4 3ryp_A Catabolite gene activat 54.3 10 0.00035 24.3 2.9 30 19-48 177-206 (210)
5 1ub9_A Hypothetical protein PH 54.2 15 0.00053 20.9 3.5 24 18-41 39-62 (100)
6 3e6c_C CPRK, cyclic nucleotide 52.5 14 0.00047 24.7 3.5 29 20-48 188-216 (250)
7 2qvo_A Uncharacterized protein 52.3 18 0.00062 21.1 3.6 33 18-50 39-73 (95)
8 4ev0_A Transcription regulator 52.0 11 0.00039 24.2 2.9 30 19-48 173-202 (216)
9 3iwz_A CAP-like, catabolite ac 51.3 12 0.00041 24.3 2.9 30 19-48 197-226 (230)
10 2fbi_A Probable transcriptiona 51.1 16 0.00056 21.9 3.4 33 19-51 60-97 (142)
11 3kcc_A Catabolite gene activat 50.8 15 0.00052 24.9 3.5 30 19-48 227-256 (260)
12 3hsr_A HTH-type transcriptiona 50.7 11 0.00036 23.2 2.5 32 19-50 60-96 (140)
13 3dkw_A DNR protein; CRP-FNR, H 50.6 11 0.00036 24.6 2.5 30 19-48 188-217 (227)
14 3e97_A Transcriptional regulat 50.3 13 0.00045 24.3 3.0 30 19-48 185-214 (231)
15 3d0s_A Transcriptional regulat 49.4 13 0.00045 24.2 2.9 30 19-48 187-216 (227)
16 2zcw_A TTHA1359, transcription 49.1 14 0.00047 23.8 2.9 30 19-48 156-185 (202)
17 3dv8_A Transcriptional regulat 49.0 14 0.00047 23.8 2.9 30 19-48 179-208 (220)
18 2nnn_A Probable transcriptiona 47.9 20 0.00068 21.5 3.4 33 18-50 61-98 (140)
19 3b02_A Transcriptional regulat 47.7 12 0.00042 23.9 2.5 30 19-48 149-178 (195)
20 3bro_A Transcriptional regulat 46.7 16 0.00053 22.0 2.7 32 19-50 60-96 (141)
21 2gxg_A 146AA long hypothetical 46.2 20 0.00068 21.7 3.2 33 18-50 59-96 (146)
22 3tgn_A ADC operon repressor AD 45.9 12 0.00043 22.7 2.2 24 19-42 61-84 (146)
23 2gau_A Transcriptional regulat 45.8 19 0.00063 23.5 3.2 30 19-48 190-219 (232)
24 1jgs_A Multiple antibiotic res 45.5 23 0.0008 21.2 3.4 32 19-50 58-94 (138)
25 3oop_A LIN2960 protein; protei 45.3 15 0.00052 22.4 2.5 23 19-41 61-83 (143)
26 3bdd_A Regulatory protein MARR 45.1 18 0.00063 21.7 2.9 24 19-42 55-78 (142)
27 1x60_A Sporulation-specific N- 44.4 16 0.00055 20.7 2.4 27 11-37 6-34 (79)
28 3la7_A Global nitrogen regulat 44.4 17 0.0006 24.2 2.9 30 19-48 203-232 (243)
29 3eco_A MEPR; mutlidrug efflux 44.2 19 0.00063 21.8 2.8 34 18-51 56-94 (139)
30 1lj9_A Transcriptional regulat 43.5 25 0.00087 21.2 3.4 33 18-50 52-89 (144)
31 3s2w_A Transcriptional regulat 43.1 18 0.00063 22.5 2.7 33 19-51 74-111 (159)
32 2frh_A SARA, staphylococcal ac 42.9 14 0.0005 22.5 2.2 33 18-50 62-99 (127)
33 3f3x_A Transcriptional regulat 42.7 23 0.00077 21.6 3.1 33 19-51 60-97 (144)
34 1zyb_A Transcription regulator 42.7 19 0.00066 23.7 2.9 30 19-48 196-225 (232)
35 2eth_A Transcriptional regulat 42.6 30 0.001 21.4 3.7 32 19-50 68-104 (154)
36 2pex_A Transcriptional regulat 42.6 17 0.00057 22.4 2.5 32 19-50 71-107 (153)
37 2bgc_A PRFA; bacterial infecti 42.3 19 0.00065 23.8 2.8 30 19-48 179-209 (238)
38 3e6m_A MARR family transcripti 41.6 23 0.00078 22.1 3.0 33 19-51 77-114 (161)
39 2pg4_A Uncharacterized protein 41.3 18 0.0006 21.0 2.3 32 19-51 40-76 (95)
40 2hr3_A Probable transcriptiona 41.2 19 0.00064 21.9 2.5 25 18-42 59-83 (147)
41 3deu_A Transcriptional regulat 40.7 22 0.00074 22.7 2.8 33 19-51 78-115 (166)
42 2dgp_A Bruno-like 4, RNA bindi 40.7 39 0.0013 19.5 3.8 39 14-52 56-94 (106)
43 2hzt_A Putative HTH-type trans 40.6 31 0.0011 20.5 3.4 32 20-51 39-75 (107)
44 3nrv_A Putative transcriptiona 39.9 15 0.00053 22.4 2.0 25 18-42 63-87 (148)
45 3nmr_A Cugbp ELAV-like family 39.6 31 0.0011 21.2 3.4 31 21-51 144-174 (175)
46 1tbx_A ORF F-93, hypothetical 39.3 36 0.0012 19.6 3.5 31 19-49 36-68 (99)
47 2rdp_A Putative transcriptiona 39.2 28 0.00096 21.1 3.1 32 19-50 66-102 (150)
48 3bpv_A Transcriptional regulat 38.9 29 0.00098 20.7 3.1 32 19-50 53-89 (138)
49 2fbh_A Transcriptional regulat 38.6 19 0.00065 21.7 2.2 24 19-42 62-85 (146)
50 2a61_A Transcriptional regulat 38.5 29 0.00099 20.9 3.1 24 19-42 57-80 (145)
51 4hbl_A Transcriptional regulat 37.8 21 0.0007 22.1 2.3 33 19-51 65-102 (149)
52 3cjn_A Transcriptional regulat 37.5 33 0.0011 21.2 3.3 23 19-41 76-98 (162)
53 1z91_A Organic hydroperoxide r 37.5 25 0.00087 21.3 2.7 32 19-50 64-100 (147)
54 2bv6_A MGRA, HTH-type transcri 37.4 20 0.00068 21.7 2.2 32 19-50 61-97 (142)
55 4aik_A Transcriptional regulat 37.3 25 0.00084 22.2 2.7 33 19-51 56-93 (151)
56 3bj6_A Transcriptional regulat 37.3 20 0.00068 21.9 2.2 24 19-42 64-87 (152)
57 1z7u_A Hypothetical protein EF 37.3 27 0.00094 21.0 2.8 33 18-50 44-82 (112)
58 2dnh_A Bruno-like 5, RNA bindi 37.0 35 0.0012 19.6 3.2 39 14-52 57-95 (105)
59 2nyx_A Probable transcriptiona 36.8 35 0.0012 21.5 3.4 33 19-51 69-106 (168)
60 2lkz_A RNA-binding protein 5; 36.6 61 0.0021 19.0 4.3 36 14-51 54-92 (95)
61 3k0l_A Repressor protein; heli 36.1 20 0.00068 22.5 2.0 33 19-51 70-107 (162)
62 3fm5_A Transcriptional regulat 35.8 26 0.00089 21.5 2.5 24 19-42 64-87 (150)
63 3bja_A Transcriptional regulat 35.7 26 0.00088 20.9 2.5 32 19-50 57-93 (139)
64 1sfx_A Conserved hypothetical 35.4 61 0.0021 18.2 4.1 25 18-42 43-67 (109)
65 3dfg_A Xcrecx, regulatory prot 35.2 23 0.00079 23.3 2.3 23 20-42 45-67 (162)
66 2x4h_A Hypothetical protein SS 35.1 32 0.0011 20.9 2.9 27 18-44 40-66 (139)
67 2heo_A Z-DNA binding protein 1 35.0 23 0.00079 19.7 2.0 24 18-41 34-57 (67)
68 1s3j_A YUSO protein; structura 34.6 30 0.001 21.1 2.7 25 18-42 60-84 (155)
69 3e3v_A Regulatory protein RECX 34.1 24 0.00083 23.5 2.3 22 20-41 46-67 (177)
70 4b8x_A SCO5413, possible MARR- 33.7 31 0.001 21.6 2.7 33 19-51 61-98 (147)
71 3c1d_A Protein ORAA, regulator 33.3 25 0.00084 23.0 2.2 22 21-42 44-65 (159)
72 1ft9_A Carbon monoxide oxidati 33.3 23 0.0008 23.0 2.1 27 19-45 173-199 (222)
73 3g3z_A NMB1585, transcriptiona 33.2 21 0.00071 21.7 1.8 23 19-41 55-77 (145)
74 1ku9_A Hypothetical protein MJ 32.6 31 0.0011 20.6 2.5 32 18-49 50-86 (152)
75 2oqg_A Possible transcriptiona 32.1 58 0.002 19.0 3.6 31 18-48 43-75 (114)
76 3gon_A Phosphomevalonate kinas 31.7 42 0.0014 23.3 3.3 27 11-37 294-320 (335)
77 3nqo_A MARR-family transcripti 31.2 48 0.0016 21.5 3.4 33 19-51 67-104 (189)
78 3d5l_A Regulatory protein RECX 31.1 28 0.00097 24.0 2.3 22 20-41 89-110 (221)
79 2qww_A Transcriptional regulat 31.1 34 0.0012 20.9 2.5 23 19-41 65-87 (154)
80 2fa5_A Transcriptional regulat 30.7 25 0.00087 21.7 1.9 25 18-42 72-96 (162)
81 3u2r_A Regulatory protein MARR 30.1 31 0.0011 21.6 2.2 33 19-51 72-109 (168)
82 1uta_A FTSN, MSGA, cell divisi 30.0 24 0.00083 20.2 1.6 27 11-37 6-34 (81)
83 2d1h_A ST1889, 109AA long hypo 29.7 33 0.0011 19.5 2.2 25 18-42 45-69 (109)
84 2vn2_A DNAD, chromosome replic 28.8 44 0.0015 20.8 2.7 26 19-44 61-86 (128)
85 1c4q_A Protein (shiga-like tox 28.7 42 0.0014 19.5 2.4 15 47-62 8-22 (69)
86 2fsw_A PG_0823 protein; alpha- 28.7 63 0.0022 19.1 3.4 23 20-42 50-72 (107)
87 3cdh_A Transcriptional regulat 28.5 40 0.0014 20.6 2.5 24 19-42 67-90 (155)
88 3ech_A MEXR, multidrug resista 28.4 22 0.00075 21.6 1.2 24 19-42 61-84 (142)
89 2cfx_A HTH-type transcriptiona 28.2 34 0.0012 21.3 2.2 26 18-43 28-53 (144)
90 2pn6_A ST1022, 150AA long hypo 27.4 47 0.0016 20.6 2.7 25 18-42 26-50 (150)
91 1o5l_A Transcriptional regulat 25.3 15 0.00051 23.9 0.0 30 18-47 173-202 (213)
92 2w25_A Probable transcriptiona 24.8 42 0.0014 21.0 2.1 24 18-41 30-53 (150)
93 3cuo_A Uncharacterized HTH-typ 24.8 47 0.0016 18.7 2.2 24 18-41 47-70 (99)
94 2b0l_A GTP-sensing transcripti 24.2 50 0.0017 19.9 2.3 25 18-42 52-76 (102)
95 1qbj_A Protein (double-strande 23.5 51 0.0017 19.4 2.2 24 18-41 36-59 (81)
96 4aw7_A GH86A beta-porphyranase 23.1 1.4E+02 0.0049 24.1 5.3 45 43-87 543-589 (591)
97 1hsj_A Fusion protein consisti 22.9 50 0.0017 24.3 2.5 34 18-51 429-467 (487)
98 2dbb_A Putative HTH-type trans 22.8 40 0.0014 21.0 1.7 24 18-41 32-55 (151)
99 2pg9_A Phosphomevalonate kinas 22.6 77 0.0026 22.8 3.4 28 12-39 297-324 (337)
100 1yyv_A Putative transcriptiona 22.4 68 0.0023 20.0 2.8 32 20-51 60-96 (131)
101 1b7f_A Protein (SXL-lethal pro 22.3 91 0.0031 18.8 3.4 37 14-51 132-168 (168)
102 2wte_A CSA3; antiviral protein 22.0 38 0.0013 23.7 1.6 26 19-44 176-201 (244)
103 3kp7_A Transcriptional regulat 21.3 33 0.0011 21.0 1.1 24 19-42 61-84 (151)
104 1p4x_A Staphylococcal accessor 21.2 48 0.0016 23.2 2.0 34 18-51 183-221 (250)
105 2p8t_A Hypothetical protein PH 20.9 73 0.0025 22.1 2.9 31 18-48 39-69 (200)
106 2e1c_A Putative HTH-type trans 20.9 72 0.0025 20.8 2.7 26 18-43 50-75 (171)
107 1q1h_A TFE, transcription fact 20.9 49 0.0017 19.5 1.8 25 18-42 42-66 (110)
108 2htj_A P fimbrial regulatory p 20.8 39 0.0013 19.0 1.2 22 19-40 24-45 (81)
109 3k17_A LIN0012 protein; protei 20.4 87 0.003 22.9 3.4 27 12-38 318-344 (365)
110 1qgp_A Protein (double strande 20.3 46 0.0016 19.1 1.5 24 18-41 40-63 (77)
No 1
>3h0d_A CTSR; protein DNA complex, winged HTH domain, 4-helix bundle, DNA tandem repeat, transcription/DNA complex; HET: DNA; 2.40A {Bacillus stearothermophilus}
Probab=78.43 E-value=2.2 Score=29.13 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=18.4
Q ss_pred CHHHHHHHHHhhhhCCcccCC
Q psy11140 22 SESNMAQGLSQMIIHKWLDER 42 (89)
Q Consensus 22 ~~~~a~~~l~~L~~~~WiD~~ 42 (89)
+..+|...|+.|.+++.|++.
