Query psy11141
Match_columns 566
No_of_seqs 406 out of 1432
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 19:02:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11141.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11141hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2833|consensus 100.0 3.5E-85 7.5E-90 659.4 31.6 360 70-455 10-395 (395)
2 PLN02407 diphosphomevalonate d 100.0 4.9E-71 1.1E-75 573.3 29.2 298 70-390 7-333 (343)
3 TIGR01240 mevDPdecarb diphosph 100.0 9.3E-66 2E-70 531.9 29.0 289 70-388 4-304 (305)
4 COG3407 MVD1 Mevalonate pyroph 100.0 7.7E-61 1.7E-65 493.8 28.6 293 68-391 7-311 (329)
5 COG0083 ThrB Homoserine kinase 100.0 4.5E-33 9.7E-38 285.8 25.8 243 102-390 17-278 (299)
6 PTZ00299 homoserine kinase; Pr 100.0 3.1E-29 6.7E-34 262.9 24.1 249 102-392 21-304 (336)
7 PRK01212 homoserine kinase; Pr 99.9 2.4E-26 5.2E-31 236.4 25.0 244 102-388 17-280 (301)
8 TIGR00191 thrB homoserine kina 99.9 8.6E-26 1.9E-30 233.3 25.5 242 102-387 14-280 (302)
9 PLN02451 homoserine kinase 99.9 1.1E-24 2.4E-29 231.5 24.6 252 100-390 64-344 (370)
10 TIGR00144 beta_RFAP_syn beta-R 99.9 1.6E-21 3.5E-26 204.0 26.9 248 103-390 23-304 (324)
11 KOG2833|consensus 99.9 1.2E-23 2.6E-28 213.7 8.5 101 451-563 125-236 (395)
12 PRK03188 4-diphosphocytidyl-2- 99.9 1.6E-21 3.4E-26 201.2 23.6 234 104-386 26-275 (300)
13 PRK14611 4-diphosphocytidyl-2- 99.9 1.8E-21 3.8E-26 199.0 21.0 222 106-383 29-261 (275)
14 PRK02534 4-diphosphocytidyl-2- 99.9 3E-21 6.5E-26 200.4 22.0 248 101-390 23-293 (312)
15 PRK00128 ipk 4-diphosphocytidy 99.9 1.3E-20 2.9E-25 192.8 20.9 230 105-388 29-273 (286)
16 PRK14612 4-diphosphocytidyl-2- 99.9 8.9E-21 1.9E-25 193.8 18.7 228 103-389 27-266 (276)
17 PRK14613 4-diphosphocytidyl-2- 99.8 2.3E-19 5E-24 185.6 20.9 198 149-390 88-289 (297)
18 PRK14616 4-diphosphocytidyl-2- 99.8 2.4E-19 5.2E-24 184.2 20.6 232 105-390 30-276 (287)
19 PLN02407 diphosphomevalonate d 99.8 7.7E-21 1.7E-25 198.6 8.6 101 444-556 111-228 (343)
20 PRK14608 4-diphosphocytidyl-2- 99.8 7.4E-19 1.6E-23 181.2 20.2 227 106-388 34-279 (290)
21 PRK03926 mevalonate kinase; Pr 99.8 3.7E-18 8E-23 175.8 24.3 234 103-387 21-282 (302)
22 PRK14615 4-diphosphocytidyl-2- 99.8 1.9E-18 4E-23 178.8 19.0 242 104-387 32-287 (296)
23 PTZ00298 mevalonate kinase; Pr 99.8 7.5E-18 1.6E-22 176.4 23.5 203 153-392 93-314 (328)
24 PRK01123 shikimate kinase; Pro 99.8 6.6E-18 1.4E-22 173.3 22.2 217 108-387 24-266 (282)
25 TIGR00154 ispE 4-diphosphocyti 99.8 5.1E-18 1.1E-22 175.2 21.1 233 105-389 28-276 (293)
26 PRK14610 4-diphosphocytidyl-2- 99.8 1.3E-17 2.8E-22 171.5 18.9 232 105-389 30-272 (283)
27 COG1947 IspE 4-diphosphocytidy 99.8 2.4E-17 5.2E-22 169.2 18.1 228 106-389 31-274 (289)
28 PRK14614 4-diphosphocytidyl-2- 99.7 1.8E-16 3.9E-21 162.7 19.8 225 106-387 31-269 (280)
29 PRK00650 4-diphosphocytidyl-2- 99.7 1.7E-16 3.7E-21 163.7 18.8 181 149-389 75-259 (288)
30 TIGR01920 Shik_kin_archae shik 99.7 7.4E-16 1.6E-20 156.8 23.2 217 108-387 18-254 (261)
31 TIGR00549 mevalon_kin mevalona 99.7 5.9E-16 1.3E-20 156.8 22.2 179 154-372 78-272 (273)
32 PRK14609 4-diphosphocytidyl-2- 99.7 3.2E-16 6.9E-21 160.2 18.1 107 105-216 27-146 (269)
33 PRK00343 ipk 4-diphosphocytidy 99.7 9.6E-16 2.1E-20 156.9 20.8 217 105-389 33-264 (271)
34 PRK03817 galactokinase; Provis 99.7 1E-15 2.3E-20 161.4 20.1 211 153-389 85-329 (351)
35 TIGR00131 gal_kin galactokinas 99.7 6.3E-15 1.4E-19 157.5 22.0 252 101-390 35-366 (386)
36 PRK05322 galactokinase; Provis 99.7 8.2E-15 1.8E-19 157.0 21.7 205 153-389 111-366 (387)
37 TIGR01220 Pmev_kin_Gr_pos phos 99.7 1.3E-14 2.9E-19 153.9 22.8 213 153-387 99-345 (358)
38 COG1577 ERG12 Mevalonate kinas 99.6 9.7E-15 2.1E-19 151.7 20.8 239 103-387 20-295 (307)
39 KOG1537|consensus 99.6 1.4E-15 3.1E-20 152.1 13.6 211 152-398 92-340 (355)
40 PRK00555 galactokinase; Provis 99.6 1E-14 2.3E-19 155.0 20.6 225 153-439 90-362 (363)
41 COG3407 MVD1 Mevalonate pyroph 99.6 4.6E-16 1E-20 161.8 7.7 97 445-556 97-209 (329)
42 TIGR01240 mevDPdecarb diphosph 99.6 2.3E-15 4.9E-20 156.7 9.3 98 445-556 92-205 (305)
43 PRK05905 hypothetical protein; 99.6 2.1E-14 4.7E-19 146.1 14.2 172 149-372 81-253 (258)
44 PRK05101 galactokinase; Provis 99.5 9.3E-13 2E-17 141.0 24.7 204 153-389 111-361 (382)
45 PRK04181 4-diphosphocytidyl-2- 99.5 9E-14 2E-18 141.5 15.3 98 153-275 85-185 (257)
46 PLN02677 mevalonate kinase 99.5 1.4E-12 3E-17 139.9 19.5 193 153-387 128-365 (387)
47 COG2605 Predicted kinase relat 99.4 3.9E-11 8.5E-16 122.5 20.5 246 106-388 30-314 (333)
48 PRK13412 fkp bifunctional fuco 99.4 1.4E-11 3E-16 143.7 18.5 208 153-387 725-951 (974)
49 COG1685 Archaeal shikimate kin 99.3 4.6E-10 1E-14 113.6 20.9 214 109-387 25-260 (278)
50 COG0153 GalK Galactokinase [Ca 99.3 3.7E-10 8E-15 119.8 20.5 224 153-439 114-389 (390)
51 PLN02521 galactokinase 99.3 4.9E-10 1.1E-14 123.9 21.5 66 153-218 148-226 (497)
52 COG1907 Predicted archaeal sug 99.2 6.6E-10 1.4E-14 113.6 20.4 256 103-392 24-293 (312)
53 COG1829 Predicted archaeal kin 99.2 6.5E-10 1.4E-14 113.0 18.6 217 103-372 25-252 (283)
54 PLN02865 galactokinase 99.1 7.4E-09 1.6E-13 112.5 21.7 210 153-389 129-395 (423)
55 TIGR01219 Pmev_kin_ERG8 phosph 99.0 5.2E-09 1.1E-13 114.4 15.5 186 166-375 152-418 (454)
56 PF00288 GHMP_kinases_N: GHMP 99.0 8.1E-10 1.8E-14 89.8 5.0 57 156-212 1-67 (67)
57 PTZ00290 galactokinase; Provis 98.8 3.1E-07 6.7E-12 101.1 20.0 109 292-440 340-457 (468)
58 KOG1511|consensus 98.8 3.3E-07 7.2E-12 96.0 18.3 193 155-388 132-360 (397)
59 PF08544 GHMP_kinases_C: GHMP 98.5 1.4E-07 3E-12 79.0 5.8 81 298-389 1-84 (85)
60 COG4542 PduX Protein involved 98.1 0.00011 2.3E-09 74.7 15.1 196 151-387 80-280 (293)
61 COG3890 ERG8 Phosphomevalonate 94.4 0.051 1.1E-06 56.3 4.7 55 167-222 108-177 (337)
62 KOG4644|consensus 93.2 0.86 1.9E-05 50.9 11.7 193 152-372 689-904 (948)
63 PRK14611 4-diphosphocytidyl-2- 89.7 1.8 3.9E-05 44.7 9.2 51 446-496 88-146 (275)
64 PRK01212 homoserine kinase; Pr 78.9 9.6 0.00021 39.5 8.8 39 458-496 109-150 (301)
65 KOG4519|consensus 76.9 3.1 6.6E-05 44.6 4.3 53 167-220 153-230 (459)
66 KOG0631|consensus 60.4 8.3 0.00018 43.1 3.5 46 153-198 141-191 (489)
67 PRK00128 ipk 4-diphosphocytidy 58.6 29 0.00063 35.7 7.0 37 458-494 112-148 (286)
68 PRK01123 shikimate kinase; Pro 51.3 22 0.00047 36.8 4.7 51 446-496 83-152 (282)
69 TIGR00549 mevalon_kin mevalona 43.6 26 0.00056 35.6 3.8 39 458-496 106-153 (273)
70 TIGR01920 Shik_kin_archae shik 43.6 64 0.0014 33.1 6.7 40 456-495 90-140 (261)
71 TIGR00191 thrB homoserine kina 39.4 31 0.00068 36.0 3.7 39 458-496 108-149 (302)
72 PRK02534 4-diphosphocytidyl-2- 34.8 2.3E+02 0.005 29.6 9.4 38 458-496 114-152 (312)
73 KOG0631|consensus 23.5 1.5E+02 0.0033 33.5 5.8 71 307-389 387-459 (489)
No 1
>KOG2833|consensus
Probab=100.00 E-value=3.5e-85 Score=659.35 Aligned_cols=360 Identities=48% Similarity=0.780 Sum_probs=319.6
Q ss_pred CCCc-ceecccccccCCcccccccccccccccccCCCccceeecCCCceeEEEEEecCCCCccEEEEcCccchhh--h--
Q psy11141 70 ISAP-YIRGLEYLNILPPVQVKLSNNDIITLKSELNGIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKKLAEQ--E-- 144 (566)
Q Consensus 70 ~~~~-~i~~~~~~~~~~~~~~k~~g~~D~~l~lP~ndSLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~~~~~~--~-- 144 (566)
.+|| |||+|||||| ||+.||||.|||||+||++|+|+|.||+..++++++|++||||++++.. +
T Consensus 10 ~taPvNIAvIKYWGK-----------RD~~l~LP~N~SISvTL~~D~L~t~Tt~~~s~~fe~dr~wLNGk~~~i~~~R~q 78 (395)
T KOG2833|consen 10 ATAPVNIAVIKYWGK-----------RDEELNLPTNDSISVTLSQDDLCTLTTAVVSPSFEEDRMWLNGKEVPISNKRYQ 78 (395)
T ss_pred eeccceeeeeeeccc-----------cchhhcCCcCCceeEEeccccceeeeeEeeccccccceeEECCceeccccHHHH
Confidence 3678 9999999986 9999999999999999999999999999999999999999999873221 1
Q ss_pred -------hh----------hhccCCccEEEEEEcCCCCccccccchhhHHHHHHHHHHHhCCC--HHHHHHHHHHccCCc
Q psy11141 145 -------KS----------SREMADWKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLN--TSEVSHIARQGSGSA 205 (566)
Q Consensus 145 -------~~----------l~~~~~~~v~I~s~nnIP~aaGLGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~GSGSa 205 (566)
+. ++....+++||.|+||||++||||||||++||+++|++++|+++ .+||+++||+|||||
T Consensus 79 ~cl~e~r~~~~d~~~~~~~~~~~~~~~lHI~S~nNFPtAAGLASSAAG~Aalv~alarly~l~~~~~els~iAR~GSGSA 158 (395)
T KOG2833|consen 79 RCLREIRRLARDREESEASLPSNGPLKLHIASVNNFPTAAGLASSAAGFAALVLALARLYGLDDSPEELSRIARQGSGSA 158 (395)
T ss_pred HHHHHHHHHhhhhhhhhcccCcCCCeeEEEEecCCCcchhhhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHhccCchh
Confidence 00 01222468999999999999999999999999999999999999 899999999999999
Q ss_pred hhhhcCCeEEEEeCCCCCCCCCCCccccccccceeEEEccCCCCCCceEEEEEEECCCCCCCCChHHHhhhccCCchHHH
Q psy11141 206 CRSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRTTLTSTLYEH 285 (566)
Q Consensus 206 arSi~GGfV~w~~~~~G~~~dg~~~~~~~~~~~s~a~~I~~~~~wp~L~ivilVv~~~~K~vsST~~mr~~v~ts~~~~~ 285 (566)
|||+|||||.|++ |..+||.| |.++++.+..|||+++++++|++..+|+++||++||++++||.++++
T Consensus 159 CRSl~GG~V~W~m---G~~~DGsD---------svAvq~~p~~~W~el~ililVvs~~~K~t~ST~GM~~sveTS~L~qh 226 (395)
T KOG2833|consen 159 CRSLYGGFVAWEM---GELDDGSD---------SVAVQIAPSSHWPELRILILVVSDAKKKTGSTEGMRRSVETSQLLQH 226 (395)
T ss_pred hhhhhcceeEeec---ccccCCCc---------eeEEEeccccCCCceEEEEEEeccccccccccHHHHHHHHHhHHHHH
Confidence 9999999999999 99999988 89999998899999999999999999999999999999999999999
Q ss_pred HHhhhccchHHHHHHHHHcCCHHHHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCC
Q psy11141 286 RVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAG 365 (566)
Q Consensus 286 ~v~~~~~~~v~~li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAG 365 (566)
|++++++.|+..|.+||.++||+.|++++|.|+|+||++|++++|||.||++.+++||++||++|+..|...++||||||
T Consensus 227 Ri~~vVP~Ri~~m~eaI~~rDF~~FA~lTm~DSNqFHAvclDT~PPI~YmNd~S~~iI~~vh~~N~~~G~t~vAYTFDAG 306 (395)
T KOG2833|consen 227 RIESVVPQRIQQMREAIRERDFESFAKLTMKDSNQFHAVCLDTFPPIFYLNDTSWRIISLVHEFNASAGGTRVAYTFDAG 306 (395)
T ss_pred HHHhhhHHHHHHHHHHHHhcCHHHHHHHHHhcchhhhhhhhccCCCeEEeccchHHHHHHHHHHHhccCCeeEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999877889999999999
Q ss_pred cceEEeeccCCHHHHHHHHHhhCCCCCCCCCccccCcccccCCCCCCCCCCC--CCCCCCccEEEEccCCCCcEEcCCCC
Q psy11141 366 PNACLYVLENTVPLLLSTLVQYFPPSSGISAPYIRGLEYLNILPPVQLPSFT--PQPAGLLQYLISTKIGSGPKILDDIP 443 (566)
Q Consensus 366 PnV~~l~~~~~~~~v~~~L~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ii~t~vG~Gp~~~~~~~ 443 (566)
||.++|+.+++..++++.+.+.|+...++...|.+|.-..-.+....- .+. +.-.+.++|||+|+||+||+ +.+ .
T Consensus 307 PNAvl~~l~e~~~~~l~~~~~~f~~~p~~dk~y~~~~~~~~~~~~~~~-~~~~~l~~~~~vs~~I~t~vG~GP~-l~~-~ 383 (395)
T KOG2833|consen 307 PNAVLIVLEENVSQLLAAVLKVFPPVPGWDKTYGKGLLEQFKVAAESS-SIKDSLGSQGGVSYIILTRVGGGPK-LQE-Q 383 (395)
T ss_pred CceEEEEhhhhHHHHHHHHHHhcCCCCCccceeeeccccccCcccccc-chhhhccccCCeeEEEEecCCCCCc-ccC-c
Confidence 999999999999999999999998776555677776332111111110 111 11149999999999999999 666 7
Q ss_pred CCcccCCCCCch
Q psy11141 444 NNHLLNEAGAPK 455 (566)
Q Consensus 444 ~~~Lld~~Glp~ 455 (566)
+++|+|.+||||
T Consensus 384 ~~~Li~~~GlPk 395 (395)
T KOG2833|consen 384 NESLIDPSGLPK 395 (395)
T ss_pred hhhhcCCCCCCC
Confidence 899999999996
No 2
>PLN02407 diphosphomevalonate decarboxylase
Probab=100.00 E-value=4.9e-71 Score=573.31 Aligned_cols=298 Identities=49% Similarity=0.796 Sum_probs=269.1
Q ss_pred CCCcceecccccccCCcccccccccccccccccCCCccceeecCCCceeEEEEEecCCCCccEEEEcCccchhh----hh
Q psy11141 70 ISAPYIRGLEYLNILPPVQVKLSNNDIITLKSELNGIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKKLAEQ----EK 145 (566)
Q Consensus 70 ~~~~~i~~~~~~~~~~~~~~k~~g~~D~~l~lP~ndSLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~~~~~~----~~ 145 (566)
++|||||+|||||| +|++||||.|+|||+||++++|||+|+|++++++++|+++|||++.+.. .+
T Consensus 7 ~A~~NIALIKYWGK-----------rD~~l~LP~nsSiSlTL~~~~~~T~Ttv~~~~~~~~D~~~LNG~~~~~~~~rv~~ 75 (343)
T PLN02407 7 QAPTNIAVIKYWGK-----------RDEKLILPINSSISVTLDPDHLCATTTVAVSPSFDQDRLWLNGKEISLSGGRYQN 75 (343)
T ss_pred Eecceeeeehhccc-----------ccccccCCCCCeeEEEccCCcceeeEEEEECCCCCCCEEEECCEecCcccHHHHH
Confidence 58999999999986 9999999999999999998889999999999888899999999853321 11
Q ss_pred hh---h--ccC----------------CccEEEEEEcCCCCccccccchhhHHHHHHHHHHHhCCC---HHHHHHHHHHc
Q psy11141 146 SS---R--EMA----------------DWKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLN---TSEVSHIARQG 201 (566)
Q Consensus 146 ~l---~--~~~----------------~~~v~I~s~nnIP~aaGLGSSAA~aAAla~Aln~L~gL~---~eeLs~iAr~G 201 (566)
.+ + .+. ..+++|+|+|+||+++|||||||++||++.|++++++++ .++|+++||+|
T Consensus 76 ~l~~~r~~~~~~~~~~~~~~i~~~~~~~~~~~I~S~N~~PtaaGLaSSAs~~aAl~~al~~~~~~~~~~~~~ls~lAr~G 155 (343)
T PLN02407 76 CLREIRARATDVEDEEKGIKITKKDWEKLHVHIASYNNFPTAAGLASSAAGFACLVFALAKLMNVKEDFPGELSAIARQG 155 (343)
T ss_pred HHHHHHHHhcccccccccccccccccccccEEEEeccCCccccchHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHhcc
Confidence 11 1 121 226899999999999999999999999999999999987 67999999999
Q ss_pred cCCchhhhcCCeEEEEeCCCCCCCCCCCccccccccceeEEEccCCCCCCceEEEEEEECCCCCCCCChHHHhhhccCCc
Q psy11141 202 SGSACRSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRTTLTST 281 (566)
Q Consensus 202 SGSaarSi~GGfV~w~~~~~G~~~dg~~~~~~~~~~~s~a~~I~~~~~wp~L~ivilVv~~~~K~vsST~~mr~~v~ts~ 281 (566)
|||+|||+|||||.|.+ |..+|+.+ ++++++..+.+||+|+++++|++..+|+++||++|+.++.|||
T Consensus 156 SGSa~rS~~Gg~v~w~~---G~~~d~~d---------s~A~~i~~~~~~~dl~~~i~vv~~~~K~vsSt~GM~~tv~TSp 223 (343)
T PLN02407 156 SGSACRSLYGGFVKWNM---GKKEDGSD---------SIAVQLADEKHWDDLVIIIAVVSSRQKETSSTSGMRESVETSP 223 (343)
T ss_pred ChHHHHHhhCCeEEecC---CCCCCCCc---------eeEEECCCccCCccceEEEEEEcCCcCCCCchHHHHHhhhcCh
Confidence 99999999999999998 86556666 8999998777899999999999999999999999999999999
Q ss_pred hHHHHHhhhccchHHHHHHHHHcCCHHHHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEE
Q psy11141 282 LYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYT 361 (566)
Q Consensus 282 ~~~~~v~~~~~~~v~~li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~t 361 (566)
+|+.|++++++.++..|++||+++||+.||+++|.|+++||++|++++|||.||+|++.++|+.|+++|+..|.+.++||
T Consensus 224 ~~~~w~~~~~~~~~~~~~~Ai~~~Df~~~gei~e~ds~~mHA~~l~s~Pp~~Y~~~~S~~ii~~V~~~r~~~g~~~v~yT 303 (343)
T PLN02407 224 LLQHRAKEVVPKRILQMEEAIKNRDFASFAKLTCADSNQFHATCLDTSPPIFYMNDTSRRIISLVEKWNRSEGTPQVAYT 303 (343)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEeChHHHHHHHHHHHHHHhcCCccEEEE
Confidence 99999997789999999999999999999999999999999999999999999999999999999999976563489999
Q ss_pred eCCCcceEEeeccCCHHH-HHHHHHhhCCC
Q psy11141 362 FDAGPNACLYVLENTVPL-LLSTLVQYFPP 390 (566)
Q Consensus 362 sGAGPnV~~l~~~~~~~~-v~~~L~~~f~~ 390 (566)
+||||||++||++++.++ |++.+.++|.+
T Consensus 304 ~DAGPNv~vl~~~~~~~~~v~~~~~~~~~~ 333 (343)
T PLN02407 304 FDAGPNAVLIALNRKVAAQLLQRLLYYFPP 333 (343)
T ss_pred ecCCCCEEEEEChhhhHHHHHHHHHHhcCC
Confidence 999999999999999886 99888777654
No 3
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase
Probab=100.00 E-value=9.3e-66 Score=531.86 Aligned_cols=289 Identities=37% Similarity=0.571 Sum_probs=264.6
Q ss_pred CCCcceecccccccCCcccccccccccccccccCCCccceeecCCCceeEEEEEecCCCCccEEEEcCccchh--h---h
Q psy11141 70 ISAPYIRGLEYLNILPPVQVKLSNNDIITLKSELNGIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKKLAE--Q---E 144 (566)
Q Consensus 70 ~~~~~i~~~~~~~~~~~~~~k~~g~~D~~l~lP~ndSLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~~~~~--~---~ 144 (566)
++|||||+|||||| +|+++|||.|+|||+||| .+||+|+|+++++++.|+++|||+.... . .
T Consensus 4 ~a~~NIAliKYwGk-----------~d~~~~lP~n~SisltLd--~~~T~ttv~~~~~~~~d~~~lnG~~~~~~~~~~v~ 70 (305)
T TIGR01240 4 TAYVNIATIKYWGK-----------RNTKLNLPTNSSISLTLS--QLRTLTSVAFADEFERDTFYLNGTLQHSIDNEKTS 70 (305)
T ss_pred eccchhHHhhhccc-----------ccccccCCCCCeeEEEcC--CCccEEEEEECCCCCcceEEECCcCCCCcchHHHH
Confidence 58999999999986 999999999999999999 6999999999988888999999964111 1 1
Q ss_pred hhh-----hccCCccEEEEEEcCCCCccccccchhhHHHHHHHHHHHhCCC--HHHHHHHHHHccCCchhhhcCCeEEEE
Q psy11141 145 KSS-----REMADWKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLN--TSEVSHIARQGSGSACRSMFGGFVRWK 217 (566)
Q Consensus 145 ~~l-----~~~~~~~v~I~s~nnIP~aaGLGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~GSGSaarSi~GGfV~w~ 217 (566)
..+ ..+...+++|+++|+||+++|||||||++||++.|++++++++ .+||+++||+|+||+|||+|||||.|.
T Consensus 71 ~~l~~~~~~~~~~~~v~I~~~n~iP~~aGLgSSAA~~aA~~~Al~~l~~l~l~~~eL~~lA~~gsGsa~~s~~GG~v~~~ 150 (305)
T TIGR01240 71 NCLDDFRQLRKEQEKLHIVSQNNFPTAAGLASSASGLAALVSACAKLYQLPLDTSELSRIARKGSGSACRSLFGGYVAWE 150 (305)
T ss_pred HHHHHHHHhcCCCCceEEEEecCCCCCCccchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCeeeeeecCeEEEE
Confidence 111 1345567999999999999999999999999999999999988 899999999999999999999999998
Q ss_pred eCCCCCCCCCCCccccccccceeEEEccCCCCCCceEEEEEEECCCCCCCCChHHHhhhccCCchHHHHHhhhccchHHH
Q psy11141 218 TLPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRTTLTSTLYEHRVNTIVPSRCSG 297 (566)
Q Consensus 218 ~~~~G~~~dg~~~~~~~~~~~s~a~~I~~~~~wp~L~ivilVv~~~~K~vsST~~mr~~v~ts~~~~~~v~~~~~~~v~~ 297 (566)
. |. |+++ +++++++.+.+|+++++++++++..+|+++||++||++++||++|++|+++ +..++..
T Consensus 151 ~---g~--~~~~---------s~a~~i~~~~~~~~~~~~v~vv~~~~k~vsSt~gm~~~~~ts~~~~~~v~~-~~~~l~~ 215 (305)
T TIGR01240 151 K---GK--DDHS---------SAAVQVADDSDWPQXAMCVLVVNDIKKDVSSRQGMQLTVATSELFKEWIEH-VVPDFEV 215 (305)
T ss_pred c---CC--CCCC---------eeEEECCCccccccceEEEEEcCCCCCCCCCHHHHHHhhhcCccHHHHHHH-HHHHHHH
Confidence 8 74 4544 899999877789999999999999999999999999999999999999998 6768999
Q ss_pred HHHHHHcCCHHHHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCcceEEeeccCCH
Q psy11141 298 MEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLENTV 377 (566)
Q Consensus 298 li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV~~l~~~~~~ 377 (566)
|++||.++||+.|++++|.|+++||++|++++||+.||+|++.++|+.|+++|+. | +.++||+||||||++||++++.
T Consensus 216 ~~~ai~~~D~~~~g~~~e~~~~~mHa~~~~~~p~~~y~~~~s~~ii~~v~~~r~~-g-~~~~~T~DAGpNv~vl~~~~~~ 293 (305)
T TIGR01240 216 XRKAIKTKDFATFGKETEANSLSMHATTLDAFPPFFYLNDTSKRAMSAVHTLRQG-G-TICYFTMDAGPNVKVLYLAENL 293 (305)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCCCeEEECHHHHHHHHHHHHHHhC-C-CcEEEEEcCCCCEEEEEccccH
Confidence 9999999999999999999999999999999999999999999999999999975 7 8999999999999999999999
Q ss_pred HHHHHHHHhhC
Q psy11141 378 PLLLSTLVQYF 388 (566)
Q Consensus 378 ~~v~~~L~~~f 388 (566)
++|.+.|.+.|
T Consensus 294 ~~v~~~~~~~~ 304 (305)
T TIGR01240 294 SKLFEFIYKLF 304 (305)
T ss_pred HHHHHHHHHhc
Confidence 99999998876
No 4
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]
Probab=100.00 E-value=7.7e-61 Score=493.80 Aligned_cols=293 Identities=37% Similarity=0.543 Sum_probs=263.4
Q ss_pred CCCCCcceecccccccCCcccccccccccccccccCCCccceeecCCCceeEEEE-EecCCCCccEEEEcCccchhh-h-
Q psy11141 68 SGISAPYIRGLEYLNILPPVQVKLSNNDIITLKSELNGIEPIEITFQRMHAKTSV-ALSPDFTEDKLWLNGKKLAEQ-E- 144 (566)
Q Consensus 68 ~~~~~~~i~~~~~~~~~~~~~~k~~g~~D~~l~lP~ndSLSltLd~~~lyt~TtV-~~s~~~~~d~i~lnG~~~~~~-~- 144 (566)
.+.+|||||+|||||| +|+.||||.|+||||||+ ++|++|++ ++.++.++|+++|||+..... +
T Consensus 7 t~~ay~nialIKywGk-----------~D~~l~iP~~~SiS~t~~--df~t~t~~~~~~~~~~~D~~~lNG~~~~~~~~k 73 (329)
T COG3407 7 TASAYPNIALIKYWGK-----------RDEALNIPLNSSISVTLE--DFSTTTTAEELTENDEEDTFILNGELSEDENEK 73 (329)
T ss_pred eeEecchhHHHHhccc-----------cchhhcCCCCCeeEEEec--cccceeEEEEecCCCCccEEEECCccCchHHHH
Confidence 4579999999999986 899999999999999997 69999998 667777889999999863332 1
Q ss_pred --hhh-----hccCCccEEEEEEcCCCCccccccchhhHHHHHHHHHHHhCCC--HHHHHHHHHHccCCchhhhcCCeEE
Q psy11141 145 --KSS-----REMADWKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLN--TSEVSHIARQGSGSACRSMFGGFVR 215 (566)
Q Consensus 145 --~~l-----~~~~~~~v~I~s~nnIP~aaGLGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~GSGSaarSi~GGfV~ 215 (566)
+.+ +++...+++|+++|++|+|+|||||||++||+++|++++++++ ..+|+++||+||||+|||+||||+.
T Consensus 74 ~~~~ld~~R~~~~~~~~~~i~s~n~~ptaaGLaSSaag~AAl~~Al~~~~~~~~d~~~lS~~AR~gSGSa~RS~~Gg~~~ 153 (329)
T COG3407 74 ARRVLDRFRKEYGISFKVKIVSYNNFPTAAGLASSAAGAAALAAALNRLYDLDLDDEFLSRIARLGSGSASRSIFGGFVL 153 (329)
T ss_pred HHHHHHHHHHhhcccceEEEEEecCCCccccccccHHHHHHHHHHHHhhhccCCCHHHHHHHHHHhccchhhhhcCCeeE
Confidence 111 3566789999999999999999999999999999999999988 9999999999999999999999999
Q ss_pred EEeCCCCCCCCCCCccccccccceeEEEccCCCCCCceEEEEEEECCCCCCCCChHHHhhhccCCchHHHHHhhhccchH
Q psy11141 216 WKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRTTLTSTLYEHRVNTIVPSRC 295 (566)
Q Consensus 216 w~~~~~G~~~dg~~~~~~~~~~~s~a~~I~~~~~wp~L~ivilVv~~~~K~vsST~~mr~~v~ts~~~~~~v~~~~~~~v 295 (566)
|.. |. |++ +..+++.+...|++++++++++....|+++||++|+.++.+|++|++|++. .....
T Consensus 154 W~~---~~---g~~---------~~~~~~~~~~~~~e~~~i~~~~~~~~k~vsS~~gm~~~~~tS~~y~~w~~~-~~~~~ 217 (329)
T COG3407 154 WEK---GE---GED---------SAAEQLFRLDLWKELAMIVLVISPKKKKVSSREGMQLTAETSPFYDAWLEH-SEEDL 217 (329)
T ss_pred ecc---CC---CCc---------cceeeeccccCccccceEEEEEccccCCCCchHHHHHHHHcChHHHHHHHH-HHHhH
Confidence 987 53 444 567777666678899999999999999999999999988999999999998 77778
Q ss_pred HHHHHHHHcCCHHHHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCcceEEeeccC
Q psy11141 296 SGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLEN 375 (566)
Q Consensus 296 ~~li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV~~l~~~~ 375 (566)
..|+.+++++||+.|++++|+|++.||++++++.||+.|+++++.+||+.|+++|+. |. .++||+||||||+++|+++
T Consensus 218 ~~m~~~~~~~Df~~i~~~~e~dsl~mHA~l~~s~p~~~y~~~~s~~ii~~v~~~r~~-g~-~~~fT~DaGPnV~v~~~~~ 295 (329)
T COG3407 218 EEMKEAIREKDFEKIGELAENDSLEMHATLMSSGPPFFYLTDESLRIIEFVHELRKE-GN-AVYFTMDAGPNVKVITLEE 295 (329)
T ss_pred HHHHHHHhccCHHHHHHHHHhhHHHHHHHHhccCCceEEECccHHHHHHHHHHHHhc-CC-ceEEEEcCCCceEEEEecc
Confidence 999999999999999999999999999999999999999999999999999999986 63 7999999999999999999
Q ss_pred CHHHHHHHHHhhCCCC
Q psy11141 376 TVPLLLSTLVQYFPPS 391 (566)
Q Consensus 376 ~~~~v~~~L~~~f~~~ 391 (566)
++.++.+.+...+...
