Query psy11141
Match_columns 566
No_of_seqs 406 out of 1432
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 19:03:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11141.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11141hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f0n_A Mevalonate pyrophosphat 100.0 1.8E-75 6.2E-80 621.7 29.8 357 70-456 27-412 (414)
2 3lto_A Mevalonate diphosphate 100.0 8.2E-61 2.8E-65 497.2 26.7 282 70-390 6-310 (323)
3 2hke_A Diphosphomevalonate dec 100.0 7.1E-59 2.4E-63 491.2 30.0 352 70-449 9-379 (380)
4 3qt5_A Mevalonate diphosphate 100.0 1.1E-56 3.8E-61 467.1 27.0 291 70-390 13-315 (332)
5 1fi4_A Mevalonate 5-diphosphat 100.0 6.2E-56 2.1E-60 474.4 27.9 357 71-455 30-414 (416)
6 2gs8_A Mevalonate pyrophosphat 100.0 3.2E-44 1.1E-48 368.2 26.4 278 71-386 13-302 (317)
7 3hul_A HSK, HK, homoserine kin 100.0 1E-27 3.4E-32 245.6 23.7 243 101-389 15-272 (298)
8 1h72_C HK, homoserine kinase; 100.0 5.5E-27 1.9E-31 236.7 24.0 245 102-389 16-282 (296)
9 3pyf_A 4-diphosphocytidyl-2-C- 99.9 3.7E-23 1.3E-27 212.6 20.9 236 103-387 27-281 (306)
10 2hfs_A Mevalonate kinase, puta 99.9 1.5E-21 5.1E-26 200.3 27.5 249 101-390 31-315 (332)
11 2oi2_A Mevalonate kinase; enzy 99.9 2.2E-21 7.4E-26 194.8 21.7 243 101-389 23-284 (292)
12 2v8p_A 4-diphosphocytidyl-2-C- 99.9 1.9E-22 6.5E-27 202.7 13.6 215 105-382 31-260 (271)
13 4hac_A Mevalonate kinase; GHMP 99.9 3.4E-20 1.2E-24 191.2 23.1 238 100-387 38-304 (321)
14 1uek_A 4-(cytidine 5'-diphosph 99.8 1.1E-20 3.8E-25 189.8 17.0 220 105-386 27-256 (275)
15 1pie_A Galactokinase; galactos 99.8 6.7E-20 2.3E-24 195.0 23.7 273 102-439 67-416 (419)
16 2cz9_A Probable galactokinase; 99.8 3.5E-20 1.2E-24 190.9 19.1 243 105-389 23-330 (350)
17 1kkh_A Mevalonate kinase; mixe 99.8 3.2E-19 1.1E-23 181.8 22.3 236 102-387 24-306 (317)
18 2x7i_A Mevalonate kinase; tran 99.8 4E-19 1.4E-23 180.4 22.2 246 101-388 24-297 (308)
19 1wuu_A Galactokinase; galactos 99.8 2.4E-18 8.3E-23 181.8 24.2 222 153-439 130-397 (399)
20 2pg9_A Phosphomevalonate kinas 99.8 2.3E-18 8E-23 178.7 21.5 247 101-387 22-321 (337)
21 2ww4_A 4-diphosphocytidyl-2C-m 99.8 7.7E-19 2.6E-23 178.2 14.3 213 106-385 30-262 (283)
22 3gon_A Phosphomevalonate kinas 99.7 1.4E-16 4.6E-21 162.2 22.8 253 100-386 18-318 (335)
23 3k17_A LIN0012 protein; protei 99.7 1.5E-16 5.1E-21 167.2 22.3 259 99-387 22-342 (365)
24 3k85_A D-glycero-D-manno-hepto 99.7 2.7E-17 9.3E-22 172.1 14.6 247 106-387 32-322 (357)
25 1kvk_A MK, mevalonate kinase; 99.7 1.8E-16 6.3E-21 167.0 20.0 196 152-389 126-361 (395)
26 2a2c_A N-acetylgalactosamine k 99.7 1.5E-15 5.1E-20 164.8 24.3 251 101-390 73-450 (478)