T Consensus 93 s~~~a~~ii~~L~e~~~it~R 113 (155)
T 3h0d_A 93 SQSSAEDVIKRLMEEKVISER 113 (155)
T ss_dssp CHHHHHHHHHHHHHTTSSCHH
T ss_pred CHHHHHHHHHHHHHcCCCCHH
Confidence 578999999999999998764
No 2
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=55.55 E-value=9.3 Score=24.45 Aligned_cols=30 Identities=10% Similarity=0.252 Sum_probs=24.1
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCCccEEEE
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDERTRVILI 48 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~TRav~v 48 (89)
||-+++..-..++.|++.+||+..-+.+.|
T Consensus 174 lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i 203 (207)
T 2oz6_A 174 VGCSREMVGRVLKSLEEQGLVHVKGKTMVV 203 (207)
T ss_dssp HTSCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred hCCCHHHHHHHHHHHHHCCCEEecCCEEEE
Confidence 466778888999999999999887666544
No 3
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=54.38 E-value=12 Score=24.30 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=23.8
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCC-ccEEEE
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDER-TRVILI 48 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~-TRav~v 48 (89)
||.+++..-..++.|++.+||... -+.+.|
T Consensus 177 lg~sr~tvsR~l~~l~~~g~I~~~~~~~i~i 207 (220)
T 2fmy_A 177 LGTTRQTVSVLLNDFKKMGILERVNQRTLLL 207 (220)
T ss_dssp HTSCHHHHHHHHHHHHHTTSEEESSSSEEEE
T ss_pred hCCcHHHHHHHHHHHHHCCCEEEcCCCEEEE
Confidence 356677888999999999999886 665544
No 4
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=54.26 E-value=10 Score=24.29 Aligned_cols=30 Identities=13% Similarity=0.290 Sum_probs=25.1
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCCccEEEE
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDERTRVILI 48 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~TRav~v 48 (89)
||.+++..-..|+.|++.++|+..-+-+.|
T Consensus 177 lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i 206 (210)
T 3ryp_A 177 VGCSRETVGRILKMLEDQNLISAHGKTIVV 206 (210)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred hCCcHHHHHHHHHHHHHCCcEEeCCCEEEE
Confidence 467788889999999999999987776654
No 5
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=54.19 E-value=15 Score=20.91 Aligned_cols=24 Identities=8% Similarity=0.086 Sum_probs=20.9
Q ss_pred EcCCCHHHHHHHHHhhhhCCcccC
Q psy11140 18 DLGSSESNMAQGLSQMIIHKWLDE 41 (89)
Q Consensus 18 ~L~~~~~~a~~~l~~L~~~~WiD~ 41 (89)
.|+-++......|+.|.+.+||.+
T Consensus 39 ~l~is~~tvs~~l~~L~~~gli~~ 62 (100)
T 1ub9_A 39 VLDLTPGNLDSHIRVLERNGLVKT 62 (100)
T ss_dssp HTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHCcCHHHHHHHHHHHHHCCCEEE
Confidence 357788899999999999999975
No 6
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=52.53 E-value=14 Score=24.67 Aligned_cols=29 Identities=17% Similarity=0.351 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHhhhhCCcccCCccEEEE
Q psy11140 20 GSSESNMAQGLSQMIIHKWLDERTRVILI 48 (89)
Q Consensus 20 ~~~~~~a~~~l~~L~~~~WiD~~TRav~v 48 (89)
|.+++..-..|+.|++.++|+..-+-+.|
T Consensus 188 G~sr~tvsR~l~~L~~~g~I~~~~~~i~i 216 (250)
T 3e6c_C 188 GVHHVTVSRVLASLKRENILDKKKNKIIV 216 (250)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEECSSEEEE
T ss_pred CCcHHHHHHHHHHHHHCCCeEeCCCEEEE
Confidence 55667788899999999999987776654
No 7
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=52.29 E-value=18 Score=21.05 Aligned_cols=33 Identities=15% Similarity=0.100 Sum_probs=24.3
Q ss_pred EcCCCHHHHHHHHHhhhhCCcc--cCCccEEEEEE
Q psy11140 18 DLGSSESNMAQGLSQMIIHKWL--DERTRVILIEC 50 (89)
Q Consensus 18 ~L~~~~~~a~~~l~~L~~~~Wi--D~~TRav~vEf 50 (89)
.++.++......|+.|.+.+|| ...-|...+..
T Consensus 39 ~l~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~L 73 (95)
T 2qvo_A 39 KVNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRL 73 (95)
T ss_dssp HSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred HHCcCHHHHHHHHHHHHHCcCccCCCCCCeEEEEE
Confidence 3567889999999999999999 22335555544
No 8
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=52.01 E-value=11 Score=24.19 Aligned_cols=30 Identities=10% Similarity=0.123 Sum_probs=24.9
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCCccEEEE
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDERTRVILI 48 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~TRav~v 48 (89)
||.+++..-..++.|++.++|+..-+-+.|
T Consensus 173 lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i 202 (216)
T 4ev0_A 173 AGTSRETVSRVLHALAEEGVVRLGPGTVEV 202 (216)
T ss_dssp HTSCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred hCCCHHHHHHHHHHHHHCCCEEecCCEEEE
Confidence 477888899999999999999877666544
No 9
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=51.29 E-value=12 Score=24.32 Aligned_cols=30 Identities=17% Similarity=0.333 Sum_probs=25.0
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCCccEEEE
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDERTRVILI 48 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~TRav~v 48 (89)
||.+++..-..|+.|++.++|+..-+-+.|
T Consensus 197 lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i 226 (230)
T 3iwz_A 197 VGCSREMAGRVLKKLQADGLLHARGKTVVL 226 (230)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred hCCcHHHHHHHHHHHHHCCCEEECCCEEEE
Confidence 467788889999999999999987776654
No 10
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=51.13 E-value=16 Score=21.90 Aligned_cols=33 Identities=9% Similarity=0.074 Sum_probs=25.7
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCC-----ccEEEEEEe
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDER-----TRVILIECS 51 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~-----TRav~vEft 51 (89)
++.++......++.|.+.+||.+. -|...+.+|
T Consensus 60 l~~s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT 97 (142)
T 2fbi_A 60 ACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLT 97 (142)
T ss_dssp TTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEEC
T ss_pred HCCCHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEEC
Confidence 577888999999999999999764 356655543
No 11
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=50.76 E-value=15 Score=24.88 Aligned_cols=30 Identities=13% Similarity=0.290 Sum_probs=25.2
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCCccEEEE
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDERTRVILI 48 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~TRav~v 48 (89)
||.+++..-..|+.|++.++|+..-+.+.|
T Consensus 227 lG~sr~tvsR~l~~L~~~GlI~~~~~~i~I 256 (260)
T 3kcc_A 227 VGCSRETVGRILKMLEDQNLISAHGKTIVV 256 (260)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEECSSEEEE
T ss_pred hCCCHHHHHHHHHHHHHCCCEEEcCCEEEE
Confidence 467778889999999999999988776654
No 12
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=50.68 E-value=11 Score=23.18 Aligned_cols=32 Identities=9% Similarity=0.096 Sum_probs=24.0
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCCc-----cEEEEEE
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDERT-----RVILIEC 50 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~T-----Rav~vEf 50 (89)
++.++......++.|.+.+||.+.. |.+.+..