T Consensus 296 ~l~~~~~~~~~~~~~~ 311 (329)
T COG3407 296 NLIDLLEILKTLECID 311 (329)
T ss_pred cHHHHHHHHhhccccc
Confidence 9999999998876553
No 5
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.5e-33 Score=285.82 Aligned_cols=243 Identities=18% Similarity=0.164 Sum_probs=191.7
Q ss_pred cCCCccceeecCCCceeEEEEEecCCCCccEEEEcCc---cchhhhhh---------h-hccCCccEEEEEEcCCCCccc
Q psy11141 102 ELNGIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGK---KLAEQEKS---------S-REMADWKMHICSENNFPTAAG 168 (566)
Q Consensus 102 P~ndSLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~---~~~~~~~~---------l-~~~~~~~v~I~s~nnIP~aaG 168 (566)
|+|||||++|+ +|.++.+....+ +-++.++|. .++.+.++ + ..+.+.+++|+++|+||.++|
T Consensus 17 pGFD~lGlAl~---~~~~~~v~~~~~--~~~i~~~g~~~~~iP~~~~n~~~~~~~~~~~~~~~~~~~~i~i~k~IP~~rG 91 (299)
T COG0083 17 PGFDVLGLALD---LYNDVVVVEVVD--KFEIEVEGEGADKIPLDPENLVYQAALKFLEALGIEAGVKIRIEKGIPLGRG 91 (299)
T ss_pred CCccceeeecc---ccCcEEEEEecC--cEEEEEecccccCCCCCcceeHHHHHHHHHHHhCCCccEEEEEEcCCCCCCC
Confidence 99999999999 677777665443 456666774 24444322 1 245555699999999999999
Q ss_pred cccchhhHHHHHHHHHHHhCCC--HHHHHHHHHHccC---CchhhhcCCeEEEEeCCCCCCCCCCCccccccccceeEEE
Q psy11141 169 LASSAAGYSCLVFTLAYALGLN--TSEVSHIARQGSG---SACRSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQ 243 (566)
Q Consensus 169 LGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~GSG---SaarSi~GGfV~w~~~~~G~~~dg~~~~~~~~~~~s~a~~ 243 (566)
||||||++||++.|+|++++++ ++++.++|..++| |+++|++||++++.+ . +. ....+
T Consensus 92 LGSSaAsiVAal~aan~l~~~~L~~~~ll~~a~~~EgHpDNVapa~lGG~~l~~~---~-----~~---------~~~~~ 154 (299)
T COG0083 92 LGSSAASIVAALAAANELAGLPLSKEELLQLALEIEGHPDNVAPAVLGGLVLVEE---E-----SG---------IISVK 154 (299)
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCCchHHHHhhCCEEEEee---c-----CC---------ceEEE
Confidence 9999999999999999999998 9999999999999 689999999987654 1 11 34666
Q ss_pred ccCCCCCC-ceEEEEEEECCCCCCCCChHHHhhhccCCchHHHHHhhhccchHHHHHHHHHcCCHHHHHHHHHhchhhhh
Q psy11141 244 IISESYWG-SMRVIILVVNDQAKSTSSTDGMQRTTLTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFH 322 (566)
Q Consensus 244 I~~~~~wp-~L~ivilVv~~~~K~vsST~~mr~~v~ts~~~~~~v~~~~~~~v~~li~AL~~~D~e~lgel~~~Dsn~LH 322 (566)
++ |+ ++++++++|+.+ .||+.+|+++|++..+++.+.+ .++++.|+.||.++|.+.+ +.+|+| .+|
T Consensus 155 v~----~~~~~~~v~~iP~~e----~sT~~aR~vLP~~~~~~daV~n--~s~~a~lv~al~~~~~~l~-~~~~~D--~ih 221 (299)
T COG0083 155 VP----FPSDLKLVVVIPNFE----VSTAEARKVLPKSYSRKDAVFN--LSRAALLVAALLEGDPELL-RAMMKD--VIH 221 (299)
T ss_pred cc----CCcceEEEEEeCCcc----ccHHHHHHhccccCCHHHHHHH--HHHHHHHHHHHHcCCHHHH-HHHhcc--ccc
Confidence 64 44 888898887654 3899999999999999999985 8899999999999995555 555665 899
Q ss_pred hcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCcceEEeeccCCHHHHHHHHHhhCCC
Q psy11141 323 ACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLENTVPLLLSTLVQYFPP 390 (566)
Q Consensus 323 a~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV~~l~~~~~~~~v~~~L~~~f~~ 390 (566)
+++|. .+.|...++.+...+. | ..++++||||||+|++|++.+.+++.+.+++.+.+
T Consensus 222 epyR~------~L~P~~~~v~~~a~~~----g-A~g~~lSGAGPTi~al~~~~~~e~~~~~~~~~~~~ 278 (299)
T COG0083 222 EPYRA------KLVPGYAEVREAALEA----G-ALGATLSGAGPTVFALADESDAEKAAALLEELYEQ 278 (299)
T ss_pred hhhhh------hhCccHHHHHHHHhhC----C-ceEEEEecCCCeEEEEeccchhhHHHHHHHHHHHh
Confidence 99884 5678888877555543 5 46789999999999999987556666666666544
No 6
>PTZ00299 homoserine kinase; Provisional
Probab=99.97 E-value=3.1e-29 Score=262.93 Aligned_cols=249 Identities=16% Similarity=0.174 Sum_probs=186.1
Q ss_pred cCCCccceeecCCCceeEEEEEecCCCCccEEEEcCcc---chhhhhhh----------hccC--CccEEEEEEcCCCCc
Q psy11141 102 ELNGIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKK---LAEQEKSS----------REMA--DWKMHICSENNFPTA 166 (566)
Q Consensus 102 P~ndSLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~~---~~~~~~~l----------~~~~--~~~v~I~s~nnIP~a 166 (566)
|+|||||++|+ +|++++|+..+ ..++.++|.. ++.++.++ ..+. ..+++|+++|+||.+
T Consensus 21 pGFDsLGlAL~---lyd~v~v~~~~---~~~i~i~G~~~~~lp~~~~nlv~~a~~~~~~~~~~~~~~g~~i~i~k~IP~~ 94 (336)
T PTZ00299 21 PAYDTLGMALS---IFMELTVEHAD---AFSMTVEGEGSEHISTDEDNMVVQACRLAFEEYAHKSMPPLKFIMHSNIPYG 94 (336)
T ss_pred ccHHHHhhhcc---cCcEEEEEECC---CCEEEEecCCcCCCCCCcchHHHHHHHHHHHHhcCCCCCceEEEEecCCCcc
Confidence 99999999999 89999998644 2457788753 33322111 2332 147999999999999
Q ss_pred cccccchhhHHHHHHHHHHHhCCC-----HHHHHHHHHHccC---CchhhhcCCeEEEEeCCCCCCCCCCCccccccccc
Q psy11141 167 AGLASSAAGYSCLVFTLAYALGLN-----TSEVSHIARQGSG---SACRSMFGGFVRWKTLPEGQQSDGNGDIGRKQCEL 238 (566)
Q Consensus 167 aGLGSSAA~aAAla~Aln~L~gL~-----~eeLs~iAr~GSG---SaarSi~GGfV~w~~~~~G~~~dg~~~~~~~~~~~ 238 (566)
+|||||||++||++.|+|++++++ .+||.++|..++| |+++|+|||+++... . + .++
T Consensus 95 ~GLGSSsA~avA~l~a~n~l~g~~l~~~~~~el~~~A~~~EGHpDNVapal~GG~~~~~~-~-~---~ge---------- 159 (336)
T PTZ00299 95 CGCGSSSAAAVAGFVAGMKLCGLTMETENEEALLQAIAKFEGHPDNAAPAIYGGIQLVYK-K-D---NGR---------- 159 (336)
T ss_pred CCccHHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHhhcCCcccHHHHHhCCEEEEEe-c-C---CCc----------
Confidence 999999999999999999999876 4899999998877 589999999986432 0 1 122
Q ss_pred eeEEEccCCCCCCceEEEEEEECCCCCCCCChHHHhhhccCCchHHHHHhhhccchHHHHHHHHHcCCHHHHHHHHHhch
Q psy11141 239 SNAEQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRTTLTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDS 318 (566)
Q Consensus 239 s~a~~I~~~~~wp~L~ivilVv~~~~K~vsST~~mr~~v~ts~~~~~~v~~~~~~~v~~li~AL~~~D~e~lgel~~~Ds 318 (566)
....+++.+ +++.+++++|+.+.+ .||+.+|+++|+...+++.+.+ .++...++.+|.++|++.+.. + .
T Consensus 160 ~~~~~i~~~---~~~~~vv~iP~~~~~--~sT~~aR~vLP~~v~~~dav~n--~~~~~~lv~al~~~d~~ll~~-~-~-- 228 (336)
T PTZ00299 160 FLTYRVPTP---PNLSVVLFVPHNKMK--ANTHVTRNLIPTSVSLEDAVFN--ISRTSILVLALSTGDLRMLKS-C-S-- 228 (336)
T ss_pred eEEEecCCC---CCeEEEEEECCCCcc--ccHHHHHhhCcccCcHHHHHHh--hhHHHHHHHHHHhCCHHHHHh-c-h--
Confidence 234466432 477778777654311 3789999999888888887764 677888999999999999954 4 3
Q ss_pred hhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCcceEEeecc------------CCHHHHHHHHHh
Q psy11141 319 NQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLE------------NTVPLLLSTLVQ 386 (566)
Q Consensus 319 n~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV~~l~~~------------~~~~~v~~~L~~ 386 (566)
+++|+++|. ..+.|...++++.+.+. | ..++++||||||||++|.+ ++.+++.++|.+
T Consensus 229 D~lhep~R~-----~~liP~~~~v~~~~~~~----G-a~g~~lSGSGPTv~al~~~~~~~~~~~~~~~~~~~~i~~~~~~ 298 (336)
T PTZ00299 229 DKLHEQQRS-----DALFPHFRPCVKAAREA----G-AHYAFLSGAGPSVCALVGGRHGDPLTQPREERKAESVAEAMIK 298 (336)
T ss_pred hcccCcccc-----cccCccHHHHHHHHHHC----C-CeEEEEEchhhhheEEeccccccccccccchhHHHHHHHHHHH
Confidence 379987662 15567777777665443 6 4678999999999999973 225789999998
Q ss_pred hCCCCC
Q psy11141 387 YFPPSS 392 (566)
Q Consensus 387 ~f~~~~ 392 (566)
.|...+
T Consensus 299 ~~~~~~ 304 (336)
T PTZ00299 299 AAEAVG 304 (336)
T ss_pred HHHHcC
Confidence 876543
No 7
>PRK01212 homoserine kinase; Provisional
Probab=99.95 E-value=2.4e-26 Score=236.44 Aligned_cols=244 Identities=19% Similarity=0.153 Sum_probs=175.3
Q ss_pred cCCCccceeecCCCceeEEEEEecCCCC-ccEEEEcCc---cchhh-hhhh----------hccCCccEEEEEEcCCCCc
Q psy11141 102 ELNGIEPIEITFQRMHAKTSVALSPDFT-EDKLWLNGK---KLAEQ-EKSS----------REMADWKMHICSENNFPTA 166 (566)
Q Consensus 102 P~ndSLSltLd~~~lyt~TtV~~s~~~~-~d~i~lnG~---~~~~~-~~~l----------~~~~~~~v~I~s~nnIP~a 166 (566)
|+||+||++|+ +|++.+|+..++.. ..++.+.|. .++.+ ++++ ..+...+++|+++|+||.+
T Consensus 17 ~gfd~lG~al~---~~d~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~Nli~~a~~~~~~~~~~~~~~~I~i~k~IP~~ 93 (301)
T PRK01212 17 PGFDSLGLALS---LYDEVLVGDVVSVEAEFSIEVIGEGADKLPLDPEKNLVYQAALKFLEKLGKPPGLRIELEKNIPLG 93 (301)
T ss_pred cChhhhhcccc---CccEEEEEEccCCCCceEEEEEecCCCcCCCCCccccHHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Confidence 99999999998 99999998543211 122555443 13322 1111 2344467999999999999
Q ss_pred cccccchhhHHHHHHHHHHHhCCC--HHHHHHHHHHccC---CchhhhcCCeEEEEeCCCCCCCCCCCccccccccceeE
Q psy11141 167 AGLASSAAGYSCLVFTLAYALGLN--TSEVSHIARQGSG---SACRSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNA 241 (566)
Q Consensus 167 aGLGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~GSG---SaarSi~GGfV~w~~~~~G~~~dg~~~~~~~~~~~s~a 241 (566)
+|||||||.+||++.|+|++++++ .++|.++|+.+++ ++++++|||++++.. | .++ ..
T Consensus 94 ~GLGssSa~aaA~l~al~~l~~~~l~~~eL~~~a~~~e~~~ddv~~~l~GG~~~~~~---g---~g~-----------~~ 156 (301)
T PRK01212 94 RGLGSSAASIVAGLVAANELAGLPLSKEELLQLATEGEGHPDNVAPALLGGLVLALE---E---NGV-----------IS 156 (301)
T ss_pred CCCcHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHhCCEEEEEE---C---Cce-----------EE
Confidence 999999999999999999999988 8999999999988 789999999987654 3 232 35
Q ss_pred EEccCCCCCCceEEEEEEECCCCCCCCChHHHhhhccCCchHHHHHhhhccchHHHHHHHHHcCCHHHHHHHHHhchhhh
Q psy11141 242 EQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRTTLTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQF 321 (566)
Q Consensus 242 ~~I~~~~~wp~L~ivilVv~~~~K~vsST~~mr~~v~ts~~~~~~v~~~~~~~v~~li~AL~~~D~e~lgel~~~Dsn~L 321 (566)
++++.. +++++++++++. .+ +|..+++.+++...+++.+.+ ..++..++.+|.++|++.+++.+. +.+
T Consensus 157 ~~~~~~---~~~~~vlv~p~~---~~-sT~~a~~~l~~~~~~~~~~~~--~~~~~~l~~al~~~d~~~~~~~~~---~~~ 224 (301)
T PRK01212 157 VKIPVF---DDLKWVVAIPNI---EL-STAEARAVLPKQYSLKDAVFN--SSRAALLVAALYTGDYELAGRAMK---DVL 224 (301)
T ss_pred EEecCC---CCeEEEEEECCC---cC-CHHHHHHhCcCcCCHHHHHHH--HHHHHHHHHHHhhCCHHHHHHHhc---hhh
Confidence 566421 456666655433 23 566666554554344455443 467888999999999999999872 478
Q ss_pred hhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCcceEEeeccCCHHHHHHHHHhhC
Q psy11141 322 HACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLENTVPLLLSTLVQYF 388 (566)
Q Consensus 322 Ha~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV~~l~~~~~~~~v~~~L~~~f 388 (566)
|+.++. .+.|+..++++.+.+ .| ..++.+|||||+||+++++++.+++.+.+++.|
T Consensus 225 ~~~~~~------~~~p~~~~i~~~~~~----~G-a~g~~~SGsGptv~~l~~~~~~~~~~~~l~~~~ 280 (301)
T PRK01212 225 HEPYRA------KLIPGFAEVRQAALE----AG-ALGAGISGAGPTVFALCDKEDAEKVADALQKAF 280 (301)
T ss_pred eHHhHH------hhCCCHHHHHHHHHH----CC-CeEEEEEchhhheeEEeccccHHHHHHHHHHhh
Confidence 877642 234666666655544 26 457889999999999998766678888888775
No 8
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=99.95 E-value=8.6e-26 Score=233.27 Aligned_cols=242 Identities=15% Similarity=0.124 Sum_probs=169.5
Q ss_pred cCCCccceeecCCCceeEEEEEe----cCCCCccEEEEcCcc---chhh-hhhh----------hccCC-ccEEEEEEcC
Q psy11141 102 ELNGIEPIEITFQRMHAKTSVAL----SPDFTEDKLWLNGKK---LAEQ-EKSS----------REMAD-WKMHICSENN 162 (566)
Q Consensus 102 P~ndSLSltLd~~~lyt~TtV~~----s~~~~~d~i~lnG~~---~~~~-~~~l----------~~~~~-~~v~I~s~nn 162 (566)
|+||||||+|+ +|++++++. ... ..++.+.|.. ++.+ ++++ ..+.. .+++|+++++
T Consensus 14 ~GfD~lg~al~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~Nlv~~a~~~~~~~~g~~~~g~~i~i~~~ 88 (302)
T TIGR00191 14 PGFDVLGAALS---LYLGLTVTDVVAQESD--DTEIEAEGEGVEKIPTEPTDNLIYQVAKRFLDQLGIRMPPVKVTLEKN 88 (302)
T ss_pred cChhhhhhhcc---ccceEEEEeeecccCC--CceEEEEecccccCCCCcccccHHHHHHHHHHHcCCCCCCEEEEEEcC
Confidence 99999999999 899998874 221 1246565432 3333 2221 23444 5799999999
Q ss_pred CCCccccccchhhHHHHHHHHHHHhCCC--HHHHHHHHHHccC---CchhhhcCCeEEEEeCCCCCCCCCCCcccccccc
Q psy11141 163 FPTAAGLASSAAGYSCLVFTLAYALGLN--TSEVSHIARQGSG---SACRSMFGGFVRWKTLPEGQQSDGNGDIGRKQCE 237 (566)
Q Consensus 163 IP~aaGLGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~GSG---SaarSi~GGfV~w~~~~~G~~~dg~~~~~~~~~~ 237 (566)
||.++|||||||.++|++.|+|++++++ .++|.++|..+++ ++++++|||++++.. . ++.
T Consensus 89 IP~~~GLGSSsa~~vA~l~a~~~l~~~~l~~~el~~~a~~~E~h~Dnv~~~l~GG~~~~~~---~----~~~-------- 153 (302)
T TIGR00191 89 IPLGRGLGSSAAAIVAALAAANELCGLPLSKERLLDYASELEGHPDNVAPALLGGFQLAFV---E----DDK-------- 153 (302)
T ss_pred CCCcCCCChHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhcCCcccHHHHhccCEEEEEE---c----CCc--------
Confidence 9999999999999999999999999988 8999999998886 489999999987653 1 221
Q ss_pred ceeEEEccCCCCCCceEEEEEEECCCCCCCCChHHHhhhccCCchHHHHHhhhccchHHHHHHHHHcCCHHHHHHHHHhc
Q psy11141 238 LSNAEQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRTTLTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKD 317 (566)
Q Consensus 238 ~s~a~~I~~~~~wp~L~ivilVv~~~~K~vsST~~mr~~v~ts~~~~~~v~~~~~~~v~~li~AL~~~D~e~lgel~~~D 317 (566)
....+++. .+++.+++++++.+ + ||..+++.++....+.+.+.+ ..++..++.+|.++|++. ++.+++
T Consensus 154 -~~~~~~~~---~~~~~~vl~~p~~~---~-sT~~a~~~lp~~~~~~~~v~~--~~~~~~l~~al~~~~~~l-~~~~~~- 221 (302)
T TIGR00191 154 -LEVLKIPI---FSKLDWVLAIPNIE---V-STAEARAVLPKAYPRQDLVFN--LSHLAGLVHAIYQKKPDL-GAIMMK- 221 (302)
T ss_pred -eEEEEeCC---CCCEEEEEEECCCc---c-cHHHHHHhCcccCCHHHHHHH--HHHHHHHHHHHHcCCHHH-HHHHcc-
Confidence 12233321 14677777665433 3 777777766654444454443 456778899999998764 556655
Q ss_pred hhhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCcceEEeeccCCH-HHHHHHHHhh
Q psy11141 318 SNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLENTV-PLLLSTLVQY 387 (566)
Q Consensus 318 sn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV~~l~~~~~~-~~v~~~L~~~ 387 (566)
+++|+.++. .+.|...++++.+.+ .| ..++.+|||||+|+++|++++. +.+.+.++..
T Consensus 222 -d~l~e~~~~------~l~p~l~~i~~~~~~----~G-a~g~~lSGsGptv~al~~~~~~~~~~~~~~~~~ 280 (302)
T TIGR00191 222 -DRIHQPYRE------SLIPNLFKIKQAALE----KG-AYGITISGSGPTILAMADEEFAEQKEQDLLEVL 280 (302)
T ss_pred -cccchhhHh------hhCCCHHHHHHHHHH----CC-CeEEEEEchhhhheEEecchhhHHHHHHHHHHH
Confidence 478988773 335666666655544 26 4678999999999999986653 4455555554
No 9
>PLN02451 homoserine kinase
Probab=99.93 E-value=1.1e-24 Score=231.51 Aligned_cols=252 Identities=13% Similarity=0.126 Sum_probs=175.8
Q ss_pred cc-cCCCccceeecCCCceeEEEEEecCC--CCccEEE-EcCc--cchhh-hhhh----------hccCC-ccEEEEEEc
Q psy11141 100 KS-ELNGIEPIEITFQRMHAKTSVALSPD--FTEDKLW-LNGK--KLAEQ-EKSS----------REMAD-WKMHICSEN 161 (566)
Q Consensus 100 ~l-P~ndSLSltLd~~~lyt~TtV~~s~~--~~~d~i~-lnG~--~~~~~-~~~l----------~~~~~-~~v~I~s~n 161 (566)
|| |++|++|+++| .+|++++|+..++ ..+-+|. +.|. .++.+ ++|+ ..+.. .+++|++++
T Consensus 64 NLGpgfD~lG~a~d--~l~d~v~~~~~~~~~~~~~~i~~~~g~~~~l~~~~~~Nlv~~a~~~~~~~~g~~~~gv~I~i~k 141 (370)
T PLN02451 64 NLGPGFDFLGCAVD--GLGDFVTARVDPGVRPGEVSISEITGDTGRLSKDPLRNCAGIAAIATMKLLGIRSVGLSLSLHK 141 (370)
T ss_pred hcccChhhhhhhhc--cCcCEEEEEECCCCCcccEEEEEeccccccCCCCcccCcHHHHHHHHHHHcCCCCCCEEEEEeC
Confidence 55 99999999999 7999999997542 0112333 2233 23333 2222 23433 589999999
Q ss_pred CCCCccccccchhhHHHHHHHHHHHhCCC--HHHHHHHHHHccC--------CchhhhcCCeEEEEeCCCCCCCCCCCcc
Q psy11141 162 NFPTAAGLASSAAGYSCLVFTLAYALGLN--TSEVSHIARQGSG--------SACRSMFGGFVRWKTLPEGQQSDGNGDI 231 (566)
Q Consensus 162 nIP~aaGLGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~GSG--------SaarSi~GGfV~w~~~~~G~~~dg~~~~ 231 (566)
+||+++|||||||.+||++.|+|+++|++ ++||.++|...++ ++++|++||+++.. +. +..
T Consensus 142 ~IP~g~GLGSSaA~avA~l~aln~l~g~~ls~~eL~~la~~~E~~v~g~h~Dnva~a~~GG~v~~~----~~--~~~--- 212 (370)
T PLN02451 142 GLPLGSGLGSSAASAAAAAVAVNELFGSPLGKDDLVLAGLESEAKVSGYHADNIAPALMGGFVLIR----SY--EPL--- 212 (370)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhchhcCCCccchhHhhcCCEEEEE----ec--CCC---
Confidence 99999999999999999999999999988 8999999987655 35688999998653 22 111
Q ss_pred ccccccceeEEEccCCCCCCceEEEEEEECCCCCCCCChHHHhhhccCCchHHHHHhhhccchHHHHHHHHHcCCHHHHH
Q psy11141 232 GRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRTTLTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFA 311 (566)
Q Consensus 232 ~~~~~~~s~a~~I~~~~~wp~L~ivilVv~~~~K~vsST~~mr~~v~ts~~~~~~v~~~~~~~v~~li~AL~~~D~e~lg 311 (566)
...+++.+. -+++.+++++++.+ .+|+.+++.++....+.+.+.+ ..++..++.+|.++|++.++
T Consensus 213 --------~~~~~~~p~-~~~~~~Vlv~P~~~----~sT~~ar~~lp~~~~~~~~v~~--~~~~~~l~~al~~~d~~~l~ 277 (370)
T PLN02451 213 --------HLIPLRFPS-AKDLFFVLVSPDFE----APTKKMRAALPKEIPMKHHVWN--CSQAAALVAAILQGDAVLLG 277 (370)
T ss_pred --------eEEEeecCC-CCCeEEEEEcCCCC----ccHHHHHHHHhhhcchhhHHHH--HHHHHHHHHHHHcCCHHHHH
Confidence 123332110 13566665555433 3788888766544333444432 34678899999999999999
Q ss_pred HHHHhchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCcceEEeecc-CCHHHHHHHHHhhCCC
Q psy11141 312 ELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLE-NTVPLLLSTLVQYFPP 390 (566)
Q Consensus 312 el~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV~~l~~~-~~~~~v~~~L~~~f~~ 390 (566)
+.|.+| ++|+.++ ..+.|+..++++.+.+. | ..++.+|||||++|++++. ++.+++.++|++.|..
T Consensus 278 ~~m~nD--~~~e~~r------~~~~P~l~~l~~~~~~~----G-A~ga~mSGSGptvfal~~~~~~a~~i~~~l~~~~~~ 344 (370)
T PLN02451 278 EALSSD--KIVEPTR------APLIPGMEAVKKAALEA----G-AYGCTISGAGPTAVAVIDDEEKGEEVGERMVEAFRK 344 (370)
T ss_pred HHHHHH--HHhHHHH------hhhCccHHHHHHHHHHC----C-CeEEEEEccchheEEEEcCHHHHHHHHHHHHHHHHH
Confidence 987643 6777655 34566667776655442 6 4678899999999999975 4578899999887754
No 10
>TIGR00144 beta_RFAP_syn beta-RFAP synthase. This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis. In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens.
Probab=99.89 E-value=1.6e-21 Score=204.01 Aligned_cols=248 Identities=15% Similarity=0.147 Sum_probs=162.4
Q ss_pred CCCccceeecCCCceeEEEEEecCCCCccEEEEcCcc---chh--h-h-------hhh-hccCCccEEEEEEcCCCCccc
Q psy11141 103 LNGIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKK---LAE--Q-E-------KSS-REMADWKMHICSENNFPTAAG 168 (566)
Q Consensus 103 ~ndSLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~~---~~~--~-~-------~~l-~~~~~~~v~I~s~nnIP~aaG 168 (566)
.|.++|++|+ .++++++|+.+++ .++.+++.. ++. . + ..+ ..+. .+++|+++++||.++|
T Consensus 23 ~~Gg~G~al~--~~~~~v~v~~~~~---~~v~~~~~~g~~l~~~~~~n~~~~~~~~~~~~~g~-~~~~i~i~~~IP~~~G 96 (324)
T TIGR00144 23 VDGGVGLALE--EPEIVIGLKESDD---MGVEFTSHAEGKLGEEYRRSRIMEAARKTLKHIGS-EGFHFTVRSMFPAHSG 96 (324)
T ss_pred cccceEEEEe--CCcEEEEEEECCC---ceEEecccccccccchhHHHHHHHHHHHHHHHhCC-CCEEEEEeecCCCccC
Confidence 4789999999 7999999987653 455554321 111 1 1 111 1333 5799999999999999
Q ss_pred cccchhhHHHHHHHHHHHhCCC--HHHHHHHHHHccC---CchhhhcCCeEEEEeCCCCCC-CCCCCcccc---ccccce
Q psy11141 169 LASSAAGYSCLVFTLAYALGLN--TSEVSHIARQGSG---SACRSMFGGFVRWKTLPEGQQ-SDGNGDIGR---KQCELS 239 (566)
Q Consensus 169 LGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~GSG---SaarSi~GGfV~w~~~~~G~~-~dg~~~~~~---~~~~~s 239 (566)
||||||.++|++.|+|++++++ .+||.++|.+|++ ++++|++|||++. . |.. .+..+++.. ...-..
T Consensus 97 LGSsaa~avA~~~a~~~l~~~~ls~~el~~~a~~ge~s~~~va~~~~GG~vv~-~---G~~~~~~~~~~~~~~~~~~~~~ 172 (324)
T TIGR00144 97 LGSGTQLSLAVGRLVSEYYGMKFTAREIAHIVGRGGTSGIGVASFEDGGFIVD-G---GHSSKEKSDFLPSSASSAKPAP 172 (324)
T ss_pred ccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCCCCccceeeeeeCCEEEE-C---CcccccccccCcccccCCCCCC
Confidence 9999999999999999999988 8999999999877 6799999999764 2 210 001110000 000002
Q ss_pred eEEEccCCCCCCceEEEEEEECCCCCCCCChHHHhhh--ccCC--chHHHHHhhhccchHHH--HHHHHHcCCHHHHHHH
Q psy11141 240 NAEQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRT--TLTS--TLYEHRVNTIVPSRCSG--MEEALRARDFPRFAEL 313 (566)
Q Consensus 240 ~a~~I~~~~~wp~L~ivilVv~~~~K~vsST~~mr~~--v~ts--~~~~~~v~~~~~~~v~~--li~AL~~~D~e~lgel 313 (566)
...+++ .|++++++++|+.+ +|..+|+. +++. ..+++ +.+ ..++.. |+.||.++|++.|++.
T Consensus 173 ~~~r~~----~p~~~~vlviP~~~-----~t~~are~~~lp~~~~i~~~d-v~~--~~~~~l~~l~~al~~~d~~~~~~~ 240 (324)
T TIGR00144 173 VIARYD----FPDWNIILAIPEID-----SVSGRREVNIFQKYCPVPLRD-VER--ICHLILMKMMPAVVEGDLDAFGES 240 (324)
T ss_pred eEEecC----CCCcEEEEEecCCC-----CCCcHHHHHHHHhcCCCCHHH-HHH--HHHHHHHHHHHHHHhcCHHHHHHH
Confidence 244554 26778888876543 34444442 3443 34555 444 345544 5999999999999998
Q ss_pred HHhchh-----hhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCcceEEeeccCCHHHHHHHHHhhC
Q psy11141 314 TMKDSN-----QFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLENTVPLLLSTLVQYF 388 (566)
Q Consensus 314 ~~~Dsn-----~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV~~l~~~~~~~~v~~~L~~~f 388 (566)
|+ |-. .+|+.++. +....+ ++.+... .++.+||+|||||++|+++ .+++.+++.+.|
T Consensus 241 l~-d~~~~~f~~~~~~~r~---------~li~~~---~~~l~~a----~g~~iSGsGPTv~al~~~~-~~~~~~~~~~~~ 302 (324)
T TIGR00144 241 VN-EIQGLGFKKIERELQD---------PLIKRI---IDSMISA----PGAGMSSFGPTVYAVTDEK-PGNIAGAVADIF 302 (324)
T ss_pred HH-HHHhhcchhhhccccC---------HHHHHH---HHHHHhc----cCceecCCCCeEEEEecCc-hHHHHHHHHHHh
Confidence 74 432 36655441 222232 3333322 3478899999999999764 667888888876
Q ss_pred CC
Q psy11141 389 PP 390 (566)
Q Consensus 389 ~~ 390 (566)
..
T Consensus 303 ~~ 304 (324)
T TIGR00144 303 GP 304 (324)
T ss_pred hh
Confidence 54
No 11
>KOG2833|consensus
Probab=99.89 E-value=1.2e-23 Score=213.74 Aligned_cols=101 Identities=39% Similarity=0.597 Sum_probs=87.1
Q ss_pred CCCc-hhhHHHHHHcCCCChHHHHHHHhhccccccccccCCeEEeecCCCCCCCCCCCCccccccCCceeEecCCCCCcc
Q psy11141 451 AGAP-KHLMFTLAYALGLNTSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSEGNGDIGRKQFELSNAEQIISESYWG 529 (566)
Q Consensus 451 ~Glp-~ala~~~~~~~~~~~~~~s~~ar~gsgsa~rs~~g~~~~w~~~~~g~~~~~~~~~~~~~~~d~~a~~~~~~~~~~ 529 (566)
.|+. .+++.+..|+++.+++|||++||+||||||||+|||||.|.+ |+..||+ ||.|+|+++.+|||
T Consensus 125 AG~Aalv~alarly~l~~~~~els~iAR~GSGSACRSl~GG~V~W~m---G~~~DGs---------DsvAvq~~p~~~W~ 192 (395)
T KOG2833|consen 125 AGFAALVLALARLYGLDDSPEELSRIARQGSGSACRSLYGGFVAWEM---GELDDGS---------DSVAVQIAPSSHWP 192 (395)
T ss_pred hhHHHHHHHHHHHhCCCCCHHHHHHHHhccCchhhhhhhcceeEeec---ccccCCC---------ceeEEEeccccCCC
Confidence 4443 344666779999999999999999999999999999999999 9988886 78999999999999
Q ss_pred ceeeEEEEecCCCCccc--------ccchhhHh--hcCCCccCc
Q psy11141 530 SMRVIILVHLEYVPRVS--------NDTTILFK--KLGVPRLNY 563 (566)
Q Consensus 530 ~~~~~i~v~~~~~k~vs--------~~~~~~~~--~~~~~~~~~ 563 (566)
+|+++|+|+++.+|+++ ++||.||+ -..|++.|+
T Consensus 193 el~ililVvs~~~K~t~ST~GM~~sveTS~L~qhRi~~vVP~Ri 236 (395)
T KOG2833|consen 193 ELRILILVVSDAKKKTGSTEGMRRSVETSQLLQHRIESVVPQRI 236 (395)
T ss_pred ceEEEEEEeccccccccccHHHHHHHHHhHHHHHHHHhhhHHHH
Confidence 99999999999999885 99999965 456555443
No 12
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.89 E-value=1.6e-21 Score=201.17 Aligned_cols=234 Identities=16% Similarity=0.192 Sum_probs=159.3
Q ss_pred CCccceeecCCCceeEEEEEecCCCCccEEEEcCcc---chhhhhh---------h-hccCCccEEEEEEcCCCCccccc
Q psy11141 104 NGIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKK---LAEQEKS---------S-REMADWKMHICSENNFPTAAGLA 170 (566)
Q Consensus 104 ndSLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~~---~~~~~~~---------l-~~~~~~~v~I~s~nnIP~aaGLG 170 (566)
-+|+.++++ +|++++++.++ +.++.++|.. .+..+.+ + ..+...+++|+++++||+++|||
T Consensus 26 l~s~~~ai~---l~d~v~i~~~~---~~~i~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~I~i~s~IP~~~GLG 99 (300)
T PRK03188 26 LATVFQAVS---LYDEVTVTAAD---VLSVEVSGEGADQVPTDESNLAWRAAELLAEHVGRAPDVHLHIDKGIPVAGGMA 99 (300)
T ss_pred hHhhheehh---hccEEEEEECC---CcEEEEecCCccCCCCCCccHHHHHHHHHHHHhCCCCCeEEEEEcCCcccCcch
Confidence 469999999 89999998654 3457776642 2222211 1 23445689999999999999999
Q ss_pred cchhhHHHHHHHHHHHhCCC--HHHHHHHHHHccCCchhhhcCCeEEEEeCCCCCCCCCCCccccccccceeEEEccCCC
Q psy11141 171 SSAAGYSCLVFTLAYALGLN--TSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISES 248 (566)
Q Consensus 171 SSAA~aAAla~Aln~L~gL~--~eeLs~iAr~GSGSaarSi~GGfV~w~~~~~G~~~dg~~~~~~~~~~~s~a~~I~~~~ 248 (566)
||||++||++.|+++++|++ .++|.++|.+++.+++++++||+++. . + .++. ..++...
T Consensus 100 SSSA~a~A~l~al~~~~g~~ls~~el~~~a~~ig~dv~~~~~GG~~~~-~---~---~g~~-----------~~~~~~~- 160 (300)
T PRK03188 100 GGSADAAAALVACDALWGLGLSRDELLELAAELGSDVPFALLGGTALG-T---G---RGEQ-----------LAPVLAR- 160 (300)
T ss_pred HHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchhhcCCeEEE-E---e---cCCE-----------EEECCCC-
Confidence 99999999999999999988 89999999988889999999999754 3 3 2332 3444321
Q ss_pred CCCceEEEEEEECCCCCCCCChHHHhhhccCCchHHHHHhhhccchHHHHHHHHHcCCHHHHHHHHHhchhhhhhccccc
Q psy11141 249 YWGSMRVIILVVNDQAKSTSSTDGMQRTTLTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDT 328 (566)
Q Consensus 249 ~wp~L~ivilVv~~~~K~vsST~~mr~~v~ts~~~~~~v~~~~~~~v~~li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~ 328 (566)
+++.+++++++. .+ +|..+++.++..... ..+. ....+..++.++.++|++.+++.|.+| ++....
T Consensus 161 --~~~~~~lv~p~~---~~-sT~~~~~~l~~~~~~-~~~~--~~~~~~~~~~al~~~d~~~l~~~~~n~---le~~~~-- 226 (300)
T PRK03188 161 --GTFHWVLAFADG---GL-STPAVFRELDRLREA-GDPP--RLGEPDPLLAALRAGDPAQLAPLLGND---LQAAAL-- 226 (300)
T ss_pred --CCcEEEEEeCCC---CC-CHHHHHHhchhhhcc-cccc--ccccHHHHHHHHHcCCHHHHHHHhhCc---CHHHHH--
Confidence 345555555433 34 555554433321111 1112 244688899999999999999987532 322222
Q ss_pred CCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCcceEEeeccC-CHHHHHHHHHh
Q psy11141 329 YPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLEN-TVPLLLSTLVQ 386 (566)
Q Consensus 329 ~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV~~l~~~~-~~~~v~~~L~~ 386 (566)
.+.|+..++++.+.+. | ..++.+||+||+++++++.+ +.+++.+.+.+
T Consensus 227 -----~~~p~l~~l~~~~~~~----G-alga~lSGsG~tv~~l~~~~~~~~~~~~~l~~ 275 (300)
T PRK03188 227 -----SLRPSLRRTLRAGEEA----G-ALAGIVSGSGPTCAFLCADADSAVDVAAALSG 275 (300)
T ss_pred -----HhCchHHHHHHHHHHC----C-CCEEEEEccccceEEEeCCHHHHHHHHHHHHh
Confidence 2345556666554442 6 46788999999999999753 35667777765
No 13
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.88 E-value=1.8e-21 Score=198.96 Aligned_cols=222 Identities=18% Similarity=0.191 Sum_probs=151.5
Q ss_pred ccceeecCCCceeEEEEEecCCCCccEEEEcCccchhhh----h---hh--hccCCccEEEEEEcCCCCccccccchhhH
Q psy11141 106 IEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKKLAEQE----K---SS--REMADWKMHICSENNFPTAAGLASSAAGY 176 (566)
Q Consensus 106 SLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~~~~~~~----~---~l--~~~~~~~v~I~s~nnIP~aaGLGSSAA~a 176 (566)
|+=.+++ +|++++++..+ ..++..++..++.+. + .+ ..+...+++|+++|+||+++|||||||++
T Consensus 29 s~~~ai~---l~d~v~i~~~~---~~~i~~~~~~~~~~~n~v~~a~~~~~~~~g~~~~~~i~i~k~IP~~~GLGSSsA~a 102 (275)
T PRK14611 29 TIYHTID---LYDRIYIKEHH---TLEVKTSSPQIKEEENIVYKALRLFERYTGIDINYSIFIEKNIPVGAGLGGGSSNA 102 (275)
T ss_pred heeEecc---CCcEEEEEECC---cEEEEeCCCCCCCcccHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCccHHHHHH
Confidence 4445666 89999997543 235555553322211 1 01 13455689999999999999999999999
Q ss_pred HHHHHHHHHHhCCC--HHHHHHHHHHccCCchhhhcCCeEEEEeCCCCCCCCCCCccccccccceeEEEccCCCCCCceE
Q psy11141 177 SCLVFTLAYALGLN--TSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMR 254 (566)
Q Consensus 177 AAla~Aln~L~gL~--~eeLs~iAr~GSGSaarSi~GGfV~w~~~~~G~~~dg~~~~~~~~~~~s~a~~I~~~~~wp~L~ 254 (566)
||++.|++++++++ .++|.++|+.+++|++++++||++.+. |. |+. ..+++.. ++..