27 3f0n_A Mevalonate pyrophosphat 99.3 7.5E-13 2.5E-17 141.2 7.2 96 446-556 131-242 (414)
28 3lto_A Mevalonate diphosphate 99.1 1.3E-10 4.3E-15 120.7 9.9 80 445-546 99-191 (323)
29 3v2u_C Protein GAL3; rossmann 99.0 1.8E-09 6.2E-14 118.5 15.6 114 292-439 393-518 (520)
30 1fi4_A Mevalonate 5-diphosphat 98.8 7.3E-09 2.5E-13 110.6 8.9 90 445-546 130-227 (416)
31 3qt5_A Mevalonate diphosphate 98.8 9.7E-09 3.3E-13 106.5 8.0 76 457-546 121-196 (332)
32 2hke_A Diphosphomevalonate dec 98.7 1.3E-08 4.4E-13 107.3 8.2 87 445-546 104-198 (380)
33 2gs8_A Mevalonate pyrophosphat 97.6 0.0001 3.6E-09 74.9 8.5 89 434-546 91-187 (317)
34 2v8p_A 4-diphosphocytidyl-2-C- 91.6 0.74 2.5E-05 45.4 9.9 50 446-495 89-146 (271)
35 1h72_C HK, homoserine kinase; 87.6 1.1 3.7E-05 44.3 7.4 51 446-496 84-151 (296)
36 2hfs_A Mevalonate kinase, puta 74.7 6 0.0002 39.6 7.4 51 446-496 105-172 (332)
37 2oi2_A Mevalonate kinase; enzy 73.5 9.2 0.00031 37.2 8.2 39 458-496 102-149 (292)
38 1uek_A 4-(cytidine 5'-diphosph 72.3 6.8 0.00023 38.3 6.9 82 446-557 84-173 (275)
39 2ww4_A 4-diphosphocytidyl-2C-m 71.0 7 0.00024 38.8 6.7 50 446-496 97-154 (283)
40 3hul_A HSK, HK, homoserine kin 70.7 4.7 0.00016 40.4 5.5 48 446-493 79-137 (298)
41 4hhu_A OR280; engineered prote 50.4 46 0.0016 29.6 7.3 46 341-387 57-104 (170)
42 2x7i_A Mevalonate kinase; tran 38.4 43 0.0015 32.8 6.0 51 446-496 94-161 (308)
43 3pyf_A 4-diphosphocytidyl-2-C- 36.1 30 0.001 34.6 4.5 38 458-496 116-153 (306)
44 1pie_A Galactokinase; galactos 35.2 68 0.0023 33.3 7.1 51 446-496 149-219 (419)
45 1kvk_A MK, mevalonate kinase; 33.5 61 0.0021 33.2 6.4 50 447-496 137-218 (395)
46 1kkh_A Mevalonate kinase; mixe 32.8 24 0.00081 34.9 3.0 49 446-494 107-172 (317)
47 1wuu_A Galactokinase; galactos 25.7 1E+02 0.0034 31.6 6.4 46 446-491 139-202 (399)
No 1
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=100.00 E-value=1.8e-75 Score=621.67 Aligned_cols=357 Identities=46% Similarity=0.817 Sum_probs=310.7
Q ss_pred CCCcceecccccccCCcccccccccccccccccCCCccceeecCCCceeEEEEEecCCCCccEEEEcCccchh----hhh
Q psy11141 70 ISAPYIRGLEYLNILPPVQVKLSNNDIITLKSELNGIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKKLAE----QEK 145 (566)
Q Consensus 70 ~~~~~i~~~~~~~~~~~~~~k~~g~~D~~l~lP~ndSLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~~~~~----~~~ 145 (566)
++|+|||+|||||| +|++||||.|+|||+||++++|||+|+|++++++++|++||||++.+. ..+
T Consensus 27 ~A~~NIAlIKYWGK-----------rd~~l~lP~n~SiS~TL~~~~l~T~TtV~~s~~~~~D~i~LNG~~~~~~~~ri~~ 95 (414)
T 3f0n_A 27 TAPVNIAVIKYWGK-----------RDEALILPINSSLSVTLHQDQLKTTTTVAISKDFTEDRIWLNGREEDVGQPRLQA 95 (414)
T ss_dssp EECCEEEEECCCCE-----------EETTTTEESSCEEEEEBCTTTSCEEEEEEECTTCCSCEEEETTEEECTTCHHHHH