T Consensus 60 l~~~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~L 96 (140)
T 3hsr_A 60 VFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISL 96 (140)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEE
T ss_pred HCCChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeE
Confidence 5678899999999999999997643 5555544
No 13
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=50.56 E-value=11 Score=24.55 Aligned_cols=30 Identities=13% Similarity=0.075 Sum_probs=24.8
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCCccEEEE
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDERTRVILI 48 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~TRav~v 48 (89)
||.+++..-..++.|++.+||+..-+-+.|
T Consensus 188 lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i 217 (227)
T 3dkw_A 188 LSIQPETFSRIMHRLGDEGIIHLDGREISI 217 (227)
T ss_dssp TTSCHHHHHHHHHHHHHHTSEEESSSCEEE
T ss_pred hCCCHHHHHHHHHHHHHCCcEEecCCEEEE
Confidence 566778888999999999999887776554
No 14
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=50.32 E-value=13 Score=24.25 Aligned_cols=30 Identities=20% Similarity=0.317 Sum_probs=25.0
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCCccEEEE
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDERTRVILI 48 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~TRav~v 48 (89)
||.+++..-..|+.|++.++|+..-+-+.|
T Consensus 185 lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i 214 (231)
T 3e97_A 185 TSSSRETVSRVLKRLEAHNILEVSPRSVTL 214 (231)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEECSSCEEE
T ss_pred hCCcHHHHHHHHHHHHHCCcEEecCCEEEE
Confidence 567888889999999999999887766544
No 15
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=49.45 E-value=13 Score=24.22 Aligned_cols=30 Identities=20% Similarity=0.514 Sum_probs=23.6
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCCccEEEE
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDERTRVILI 48 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~TRav~v 48 (89)
||.+++..-..|+.|++.++|+..-+.+.|
T Consensus 187 lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i 216 (227)
T 3d0s_A 187 VGASRETVNKALADFAHRGWIRLEGKSVLI 216 (227)
T ss_dssp HTSCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred hCCcHHHHHHHHHHHHHCCCEEecCCEEEE
Confidence 456667788899999999999876666544
No 16
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=49.12 E-value=14 Score=23.76 Aligned_cols=30 Identities=10% Similarity=0.238 Sum_probs=24.0
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCCccEEEE
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDERTRVILI 48 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~TRav~v 48 (89)
||.+++..-..|+.|++.+||+..-+.+.|
T Consensus 156 lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i 185 (202)
T 2zcw_A 156 VGSVRETVTKVIGELAREGYIRSGYGKIQL 185 (202)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred hCCCHHHHHHHHHHHHHCCCEEeCCCEEEE
Confidence 466778888999999999999876665544
No 17
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=49.04 E-value=14 Score=23.84 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=24.6
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCCccEEEE
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDERTRVILI 48 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~TRav~v 48 (89)
||-+++..-..++.|++.++|+..-+-+.|
T Consensus 179 lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i 208 (220)
T 3dv8_A 179 LGSHREVITRMLRYFQVEGLVKLSRGKITI 208 (220)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred hCCCHHHHHHHHHHHHHCCCEEeCCCEEEE
Confidence 577888899999999999999876665543
No 18
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=47.91 E-value=20 Score=21.46 Aligned_cols=33 Identities=6% Similarity=0.073 Sum_probs=25.4
Q ss_pred EcCCCHHHHHHHHHhhhhCCcccCC-----ccEEEEEE
Q psy11140 18 DLGSSESNMAQGLSQMIIHKWLDER-----TRVILIEC 50 (89)
Q Consensus 18 ~L~~~~~~a~~~l~~L~~~~WiD~~-----TRav~vEf 50 (89)
.++.++......++.|.+.+||.+. -|...+..
T Consensus 61 ~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~l 98 (140)
T 2nnn_A 61 LTAMDAATIKGVVERLDKRGLIQRSADPDDGRRLLVSL 98 (140)
T ss_dssp HTTCCHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEE
Confidence 3577889999999999999999763 35555543
No 19
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=47.74 E-value=12 Score=23.94 Aligned_cols=30 Identities=10% Similarity=0.148 Sum_probs=23.9
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCCccEEEE
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDERTRVILI 48 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~TRav~v 48 (89)
||.+++..-..|+.|++.+||+..-+.+.|
T Consensus 149 lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i 178 (195)
T 3b02_A 149 TASIRESVSKVLADLRREGLIATAYRRVYL 178 (195)
T ss_dssp TTSCHHHHHHHHHHHHHHTSEEEETTEEEE
T ss_pred hCCCHHHHHHHHHHHHHCCCEEecCCEEEE
Confidence 466778888999999999999876665543
No 20
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=46.67 E-value=16 Score=22.04 Aligned_cols=32 Identities=22% Similarity=0.209 Sum_probs=24.9
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCC-----ccEEEEEE
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDER-----TRVILIEC 50 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~-----TRav~vEf 50 (89)
++.++......++.|.+.+||.+. -|...+..
T Consensus 60 l~~~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~l 96 (141)
T 3bro_A 60 FSIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKL 96 (141)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEE
T ss_pred HCCCcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEE
Confidence 567888999999999999999763 35555554
No 21
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=46.16 E-value=20 Score=21.68 Aligned_cols=33 Identities=18% Similarity=0.149 Sum_probs=25.3
Q ss_pred EcCCCHHHHHHHHHhhhhCCcccCC-----ccEEEEEE
Q psy11140 18 DLGSSESNMAQGLSQMIIHKWLDER-----TRVILIEC 50 (89)
Q Consensus 18 ~L~~~~~~a~~~l~~L~~~~WiD~~-----TRav~vEf 50 (89)
.|+.++......|+.|.+.+||.+. .|...+.+
T Consensus 59 ~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~l 96 (146)
T 2gxg_A 59 RYFVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEI 96 (146)
T ss_dssp HTTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEE
T ss_pred HhCCCchhHHHHHHHHHHCCCEEeecCCCCCceEEEEE
Confidence 3577889999999999999999753 45555544
No 22
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=45.88 E-value=12 Score=22.72 Aligned_cols=24 Identities=13% Similarity=0.333 Sum_probs=20.7
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCC
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDER 42 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~ 42 (89)
++.++......|+.|.+.+||.+.
T Consensus 61 l~~s~~tvs~~l~~L~~~Glv~r~ 84 (146)
T 3tgn_A 61 LNVSQAAVTKAIKSLVKEGMLETS 84 (146)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred HCCCHHHHHHHHHHHHHCCCeEec
Confidence 567889999999999999999764
No 23
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=45.79 E-value=19 Score=23.54 Aligned_cols=30 Identities=23% Similarity=0.210 Sum_probs=24.6
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCCccEEEE
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDERTRVILI 48 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~TRav~v 48 (89)
||.+++..-..|++|++.++|+..-+.+.|
T Consensus 190 lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i 219 (232)
T 2gau_A 190 SNMTVSNAIRTLSTFVSERMLALDGKRIKI 219 (232)
T ss_dssp TTSCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred hCCCHHHHHHHHHHHHHCCCEeeCCCEEEE
Confidence 577888889999999999999876665543
No 24
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=45.46 E-value=23 Score=21.19 Aligned_cols=32 Identities=16% Similarity=0.450 Sum_probs=24.6
Q ss_pred cCCCHHHHHHHHHhhhhCCcccC-----CccEEEEEE
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDE-----RTRVILIEC 50 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~-----~TRav~vEf 50 (89)
++.++......++.|.+.+||.+ .-|...+..
T Consensus 58 l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~l 94 (138)
T 1jgs_A 58 LSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKL 94 (138)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEE
T ss_pred HCCChHHHHHHHHHHHHCCCEEecCCcccCceeEeEE
Confidence 56788899999999999999975 335555543
No 25
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=45.35 E-value=15 Score=22.35 Aligned_cols=23 Identities=0% Similarity=0.042 Sum_probs=20.5
Q ss_pred cCCCHHHHHHHHHhhhhCCcccC
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDE 41 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~ 41 (89)
++.++......++.|.+.+||.+
T Consensus 61 l~~~~~~vs~~l~~L~~~Glv~r 83 (143)
T 3oop_A 61 TKKDTPTVNRIVDVLLRKELIVR 83 (143)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HCCCHhhHHHHHHHHHHCCCeec
Confidence 56788899999999999999976
No 26
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=45.13 E-value=18 Score=21.68 Aligned_cols=24 Identities=8% Similarity=0.141 Sum_probs=20.9
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCC
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDER 42 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~ 42 (89)
++.++......++.|.+.+||.+.
T Consensus 55 l~is~~~vs~~l~~L~~~gli~~~ 78 (142)
T 3bdd_A 55 LQIDRAAVTRHLKLLEESGYIIRK 78 (142)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HCCCHHHHHHHHHHHHHCCCEEec
Confidence 567888999999999999999764
No 27
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=44.41 E-value=16 Score=20.69 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=22.4
Q ss_pred CCCCeEEEcC--CCHHHHHHHHHhhhhCC
Q psy11140 11 NGGGYVKDLG--SSESNMAQGLSQMIIHK 37 (89)
Q Consensus 11 ~ggGY~~~L~--~~~~~a~~~l~~L~~~~ 37 (89)
++++|.+.+| .++++|....+.|+..+
T Consensus 6 ~~~~~~vQvGaf~~~~~A~~~~~~L~~~g 34 (79)
T 1x60_A 6 SSGLYKVQIGAFKVKANADSLASNAEAKG 34 (79)
T ss_dssp CCCEEEEEEEEESCHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEEEcCCHHHHHHHHHHHHhCC
Confidence 4678988887 67899999999998874
No 28
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=44.35 E-value=17 Score=24.17 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=24.1
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCCccEEEE
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDERTRVILI 48 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~TRav~v 48 (89)
||.+++..-..|+.|++.++|+..-+-+.|
T Consensus 203 lG~sr~tvsR~l~~L~~~GlI~~~~~~i~I 232 (243)
T 3la7_A 203 IGSTRVTVTRLLGDLREKKMISIHKKKITV 232 (243)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred HCCcHHHHHHHHHHHHHCCCEEEcCCEEEE
Confidence 356678888999999999999887666554
No 29
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=44.19 E-value=19 Score=21.76 Aligned_cols=34 Identities=18% Similarity=0.103 Sum_probs=25.7
Q ss_pred EcCCCHHHHHHHHHhhhhCCcccCC-----ccEEEEEEe
Q psy11140 18 DLGSSESNMAQGLSQMIIHKWLDER-----TRVILIECS 51 (89)
Q Consensus 18 ~L~~~~~~a~~~l~~L~~~~WiD~~-----TRav~vEft 51 (89)
.++.++......++.|.+.+||.+. -|.+.+..|
T Consensus 56 ~l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT 94 (139)
T 3eco_A 56 ALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLT 94 (139)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEEC
T ss_pred HhCCCcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEEC
Confidence 3577889999999999999999764 355555543
No 30
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=43.53 E-value=25 Score=21.18 Aligned_cols=33 Identities=6% Similarity=0.144 Sum_probs=25.3
Q ss_pred EcCCCHHHHHHHHHhhhhCCcccCC-----ccEEEEEE
Q psy11140 18 DLGSSESNMAQGLSQMIIHKWLDER-----TRVILIEC 50 (89)
Q Consensus 18 ~L~~~~~~a~~~l~~L~~~~WiD~~-----TRav~vEf 50 (89)
.|+.++......++.|.+.+||.+. -|.+.+..