T Consensus 103 aA~l~al~~~~~~~l~~~~l~~la~~i~~D~~~~~~Gg~~~~~----~~---g~~-----------~~~~~~~---~~~~ 161 (275)
T PRK14611 103 AVVLKYLNELLGNPLSEEELFELASSISADAPFFLKGGFALGR----GI---GDK-----------LEFLEKP---ISRE 161 (275)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCeeecCCeEEEe----cc---Cce-----------eEECCcC---CCcE
Confidence 99999999999988 899999999999999999999998654 42 321 3444321 2334
Q ss_pred EEEEEECCCCCCCCChHHHhhhccCCchHHHHHhhhccchHHHHHHHHHcCCHHHHHHHHHhchhhhhhcccccCCCcee
Q psy11141 255 VIILVVNDQAKSTSSTDGMQRTTLTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVY 334 (566)
Q Consensus 255 ivilVv~~~~K~vsST~~mr~~v~ts~~~~~~v~~~~~~~v~~li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P~i~y 334 (566)
+++++++.. .+|..+++.++.. ... +.+++..+++++.++|++.+...++ |.||++++..+|
T Consensus 162 ~vv~~p~~~----~sT~~~~~~l~~~-----~~~--~~~~~~~l~~~l~~~~~~~~~~~~~---n~l~~~~~~~~P---- 223 (275)
T PRK14611 162 ITLVYPNIK----SSTGRVYSKVTKQ-----ILT--NKEDLNIIISLLREGEEKKIEEVIE---NTLGEIALELYP---- 223 (275)
T ss_pred EEEEeCCCC----CChHHHHHhcchh-----hcc--CcchHHHHHHHHHcCCHHHHHHhcC---CcccHHHHHHCH----
Confidence 555544332 3666666544321 122 4567888999999999999987764 579999875554
Q ss_pred ccccHHHHHHHHHHHHHhhCCceEEEEeCCCcceEEeeccCCHHHHHHH
Q psy11141 335 MNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLENTVPLLLST 383 (566)
Q Consensus 335 l~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV~~l~~~~~~~~v~~~ 383 (566)
+..++.+.++. .| . ++.+|||||++|+++. +.+++.+.
T Consensus 224 ---~l~~~~~~l~~----~~-~-~~~~SGSG~tvf~l~~--~~~~~~~~ 261 (275)
T PRK14611 224 ---EIKEVYRFLEY----LG-Y-KPFVSGSGSSVYVFGK--PSEEVKKA 261 (275)
T ss_pred ---HHHHHHHHHHh----CC-C-CEEEeCccccceeEeC--CHHHHHHH
Confidence 44455543322 13 2 5779999999999983 34444443
No 14
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.88 E-value=3e-21 Score=200.39 Aligned_cols=248 Identities=16% Similarity=0.161 Sum_probs=161.4
Q ss_pred ccCCCccceeecCCCceeEEEEEecCCCCccEEEEcCc--cchhhhhh---------h-hccCC-ccEEEEEEcCCCCcc
Q psy11141 101 SELNGIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGK--KLAEQEKS---------S-REMAD-WKMHICSENNFPTAA 167 (566)
Q Consensus 101 lP~ndSLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~--~~~~~~~~---------l-~~~~~-~~v~I~s~nnIP~aa 167 (566)
.++++.+++.+..=++|++++|+..++ +.+.+... .++.++.+ + ..+.. .+++|+++++||.++
T Consensus 23 ~dGy~~l~~~~~~i~l~d~v~v~~~~~---~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~i~i~~~IP~~~ 99 (312)
T PRK02534 23 PDGFHELAMVMQSIDLADRLELRNNGD---GTIRLHCDHPQLSTDDDNLIYRAAQLLRKRFPFAEGGVDITLEKRIPIGA 99 (312)
T ss_pred CCCCCceEEEEEECCCCCEEEEEECCC---CcEEEEECCCCCCCCchhHHHHHHHHHHHHhCCCCCCeEEEEecCCCCcC
Confidence 367999998744223899999986542 33443221 12222111 1 23443 579999999999999
Q ss_pred ccccchhhHHHHHHHHHHHhCCC--HHHHHHHHHHccCCchhhhcCCeEEEEeCCCCCCCCCCCccccccccceeEEEcc
Q psy11141 168 GLASSAAGYSCLVFTLAYALGLN--TSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQII 245 (566)
Q Consensus 168 GLGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~GSGSaarSi~GGfV~w~~~~~G~~~dg~~~~~~~~~~~s~a~~I~ 245 (566)
|||||||.+||++.|++++++++ .++|.++|...+++++++++||++++. | .++ ...++.
T Consensus 100 GLGSssa~~~A~~~al~~~~~~~l~~~~l~~~a~~~g~dv~~~~~GG~~~~~----~---~g~-----------~~~~~~ 161 (312)
T PRK02534 100 GLAGGSTDAAAVLVGLNLLWGLGLTQPELESLAAELGSDVPFCIAGGTQLCF----G---RGE-----------ILEPLP 161 (312)
T ss_pred CccHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCcEEeECCeEEEE----C---CCC-----------EeEECC
Confidence 99999999999999999999987 899999998888899999999998654 3 232 145554
Q ss_pred CCCCCCceEEEEEEECCCCCCCCChHHH----hhhccCCchHHHH-Hhhh-ccchHHHHHHHHHcCCHHHHHHHHHhchh
Q psy11141 246 SESYWGSMRVIILVVNDQAKSTSSTDGM----QRTTLTSTLYEHR-VNTI-VPSRCSGMEEALRARDFPRFAELTMKDSN 319 (566)
Q Consensus 246 ~~~~wp~L~ivilVv~~~~K~vsST~~m----r~~v~ts~~~~~~-v~~~-~~~~v~~li~AL~~~D~e~lgel~~~Dsn 319 (566)
.+ +++.+++++++.. .+ +|..+ +..+++....++. .+.+ +..+...++.+|.++|++.+++.+
T Consensus 162 ~~---~~~~~vv~~~p~~--~~-~T~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~d~~~~~~~~----- 230 (312)
T PRK02534 162 DL---DGLGVVLAKYPSL--SV-STPWAYKTYRQQFGDTYLSDEEDFEQRRQALRSGPLLQAISAKDPPPIAQLL----- 230 (312)
T ss_pred CC---CCcEEEEEECCCC--Cc-cHHHHHHHHhhhcccccccCcccccccccccchhHHHHhhhccCHHHHHHhh-----
Confidence 22 3555554432322 24 56555 3333322211111 1100 234567789999999999997754
Q ss_pred hhhhcccccCCCceeccccHHHHHHHHHHHH-HhhCCceEEEEeCCCcceEEeeccC-CHHHHHHHHHhhCCC
Q psy11141 320 QFHACCLDTYPPIVYMNDTSHSIVRFVHEFN-TVVGETKVAYTFDAGPNACLYVLEN-TVPLLLSTLVQYFPP 390 (566)
Q Consensus 320 ~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~-~~~G~~~~a~tsGAGPnV~~l~~~~-~~~~v~~~L~~~f~~ 390 (566)
|+.++. ...|...++.+.++.++ +. | ..++.+||+|||||++++++ +.+++.+.+++.+..
T Consensus 231 --~n~l~~------~~~~~~~~i~~~~~~l~~~~-G-a~~~~lSGsGptv~~l~~~~~~a~~~~~~l~~~~~~ 293 (312)
T PRK02534 231 --HNDLEK------VVLPEYPQVAKLLELLSSLP-G-CLGTMMSGSGPTCFALFESQEQAEQALEQVREAFAD 293 (312)
T ss_pred --hCchHH------HhHhcChHHHHHHHHHHhcc-C-CCeeEEECcCcceEEEeCCHHHHHHHHHHHHHHhcc
Confidence 333221 11234556666666665 44 7 46788999999999999764 567788888876653
No 15
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.86 E-value=1.3e-20 Score=192.76 Aligned_cols=230 Identities=16% Similarity=0.182 Sum_probs=155.7
Q ss_pred CccceeecCCCceeEEEEEecCCCCccEEEEcCc--cchhhhhh---------h-hccCCccEEEEEEcCCCCccccccc
Q psy11141 105 GIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGK--KLAEQEKS---------S-REMADWKMHICSENNFPTAAGLASS 172 (566)
Q Consensus 105 dSLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~--~~~~~~~~---------l-~~~~~~~v~I~s~nnIP~aaGLGSS 172 (566)
.||.++++ +|++++|+..++ +.+.+... ..+.++.+ . ..+...+++|+++++||.++|||||
T Consensus 29 ~si~~ai~---l~~~v~v~~~~~---~~~~i~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~i~i~~~iP~~~GLGSS 102 (286)
T PRK00128 29 EMIMQTID---LADRLEIEKLKE---DGIVVESNNRYVPNDERNLAYKAAKLLKERYNIKQGVSITIDKNIPVAAGLAGG 102 (286)
T ss_pred heeeEecC---CCcEEEEEECCC---CCEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCCCCeEEEEEcCCCccccchHH
Confidence 79999998 899999986542 22333321 11111111 1 1344457999999999999999999
Q ss_pred hhhHHHHHHHHHHHhCCC--HHHHHHHHHHccCCchhhhcCCeEEEEeCCCCCCCCCCCccccccccceeEEEccCCCCC
Q psy11141 173 AAGYSCLVFTLAYALGLN--TSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYW 250 (566)
Q Consensus 173 AA~aAAla~Aln~L~gL~--~eeLs~iAr~GSGSaarSi~GGfV~w~~~~~G~~~dg~~~~~~~~~~~s~a~~I~~~~~w 250 (566)
||.+||++.|++++++++ .+||.++|...+++++++++||++.. . +. ++. ..+++. .
T Consensus 103 sa~a~a~~~al~~~~~~~l~~~~l~~~a~~~g~dv~~~~~Gg~~~~-~---~~---g~~-----------~~~~~~---~ 161 (286)
T PRK00128 103 SSDAAATLRGLNKLWNLGLSLEELAEIGLEIGSDVPFCIYGGTALA-T---GR---GEK-----------ITPLKS---P 161 (286)
T ss_pred HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCCCCCeEeeCCeEEE-e---cC---Ccc-----------cccCCC---C
Confidence 999999999999999987 89999999988889999999999754 3 32 321 334432 1
Q ss_pred CceEEEEEEECCCCCCCCChHHHhhhccCCchHHHHHhhhccchHHHHHHHHHcCCHHHHHHHHHhchhhhhhcccccCC
Q psy11141 251 GSMRVIILVVNDQAKSTSSTDGMQRTTLTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYP 330 (566)
Q Consensus 251 p~L~ivilVv~~~~K~vsST~~mr~~v~ts~~~~~~v~~~~~~~v~~li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P 330 (566)
+++.++++.++. .+ +|..+++.++.. +. ....+..++.++.++|++.+++.|. |.|+......
T Consensus 162 ~~~~~vv~~p~~---~~-~T~~~~~~~~~~-----~~---~~~~~~~~~~~l~~~d~~~~~~~~~---n~l~~~~~~~-- 224 (286)
T PRK00128 162 PSCWVVLAKPDI---GV-STKDVYKNLDLD-----KI---SHPDTEKLIEAIEEGDYQGICANMG---NVLENVTLKK-- 224 (286)
T ss_pred CCcEEEEEcCCC---CC-CHHHHHhcCccc-----cc---cCcchHHHHHHHhcCCHHHHHHhcc---CcHHHHHHhh--
Confidence 456555554432 33 566665433211 11 1345788999999999999998763 3454433322
Q ss_pred CceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCcceEEeeccC-CHHHHHHHHHhhC
Q psy11141 331 PIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLEN-TVPLLLSTLVQYF 388 (566)
Q Consensus 331 ~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV~~l~~~~-~~~~v~~~L~~~f 388 (566)
.|+..++++.+.+ . | ..++.+|||||++++++..+ +.+++.+.+++.+
T Consensus 225 -----~p~l~~l~~~~~~---~-G-a~g~~lSGsG~sv~~l~~~~~~~~~i~~~l~~~~ 273 (286)
T PRK00128 225 -----YPEIAKIKERMLK---F-G-ADGALMSGSGPTVFGLFDDESRAQRIYNGLKGFC 273 (286)
T ss_pred -----ChHHHHHHHHHHh---c-C-CCeeEEcccCccEEEEeCCHHHHHHHHHHhHhhc
Confidence 3444455544433 3 6 45789999999999999763 4677888887654
No 16
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.86 E-value=8.9e-21 Score=193.79 Aligned_cols=228 Identities=13% Similarity=0.124 Sum_probs=152.8
Q ss_pred CCCccceeecCCCceeEEEEEecCCCCccEEEEcCccchhhhhh---------h-hccCCccEEEEEEcCCCCccccccc
Q psy11141 103 LNGIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKKLAEQEKS---------S-REMADWKMHICSENNFPTAAGLASS 172 (566)
Q Consensus 103 ~ndSLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~~~~~~~~~---------l-~~~~~~~v~I~s~nnIP~aaGLGSS 172 (566)
.-||++++++ +|++++|+..++ ..++..++..++.++.+ + ..+...+++|+++++||+++|||||
T Consensus 27 ~l~sl~~al~---l~d~v~i~~~~~--~~~i~~~~~~~p~~~~Nli~ka~~~~~~~~g~~~~~~I~i~k~IP~~~GLGss 101 (276)
T PRK14612 27 ELHTLMVPLD---VGDRLEVEPIAS--GLELRVLGADLPTDERNLVYRAARAYLDAAGQPGGVRITLEKRLPLAAGLGGG 101 (276)
T ss_pred eeEEEEEECC---CCCEEEEEECCC--cEEEEcCCCCCCCCCcccHHHHHHHHHHHhCCCCCeEEEEEecCCCcCCCchH
Confidence 3589999999 899999986442 23444444333322211 1 2444558999999999999999999
Q ss_pred hhhHHHHHHHHHHHhCCCHHHHHHHHHHccCCchhhhcCCeEEEEeCCCCCCCCCCCccccccccceeEEEccCCCCCCc
Q psy11141 173 AAGYSCLVFTLAYALGLNTSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWGS 252 (566)
Q Consensus 173 AA~aAAla~Aln~L~gL~~eeLs~iAr~GSGSaarSi~GGfV~w~~~~~G~~~dg~~~~~~~~~~~s~a~~I~~~~~wp~ 252 (566)
||.+||++.++|++++++ .++.++|...+++++++++||+++. . | .|+. ..+++. ++
T Consensus 102 Sa~aaa~l~al~~l~~~~-l~l~~ia~~~g~dv~~~~~GG~~~~-~---g---~g~~-----------~~~l~~----~~ 158 (276)
T PRK14612 102 SSDAAATLLALAQLYPAP-VDLPALALTLGADVPFFLLGGAAEA-R---G---VGER-----------LTPLEL----PP 158 (276)
T ss_pred HHHHHHHHHHHHHHhCCC-hHHHHHHHHhCCCcCeeeeCCeEEE-E---e---cCcc-----------ceEcCC----CC
Confidence 999999999999999985 4588888877779999999999864 3 4 2332 455542 34
Q ss_pred eEEEEEEECCCCCCCCChHHHhhhc-cCCchHHHHHhhhccchHHHHHHHHHcCCHHHHHHHHHhchhhhhhcccccCCC
Q psy11141 253 MRVIILVVNDQAKSTSSTDGMQRTT-LTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPP 331 (566)
Q Consensus 253 L~ivilVv~~~~K~vsST~~mr~~v-~ts~~~~~~v~~~~~~~v~~li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P~ 331 (566)
+.+++++++.. . ||+.+++.+ +.. +. ...++..++.++.++|...+. |.|+ |+
T Consensus 159 ~~~vv~~P~~~---~-sT~~a~~~l~~~~------~~--~~~~~~~l~~~l~~~d~~~~~-------n~l~-------~~ 212 (276)
T PRK14612 159 VPLVLVNPGVA---V-SARDAYRWLEPED------FG--PELDVEAILAALARGEEPPYW-------NSLE-------GP 212 (276)
T ss_pred cEEEEECCCCC---C-CHHHHHHhhcccc------CC--CcccHHHHHHHHHhccccccc-------CCcH-------HH
Confidence 55555554332 3 677777654 221 11 134678888899888843221 2232 22
Q ss_pred ceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCcceEEeeccCC-HHHHHHHHHhhCC
Q psy11141 332 IVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLENT-VPLLLSTLVQYFP 389 (566)
Q Consensus 332 i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV~~l~~~~~-~~~v~~~L~~~f~ 389 (566)
...+.|...++++.+.+ .| ..++.+|||||++|++|++++ .+++.+.+++.++
T Consensus 213 ~~~~~p~l~~i~~~l~~----~G-a~~~~lSGsGptvfal~~~~~~a~~~~~~l~~~~~ 266 (276)
T PRK14612 213 VFARHPELQEVLAALRA----AG-LRGVLMSGSGSTCFGLAEDAAQAQRAAAALRARHP 266 (276)
T ss_pred HHHhChHHHHHHHHHHh----CC-CCEEEEcCcchhhEEEeCCHHHHHHHHHHhHhhCC
Confidence 33345666666655433 26 467889999999999997544 6778888876543
No 17
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.83 E-value=2.3e-19 Score=185.64 Aligned_cols=198 Identities=15% Similarity=0.087 Sum_probs=134.6
Q ss_pred ccCCccEEEEEEcCCCCccccccchhhHHHHHHHHHHHhCCC-HHHHHHHHHHccCCchhhhcCCeEEEEeCCCCCCCCC
Q psy11141 149 EMADWKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLN-TSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSDG 227 (566)
Q Consensus 149 ~~~~~~v~I~s~nnIP~aaGLGSSAA~aAAla~Aln~L~gL~-~eeLs~iAr~GSGSaarSi~GGfV~w~~~~~G~~~dg 227 (566)
.+...+++|+++|+||+++|||||||++||++.++++++++. .++|.++|...+++++.+++|| +.|.+ |. |
T Consensus 88 ~~~~~~v~I~i~K~IP~~aGLGggSs~Aaa~l~~l~~~~~l~~~e~L~~lA~~lGaDvP~~l~G~-~a~~~---g~---G 160 (297)
T PRK14613 88 FPELPGVKIHLTKRISPAGGLGGGSTNAASLLNFLFSWRNFFTSDEMQVFAKEIGSDVPFFLGEG-HAFVT---GK---G 160 (297)
T ss_pred hCCCCCeEEEEEeCCCccCCccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhCCccchhhcCC-eEEEe---cC---C
Confidence 344568999999999999999999999999999999888877 6788889998888876666666 56665 53 4
Q ss_pred CCccccccccceeEEEccCCCCCCceEEEEEEECCCCCCCCChHHHhhhccCCc--hHHHHHhhhccchHHHHHHHHHcC
Q psy11141 228 NGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRTTLTST--LYEHRVNTIVPSRCSGMEEALRAR 305 (566)
Q Consensus 228 ~~~~~~~~~~~s~a~~I~~~~~wp~L~ivilVv~~~~K~vsST~~mr~~v~ts~--~~~~~v~~~~~~~v~~li~AL~~~ 305 (566)
+. .++++.+ +.+ +++++|+. .+ ||..+++.+++.. .....+ ...+...++.+|.++
T Consensus 161 e~-----------~~~l~~~---~~~-~vlv~P~~---~v-sT~~a~~~l~~~~~~~~~~~~---~~~~~~~~~~al~~~ 218 (297)
T PRK14613 161 EI-----------MEEIEVH---KGQ-GILALTPQ---VM-NTGEMYALLKKPLQESASQKN---GNTLSEDLISSLKVG 218 (297)
T ss_pred cE-----------EEEcCCC---CCe-EEEEECCC---Cc-ChHHHHHhcchhhcccccccc---ccccHHHHHHHHHcC
Confidence 32 4566421 233 34444332 24 6666666544321 111111 123456789999999
Q ss_pred CHHHHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCcceEEeecc-CCHHHHHHHH
Q psy11141 306 DFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLE-NTVPLLLSTL 384 (566)
Q Consensus 306 D~e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV~~l~~~-~~~~~v~~~L 384 (566)
|++.+...+++ .|+.... .+.|+..++++.+.+ .| ..++.+||||||||++|.+ ++.+++.+.|
T Consensus 219 ~~~~l~~~l~n---dle~~~~-------~l~P~~~~i~~~~~~----~G-a~~~~mSGSGptvf~l~~~~~~a~~~~~~l 283 (297)
T PRK14613 219 DWVSLQGRLEN---DFEPVAF-------QLHPELGVLKDKFLE----FG-SSYCSLTGSGSSMYGLVQGLEIQEELLPRL 283 (297)
T ss_pred CHHHHHHHhcc---cchHHHH-------HhCcHHHHHHHHHHH----cC-CCEEEEEccccceEEEeCCHHHHHHHHHHH
Confidence 99998776653 3433333 345666666655443 36 4578899999999999976 4578888888
Q ss_pred HhhCCC
Q psy11141 385 VQYFPP 390 (566)
Q Consensus 385 ~~~f~~ 390 (566)
++.|+.
T Consensus 284 ~~~~~~ 289 (297)
T PRK14613 284 RQEFSN 289 (297)
T ss_pred HHhhcc
Confidence 887654
No 18
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.83 E-value=2.4e-19 Score=184.24 Aligned_cols=232 Identities=11% Similarity=0.060 Sum_probs=152.5
Q ss_pred CccceeecCCCceeEEEEEecCCCCccEEEEcCccchhhhhh---------h-hccCCccEEEEEEcCCCCccccccchh
Q psy11141 105 GIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKKLAEQEKS---------S-REMADWKMHICSENNFPTAAGLASSAA 174 (566)
Q Consensus 105 dSLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~~~~~~~~~---------l-~~~~~~~v~I~s~nnIP~aaGLGSSAA 174 (566)
+++-.+++ +|++++|+..+ ..++..++..++..+.+ . ..+...+++|+++|+||+++|||||||
T Consensus 30 ~si~~~i~---l~d~v~v~~~~---~~~i~~~~~~~p~~~~nl~~~a~~~~~~~~~~~~~~~I~i~k~IP~~~GLGssSA 103 (287)
T PRK14616 30 ETIFAPIN---WYDTLTFSPSD---TISMSCTNLDLPVDDSNLCIRAAKALQEYAGVSKGVSITLDKRVPFGAGLGGGSS 103 (287)
T ss_pred eEEEEEcC---CCCEEEEEECC---CEEEEeCCCCCCCCccHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCchHHHH
Confidence 45556776 89999987533 23444343223221111 1 134456899999999999999999999
Q ss_pred hHHHHHHHHHHHhCCC--HHHHHHHHHHccCCchhhh-cCCeEEEEeCCCCCCCCCCCccccccccceeEEEccCCCCCC
Q psy11141 175 GYSCLVFTLAYALGLN--TSEVSHIARQGSGSACRSM-FGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWG 251 (566)
Q Consensus 175 ~aAAla~Aln~L~gL~--~eeLs~iAr~GSGSaarSi-~GGfV~w~~~~~G~~~dg~~~~~~~~~~~s~a~~I~~~~~wp 251 (566)
++||++.|+|+++|++ .+||.++|...+++++..+ +||++.. . | +|+. .+++.. .+
T Consensus 104 ~aaA~l~al~~l~g~~ls~~el~~~a~~ig~Dvp~~l~~gg~~~~-~---g---~g~~-----------~~~~~~---~~ 162 (287)
T PRK14616 104 DAATVLRVLNELWEINAPSADLHRLAVKLGADVPYFLEMKGLAYA-T---G---IGDE-----------LEDLQL---TL 162 (287)
T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcceEeccCCcEEE-E---E---cCce-----------eEECCc---CC
Confidence 9999999999999988 8999999998888987776 4898743 3 4 2432 334431 12
Q ss_pred ceEEEEEEECCCCCCCCChHHHhhhccCCchHHHHHhhhccchHHHHHHHHHc-CCHHHHHHHHHhchhhhhhcccccCC
Q psy11141 252 SMRVIILVVNDQAKSTSSTDGMQRTTLTSTLYEHRVNTIVPSRCSGMEEALRA-RDFPRFAELTMKDSNQFHACCLDTYP 330 (566)
Q Consensus 252 ~L~ivilVv~~~~K~vsST~~mr~~v~ts~~~~~~v~~~~~~~v~~li~AL~~-~D~e~lgel~~~Dsn~LHa~~~~~~P 330 (566)
.+.+++++++.+ + ||..++..++.... . +..++..++.++.. +|++.++. +++| + +.++
T Consensus 163 ~~~~vvv~P~~~---v-sT~~a~~~l~~~~~------~-~~~~~~~l~~~l~~~~~~~l~~~-~~nD---~-e~~~---- 222 (287)
T PRK14616 163 PFHIVTVFPEEH---I-STVWAYKNFYRRFE------R-ERPDLKTLVRRLCLDGDTSVLPA-FEND---F-ESAV---- 222 (287)
T ss_pred CcEEEEECCCCC---c-CHHHHHHHhhhhcc------c-CCchHHHHHHHHhcCCHHHHHHH-hcCc---c-HHHH----
Confidence 355555554432 3 77777765543211 1 23456677777665 67777654 3333 3 2222
Q ss_pred CceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCcceEEeecc-CCHHHHHHHHHhhCCC
Q psy11141 331 PIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLE-NTVPLLLSTLVQYFPP 390 (566)
Q Consensus 331 ~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV~~l~~~-~~~~~v~~~L~~~f~~ 390 (566)
..+.|+..++.+.+.+ .| ..++.+|||||++|++|.+ ++.+++.+.+++.|+.
T Consensus 223 --~~l~p~l~~v~~~~~~----~G-alg~~lSGSGptv~al~~~~~~a~~i~~~l~~~~~~ 276 (287)
T PRK14616 223 --FDHYPAVRKVKDDLLE----AG-SFFASLSGSGSAVFGLFENEADAEAAAEMMRARYRT 276 (287)
T ss_pred --HHhChHHHHHHHHHHh----CC-CCeEEEecccccceEEeCCHHHHHHHHHHhHHhCcc
Confidence 2345666666554444 36 4567899999999999976 4578899999988765
No 19
>PLN02407 diphosphomevalonate decarboxylase
Probab=99.83 E-value=7.7e-21 Score=198.60 Aligned_cols=101 Identities=35% Similarity=0.567 Sum_probs=87.0
Q ss_pred CCcccCCCCCch--------hhHHHHHHcCCCC-hHHHHHHHhhccccccccccCCeEEeecCCCCCCCCCCCCcccccc
Q psy11141 444 NNHLLNEAGAPK--------HLMFTLAYALGLN-TSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSEGNGDIGRKQF 514 (566)
Q Consensus 444 ~~~Lld~~Glp~--------ala~~~~~~~~~~-~~~~s~~ar~gsgsa~rs~~g~~~~w~~~~~g~~~~~~~~~~~~~~ 514 (566)
+++++.+.||.. +.+++.+++++++ .+++|++||+||||||||+|||||.|++ |...|+
T Consensus 111 ~N~~PtaaGLaSSAs~~aAl~~al~~~~~~~~~~~~~ls~lAr~GSGSa~rS~~Gg~v~w~~---G~~~d~--------- 178 (343)
T PLN02407 111 YNNFPTAAGLASSAAGFACLVFALAKLMNVKEDFPGELSAIARQGSGSACRSLYGGFVKWNM---GKKEDG--------- 178 (343)
T ss_pred ccCCccccchHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHhccChHHHHHhhCCeEEecC---CCCCCC---------
Confidence 467888888873 3345566888999 9999999999999999999999999999 644343
Q ss_pred CCceeEecCCCCCccceeeEEEEecCCCCccc--------ccchhhHhhc
Q psy11141 515 ELSNAEQIISESYWGSMRVIILVHLEYVPRVS--------NDTTILFKKL 556 (566)
Q Consensus 515 ~d~~a~~~~~~~~~~~~~~~i~v~~~~~k~vs--------~~~~~~~~~~ 556 (566)
+||||+|+.++.+|+||+++|+|+++++|+|| ++||+||+.|
T Consensus 179 ~ds~A~~i~~~~~~~dl~~~i~vv~~~~K~vsSt~GM~~tv~TSp~~~~w 228 (343)
T PLN02407 179 SDSIAVQLADEKHWDDLVIIIAVVSSRQKETSSTSGMRESVETSPLLQHR 228 (343)
T ss_pred CceeEEECCCccCCccceEEEEEEcCCcCCCCchHHHHHhhhcChhHHHH
Confidence 37999999988899999999999999999996 7999999876
No 20
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.82 E-value=7.4e-19 Score=181.22 Aligned_cols=227 Identities=12% Similarity=0.074 Sum_probs=142.8
Q ss_pred ccceeecCCCceeEEEEEecCCCCccEEEEcCcc---chhhhhhh---------h-cc-CCccEEEEEEcCCCCcccccc
Q psy11141 106 IEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKK---LAEQEKSS---------R-EM-ADWKMHICSENNFPTAAGLAS 171 (566)
Q Consensus 106 SLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~~---~~~~~~~l---------~-~~-~~~~v~I~s~nnIP~aaGLGS 171 (566)
|+=.+++ +|++.+|+..++ +.+.+.|.. ++.+++++ + .+ ...+++|+++|+||+++||||
T Consensus 34 s~~~~i~---l~D~l~i~~~~~---~~i~~~~~~~~~ip~~~~Nlv~ka~~~~~~~~g~~~~~~~i~i~k~IP~~~GLGs 107 (290)
T PRK14608 34 SLVAFAD---VGDRLTLEPAEA---LSLTVSGPFAAGLGDGDDNLVLRAARALRARVGPGLPPGAFHLEKNLPVAAGIGG 107 (290)
T ss_pred EEEEECC---CCcEEEEEECCC---CcEEEeCCCccCCCCCCCcHHHHHHHHHHHHhCCCCCceEEEEEeCCcCcCCchH
Confidence 3334555 888888875442 346665532 33322221 1 33 345799999999999999999
Q ss_pred chhhHHHHHHHHHHHhCCC--HHHHHHHHHHccCCchhhhcCCeEEEEeCCCCCCCCCCCccccccccceeEEEccCCCC
Q psy11141 172 SAAGYSCLVFTLAYALGLN--TSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESY 249 (566)
Q Consensus 172 SAA~aAAla~Aln~L~gL~--~eeLs~iAr~GSGSaarSi~GGfV~w~~~~~G~~~dg~~~~~~~~~~~s~a~~I~~~~~ 249 (566)
|||.+||++.++|++++++ .+||.++|...+++++++++||++.. . | .|+. ..+++.
T Consensus 108 ssa~aaa~l~~l~~l~~~~ls~~el~~la~~ig~dv~~~l~gg~~~~-~---g---~g~~-----------~~~l~~--- 166 (290)
T PRK14608 108 GSADAAAALRLLARLWGLALDDERLAALALSLGADVPVCLDSRPLIM-R---G---IGEE-----------LTPLPG--- 166 (290)
T ss_pred HHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchhhcCCeEEE-E---e---cCCE-----------eEECCC---
Confidence 9999999999999999988 89999999988889999999999753 3 4 2432 355532
Q ss_pred CCceEEEEEEECCCCCCCCChHHHhhhccCCc--hHHHHHhhhccchHHHHHHHHHcCCHHHHHHHHHhchhhhhhcccc
Q psy11141 250 WGSMRVIILVVNDQAKSTSSTDGMQRTTLTST--LYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLD 327 (566)
Q Consensus 250 wp~L~ivilVv~~~~K~vsST~~mr~~v~ts~--~~~~~v~~~~~~~v~~li~AL~~~D~e~lgel~~~Dsn~LHa~~~~ 327 (566)
.+++.+++++++.+ + ||..+++.++... .....+.+ ..+...+..++.. ..|.|..+..
T Consensus 167 ~~~~~~vv~~p~~~---~-sT~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~~~~~------------~~ndle~~~~- 227 (290)
T PRK14608 167 LPSLPAVLVNPGVP---V-ATPDVFRALGLRDGPPLPGAPDP--LASADALLAALAA------------TRNDLEPPAL- 227 (290)
T ss_pred CCCcEEEEECCCCC---c-ChHHHHHhhccccCCcchhhhhh--hhhhhhHHHHHHh------------ccCccHHHHH-
Confidence 25666665554333 3 5777766544221 11111111 1233334333322 1123333322
Q ss_pred cCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCcceEEeeccC-CHHHHHHHHHhhC
Q psy11141 328 TYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLEN-TVPLLLSTLVQYF 388 (566)
Q Consensus 328 ~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV~~l~~~~-~~~~v~~~L~~~f 388 (566)
.+.|+..++.+.+.+.. | ..++.+|||||+||++|.++ +.+++.+.|++.+
T Consensus 228 ------~l~p~l~~i~~~~~~~~---G-a~~~~lSGSGstvf~l~~~~~~a~~~~~~l~~~~ 279 (290)
T PRK14608 228 ------ALAPVIGEVLAALRAQP---G-ALLARMSGSGATCFALFADEAAAEAAAAAIAAAH 279 (290)
T ss_pred ------HcCcHHHHHHHHHHhcC---C-CCeeEEeccccCeEEEeCCHHHHHHHHHHhHhhC
Confidence 23456666666555430 5 45688999999999999754 3677888887654
No 21
>PRK03926 mevalonate kinase; Provisional
Probab=99.81 E-value=3.7e-18 Score=175.77 Aligned_cols=234 Identities=16% Similarity=0.178 Sum_probs=147.9
Q ss_pred CCCccceeecCCCceeEEEEEecCCCCccEEEEcCc--cchhhh----hh---h-hccCCccEEEEEEcCCCCccccccc
Q psy11141 103 LNGIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGK--KLAEQE----KS---S-REMADWKMHICSENNFPTAAGLASS 172 (566)
Q Consensus 103 ~ndSLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~--~~~~~~----~~---l-~~~~~~~v~I~s~nnIP~aaGLGSS 172 (566)
+.++|+++++ +|++++++..++ .+.+... ..+... +. + ......+++|+++++||+++|||||
T Consensus 21 g~~~l~~aI~---~~~~v~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~~~iP~~~GLGSS 93 (302)
T PRK03926 21 GKPAIACAID---LRTYVRAEFNDD----SIYIESDYGKTGEKHPYVSAAIEKMREEADKDGVTVSITSQIPVGSGLGSS 93 (302)
T ss_pred CCeEEEEEec---ceEEEEEEECCC----ceEEecccccccchhHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCCccHH
Confidence 7889999998 899999876532 2223221 111111 11 1 1111237999999999999999999
Q ss_pred hhhHHHHHHHHHHHhCCC--HHHHHHHHHHc--------cC-CchhhhcCCeEEEEeCCCCCCCCCCCccccccccceeE
Q psy11141 173 AAGYSCLVFTLAYALGLN--TSEVSHIARQG--------SG-SACRSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNA 241 (566)
Q Consensus 173 AA~aAAla~Aln~L~gL~--~eeLs~iAr~G--------SG-SaarSi~GGfV~w~~~~~G~~~dg~~~~~~~~~~~s~a 241 (566)
||.++|++.|++++++++ .++|.++|... +| |+++|+|||++.+.. . +
T Consensus 94 sA~~~a~~~al~~~~~~~l~~~~l~~la~~~E~~~~G~~sg~D~~~~~~Gg~~~~~~----~---~-------------- 152 (302)
T PRK03926 94 AAVTVATIGALNRLLGLGLSLEEIAKLGHKVELLVQGAASPTDTYVSTMGGFVTIPD----R---K-------------- 152 (302)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCCCchHHHHHHhcCCeEEEcC----C---C--------------
Confidence 999999999999999988 89999998543 23 679999999986532 1 1
Q ss_pred EEccCCCCCCceEEEEEEECCCCCCCCChHHHhhhcc----CCc-hHHHHHhhhccchHHHHHHHHHcCCHHHHHHHHHh
Q psy11141 242 EQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRTTL----TST-LYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMK 316 (566)
Q Consensus 242 ~~I~~~~~wp~L~ivilVv~~~~K~vsST~~mr~~v~----ts~-~~~~~v~~~~~~~v~~li~AL~~~D~e~lgel~~~ 316 (566)
+++. +++.++++.+. ++. +|..+.+.++ ..+ .++...+. .......+..++.++|++.|+++|..