T ss_pred Eecccchhhhhccc-----------ccccccCCCCCceEEEecCCCceEEEEEEEecCCCceEEEECCEecCcccHHHHH
Confidence 38999999999986 999999999999999999888999999999998888999999976321 111
Q ss_pred hh-----hccC--------------CccEEEEEEcCCCCccccccchhhHHHHHHHHHHHhCCCHHHHHHHHHHccCCch
Q psy11141 146 SS-----REMA--------------DWKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLNTSEVSHIARQGSGSAC 206 (566)
Q Consensus 146 ~l-----~~~~--------------~~~v~I~s~nnIP~aaGLGSSAA~aAAla~Aln~L~gL~~eeLs~iAr~GSGSaa 206 (566)
.+ .++. ..+++|+++|+||+++|||||||++||++.|+|+++++ .+||+++||+|+||+|
T Consensus 96 ~l~~iR~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~aaGLgSSaA~~aA~~~a~n~l~~l-~~el~~lA~~~sGs~~ 174 (414)
T 3f0n_A 96 CLREIRRLARKRRSTEDGDTLPLSLSYKVHVASVNNFPTAAGLASSAAGYACLAYTLAQVYGV-EGDLSEVARRGSGSAC 174 (414)
T ss_dssp HHHHHHHHHHC-------CCHHHHHHSCEEEEEEECCCGGGCCCHHHHHHHHHHHHHHHHHTC-CSCCHHHHHHHCGGGG
T ss_pred HHHHHHHHhcccccccccccccccccCcEEEEEEeCCCCCcCcchhHHHHHHHHHHHHHHhCC-hHHHHHHHHHhCCCcc
Confidence 11 1111 26899999999999999999999999999999999999 6899999999999999
Q ss_pred hhhcCCeEEEEeCCCCCCCCCCCccccccccceeEEEccCCCCCCceEEEEEEECCCCCCCCChHHHhhhccCCchHHHH
Q psy11141 207 RSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRTTLTSTLYEHR 286 (566)
Q Consensus 207 rSi~GGfV~w~~~~~G~~~dg~~~~~~~~~~~s~a~~I~~~~~wp~L~ivilVv~~~~K~vsST~~mr~~v~ts~~~~~~ 286 (566)
||+|||||+|.. +...|+.+ +++++++++.+||+|++++++++..+|+++||++|+++++++++|++|
T Consensus 175 ~s~~GG~v~w~~---~~~~d~~d---------s~a~~i~~~~~wp~L~ivvlv~~~~~K~vsST~~mr~~l~ts~~~~~~ 242 (414)
T 3f0n_A 175 RSLYGGFVEWQM---GEQADGKD---------SIARQIAPEWHWPQLRILILVVSADKKQTGSTVGMQTSVETSTLLKFR 242 (414)
T ss_dssp GGGSSSEEEECC---CSCTTCTT---------CCEEEEECTTSCTTEEEEEEEESCCC-CCCHHHHHHHHHHHCHHHHHH
T ss_pred hHhhCCEEEEEe---ccCCCCCc---------eEEEEcccccCCCCceEEEEEeCccccCCCchHHHHhhcccCccHHHH
Confidence 999999999987 64334544 778898766789999999999999999999999999999999999999
Q ss_pred HhhhccchHHHHHHHHHcCCHHHHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCc
Q psy11141 287 VNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGP 366 (566)
Q Consensus 287 v~~~~~~~v~~li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGP 366 (566)
+++++..+++.|+.||.++||+.|++++|+|+++||++|++++|++.||+|.+.++++.++++|+..|.+.++|||||||
T Consensus 243 v~~~~~~~~~~l~~AL~~gD~~~~g~l~e~Ds~~lHa~~~~s~P~~~yl~p~s~~ii~~v~~~r~~~~g~~~~~tsdAGP 322 (414)
T 3f0n_A 243 AESVVPERMKEMTRCIQEQDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQTKVAYTFDAGP 322 (414)
T ss_dssp HHHTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECCSSS
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhccCCCeeeeCccHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 98645899999999999999999999999999999999999999999999999999999999986543378999999999