T Consensus 52 ~l~~s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~l 89 (144)
T 1lj9_A 52 LIKVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYA 89 (144)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEE
T ss_pred HHCCCHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEE
Confidence 3567888999999999999999763 35555544
No 31
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=43.06 E-value=18 Score=22.50 Aligned_cols=33 Identities=9% Similarity=0.169 Sum_probs=25.2
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCCc-----cEEEEEEe
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDERT-----RVILIECS 51 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~T-----Rav~vEft 51 (89)
++.++......++.|.+.+||.+.. |.+.+..|
T Consensus 74 l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT 111 (159)
T 3s2w_A 74 LKIDKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLT 111 (159)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEECC---CCEEEEEC
T ss_pred HCCCHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEEC
Confidence 5678889999999999999996532 55555543
No 32
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=42.94 E-value=14 Score=22.54 Aligned_cols=33 Identities=15% Similarity=0.376 Sum_probs=25.4
Q ss_pred EcCCCHHHHHHHHHhhhhCCcccCC-----ccEEEEEE
Q psy11140 18 DLGSSESNMAQGLSQMIIHKWLDER-----TRVILIEC 50 (89)
Q Consensus 18 ~L~~~~~~a~~~l~~L~~~~WiD~~-----TRav~vEf 50 (89)
.|+.++......|+.|.+.+||.+. -|++.+..
T Consensus 62 ~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~L 99 (127)
T 2frh_A 62 HLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILV 99 (127)
T ss_dssp HSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEEC
T ss_pred HHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEE
Confidence 4567788899999999999999773 45555544
No 33
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=42.69 E-value=23 Score=21.55 Aligned_cols=33 Identities=9% Similarity=0.247 Sum_probs=25.7
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCC-----ccEEEEEEe
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDER-----TRVILIECS 51 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~-----TRav~vEft 51 (89)
++.++......++.|.+.+||.+. -|.+.+..|
T Consensus 60 l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT 97 (144)
T 3f3x_A 60 YFVTQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEIT 97 (144)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEEC
T ss_pred HCCChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEEC
Confidence 567888999999999999999764 355655543
No 34
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=42.66 E-value=19 Score=23.72 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=24.0
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCCccEEEE
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDERTRVILI 48 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~TRav~v 48 (89)
||.+++..-..|+.|++.++|+..-+.+.|
T Consensus 196 lG~sr~tvsR~l~~l~~~glI~~~~~~i~I 225 (232)
T 1zyb_A 196 LDDTRLNISKTLNELQDNGLIELHRKEILI 225 (232)
T ss_dssp HTSCHHHHHHHHHHHHHTTSCEEETTEEEE
T ss_pred hCCChhHHHHHHHHHHHCCCEEecCCEEEE
Confidence 467788888999999999999876665543
No 35
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=42.62 E-value=30 Score=21.36 Aligned_cols=32 Identities=13% Similarity=0.153 Sum_probs=24.8
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCC-----ccEEEEEE
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDER-----TRVILIEC 50 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~-----TRav~vEf 50 (89)
|+.++......|+.|.+.+||.+. -|.+.+..
T Consensus 68 l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~l 104 (154)
T 2eth_A 68 LSTTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVL 104 (154)
T ss_dssp TTSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEE
T ss_pred HCCCHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEE
Confidence 567888999999999999999763 35555544
No 36
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=42.60 E-value=17 Score=22.41 Aligned_cols=32 Identities=13% Similarity=0.163 Sum_probs=23.7
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCCc-----cEEEEEE
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDERT-----RVILIEC 50 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~T-----Rav~vEf 50 (89)
++.++......|+.|.+.+||.+.. |.+.+..
T Consensus 71 l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~l 107 (153)
T 2pex_A 71 LYLDSATLTPLLKRLQAAGLVTRTRAASDERQVIIAL 107 (153)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEE
T ss_pred hCCCcccHHHHHHHHHHCCCEeecCCcccCCeeEeeE
Confidence 5678889999999999999997643 5555543
No 37
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=42.26 E-value=19 Score=23.83 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=23.2
Q ss_pred cCCCH-HHHHHHHHhhhhCCcccCCccEEEE
Q psy11140 19 LGSSE-SNMAQGLSQMIIHKWLDERTRVILI 48 (89)
Q Consensus 19 L~~~~-~~a~~~l~~L~~~~WiD~~TRav~v 48 (89)
||.++ +..-..|+.|++.+||+..-+.+.|
T Consensus 179 lG~sr~etvsR~l~~l~~~glI~~~~~~i~I 209 (238)
T 2bgc_A 179 SGIAHSSAVSRIISKLKQEKVIVYKNSCFYV 209 (238)
T ss_dssp TTCCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred hCCChHHHHHHHHHHHHHCCCEEecCCEEEE
Confidence 35566 5788899999999999876665544
No 38
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=41.57 E-value=23 Score=22.15 Aligned_cols=33 Identities=9% Similarity=0.016 Sum_probs=25.5
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCC-----ccEEEEEEe
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDER-----TRVILIECS 51 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~-----TRav~vEft 51 (89)
++.++......++.|.+.+||.+. -|.+.+..|
T Consensus 77 l~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT 114 (161)
T 3e6m_A 77 GVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLT 114 (161)
T ss_dssp TTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEEC
T ss_pred HCCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeEC
Confidence 577888999999999999999764 345555443
No 39
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=41.32 E-value=18 Score=21.01 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=24.2
Q ss_pred cCCCHHH-HHHHHHhhhhCCcccCCc----cEEEEEEe
Q psy11140 19 LGSSESN-MAQGLSQMIIHKWLDERT----RVILIECS 51 (89)
Q Consensus 19 L~~~~~~-a~~~l~~L~~~~WiD~~T----Rav~vEft 51 (89)
++.++.. ....++.|.+.+||. .. |...+..|
T Consensus 40 l~is~~t~vs~~l~~Le~~Glv~-~~~~drR~~~~~LT 76 (95)
T 2pg4_A 40 SGVSEKTFFMGLKDRLIRAGLVK-EETLSYRVKTLKLT 76 (95)
T ss_dssp HCCCHHHHHTTHHHHHHHTTSEE-EEEEETTEEEEEEC
T ss_pred HCCCchHHHHHHHHHHHHCCCee-cCCCCCCeEEEEEC
Confidence 4667788 889999999999997 22 66665543
No 40
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=41.20 E-value=19 Score=21.91 Aligned_cols=25 Identities=16% Similarity=0.029 Sum_probs=21.5
Q ss_pred EcCCCHHHHHHHHHhhhhCCcccCC
Q psy11140 18 DLGSSESNMAQGLSQMIIHKWLDER 42 (89)
Q Consensus 18 ~L~~~~~~a~~~l~~L~~~~WiD~~ 42 (89)
.++.++......++.|.+.+||.+.
T Consensus 59 ~l~i~~~~vs~~l~~Le~~glv~r~ 83 (147)
T 2hr3_A 59 AERMRSSNLAALLRELERGGLIVRH 83 (147)
T ss_dssp HTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HhCCChhhHHHHHHHHHHCCCEeeC
Confidence 3577889999999999999999764
No 41
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=40.72 E-value=22 Score=22.66 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=24.3
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCCc-----cEEEEEEe
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDERT-----RVILIECS 51 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~T-----Rav~vEft 51 (89)
++.++......|+.|.+.+||.+.. |.+.+..|
T Consensus 78 l~i~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT 115 (166)
T 3deu_A 78 IGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLT 115 (166)
T ss_dssp HTSCHHHHHHHHHHHHHTTSEEEC--------CEEEEC
T ss_pred HCCCHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEEC
Confidence 5778899999999999999997743 55555543
No 42
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=40.68 E-value=39 Score=19.46 Aligned_cols=39 Identities=15% Similarity=-0.001 Sum_probs=30.0
Q ss_pred CeEEEcCCCHHHHHHHHHhhhhCCcccCCccEEEEEEee
Q psy11140 14 GYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSL 52 (89)
Q Consensus 14 GY~~~L~~~~~~a~~~l~~L~~~~WiD~~TRav~vEftl 52 (89)
||.+--=.+.++|...++.|....+++..-|.+-|+++-
T Consensus 56 g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 94 (106)
T 2dgp_A 56 GCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPAD 94 (106)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECC
T ss_pred eEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECC
Confidence 665433357889999999999888888777888887753
No 43
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=40.65 E-value=31 Score=20.54 Aligned_cols=32 Identities=13% Similarity=0.113 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHHhhhhCCcccCCc-----cEEEEEEe
Q psy11140 20 GSSESNMAQGLSQMIIHKWLDERT-----RVILIECS 51 (89)
Q Consensus 20 ~~~~~~a~~~l~~L~~~~WiD~~T-----Rav~vEft 51 (89)
+-++......|+.|.+.++|.+.. |.+.+..|
T Consensus 39 ~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT 75 (107)
T 2hzt_A 39 NITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELS 75 (107)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEEC
Confidence 678888999999999999997643 45555443
No 44
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=39.90 E-value=15 Score=22.38 Aligned_cols=25 Identities=12% Similarity=0.307 Sum_probs=21.2
Q ss_pred EcCCCHHHHHHHHHhhhhCCcccCC
Q psy11140 18 DLGSSESNMAQGLSQMIIHKWLDER 42 (89)
Q Consensus 18 ~L~~~~~~a~~~l~~L~~~~WiD~~ 42 (89)
.++.++......++.|.+.+||.+.
T Consensus 63 ~l~~~~~tvs~~l~~Le~~Glv~r~ 87 (148)
T 3nrv_A 63 ILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred HHCCCHHHHHHHHHHHHHCCCEEee
Confidence 3577888999999999999999876
No 45
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=39.64 E-value=31 Score=21.21 Aligned_cols=31 Identities=3% Similarity=0.141 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHhhhhCCcccCCccEEEEEEe
Q psy11140 21 SSESNMAQGLSQMIIHKWLDERTRVILIECS 51 (89)
Q Consensus 21 ~~~~~a~~~l~~L~~~~WiD~~TRav~vEft 51 (89)
.+.++|...++.|......+...|.+.|+|+
T Consensus 144 ~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 144 TTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp SSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred CCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 5788999999999988888877888888874
No 46
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=39.27 E-value=36 Score=19.59 Aligned_cols=31 Identities=13% Similarity=0.110 Sum_probs=23.8
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCC--ccEEEEE
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDER--TRVILIE 49 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~--TRav~vE 49 (89)
++.++......|+.|.+.+||.+. .|...+.
T Consensus 36 l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~ 68 (99)
T 1tbx_A 36 FPMSTATFYDAKKFLIQEGFVKERQERGEKRLY 68 (99)
T ss_dssp SCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEE
T ss_pred cCCCHHHHHHHHHHHHHCCCEEEEecCCceEEE
Confidence 477889999999999999999762 2444443
No 47
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=39.24 E-value=28 Score=21.13 Aligned_cols=32 Identities=16% Similarity=0.086 Sum_probs=23.7
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCC-----ccEEEEEE
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDER-----TRVILIEC 50 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~-----TRav~vEf 50 (89)
|+.++......++.|.+.+||.+. -|.+.+.+
T Consensus 66 l~~~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~l 102 (150)
T 2rdp_A 66 MYLACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRL 102 (150)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEECCC---CEEEEE
T ss_pred HCCCchhHHHHHHHHHHCCCeeecCCCCCcceeEeEE
Confidence 567888999999999999999763 35555543
No 48
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=38.87 E-value=29 Score=20.71 Aligned_cols=32 Identities=13% Similarity=0.312 Sum_probs=24.8
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCC-----ccEEEEEE
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDER-----TRVILIEC 50 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~-----TRav~vEf 50 (89)
++.++......++.|.+.+||.+. -|...+..