T Consensus 153 -~l~~----~~~~~vl~~~~---~~~-sT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~d~~~l~~~~~~ 222 (302)
T PRK03926 153 -KLPF----PECGIVVGYTG---SSG-STKELVANVRKLKEEYPELIEPILSS-IGKISEKGEELILSGDYVSLGELMNI 222 (302)
T ss_pred -cCCC----CCceEEEEECC---CCC-cHHHHHHHHHHHHHhCHHHHHHHHHH-HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 2221 34444443332 233 5555533221 111 12122222 12344566788999999999999854
Q ss_pred chhhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCc--ceEEeeccCCHHHHHHHHHhh
Q psy11141 317 DSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGP--NACLYVLENTVPLLLSTLVQY 387 (566)
Q Consensus 317 Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGP--nV~~l~~~~~~~~v~~~L~~~ 387 (566)
|...+ + .+....|+..++++.+.+ . | ..++.+||||| ++++++++++.+++.+.+.+.
T Consensus 223 ~~~~~-----~---~~~~~~p~l~~l~~~~~~---~-g-a~ga~lSGaG~Gg~v~~l~~~~~~~~~~~~~~~~ 282 (302)
T PRK03926 223 NQGLL-----D---ALGVSTKELSELIYAART---A-G-ALGAKITGAGGGGCMVALAAPEKQSEVATAIKIA 282 (302)
T ss_pred HHHHH-----H---hcCCCCHHHHHHHHHHHh---C-C-CceeeeccCCCCCEEEEEeccccHHHHHHHHHhc
Confidence 33211 1 112344555555554443 3 5 45678999999 999999887888888887764
No 22
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.80 E-value=1.9e-18 Score=178.81 Aligned_cols=242 Identities=11% Similarity=0.024 Sum_probs=151.9
Q ss_pred CCccceeecCCCceeEEEEEecCCCCccEEEEcCccchhhh--------hhh-hccCCccEEEEEEcCCCCccccccchh
Q psy11141 104 NGIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKKLAEQE--------KSS-REMADWKMHICSENNFPTAAGLASSAA 174 (566)
Q Consensus 104 ndSLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~~~~~~~--------~~l-~~~~~~~v~I~s~nnIP~aaGLGSSAA 174 (566)
-+|++++++ .++++.+|+..++ .+.++..++...+.++ ... ..+...+++|+++++||.++|||||||
T Consensus 32 l~sl~~~i~--~~~D~l~i~~~~~-~~i~~~~~~~~~~~~~Nlv~~a~~~~~~~~~~~~~~~i~i~k~IP~~~GLGsgsa 108 (296)
T PRK14615 32 IDSLFLPLP--EPHDELHVRVTDA-PGITVTCTIPDLDPERNTVTRAYTAFAAATGFRPPLEVHLRKGIPHGAGLGGGSA 108 (296)
T ss_pred eEEEEEECC--CCCcEEEEEECCC-CCEEEEECCCCCCCCccHHHHHHHHHHHHhCCCCCeEEEEEeCCCCCCCccHHHH
Confidence 379999998 5799999986542 1233444443332221 111 234456899999999999999999999
Q ss_pred hHHHHHHHHHHHhCCC--HHHHHHHHHHccCCchhhhcCCeEEEEeCCCCCCCCCCCccccccccceeEEEccCCCCCCc
Q psy11141 175 GYSCLVFTLAYALGLN--TSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWGS 252 (566)
Q Consensus 175 ~aAAla~Aln~L~gL~--~eeLs~iAr~GSGSaarSi~GGfV~w~~~~~G~~~dg~~~~~~~~~~~s~a~~I~~~~~wp~ 252 (566)
.+||++.++|++++++ .++|.++|..++++++.+++||.++ .. |. |+ ..++++.+ .++
T Consensus 109 ~aaa~l~al~~l~~~~l~~~~l~~~a~~~gaDvPffl~gg~a~-~~---G~---Ge-----------~~~~l~~~--~~~ 168 (296)
T PRK14615 109 DAAALLRHLNSIAPHPLSPEALAKLAAGVGADVPFFLHNVPCR-AT---GI---GE-----------ILTPVALG--LSG 168 (296)
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCCeeeccCCCEE-EE---ee---Ee-----------EEEECCCC--CCC
Confidence 9999999999999987 8999999998888999999999974 44 53 43 24555321 245
Q ss_pred eEEEEEEECCCCCCCCChHHHhhhccCCchHHHH--HhhhccchHHHHHHHHHcCCHHHHHHHHHhchhhhhhcccccCC
Q psy11141 253 MRVIILVVNDQAKSTSSTDGMQRTTLTSTLYEHR--VNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYP 330 (566)
Q Consensus 253 L~ivilVv~~~~K~vsST~~mr~~v~ts~~~~~~--v~~~~~~~v~~li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P 330 (566)
+.+++++|+. .+ ||..+.+.++.....+.. .. .......+..+...+|.+.+++... -.|.|+.+.+
T Consensus 169 ~~~vl~~P~~---~v-sT~~a~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~-l~ndle~~~~---- 237 (296)
T PRK14615 169 WTLVLVCPEV---QV-STPWAYAAWDAANAKQIAASSR--KQNRLRGCLTTEGVADRNPLSRGLW-LHNSFEPVVF---- 237 (296)
T ss_pred cEEEEECCCC---Cc-ChHHHHHHhhhhcccccccccc--cccchHHHHHhhhccchhhhhhhhh-ccccchhHhH----
Confidence 5555554432 34 555554332211100000 00 0122334555666667766654321 0134443333
Q ss_pred CceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCcceEEeeccC-CHHHHHHHHHhh
Q psy11141 331 PIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLEN-TVPLLLSTLVQY 387 (566)
Q Consensus 331 ~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV~~l~~~~-~~~~v~~~L~~~ 387 (566)
.+.|+..++++.+.+ .| ..++.||||||+||++|..+ +.+++.+.|++.
T Consensus 238 ---~l~P~l~~~~~~~~~----~G-Alga~mSGSGptvfaL~~~~~~a~~i~~~l~~~ 287 (296)
T PRK14615 238 ---AAHPELRRLKETLLR----HG-AAAALMSGSGSSVFGLFRRRAQAEAAFEMLKGH 287 (296)
T ss_pred ---HhChHHHHHHHHHHh----cC-CCEEEEeccCcceEEEeCCHHHHHHHHHHHhhh
Confidence 345566666655544 36 45688999999999998654 467888888774
No 23
>PTZ00298 mevalonate kinase; Provisional
Probab=99.80 E-value=7.5e-18 Score=176.37 Aligned_cols=203 Identities=16% Similarity=0.192 Sum_probs=133.9
Q ss_pred ccEEEEEEcCCCCccccccchhhHHHHHHHHHHHhCCC--HHHHHHHHHH------c--cC-CchhhhcCCeEEEEeCCC
Q psy11141 153 WKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLN--TSEVSHIARQ------G--SG-SACRSMFGGFVRWKTLPE 221 (566)
Q Consensus 153 ~~v~I~s~nnIP~aaGLGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~------G--SG-SaarSi~GGfV~w~~~~~ 221 (566)
.+++|+++++||.++|||||||.+||++.|+|++++++ .+||.++|.. | +| +.+.++|||++....
T Consensus 93 ~g~~I~I~~~IP~gaGLGSSsA~avA~l~al~~l~~~~ls~~el~~~a~~~E~~~~g~~sG~D~~~~~~Gg~~~~~~--- 169 (328)
T PTZ00298 93 DGLKMHLGGPLVPSSGIGASASDVVSLSRALSELYQLNLTEEEVNLSAFVGEGGYHGTPSGADNTAATYGGLISYRR--- 169 (328)
T ss_pred CCeEEEEECCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCChHHHHHHHcCCeEEEec---
Confidence 47999999999999999999999999999999999988 8999999865 2 22 678899999986543
Q ss_pred CCCCCCCCccccccccceeEEEccCCCCCCceEEEEEEECCCCCCCCChHHH-hhh---ccCCc-hHHHHHhhhccchHH
Q psy11141 222 GQQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTDGM-QRT---TLTST-LYEHRVNTIVPSRCS 296 (566)
Q Consensus 222 G~~~dg~~~~~~~~~~~s~a~~I~~~~~wp~L~ivilVv~~~~K~vsST~~m-r~~---v~ts~-~~~~~v~~~~~~~v~ 296 (566)
+ ++.. ...+++.+ +++.++++.++. .. ||..+ +.. .+..+ .++...+. ....+.
T Consensus 170 ~---~g~~----------~~~~l~~~---~~~~lvv~~~~~---~~-sT~~~~~~v~~~~~~~p~~~~~~~~~-~~~~~~ 228 (328)
T PTZ00298 170 V---NGKS----------VFKRIAFQ---QPLYLVVCSTGI---TA-STTKVVGDVRKLKENQPTWFNRLLEN-YNACVS 228 (328)
T ss_pred C---CCcc----------ceeEecCC---CCCeEEEEECCC---ch-hHHHHHHHHHHHHhcCHHHHHHHHHH-HHHHHH
Confidence 2 2211 23455321 345544444332 23 45443 211 11111 12222222 234678
Q ss_pred HHHHHHHcCCHHHHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCc--ceEEeecc
Q psy11141 297 GMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGP--NACLYVLE 374 (566)
Q Consensus 297 ~li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGP--nV~~l~~~ 374 (566)
.++.+|.++|++.++++|..+.+.+... ....|+..++++.+++ . | ..++.+||||| +|+++++.
T Consensus 229 ~~~~al~~~d~~~lg~~m~~~~~~l~~~--------~v~~p~l~~l~~~~~~---~-G-a~gaklSGsG~GG~v~al~~~ 295 (328)
T PTZ00298 229 EAKEALQKGNLFRVGELMNANHDLCQKL--------TVSCRELDSIVQTCRT---Y-G-ALGAKMSGTGRGGLVVALAAS 295 (328)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHh---C-C-CceeEeccCCCCeEEEEEecc
Confidence 8899999999999999886544333322 1134555555544433 3 6 45789999999 68888865
Q ss_pred -CCHHHHHHHHHhhCCCCC
Q psy11141 375 -NTVPLLLSTLVQYFPPSS 392 (566)
Q Consensus 375 -~~~~~v~~~L~~~f~~~~ 392 (566)
++.+++.+.|++.++...
T Consensus 296 ~~~a~~~~~~l~~~~~~~~ 314 (328)
T PTZ00298 296 EDQRDAIAKAVRARCPEAK 314 (328)
T ss_pred hhhHHHHHHHHHHHhhhcC
Confidence 557788889888765543
No 24
>PRK01123 shikimate kinase; Provisional
Probab=99.80 E-value=6.6e-18 Score=173.29 Aligned_cols=217 Identities=17% Similarity=0.174 Sum_probs=141.7
Q ss_pred ceeecCCCceeEEEEEecCCCCccEEEEcCcc--chhhh---------hhh-hccCCccEEEEEEcCCCCccccccchhh
Q psy11141 108 PIEITFQRMHAKTSVALSPDFTEDKLWLNGKK--LAEQE---------KSS-REMADWKMHICSENNFPTAAGLASSAAG 175 (566)
Q Consensus 108 SltLd~~~lyt~TtV~~s~~~~~d~i~lnG~~--~~~~~---------~~l-~~~~~~~v~I~s~nnIP~aaGLGSSAA~ 175 (566)
+++|| +|++++|+..++ .++++|+. ++..+ ..+ ..+...+++|+++++||.++|||||||+
T Consensus 24 ~~~i~---l~~~v~v~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~i~s~IP~~~GLGSSaA~ 96 (282)
T PRK01123 24 AFGID---LKTTATVELSDD----GGGIEGEISGNPDADTRLIERCVELVLERFGIDYGATVRTKSEIPLASGLKSSSAA 96 (282)
T ss_pred EEEec---cEEEEEEEECCC----CceeeecccCCCCCCchHHHHHHHHHHHHhCCCCCEEEEEecCCCCCCCccHHHHH
Confidence 46888 899999986443 34444331 11111 111 2344458999999999999999999999
Q ss_pred HHHHHHHHHHHhCCC--HHHHHHHHHHc--------cC---CchhhhcCCeEEEEeCCCCCCCCCCCccccccccceeEE
Q psy11141 176 YSCLVFTLAYALGLN--TSEVSHIARQG--------SG---SACRSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAE 242 (566)
Q Consensus 176 aAAla~Aln~L~gL~--~eeLs~iAr~G--------SG---SaarSi~GGfV~w~~~~~G~~~dg~~~~~~~~~~~s~a~ 242 (566)
++|++.|++++++++ .++|.++|... +| ++++|+|||++++.. . +. ....
T Consensus 97 ~va~~~a~~~~~~~~l~~~el~~la~~~e~~~~~~~~g~~~d~~~~~~GG~~~~~~---~----~~----------~~~~ 159 (282)
T PRK01123 97 ANATVLATLDALGEDLDDLDILRLGVKASRDAGVTVTGAFDDACASYFGGVTVTDN---R----EM----------KLLK 159 (282)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHhhccccccccCchhHHHHHHhCCEEEEcC---C----Cc----------eEEE
Confidence 999999999999987 89999999762 34 689999999987532 1 11 1234
Q ss_pred EccCCCCCCceEEEEEEECCCCCCCCChHHHhhhc-cCCchHHHHHhhhccchHHHHHHHHHcCCHHHHHHHHHhchhhh
Q psy11141 243 QIISESYWGSMRVIILVVNDQAKSTSSTDGMQRTT-LTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQF 321 (566)
Q Consensus 243 ~I~~~~~wp~L~ivilVv~~~~K~vsST~~mr~~v-~ts~~~~~~v~~~~~~~v~~li~AL~~~D~e~lgel~~~Dsn~L 321 (566)
+++ +++++++++++.+. +|...+..+ ++ .....+.+..+++.+|+.. +|..|. .+
T Consensus 160 ~~~-----~~~~~vv~~p~~~~----~T~~~r~~~l~~-----------~~~~~d~~~~~~~~~~l~~---~~~~~~-l~ 215 (282)
T PRK01123 160 RDE-----VELDVLVLIPPEGA----FSASADVERMKL-----------IAPYVDMAFELALDGEYFK---AMTLNG-LL 215 (282)
T ss_pred Eec-----CCcEEEEEECCCCc----chhhhhhhhchh-----------cCcHHHHHHHHHhhccHHH---HHHhCC-ch
Confidence 443 24667777765443 454444321 22 2234456666667788864 333331 12
Q ss_pred hhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCcceEEeeccCCHHHHHHHHHhh
Q psy11141 322 HACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLENTVPLLLSTLVQY 387 (566)
Q Consensus 322 Ha~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV~~l~~~~~~~~v~~~L~~~ 387 (566)
++ ..+.+.. +++ .+.++ .| ..++.+||+||+|++++++++.+++.++|++.
T Consensus 216 ---~~------~~l~~~~-~~i---~~a~~-~G-a~ga~lSGaGptv~al~~~~~~~~v~~~l~~~ 266 (282)
T PRK01123 216 ---YS------SALGFPT-EPA---LEALE-AG-AVGVGLSGTGPSYVAIVDEEDPEEVKEAWEKY 266 (282)
T ss_pred ---hh------hhhCCCh-HHH---HHHHH-CC-CeEEEEecCCCeEEEEeCCCCHHHHHHHHHhC
Confidence 21 1234442 333 33343 37 56789999999999999888888899998874
No 25
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.
Probab=99.79 E-value=5.1e-18 Score=175.23 Aligned_cols=233 Identities=13% Similarity=0.085 Sum_probs=148.0
Q ss_pred CccceeecCCCceeEEEEEecCCCCccEEEEcCccchhhh----h---hh-h-cc----CCccEEEEEEcCCCCcccccc
Q psy11141 105 GIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKKLAEQE----K---SS-R-EM----ADWKMHICSENNFPTAAGLAS 171 (566)
Q Consensus 105 dSLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~~~~~~~----~---~l-~-~~----~~~~v~I~s~nnIP~aaGLGS 171 (566)
+|+-.+++ ++++.+++..++ ...++.-+...++.+. + .+ . .+ ...+++|+++++||.++||||
T Consensus 28 ~sl~~~i~---l~d~v~i~~~~~-~~i~~~~~~~~~~~~~nlv~~a~~~l~~~~~~~~~~~~~~~i~i~~~iP~~aGLGs 103 (293)
T TIGR00154 28 QTLMQFLD---LGDKIIISVRSD-DDIRLLKGDFDVPLEENLIYRAAQLLKNFANSKIKSLDGANIEIDKNIPMGAGLGG 103 (293)
T ss_pred EEEEEEec---cCcEEEEEECCC-CcEEEeeCCCCCCCCCcHHHHHHHHHHHHhcccccCCCCeEEEEeccCCCCCCcch
Confidence 47778888 788888875442 1112222221122111 1 11 1 22 245799999999999999999
Q ss_pred chhhHHHHHHHHHHHhCCC--HHHHHHHHHHccCCchhhhcCCeEEEEeCCCCCCCCCCCccccccccceeEEEccCCCC
Q psy11141 172 SAAGYSCLVFTLAYALGLN--TSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESY 249 (566)
Q Consensus 172 SAA~aAAla~Aln~L~gL~--~eeLs~iAr~GSGSaarSi~GGfV~w~~~~~G~~~dg~~~~~~~~~~~s~a~~I~~~~~ 249 (566)
|||.+||++.|++++++++ .++|.++|...+++++.+++||++.. . |. |+. ..+++.
T Consensus 104 ssa~aaa~l~al~~~~~~~l~~~~l~~la~~lg~Dv~~~~~gg~~~~-~---g~---ge~-----------~~~l~~--- 162 (293)
T TIGR00154 104 GSSDAATVLVGLNQLWQLGLSLEELAELGLTLGADVPFFVSGHAAFA-T---GV---GEI-----------ITPFED--- 162 (293)
T ss_pred hHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcceEEECCeEEE-E---ec---CcE-----------EEECCC---
Confidence 9999999999999999987 89999999988889999999999754 3 42 432 345532
Q ss_pred CCceEEEEEEECCCCCCCCChHHHhhhccCCchHHHHHhhhccchHHHHHHHHHcCCHHHHHHHHHhchhhhhhcccccC
Q psy11141 250 WGSMRVIILVVNDQAKSTSSTDGMQRTTLTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTY 329 (566)
Q Consensus 250 wp~L~ivilVv~~~~K~vsST~~mr~~v~ts~~~~~~v~~~~~~~v~~li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~ 329 (566)
.+++.++++.++. .+ ||..+++.++.. +. .......++.++..++++.+...+. |.|..+....
T Consensus 163 ~~~~~~vl~~p~~---~~-sT~~~~~~l~~~-------~~-~~~~~~~l~~~~~~~~~~~~~~~~~---ndle~~~~~~- 226 (293)
T TIGR00154 163 PPEKWVVIAKPHV---SI-STPVVYQAYKLP-------RN-TPKRAKEWLKKISLECLQLLDSNGL---NDLEKVALKR- 226 (293)
T ss_pred CCCcEEEEEcCCC---Cc-ChHHHHHhhhhc-------cc-CcchhHHHHHHHhhccHHHHhhhhc---CccHHHHHhc-
Confidence 1455545444332 33 666665433200 00 2334556778888888877655443 3354444332
Q ss_pred CCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCcceEEeeccCC-HHHHHHHHHhhCC
Q psy11141 330 PPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLENT-VPLLLSTLVQYFP 389 (566)
Q Consensus 330 P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV~~l~~~~~-~~~v~~~L~~~f~ 389 (566)
.|+..++++.+++ . | ..++.||||||+||+++++++ .+++.+.+++.++
T Consensus 227 ------~p~l~~i~~~l~~---~-G-a~~a~mSGSG~tvf~l~~~~~~a~~~~~~~~~~~~ 276 (293)
T TIGR00154 227 ------HTEVAQALNWLLE---Y-G-LAPERLSGSGACVFALFDMESEAEQVLEQAPEWLN 276 (293)
T ss_pred ------CHHHHHHHHHHHh---C-C-CCeEEEeccccceEEEeCCHHHHHHHHHHhHHHhh
Confidence 3444555544433 3 6 457889999999999997544 5667776665443
No 26
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.77 E-value=1.3e-17 Score=171.50 Aligned_cols=232 Identities=10% Similarity=0.095 Sum_probs=142.8
Q ss_pred CccceeecCCCceeEEEEEecCCCCccEEEEcCcc-chhhh--------hhh-hccCCccEEEEEEcCCCCccccccchh
Q psy11141 105 GIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKK-LAEQE--------KSS-REMADWKMHICSENNFPTAAGLASSAA 174 (566)
Q Consensus 105 dSLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~~-~~~~~--------~~l-~~~~~~~v~I~s~nnIP~aaGLGSSAA 174 (566)
+|+=++++ +|++.+++..++ ...+.+.+.. .+.++ ... ..+...+++|+++|+||+++|||||||
T Consensus 30 ~s~~~~i~---l~D~l~i~~~~~--~~~~~~~~~~~~~~~~Nlv~kA~~~l~~~~~~~~g~~i~i~K~IP~~aGLGggSs 104 (283)
T PRK14610 30 ESLFVFVN---LYDFLEIKIGSK--NRGVEFVNSLKINRYNNTVQRAIGLLLRHSPVRTNVYVKVIKNIPVSAGLAGGSA 104 (283)
T ss_pred heeeEEcC---CCCEEEEEECCC--CCeEEEeCCCCCCCCCcHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCcCCccHH
Confidence 34445666 899888875442 1246665532 21111 111 234455899999999999999999999
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHccCCchhhhcCCeEEEEeCCCCCCCCCCCccccccccceeEEEccCCCCCCceE
Q psy11141 175 GYSCLVFTLAYALGLNTSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMR 254 (566)
Q Consensus 175 ~aAAla~Aln~L~gL~~eeLs~iAr~GSGSaarSi~GGfV~w~~~~~G~~~dg~~~~~~~~~~~s~a~~I~~~~~wp~L~ 254 (566)
++||++.++|++++++.+||.++|...+.+++++++||.+ |.+ |. |+. .+++++. ..+..
T Consensus 105 ~aaa~L~~ln~l~~ls~~~l~~ia~~lGaDvPffl~g~~a-~~~---G~---Ge~-----------l~~l~~~--~~~~~ 164 (283)
T PRK14610 105 DAAAVIRLLGKLWGIDEQILNELALSVGSDVPACLDSKTL-FVR---GI---GED-----------ILLLPDL--SLPTY 164 (283)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCcEEEECCeE-EEE---ec---ccE-----------EEECccc--CCCCe
Confidence 9999999999999988899999998777799999999997 666 74 542 5566421 12223
Q ss_pred EEEEEECCCCCCCCChHHHhhhccCCchHHHHHhhhccchHHHHHHHHHcCCHHHHHHHHHhchhhhhhcccccCCCcee
Q psy11141 255 VIILVVNDQAKSTSSTDGMQRTTLTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVY 334 (566)
Q Consensus 255 ivilVv~~~~K~vsST~~mr~~v~ts~~~~~~v~~~~~~~v~~li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P~i~y 334 (566)
++++.|. ...+||.++++.. +... + . . ....+ .+..+++..+...+ .|.|+.+...
T Consensus 165 -~vl~~p~-~~~~sT~~vy~~~-~~~~-~----~---~-~~~~~--~~~~~~~~~~~~~~---~Ndle~~~~~------- 220 (283)
T PRK14610 165 -VVLVAPK-GKFLSTRKVFNKY-ECKA-F----S---E-PIDNL--PVAQDDLLELLKEA---RNDLLETAIS------- 220 (283)
T ss_pred -EEEEECC-CCccChHHHHHhh-cccc-c----C---C-ccccc--ccchhHHHHHHHHh---cCchHHHHHH-------
Confidence 3333332 2356777777653 2100 0 0 0 00000 22233443332222 3445544443
Q ss_pred ccccHHHHHHHHHHHHHhhCCceEEEEeCCCcceEEeecc-CCHHHHHHHHHhhCC
Q psy11141 335 MNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLE-NTVPLLLSTLVQYFP 389 (566)
Q Consensus 335 l~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV~~l~~~-~~~~~v~~~L~~~f~ 389 (566)
+.|+..++++.+++. .| ..+++|||||||||+++.. +..+++.+.+++.++
T Consensus 221 l~P~l~~~~~~l~~~---~g-a~~a~mSGSGsTvf~l~~~~~~a~~~~~~l~~~~~ 272 (283)
T PRK14610 221 LVPEIEEILFVLESL---EG-CILSRMSGSGATCFALFEEEEAAEAAARYLKMTRP 272 (283)
T ss_pred hChHHHHHHHHHHhc---CC-CceEEEeCcccceeEEeCCHHHHHHHHHHhhhhCC
Confidence 345556666544332 24 4568899999999999965 446777777776543
No 27
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]
Probab=99.76 E-value=2.4e-17 Score=169.19 Aligned_cols=228 Identities=15% Similarity=0.153 Sum_probs=158.9
Q ss_pred ccceeecCCCceeEEEEEecCCCCccEEEEcCc---cchhhhhhh----------hccCCccEEEEEEcCCCCccccccc
Q psy11141 106 IEPIEITFQRMHAKTSVALSPDFTEDKLWLNGK---KLAEQEKSS----------REMADWKMHICSENNFPTAAGLASS 172 (566)
Q Consensus 106 SLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~---~~~~~~~~l----------~~~~~~~v~I~s~nnIP~aaGLGSS 172 (566)
|+=-+++ ++++.+++..+ .|.+.+.|. .++.++ ++ .++...+++|+++|+||+++|||++
T Consensus 31 sl~~~id---~~D~l~i~~~~---~~~~~~~~~~~~~lp~~~-NLv~rAa~ll~~~~~~~~~v~I~l~K~IPv~aGLGGG 103 (289)
T COG1947 31 TLFQFID---LGDELTIRPRD---DDGFIVLGTFADGLPTDE-NLVYRAAELLRKRTGIAGGVSIHLDKNIPVGAGLGGG 103 (289)
T ss_pred EEEEEec---cCCEEEEEECC---CCCceEecCCCCCCCCcc-hHHHHHHHHHHHHhCCCCCeeEEEEecCcccCcCccc
Confidence 3334555 88999988655 245555553 244443 21 2566678999999999999999999
Q ss_pred hhhHHHHHHHHHHHhCCC--HHHHHHHHHHccCCchhhhcCCeEEEEeCCCCCCCCCCCccccccccceeEEEccCCCCC
Q psy11141 173 AAGYSCLVFTLAYALGLN--TSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYW 250 (566)
Q Consensus 173 AA~aAAla~Aln~L~gL~--~eeLs~iAr~GSGSaarSi~GGfV~w~~~~~G~~~dg~~~~~~~~~~~s~a~~I~~~~~w 250 (566)
||.+||+++++|++++++ .+||..+|.+.+.+++.+++||.... + |. ||. .+++.. -
T Consensus 104 SSdAAa~L~~Ln~lw~~~ls~~eL~~Lg~~LGaDVPffl~g~tA~a-~---G~---GE~-----------l~~~~~---~ 162 (289)
T COG1947 104 SSDAAAVLVALNELWGLGLSLEELAELGLRLGADVPFFLSGGTAFA-E---GR---GEK-----------LEPLED---P 162 (289)
T ss_pred hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcCeeeeCCceEE-E---Ec---cce-----------eeECCC---C
Confidence 999999999999999988 99999999877779999999998754 4 64 553 566652 1
Q ss_pred CceEEEEEEECCCCCCCCChHHHhhhccCCchHHHHHhhhccchHHHHHHHHHcCCHHHHHHHHHhchhhhhhcccccCC
Q psy11141 251 GSMRVIILVVNDQAKSTSSTDGMQRTTLTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYP 330 (566)
Q Consensus 251 p~L~ivilVv~~~~K~vsST~~mr~~v~ts~~~~~~v~~~~~~~v~~li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P 330 (566)
++..++++- | ...+||.+.++ .... .. +......+..++..+++..+.+.. .|.|+.+++..+|
T Consensus 163 ~~~~~vl~~-P--~v~vsT~~vy~-~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~---~NdLe~~~~~~~p 226 (289)
T COG1947 163 PEKWYVLAK-P--GVGVSTKEVYK-DPEL--------TR-NTPKSEPLIAALSLENLKQIAPFL---INDLEKVALRLYP 226 (289)
T ss_pred CCceEEEEe-C--CCCCChHHHHc-CcCc--------cc-ccCCchhhhHHHhhhhHhhhcccc---ccchHHHHHHhCh
Confidence 344334333 3 33566666765 2111 11 456667777788888887776654 3679999998877
Q ss_pred CceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCcceEEeeccCC-HHHHHHHHHhhCC
Q psy11141 331 PIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLENT-VPLLLSTLVQYFP 389 (566)
Q Consensus 331 ~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV~~l~~~~~-~~~v~~~L~~~f~ 389 (566)
.+ .+....+++. | ...+.|||+||+||.+|+.+. ++++.+.+.+.++
T Consensus 227 ~v----------~~~~~~l~~~-g-a~~~~mSGSGstvF~l~~~~~~a~~~~~~l~~~~~ 274 (289)
T COG1947 227 EV----------KEALSELLEY-G-ALPARMSGSGSTVFALFDTEKEAQRVAEQLPKGVC 274 (289)
T ss_pred HH----------HHHHHHHhhc-c-cccceEecCCCcEEEEeCChHHHHHHHHHhhcccC
Confidence 44 2333444433 5 346799999999999998665 6777777775443
No 28
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.73 E-value=1.8e-16 Score=162.67 Aligned_cols=225 Identities=12% Similarity=0.083 Sum_probs=133.2
Q ss_pred ccceeecCCCceeEEEEEecCCCCccEEEEcCccchhhhhh---------h-hccCCccEEEEEEcCCCCccccccchhh
Q psy11141 106 IEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKKLAEQEKS---------S-REMADWKMHICSENNFPTAAGLASSAAG 175 (566)
Q Consensus 106 SLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~~~~~~~~~---------l-~~~~~~~v~I~s~nnIP~aaGLGSSAA~ 175 (566)
|+=..++ +|++.+|+..++ .+.++.-++..++.++.+ + ..+...+++|+++++||.++|||||||.
T Consensus 31 s~~~~i~---l~d~v~v~~~~~-~~~~i~~~~~~~p~~~~nl~~~a~~~~~~~~~~~~~~~i~i~~~IP~~~GLGsssa~ 106 (280)
T PRK14614 31 MIMQRVD---LCDEIEIALSDG-PGIRVTCGREGVPDGPGNIAWRAADALLDLSGREVGIDISITKNIPVAAGLGGGSSD 106 (280)
T ss_pred eEeEECC---CCeEEEEEECCC-CCEEEEeCCCCCCCCCCcHHHHHHHHHHHHhCCCCceEEEEEecCCCcCccHHHHHH
Confidence 3334555 899999886542 112232222223322111 1 2344457999999999999999999999
Q ss_pred HHHHHHHHHHHhCCC--HHHHHHHHHHccCCchhhhcCCeEEEEeCCCCCCCCCCCccccccccceeEEEccCCCCCCce
Q psy11141 176 YSCLVFTLAYALGLN--TSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSM 253 (566)
Q Consensus 176 aAAla~Aln~L~gL~--~eeLs~iAr~GSGSaarSi~GGfV~w~~~~~G~~~dg~~~~~~~~~~~s~a~~I~~~~~wp~L 253 (566)
+||++.|++++++.+ .+++.++|...++|++++++||+++. . | .|+. ..+++. -+++
T Consensus 107 ~~a~~~al~~~~~~~l~~~~l~~~a~~~G~Dv~~~l~gg~~~~-~---g---~ge~-----------~~~l~~---~~~~ 165 (280)
T PRK14614 107 AATVLMGVNELLGLGLSDERLMEIGVKLGADVPFFIFKKTALA-E---G---IGDK-----------LTAVEG---VPPL 165 (280)
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcceeeeCCcEEE-E---E---cCce-----------eEECCC---CCCc
Confidence 999999999999987 89999999887779999999999763 3 3 2432 445532 1455
Q ss_pred EEEEEEECCCCCCCCChHHHhhhccCCc-hHHHHHhhhccchHHHHHHHHHcCCHHHHHHHHHhchhhhhhcccccCCCc
Q psy11141 254 RVIILVVNDQAKSTSSTDGMQRTTLTST-LYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPI 332 (566)
Q Consensus 254 ~ivilVv~~~~K~vsST~~mr~~v~ts~-~~~~~v~~~~~~~v~~li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P~i 332 (566)
.++++.++ ..+ ||..+.+.+.... ........ .-..... +.++..+|++.+. ...
T Consensus 166 ~ivl~~p~---~~~-sT~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~ndle~~~--------------~~~---- 221 (280)
T PRK14614 166 WVVLVNPG---LHV-STAWVYQNLRLTSRKDLAIIPR-FFGSVAE-VCALLSNDLESVT--------------IGR---- 221 (280)
T ss_pred EEEEECCC---CCC-CHHHHHhcccccccCcchhhhh-hhhhHHH-HhhhcccCcHHHH--------------Hhc----
Confidence 55544433 234 4554433221100 00000000 0001111 1234445555442 211
Q ss_pred eeccccHHHHHHHHHHHHHhhCCceEEEEeCCCcceEEeeccCC-HHHHHHHHHhh
Q psy11141 333 VYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLENT-VPLLLSTLVQY 387 (566)
Q Consensus 333 ~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV~~l~~~~~-~~~v~~~L~~~ 387 (566)
.|...++++.+++ . | ..++.+|||||+|+++++++. .+++.+.|.+.
