RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11140
         (89 letters)



>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase
          subunit A {Thermotoga maritima [TaxId: 2336]}
          Length = 475

 Score = 23.7 bits (50), Expect = 4.9
 Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 5/28 (17%)

Query: 41 ERTRVILIECSL-----YNPNINAIIAV 63
          E  R  L + SL      +P++ A I+V
Sbjct: 19 EEEREKLPQLSLETIKRLDPHVKAFISV 46


>d1kxla_ b.40.4.3 (A:) CDC13 ssDNA-binding domain {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 187

 Score = 22.9 bits (49), Expect = 6.1
 Identities = 7/35 (20%), Positives = 16/35 (45%)

Query: 46  ILIECSLYNPNINAIIAVSLMIERLGSHNYLTDSE 80
           + I+  +YN  +NAI+     +      +  + S+
Sbjct: 120 MNIKVKMYNGKLNAIVRECEPVPHSQISSIASPSQ 154


>d1g2914 b.40.6.3 (1:302-372) Maltose transport protein MalK,
          C-terminal domain {Archaeon Thermococcus litoralis
          [TaxId: 2265]}
          Length = 71

 Score = 22.0 bits (47), Expect = 9.5
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 55 PNINAIIAVSLMIERLGSHNYLT 77
          P  N + AV  ++E LGS   + 
Sbjct: 4  PGENLVRAVVEIVENLGSERIVR 26


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.135    0.385 

Gapped
Lambda     K      H
   0.267   0.0477    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 318,818
Number of extensions: 12169
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 6
Length of query: 89
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 36
Effective length of database: 1,679,906
Effective search space: 60476616
Effective search space used: 60476616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.5 bits)