T Consensus 53 l~~s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~l 89 (138)
T 3bpv_A 53 FHVDKGTIARTLRRLEESGFIEREQDPENRRRYILEV 89 (138)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEE
T ss_pred HCCCHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeE
Confidence 567888999999999999999763 35555543
No 49
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=38.58 E-value=19 Score=21.73 Aligned_cols=24 Identities=13% Similarity=0.153 Sum_probs=21.0
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCC
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDER 42 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~ 42 (89)
++.++......++.|.+.+||.+.
T Consensus 62 l~~s~~~vs~~l~~L~~~glv~r~ 85 (146)
T 2fbh_A 62 VGVEGPTLARLLDGLESQGLVRRL 85 (146)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hCCChhhHHHHHHHHHHCCCeeec
Confidence 577889999999999999999763
No 50
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=38.54 E-value=29 Score=20.88 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=21.0
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCC
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDER 42 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~ 42 (89)
++.++......++.|.+.+||.+.
T Consensus 57 l~~s~~tvs~~l~~L~~~glv~r~ 80 (145)
T 2a61_A 57 LGVAKSTVTGLVKRLEADGYLTRT 80 (145)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HCCCchhHHHHHHHHHHCCCeeec
Confidence 567888999999999999999764
No 51
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=37.83 E-value=21 Score=22.05 Aligned_cols=33 Identities=18% Similarity=0.386 Sum_probs=23.9
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCC-----ccEEEEEEe
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDER-----TRVILIECS 51 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~-----TRav~vEft 51 (89)
++.++......++.|.+.+||.+. -|.+.+..|
T Consensus 65 l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT 102 (149)
T 4hbl_A 65 LDLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLT 102 (149)
T ss_dssp HTCCHHHHHHHHHHHHHHTSEEC---------CEEEEC
T ss_pred HCCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeEC
Confidence 567888999999999999999875 356655543
No 52
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=37.51 E-value=33 Score=21.22 Aligned_cols=23 Identities=9% Similarity=0.134 Sum_probs=20.6
Q ss_pred cCCCHHHHHHHHHhhhhCCcccC
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDE 41 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~ 41 (89)
|+.++......|+.|.+.+||.+
T Consensus 76 l~is~~tvs~~l~~Le~~Gli~r 98 (162)
T 3cjn_A 76 AVVEQSTLSRALDGLQADGLVRR 98 (162)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HCCChhHHHHHHHHHHHCCCEEe
Confidence 57788999999999999999965
No 53
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=37.50 E-value=25 Score=21.26 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=24.9
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCC-----ccEEEEEE
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDER-----TRVILIEC 50 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~-----TRav~vEf 50 (89)
++.++......++.|.+.+||.+. -|...+..
T Consensus 64 l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~L 100 (147)
T 1z91_A 64 LYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISL 100 (147)
T ss_dssp TTCCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEE
T ss_pred HCCCcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEE
Confidence 577889999999999999999764 25555443
No 54
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=37.45 E-value=20 Score=21.71 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=24.4
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCC-----ccEEEEEE
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDER-----TRVILIEC 50 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~-----TRav~vEf 50 (89)
++.++......++.|.+.+||.+. -|.+.+..
T Consensus 61 l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~l 97 (142)
T 2bv6_A 61 LALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHL 97 (142)
T ss_dssp TTCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEE
T ss_pred HCCChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEE
Confidence 567778889999999999999763 45555543
No 55
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=37.27 E-value=25 Score=22.22 Aligned_cols=33 Identities=15% Similarity=0.272 Sum_probs=26.1
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCC-----ccEEEEEEe
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDER-----TRVILIECS 51 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~-----TRav~vEft 51 (89)
++.++......++.|.+.+||.+. -|++.|..|
T Consensus 56 l~~~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT 93 (151)
T 4aik_A 56 IGIEQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLT 93 (151)
T ss_dssp HTSCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEEC
T ss_pred HCcCHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcC
Confidence 577889999999999999999653 366666554
No 56
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=37.27 E-value=20 Score=21.90 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=21.0
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCC
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDER 42 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~ 42 (89)
++.++......++.|.+.+||.+.
T Consensus 64 l~~~~~~vs~~l~~Le~~Glv~r~ 87 (152)
T 3bj6_A 64 LQMKRQYISRILQEVQRAGLIERR 87 (152)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HCCCHHHHHHHHHHHHHCCCeeec
Confidence 577889999999999999999763
No 57
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=37.25 E-value=27 Score=20.99 Aligned_cols=33 Identities=12% Similarity=0.162 Sum_probs=25.1
Q ss_pred Ec-CCCHHHHHHHHHhhhhCCcccCCc-----cEEEEEE
Q psy11140 18 DL-GSSESNMAQGLSQMIIHKWLDERT-----RVILIEC 50 (89)
Q Consensus 18 ~L-~~~~~~a~~~l~~L~~~~WiD~~T-----Rav~vEf 50 (89)
.| +-++......|+.|.+.+||.+.. |.+.+..
T Consensus 44 ~l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~L 82 (112)
T 1z7u_A 44 ALDGITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTL 82 (112)
T ss_dssp HSTTCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEE
T ss_pred HhccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEE
Confidence 35 677888999999999999997653 4555544
No 58
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=37.02 E-value=35 Score=19.64 Aligned_cols=39 Identities=8% Similarity=0.018 Sum_probs=29.0
Q ss_pred CeEEEcCCCHHHHHHHHHhhhhCCcccCCccEEEEEEee
Q psy11140 14 GYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSL 52 (89)
Q Consensus 14 GY~~~L~~~~~~a~~~l~~L~~~~WiD~~TRav~vEftl 52 (89)
||.+--=.+.++|...++.|....+.+...|.+.|+++-
T Consensus 57 g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~ 95 (105)
T 2dnh_A 57 GCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFAD 95 (105)
T ss_dssp EEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESC
T ss_pred cEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECc
Confidence 564333357888999999999888887667888888754
No 59
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=36.81 E-value=35 Score=21.50 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=25.3
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCC-----ccEEEEEEe
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDER-----TRVILIECS 51 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~-----TRav~vEft 51 (89)
|+.++......++.|.+.+||.+. -|.+.+..|
T Consensus 69 l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT 106 (168)
T 2nyx_A 69 LGVQPSATGRMVDRLVGAELIDRLPHPTSRRELLAALT 106 (168)
T ss_dssp HTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEEC
T ss_pred hCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEEC
Confidence 567888999999999999999762 455555443
No 60
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=36.56 E-value=61 Score=19.01 Aligned_cols=36 Identities=19% Similarity=0.143 Sum_probs=25.1
Q ss_pred CeEEEcCCCHHHHHHHHHhhhhCC---cccCCccEEEEEEe
Q psy11140 14 GYVKDLGSSESNMAQGLSQMIIHK---WLDERTRVILIECS 51 (89)
Q Consensus 14 GY~~~L~~~~~~a~~~l~~L~~~~---WiD~~TRav~vEft 51 (89)
||-+--=.+.++|.+.|+.|.... .||. |.|.|+|+
T Consensus 54 G~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G--r~i~V~~A 92 (95)
T 2lkz_A 54 GFAFVQLSSAMDASQLLQILQSLHPPLKIDG--KTIGVDFA 92 (95)
T ss_dssp SEEEEECSSSHHHHHHHHHHHSSSSCEEETT--EEEEEEEC
T ss_pred eEeEEEECCHHHHHHHHHHhcCCCCCceECC--EEEEEEEc
Confidence 664333346788999999998765 4664 77888874
No 61
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=36.09 E-value=20 Score=22.47 Aligned_cols=33 Identities=15% Similarity=0.325 Sum_probs=25.0
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCC-----ccEEEEEEe
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDER-----TRVILIECS 51 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~-----TRav~vEft 51 (89)
++.++......++.|.+.+||.+. -|.+.+..|
T Consensus 70 l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT 107 (162)
T 3k0l_A 70 SFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVT 107 (162)
T ss_dssp HTSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEEC
T ss_pred HCCCHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEEC
Confidence 466778889999999999999753 355655543
No 62
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=35.75 E-value=26 Score=21.48 Aligned_cols=24 Identities=8% Similarity=0.095 Sum_probs=20.6
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCC
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDER 42 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~ 42 (89)
++.++......++.|.+.+||.+.
T Consensus 64 l~i~~~tvs~~l~~Le~~Glv~r~ 87 (150)
T 3fm5_A 64 MGLDPSQIVGLVDELEERGLVVRT 87 (150)
T ss_dssp HTCCHHHHHHHHHHHHTTTSEEC-
T ss_pred HCCCHhHHHHHHHHHHHCCCEEee
Confidence 567889999999999999999774
No 63
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=35.68 E-value=26 Score=20.89 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=23.9
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCC-----ccEEEEEE
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDER-----TRVILIEC 50 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~-----TRav~vEf 50 (89)
++.++......|+.|.+.+||.+. -|.+.+..
T Consensus 57 l~~~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~l 93 (139)
T 3bja_A 57 MGCVPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYL 93 (139)
T ss_dssp CSSCCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEE
T ss_pred HCCChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEE
Confidence 566778888999999999999652 35555543
No 64
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=35.37 E-value=61 Score=18.22 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=21.4
Q ss_pred EcCCCHHHHHHHHHhhhhCCcccCC
Q psy11140 18 DLGSSESNMAQGLSQMIIHKWLDER 42 (89)
Q Consensus 18 ~L~~~~~~a~~~l~~L~~~~WiD~~ 42 (89)
.++.++......|+.|.+.+||.+.
T Consensus 43 ~l~is~~tv~~~l~~L~~~glv~~~ 67 (109)
T 1sfx_A 43 ELDLSARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHCCCHHHHHHHHHHHHHCCCEEEE
Confidence 3567889999999999999999763
No 65
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=35.17 E-value=23 Score=23.25 Aligned_cols=23 Identities=13% Similarity=0.322 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHhhhhCCcccCC
Q psy11140 20 GSSESNMAQGLSQMIIHKWLDER 42 (89)
Q Consensus 20 ~~~~~~a~~~l~~L~~~~WiD~~ 42 (89)
+.+.+....+|.+|++.+|||..
T Consensus 45 g~~~e~Ie~vl~~l~~~g~ldD~ 67 (162)
T 3dfg_A 45 GIEPEAAQAAVERLAGEGWQDDV 67 (162)
T ss_dssp TCCHHHHHHHHHHHHHTTSCCHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCHH
Confidence 45678889999999999999863
No 66
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=35.14 E-value=32 Score=20.89 Aligned_cols=27 Identities=15% Similarity=0.211 Sum_probs=22.1
Q ss_pred EcCCCHHHHHHHHHhhhhCCcccCCcc
Q psy11140 18 DLGSSESNMAQGLSQMIIHKWLDERTR 44 (89)
Q Consensus 18 ~L~~~~~~a~~~l~~L~~~~WiD~~TR 44 (89)
.|+.++......|+.|.+.+||.+..+
T Consensus 40 ~l~is~~tv~~~l~~Le~~Gli~r~~~ 66 (139)
T 2x4h_A 40 DLKIAPSSVFEEVSHLEEKGLVKKKED 66 (139)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HhCCChHHHHHHHHHHHHCCCEEecCC
Confidence 356778889999999999999987543
No 67
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=34.95 E-value=23 Score=19.74 Aligned_cols=24 Identities=8% Similarity=0.073 Sum_probs=20.8
Q ss_pred EcCCCHHHHHHHHHhhhhCCcccC
Q psy11140 18 DLGSSESNMAQGLSQMIIHKWLDE 41 (89)
Q Consensus 18 ~L~~~~~~a~~~l~~L~~~~WiD~ 41 (89)
.|+-++......|+.|++.++|..