T Consensus 222 ---~p~l~~i~~~~~~---~-G-alga~lSGSG~tv~~l~~~~~~~~~~~~~l~~~ 269 (280)
T PRK14614 222 ---FPVIGEIKEELLA---A-G-ARGSLMSGSGSTVFGLFDDEAAARAAAEELSRE 269 (280)
T ss_pred ---ChHHHHHHHHHHh---C-C-CCEEEEeccccceEEEeCCHHHHHHHHHHhhhc
Confidence 2444455544443 3 6 457889999999999998655 56777777763
No 29
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.72 E-value=1.7e-16 Score=163.65 Aligned_cols=181 Identities=10% Similarity=0.018 Sum_probs=116.8
Q ss_pred ccCCccEEEEEEcCCCCccccccchhhHHHHHHHHHHHhCCC--HHHHHHHHHHccCCchhhhcCCeEEEEeCCCCCCCC
Q psy11141 149 EMADWKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLN--TSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSD 226 (566)
Q Consensus 149 ~~~~~~v~I~s~nnIP~aaGLGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~GSGSaarSi~GGfV~w~~~~~G~~~d 226 (566)
.+...+++|+++|+||+++|||||||++||++.++|++++++ ++||.++|...+|+++.++.||++. .. |.
T Consensus 75 ~g~~~~v~I~i~K~IP~gaGLGggSS~aAa~L~~ln~l~~~~ls~~eL~~lA~~lGaDvPffl~~g~a~-~~---G~--- 147 (288)
T PRK00650 75 TGITTPVSWRVVKQIPIGAGLAGGSSNAATALFALNQIFQTGLSDEELRSLAEKIGMDTPFFFSTGSAL-GV---GR--- 147 (288)
T ss_pred hCCCCCeEEEEeeCCCCcCCcCcchhHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCcchhhhcCceEE-EE---ec---
Confidence 344568999999999999999999999999999999999987 8999999999888999999999864 44 53
Q ss_pred CCCccccccccceeEEEccCCCCCCceEEEEEEECCCCCCCCChHHHhhhccCCchHHHHHhhhccchHHHHHHHHHcCC
Q psy11141 227 GNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRTTLTSTLYEHRVNTIVPSRCSGMEEALRARD 306 (566)
Q Consensus 227 g~~~~~~~~~~~s~a~~I~~~~~wp~L~ivilVv~~~~K~vsST~~mr~~v~ts~~~~~~v~~~~~~~v~~li~AL~~~D 306 (566)
|+. .++++. .+++.+++++|+.+ + ||..+++..+. . . ...
T Consensus 148 Ge~-----------l~~~~~---~~~~~~vlv~P~~~---v-sT~~ay~~~~~------~-~---~~~------------ 187 (288)
T PRK00650 148 GEK-----------IIALEE---SVSDRYVLYFSSEG---V-LTSRAFAYVQP------S-D---CSS------------ 187 (288)
T ss_pred CCE-----------EEECcC---CCCceEEEEeCCCC---C-ChHHHHHhhcc------c-c---cch------------
Confidence 442 445532 24566666655433 4 55555432110 0 0 000
Q ss_pred HHHHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCcceEEeeccCC-HHHHH-HHH
Q psy11141 307 FPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLENT-VPLLL-STL 384 (566)
Q Consensus 307 ~e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV~~l~~~~~-~~~v~-~~L 384 (566)
...+ ....|.|+++.+..+| +..++++.+.+.....| . .+.|||+||+||++++.++ .+++. +.+
T Consensus 188 ~~~~----~~~~Ndle~~~~~~~p-------~i~~~~~~l~~~~~~~~-~-~~~MSGSGst~F~l~~~~~~~~~~~~~~~ 254 (288)
T PRK00650 188 RKNL----EYTQNDLEKPVFRLRL-------DLKEKKHWLESLWAELP-V-HVGLTGSGATLFVRYPEILEKDPSYAAQI 254 (288)
T ss_pred hhHh----ccCCCchHHHHHHhCh-------HHHHHHHHHHhccccCC-C-eEEEeCcccCEEEEeCCHHHHHHHHHHHh
Confidence 0001 1124567777765554 34455544444321112 2 3569999999999997533 45555 555
Q ss_pred HhhCC
Q psy11141 385 VQYFP 389 (566)
Q Consensus 385 ~~~f~ 389 (566)
++.++
T Consensus 255 ~~~~~ 259 (288)
T PRK00650 255 QRAIT 259 (288)
T ss_pred Hhhhh
Confidence 55543
No 30
>TIGR01920 Shik_kin_archae shikimate kinase. This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.
Probab=99.72 E-value=7.4e-16 Score=156.83 Aligned_cols=217 Identities=13% Similarity=0.101 Sum_probs=135.6
Q ss_pred ceeecCCCceeEEEEEecCCCCccEEEEcCccch-hhh----hhh-hccCCccEEEEEEcCCCCccccccchhhHHHHHH
Q psy11141 108 PIEITFQRMHAKTSVALSPDFTEDKLWLNGKKLA-EQE----KSS-REMADWKMHICSENNFPTAAGLASSAAGYSCLVF 181 (566)
Q Consensus 108 SltLd~~~lyt~TtV~~s~~~~~d~i~lnG~~~~-~~~----~~l-~~~~~~~v~I~s~nnIP~aaGLGSSAA~aAAla~ 181 (566)
.++++ ++++++|+..++ +++.+.....+ ... ... ..+...+++|+++++||.++|||||||.++|++.
T Consensus 18 a~aI~---~~~~v~v~~~~~---~~~~~~~~~~~n~i~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~~a~~~ 91 (261)
T TIGR01920 18 AFGID---LWVEAKVREGDE---AGVSTYVRGNPRLIERILTAIRSKFGIVDGLEVEVESEIPAGSGLKSSSALVNALVE 91 (261)
T ss_pred EEEcc---CceEEEEEECCC---CceeeeecCChHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCCCcchHHHHHHHHHH
Confidence 35555 788888876553 23333211100 001 111 2344568999999999999999999999999999
Q ss_pred HHHHHhCCC--HHHHHHHHHHc--------cC---CchhhhcCCeEEEEeCCCCCCCCCCCccccccccceeEEEccCCC
Q psy11141 182 TLAYALGLN--TSEVSHIARQG--------SG---SACRSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISES 248 (566)
Q Consensus 182 Aln~L~gL~--~eeLs~iAr~G--------SG---SaarSi~GGfV~w~~~~~G~~~dg~~~~~~~~~~~s~a~~I~~~~ 248 (566)
|++++++++ .+++.++|++. .| +++.|+|||+++.. +. +. ....+++.
T Consensus 92 al~~~~~~~l~~~~l~~la~~~e~~~~~~~~~~~~D~~~~~~gG~~~~~----~~---~~----------~~~~~~~~-- 152 (261)
T TIGR01920 92 AVLKAKGVEIDDIDILRLGARLSKDAGLSVTGAFDDAAASYLGGIVITD----NR---RM----------KILKRDKL-- 152 (261)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHhCCEEEEe----CC---Cc----------eEEEecCC--
Confidence 999999987 89999999762 23 56899999997643 21 11 12233321
Q ss_pred CCCceEEEEEEECCCCCCCCChHHH-hhhccCCchHHHHHhhhccchHHHHHHHHHcCCHHHHHHHHHhchhhhhhcccc
Q psy11141 249 YWGSMRVIILVVNDQAKSTSSTDGM-QRTTLTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLD 327 (566)
Q Consensus 249 ~wp~L~ivilVv~~~~K~vsST~~m-r~~v~ts~~~~~~v~~~~~~~v~~li~AL~~~D~e~lgel~~~Dsn~LHa~~~~ 327 (566)
|++.+++++++.. . +|+.. +.. +.. .....+.+.++++++|+. ++|..|...+ +.
T Consensus 153 --~~~~~vv~~p~~~---~-tt~~~~~~~----------l~~-~~~~~~~~~~~~~~~~l~---~am~~n~~l~-~~--- 208 (261)
T TIGR01920 153 --EGCTAAVLVPKEG---E-RRENVDLNR----------FRR-ISPVVEEAFNLALRGEYL---KAMVLNGVAY-AT--- 208 (261)
T ss_pred --CCceEEEEECCCC---c-ccccccHHH----------hhh-cchHHHHHHHHHhhCCHH---HHHhhChHHh-HH---
Confidence 4455565555432 2 34222 222 222 345678888899999988 4444444322 11
Q ss_pred cCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCcceEEeeccCCHHHHHHHHHhh
Q psy11141 328 TYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLENTVPLLLSTLVQY 387 (566)
Q Consensus 328 ~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV~~l~~~~~~~~v~~~L~~~ 387 (566)
.+++ .. +++ +.+++. | ..++++|||||+|++|+++. +++.++|++.
T Consensus 209 -~lg~-----~~-~~i---~~a~~~-G-alga~lSGaG~sv~aL~~~~--~~v~~~~~~~ 254 (261)
T TIGR01920 209 -ALGY-----PL-EPA---SKALEA-G-AAAAGLSGKGPSYFALTEDP--EEAAEALMEF 254 (261)
T ss_pred -hhCC-----Ch-HHH---HHHHHc-C-CcEEeecCCCCeEEEEeCCH--HHHHHHHHhC
Confidence 1111 11 233 445443 7 57889999999999998755 6788888774
No 31
>TIGR00549 mevalon_kin mevalonate kinase. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.
Probab=99.72 E-value=5.9e-16 Score=156.83 Aligned_cols=179 Identities=21% Similarity=0.268 Sum_probs=122.8
Q ss_pred cEEEEEEcCCCCccccccchhhHHHHHHHHHHHhCCC--HHHHHHHHHHc--------cC-CchhhhcCCeEEEEeCCCC
Q psy11141 154 KMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLN--TSEVSHIARQG--------SG-SACRSMFGGFVRWKTLPEG 222 (566)
Q Consensus 154 ~v~I~s~nnIP~aaGLGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~G--------SG-SaarSi~GGfV~w~~~~~G 222 (566)
+++|+++++||.++|||||||.++|++.|++++++++ .++|.++|+.. +| +.++|+|||++.+.. +
T Consensus 78 ~~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~l~~~a~~~E~~~~G~~sG~D~~~~~~Gg~~~~~~---~ 154 (273)
T TIGR00549 78 PLEIEIDSEIPPGRGLGSSAAVAVALIRALADYFGSELSKEELAKLANEAEKIAHGKPSGIDTATSTYGGPVYFEK---G 154 (273)
T ss_pred CEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCchHhHHHHhcCCeEEEEc---C
Confidence 3999999999999999999999999999999999987 89999999754 23 689999999987754 2
Q ss_pred CCCCCCCccccccccceeEEEccCCCCCCceEEEEEEECCCCCCCCChHHHhhhc----cCCc-hHHHHHhhhccchHHH
Q psy11141 223 QQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRTT----LTST-LYEHRVNTIVPSRCSG 297 (566)
Q Consensus 223 ~~~dg~~~~~~~~~~~s~a~~I~~~~~wp~L~ivilVv~~~~K~vsST~~mr~~v----~ts~-~~~~~v~~~~~~~v~~ 297 (566)
++. .++..+ +++.++ +++.. .+. +|..+.+.+ +..+ .++...+. ...++.+
T Consensus 155 ---~~~-------------~~~~~~---~~~~lv--l~~tg-~~~-~T~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~ 210 (273)
T TIGR00549 155 ---EGE-------------FTKLIS---LDGYFV--IADTG-VSG-STKEAVARVRQLLERFPELIDSIMDA-IGELTLE 210 (273)
T ss_pred ---CCc-------------eeeccC---CCeEEE--EEECC-CCC-cHHHHHHHHHHHHHhCHHHHHHHHHH-HHHHHHH
Confidence 121 122111 234333 33332 233 455443321 2222 33334443 3467888
Q ss_pred HHHHHHcCCHHHHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCcceEEee
Q psy11141 298 MEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYV 372 (566)
Q Consensus 298 li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV~~l~ 372 (566)
++.||+++|++.|+++|..++..||+... ..|+..++++.+++. | ..++.++|||+.-++|+
T Consensus 211 ~~~al~~~d~~~lg~l~~~~~~~l~~~~v--------s~p~l~~l~~~~~~~----G-a~gaklsGaG~GG~~i~ 272 (273)
T TIGR00549 211 AKAALQDGDVESLGELMNINQGLLKALGV--------SHPKLDQLVETARKA----G-ALGAKLTGAGGGGCMIA 272 (273)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCC--------CcHHHHHHHHHHHHC----C-CceeeeccCCCCceEEe
Confidence 99999999999999999876667776422 245555555544443 5 46789999999888874
No 32
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.71 E-value=3.2e-16 Score=160.23 Aligned_cols=107 Identities=15% Similarity=0.119 Sum_probs=80.8
Q ss_pred CccceeecCCCceeEEEEEecCCCCccEEEEcCccchhh-hhhh---------h-ccCCccEEEEEEcCCCCccccccch
Q psy11141 105 GIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKKLAEQ-EKSS---------R-EMADWKMHICSENNFPTAAGLASSA 173 (566)
Q Consensus 105 dSLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~~~~~~-~~~l---------~-~~~~~~v~I~s~nnIP~aaGLGSSA 173 (566)
+|+=..++ ++++.+++..++ .+.++.++|..++.. ++++ + .+. .+++|+++++||+++||||||
T Consensus 27 ~s~~~~i~---l~D~l~i~~~~~-~~~~~~~~~~~~~~~~~~Nlv~~a~~~~~~~~~~-~~~~i~i~k~IP~~aGLGsss 101 (269)
T PRK14609 27 ETVFYPIP---LTDALEITVRSA-TKTSLTVSGIPIPGDPEDNLVVKAYNLLKKDFPL-PPVHIHLYKHIPIGAGLGGGS 101 (269)
T ss_pred eEEEEECC---CCcEEEEEEcCC-CcEEEEeCCCCCCCCccccHHHHHHHHHHHHcCC-CCeEEEEecCCCCCCcccHHH
Confidence 34445555 888888875443 235666677644421 1111 1 233 479999999999999999999
Q ss_pred hhHHHHHHHHHHHhCCC--HHHHHHHHHHccCCchhhhcCCeEEE
Q psy11141 174 AGYSCLVFTLAYALGLN--TSEVSHIARQGSGSACRSMFGGFVRW 216 (566)
Q Consensus 174 A~aAAla~Aln~L~gL~--~eeLs~iAr~GSGSaarSi~GGfV~w 216 (566)
|++||++.|+|++++++ .++|.++|...+++++.+++||.+..
T Consensus 102 s~aaa~l~al~~~~~~~l~~~~l~~la~~iGaDvpffl~g~~a~~ 146 (269)
T PRK14609 102 SDAAFMLKLLNDKFNLGLSDEELEAYAATLGADCAFFIRNKPVYA 146 (269)
T ss_pred HHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCceEEccCCCEEE
Confidence 99999999999999987 89999999987779999999998653
No 33
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.70 E-value=9.6e-16 Score=156.88 Aligned_cols=217 Identities=10% Similarity=0.080 Sum_probs=131.3
Q ss_pred CccceeecCCCceeEEEEEecCCCCccEEEEcCcc--chhhh--------hhh-hccCCccEEEEEEcCCCCccccccch
Q psy11141 105 GIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKK--LAEQE--------KSS-REMADWKMHICSENNFPTAAGLASSA 173 (566)
Q Consensus 105 dSLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~~--~~~~~--------~~l-~~~~~~~v~I~s~nnIP~aaGLGSSA 173 (566)
+|+=.+++ +|++.+++..++ +.+.+.+.. ++..+ ... ..+...+++|+++++||.++||||||
T Consensus 33 ~s~~~~i~---l~D~v~i~~~~~---~~~~i~~~~~~~~~~~N~v~~a~~~l~~~~~~~~~~~i~i~k~IP~gaGLGssS 106 (271)
T PRK00343 33 QTLFQFLD---WGDTLHFEVRDD---GEIRLLTPIPGVPEEDNLIVRAARLLQKATGTPLGADISLDKRLPMGGGLGGGS 106 (271)
T ss_pred eEEEEEcc---cceEEEEEECCC---CcEEEeCCCCCCCCcccHHHHHHHHHHHHhCCCCCeEEEEEcCCCCcCCCCcch
Confidence 46777777 888888875442 335554421 11111 111 23444589999999999999999999
Q ss_pred hhHHHHHHHHHHHhCCC--HHHHHHHHHHccCCchhhhcCCeEEEEeCCCCCCCCCCCccccccccceeEEEccCCCCCC
Q psy11141 174 AGYSCLVFTLAYALGLN--TSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWG 251 (566)
Q Consensus 174 A~aAAla~Aln~L~gL~--~eeLs~iAr~GSGSaarSi~GGfV~w~~~~~G~~~dg~~~~~~~~~~~s~a~~I~~~~~wp 251 (566)
|.+||++.|+|++++++ .+||.++|..++++++.++.||. .+.. |. |+ ..++++. +
T Consensus 107 s~aaa~l~al~~l~~~~ls~~el~~la~~igaDvp~~l~g~~-~~~~---g~---g~-----------~~~~l~~----~ 164 (271)
T PRK00343 107 SDAATTLVALNRLWQLGLSRDELAELGLKLGADVPVFVRGHA-AFAE---GI---GE-----------ILTPVDL----P 164 (271)
T ss_pred HHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCceEEecCCc-EEEE---ec---CC-----------EEEECCC----C
Confidence 99999999999999988 89999999988889777766665 4555 53 43 2456642 3
Q ss_pred ceEEEEEEECCCCCCCCChHHHhhhc-cCCchHHHHHhhhccchHHHHHHHHHcCCHHHHHHHHHhchhhhhhcccccCC
Q psy11141 252 SMRVIILVVNDQAKSTSSTDGMQRTT-LTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYP 330 (566)
Q Consensus 252 ~L~ivilVv~~~~K~vsST~~mr~~v-~ts~~~~~~v~~~~~~~v~~li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P 330 (566)
+..+++++++ ..++|.+.+++.. +.. . ....+..+...... |.|+.+.+..+|
T Consensus 165 ~~~~vl~~p~---~~~sT~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~--------------Ndle~~~~~~~P 218 (271)
T PRK00343 165 EKWYLVVKPG---VHISTAEIFSDPDLTRD--------T-PKISIADFLAGPFR--------------NDCEPVVRKRYP 218 (271)
T ss_pred CcEEEEEeCC---CCcChHHHHhhhhhccC--------C-ChhhHHHHHhcccc--------------CCHHHHHHHhCh
Confidence 4444444432 2344444443321 110 0 01111122222112 334444443333
Q ss_pred CceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCcceEEeeccCC-HHHHHHHHHhhCC
Q psy11141 331 PIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLENT-VPLLLSTLVQYFP 389 (566)
Q Consensus 331 ~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV~~l~~~~~-~~~v~~~L~~~f~ 389 (566)
+..++.+. +.+ .|+ +.|||+|||||++|.+++ .+++.+.|++.|+
T Consensus 219 -------~~~~~~~~---l~~-~ga---~~mSGSG~tvF~l~~~~~~a~~~~~~l~~~~~ 264 (271)
T PRK00343 219 -------EVAQALSW---LLE-YAP---SRMTGTGACVFAEFDTEAEAEQVLAQLPEWLQ 264 (271)
T ss_pred -------HHHHHHHH---HHh-CCC---eEEeccccceEEEcCCHHHHHHHHHHhhhhcc
Confidence 44444443 332 363 679999999999997543 6778888877664
No 34
>PRK03817 galactokinase; Provisional
Probab=99.69 E-value=1e-15 Score=161.38 Aligned_cols=211 Identities=18% Similarity=0.151 Sum_probs=132.3
Q ss_pred ccEEEEEEcCCCCccccccchhhHHHHHHHHHHHhCCC--HHHHHHHHHHccCC---chhhhcCCeEEEEeCCCCCCCCC
Q psy11141 153 WKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLN--TSEVSHIARQGSGS---ACRSMFGGFVRWKTLPEGQQSDG 227 (566)
Q Consensus 153 ~~v~I~s~nnIP~aaGLGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~GSGS---aarSi~GGfV~w~~~~~G~~~dg 227 (566)
.+++|+++++||.++|||||||.++|++.|++++++++ .+++.++|.+++.. .+..++++++... |. .+.
T Consensus 85 ~~~~i~i~s~iP~~~GLgSSaa~~va~~~al~~~~~~~~~~~~l~~~a~~~E~~~~g~~~g~~D~~~~~~----g~-~~~ 159 (351)
T PRK03817 85 GGVKGKVSSNLPIGAGLSSSASLEVAVAYALNEAYNLNLSKLELALLAREAENEFVGVPCGIMDQFAVAF----GK-KDH 159 (351)
T ss_pred CCeEEEEeCCCCCCCCcCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcccccCCCCcCchhhheee----cc-CCE
Confidence 57999999999999999999999999999999999987 89999999877653 1233344443211 10 000
Q ss_pred CCccccccccceeEEEccCCCCCCceEEEEEEECCCCCCCCCh------HHHhh---hccC-------C-------chH-
Q psy11141 228 NGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSST------DGMQR---TTLT-------S-------TLY- 283 (566)
Q Consensus 228 ~~~~~~~~~~~s~a~~I~~~~~wp~L~ivilVv~~~~K~vsST------~~mr~---~v~t-------s-------~~~- 283 (566)
-.+++.. .....+++.+ ++++++++.+.... ..+++ ..+++ .++. . +.+
T Consensus 160 ~~~~~~~---~~~~~~~~~~---~~~~~vv~~sg~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 232 (351)
T PRK03817 160 AIFLDTM---TLEYEYVPFP---EDYEILVFDTGVKR-ELASSEYNERRQECEEALKILGKKSSKEVTEEDLSKLPPLLR 232 (351)
T ss_pred EEEEecC---CCceEEEecC---CCcEEEEEeCCCcc-ccccchhHHHHHHHHHHHHHhCccchhcCCHHHHHhCCHHHH
Confidence 0000000 0112233211 35665655543222 22221 11111 1110 0 001
Q ss_pred ---HHHHhhhccchHHHHHHHHHcCCHHHHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEE
Q psy11141 284 ---EHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAY 360 (566)
Q Consensus 284 ---~~~v~~~~~~~v~~li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~ 360 (566)
.+.+. +.+++..++.||+++|++.|+++|......||+.++- -.|+...+++.+.+. | ..++.
T Consensus 233 ~~~~~~v~--e~~r~~~~~~al~~~d~~~lg~l~~~s~~~l~~~~~~-------s~p~ld~l~~~a~~~----G-alGak 298 (351)
T PRK03817 233 KRAGYVLR--ENERVLKVRDALKEGDIETLGELLTESHWDLADNYEV-------SCEELDFFVEFALEL----G-AYGAR 298 (351)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcCC-------CcHHHHHHHHHHHHc----C-CCEEE
Confidence 11222 2457889999999999999999998766678876552 245555666555442 6 56789
Q ss_pred EeCCC--cceEEeeccCCHHHHHHHHHhhCC
Q psy11141 361 TFDAG--PNACLYVLENTVPLLLSTLVQYFP 389 (566)
Q Consensus 361 tsGAG--PnV~~l~~~~~~~~v~~~L~~~f~ 389 (566)
+|||| |+|++++++++.+++.+.+++.|.
T Consensus 299 lsGaG~Gg~vlal~~~~~~~~~~~~l~~~~~ 329 (351)
T PRK03817 299 LTGAGFGGSAIALVDKGKFESIGEELLEEYK 329 (351)
T ss_pred EecCCCCeEEEEEEchHHHHHHHHHHHHHHH
Confidence 99999 999999988888888888887653
No 35
>TIGR00131 gal_kin galactokinase. The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.
Probab=99.66 E-value=6.3e-15 Score=157.51 Aligned_cols=252 Identities=17% Similarity=0.126 Sum_probs=149.4
Q ss_pred ccCCCccceeecCCCceeEEEEEecCCCCccEEEEcCcc-----------chhh--h-----hh----h----hcc--CC
Q psy11141 101 SELNGIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKK-----------LAEQ--E-----KS----S----REM--AD 152 (566)
Q Consensus 101 lP~ndSLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~~-----------~~~~--~-----~~----l----~~~--~~ 152 (566)
..+.+.|+++++ .++.+++...++ +.+.+.... .+.. + .. + ..+ ..
T Consensus 35 y~g~~vl~~AI~---~~~~v~~~~~~~---~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~w~~y~~~~~~~~~~~~~~~~ 108 (386)
T TIGR00131 35 YNDGSVLPCAID---FGTLCAVAVRDD---KNVRIYLANADNKFAERSLDLPLDGSEVSDWANYFKGVLHVAQERFNSFP 108 (386)
T ss_pred eCCceEEeeEee---ccEEEEEEECCC---CeEEEEECCCCCcceEEECCCCCCCCCCCCcHhHHHHHHHHHHHhcCCCC
Confidence 367889999999 688888775543 233321110 0000 0 00 0 111 23
Q ss_pred ccEEEEEEcCCCCccccccchhhHHHHHHHHHHHhCCC--HHHHHHHHHHc----cC------CchhhhcCCe--EEEEe
Q psy11141 153 WKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLN--TSEVSHIARQG----SG------SACRSMFGGF--VRWKT 218 (566)
Q Consensus 153 ~~v~I~s~nnIP~aaGLGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~G----SG------SaarSi~GGf--V~w~~ 218 (566)
.+++|.+.++||.++|||||||..+|++.|++++++++ .++|.++|..+ .| +...|++||. +++..
T Consensus 109 ~g~~i~i~s~iP~gsGLgSSAA~~vA~~~al~~~~~~~~~~~~l~~~a~~~E~~~~G~~~g~~Dq~~s~~G~~~~~l~~~ 188 (386)
T TIGR00131 109 LGADIVCSGNVPTGSGLSSSAAFECAVGAVLQNMGHLPLDSKQILLRIQVAENHFVGVNCGIMDQAASVLGKEDHALLVE 188 (386)
T ss_pred CceEEEEECCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCccCCCcchHHHHHHHhccCCcEEEEE
Confidence 58999999999999999999999999999999999987 88999988654 22 4578999992 33433
Q ss_pred CCCCCCCCCCCccccccccceeEEEccCCCCCCceEEEEEEECCCCCCCCC---hH-----------------HHhhhcc
Q psy11141 219 LPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSS---TD-----------------GMQRTTL 278 (566)
Q Consensus 219 ~~~G~~~dg~~~~~~~~~~~s~a~~I~~~~~wp~L~ivilVv~~~~K~vsS---T~-----------------~mr~~v~ 278 (566)
. .+ ....+++.+. .++.++++....+..+..+ +. .+|...+
T Consensus 189 ---~---~~-----------~~~~~~~~~~--~~~~lvv~~s~~~~~t~~~~y~~r~~e~~~a~~~l~~~~~~~lr~~~~ 249 (386)
T TIGR00131 189 ---C---RS-----------LKATPFKFPQ--LGIAFVIANTNVKRTLAPSNYNTRRQECTTAANFLAATDKGALRDFMN 249 (386)
T ss_pred ---c---CC-----------CceeeecCCC--CCeEEEEEeCCCccccccchhHHHHHHHHHHHHHhccccccchhhCCH
Confidence 1 11 1123443210 1455444443222211101 10 1111100
Q ss_pred CC-ch---------------HHHHHhhhccchHHHHHHHHHcCCHHHHHHHHHhchhhhhhcccccCCCceeccccHHHH
Q psy11141 279 TS-TL---------------YEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSI 342 (566)
Q Consensus 279 ts-~~---------------~~~~v~~~~~~~v~~li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~I 342 (566)
.. .. ..+.+. ...|+..+++||+++|++.||++|......|...+ ....|+...
T Consensus 250 ~~~~~~~~~~~~~~~~~~~r~~h~v~--e~~rv~~~~~al~~~d~~~lG~lm~~sh~~l~~~~-------~vs~peld~- 319 (386)
T TIGR00131 250 EYFARYIARLTKMLPLVEERAKHVVS--ENLRVLKAVKAMKDNDFKQFGALMNESHASCDDDY-------ECTCPEIDE- 319 (386)
T ss_pred HHHhhhHhhHhhcCHHHHhhHheeeh--HHHHHHHHHHHHHhCcHHHHHHHHHHhhHHHHHhc-------CCCCHHHHH-
Confidence 00 00 011111 23457789999999999999999864433333221 122343333
Q ss_pred HHHHHHHHHhhCCceEEEEeCCCc--ceEEeeccCCHHHHHHHHHhhCCC
Q psy11141 343 VRFVHEFNTVVGETKVAYTFDAGP--NACLYVLENTVPLLLSTLVQYFPP 390 (566)
Q Consensus 343 i~~v~~l~~~~G~~~~a~tsGAGP--nV~~l~~~~~~~~v~~~L~~~f~~ 390 (566)
+++......| ..++-++|||+ .++++++++..+++.++|.+.|+.
T Consensus 320 --lv~~a~~~~G-AlGakltGaG~GG~vial~~~~~~~~v~~~~~~~y~~ 366 (386)
T TIGR00131 320 --LVCSAALVNG-SGGSRMTGAGFGGCTVHLVPNENVDKVRQAVADKYPK 366 (386)
T ss_pred --HHHHHHhcCC-CcEEEEecCCCceEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 4444333347 56889999986 888889888888999999887743
No 36
>PRK05322 galactokinase; Provisional
Probab=99.65 E-value=8.2e-15 Score=157.00 Aligned_cols=205 Identities=17% Similarity=0.134 Sum_probs=134.3
Q ss_pred ccEEEEEEcCCCCccccccchhhHHHHHHHHHHHhCCC--HHHHHHHHHHc--------cC--CchhhhcCCe--EEEEe
Q psy11141 153 WKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLN--TSEVSHIARQG--------SG--SACRSMFGGF--VRWKT 218 (566)
Q Consensus 153 ~~v~I~s~nnIP~aaGLGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~G--------SG--SaarSi~GGf--V~w~~ 218 (566)
.+++|.+.++||.++|||||||..+|++.|++++++++ +++|.++|... +| +...|.+||. +++-.
T Consensus 111 ~g~~i~i~s~iP~gsGLgSSAA~~va~~~al~~~~~~~l~~~~la~~a~~~E~~~~G~~sG~mDq~as~~G~~~~~~~~d 190 (387)
T PRK05322 111 HGFDILIYGNIPNGAGLSSSASIELLTGVILKDLFNLDLDRLELVKLGQKTENEFIGVNSGIMDQFAIGMGKKDHAILLD 190 (387)
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhccCCCCcchHHHHHHHhccCCeEEEEe
Confidence 58999999999999999999999999999999999988 88999999654 34 6688999983 23322
Q ss_pred CCCCCCCCCCCccccccccceeEEEccCCCCCCceEEEEEEECCCCCCCCC----------h-HHHhhhccC--------
Q psy11141 219 LPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSS----------T-DGMQRTTLT-------- 279 (566)
Q Consensus 219 ~~~G~~~dg~~~~~~~~~~~s~a~~I~~~~~wp~L~ivilVv~~~~K~vsS----------T-~~mr~~v~t-------- 279 (566)
. +..+ ....+++ +.++. ++|++...+.... + ++.+.+...
T Consensus 191 ---~---~~~~---------~~~~~~~----~~~~~--lvv~dsg~~~~~~~~~yn~r~~e~~~a~~~l~~~~~~~~l~~ 249 (387)
T PRK05322 191 ---C---NTLE---------YEYVPLD----LGDYV--IVIMNTNKRRELADSKYNERRAECEKALEELQKKLDIKSLGE 249 (387)
T ss_pred ---c---CCCc---------eEEeccC----CCCeE--EEEEECCCccccCcchhhHHHHHHHHHHHHHhhhcCccchhc
Confidence 1 1111 1123332 12333 3444444432211 1 222111000
Q ss_pred -C-chHHH------------HHhh--hccchHHHHHHHHHcCCHHHHHHHHHhchhhhhhcccccCCCceeccccHHHHH
Q psy11141 280 -S-TLYEH------------RVNT--IVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIV 343 (566)
Q Consensus 280 -s-~~~~~------------~v~~--~~~~~v~~li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii 343 (566)
. ..+.. ++.. ....++..++.||+++|++.|+++|..+...||+.++-+. |+...++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~r~~h~v~e~~r~~~~~~al~~~d~~~lg~lm~~sh~~L~~~y~~s~-------~eld~lv 322 (387)
T PRK05322 250 LTEEEFDEYSYLIKDETLLKRARHAVTENQRTLKAVKALKAGDLEKFGRLMNASHVSLRDDYEVTG-------LELDTLV 322 (387)
T ss_pred CCHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhHHHHhhhcCCC-------HhHHHHH
Confidence 0 01111 1100 0136789999999999999999999877777998777432 3444555
Q ss_pred HHHHHHHHhhCCceEEEEeCCCc--ceEEeeccCCHHHHHHHHHhhCC
Q psy11141 344 RFVHEFNTVVGETKVAYTFDAGP--NACLYVLENTVPLLLSTLVQYFP 389 (566)
Q Consensus 344 ~~v~~l~~~~G~~~~a~tsGAGP--nV~~l~~~~~~~~v~~~L~~~f~ 389 (566)
+.+.+ ..| ..++.++|||| +|+++++.+..+++.+.|.+.|.
T Consensus 323 ~~a~~---~~G-a~garlsGaG~GG~vial~~~~~~~~~~~~l~~~y~ 366 (387)
T PRK05322 323 EAAWK---QEG-VLGARMTGAGFGGCAIAIVKKDKVEAFKENVGKAYE 366 (387)
T ss_pred HHHHh---cCC-ccEEEEecCCCceEEEEEEcHHHHHHHHHHHHHHHH
Confidence 44432 236 56789999999 88889888888888888877654
No 37
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.65 E-value=1.3e-14 Score=153.90 Aligned_cols=213 Identities=14% Similarity=0.129 Sum_probs=139.4
Q ss_pred ccEEEEEEcCCCCc----cccccchhhHHHHHHHHHHHhCCC--HHHHHHHHHH------c--c-CCchhhhcCCeEEEE
Q psy11141 153 WKMHICSENNFPTA----AGLASSAAGYSCLVFTLAYALGLN--TSEVSHIARQ------G--S-GSACRSMFGGFVRWK 217 (566)
Q Consensus 153 ~~v~I~s~nnIP~a----aGLGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~------G--S-GSaarSi~GGfV~w~ 217 (566)
.+++|++++++|.+ +|||||||..+|++.|++++++++ .+++.++|.. | | +|.+.|+|||++.+.
T Consensus 99 ~g~~~~i~s~ip~~~g~k~GLGSSAA~~Va~~~Al~~~~~~~l~~~~l~~lA~~~E~~~~g~~sg~D~~a~~~GG~i~~~ 178 (358)
T TIGR01220 99 PALHLSVSSRLDEADGRKYGLGSSGAVTVATVKALNAFYDLELSNDEIFKLAMLATAELQPKGSCGDIAASTYGGWIAYS 178 (358)
T ss_pred CceEEEEecCCCCcCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhCCCCCcchhhhhhhCCEEEEe
Confidence 46999999999995 699999999999999999999987 8889998843 2 2 378999999998876
Q ss_pred eCCCCCCCCCCCccccccc------------cceeEEEccCCCCCCceEEEEEEECCCCCCCCChHHHhhhc---cC-Cc
Q psy11141 218 TLPEGQQSDGNGDIGRKQC------------ELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRTT---LT-ST 281 (566)
Q Consensus 218 ~~~~G~~~dg~~~~~~~~~------------~~s~a~~I~~~~~wp~L~ivilVv~~~~K~vsST~~mr~~v---~t-s~ 281 (566)
+ . +. +|+.+... .....++++.+ ++++++++- .. .+.+|++.++.+. .+ ..
