RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11140
(89 letters)
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.007
Identities = 6/30 (20%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 41 ERTRVILIECSL--YNPNINAIIAVSLMIE 68
E+ + ++ SL Y + +A+ +E
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.3 bits (60), Expect = 0.75
Identities = 12/69 (17%), Positives = 29/69 (42%), Gaps = 15/69 (21%)
Query: 16 VKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNIN--AIIAVSL-MIERLGS 72
++ +E QGL+ I +WL+ + P+ + I +S +I +
Sbjct: 199 IRTTLDAEKVFTQGLN---ILEWLENPSNT---------PDKDYLLSIPISCPLIGVIQL 246
Query: 73 HNYLTDSEV 81
+Y+ +++
Sbjct: 247 AHYVVTAKL 255
Score = 25.0 bits (54), Expect = 5.1
Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 10 YNGGGYVKDLGSSESNMAQGLSQMIIHK---W 38
++G DL ++++ + II W
Sbjct: 463 FDG----SDLRVLSGSISERIVDCIIRLPVKW 490
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast
structural genomics consortiu PSI-biology, apoptosis;
NMR {Homo sapiens}
Length = 70
Score = 25.8 bits (56), Expect = 0.92
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Query: 34 IIHKWLDERTRVILIECSLYNPNINAIIAVSLMIERLGSHNYLTDSEVGIR 84
II W RVIL+EC P+ ++ +++ ++V R
Sbjct: 13 IIILWTRNDDRVILLECQKRGPSSKTFAYLAAKLDK-------NPNQVSER 56
>3dgp_A RNA polymerase II transcription factor B subunit; protein-protein
complex, beta-alpha-beta spilt, heterodimer, damage,
DNA excision; 1.80A {Saccharomyces cerevisiae}
Length = 80
Score = 24.7 bits (54), Expect = 3.0
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 35 IHKWLDERTRVILIECSLYN 54
I W E RVI E SLY+
Sbjct: 8 IRLWQLELDRVITYEGSLYS 27
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha
& beta protein, PLP-dependent transferase, aminotransf
mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB:
2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Length = 425
Score = 25.3 bits (56), Expect = 3.2
Identities = 6/24 (25%), Positives = 10/24 (41%), Gaps = 6/24 (25%)
Query: 18 DLGSSESNMAQGLSQMIIHKWLDE 41
L S +Q++I + L E
Sbjct: 292 TLHPS------TFNQLMISQLLHE 309
>2hhl_A CTD small phosphatase-like protein; CTD phosphatase, keggins anion,
structural genomics, PSI, protein structure initiative;
HET: KEG; 2.10A {Homo sapiens}
Length = 195
Score = 25.0 bits (55), Expect = 3.5
Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 21/57 (36%)
Query: 9 IYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECS----LYNPNINAII 61
+++ G YVKDL + + L +VI+++ S +++P NA+
Sbjct: 120 VFHRGNYVKDLS-------------RLGRELS---KVIIVDNSPASYIFHPE-NAVP 159
>3qle_A TIM50P; chaperone, mitochondrion, preprotein translocation; HET:
1PE; 1.83A {Saccharomyces cerevisiae EC1118}
Length = 204
Score = 25.0 bits (55), Expect = 3.5
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 21/57 (36%)
Query: 9 IYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECS----LYNPNINAII 61
+Y G ++KDL +++ L +VI+I+ P NAI
Sbjct: 112 VYKDGVHIKDLS-------------KLNRDLS---KVIIIDTDPNSYKLQPE-NAIP 151
>2ght_A Carboxy-terminal domain RNA polymerase II polypeptide A small
phosphatase 1; protein-peptide complex, HAD superfamily,
hydrolase; HET: SEP; 1.80A {Homo sapiens} PDB: 2ghq_A*
3pgl_A* 1t9z_A* 1ta0_A* 3l0c_A 3l0y_A 3l0b_A* 2q5e_A
Length = 181
Score = 25.0 bits (55), Expect = 3.6
Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 21/57 (36%)
Query: 9 IYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECS----LYNPNINAII 61
+++ G YVKDL + + L RV++++ S +++P+ NA+
Sbjct: 107 VFHRGNYVKDLS-------------RLGRDLR---RVLILDNSPASYVFHPD-NAVP 146
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation
mutagenesis, regioselectivity transferase; HET: SAH EUG;
1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A*
Length = 368
Score = 24.4 bits (53), Expect = 7.5
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 32 QMIIHKWLDERTRVILIEC 50
+ I H W DE +L C
Sbjct: 268 KWICHDWSDEHCLKLLKNC 286
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent
O-methyltransferase; HET: SAH; 1.80A {Lolium perenne}
PDB: 3p9i_A* 3p9k_A*
Length = 364
Score = 24.0 bits (52), Expect = 7.5
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 32 QMIIHKWLDERTRVILIEC 50
+ I+H W D+ +L C
Sbjct: 266 KWILHDWSDQHCATLLKNC 284
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding
protein, peripheral golgi membrane protein, phospholipid
exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae}
SCOP: a.5.3.1 c.13.1.1
Length = 296
Score = 23.9 bits (52), Expect = 7.8
Identities = 3/11 (27%), Positives = 5/11 (45%)
Query: 34 IIHKWLDERTR 44
+ +LD T
Sbjct: 224 LFKPFLDPVTV 234
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH
HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12
PDB: 1fpx_A* 2qyo_A*
Length = 352
Score = 24.0 bits (52), Expect = 9.6
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 32 QMIIHKWLDERTRVILIEC 50
+ I+H W D+ IL +C
Sbjct: 253 KYILHNWTDKDCLRILKKC 271
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics,
protein structure initiative, NEW YORK structural
genomix research consortium; 2.20A {Antirrhinum majus}
Length = 273
Score = 23.8 bits (52), Expect = 9.9
Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 6/40 (15%)
Query: 13 GGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSL 52
G +LG ++ N + + + K L C
Sbjct: 155 EGQYHELGLNQLNDLELIEYVCKKK-----EGT-LHACGA 188
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.135 0.385
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,330,195
Number of extensions: 66536
Number of successful extensions: 151
Number of sequences better than 10.0: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 17
Length of query: 89
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 32
Effective length of database: 5,110,296
Effective search space: 163529472
Effective search space used: 163529472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.6 bits)