T Consensus 34 ~lglsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 34 KCQVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp HHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHCcCHHHHHHHHHHHHHCCcEec
Confidence 367788999999999999999865
No 68
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=34.64 E-value=30 Score=21.13 Aligned_cols=25 Identities=4% Similarity=0.025 Sum_probs=21.2
Q ss_pred EcCCCHHHHHHHHHhhhhCCcccCC
Q psy11140 18 DLGSSESNMAQGLSQMIIHKWLDER 42 (89)
Q Consensus 18 ~L~~~~~~a~~~l~~L~~~~WiD~~ 42 (89)
.|+.++......|+.|.+.+||.+.
T Consensus 60 ~l~~s~~tvs~~l~~Le~~glv~r~ 84 (155)
T 1s3j_A 60 RMEVKPSAVTLMADRLEQKNLIART 84 (155)
T ss_dssp HHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHCCCHHHHHHHHHHHHHCCCEeec
Confidence 3567889999999999999999653
No 69
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=34.06 E-value=24 Score=23.53 Aligned_cols=22 Identities=9% Similarity=0.235 Sum_probs=19.2
Q ss_pred CCCHHHHHHHHHhhhhCCcccC
Q psy11140 20 GSSESNMAQGLSQMIIHKWLDE 41 (89)
Q Consensus 20 ~~~~~~a~~~l~~L~~~~WiD~ 41 (89)
+.+.+....+|..|++.+|||.
T Consensus 46 g~~~~~ie~vl~~L~~~g~ldD 67 (177)
T 3e3v_A 46 DIHEDYISEIINKLIDLDLIND 67 (177)
T ss_dssp TCCHHHHHHHHHHHHHTTSSCH
T ss_pred CCCHHHHHHHHHHHHHcCCCCH
Confidence 4567888999999999999986
No 70
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=33.74 E-value=31 Score=21.56 Aligned_cols=33 Identities=12% Similarity=0.193 Sum_probs=24.9
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCC-----ccEEEEEEe
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDER-----TRVILIECS 51 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~-----TRav~vEft 51 (89)
|+.++......++.|.+.+||.+. -|.+.|..|
T Consensus 61 l~~~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT 98 (147)
T 4b8x_A 61 LMVHPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATIT 98 (147)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEECC----CEEEEEC
T ss_pred HCCCHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEEC
Confidence 577889999999999999999753 356666544
No 71
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=33.33 E-value=25 Score=22.96 Aligned_cols=22 Identities=14% Similarity=0.283 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHhhhhCCcccCC
Q psy11140 21 SSESNMAQGLSQMIIHKWLDER 42 (89)
Q Consensus 21 ~~~~~a~~~l~~L~~~~WiD~~ 42 (89)
.+.+....+|..|++.+|||..
T Consensus 44 ~~~~~i~~vl~~l~~~g~ldD~ 65 (159)
T 3c1d_A 44 ATAEDYERVIAWCHEHGYLDDS 65 (159)
T ss_dssp CCHHHHHHHHHHHHHTTSCCHH
T ss_pred CCHHHHHHHHHHHHHcCCcCHH
Confidence 4678889999999999999863
No 72
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=33.29 E-value=23 Score=22.98 Aligned_cols=27 Identities=22% Similarity=0.428 Sum_probs=22.7
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCCccE
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDERTRV 45 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~TRa 45 (89)
||.+++..-..|+.|++.+||+..-+.
T Consensus 173 lG~sr~tvsR~l~~L~~~g~I~~~~~~ 199 (222)
T 1ft9_A 173 IGSSRQTTSTALNSLIKEGYISRQGRG 199 (222)
T ss_dssp HCSCHHHHHHHHHHHHHTTSSEECSTT
T ss_pred hCCcHHHHHHHHHHHHHCCcEEEcCCc
Confidence 466778888999999999999886665
No 73
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=33.23 E-value=21 Score=21.74 Aligned_cols=23 Identities=0% Similarity=-0.069 Sum_probs=20.4
Q ss_pred cCCCHHHHHHHHHhhhhCCcccC
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDE 41 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~ 41 (89)
++.++......++.|.+.+||.+
T Consensus 55 l~~~~~tvs~~l~~Le~~Glv~r 77 (145)
T 3g3z_A 55 WSLPKQTVSGVCKTLAGQGLIEW 77 (145)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HCCCHHHHHHHHHHHHHCCCEee
Confidence 56788899999999999999975
No 74
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=32.59 E-value=31 Score=20.64 Aligned_cols=32 Identities=13% Similarity=0.155 Sum_probs=25.2
Q ss_pred EcCCCHHHHHHHHHhhhhCCcccCC-----ccEEEEE
Q psy11140 18 DLGSSESNMAQGLSQMIIHKWLDER-----TRVILIE 49 (89)
Q Consensus 18 ~L~~~~~~a~~~l~~L~~~~WiD~~-----TRav~vE 49 (89)
.++.++......++.|.+.+||.+. .|...+.
T Consensus 50 ~l~~~~stvs~~l~~L~~~G~v~r~~~~~d~r~~~~~ 86 (152)
T 1ku9_A 50 ELKISKGNVSMSLKKLEELGFVRKVWIKGERKNYYEA 86 (152)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEECCTTCSSCEEEE
T ss_pred HHCcCHHHHHHHHHHHHHCCCEEEEecCCCceEEEee
Confidence 3577889999999999999999763 4555554
No 75
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=32.06 E-value=58 Score=18.96 Aligned_cols=31 Identities=19% Similarity=0.172 Sum_probs=23.7
Q ss_pred EcCCCHHHHHHHHHhhhhCCcccCC--ccEEEE
Q psy11140 18 DLGSSESNMAQGLSQMIIHKWLDER--TRVILI 48 (89)
Q Consensus 18 ~L~~~~~~a~~~l~~L~~~~WiD~~--TRav~v 48 (89)
.|+.++......|+.|.+.+||.+. .|.+..
T Consensus 43 ~l~is~~tv~~~l~~L~~~gli~~~~~gr~~~y 75 (114)
T 2oqg_A 43 RLPVSRQAIAKHLNALQACGLVESVKVGREIRY 75 (114)
T ss_dssp HSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred HHCcCHHHHHHHHHHHHHCCCeeEEecCCEEEE
Confidence 3577888999999999999999752 344443
No 76
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=31.74 E-value=42 Score=23.30 Aligned_cols=27 Identities=11% Similarity=-0.034 Sum_probs=21.9
Q ss_pred CCCCeEEEcCCCHHHHHHHHHhhhhCC
Q psy11140 11 NGGGYVKDLGSSESNMAQGLSQMIIHK 37 (89)
Q Consensus 11 ~ggGY~~~L~~~~~~a~~~l~~L~~~~ 37 (89)
|+||.++-|..+.+.+..+.+.+++++
T Consensus 294 G~Ggc~ial~~~~~~~~~i~~~~~~~G 320 (335)
T 3gon_A 294 GGGDCGIALSFDAQSTKTLKNRWADLG 320 (335)
T ss_dssp CSSSEEEEEECSHHHHHHHHHHHHHTT
T ss_pred cchheEEEEECCHHHHHHHHHHHHHCC
Confidence 356789999988888888888888776
No 77
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=31.18 E-value=48 Score=21.50 Aligned_cols=33 Identities=18% Similarity=0.399 Sum_probs=25.4
Q ss_pred cCCCHHHHHHHHHhhhhCCcccC-----CccEEEEEEe
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDE-----RTRVILIECS 51 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~-----~TRav~vEft 51 (89)
++.++......|+.|.+.+||.+ --|.+.+..|
T Consensus 67 l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT 104 (189)
T 3nqo_A 67 MGTSKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVT 104 (189)
T ss_dssp HTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEEC
T ss_pred HCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEEC
Confidence 56788889999999999999976 3355665543
No 78
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=31.11 E-value=28 Score=23.98 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=18.9
Q ss_pred CCCHHHHHHHHHhhhhCCcccC
Q psy11140 20 GSSESNMAQGLSQMIIHKWLDE 41 (89)
Q Consensus 20 ~~~~~~a~~~l~~L~~~~WiD~ 41 (89)
+.+.+....+|..|++.+|||.
T Consensus 89 g~~~e~i~~vl~~L~~~g~ldD 110 (221)
T 3d5l_A 89 DTPEEFVEPILKKLRGQQLIDD 110 (221)
T ss_dssp TCCHHHHHHHHHHHHHTTCCCH
T ss_pred CCCHHHHHHHHHHHHHcCCCCH
Confidence 3467888899999999999986
No 79
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=31.05 E-value=34 Score=20.89 Aligned_cols=23 Identities=17% Similarity=0.091 Sum_probs=20.5
Q ss_pred cCCCHHHHHHHHHhhhhCCcccC
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDE 41 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~ 41 (89)
++.++......++.|.+.+||.+
T Consensus 65 l~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 65 LIITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HCCCHHHHHHHHHHHHHCCCEEe
Confidence 46778889999999999999987
No 80
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=30.72 E-value=25 Score=21.71 Aligned_cols=25 Identities=0% Similarity=0.219 Sum_probs=21.0
Q ss_pred EcCCCHHHHHHHHHhhhhCCcccCC
Q psy11140 18 DLGSSESNMAQGLSQMIIHKWLDER 42 (89)
Q Consensus 18 ~L~~~~~~a~~~l~~L~~~~WiD~~ 42 (89)
.|+.++......|+.|.+.+||.+.
T Consensus 72 ~l~is~~tvs~~l~~Le~~glv~r~ 96 (162)
T 2fa5_A 72 RTAMDKVAVSRAVARLLERGFIRRE 96 (162)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred HHCCCHHHHHHHHHHHHHCCCEeee
Confidence 3567888999999999999999874
No 81
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=30.14 E-value=31 Score=21.65 Aligned_cols=33 Identities=12% Similarity=0.127 Sum_probs=23.4
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCC-----ccEEEEEEe
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDER-----TRVILIECS 51 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~-----TRav~vEft 51 (89)
|+.++......++.|.+.+||.+. -|.+.+..|
T Consensus 72 l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT 109 (168)
T 3u2r_A 72 LISRAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALT 109 (168)
T ss_dssp C---CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEEC
T ss_pred HCCChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEEC
Confidence 466778889999999999999864 356666544
No 82
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=29.95 E-value=24 Score=20.19 Aligned_cols=27 Identities=7% Similarity=0.131 Sum_probs=20.4
Q ss_pred CCCCeEEEcC--CCHHHHHHHHHhhhhCC
Q psy11140 11 NGGGYVKDLG--SSESNMAQGLSQMIIHK 37 (89)
Q Consensus 11 ~ggGY~~~L~--~~~~~a~~~l~~L~~~~ 37 (89)
++|+|.+.+| .++++|....+.|+..+
T Consensus 6 ~~~~~~vQvGaF~~~~~A~~l~~~L~~~G 34 (81)
T 1uta_A 6 DERRWMVQCGSFRGAEQAETVRAQLAFEG 34 (81)
T ss_dssp CCCBCCCBCCEESCHHHHHHHHHHHHHHT
T ss_pred CCccEEEEEEEcCCHHHHHHHHHHHHhCC
Confidence 3567887776 56788888888888754
No 83
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=29.74 E-value=33 Score=19.47 Aligned_cols=25 Identities=12% Similarity=0.112 Sum_probs=21.5
Q ss_pred EcCCCHHHHHHHHHhhhhCCcccCC
Q psy11140 18 DLGSSESNMAQGLSQMIIHKWLDER 42 (89)
Q Consensus 18 ~L~~~~~~a~~~l~~L~~~~WiD~~ 42 (89)
.++-++......|+.|.+.+||.+.