T Consensus 179 ~---~---~~-~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~---~~~~l~v~~--tg-~~~~T~~~v~~V~~~~~~~~~ 245 (358)
T TIGR01220 179 T---F---DH-DWVLQLARRVGVDRTLKAPWPGLSIRPLPAP---KGLTLLIGW--TG-SPASTASLVSDVHRRKWRGSA 245 (358)
T ss_pred c---C---CH-HHHhhhhhccchhhhhccCCCccceeECCCC---CCCEEEEEe--CC-CCcCcHHHHHHHHHHhhcChH
Confidence 5 2 11 11100000 00124555421 245444332 22 2333443333221 22 23
Q ss_pred hHHHHHhhhccchHHHHHHHHHcCCHHHHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEE
Q psy11141 282 LYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYT 361 (566)
Q Consensus 282 ~~~~~v~~~~~~~v~~li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~t 361 (566)
.++.+++. ....+.+++++|+++|++.|+++|..++..|+++.... ++.+.+|...++++.+++. | . ++.+
T Consensus 246 ~~~~~l~~-~~~i~~~~~~al~~~d~~~lg~~~~~~~~lL~~l~~~~--~~~vs~~~l~~li~~a~~~----g-a-~aKl 316 (358)
T TIGR01220 246 SYQRFLET-STDCVESAITAFETGDITSLQKEIRRNRQELARLDDEV--GVGIETEKLKALCDAAEAY----G-G-AAKP 316 (358)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhccc--CCCcCCHHHHHHHHHHhhc----C-c-eecC
Confidence 46666666 67788999999999999999999998888888764422 3444566666666555443 5 3 6888
Q ss_pred eCCCcce--EEeecc-CCHHHHHHHHHhh
Q psy11141 362 FDAGPNA--CLYVLE-NTVPLLLSTLVQY 387 (566)
Q Consensus 362 sGAGPnV--~~l~~~-~~~~~v~~~L~~~ 387 (566)
+|||-.- ++++.. .+.+++.+++++.
T Consensus 317 sGAGgGg~~ial~~~~~~~~~~~~~~~~~ 345 (358)
T TIGR01220 317 SGAGGGDCGIAILDAEADITHVRQRWETA 345 (358)
T ss_pred CCCCCcCEEEEEeCCchhHHHHHHHHHHC
Confidence 9888654 445543 3466777777765
No 38
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=99.65 E-value=9.7e-15 Score=151.74 Aligned_cols=239 Identities=19% Similarity=0.271 Sum_probs=156.0
Q ss_pred CCCccceeecCCCceeEEEEEecCCCCccEEEEcCccchhh-----------h---hhh-hcc---CCccEEEEEEcCCC
Q psy11141 103 LNGIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKKLAEQ-----------E---KSS-REM---ADWKMHICSENNFP 164 (566)
Q Consensus 103 ~ndSLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~~~~~~-----------~---~~l-~~~---~~~~v~I~s~nnIP 164 (566)
+...|+++++ .+.+++++.+++ ..++++....... . +.+ ++. ...++++++++++|
T Consensus 20 G~pAI~~aI~---~~~~v~~~~s~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~e~~~~~~~~~~~l~I~S~iP 93 (307)
T COG1577 20 GYPAIAAAID---LRVTVTISESDS---NKIVIESSDLKSSTLERDEDEGYIQAAVRLASELLNQSSLKPFSLEIDSEIP 93 (307)
T ss_pred CCchhheeee---eeEEEEEEecCC---CcEEEeccCCCCccccccccchHHHHHHHHHHHHhcccCCCCeEEEEecCCC
Confidence 5678999999 788888887653 3455544321111 0 111 122 24679999999999
Q ss_pred CccccccchhhHHHHHHHHHHHhCCC--HHHHHHHHH------Hc--cC-CchhhhcCCeEEEEeCCCCCCCCCCCcccc
Q psy11141 165 TAAGLASSAAGYSCLVFTLAYALGLN--TSEVSHIAR------QG--SG-SACRSMFGGFVRWKTLPEGQQSDGNGDIGR 233 (566)
Q Consensus 165 ~aaGLGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr------~G--SG-SaarSi~GGfV~w~~~~~G~~~dg~~~~~~ 233 (566)
.++|||||||+.+|++.|++++||.+ .+++.++|. +| || |++=+.|||++.+.+ + .+
T Consensus 94 ~g~GLGSSAAVsva~i~al~~~~g~~ls~~~l~~la~~~e~~vqG~~Sg~D~a~~~~gg~v~~~~---~-----~~---- 161 (307)
T COG1577 94 IGAGLGSSAAVSVAVIKALSAYFGVELSPEELAKLANKVELIVQGKASGIDIATITYGGLVAFKK---G-----FD---- 161 (307)
T ss_pred CCCCccHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCCcccceEEEeCCEEEEec---C-----CC----
Confidence 99999999999999999999999987 889999994 33 32 678899999997765 3 12
Q ss_pred ccccceeEEEccCCCCCCceEEEEEEECCCCCCCCChHHHhhhc----cC-CchHHHHHhhhccchHHHHHHHHHcCCHH
Q psy11141 234 KQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRTT----LT-STLYEHRVNTIVPSRCSGMEEALRARDFP 308 (566)
Q Consensus 234 ~~~~~s~a~~I~~~~~wp~L~ivilVv~~~~K~vsST~~mr~~v----~t-s~~~~~~v~~~~~~~v~~li~AL~~~D~e 308 (566)
.+++.. .|.. .++|. +..... ||..+.+.+ +. ...++..++. ....+.++..+|+++|++
T Consensus 162 -------~~~l~~--~~~~---~~~I~-~tg~~~-sT~e~V~~V~~l~~~~~~~~~~~~~~-ig~~~~~a~~al~~~d~e 226 (307)
T COG1577 162 -------FEKLEI--ELLG---TLVIG-DTGVPG-STKELVAGVAKLLEEEPEVIDPILDA-IGELVQEAEAALQTGDFE 226 (307)
T ss_pred -------cccccc--ccCC---eEEEE-EcCCcC-cHHHHHHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHhcccHH
Confidence 233422 1222 22333 333333 565443322 11 3346666666 568899999999999999
Q ss_pred HHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCcceEEeeccCC---HHHHHHHHH
Q psy11141 309 RFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLENT---VPLLLSTLV 385 (566)
Q Consensus 309 ~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV~~l~~~~~---~~~v~~~L~ 385 (566)
.|+++|..++..|.+..- .+.++.++++..+.. | +.++.++|||-.-++|+.-++ .+.+...+.
T Consensus 227 ~lgelm~~nq~LL~~LgV-----------s~~~L~~lv~~a~~~-G-a~gaKlTGAGgGGc~IaL~~~~~~~~~l~~~~~ 293 (307)
T COG1577 227 ELGELMNINQGLLKALGV-----------STPELDELVEAARSL-G-ALGAKLTGAGGGGCIIALAKNEEIAETLSNRLE 293 (307)
T ss_pred HHHHHHHHHHHHHHhcCc-----------CcHHHHHHHHHHHhc-C-ccccccccCCCCceEEEEeccchHHHHHHHHHH
Confidence 999999887777765432 234445555555543 6 456899999876666654443 334444444
Q ss_pred hh
Q psy11141 386 QY 387 (566)
Q Consensus 386 ~~ 387 (566)
+.
T Consensus 294 ~~ 295 (307)
T COG1577 294 KA 295 (307)
T ss_pred hc
Confidence 43
No 39
>KOG1537|consensus
Probab=99.65 E-value=1.4e-15 Score=152.13 Aligned_cols=211 Identities=18% Similarity=0.167 Sum_probs=154.4
Q ss_pred CccEEEEEEcCCCCccccccchhhHHHHHHHHHHHhCCC--HHH----HHHHH---------HHc---------------
Q psy11141 152 DWKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLN--TSE----VSHIA---------RQG--------------- 201 (566)
Q Consensus 152 ~~~v~I~s~nnIP~aaGLGSSAA~aAAla~Aln~L~gL~--~ee----Ls~iA---------r~G--------------- 201 (566)
+..-++++.|-||.++|+|||+++..|++...|+..+|+ +.. -.-++ ..|
T Consensus 92 p~~Tk~hvtNPiplgrGigssgta~~aGv~l~ne~a~LGlsk~~mldy~lmierhpdn~~a~mmGgf~GSflr~l~e~E~ 171 (355)
T KOG1537|consen 92 PITTKKHVTNPIPLGRGIGSSGTAKMAGVRLVNESADLGLSKGSMLDYSLMIERHPDNAVAEMMGGFLGSFLRALLESEA 171 (355)
T ss_pred ccceeeeecCCccccccccchhhhhhhhheecchHhhcCCccccchhHHHHHhhChHHHHHHHHhhHHHHHHHHhCHhhh
Confidence 344678899999999999999999999999999886554 111 11111 111
Q ss_pred --cC----CchhhhcCCeEEEEeCCCCCCCCCCCccccccccceeEEEccCCCCC-CceEEEEEEECCCCCCCCChHHHh
Q psy11141 202 --SG----SACRSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYW-GSMRVIILVVNDQAKSTSSTDGMQ 274 (566)
Q Consensus 202 --SG----SaarSi~GGfV~w~~~~~G~~~dg~~~~~~~~~~~s~a~~I~~~~~w-p~L~ivilVv~~~~K~vsST~~mr 274 (566)
+| +..+.+.|||+....+||-. -| ...+++ | +++++++++++++. +|+.||
T Consensus 172 ~~~~~~ad~ilp~~~gg~~li~~lpP~d--lg------------~~~r~p----w~~~lk~i~viP~Fel----~T~k~R 229 (355)
T KOG1537|consen 172 KVSGYHADNILPAIMGGFVLIRNLPPLD--LG------------KPLRFP----WDKDLKFILVIPDFEL----PTKKMR 229 (355)
T ss_pred hhcCCCHHHhcccccCCeeeecCCCccc--cc------------ccccCC----CCccceEEEEeccccc----cchhhh
Confidence 22 34789999998766533220 11 123443 5 68999999988875 799999
Q ss_pred hhccCCchHHHHHhhhccchHHHHHHHHHcC-CHHHHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhh
Q psy11141 275 RTTLTSTLYEHRVNTIVPSRCSGMEEALRAR-DFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVV 353 (566)
Q Consensus 275 ~~v~ts~~~~~~v~~~~~~~v~~li~AL~~~-D~e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~ 353 (566)
..++|+....+.+- +.+|++.+..|+.++ |--.++...|+| +.|+++|. .++|..+.|...+...-. -
T Consensus 230 ~vLPt~yp~~d~V~--NlqrlA~LttAl~~~p~n~~L~y~~m~D--kvhqPyRa------~LIPGl~~il~~~~p~t~-p 298 (355)
T KOG1537|consen 230 AVLPTEYPMVDHVW--NLQRLAALTTALLEGPDNVMLGYALMSD--KVHQPYRA------PLIPGLEAILKAALPATY-P 298 (355)
T ss_pred hhcCccccceeeee--cHHHHHHHHHHHhcCCCchhhhhhhhhc--cccCcccc------ccCccHHHHHHhhCcccC-C
Confidence 99999887777665 489999999999998 777777777765 89998884 678988888876655422 2
Q ss_pred CCceEEEEeCCCcceEEeeccCCHHHHHHHHHhhCCCCCCCCCcc
Q psy11141 354 GETKVAYTFDAGPNACLYVLENTVPLLLSTLVQYFPPSSGISAPY 398 (566)
Q Consensus 354 G~~~~a~tsGAGPnV~~l~~~~~~~~v~~~L~~~f~~~~~~~~~~ 398 (566)
| ..+..+||||||+.++.+ ++-++|.+.|.+.|-+.+ ..|+|
T Consensus 299 G-l~GiclSGAGPT~lAlat-enf~eI~~~mv~~F~K~G-~kcs~ 340 (355)
T KOG1537|consen 299 G-LFGICLSGAGPTALALAT-ENFQEIGEKMVEAFWKVG-HKCSV 340 (355)
T ss_pred c-eeeEEecCCCCeeEEEec-CcHHHHHHHHHHHHHhhC-ceeee
Confidence 5 556788999999999987 566778888888887766 34544
No 40
>PRK00555 galactokinase; Provisional
Probab=99.64 E-value=1e-14 Score=155.01 Aligned_cols=225 Identities=16% Similarity=0.120 Sum_probs=143.2
Q ss_pred ccEEEEEEcCCCCccccccchhhHHHHHHHHHHHhCCC--HHHHHHHHHHc--------cC--CchhhhcCCe--EEEEe
Q psy11141 153 WKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLN--TSEVSHIARQG--------SG--SACRSMFGGF--VRWKT 218 (566)
Q Consensus 153 ~~v~I~s~nnIP~aaGLGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~G--------SG--SaarSi~GGf--V~w~~ 218 (566)
.+++|.++++||.++|||||||..+|++.|++++++++ .+++.++|... +| +...|+|||. +++..
T Consensus 90 ~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~~~~~~~~~~~la~~a~~aE~~~~G~~~G~~Dq~as~~G~~~~~~~~d 169 (363)
T PRK00555 90 PGGAMSITSDVEIGSGLSSSAALECAVLGAVGAATGTRIDRLEQARLAQRAENEYVGAPTGLLDQLAALFGAPKTALLID 169 (363)
T ss_pred CCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCChhHHHHHHhCCCCeEEEEE
Confidence 48999999999999999999999999999999999987 88999999543 45 6677999975 33333
Q ss_pred CCCCCCCCCCCccccccccceeEEEccCCCCCCceEEEEEEECCCCCCCCChHH-------Hhh---hccCC------c-
Q psy11141 219 LPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTDG-------MQR---TTLTS------T- 281 (566)
Q Consensus 219 ~~~G~~~dg~~~~~~~~~~~s~a~~I~~~~~wp~L~ivilVv~~~~K~vsST~~-------mr~---~v~ts------~- 281 (566)
.. + . ...+++.+..++++. +++++...+...++.. ++. .+.+. +
T Consensus 170 ---~~--~-~-----------~~~~v~~~~~~~~~~--lvv~~s~~~~~~~~~~y~~rr~~~~~~~~~~~~~~lr~~~~~ 230 (363)
T PRK00555 170 ---FR--D-L-----------TVRPVAFDPDAAGVV--LLLMDSRARHRHAGGEYAARRASCERAAADLGVSSLRAVQDR 230 (363)
T ss_pred ---cC--C-C-----------cEEEeccCCCcCceE--EEEEcCCCcccccchhhHHHHHHHHHHHHHhCccchhcCCHH
Confidence 11 1 1 123443211122333 3444443322211111 110 01100 0
Q ss_pred ---------------hHHHHHhhhccchHHHHHHHHHcCCHHHHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHH
Q psy11141 282 ---------------LYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFV 346 (566)
Q Consensus 282 ---------------~~~~~v~~~~~~~v~~li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v 346 (566)
...+.++ ...++..+++||+++|++.|+++|. +.|+.+++.+ ..-.|+...+++
T Consensus 231 ~~~~~~~~~~~~~~~r~~h~~~--e~~~v~~~~~al~~gd~~~lg~lm~----~~h~~lr~~~---~vS~~~ld~l~~-- 299 (363)
T PRK00555 231 GLAALGAIADPIDARRARHVLT--ENQRVLDFAAALADSDFTAAGQLLT----ASHASMRDDF---EITTERIDLIAD-- 299 (363)
T ss_pred HHHHHHhcCChHHHHHHHHHHH--HHHHHHHHHHHHHcCCHHHHHHHHH----HhhHHHHhhc---CCCChhHHHHHH--
Confidence 0111222 1358899999999999999999984 5677776321 111244444443
Q ss_pred HHHHHhhCCceEEEEeCC--CcceEEeeccCCHHHHHHHHHhhCCCCCCCCCccccCcccccCCCCCCCCCCCCCCCCCc
Q psy11141 347 HEFNTVVGETKVAYTFDA--GPNACLYVLENTVPLLLSTLVQYFPPSSGISAPYIRGLEYLNILPPVQLPSFTPQPAGLL 424 (566)
Q Consensus 347 ~~l~~~~G~~~~a~tsGA--GPnV~~l~~~~~~~~v~~~L~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (566)
..++. | ..++.+||| ||+++++++.+..+++.+.|++.|.+.....
T Consensus 300 -~a~~~-G-a~GaklsGaG~Gg~vial~~~~~~~~~~~~l~~~y~~~~~~~----------------------------- 347 (363)
T PRK00555 300 -SAVRA-G-ALGARMTGGGFGGCVIALVPADRAEDVADTVRRAAVTAGYPE----------------------------- 347 (363)
T ss_pred -HHHhc-C-CeEEEECCCCccCeEEEEEchhHHHHHHHHHHHHHHHccCCC-----------------------------
Confidence 33333 6 568899999 5999999998888889999987765432100
Q ss_pred cEEEEccCCCCcEEc
Q psy11141 425 QYLISTKIGSGPKIL 439 (566)
Q Consensus 425 ~~ii~t~vG~Gp~~~ 439 (566)
..++.+++++|++++
T Consensus 348 ~~~~~~~~~~g~~~~ 362 (363)
T PRK00555 348 PAVSRTYAAPGAGEC 362 (363)
T ss_pred CcEEEEecCCCcccC
Confidence 137888999998764
No 41
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]
Probab=99.62 E-value=4.6e-16 Score=161.84 Aligned_cols=97 Identities=38% Similarity=0.607 Sum_probs=83.1
Q ss_pred CcccCCCCCc--------hhhHHHHHHcCCCChHHHHHHHhhccccccccccCCeEEeecCCCCCCCCCCCCccccccCC
Q psy11141 445 NHLLNEAGAP--------KHLMFTLAYALGLNTSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSEGNGDIGRKQFEL 516 (566)
Q Consensus 445 ~~Lld~~Glp--------~ala~~~~~~~~~~~~~~s~~ar~gsgsa~rs~~g~~~~w~~~~~g~~~~~~~~~~~~~~~d 516 (566)
++.+.+.||. .+.+|+.++++++|..++|++||+||||||||+||||+.|.+ |. | +|
T Consensus 97 n~~ptaaGLaSSaag~AAl~~Al~~~~~~~~d~~~lS~~AR~gSGSa~RS~~Gg~~~W~~---~~---g---------~~ 161 (329)
T COG3407 97 NNFPTAAGLASSAAGAAALAAALNRLYDLDLDDEFLSRIARLGSGSASRSIFGGFVLWEK---GE---G---------ED 161 (329)
T ss_pred cCCCccccccccHHHHHHHHHHHHhhhccCCCHHHHHHHHHHhccchhhhhcCCeeEecc---CC---C---------Cc
Confidence 4455555554 455666778999999999999999999999999999999999 43 2 26
Q ss_pred ceeEecCCCCCccceeeEEEEecCCCCccc--------ccchhhHhhc
Q psy11141 517 SNAEQIISESYWGSMRVIILVHLEYVPRVS--------NDTTILFKKL 556 (566)
Q Consensus 517 ~~a~~~~~~~~~~~~~~~i~v~~~~~k~vs--------~~~~~~~~~~ 556 (566)
++++|+.+.+.|+++++++++++..+|+|| +.||++|+.|
T Consensus 162 ~~~~~~~~~~~~~e~~~i~~~~~~~~k~vsS~~gm~~~~~tS~~y~~w 209 (329)
T COG3407 162 SAAEQLFRLDLWKELAMIVLVISPKKKKVSSREGMQLTAETSPFYDAW 209 (329)
T ss_pred cceeeeccccCccccceEEEEEccccCCCCchHHHHHHHHcChHHHHH
Confidence 799999999999999999999999999887 7899999987
No 42
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase
Probab=99.59 E-value=2.3e-15 Score=156.66 Aligned_cols=98 Identities=41% Similarity=0.630 Sum_probs=83.2
Q ss_pred CcccCCCCCch--------hhHHHHHHcCCCChHHHHHHHhhccccccccccCCeEEeecCCCCCCCCCCCCccccccCC
Q psy11141 445 NHLLNEAGAPK--------HLMFTLAYALGLNTSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSEGNGDIGRKQFEL 516 (566)
Q Consensus 445 ~~Lld~~Glp~--------ala~~~~~~~~~~~~~~s~~ar~gsgsa~rs~~g~~~~w~~~~~g~~~~~~~~~~~~~~~d 516 (566)
++++...||-. ..+++.+++++++.++++++||+||||||||+|||||.|.. |. ++ +|
T Consensus 92 n~iP~~aGLgSSAA~~aA~~~Al~~l~~l~l~~~eL~~lA~~gsGsa~~s~~GG~v~~~~---g~--~~---------~~ 157 (305)
T TIGR01240 92 NNFPTAAGLASSASGLAALVSACAKLYQLPLDTSELSRIARKGSGSACRSLFGGYVAWEK---GK--DD---------HS 157 (305)
T ss_pred cCCCCCCccchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCeeeeeecCeEEEEc---CC--CC---------CC
Confidence 45666677663 33455667889999999999999999999999999999999 52 22 37
Q ss_pred ceeEecCCCCCccceeeEEEEecCCCCccc--------ccchhhHhhc
Q psy11141 517 SNAEQIISESYWGSMRVIILVHLEYVPRVS--------NDTTILFKKL 556 (566)
Q Consensus 517 ~~a~~~~~~~~~~~~~~~i~v~~~~~k~vs--------~~~~~~~~~~ 556 (566)
++|+|++++.+|++++++|+++++.+|+|| ++||++|+.|
T Consensus 158 s~a~~i~~~~~~~~~~~~v~vv~~~~k~vsSt~gm~~~~~ts~~~~~~ 205 (305)
T TIGR01240 158 SAAVQVADDSDWPQXAMCVLVVNDIKKDVSSRQGMQLTVATSELFKEW 205 (305)
T ss_pred eeEEECCCccccccceEEEEEcCCCCCCCCCHHHHHHhhhcCccHHHH
Confidence 899999988899999999999999999995 7999999876
No 43
>PRK05905 hypothetical protein; Provisional
Probab=99.58 E-value=2.1e-14 Score=146.13 Aligned_cols=172 Identities=13% Similarity=0.149 Sum_probs=111.2
Q ss_pred ccCCccEEEEEEcCCCCccccccchhhHHHHHHHHHHHhCCCHHHHHHHHHHccCCchhhhcC-CeEEEEeCCCCCCCCC
Q psy11141 149 EMADWKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLNTSEVSHIARQGSGSACRSMFG-GFVRWKTLPEGQQSDG 227 (566)
Q Consensus 149 ~~~~~~v~I~s~nnIP~aaGLGSSAA~aAAla~Aln~L~gL~~eeLs~iAr~GSGSaarSi~G-GfV~w~~~~~G~~~dg 227 (566)
.+...+++|+++|+||+++|||||||.+||++.++|++++++.++|.++|...+.+++++++| |.+ |.+ |. |
T Consensus 81 ~~~~~~~~i~l~K~IP~~aGLGggSSDAAa~L~~Ln~l~~ls~~~L~~ia~~lGADVPFfl~g~~~a-~~~---G~---G 153 (258)
T PRK05905 81 YNIKNHFKIKIKKRIPIGSGLGSGSSNAAVLMKWILEFEGINEINYKDVVNKLGSDIPFFLSGYKTA-YIS---DY---G 153 (258)
T ss_pred hCCCCCeEEEEEeCCCCcCCCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCcceEEeCCccE-EEE---ee---C
Confidence 344568999999999999999999999999999999999988899999998777799999999 886 455 74 5
Q ss_pred CCccccccccceeEEEccCCCCCCceEEEEEEECCCCCCCCChHHHhhhccCCchHHHHHhhhccchHHHHHHHHHcCCH
Q psy11141 228 NGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRTTLTSTLYEHRVNTIVPSRCSGMEEALRARDF 307 (566)
Q Consensus 228 ~~~~~~~~~~~s~a~~I~~~~~wp~L~ivilVv~~~~K~vsST~~mr~~v~ts~~~~~~v~~~~~~~v~~li~AL~~~D~ 307 (566)
+. .++++. .+... ++++.| .-.+||.++++.. +... .. .......++..+.++
T Consensus 154 E~-----------l~pl~~---~~~~~-~vlv~P--~~~vST~~vY~~~-~~~~----~~---~~~~~~~~~~~~~~~-- 206 (258)
T PRK05905 154 SQ-----------VEDLIG---QFKLT-YKVIFM--NVNVSTKKVFEKF-DDNQ----HV---IKNNFKTIIKNLKEN-- 206 (258)
T ss_pred ce-----------eEECCC---CCCce-EEEECC--CCCCCHHHHHHhh-cccc----CC---cccchHHHHHHHHHh--
Confidence 53 566632 12333 333322 3457777888653 1110 00 011111222222221
Q ss_pred HHHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCcceEEee
Q psy11141 308 PRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYV 372 (566)
Q Consensus 308 e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV~~l~ 372 (566)
..+.+ .|.|+++....+|. ..++++ .+.+. | . .+.|||+|||||++-
T Consensus 207 --~~~~~---~NdLe~~a~~~~P~-------i~~~~~---~l~~~-g-~-~a~MSGSGstvF~l~ 253 (258)
T PRK05905 207 --IVVNI---HNDLQEPCFELYPN-------LLYKYN---ELLND-G-F-YTILSGAGSSFIVIK 253 (258)
T ss_pred --hhccc---ccccHHHHHHhChH-------HHHHHH---HHHhC-C-C-CEEEeCcchhheEEe
Confidence 11111 35677777765553 334443 33333 5 3 578999999999984
No 44
>PRK05101 galactokinase; Provisional
Probab=99.55 E-value=9.3e-13 Score=140.99 Aligned_cols=204 Identities=17% Similarity=0.174 Sum_probs=123.7
Q ss_pred ccEEEEEEcCCCCccccccchhhHHHHHHHHHHHhCCC--HHHHHHHHHHc--------cC--CchhhhcCCe--EEEEe
Q psy11141 153 WKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLN--TSEVSHIARQG--------SG--SACRSMFGGF--VRWKT 218 (566)
Q Consensus 153 ~~v~I~s~nnIP~aaGLGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~G--------SG--SaarSi~GGf--V~w~~ 218 (566)
.+++|.+.++||+++|||||||..||++.|++++++++ +++|.++|..+ +| +...|.+||. +++..
T Consensus 111 ~g~~i~i~~~iP~gaGLgSSAA~~va~~~al~~~~~~~l~~~~la~~a~~~E~~~~G~~~G~~Dq~~s~~G~~~~~~~~d 190 (382)
T PRK05101 111 GGADLVISGNVPQGAGLSSSASLEVAVGQTFQQLYHLPLSGAEIALNGQEAENQFVGCNCGIMDQLISALGKKDHALLID 190 (382)
T ss_pred CCeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHcCCCCeEEEEE
Confidence 48999999999999999999999999999999999987 88999999644 23 3455889973 34432
Q ss_pred CCCCCCCCCCCccccccccceeEEEccCCCCCCceEEEEEEECCCCCCC------CChH-----HHhhhccCC-------
Q psy11141 219 LPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKST------SSTD-----GMQRTTLTS------- 280 (566)
Q Consensus 219 ~~~G~~~dg~~~~~~~~~~~s~a~~I~~~~~wp~L~ivilVv~~~~K~v------sST~-----~mr~~v~ts------- 280 (566)
. .+ ....+++.+ +++.++++ +...+.. .++. +.+ .+...
T Consensus 191 ---~---~~-----------~~~~~~~~~---~~~~~vv~--~sg~~~~l~~~~y~~r~~e~~~A~~-~l~~~~l~~~~~ 247 (382)
T PRK05101 191 ---C---RS-----------LETKAVPMP---EGVAVVII--NSNVKRGLVDSEYNTRRQQCETAAR-FFGVKALRDVTL 247 (382)
T ss_pred ---c---CC-----------CceEEeeCC---CCcEEEEE--eCCCCccccccchhHHHHHHHHHHH-HhChHhhhcCCH
Confidence 1 11 112333311 35544433 3322211 1121 011 00000
Q ss_pred -----------chHHHHHhhhc--cchHHHHHHHHHcCCHHHHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHHH
Q psy11141 281 -----------TLYEHRVNTIV--PSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVH 347 (566)
Q Consensus 281 -----------~~~~~~v~~~~--~~~v~~li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~ 347 (566)
+....+...+. ..++...+.||+++|++.||++|...+..|...+. --.|+...+++.++
T Consensus 248 ~~~~~~~~~l~~~~~~r~~h~i~E~~rv~~a~~al~~~d~~~lG~Lm~~sh~~lr~~~~-------vS~~eld~lv~~a~ 320 (382)
T PRK05101 248 EQFNAVAAELDPVVAKRARHVITENARTLEAASALAAGDLKRMGELMAESHASMRDDFE-------ITVPQIDTLVEIVK 320 (382)
T ss_pred HHHHHHHhhCCHHHHHHHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHhHHHHhhcC-------CCCHhHHHHHHHHH
Confidence 00011111111 24788899999999999999998765544432111 11234444444444
Q ss_pred HHHHhhCCceEEEEeCCCc--ceEEeeccCCHHHHHHHHHhhCC
Q psy11141 348 EFNTVVGETKVAYTFDAGP--NACLYVLENTVPLLLSTLVQYFP 389 (566)
Q Consensus 348 ~l~~~~G~~~~a~tsGAGP--nV~~l~~~~~~~~v~~~L~~~f~ 389 (566)
+. .|+..++-++|||- .++++++.+..+++.+.+.+.|.
T Consensus 321 ~~---~Ga~gGakltGaG~GG~~ial~~~~~~~~~~~~~~~~y~ 361 (382)
T PRK05101 321 AV---IGDQGGVRMTGGGFGGCIVALVPEELVEAVRQAVAEQYE 361 (382)
T ss_pred hc---cCCcceEEeccCCCccEEEEEEcHHHHHHHHHHHHHHHH
Confidence 43 25223678988875 66677888778889998887654
No 45
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.54 E-value=9e-14 Score=141.54 Aligned_cols=98 Identities=20% Similarity=0.193 Sum_probs=76.1
Q ss_pred ccEEEEEEcCCCCccccccchhhHHHHHHHHHHHhCCC--HHHHHHHHHHccCCchhhhcC-CeEEEEeCCCCCCCCCCC
Q psy11141 153 WKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLN--TSEVSHIARQGSGSACRSMFG-GFVRWKTLPEGQQSDGNG 229 (566)
Q Consensus 153 ~~v~I~s~nnIP~aaGLGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~GSGSaarSi~G-GfV~w~~~~~G~~~dg~~ 229 (566)
.+++|+++|+||+++|||||||++||++.++|++++++ .+||.++|...+.+++++++| |.+ +.+ |. |+.
T Consensus 85 ~gv~I~i~K~IP~gaGLGggSSdAAA~L~aln~l~~~~ls~~eL~~lA~~lGaDvPffl~~~~~a-~~~---G~---Ge~ 157 (257)
T PRK04181 85 KKKAIEVEKNIPTGAGLGGGSSDAATFLLMLNEILNLKLSLEELAEIGSKVGADVAFFISGYKSA-NVS---GI---GEI 157 (257)
T ss_pred CceEEEEEeCCCCcCcccccHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCccEEecCCceE-EEE---ee---CCe
Confidence 37999999999999999999999999999999999987 899999998877799999999 765 455 64 542
Q ss_pred ccccccccceeEEEccCCCCCCceEEEEEEECCCCCCCCChHHHhh
Q psy11141 230 DIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTDGMQR 275 (566)
Q Consensus 230 ~~~~~~~~~s~a~~I~~~~~wp~L~ivilVv~~~~K~vsST~~mr~ 275 (566)
.++++.. +. . ++++.| ...+||.+++++
T Consensus 158 -----------l~~l~~~---~~-~-~~lv~P--~~~vsT~~vy~~ 185 (257)
T PRK04181 158 -----------VEEFEEE---IL-N-LEIFTP--NIFCSTKAVYKA 185 (257)
T ss_pred -----------eEECCCC---CC-e-EEEECC--CCCcCHHHHHHH
Confidence 5676421 12 2 333332 345777777764
No 46
>PLN02677 mevalonate kinase
Probab=99.49 E-value=1.4e-12 Score=139.88 Aligned_cols=193 Identities=19% Similarity=0.266 Sum_probs=128.0
Q ss_pred ccEEEEEEcCCCCccccccchhhHHHHHHHHHHHhCC-------------C---HHHHHHHHHHc--------cC-Cchh
Q psy11141 153 WKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGL-------------N---TSEVSHIARQG--------SG-SACR 207 (566)
Q Consensus 153 ~~v~I~s~nnIP~aaGLGSSAA~aAAla~Aln~L~gL-------------~---~eeLs~iAr~G--------SG-Saar 207 (566)
.+++|++++++|+++|||||||..+|++.|++.+++. + .+++.++|..+ || +.+.
T Consensus 128 ~~~~i~I~S~lP~GaGLGSSAAv~Va~~~AL~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~A~~~E~~~hG~pSGiD~a~ 207 (387)
T PLN02677 128 NPATVVVTSELPLGSGLGSSAAFCVALSAALLAASDSISVSTGGNGWSSLDETDLELVNKWAFEGEKIIHGKPSGIDNTV 207 (387)
T ss_pred CCeEEEEEccCCCCCCccHHHHHHHHHHHHHHHHhCCcccccccccccccChhHHHHHHHHHHHHHHHHhCCCCchhHHH
Confidence 3689999999999999999999999999999999982 1 34666777433 44 6789
Q ss_pred hhcCCeEEEEeCCCCCCCCCCCccccccccceeEEEccCCCCCCceEEEEEEECCCCCCCCChHHHhhhc----cC-Cch
Q psy11141 208 SMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRTT----LT-STL 282 (566)
Q Consensus 208 Si~GGfV~w~~~~~G~~~dg~~~~~~~~~~~s~a~~I~~~~~wp~L~ivilVv~~~~K~vsST~~mr~~v----~t-s~~ 282 (566)
|.|||++.+.+ + + .++++.+ ++++ ++|.+... ..+|..|..-+ .. ...
T Consensus 208 s~~Gg~I~f~~---~------~-----------~~~l~~~---~~l~--llv~dTgv--~~sT~~lV~~V~~~~~~~p~~ 260 (387)
T PLN02677 208 STYGNMIKFKS---G------E-----------LTRLQSN---MPLK--MLITNTRV--GRNTKALVAGVSERALRHPDA 260 (387)
T ss_pred HhcCCeEEEcC---C------C-----------ceecCCC---CCce--EEEEECCC--CCcHHHHHHHHHHHHHhCHHH
Confidence 99999987655 3 1 2344321 3444 34444433 34677776544 11 224
Q ss_pred HHHHHhhhccchHHHHHHHHHc---------CCHHHHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhh
Q psy11141 283 YEHRVNTIVPSRCSGMEEALRA---------RDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVV 353 (566)
Q Consensus 283 ~~~~v~~~~~~~v~~li~AL~~---------~D~e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~ 353 (566)
++..++. ....+.+++++|++ +|++.++++|..|+..|.++-.+ .+...++++.+++ .
T Consensus 261 ~~~il~~-~~~i~~~a~~al~~~~~~~~~~~~~~~~Lg~lm~~N~~LL~~LGVS--------~~~le~iv~~a~~---~- 327 (387)
T PLN02677 261 MKSVFNA-VDSISEELATIIQSPAEDELSITEKEEKLKELMEMNQGLLQCMGVS--------HSSIETVLRTTLK---Y- 327 (387)
T ss_pred HHHHHHH-HHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHcCCC--------cHHHHHHHHHHHH---c-
Confidence 5555565 67788999999998 57999999999888888766542 2334444444433 2
Q ss_pred CCceEEEEeCCCcceEEee--cc----CCHHHHHHHHHhh
Q psy11141 354 GETKVAYTFDAGPNACLYV--LE----NTVPLLLSTLVQY 387 (566)
Q Consensus 354 G~~~~a~tsGAGPnV~~l~--~~----~~~~~v~~~L~~~ 387 (566)
| .++.++|||-.-++|+ ++ ++.+++.+++++.