Q ss_pred ceEEeeccCCHHHHHHHHHhhCCCCCCCCCccccCcccccCCCCCCCC-----CCCCCC-CCCccEEEEccCCCCcEEcC
Q psy11141 367 NACLYVLENTVPLLLSTLVQYFPPSSGISAPYIRGLEYLNILPPVQLP-----SFTPQP-AGLLQYLISTKIGSGPKILD 440 (566)
Q Consensus 367 nV~~l~~~~~~~~v~~~L~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~ii~t~vG~Gp~~~~ 440 (566)
||++||++++.++|.+.|++.|+...+ ..+|++|++ ++...++ .+..++ +++|+|||+|+||+||++++
T Consensus 323 nv~vl~~~~~~~~v~~~l~~~f~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~g~gp~~~~ 397 (414)
T 3f0n_A 323 NAVIFTLEDTVAEFVAAVRHSFPPAAN-GDKFLKGLQ----VAPVLLSDELKAALVVEPSPGGVQYIIATQVGPGPQVLD 397 (414)
T ss_dssp CEEEEEEHHHHHHHHHHHHHHSCCSCC---CCEEESC----CCCCCCCHHHHHHSCSSCCTTSEEEEEEEEBCCCCEEEC
T ss_pred CEEEEEecccHHHHHHHHHHhcCCCCC-cccccccCc----cccccCChhhhhcccccccCCceeEEEECCCCCCCEECC
Confidence 999999999999999999999987553 567888866 3333333 345555 89999999999999999998
Q ss_pred CCCCCcccCCCCCchh
Q psy11141 441 DIPNNHLLNEAGAPKH 456 (566)
Q Consensus 441 ~~~~~~Lld~~Glp~a 456 (566)
+ ++++|+|++|+|+.
T Consensus 398 ~-~~~~l~~~~g~~~~ 412 (414)
T 3f0n_A 398 D-THDHLLGQDGLPQR 412 (414)
T ss_dssp C-GGGCSBCTTSSBC-
T ss_pred c-hhHhcCCCCCCcCC
Confidence 7 88999999999963
No 2
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=100.00 E-value=8.2e-61 Score=497.16 Aligned_cols=282 Identities=20% Similarity=0.261 Sum_probs=252.4
Q ss_pred CCCcceecccccccCCcccccccccccccccccCCCccceeecCCCceeEEEEEecCCCCccEE---EEcCc---cch--
Q psy11141 70 ISAPYIRGLEYLNILPPVQVKLSNNDIITLKSELNGIEPIEITFQRMHAKTSVALSPDFTEDKL---WLNGK---KLA-- 141 (566)
Q Consensus 70 ~~~~~i~~~~~~~~~~~~~~k~~g~~D~~l~lP~ndSLSltLd~~~lyt~TtV~~s~~~~~d~i---~lnG~---~~~-- 141 (566)
.+|||||+|||||| +|++||||.|+|||+||+ .+||+|+|++ +++++|++ +|||+ ...
T Consensus 6 ~a~~nialiKYwGk-----------~d~~l~lP~n~SiS~tl~--~~~t~T~v~~-~~~~~d~~~~~~lng~~~~~~~~~ 71 (323)
T 3lto_A 6 QAPANIALIKYMGK-----------KDENSNLPDNSSLSYTLS--NLLSSVKLEK-LPTKKDIWEPLTIPGAPEFNLSVE 71 (323)
T ss_dssp EEEEEEEEECCTTC-----------BCTTTCCBSSCEEEEEEE--EEEEEEEEEE-CSSSSCEECCBCTTSSBCCCCCSH
T ss_pred EecchhHHhHhcCc-----------ccccccCCCCCceeEEcC--CCeeEEEEEe-cCCCCCeeeeEEECCEeccccccc
Confidence 58999999999986 999999999999999999 7999999999 87888999 99998 321
Q ss_pred h-------hhhhh-hccCCccEEEEEEcCCCCccccccchhhHHHHH----HHHHHHhCCC---HHHHHHHHHHccCCch
Q psy11141 142 E-------QEKSS-REMADWKMHICSENNFPTAAGLASSAAGYSCLV----FTLAYALGLN---TSEVSHIARQGSGSAC 206 (566)
Q Consensus 142 ~-------~~~~l-~~~~~~~v~I~s~nnIP~aaGLGSSAA~aAAla----~Aln~L~gL~---~eeLs~iAr~GSGSaa 206 (566)
. .++.+ .++...+++|+++|+||+++|||||||++||++ .|+|+++|++ ++||+++||+|+||+|
T Consensus 72 ~~~~~~~~i~~~l~~~~~~~gv~I~~~n~IP~aaGLgSSAA~~aA~~~~~~~aln~l~gl~l~s~~eL~~lA~~gsGsaa 151 (323)