T Consensus 45 ~l~is~~tv~~~l~~L~~~g~v~~~ 69 (109)
T 2d1h_A 45 IFKLSKTTVENSLKKLIELGLVVRT 69 (109)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHCcCHHHHHHHHHHHHHCCCeEee
Confidence 4577889999999999999999763
No 84
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=28.76 E-value=44 Score=20.82 Aligned_cols=26 Identities=4% Similarity=0.098 Sum_probs=22.3
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCCcc
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDERTR 44 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~TR 44 (89)
++.+..+....|+.|.+.++|.+..+
T Consensus 61 l~~s~~~V~~~l~~Le~kGlI~~~~~ 86 (128)
T 2vn2_A 61 MTVSAAECMEMVRRLLQKGMIAIEEH 86 (128)
T ss_dssp SSSCHHHHHHHHHHHHHTTSSEECC-
T ss_pred HCcCHHHHHHHHHHHHHCCCEEEEeE
Confidence 56788999999999999999988665
No 85
>1c4q_A Protein (shiga-like toxin I subunit B); receptor binding, protein-carbohydrate recognition, OB-fold; HET: GLA GAL BGC; 1.52A {Escherichia coli} SCOP: b.40.2.1 PDB: 1d1i_A* 1czw_A* 1d1k_A* 2xsc_A 1bos_A 1dm0_B 1qnu_A* 1r4q_B 2c5c_A* 1bov_A 4ull_A 1c48_A 1cqf_A* 1czg_A
Probab=28.71 E-value=42 Score=19.54 Aligned_cols=15 Identities=20% Similarity=0.443 Sum_probs=10.9
Q ss_pred EEEEeeeeCCCCeEEE
Q psy11140 47 LIECSLYNPNINAIIA 62 (89)
Q Consensus 47 ~vEftlYN~n~nLF~~ 62 (89)
-|||+-||.+ |.|++
T Consensus 8 kiefskyne~-~tftv 22 (69)
T 1c4q_A 8 KVEYTKYNDD-DTFTV 22 (69)
T ss_dssp EEEEEEECTT-SCEEE
T ss_pred eEEEEEecCC-ceEEE
Confidence 3899999987 44553
No 86
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=28.65 E-value=63 Score=19.06 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=20.1
Q ss_pred CCCHHHHHHHHHhhhhCCcccCC
Q psy11140 20 GSSESNMAQGLSQMIIHKWLDER 42 (89)
Q Consensus 20 ~~~~~~a~~~l~~L~~~~WiD~~ 42 (89)
+-++......|+.|.+.+||.+.
T Consensus 50 gis~~~ls~~L~~Le~~GlV~r~ 72 (107)
T 2fsw_A 50 GISEKMLIDELKFLCGKGLIKKK 72 (107)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHHHHHHHCCCEEEe
Confidence 37888899999999999999764
No 87
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=28.48 E-value=40 Score=20.64 Aligned_cols=24 Identities=17% Similarity=0.032 Sum_probs=21.0
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCC
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDER 42 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~ 42 (89)
++.++......++.|.+.+||.+.
T Consensus 67 l~i~~~tvs~~l~~Le~~Glv~r~ 90 (155)
T 3cdh_A 67 SLMEQSRMTRIVDQMDARGLVTRV 90 (155)
T ss_dssp TTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HCCCHHHHHHHHHHHHHCCCEEec
Confidence 577889999999999999999764
No 88
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=28.40 E-value=22 Score=21.61 Aligned_cols=24 Identities=0% Similarity=0.097 Sum_probs=17.7
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCC
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDER 42 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~ 42 (89)
++.++......++.|.+.+||.+.
T Consensus 61 l~~~~~tvs~~l~~L~~~Glv~r~ 84 (142)
T 3ech_A 61 MCRDKALITRKIRELEGRNLVRRE 84 (142)
T ss_dssp HC---CHHHHHHHHHHHTTSEEC-
T ss_pred hCCCHHHHHHHHHHHHHCCCEeec
Confidence 456777888999999999999774
No 89
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=28.15 E-value=34 Score=21.33 Aligned_cols=26 Identities=12% Similarity=0.147 Sum_probs=22.2
Q ss_pred EcCCCHHHHHHHHHhhhhCCcccCCc
Q psy11140 18 DLGSSESNMAQGLSQMIIHKWLDERT 43 (89)
Q Consensus 18 ~L~~~~~~a~~~l~~L~~~~WiD~~T 43 (89)
.|+.++......|+.|++.++|.+.+
T Consensus 28 ~lg~s~~tv~~~l~~L~~~G~i~~~~ 53 (144)
T 2cfx_A 28 KIKLSPPSVTERVRQLESFGIIKQYT 53 (144)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHCcCHHHHHHHHHHHHHCCCeEEEe
Confidence 35778899999999999999998743
No 90
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=27.38 E-value=47 Score=20.61 Aligned_cols=25 Identities=0% Similarity=0.094 Sum_probs=21.8
Q ss_pred EcCCCHHHHHHHHHhhhhCCcccCC
Q psy11140 18 DLGSSESNMAQGLSQMIIHKWLDER 42 (89)
Q Consensus 18 ~L~~~~~~a~~~l~~L~~~~WiD~~ 42 (89)
.||-++......|+.|++.++|.+.
T Consensus 26 ~lg~s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 26 EIRIPKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHTSCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHCcCHHHHHHHHHHHHHCCcEEEE
Confidence 3577889999999999999999874
No 91
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=25.34 E-value=15 Score=23.93 Aligned_cols=30 Identities=10% Similarity=0.271 Sum_probs=0.0
Q ss_pred EcCCCHHHHHHHHHhhhhCCcccCCccEEE
Q psy11140 18 DLGSSESNMAQGLSQMIIHKWLDERTRVIL 47 (89)
Q Consensus 18 ~L~~~~~~a~~~l~~L~~~~WiD~~TRav~ 47 (89)
.||.+++..-..|+.|++.++|+..-+.+.
T Consensus 173 ~lg~sr~tvsR~l~~L~~~G~I~~~~~~i~ 202 (213)
T 1o5l_A 173 LFGCARPALSRVFQELEREGYIEKHGRRIK 202 (213)
T ss_dssp ------------------------------
T ss_pred HhCCCHHHHHHHHHHHHHCCeEEEcCCEEE
Confidence 467778888899999999999987655443
No 92
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=24.84 E-value=42 Score=20.97 Aligned_cols=24 Identities=13% Similarity=0.086 Sum_probs=20.8
Q ss_pred EcCCCHHHHHHHHHhhhhCCcccC
Q psy11140 18 DLGSSESNMAQGLSQMIIHKWLDE 41 (89)
Q Consensus 18 ~L~~~~~~a~~~l~~L~~~~WiD~ 41 (89)
.++-++......|+.|.+.++|.+
T Consensus 30 ~lg~s~~tv~~~l~~L~~~G~i~~ 53 (150)
T 2w25_A 30 RAGLSVSAVQSRVRRLESRGVVQG 53 (150)
T ss_dssp HHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHCcCHHHHHHHHHHHHHCCCEEE
Confidence 357788999999999999999965
No 93
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=24.80 E-value=47 Score=18.74 Aligned_cols=24 Identities=29% Similarity=0.228 Sum_probs=20.8
Q ss_pred EcCCCHHHHHHHHHhhhhCCcccC
Q psy11140 18 DLGSSESNMAQGLSQMIIHKWLDE 41 (89)
Q Consensus 18 ~L~~~~~~a~~~l~~L~~~~WiD~ 41 (89)
.|+.++......|+.|.+.+||.+
T Consensus 47 ~l~is~~tvs~~l~~L~~~glv~~ 70 (99)
T 3cuo_A 47 ITGLSASATSQHLARMRDEGLIDS 70 (99)
T ss_dssp HHCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHCcCHHHHHHHHHHHHHCCCEEE
Confidence 357788899999999999999965
No 94
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=24.17 E-value=50 Score=19.93 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=21.7
Q ss_pred EcCCCHHHHHHHHHhhhhCCcccCC
Q psy11140 18 DLGSSESNMAQGLSQMIIHKWLDER 42 (89)
Q Consensus 18 ~L~~~~~~a~~~l~~L~~~~WiD~~ 42 (89)
.|+-++...+..|+.|.+.++|...