T Consensus 328 ~--~~AKlTGAGgGGC~IaL~~~~~~~~~~~~l~~~l~~~ 365 (387)
T PLN02677 328 K--LVSKLTGAGGGGCVLTLLPTLLSGTVVDKVIAELESS 365 (387)
T ss_pred C--CccccccCCCCCEEEEEcccccchhHHHHHHHHHHHC
Confidence 3 3689999987665554 32 1244555555543
No 47
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=99.38 E-value=3.9e-11 Score=122.51 Aligned_cols=246 Identities=14% Similarity=0.122 Sum_probs=155.1
Q ss_pred ccceeecCCCceeEEEEEecCCCCccEEEEcCcc------------chhhhh-----hhhccCCccEEEEEEcCCCCccc
Q psy11141 106 IEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKK------------LAEQEK-----SSREMADWKMHICSENNFPTAAG 168 (566)
Q Consensus 106 SLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~~------------~~~~~~-----~l~~~~~~~v~I~s~nnIP~aaG 168 (566)
.++.|+| .|+.++++ +. .+++|.++=.. -+..+. .+.+.....++|.+..++|.+.|
T Consensus 30 VlnatId---ky~y~~i~--~~-~d~~I~~~~~~~~~v~~~~~~~h~~~~~~~l~r~~l~~~g~~~~el~~~~D~P~GSG 103 (333)
T COG2605 30 VLNATID---KYIYVTIE--KG-FDDEIRVRYDRTEFVKSYLENEHKPLVVESLKRDFLEFNGGTPIELHTQSDAPPGSG 103 (333)
T ss_pred EEEeeee---eEEEEEEc--cC-CCceEEEecchHHhhhhhHhhcCchHHHHHHHHHHHhhcCCCceEEEEecCCCCCCC
Confidence 6788888 47777765 22 24566666111 011111 12222233499999999999999
Q ss_pred cccchhhHHHHHHHHHHHhCCC--HHHHHHHHHHc--------cC--CchhhhcCCeEEEEeCCCCCCCCCCCccccccc
Q psy11141 169 LASSAAGYSCLVFTLAYALGLN--TSEVSHIARQG--------SG--SACRSMFGGFVRWKTLPEGQQSDGNGDIGRKQC 236 (566)
Q Consensus 169 LGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~G--------SG--SaarSi~GGfV~w~~~~~G~~~dg~~~~~~~~~ 236 (566)
||||||..+|++-|++.+-|.. .++|.+.|-.. .| +.-.+.||||-...- . .+++
T Consensus 104 LGSSSa~vvaLl~a~~~~kg~~~~~~~LA~eAy~IER~~l~~~gG~QDqYaaA~GGFnfMEf---~--~~~~-------- 170 (333)
T COG2605 104 LGSSSAFVVALLNALHAWKGESLGPYELAREAYEIEREDLKIVGGKQDQYAAAFGGFNFMEF---R--GNGE-------- 170 (333)
T ss_pred CCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccHHHHHhCCceEEEE---c--CCCc--------
Confidence 9999999999999999999977 89999999322 44 678899999976553 2 1343
Q ss_pred cceeEEEccCCCCC--Cce--EEEEEEECCCCCCCCChHHHhhhc----cCCchHHHHHhhhccchHHHHHHHHHcCCHH
Q psy11141 237 ELSNAEQIISESYW--GSM--RVIILVVNDQAKSTSSTDGMQRTT----LTSTLYEHRVNTIVPSRCSGMEEALRARDFP 308 (566)
Q Consensus 237 ~~s~a~~I~~~~~w--p~L--~ivilVv~~~~K~vsST~~mr~~v----~ts~~~~~~v~~~~~~~v~~li~AL~~~D~e 308 (566)
+.+.++... .| .+| +++++.... +-.|++....-+ +....-.....+ ..+.+.+|..++..+|+.
T Consensus 171 --V~v~pL~i~-~e~~~Ele~~~lL~yTGi---~R~Ss~V~~dQ~~~~~~~~~~~~e~~~~-mk~~A~~~~~al~~nd~~ 243 (333)
T COG2605 171 --VVVNPLRIN-RERTAELEARLLLYYTGI---TRQSSEVIEDQVRNVVDGDEETLEALHE-MKALAYEMKDALVRNDIP 243 (333)
T ss_pred --EEEeecccc-hhHHHHHHhceEEEEecc---ccchhHHHHHHHHHhhcccHHHHHHHHH-HHHHHHHHHHHHHhcchH
Confidence 566777542 22 233 334343322 223555543322 211111111222 456788999999999999
Q ss_pred HHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCcceE--EeeccCCHHHHHHHHHh
Q psy11141 309 RFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNAC--LYVLENTVPLLLSTLVQ 386 (566)
Q Consensus 309 ~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV~--~l~~~~~~~~v~~~L~~ 386 (566)
.|++++.+.+ ++....-+ ..+...|+.+.++....| +.++.++|||..-| ++|++.....+.++|..
T Consensus 244 ~f~~~l~~gW-~~KK~ls~---------~ISN~~IDriy~~A~~~G-A~~gKl~GaG~gGFllf~~~p~k~~~l~r~l~~ 312 (333)
T COG2605 244 EFGQILDRGW-EAKKKLSS---------RISNDAIDRIYELALKNG-AYGGKLSGAGGGGFLLFFCDPSKRNELARALEK 312 (333)
T ss_pred HHHHHHHhHH-Hhhhhhcc---------CcCcHHHHHHHHHHHhcC-chhceeeccCCccEEEEEeCccchHHHHHHHHH
Confidence 9999987654 44332221 234445555555555557 56789998887555 45788888889999887
Q ss_pred hC
Q psy11141 387 YF 388 (566)
Q Consensus 387 ~f 388 (566)
..
T Consensus 313 ~~ 314 (333)
T COG2605 313 EQ 314 (333)
T ss_pred hc
Confidence 53
No 48
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=99.37 E-value=1.4e-11 Score=143.72 Aligned_cols=208 Identities=15% Similarity=0.101 Sum_probs=132.5
Q ss_pred ccEEEEEEcCCCCccccccchhhHHHHHHHHHHHhCCC--HHHHHHHHHHc----cC-----CchhhhcCCeEEEEeCCC
Q psy11141 153 WKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLN--TSEVSHIARQG----SG-----SACRSMFGGFVRWKTLPE 221 (566)
Q Consensus 153 ~~v~I~s~nnIP~aaGLGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~G----SG-----SaarSi~GGfV~w~~~~~ 221 (566)
.+++|.+..+||.++|||||||..+|++.|++++++.+ ++++.++|..+ .| +...++|||+.....
T Consensus 725 ~G~~I~i~s~IP~GsGLGSSAAlavA~l~AL~~~~g~~ls~~ela~~A~~~E~~lhg~~g~qDq~~a~~GG~~~i~~--- 801 (974)
T PRK13412 725 SGIEITLLAAIPAGSGLGTSSILAATVLGAISDFCGLAWDKNEICNRTLVLEQLLTTGGGWQDQYGGVLPGVKLLQT--- 801 (974)
T ss_pred CCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHCCCCchhhhhhHhcCCeEEEEe---
Confidence 47999999999999999999999999999999999987 88898888522 22 568899999987655
Q ss_pred CCCCCCCCccccccccceeEEEccCCCCC-CceEEEEEEECCCCCCCCChHHHhh----hccCCchHHHHHhhhccchHH
Q psy11141 222 GQQSDGNGDIGRKQCELSNAEQIISESYW-GSMRVIILVVNDQAKSTSSTDGMQR----TTLTSTLYEHRVNTIVPSRCS 296 (566)
Q Consensus 222 G~~~dg~~~~~~~~~~~s~a~~I~~~~~w-p~L~ivilVv~~~~K~vsST~~mr~----~v~ts~~~~~~v~~~~~~~v~ 296 (566)
+...+.. ..+.+++.+... +++...++++....+ -.+.+...+ .......+...++. ..+.+.
T Consensus 802 ~~~~~~~----------~~v~~L~~~~~~~~eLe~~LlL~yTGit-R~T~~iV~~Vv~~~~~~~~~~~~~l~~-ig~La~ 869 (974)
T PRK13412 802 GAGFAQS----------PLVRWLPDSLFTQPEYRDCHLLYYTGIT-RTAKGILAEIVRSMFLNSTAHLQLLHE-MKAHAL 869 (974)
T ss_pred cCCcccC----------cceeecCcchhhhhhccCcEEEEECCCe-eeHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHH
Confidence 3100111 234455421100 233322344434332 223332322 21222333344554 456788
Q ss_pred HHHHHHHcCCHHHHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCcceEE--eec-
Q psy11141 297 GMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACL--YVL- 373 (566)
Q Consensus 297 ~li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV~~--l~~- 373 (566)
++..||+++|++.||++|..+...++++.. .+ =+|...++++.+++ | +.++.++|||-.-|+ ++.
T Consensus 870 ea~~ALe~gD~~~LG~LMn~~w~ll~~L~~----GV--Snp~LD~Li~~A~~-----g-AlGaKLTGAGGGGcvI~Lak~ 937 (974)
T PRK13412 870 DMYEAIQRGEFEEFGRLVGKTWEQNKALDS----GT--NPAAVEAIIELIKD-----Y-TLGYKLPGAGGGGYLYMVAKD 937 (974)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhccC----CC--CCHHHHHHHHHHHc-----C-CcEEEecccCcccEEEEEECC
Confidence 999999999999999999877667766521 11 13444455544422 4 467899999876665 453
Q ss_pred cCCHHHHHHHHHhh
Q psy11141 374 ENTVPLLLSTLVQY 387 (566)
Q Consensus 374 ~~~~~~v~~~L~~~ 387 (566)
+++.+++.++|++.
T Consensus 938 ~~~a~~I~~~L~~~ 951 (974)
T PRK13412 938 PGAAERIRKILTEN 951 (974)
T ss_pred hhhHHHHHHHHHhc
Confidence 44467788888764
No 49
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.27 E-value=4.6e-10 Score=113.62 Aligned_cols=214 Identities=17% Similarity=0.207 Sum_probs=128.1
Q ss_pred eeecCCCceeEEEEEecCCCCccEEEEcCcc-chh--hh----hhh-hccCCccEEEEEEcCCCCccccccchhhHHHHH
Q psy11141 109 IEITFQRMHAKTSVALSPDFTEDKLWLNGKK-LAE--QE----KSS-REMADWKMHICSENNFPTAAGLASSAAGYSCLV 180 (566)
Q Consensus 109 ltLd~~~lyt~TtV~~s~~~~~d~i~lnG~~-~~~--~~----~~l-~~~~~~~v~I~s~nnIP~aaGLGSSAA~aAAla 180 (566)
+.+| |.++.+|+++++ ..+-|++ .+. .+ ..+ .+++..+++++++++||.+.||.||||...|++
T Consensus 25 fgid---L~v~a~v~~~~~-----~~~~~~~~~d~~li~~~~~~v~e~~g~~~~~~v~v~SeiP~~~GLkSSSA~~nAlv 96 (278)
T COG1685 25 FGID---LKVEAEVRLSDE-----GKVRGEPEGDTRLIERCVERVREKYGIPLGVEVEVESEIPVGSGLKSSSAASNALV 96 (278)
T ss_pred eeec---ceEEEEEEEcCc-----cccccCCCCChHHHHHHHHHHHHHcCCCcceEEEEecCCCcccCcchhHHHHHHHH
Confidence 5666 788888887652 3343432 111 11 111 367788899999999999999999999999999
Q ss_pred HHHHHHhCCC--HHHHHHHHHH---ccC--------CchhhhcCCeEEEEeCCCCCCCCCCCccccccccceeEEEccCC
Q psy11141 181 FTLAYALGLN--TSEVSHIARQ---GSG--------SACRSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISE 247 (566)
Q Consensus 181 ~Aln~L~gL~--~eeLs~iAr~---GSG--------SaarSi~GGfV~w~~~~~G~~~dg~~~~~~~~~~~s~a~~I~~~ 247 (566)
.|..+++|.+ +.++.+++.+ ..| ++|+|+|||+++-. +. +. ...+...
T Consensus 97 ~A~~~~~g~~~~~~~i~~l~a~~S~~aGvSvTGA~DDa~AS~~GG~~iTD----N~----~m----------~Ilrr~~- 157 (278)
T COG1685 97 KAVLKALGEEIDDFEILRLGARASKEAGVSVTGAFDDACASYLGGIVITD----NR----KM----------RILRRLD- 157 (278)
T ss_pred HHHHHHcCCCCChhHHHHHHHHHHHhcCceEeccchHHHHHHhCCeEEec----ch----hh----------eehhccc-
Confidence 9999999966 6777777643 344 67999999998643 21 11 1222211
Q ss_pred CCCCceEEEEEEECCCCCC-CCChHHHhhhccCCchHHHHHhhhccchHHHHHHHHHcCCHHHHHHHHHhchhhhhhccc
Q psy11141 248 SYWGSMRVIILVVNDQAKS-TSSTDGMQRTTLTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCL 326 (566)
Q Consensus 248 ~~wp~L~ivilVv~~~~K~-vsST~~mr~~v~ts~~~~~~v~~~~~~~v~~li~AL~~~D~e~lgel~~~Dsn~LHa~~~ 326 (566)
-+++.++++++...... ...-..||.. ..-+......-.+|+|.....+ |. .+-...+
T Consensus 158 --~~~~~vlI~~p~~k~~~~~vdv~~~r~~---------------a~~~e~A~~lA~~G~~~~Am~l---NG-~~y~~aL 216 (278)
T COG1685 158 --LPELTVLILAPGEKRLSANVDVNRLRLI---------------APVVEEAFRLALKGEYFKAMVL---NG-ILYCSAL 216 (278)
T ss_pred --cCCceEEEEecCCccccccCCHHHHHHh---------------hHHHHHHHHHHhcccHHHHHHH---hH-HHHHHHh
Confidence 26777788876543110 0112233221 1223334444456777665433 22 2222222
Q ss_pred ccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCcceEEeeccCCHHHHHHHHHhh
Q psy11141 327 DTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLENTVPLLLSTLVQY 387 (566)
Q Consensus 327 ~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV~~l~~~~~~~~v~~~L~~~ 387 (566)
- +| ... +.+.-+. | ..++-.||-||..|++++++ +.+.+++.+.
T Consensus 217 G-~~--------~e~----~~~ale~-G-A~~aglSGtGPa~~Al~~~~--~~v~ea~~~~ 260 (278)
T COG1685 217 G-YD--------LEP----ALKALEA-G-AAAAGLSGTGPAYFALTEDP--EEVAEAWSKI 260 (278)
T ss_pred C-CC--------hHH----HHHHHhc-c-cceeccCCCCCceEEEecCc--HHHHHHHHhC
Confidence 1 11 222 2233223 6 34556799999999999766 6677777664
No 50
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=99.27 E-value=3.7e-10 Score=119.81 Aligned_cols=224 Identities=22% Similarity=0.242 Sum_probs=146.0
Q ss_pred ccEEEEEEcCCCCccccccchhhHHHHHHHHHHHhCCC--HHHHHHHHHHcc----C------CchhhhcC--CeEEEEe
Q psy11141 153 WKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLN--TSEVSHIARQGS----G------SACRSMFG--GFVRWKT 218 (566)
Q Consensus 153 ~~v~I~s~nnIP~aaGLGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~GS----G------SaarSi~G--GfV~w~~ 218 (566)
.++.|.+..|||+++||+||||--+|++.++.++++++ +.+|.+|+...+ | +-..+.|| +-++...
T Consensus 114 ~G~~i~i~gnIP~GaGLSSSAAleva~~~al~~l~~~~~~k~~la~i~q~AEn~fvGvn~G~mDQ~~s~~G~~~~al~ld 193 (390)
T COG0153 114 TGLDIVISGNIPIGAGLSSSAALEVAVALALQRLFNLPLDKAELAKIAQVAENQFVGVNCGIMDQLASAFGKKDHALLLD 193 (390)
T ss_pred CCeeEEEecCCCCCCCcCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccCCcCchHHHHHHHhCCCCcEEEEE
Confidence 38999999999999999999999999999999999988 889999996442 3 45789999 2333332
Q ss_pred CCCCCCCCCCCccccccccceeEEEccCCCCCCceEEEEEEECCCCCCCCChH---------------------HHhhhc
Q psy11141 219 LPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTD---------------------GMQRTT 277 (566)
Q Consensus 219 ~~~G~~~dg~~~~~~~~~~~s~a~~I~~~~~wp~L~ivilVv~~~~K~vsST~---------------------~mr~~v 277 (566)
-. + ..+++++. |...+.++|++...|...... .++...
T Consensus 194 ---~~-----~---------l~~~~~~~----p~~~~~ivI~ns~vkr~la~seYn~Rr~ece~A~~~l~~~~~~L~d~~ 252 (390)
T COG0153 194 ---CR-----T---------LEYEPVPF----PVGGVSIVIVNSNVKRELADSEYNERRAECEEAAEFLGVSIKSLRDVT 252 (390)
T ss_pred ---cc-----c---------CceEEecc----CccceEEEEecCCCccccchhHHHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence 11 1 22455542 344466677776543332221 111100
Q ss_pred --------c--C-Cc----hHHHHHhhhccchHHHHHHHHHcCCHHHHHHHHHhchhhhhhcccccCCCceeccccHHHH
Q psy11141 278 --------L--T-ST----LYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSI 342 (566)
Q Consensus 278 --------~--t-s~----~~~~~v~~~~~~~v~~li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~I 342 (566)
. + .+ ...+++. -.+|+.+..+||+++|+..||++|+. =|+-+++.|- .-.|+...+
T Consensus 253 ~~~~~~~~~~i~~~~~~~rRa~hvv~--En~Rvl~a~~Al~~~dl~~fG~Lm~~----SH~slrddye---vt~pElD~l 323 (390)
T COG0153 253 DEEFAALQAEIEVDPKIARRARHVVT--ENQRVLEAAKALRSGDLTEFGELMNE----SHESLRDDYE---VTCPELDTL 323 (390)
T ss_pred HHHHHhhhhhcccchHHHHHHHHHHh--HHHHHHHHHHHHHcCCHHHHHHHHHH----HHHHHHhccc---ccchhHHHH
Confidence 0 0 01 1122333 25788999999999999999999864 4555555321 113455555
Q ss_pred HHHHHHHHHhhCCceEEEEeCCCc--ceEEeeccCCHHHHHHHHHhhCCCCCCCCCccccCcccccCCCCCCCCCCCCCC
Q psy11141 343 VRFVHEFNTVVGETKVAYTFDAGP--NACLYVLENTVPLLLSTLVQYFPPSSGISAPYIRGLEYLNILPPVQLPSFTPQP 420 (566)
Q Consensus 343 i~~v~~l~~~~G~~~~a~tsGAGP--nV~~l~~~~~~~~v~~~L~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (566)
.+.+... .| ..++=|+|||= -+++|++.++.+++.+.+.+.+.... |++
T Consensus 324 ve~a~~~---~G-~~GaRmTGaGfGGc~IaLv~~~~v~~~~e~v~~~y~~~~--------g~k----------------- 374 (390)
T COG0153 324 VEIALAA---GG-AYGARMTGAGFGGCVIALVPNDDVEAVAEAVAEEYEKVT--------GLK----------------- 374 (390)
T ss_pred HHHHHHc---CC-cccceecCCCCCceEEEEechhhHHHHHHHHHHhHHhhc--------Ccc-----------------
Confidence 5544433 24 46788888885 56666788889999999987665433 122
Q ss_pred CCCccEEEEccCCCCcEEc
Q psy11141 421 AGLLQYLISTKIGSGPKIL 439 (566)
Q Consensus 421 ~~~~~~ii~t~vG~Gp~~~ 439 (566)
..+++++++.|.+++
T Consensus 375 ----~~~yv~~~~~G~~~~ 389 (390)
T COG0153 375 ----AAFYVVEASQGAGVC 389 (390)
T ss_pred ----ccEEEEeccCCcccc
Confidence 137889999998865
No 51
>PLN02521 galactokinase
Probab=99.25 E-value=4.9e-10 Score=123.92 Aligned_cols=66 Identities=26% Similarity=0.372 Sum_probs=57.4
Q ss_pred ccEEEEEEcCCCCccccccchhhHHHHHHHHHHHhCCC--HHHHHHHHHHccC---------CchhhhcC--CeEEEEe
Q psy11141 153 WKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLN--TSEVSHIARQGSG---------SACRSMFG--GFVRWKT 218 (566)
Q Consensus 153 ~~v~I~s~nnIP~aaGLGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~GSG---------SaarSi~G--GfV~w~~ 218 (566)
.+++|.++++||.++|||||||..+|++.|++++++++ ++++.++|..++. +.+.|++| |.++...
T Consensus 148 ~g~~i~i~s~IP~gsGLgSSAA~~vA~~~al~~~~~~~l~~~~la~la~~~E~~~g~~~g~mDq~as~~g~~g~al~~d 226 (497)
T PLN02521 148 VGLDVVVDGTVPTGSGLSSSAALVCSAAIAIMAALGLNFTKKEVAQFTCKCERHIGTQSGGMDQAISIMAQQGVAKLID 226 (497)
T ss_pred CCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCccCCCCChHHHHHHHhcCCCcEEEEe
Confidence 48999999999999999999999999999999999987 8999999975532 55889999 8876543
No 52
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=99.25 E-value=6.6e-10 Score=113.60 Aligned_cols=256 Identities=15% Similarity=0.149 Sum_probs=156.7
Q ss_pred CCCccceeecCCCceeEEEEEecCCCCccEEEEcCccch-hhhh--hhhccCCccEEEEEEcCCCCccccccchhhHHHH
Q psy11141 103 LNGIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKKLA-EQEK--SSREMADWKMHICSENNFPTAAGLASSAAGYSCL 179 (566)
Q Consensus 103 ~ndSLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~~~~-~~~~--~l~~~~~~~v~I~s~nnIP~aaGLGSSAA~aAAl 179 (566)
.+.++|+||+ ..+.+++++.+ |.+.++|+... +-.+ .+......+++|++...||---||||.-..+.|+
T Consensus 24 v~GgvG~aLe--~P~l~i~~~~s-----~~~~~~ge~~~~~~~~~a~~~le~~~gv~I~I~~~~P~HvGLGS~TQlaLa~ 96 (312)
T COG1907 24 VDGGVGLALE--EPRLEIEAKPS-----DDIEVDGEDRRERVEKAARLVLEVGEGVKIEIRSDIPAHVGLGSTTQLALAV 96 (312)
T ss_pred eecceeEEee--CCceEEEEecc-----ccccccchhhHHHHHHHHHHhhcccCceEEEEEecCchhcCCChHHHHHHHH
Confidence 3578889999 57777777644 45777776532 1111 1112223679999999999999999999999999
Q ss_pred HHHHHHHhCCC--HHHHHHHHHHc--cC-CchhhhcCCeEEEEeCCCCCCCCCCCccccccccce-eEEEccCCCCCC-c
Q psy11141 180 VFTLAYALGLN--TSEVSHIARQG--SG-SACRSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELS-NAEQIISESYWG-S 252 (566)
Q Consensus 180 a~Aln~L~gL~--~eeLs~iAr~G--SG-SaarSi~GGfV~w~~~~~G~~~dg~~~~~~~~~~~s-~a~~I~~~~~wp-~ 252 (566)
+.|+++++|++ .+||....++| || .+...-+|||++ .. |.. .+ .+ |+-.+ ..-+.+ +| +
T Consensus 97 a~ai~~i~gl~~~~~elA~~vgRG~tSgiGv~afe~GGFIV-DG---Gh~-~~--f~---ps~~sP~I~R~d----fPed 162 (312)
T COG1907 97 ASAILEIYGLELSIRELAFAVGRGGTSGIGVYAFEYGGFIV-DG---GHS-FG--FL---PSSASPLIFRLD----FPED 162 (312)
T ss_pred HHHHHHHhcCCCCHHHHHHHHccCCccceeEEEEEECCEEE-EC---Ccc-cC--cc---cCCCCceeeeec----CCCc
Confidence 99999999998 78888887776 44 347788999974 33 321 11 00 00001 122222 34 6
Q ss_pred eEEEEEEECCCCCCCCChHHHhhhccCCchHH-HHHhhhccchHHHHHHHHHcCCHHHHHHHHHhchhhhhhcc---ccc
Q psy11141 253 MRVIILVVNDQAKSTSSTDGMQRTTLTSTLYE-HRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACC---LDT 328 (566)
Q Consensus 253 L~ivilVv~~~~K~vsST~~mr~~v~ts~~~~-~~v~~~~~~~v~~li~AL~~~D~e~lgel~~~Dsn~LHa~~---~~~ 328 (566)
.++++.||.-+ +...-.+. ..+..+..... ..+..+.+-.+=.|.-|+.++|++.|++.+. +++... .+.
T Consensus 163 W~~VlaIP~~~-rg~~~~~E-~~if~~~~p~p~~~~~~ls~~vLm~mmPavvE~Die~fg~~l~----~iQ~l~g~~f~~ 236 (312)
T COG1907 163 WRFVLAIPEVE-RGVSGRRE-VDIFKKYCPVPLEEVGELSHRVLMKMMPAVVERDIESFGEALN----EIQELGGKWFKK 236 (312)
T ss_pred eEEEEEecCCC-ccccchHH-HHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHhhCHHHHHHHHH----HHHHHHhhhhhh
Confidence 67777775433 23322221 11222222111 1222234566778899999999999999974 344433 222
Q ss_pred CCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCcceEEeeccCCHHHHHHHHHhhCCCCC
Q psy11141 329 YPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLENTVPLLLSTLVQYFPPSS 392 (566)
Q Consensus 329 ~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV~~l~~~~~~~~v~~~L~~~f~~~~ 392 (566)
-.-.+..+.-. +.++.+.+. ..++-.|-=||||..|++++....+.+.+.+.|.+.+
T Consensus 237 -~e~~~~~~~V~---~iv~~m~~~---a~~agqSSwGPtvY~i~d~~~~~~~~~~~~~~~~~~g 293 (312)
T COG1907 237 -VEGGLQREDVK---EIVDEMVEA---AYGAGQSSWGPTVYGIVDSREAGSVVRKLIDILLEEG 293 (312)
T ss_pred -hhceeccHHHH---HHHHHHHHh---cccccccccCCEEEEeccccccchHHHHHHHHHHhcC
Confidence 12234444444 444455433 2345556699999999998877666666666655444
No 53
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only]
Probab=99.22 E-value=6.5e-10 Score=112.96 Aligned_cols=217 Identities=21% Similarity=0.253 Sum_probs=145.8
Q ss_pred CCCccc--eeecCCCceeEEEEEecCCCCccEEEEcCccchh--hhhhhhccCCccEEEEEEcCCCCccccccchhhHHH
Q psy11141 103 LNGIEP--IEITFQRMHAKTSVALSPDFTEDKLWLNGKKLAE--QEKSSREMADWKMHICSENNFPTAAGLASSAAGYSC 178 (566)
Q Consensus 103 ~ndSLS--ltLd~~~lyt~TtV~~s~~~~~d~i~lnG~~~~~--~~~~l~~~~~~~v~I~s~nnIP~aaGLGSSAA~aAA 178 (566)
...|+| ++|+ -+++++|.+.+. ..+++||++.+. -++..+.....++.|+++..+|+++|+|-|||++.+
T Consensus 25 ~SGSiGaGv~l~---~gv~v~v~~~~~---~~v~~Ng~~~d~~~~~~v~e~L~~~~~~v~~~~~~P~G~G~G~Sga~AL~ 98 (283)
T COG1829 25 KSGSIGAGVALE---RGVTVEVRFGEG---TGVRLNGKKIDLPITRKVIEKLGPDGVGVRIESPVPLGCGYGVSGAGALG 98 (283)
T ss_pred cCCCcceeEEec---CceeEEEEecCC---ceEEECCeeccchhHHHHHHHhCccCcceEEEecCCCCcccchhHHHHHH
Confidence 456776 6777 688888888774 679999965322 222222223344678888899999999999999999
Q ss_pred HHHHHHHHhCCCHHHHHHHHH-------HccCCchhhhcCCeEEEEeCCCCCCCCCCCccccccccceeEEEccCCCCCC
Q psy11141 179 LVFTLAYALGLNTSEVSHIAR-------QGSGSACRSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWG 251 (566)
Q Consensus 179 la~Aln~L~gL~~eeLs~iAr-------~GSGSaarSi~GGfV~w~~~~~G~~~dg~~~~~~~~~~~s~a~~I~~~~~wp 251 (566)
.+.|+|..++++.++..++|. .|-||+..-.+||+|+..+ ||.++. -.+++|+ |+
T Consensus 99 ~Ala~a~~~~~~~~~a~~~AH~aEV~~gtGLGDVvAq~~GGlViR~~--pG~Pg~------------~~vd~Ip----~~ 160 (283)
T COG1829 99 TALALAEELGLGEESAARIAHVAEVENGTGLGDVVAQYTGGLVIRVK--PGGPGE------------GEVDRIP----VP 160 (283)
T ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCCCchHHHHHhcCcEEEEec--CCCCCe------------EEEEEee----cC
Confidence 999999999998667777773 4567999999999988765 353222 2466775 35
Q ss_pred ceEEEEEEECCCCCCCCChHHHhhhccCCchHHHHHhhhccchHHHHHHHHHcCCHHHHHHHHHhchhhhhhcccccCCC
Q psy11141 252 SMRVIILVVNDQAKSTSSTDGMQRTTLTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPP 331 (566)
Q Consensus 252 ~L~ivilVv~~~~K~vsST~~mr~~v~ts~~~~~~v~~~~~~~v~~li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P~ 331 (566)
+++++...+.. . ||+.+- ++. .++.++..-...|.+.+++-+++.|.+...+ |-...
T Consensus 161 ~~~V~~~~~g~----l-~T~~vi----~~~----~~~~i~~~g~~~l~ellk~Ptle~f~~~a~~----FA~~~------ 217 (283)
T COG1829 161 GLRVITISLGE----L-STKSVI----TDE----VVRKINEAGKRALAELLKNPTLENFMEEARE----FARRT------ 217 (283)
T ss_pred CceEEEEEccc----c-cHHHhh----hhH----HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH----HHHHh------
Confidence 57777666532 2 444432 111 1233345667788888999999999888653 32211
Q ss_pred ceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCcceEEee
Q psy11141 332 IVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYV 372 (566)
Q Consensus 332 i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV~~l~ 372 (566)
.=.+..+.+.++++... | ...+++.--|=+||++.
T Consensus 218 ----Gl~~~~v~~~~~~~~~~-g-~l~as~~mlg~tVFa~~ 252 (283)
T COG1829 218 ----GLMSEEVKEAAEALHSV-G-GLGASMAMLGVTVFALS 252 (283)
T ss_pred ----CcCHHHHHHHHHHhhhc-C-chhHhHHhhCcEEEEec
Confidence 11235666666666543 4 33356656899999998
No 54
>PLN02865 galactokinase
Probab=99.11 E-value=7.4e-09 Score=112.52 Aligned_cols=210 Identities=14% Similarity=0.069 Sum_probs=127.4
Q ss_pred ccEEEEEEcCC-CCccccccchhhHHHHHHHHHHHhCCC--HHHHHHHHHHc--------cC--Cchh---hhcCCeEEE
Q psy11141 153 WKMHICSENNF-PTAAGLASSAAGYSCLVFTLAYALGLN--TSEVSHIARQG--------SG--SACR---SMFGGFVRW 216 (566)
Q Consensus 153 ~~v~I~s~nnI-P~aaGLGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~G--------SG--Saar---Si~GGfV~w 216 (566)
.++.+.+..++ |.++||+||||..+|++.|++++++++ .+++.++|... +| +-.. +-.|++...
T Consensus 129 ~G~~~~v~g~vpP~gsGLsSSAAl~va~~~al~~~~~~~~~~~~la~~a~~~E~~~~G~~~G~mDQ~as~~~~~g~~~~i 208 (423)
T PLN02865 129 QGITGYISGSEGLDSSGLSSSAAVGVAYLLALENANNLTVSPEDNIELDRLIENEYLGLRNGILDQSAILLSRYGCLTFM 208 (423)
T ss_pred CceEEEEECCCCCCCCcccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccccHHHHHhcccCceEEE
Confidence 58999999999 689999999999999999999999987 88999999543 34 4444 555688765
Q ss_pred EeCCCCCCCCCCCccccccccceeEEEccCCCCCCceEEEEEEECCCCCCCCC---h---------HHHhhhcc------
Q psy11141 217 KTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSS---T---------DGMQRTTL------ 278 (566)
Q Consensus 217 ~~~~~G~~~dg~~~~~~~~~~~s~a~~I~~~~~wp~L~ivilVv~~~~K~vsS---T---------~~mr~~v~------ 278 (566)
.. - ... ...++++.+.+-.+-.+.+++++...+..-+ . .+.+.+..
T Consensus 209 Df---~----~l~---------~~~vpl~~~~~~~~~~~~ivv~~s~~~h~l~~~~~Yn~Rr~Ec~~aa~~l~~~~~~~~ 272 (423)
T PLN02865 209 DC---K----TLD---------HKLVSLQFQQPGGEKPFKILLAFSGLRHALTNKPGYNLRVSECQEAARFLLEASGNDE 272 (423)
T ss_pred Ec---c----CCC---------cceeecCcccccCCCCeEEEEEeCCCchhhcccchhhHHHHHHHHHHHHHHHhcCCcc
Confidence 43 1 111 1133443211000112334444433322211 1 11111100
Q ss_pred -C--------C----------chHHHHHhhh--ccchHHHHHHHHHcCCHHHHHHHHHhchhhhhhcccccCCCceeccc
Q psy11141 279 -T--------S----------TLYEHRVNTI--VPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMND 337 (566)
Q Consensus 279 -t--------s----------~~~~~~v~~~--~~~~v~~li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p 337 (566)
. . +....|...+ -..|+.+.+.+|+++|++.||++|. .-|.-+++.+ .--.|
T Consensus 273 ~~~~Lr~~~~~~~~~~~~~l~~~l~~Ra~Hv~~E~~Rv~~~~~al~~~d~~~~g~lm~----~sh~Slrd~y---evS~~ 345 (423)
T PLN02865 273 LEPLLCNVEPEVYEAHKCKLEAVLARRAEHYFSENMRVIKGVEAWASGNLEEFGKLIS----ASGLSSIENY---ECGCE 345 (423)
T ss_pred chhhhhcCCHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH----HhhhhHHhhc---cCCcH
Confidence 0 0 0001121111 2467899999999999999999984 4676666532 11124
Q ss_pred cHHHHHHHHHHHHHhhCCceEEEEeCCC--cceEEeeccCCHHHHHHHHHhhCC
Q psy11141 338 TSHSIVRFVHEFNTVVGETKVAYTFDAG--PNACLYVLENTVPLLLSTLVQYFP 389 (566)
Q Consensus 338 ~s~~Ii~~v~~l~~~~G~~~~a~tsGAG--PnV~~l~~~~~~~~v~~~L~~~f~ 389 (566)
+...+++.+.+. .| ..++-++|+| ..+++|++++..+++.+.+.+.|.
T Consensus 346 eld~lv~~a~~~---~G-a~GaR~tGgGfGGc~vaLv~~~~~~~~~~~v~~~Y~ 395 (423)
T PLN02865 346 PLIQLYEILLKA---PG-VYGARFSGAGFRGCCVAFVDAEMAEEAASFVRDEYE 395 (423)
T ss_pred HHHHHHHHHHhc---CC-CeEEEEeccCCccEEEEEEchhHHHHHHHHHHHHHH
Confidence 444555444442 36 5678888776 677888888888989998887654
No 55
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.01 E-value=5.2e-09 Score=114.41 Aligned_cols=186 Identities=18% Similarity=0.200 Sum_probs=110.0
Q ss_pred ccccccchhhHHHHHHHHHHHhCCC---------------HHHHHHHHH------Hc---cC-CchhhhcCCeEEEEeCC
Q psy11141 166 AAGLASSAAGYSCLVFTLAYALGLN---------------TSEVSHIAR------QG---SG-SACRSMFGGFVRWKTLP 220 (566)
Q Consensus 166 aaGLGSSAA~aAAla~Aln~L~gL~---------------~eeLs~iAr------~G---SG-SaarSi~GGfV~w~~~~ 220 (566)
..|||||||..+|++.|+..+++.. .+++.++|. +| || +++.|+|||+ ++.+++
T Consensus 152 K~GLGSSAAvtVa~v~ALl~~~~~~~~~~~~~~~~~~~~~~~~i~kLA~~ah~~~qGk~GSG~DvAaavyGgi-~Y~rfd 230 (454)
T TIGR01219 152 KTGLGSSAAMTTALVAALLHYLGVVDLSDPDKEGKFGCSDLDVIHNLAQTAHCLAQGKVGSGFDVSAAVYGSQ-RYRRFS 230 (454)
T ss_pred ccCccHHHHHHHHHHHHHHHHhCCcccccccccccccccCHHHHHHHHHHHHHhhcCCCCCchhhhhhhcCce-EEEecC
Confidence 5999999999999999999999743 245555552 33 44 6899999995 566622
Q ss_pred CCCCCCCCCcccccc---c----cce-----------eEEEccCCCCCCceEEEEEEECCCCCCCCChHHHhhhccCCch
Q psy11141 221 EGQQSDGNGDIGRKQ---C----ELS-----------NAEQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRTTLTSTL 282 (566)
Q Consensus 221 ~G~~~dg~~~~~~~~---~----~~s-----------~a~~I~~~~~wp~L~ivilVv~~~~K~vsST~~mr~~v~ts~~ 282 (566)
| .||.+.+ . ... ..+++..+ ++|++++. +.. .-++|..|...+. ..
