RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy11140
         (89 letters)



>gnl|CDD|219699 pfam08016, PKD_channel, Polycystin cation channel.  This family
           contains the cation channel region of PKD1 and PKD2
           proteins.
          Length = 423

 Score = 65.1 bits (159), Expect = 5e-14
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 10  YNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIE 68
           Y  GGYV  L  S     + L+ +  H WLD RTR + +E +LYN N N    V+L++E
Sbjct: 121 YPSGGYVVLLPLSREESLKRLAYLQDHNWLDRRTRAVFVEFTLYNANTNLFCVVTLLVE 179


>gnl|CDD|212113 cd10802, YdjC_TTHB029_like, Thermus thermophiles TTHB029 and
           similar proteins.  This subfamily is represented by an
           YdjC-family protein TTHB029 from Thermus thermophilus
           HB8; it is similar to Escherichia coli YdjC, a
           hypothetical protein encoded by the celG gene. TTHB029
           functions as a homodimer. Each of monomer consists of
           (beta/alpha)-barrel fold. The molecular function of
           TTHB029 is unclear.
          Length = 251

 Score = 27.3 bits (61), Expect = 0.88
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 15/53 (28%)

Query: 29  GLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIERLGSHNYLTDSEV 81
           GL+++IIH              +L    + AI   +   +R   ++  TD E+
Sbjct: 214 GLTELIIH-------------PALDTEELKAIEDSAQ--KRQWDYDLFTDPEL 251


>gnl|CDD|226126 COG3598, RepA, RecA-family ATPase [DNA replication, recombination,
           and repair].
          Length = 402

 Score = 26.8 bits (59), Expect = 1.5
 Identities = 11/54 (20%), Positives = 21/54 (38%)

Query: 4   GPKNIIYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNI 57
           G  +I+Y   G  K        +A    + +    + E  +V+ +   LY  +I
Sbjct: 89  GYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDI 142


>gnl|CDD|152775 pfam12340, DUF3638, Protein of unknown function (DUF3638).  This
           domain family is found in eukaryotes, and is
           approximately 230 amino acids in length. There are two
           conserved sequence motifs: LLE and NMG.
          Length = 229

 Score = 25.6 bits (57), Expect = 3.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 22  SESNMAQGLSQMIIHKWLDERTRVILIEC 50
            +  +++  S +   +WLDE +R IL E 
Sbjct: 153 IDGKLSEARSMIKTQQWLDEHSRDILDES 181


>gnl|CDD|223236 COG0158, Fbp, Fructose-1,6-bisphosphatase [Carbohydrate transport
          and metabolism].
          Length = 326

 Score = 25.7 bits (57), Expect = 3.2
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 4/51 (7%)

Query: 11 NGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAII 61
          N  G    LG S +   QG +Q  +  + +E    ILIE      N+  I 
Sbjct: 41 NKAGLAGVLGYSGAENVQGDTQKKLDVFANE----ILIEALKARGNVAGIA 87


>gnl|CDD|179228 PRK01119, PRK01119, hypothetical protein; Provisional.
          Length = 106

 Score = 24.9 bits (54), Expect = 5.6
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 9  IYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVIL-IECSLYNPNINAIIAVSLMI 67
          +  G  ++KD+G+   N   G SQ    + ++ R   I  +E    +   NA+I V +  
Sbjct: 25 VITGVNFMKDIGAGLRNFFGGRSQGYEDELINAREEAIREMEQRAKDIGANAVIGVDIDY 84

Query: 68 ERLGSHN 74
          E LG+ N
Sbjct: 85 EVLGADN 91


>gnl|CDD|234130 TIGR03161, ribazole_CobZ, alpha-ribazole phosphatase CobZ.
          Sequences in the seed alignment were the experimentally
          characterized CobZ of the methanogenic archaeon
          Methanosarcina mazei, and other archaeal proteins found
          similarly next to or very near to other cobalamin
          biosynthesis genes. CobZ replaces the
          alpha-ribazole-phosphate phosphatase (EC 3.1.3.73)
          called CobC in analogous bacterial pathways for
          cobalamin biosynthesis under anaerobic conditions
          [Biosynthesis of cofactors, prosthetic groups, and
          carriers, Heme, porphyrin, and cobalamin].
          Length = 140

 Score = 24.7 bits (54), Expect = 7.4
 Identities = 10/39 (25%), Positives = 19/39 (48%)

Query: 47 LIECSLYNPNINAIIAVSLMIERLGSHNYLTDSEVGIRG 85
           +E  L +PN+ A++  +L++ER G    +        G
Sbjct: 39 ELERYLEDPNVAALLIAALLLERHGKAGGIPGLSDEYEG 77


>gnl|CDD|113218 pfam04439, Adenyl_transf, Streptomycin adenylyltransferase.  Also
          known as Aminoglycoside 6- adenylyltransferase
          (EC:2.7.7.-), this protein confers resistance to
          aminoglycoside antibiotics.
          Length = 282

 Score = 24.3 bits (53), Expect = 9.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 40 DERTRVILIECSLYNPNI 57
          DER R + +E S  NPNI
Sbjct: 18 DERVRAVALEGSRTNPNI 35


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.316    0.135    0.385 

Gapped
Lambda     K      H
   0.267   0.0788    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,416,427
Number of extensions: 353612
Number of successful extensions: 268
Number of sequences better than 10.0: 1
Number of HSP's gapped: 268
Number of HSP's successfully gapped: 11
Length of query: 89
Length of database: 10,937,602
Length adjustment: 57
Effective length of query: 32
Effective length of database: 8,409,424
Effective search space: 269101568
Effective search space used: 269101568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.1 bits)