T Consensus 52 ~lgVSr~tVr~al~~L~~~GlI~~~ 76 (102)
T 2b0l_A 52 RVGITRSVIVNALRKLESAGVIESR 76 (102)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 4678889999999999999999754
No 95
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=23.51 E-value=51 Score=19.36 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=21.1
Q ss_pred EcCCCHHHHHHHHHhhhhCCcccC
Q psy11140 18 DLGSSESNMAQGLSQMIIHKWLDE 41 (89)
Q Consensus 18 ~L~~~~~~a~~~l~~L~~~~WiD~ 41 (89)
.|+.++......|..|++.++|.+
T Consensus 36 ~Lgvsr~tV~~~L~~Le~~G~I~~ 59 (81)
T 1qbj_A 36 KLGTPKKEINRVLYSLAKKGKLQK 59 (81)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHCcCHHHHHHHHHHHHHCCCEEe
Confidence 467788899999999999999975
No 96
>4aw7_A GH86A beta-porphyranase; hydrolase, porphyran-hexa-oligosaccharide, complex; HET: GLA GAL L6S AAL; 1.33A {Bacteroides plebeius}
Probab=23.08 E-value=1.4e+02 Score=24.13 Aligned_cols=45 Identities=9% Similarity=-0.054 Sum_probs=32.1
Q ss_pred ccEEEEEEeeeeCCCC-eE-EEEEEEEEEcCccceeeeeEEEEeecc
Q psy11140 43 TRVILIECSLYNPNIN-AI-IAVSLMIERLGSHNYLTDSEVGIRGKS 87 (89)
Q Consensus 43 TRav~vEftlYN~n~n-LF-~~vtll~E~~~tG~~~~s~~v~~~~~~ 87 (89)
.|.-|.-.--.-.+.+ |- .-=++.+.||.+||-+.|+.+|+++-+
T Consensus 543 ~r~~fFg~ieipVp~~lL~~~~NtI~VtFPD~GG~VsSv~L~v~~~~ 589 (591)
T 4aw7_A 543 NRNIFFGMIEVPFDIQLLKNGDNNVDITFSDGGGHVSSMILQVEKYT 589 (591)
T ss_dssp TSSEEEEEEEEEECGGGCCSEEEEEEEECSSCCSEEEEEEEEEEEEE
T ss_pred ChhhceEEEEecCCHHHHhcCCCeEEEEecCCCCeEEEEEEEEEEEe
Confidence 4655544443444444 44 488899999999999999999988643
No 97
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=22.86 E-value=50 Score=24.34 Aligned_cols=34 Identities=12% Similarity=0.167 Sum_probs=27.0
Q ss_pred EcCCCHHHHHHHHHhhhhCCcccCC-----ccEEEEEEe
Q psy11140 18 DLGSSESNMAQGLSQMIIHKWLDER-----TRVILIECS 51 (89)
Q Consensus 18 ~L~~~~~~a~~~l~~L~~~~WiD~~-----TRav~vEft 51 (89)
.|+.++......|+.|.+.+||.|. -|.+.|..|
T Consensus 429 ~~~~~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT 467 (487)
T 1hsj_A 429 CSEFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVT 467 (487)
T ss_dssp SSCCCHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECC
T ss_pred HHCCCHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEEC
Confidence 3567788999999999999999774 377777654
No 98
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=22.84 E-value=40 Score=21.02 Aligned_cols=24 Identities=8% Similarity=0.171 Sum_probs=21.2
Q ss_pred EcCCCHHHHHHHHHhhhhCCcccC
Q psy11140 18 DLGSSESNMAQGLSQMIIHKWLDE 41 (89)
Q Consensus 18 ~L~~~~~~a~~~l~~L~~~~WiD~ 41 (89)
.||-++......++.|++.++|.+
T Consensus 32 ~lg~s~~tv~~~l~~L~~~G~i~~ 55 (151)
T 2dbb_A 32 ILNTTRQRIARRIDKLKKLGIIRK 55 (151)
T ss_dssp HTTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHCcCHHHHHHHHHHHHHCCCEEE
Confidence 367788999999999999999976
No 99
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=22.58 E-value=77 Score=22.76 Aligned_cols=28 Identities=11% Similarity=-0.092 Sum_probs=22.4
Q ss_pred CCCeEEEcCCCHHHHHHHHHhhhhCCcc
Q psy11140 12 GGGYVKDLGSSESNMAQGLSQMIIHKWL 39 (89)
Q Consensus 12 ggGY~~~L~~~~~~a~~~l~~L~~~~Wi 39 (89)
+||.++-|-.+.+.+.+..+.|++.++-
T Consensus 297 gGg~vial~~~~~~~~~~~~~l~~~g~~ 324 (337)
T 2pg9_A 297 GGDCGIALSFDAQSTKTLKNRWADLGIE 324 (337)
T ss_dssp SSSEEEEEECSHHHHHHHHHHHHHTTCE
T ss_pred CccEEEEEECCHHHHHHHHHHHHHCCCE
Confidence 4488888887777888888999988763
No 100
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=22.38 E-value=68 Score=20.00 Aligned_cols=32 Identities=22% Similarity=0.275 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHHhhhhCCcccCCc-----cEEEEEEe
Q psy11140 20 GSSESNMAQGLSQMIIHKWLDERT-----RVILIECS 51 (89)
Q Consensus 20 ~~~~~~a~~~l~~L~~~~WiD~~T-----Rav~vEft 51 (89)
+-++......|+.|.+.+||.+.. |.+.+..|
T Consensus 60 gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT 96 (131)
T 1yyv_A 60 GVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLT 96 (131)
T ss_dssp TCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEEC
Confidence 477888899999999999998643 55555543
No 101
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=22.28 E-value=91 Score=18.85 Aligned_cols=37 Identities=5% Similarity=-0.008 Sum_probs=26.1
Q ss_pred CeEEEcCCCHHHHHHHHHhhhhCCcccCCccEEEEEEe
Q psy11140 14 GYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECS 51 (89)
Q Consensus 14 GY~~~L~~~~~~a~~~l~~L~~~~WiD~~TRav~vEft 51 (89)
||..--=.+.++|...++.|... +++...|.+-|+|+
T Consensus 132 g~afV~f~~~~~A~~A~~~l~g~-~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 132 GVAFVRYNKREEAQEAISALNNV-IPEGGSQPLSVRLA 168 (168)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTC-CCTTCSSCCEEEEC
T ss_pred eEEEEEECCHHHHHHHHHHhcCC-EecCCCeEEEEEeC
Confidence 55432225688898999888665 77777788888764
No 102
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=21.96 E-value=38 Score=23.74 Aligned_cols=26 Identities=15% Similarity=0.302 Sum_probs=21.6
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCCcc
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDERTR 44 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~TR 44 (89)
|+.++......|+.|++.+||.+..|
T Consensus 176 lglsksTv~r~L~~Le~~GlV~r~~r 201 (244)
T 2wte_A 176 LDKSEKTLINKIAELKKFGILTQKGK 201 (244)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HCcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 56778889999999999999987533
No 103
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=21.26 E-value=33 Score=20.99 Aligned_cols=24 Identities=4% Similarity=0.223 Sum_probs=20.1
Q ss_pred cCCCHHHHHHHHHhhhhCCcccCC
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLDER 42 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD~~ 42 (89)
++.++......++.|.+.+||.+.
T Consensus 61 l~~~~~~vs~~l~~Le~~Glv~r~ 84 (151)
T 3kp7_A 61 QGVNKAAVSRRVKKLLNAELVKLE 84 (151)
T ss_dssp HCSCSSHHHHHHHHHHHTTSEEC-
T ss_pred HCCCHHHHHHHHHHHHHCCCEEee
Confidence 466778889999999999999873
No 104
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=21.16 E-value=48 Score=23.20 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=27.1
Q ss_pred EcCCCHHHHHHHHHhhhhCCcccCC-----ccEEEEEEe
Q psy11140 18 DLGSSESNMAQGLSQMIIHKWLDER-----TRVILIECS 51 (89)
Q Consensus 18 ~L~~~~~~a~~~l~~L~~~~WiD~~-----TRav~vEft 51 (89)
.++.++......++.|.+.+||.+. -|++.|..|
T Consensus 183 ~l~i~~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT 221 (250)
T 1p4x_A 183 TIHHKYPQTVRALNNLKKQGYLIKERSTEDERKILIHMD 221 (250)
T ss_dssp HSSSCHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECC
T ss_pred HHCCChhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEEC
Confidence 3567788999999999999999774 377777654
No 105
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=20.93 E-value=73 Score=22.11 Aligned_cols=31 Identities=13% Similarity=0.142 Sum_probs=23.5
Q ss_pred EcCCCHHHHHHHHHhhhhCCcccCCccEEEE
Q psy11140 18 DLGSSESNMAQGLSQMIIHKWLDERTRVILI 48 (89)
Q Consensus 18 ~L~~~~~~a~~~l~~L~~~~WiD~~TRav~v 48 (89)
.|+-++......++.|++.++|+...+.+.+
T Consensus 39 ~LgvS~~SV~~~lkkL~e~GLV~~~~~Gv~L 69 (200)
T 2p8t_A 39 RLELGEGSVRTLLRKLSHLDIIRSKQRGHFL 69 (200)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEC--CEEE
T ss_pred HhCCCHHHHHHHHHHHHHCCCEEEeCCCeEE
Confidence 3567788899999999999999887665543
No 106
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=20.90 E-value=72 Score=20.76 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=22.1
Q ss_pred EcCCCHHHHHHHHHhhhhCCcccCCc
Q psy11140 18 DLGSSESNMAQGLSQMIIHKWLDERT 43 (89)
Q Consensus 18 ~L~~~~~~a~~~l~~L~~~~WiD~~T 43 (89)
.||-+.......|+.|++.++|.+.+
T Consensus 50 ~lglS~~tv~~rl~~L~~~G~I~~~~ 75 (171)
T 2e1c_A 50 ITGLAESTIHERIRKLRESGVIKKFT 75 (171)
T ss_dssp HHTSCHHHHHHHHHHHHHTTSSCCCC
T ss_pred HHCcCHHHHHHHHHHHHHCCCeEeee
Confidence 35778899999999999999998753
No 107
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=20.86 E-value=49 Score=19.46 Aligned_cols=25 Identities=12% Similarity=0.201 Sum_probs=21.9
Q ss_pred EcCCCHHHHHHHHHhhhhCCcccCC
Q psy11140 18 DLGSSESNMAQGLSQMIIHKWLDER 42 (89)
Q Consensus 18 ~L~~~~~~a~~~l~~L~~~~WiD~~ 42 (89)
.|+-++......|+.|.+.+||...
T Consensus 42 ~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 42 QLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp TTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred HHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 4678899999999999999999654
No 108
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=20.80 E-value=39 Score=19.03 Aligned_cols=22 Identities=9% Similarity=-0.034 Sum_probs=19.9
Q ss_pred cCCCHHHHHHHHHhhhhCCccc
Q psy11140 19 LGSSESNMAQGLSQMIIHKWLD 40 (89)
Q Consensus 19 L~~~~~~a~~~l~~L~~~~WiD 40 (89)
|+-++......|+.|.+.++|.
T Consensus 24 lgvs~~tv~r~L~~L~~~GlI~ 45 (81)
T 2htj_A 24 LAVTDYQARYYLLLLEKAGMVQ 45 (81)
T ss_dssp HTSCHHHHHHHHHHHHHHTSEE
T ss_pred HCcCHHHHHHHHHHHHHCCCEE
Confidence 5678889999999999999997
No 109
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=20.43 E-value=87 Score=22.87 Aligned_cols=27 Identities=7% Similarity=-0.001 Sum_probs=21.9
Q ss_pred CCCeEEEcCCCHHHHHHHHHhhhhCCc
Q psy11140 12 GGGYVKDLGSSESNMAQGLSQMIIHKW 38 (89)
Q Consensus 12 ggGY~~~L~~~~~~a~~~l~~L~~~~W 38 (89)
+||.++-|-.+.+.+.+..+.|++.++
T Consensus 318 gGg~vial~~~~~~~~~l~~~l~~~g~ 344 (365)
T 3k17_A 318 GGDCGIAFSKTKELAEKLVNEWEKLGI 344 (365)
T ss_dssp SSSEEEEEESSHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCC
Confidence 458999898887788888888888765
No 110
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=20.26 E-value=46 Score=19.14 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=20.8
Q ss_pred EcCCCHHHHHHHHHhhhhCCcccC
Q psy11140 18 DLGSSESNMAQGLSQMIIHKWLDE 41 (89)
Q Consensus 18 ~L~~~~~~a~~~l~~L~~~~WiD~ 41 (89)
.|+.++......|..|++.++|.+
T Consensus 40 ~Lgvs~~tV~~~L~~L~~~G~I~~ 63 (77)
T 1qgp_A 40 KLGTPKKEINRVLYSLAKKGKLQK 63 (77)
T ss_dssp HHCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHCcCHHHHHHHHHHHHHCCCEEe
Confidence 467788899999999999999965
Done!