T Consensus 231 ~-------~~l~~~~~~~~~~~~~~~L~~~v~~~W~~~i~~l~lP---~~l~Llvg---dtg-~~ssT~~lV~~V~--~~ 294 (454)
T TIGR01219 231 P-------ELISFLQVAITGLPLNEVLGTIVKGKWDNKRTEFSLP---PLMNLFMG---DPG-GGSSTPSMVGKVK--KW 294 (454)
T ss_pred h-------hhhhhhhccccccchhhhHHHHhccCCCCceeeccCC---CCCEEEEE---cCC-CCcCcHHHHHHHH--HH
Confidence 1 1222111 0 000 11122211 24543333 222 2368888876541 12
Q ss_pred HHHHHhhhccchHHHHHHH----------------------------HHcC--------CHHHHHHHHHhchhhhhhccc
Q psy11141 283 YEHRVNTIVPSRCSGMEEA----------------------------LRAR--------DFPRFAELTMKDSNQFHACCL 326 (566)
Q Consensus 283 ~~~~v~~~~~~~v~~li~A----------------------------L~~~--------D~e~lgel~~~Dsn~LHa~~~ 326 (566)
++...+. ....++.|..+ +..+ |+..+.+.+.+++..|.++..
T Consensus 295 ~~~~p~~-s~~i~~~l~~aN~~~~~~l~~l~~~~~~~~~~y~~~~~~l~~~~~~~~~~~~~~~i~~~i~~~R~~Lr~~~~ 373 (454)
T TIGR01219 295 QMSDPEE-SRENWQNLSDANLELETKLNDLSKLAKDHWDVYLRVIKVLTSEKCVLHATEELLEAREAMLRIRRLMRQITE 373 (454)
T ss_pred HHHCHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhhhhhccccchhcccccHHHHHHHHHHHHHHHHHhhH
Confidence 2222221 22333333333 5545 788888888888878866655
Q ss_pred ccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCc--ceEEeeccC
Q psy11141 327 DTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGP--NACLYVLEN 375 (566)
Q Consensus 327 ~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGP--nV~~l~~~~ 375 (566)
. -+.....|...++++.+.++. | ..++.++|||- .+++|+..+
T Consensus 374 ~--sgv~IEp~~~t~Lld~~~~~~---G-vl~a~vpGAGGgDa~~~l~~~~ 418 (454)
T TIGR01219 374 E--ASVDIEPESQTQLLDSTMSLE---G-VLLAGVPGAGGFDAIFAITLGD 418 (454)
T ss_pred h--cCCcccCHHHHHHHHHHhhcC---C-eeEeecCCCCccceEEEEecCC
Confidence 3 345567788888888887764 5 45678899875 667776443
No 56
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2.7.1.6 from EC), homoserine (2.7.1.39 from EC), mevalonate (2.7.1.36 from EC) and phosphomevalonate (2.7.4.2 from EC) kinases contain, in their N-terminal section, a conserved Gly/Ser-rich region which is probably involved in the binding of ATP [, ]. This group of kinases has been called 'GHMP' (from the first letter of their substrates).; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 3F0N_B 1PIE_A 2AJ4_A 1K47_E 3GON_A 2R3V_C 3HUL_A 1KVK_A 2R42_A 3D4J_A ....
Probab=98.95 E-value=8.1e-10 Score=89.81 Aligned_cols=57 Identities=33% Similarity=0.515 Sum_probs=51.3
Q ss_pred EEEEEcCCCCccccccchhhHHHHHHHHHHHhCCC--HHHHHHHHHHcc-------C-CchhhhcCC
Q psy11141 156 HICSENNFPTAAGLASSAAGYSCLVFTLAYALGLN--TSEVSHIARQGS-------G-SACRSMFGG 212 (566)
Q Consensus 156 ~I~s~nnIP~aaGLGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~GS-------G-SaarSi~GG 212 (566)
+|+++++||+++|||||||.++|++.|++++++++ +++|.++|++++ | +.+.|+|||
T Consensus 1 ~i~i~s~iP~~~GLgSSaa~~~a~~~a~~~~~~~~~~~~~l~~~a~~~e~~~g~~~g~d~~~~~~GG 67 (67)
T PF00288_consen 1 DIEIDSNIPPGSGLGSSAALAVALAAALNKLFGLPLSKEELAKLAQEAERYIGKPSGIDDAASAYGG 67 (67)
T ss_dssp EEEEEESSTTTSSSSHHHHHHHHHHHHHHHHTTTSSBHHHHHHHHHHHHHHCSSSHSHHHHHHHHCS
T ss_pred CeEEEccCCCCCcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcCCCChhhHHHHHhCc
Confidence 68899999999999999999999999999999988 889999997654 2 568999998
No 57
>PTZ00290 galactokinase; Provisional
Probab=98.80 E-value=3.1e-07 Score=101.10 Aligned_cols=109 Identities=14% Similarity=0.151 Sum_probs=68.3
Q ss_pred cchHHHHHHHHH-------cCCHHHHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCC
Q psy11141 292 PSRCSGMEEALR-------ARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDA 364 (566)
Q Consensus 292 ~~~v~~li~AL~-------~~D~e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGA 364 (566)
..|+.+.+.++. ++|++.||++|..++..|...+. --.|+...+++.+.+ ..| ..++-++||
T Consensus 340 n~RV~~a~~al~~~~~l~~~~~~~~lG~lm~~sh~sL~~~~~-------vS~~elD~lv~~~~~---~~G-~~GaRlTGa 408 (468)
T PTZ00290 340 QIRTLEFIKLNDPELPLSREERFRKAGEILNAGHQGMRDLMK-------ITTPELDFIHELINE---EKG-VAGGRMMGG 408 (468)
T ss_pred HHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHH---hCC-CcEEEEecC
Confidence 456777777885 56799999998654433333222 223444444443322 236 557899988
Q ss_pred Cc--ceEEeeccCCHHHHHHHHHhhCCCCCCCCCccccCcccccCCCCCCCCCCCCCCCCCccEEEEccCCCCcEEcC
Q psy11141 365 GP--NACLYVLENTVPLLLSTLVQYFPPSSGISAPYIRGLEYLNILPPVQLPSFTPQPAGLLQYLISTKIGSGPKILD 440 (566)
Q Consensus 365 GP--nV~~l~~~~~~~~v~~~L~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~vG~Gp~~~~ 440 (566)
|- .+++|++++..+++.+.+.+.|....+ .+ -.++.+++++|+.++.
T Consensus 409 G~GGc~i~Lv~~~~~~~~~~~v~~~y~~~~g--------~~---------------------~~~~~~~~~~Ga~~~~ 457 (468)
T PTZ00290 409 GFGGCIILLLKKNAVDRVVAHVREKFKARFG--------VE---------------------NDVYPVVAGDGAFVVS 457 (468)
T ss_pred CCceEEEEEechhhHHHHHHHHHHHHHHhhC--------CC---------------------CcEEEEecCCCcEEEe
Confidence 85 555556677788888888876643210 00 1378899999999763
No 58
>KOG1511|consensus
Probab=98.78 E-value=3.3e-07 Score=95.99 Aligned_cols=193 Identities=18% Similarity=0.243 Sum_probs=116.7
Q ss_pred EEEEEEcCCCCccccccchhhHHHHHHHHHHHhCCC--H-----------HHHHHHHHHc--------cC-CchhhhcCC
Q psy11141 155 MHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLN--T-----------SEVSHIARQG--------SG-SACRSMFGG 212 (566)
Q Consensus 155 v~I~s~nnIP~aaGLGSSAA~aAAla~Aln~L~gL~--~-----------eeLs~iAr~G--------SG-SaarSi~GG 212 (566)
+.+.+.+..|.++|||||||-.||++.|+..+.|+- . +-+.+.|.+| || +.+=|.|||
T Consensus 132 ~~v~v~SelP~GaGLGSSAa~sv~lAtall~~~g~i~~p~~~~~~~e~~l~Li~~WAf~gE~~iHGtpSGiDnaV~t~Gg 211 (397)
T KOG1511|consen 132 LTVVVDSELPLGAGLGSSAAISVALATALLRLAGLIPPPGSNLSLAENDLALINKWAFEGEKCIHGTPSGIDNAVCTYGG 211 (397)
T ss_pred eEEEEeccCCCcCCcchhHHHHHHHHHHHHHHcccCCCCcchhccccchHHHHHHHHhccceeecCCCcccchhhhccCc
Confidence 788888899999999999999999999999987742 2 3455666655 55 678999999
Q ss_pred eEEEEeCCCCCCCCCCCccccccccceeEEEccCCCCCCceEEEEEEECCCCCCCCChHHHhhhc----cCCch-HHHHH
Q psy11141 213 FVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRTT----LTSTL-YEHRV 287 (566)
Q Consensus 213 fV~w~~~~~G~~~dg~~~~~~~~~~~s~a~~I~~~~~wp~L~ivilVv~~~~K~vsST~~mr~~v----~ts~~-~~~~v 287 (566)
+..+.+ |. + .+.++. .|.|+++ +++... .-+|+.|.+.+ ++-|. .+..+
T Consensus 212 ~i~f~k---g~----~------------~~~Lk~---~~~L~il--ltnTrv--~RnTk~lVa~Vr~~~~kfPevi~~i~ 265 (397)
T KOG1511|consen 212 LISFKK---GV----E------------IESLKH---LPPLRIL--LTNTRV--PRNTKALVAGVRELLEKFPEVIKAIF 265 (397)
T ss_pred eEEeec---Cc----c------------ceeccc---CCCceEE--EEcccc--CccHHHHHHHHHHHHHhhhHHHHHHH
Confidence 988876 52 1 334432 3677654 344332 23788776643 22221 22333
Q ss_pred hhhccchHHHHHHHHHc----CCHH---HHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEE
Q psy11141 288 NTIVPSRCSGMEEALRA----RDFP---RFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAY 360 (566)
Q Consensus 288 ~~~~~~~v~~li~AL~~----~D~e---~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~ 360 (566)
.. ..+...+....+.+ .+.. .+.++++.|...|.++--. + |....|+....++ | ..+.
T Consensus 266 ~a-id~is~ea~~il~~e~~~~~~~~Eq~L~eLi~iNq~LL~alGVs-H-------~~le~v~~~t~k~----g--i~sK 330 (397)
T KOG1511|consen 266 DA-IDEISLEAVWILQRENDEFSSPKEQKLEELIRINQDLLDALGVS-H-------PSLELVCTTTRKL----G--IHSK 330 (397)
T ss_pred HH-HHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHhHHHHHHhCCC-c-------HHHHHHHHHHHHh----C--ccee
Confidence 32 34444555555652 2332 4788887776677665442 2 3344444444443 5 3457
Q ss_pred EeCCCcceEEe--eccCCHHHHHHHHHhhC
Q psy11141 361 TFDAGPNACLY--VLENTVPLLLSTLVQYF 388 (566)
Q Consensus 361 tsGAGPnV~~l--~~~~~~~~v~~~L~~~f 388 (566)
+.|||-.-++| .+++..++..+.+++..
T Consensus 331 LTGAGgGGc~itlL~~~~~qe~i~~~ke~L 360 (397)
T KOG1511|consen 331 LTGAGGGGCVITLLKPGTEQEQIDKWKEEL 360 (397)
T ss_pred cccCCCCceEEEEECCCCchHHHHHHHHHH
Confidence 78777655555 44444445555555543
No 59
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=98.54 E-value=1.4e-07 Score=78.96 Aligned_cols=81 Identities=16% Similarity=0.135 Sum_probs=57.4
Q ss_pred HHHHHHcCCHHHHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCC--CcceEEee-cc
Q psy11141 298 MEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDA--GPNACLYV-LE 374 (566)
Q Consensus 298 li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGA--GPnV~~l~-~~ 374 (566)
|+.||.++|++.|+++++.+......... ..+.|+..++++.+++. | +.++.+||| ||+|++|| ++
T Consensus 1 m~~al~~~d~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~----G-a~~~~~sGsG~G~~v~~l~~~~ 69 (85)
T PF08544_consen 1 MIKALAEGDLELLGELMNENQENEPENYR------EVLTPEIDELKEAAEEN----G-ALGAKMSGSGGGPTVFALCKDE 69 (85)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHT------THHHHHHHHHHHHHHHT----T-ESEEEEETTSSSSEEEEEESSH
T ss_pred CHHHHHCcCHHHHHHHHHHhhhhcchHHH------HHcCHHHHHHHHHHHHC----C-CCceecCCCCCCCeEEEEECCH
Confidence 78999999999999998765432010011 23445555555444333 5 567899999 99999999 55
Q ss_pred CCHHHHHHHHHhhCC
Q psy11141 375 NTVPLLLSTLVQYFP 389 (566)
Q Consensus 375 ~~~~~v~~~L~~~f~ 389 (566)
++.+++.+++++.|+
T Consensus 70 ~~~~~v~~~l~~~~~ 84 (85)
T PF08544_consen 70 DDAERVAEALREHYK 84 (85)
T ss_dssp HHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHhCC
Confidence 668999999998774
No 60
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.07 E-value=0.00011 Score=74.69 Aligned_cols=196 Identities=17% Similarity=0.166 Sum_probs=120.3
Q ss_pred CCccEEEEEEcCCCCccccccchhhHHHHHHHHHHHhCCC--HHHHHHHHHHccCCchhhhcCCeEEEEeCCCCCCCCCC
Q psy11141 151 ADWKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLN--TSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSDGN 228 (566)
Q Consensus 151 ~~~~v~I~s~nnIP~aaGLGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~GSGSaarSi~GGfV~w~~~~~G~~~dg~ 228 (566)
...++.+.+.++||.|-|||||.|..||+++|.+..||-+ ..++.+++...+-+ =.-+|-+.+.+.. - .|.
T Consensus 80 ~~~~i~l~lqSsIPvgKG~ASSTADl~At~~A~A~~l~~~l~es~iakLcv~iEPt-DsiiF~~~tlFd~---r---~g~ 152 (293)
T COG4542 80 INTGIDLLLQSSIPVGKGMASSTADLVATARATARFLGRELRESEIAKLCVSIEPT-DSIIFDKATLFDQ---R---EGR 152 (293)
T ss_pred ecCCeeEEEeccccccccccccHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhcCCc-cceecccceeehh---c---cch
Confidence 3456889999999999999999999999999999999987 78899998877632 2346777776643 1 121
Q ss_pred CccccccccceeEEEccCCCCCCceEEEEEEECCCCCCCCChHHHhhhccCCchHHHHHhhhccchHHHHHHHHHcCCHH
Q psy11141 229 GDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRTTLTSTLYEHRVNTIVPSRCSGMEEALRARDFP 308 (566)
Q Consensus 229 ~~~~~~~~~~s~a~~I~~~~~wp~L~ivilVv~~~~K~vsST~~mr~~v~ts~~~~~~v~~~~~~~v~~li~AL~~~D~e 308 (566)
..+-+ ...|.|.++ ++. .+.+--|..+++............+ -....+.+.+|+..+|..
T Consensus 153 -----------~~~~~---g~~PpL~il--v~e--~~~~v~T~~y~q~~r~e~~~~~~~e--~~~l~~~v~~A~~~~~~~ 212 (293)
T COG4542 153 -----------VIEFL---GEMPPLHIL--VFE--GKGTVETVDYNQPPRGEKLLAPLAE--LGNLINLVEKALKVGDPK 212 (293)
T ss_pred -----------HHHhc---CCCCceEEE--EEc--CCCceeeeeccCCchhhhhhhhHHH--HHHHHHHHHHHHccCCHH
Confidence 12222 223666443 332 2233345555432101111111111 234578888999999999
Q ss_pred HHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCcceEEeeccC---CHHHHHHHHH
Q psy11141 309 RFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLEN---TVPLLLSTLV 385 (566)
Q Consensus 309 ~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV~~l~~~~---~~~~v~~~L~ 385 (566)
.+|+++.. +...|+.-+. .|...++.+.+++...- | + -..=+|.-+=+|.+.. +..++.-.+.
T Consensus 213 ~lG~AAT~-SAv~~Q~~LP--------K~~~~~lL~l~e~~~~~-G-v---~VAHSGtmlGli~D~~~~~d~~k~~~~l~ 278 (293)
T COG4542 213 LLGEAATL-SAVKNQDRLP--------KPGLNELLRLVEETCAI-G-V---IVAHSGTMLGLIYDRKYALDPRKLRVVLA 278 (293)
T ss_pred HHHHHHHH-HHHhhccccC--------chhHHHHHHHHHHhccc-c-e---EEeccCceEEeeeccccccchHHHHHHHH
Confidence 99999754 4566654442 35566777777777532 4 2 2245676555556543 3334444444
Q ss_pred hh
Q psy11141 386 QY 387 (566)
Q Consensus 386 ~~ 387 (566)
+.
T Consensus 279 r~ 280 (293)
T COG4542 279 RN 280 (293)
T ss_pred Hh
Confidence 43
No 61
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]
Probab=94.40 E-value=0.051 Score=56.31 Aligned_cols=55 Identities=33% Similarity=0.486 Sum_probs=36.5
Q ss_pred cccccchhhHHHHHHHHHHHh--CCC---HHH---HHHHH---H---HccC-CchhhhcCCeEEEEeCCCC
Q psy11141 167 AGLASSAAGYSCLVFTLAYAL--GLN---TSE---VSHIA---R---QGSG-SACRSMFGGFVRWKTLPEG 222 (566)
Q Consensus 167 aGLGSSAA~aAAla~Aln~L~--gL~---~ee---Ls~iA---r---~GSG-SaarSi~GGfV~w~~~~~G 222 (566)
-||||||+.+..++-.+.-.+ +.+ +.+ |+.+| + .||| +++.++||++++ .+++|+
T Consensus 108 tGlGSSAa~~tsLt~~lfls~~~~~nvd~k~eIhklaqiAhc~aQggIGSGfDiaaA~fGsiiy-rRF~p~ 177 (337)
T COG3890 108 TGLGSSAAVATSLTCGLFLSHANATNVDEKGEIHKLAQIAHCYAQGGIGSGFDIAAAIFGSIIY-RRFEPG 177 (337)
T ss_pred CCCcchhHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhCCCCccchhhHhhhcceEE-eecCcc
Confidence 799999999999884333333 222 344 44555 2 3477 889999999975 454444
No 62
>KOG4644|consensus
Probab=93.25 E-value=0.86 Score=50.91 Aligned_cols=193 Identities=15% Similarity=0.233 Sum_probs=98.8
Q ss_pred CccEEEEEEcCCCCccccccchhhHHHHHHHHHHHhCCC--HHH-----------HHHHHHHccC--CchhhhcCCeEEE
Q psy11141 152 DWKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLN--TSE-----------VSHIARQGSG--SACRSMFGGFVRW 216 (566)
Q Consensus 152 ~~~v~I~s~nnIP~aaGLGSSAA~aAAla~Aln~L~gL~--~ee-----------Ls~iAr~GSG--SaarSi~GGfV~w 216 (566)
..+++|+..++.|.++|||.|+--+.-.++|+..+.|.- .+- +-++-..|+| +-|-+++-|+-.-
T Consensus 689 ~~GfeihT~SdLPHGSGLGTSSIlA~TaLaAi~~aagr~~gTeaLiHailHtvlrlEQilTTGGGWQDQ~G~im~GIK~g 768 (948)
T KOG4644|consen 689 CCGFEIHTSSDLPHGSGLGTSSILACTALAAICAAAGRADGTEALIHAILHTVLRLEQILTTGGGWQDQCGAIMEGIKKG 768 (948)
T ss_pred cCceEeeccccCCCCCCcchHHHHHHHHHHHHHHhhccccchhHhHHHHHHHHHHHHHHhhcCCchhhhccchhhhhhhc
Confidence 357999999999999999999876666667777776643 222 2233345666 7788888887421
Q ss_pred EeCCCCCCCCCCCccccccccceeEEEccCCCCCC-ceEEEEEEECCCCCCCCChHHHhhhccCC--chH---HHHHhh-
Q psy11141 217 KTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWG-SMRVIILVVNDQAKSTSSTDGMQRTTLTS--TLY---EHRVNT- 289 (566)
Q Consensus 217 ~~~~~G~~~dg~~~~~~~~~~~s~a~~I~~~~~wp-~L~ivilVv~~~~K~vsST~~mr~~v~ts--~~~---~~~v~~- 289 (566)
.. + ....-+ ...++|..++.+. .|.--.+.| ++.| |.-+++++... .+| ++..++
T Consensus 769 r~-r-ael~~~-----------ie~eeiTipe~f~ekL~dhLLLV-YTGK----TRLAkNLLQdViRn~far~~a~~Q~a 830 (948)
T KOG4644|consen 769 RC-R-AELNHG-----------IEHEEITIPEEFREKLEDHLLLV-YTGK----TRLAKNLLQDVIRNFFARCKATKQKA 830 (948)
T ss_pred cc-h-hhccCC-----------ceeeeecCCHHHHHHHhhcEEEE-EeCc----hHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 00 0 000000 1223332221111 121122222 3333 44444332110 111 111111
Q ss_pred -hccchHHHHHHHHHcCCHHHHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCcce
Q psy11141 290 -IVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNA 368 (566)
Q Consensus 290 -~~~~~v~~li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV 368 (566)
--.+..++..+.+++|.++.+++..+.-+.+-. . | .|++..+ .-.++++++..-. .| ..+...|||-.-
T Consensus 831 h~l~~~tdecAegf~kGsl~LlgecL~~YweqKk-~-M--apgCEPl--~Vr~lldmLaph~--hg--esgw~AGAGGGG 900 (948)
T KOG4644|consen 831 HKLAEATDECAEGFEKGSLELLGECLEHYWEQKK-F-M--APGCEPL--NVRELLDMLAPHK--HG--ESGWAAGAGGGG 900 (948)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhh-c-c--CCCCCCC--cHHHHHHHhcccc--cc--ccchhccCCCCc
Confidence 012345677788999999999999875433211 1 1 2333322 3455555544322 23 334566788777
Q ss_pred EEee
Q psy11141 369 CLYV 372 (566)
Q Consensus 369 ~~l~ 372 (566)
|++.
T Consensus 901 FiYL 904 (948)
T KOG4644|consen 901 FIYL 904 (948)
T ss_pred EEEE
Confidence 7664
No 63
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=89.69 E-value=1.8 Score=44.67 Aligned_cols=51 Identities=20% Similarity=0.096 Sum_probs=39.9
Q ss_pred cccCCCCCch--------hhHHHHHHcCCCChHHHHHHHhhccccccccccCCeEEeec
Q psy11141 446 HLLNEAGAPK--------HLMFTLAYALGLNTSEVSHIARQGSGSACRSMFGGFVRWKT 496 (566)
Q Consensus 446 ~Lld~~Glp~--------ala~~~~~~~~~~~~~~s~~ar~gsgsa~rs~~g~~~~w~~ 496 (566)
.++-+.||-- ..+++..++++++.+++..+|+..++.++++++||++.+..
T Consensus 88 ~IP~~~GLGSSsA~aaA~l~al~~~~~~~l~~~~l~~la~~i~~D~~~~~~Gg~~~~~~ 146 (275)
T PRK14611 88 NIPVGAGLGGGSSNAAVVLKYLNELLGNPLSEEELFELASSISADAPFFLKGGFALGRG 146 (275)
T ss_pred CCCCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCeeecCCeEEEec
Confidence 3555566552 22455667889999999999999999999999999998754
No 64
>PRK01212 homoserine kinase; Provisional
Probab=78.88 E-value=9.6 Score=39.48 Aligned_cols=39 Identities=23% Similarity=0.343 Sum_probs=32.7
Q ss_pred HHHHHHcCCCChHHHHHHHhhcccc---ccccccCCeEEeec
Q psy11141 458 MFTLAYALGLNTSEVSHIARQGSGS---ACRSMFGGFVRWKT 496 (566)
Q Consensus 458 a~~~~~~~~~~~~~~s~~ar~gsgs---a~rs~~g~~~~w~~ 496 (566)
+++..++++++.+++..+|+.+.++ .+.++|||++.+..
T Consensus 109 al~~l~~~~l~~~eL~~~a~~~e~~~ddv~~~l~GG~~~~~~ 150 (301)
T PRK01212 109 AANELAGLPLSKEELLQLATEGEGHPDNVAPALLGGLVLALE 150 (301)
T ss_pred HHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHhCCEEEEEE
Confidence 4556678899999999999999884 56899999999864
No 65
>KOG4519|consensus
Probab=76.90 E-value=3.1 Score=44.58 Aligned_cols=53 Identities=30% Similarity=0.493 Sum_probs=36.0
Q ss_pred cccccchhhHHHHHHHHHHHhCC-----C-------------HHHHHHHH------HHccC-CchhhhcCCeEEEEeCC
Q psy11141 167 AGLASSAAGYSCLVFTLAYALGL-----N-------------TSEVSHIA------RQGSG-SACRSMFGGFVRWKTLP 220 (566)
Q Consensus 167 aGLGSSAA~aAAla~Aln~L~gL-----~-------------~eeLs~iA------r~GSG-SaarSi~GGfV~w~~~~ 220 (566)
-|||||||-.-+++.++..-++. + .-.|.++| ..||| +++++.||-.. +.+++
T Consensus 153 TGLGSSAam~T~lv~~ll~sl~~~~~d~~~k~~k~d~s~~~viHnlAQ~aHC~AQGKvGSGFDV~aA~yGS~r-YrRF~ 230 (459)
T KOG4519|consen 153 TGLGSSAAMTTALVAALLHSLGVVDLDDPCKEGKFDCSDLDVIHNLAQTAHCLAQGKVGSGFDVSAAVYGSQR-YRRFS 230 (459)
T ss_pred cCccchHHHHHHHHHHHHHhhcceecCCCccccccCchHHHHHHHHHHHHHHHhcCCccCCcceehhhcccee-eeeCC
Confidence 69999999999999766555531 1 12344444 24577 88999999985 44433
No 66
>KOG0631|consensus
Probab=60.44 E-value=8.3 Score=43.13 Aligned_cols=46 Identities=26% Similarity=0.338 Sum_probs=34.6
Q ss_pred ccEEEEEEcCCCCccccccchhhHHHHHHHHHHHh-CCC----HHHHHHHH
Q psy11141 153 WKMHICSENNFPTAAGLASSAAGYSCLVFTLAYAL-GLN----TSEVSHIA 198 (566)
Q Consensus 153 ~~v~I~s~nnIP~aaGLGSSAA~aAAla~Aln~L~-gL~----~eeLs~iA 198 (566)
-++.|...-++|++.||-||||-..+...|..++. |-+ ++++..+-
T Consensus 141 vGl~~l~~g~vPtgsgLsSsaa~~c~a~lA~~~~~~gpn~~~~kkd~~~i~ 191 (489)
T KOG0631|consen 141 VGLSILNDGSVPTGSGLSSSAAWLCAAALATLKLNLGPNFIISKKDLATIT 191 (489)
T ss_pred cceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCcccchhhhhcce
Confidence 37888888899999999999776666666666665 554 66666655
No 67
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=58.63 E-value=29 Score=35.72 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=30.1
Q ss_pred HHHHHHcCCCChHHHHHHHhhccccccccccCCeEEe
Q psy11141 458 MFTLAYALGLNTSEVSHIARQGSGSACRSMFGGFVRW 494 (566)
Q Consensus 458 a~~~~~~~~~~~~~~s~~ar~gsgsa~rs~~g~~~~w 494 (566)
+++.+++++++.+++..+|+..++-.+-+++||++.-
T Consensus 112 al~~~~~~~l~~~~l~~~a~~~g~dv~~~~~Gg~~~~ 148 (286)
T PRK00128 112 GLNKLWNLGLSLEELAEIGLEIGSDVPFCIYGGTALA 148 (286)
T ss_pred HHHHHhcCCcCHHHHHHHHHHhCCCCCeEeeCCeEEE
Confidence 4556678899999999999876667789999998764
No 68
>PRK01123 shikimate kinase; Provisional
Probab=51.32 E-value=22 Score=36.83 Aligned_cols=51 Identities=22% Similarity=0.324 Sum_probs=36.7
Q ss_pred cccCCCCCch--------hhHHHHHHcCCCChHHHHHHHhhc--------cc---cccccccCCeEEeec
Q psy11141 446 HLLNEAGAPK--------HLMFTLAYALGLNTSEVSHIARQG--------SG---SACRSMFGGFVRWKT 496 (566)
Q Consensus 446 ~Lld~~Glp~--------ala~~~~~~~~~~~~~~s~~ar~g--------sg---sa~rs~~g~~~~w~~ 496 (566)
.++-..||-. ..+++..++++++.+++.++|+.. .| -.+.|+||||+.+..
T Consensus 83 ~IP~~~GLGSSaA~~va~~~a~~~~~~~~l~~~el~~la~~~e~~~~~~~~g~~~d~~~~~~GG~~~~~~ 152 (282)
T PRK01123 83 EIPLASGLKSSSAAANATVLATLDALGEDLDDLDILRLGVKASRDAGVTVTGAFDDACASYFGGVTVTDN 152 (282)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhccccccccCchhHHHHHHhCCEEEEcC
Confidence 3555666653 335556678899999999998872 23 467899999998764
No 69
>TIGR00549 mevalon_kin mevalonate kinase. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.
Probab=43.63 E-value=26 Score=35.57 Aligned_cols=39 Identities=23% Similarity=0.419 Sum_probs=30.9
Q ss_pred HHHHHHcCCCChHHHHHHHhhc--------ccc-ccccccCCeEEeec
Q psy11141 458 MFTLAYALGLNTSEVSHIARQG--------SGS-ACRSMFGGFVRWKT 496 (566)
Q Consensus 458 a~~~~~~~~~~~~~~s~~ar~g--------sgs-a~rs~~g~~~~w~~ 496 (566)
+++.+++++++.+++..+|+.. ||. .+.|+|||++.|+.
T Consensus 106 al~~~~~~~~~~~~l~~~a~~~E~~~~G~~sG~D~~~~~~Gg~~~~~~ 153 (273)
T TIGR00549 106 ALADYFGSELSKEELAKLANEAEKIAHGKPSGIDTATSTYGGPVYFEK 153 (273)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHhCCCCchHhHHHHhcCCeEEEEc
Confidence 4556678889999999999953 333 67899999998876
No 70
>TIGR01920 Shik_kin_archae shikimate kinase. This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.
Probab=43.61 E-value=64 Score=33.13 Aligned_cols=40 Identities=18% Similarity=0.244 Sum_probs=29.9
Q ss_pred hhHHHHHHcCCCChHHHHHHHhh--------cccc---ccccccCCeEEee
Q psy11141 456 HLMFTLAYALGLNTSEVSHIARQ--------GSGS---ACRSMFGGFVRWK 495 (566)
Q Consensus 456 ala~~~~~~~~~~~~~~s~~ar~--------gsgs---a~rs~~g~~~~w~ 495 (566)
..+++.+++++++.+++-++|+. +.|+ ++-|+|||++...
T Consensus 90 ~~al~~~~~~~l~~~~l~~la~~~e~~~~~~~~~~~~D~~~~~~gG~~~~~ 140 (261)
T TIGR01920 90 VEAVLKAKGVEIDDIDILRLGARLSKDAGLSVTGAFDDAAASYLGGIVITD 140 (261)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHhCCEEEEe
Confidence 33556778889999999999987 3333 3568999997754
No 71
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=39.44 E-value=31 Score=35.96 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=32.3
Q ss_pred HHHHHHcCCCChHHHHHHHhhcccc---ccccccCCeEEeec
Q psy11141 458 MFTLAYALGLNTSEVSHIARQGSGS---ACRSMFGGFVRWKT 496 (566)
Q Consensus 458 a~~~~~~~~~~~~~~s~~ar~gsgs---a~rs~~g~~~~w~~ 496 (566)
+++..++++++.+++-++|+.+.++ .+.++|||++.|..
T Consensus 108 a~~~l~~~~l~~~el~~~a~~~E~h~Dnv~~~l~GG~~~~~~ 149 (302)
T TIGR00191 108 AANELCGLPLSKERLLDYASELEGHPDNVAPALLGGFQLAFV 149 (302)
T ss_pred HHHHHcCCCcCHHHHHHHHHHhcCCcccHHHHhccCEEEEEE
Confidence 4556678899999999999988875 57899999999864
No 72
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=34.83 E-value=2.3e+02 Score=29.63 Aligned_cols=38 Identities=26% Similarity=0.310 Sum_probs=28.2
Q ss_pred HHHHHHcCCCChHHHHHHHh-hccccccccccCCeEEeec
Q psy11141 458 MFTLAYALGLNTSEVSHIAR-QGSGSACRSMFGGFVRWKT 496 (566)
Q Consensus 458 a~~~~~~~~~~~~~~s~~ar-~gsgsa~rs~~g~~~~w~~ 496 (566)
+++..++++++.+++-.+|. .|+. .+=+++||++.+..
T Consensus 114 al~~~~~~~l~~~~l~~~a~~~g~d-v~~~~~GG~~~~~~ 152 (312)
T PRK02534 114 GLNLLWGLGLTQPELESLAAELGSD-VPFCIAGGTQLCFG 152 (312)
T ss_pred HHHHHhCCCcCHHHHHHHHHHhCCC-CcEEeECCeEEEEC
Confidence 45566788999999999985 5543 35578999988764
No 73
>KOG0631|consensus
Probab=23.47 E-value=1.5e+02 Score=33.52 Aligned_cols=71 Identities=14% Similarity=0.149 Sum_probs=41.5
Q ss_pred HHHHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCcceEEe--eccCCHHHHHHHH
Q psy11141 307 FPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLY--VLENTVPLLLSTL 384 (566)
Q Consensus 307 ~e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV~~l--~~~~~~~~v~~~L 384 (566)
+..+|++|+.-+..-|..+.-+. |+..++.+.+.+. |+ .++-++|||-.-+++ ++.++.+++.+.+
T Consensus 387 ~~~~g~LmneS~~Sc~~~yEcsc-------pel~qL~kiala~----g~-~gaRlTGaGwGGc~v~lvp~d~~~~~~~~~ 454 (489)
T KOG0631|consen 387 LADFGRLMNESHRSCDVLYECSC-------PELDQLCKIALAN----GG-VGARLTGAGWGGCTVALVPADLVDFAVAAL 454 (489)
T ss_pred HHHHHHHhhhhhHHHHHHHhcCC-------HhHHHHHHHHHhc----CC-ccceeeccccccceeeeccccchHHHHHhh
Confidence 55568888654334444433333 3445555554443 42 347788998655444 4556788888888
Q ss_pred HhhCC
Q psy11141 385 VQYFP 389 (566)
Q Consensus 385 ~~~f~ 389 (566)
.+.|-
T Consensus 455 ~~~~Y 459 (489)
T KOG0631|consen 455 KEIYY 459 (489)
T ss_pred hhhhh
Confidence 76653
Done!