T 3lto_A 72 AQKRFIDHLVRLKEYFGYVGGFLIQSSNNFPHSSGLASSASSFAALTKCASIALSELTQKPLPSIDEQAQLSRLGSGSSC 151 (323)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCEEEEEEESSCTTTTCCCHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHTTCGGGG
T ss_pred cchhHHHHHHHHHHHhCCCCCEEEEEEeCCCCccCcchhHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCcc
Confidence 1 11222 245677999999999999999999999999999 9999998865 6899999999999999
Q ss_pred hhhcCCeEEEEeCCCCCCCCCCCccccccccceeEEEccCCCCCCceEEEEEEECCCCCCCCChHHHhhhccCCchHHHH
Q psy11141 207 RSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRTTLTSTLYEHR 286 (566)
Q Consensus 207 rSi~GGfV~w~~~~~G~~~dg~~~~~~~~~~~s~a~~I~~~~~wp~L~ivilVv~~~~K~vsST~~mr~~v~ts~~~~~~ 286 (566)
||+|||+|+|.. | +.+++. .+||+++++++++++..+.++||++|+. +++++++++|
T Consensus 152 ~si~GG~v~~~~---g-----------------~~~~l~--~~~~~l~~~v~vi~~~~~~vsT~~~~~~-l~~~~~~~~~ 208 (323)
T 3lto_A 152 RSFYAPWALWTG---D-----------------KVSAID--LPYKDLLHQVIVISSQEKEIPSRVAHKL-VKTSPFYETR 208 (323)
T ss_dssp GGGSCSEEEEET---T-----------------EEEECC--CSCCSCEEEEEECCCCTTCCCHHHHHHH-GGGSTTTTTH
T ss_pred hhhhCCEEEEec---C-----------------cEEEcc--CCCCCCeEEEEEECCCCCCCCCHHHHhh-cccChhHHHH
Confidence 999999999975 4 255663 3488999988888888889999999998 6899999999
Q ss_pred HhhhccchHHHHHHHHHcCCHHHHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCc
Q psy11141 287 VNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGP 366 (566)
Q Consensus 287 v~~~~~~~v~~li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGP 366 (566)
+++ ++.+++.|++||+++||+.|++++|.|+++||+++++++|++.||+|++.++++.++++|+..| +.++|||||||
T Consensus 209 ~~~-~~~~~~~l~~AL~~gD~~~l~~~~~~d~~~LHa~~~~~~P~~~~l~p~s~~i~~~v~~~r~~~G-~~~~~tsgAGP 286 (323)
T 3lto_A 209 SER-AEANLKLLLNAFENKDWTSIYQICWHEFLDMHQLFKTCEKPFSYITDNTLHILSVIEKFWNEKG-DGPVVTMDAGP 286 (323)
T ss_dssp HHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHHHHS-CCCEEECCSSS
T ss_pred HHH-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhHHHhccCCCceecCchHHHHHHHHHHHHHhCC-CeEEEEECCCC
Confidence 876 7899999999999999999999999999999999999999999999999999999999995448 78999999999
Q ss_pred ceEEeeccCCHHHHHHHHHhhCCC
Q psy11141 367 NACLYVLENTVPLLLSTLVQYFPP 390 (566)
Q Consensus 367 nV~~l~~~~~~~~v~~~L~~~f~~ 390 (566)
||+++|++++.++|.+.|++.|+.
T Consensus 287 nv~~l~~~~~~~~v~~~l~~~~~~ 310 (323)
T 3lto_A 287 NVHLLYRSDQTDLARQFKSDHLVG 310 (323)
T ss_dssp CEEEEECGGGHHHHHHHHHHHTTT
T ss_pred CeEEEEecccHHHHHHHHHHHhHh
Confidence 999999999999999999988865
No 3
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Probab=100.00 E-value=7.1e-59 Score=491.25 Aligned_cols=352 Identities=35% Similarity=0.557 Sum_probs=287.9
Q ss_pred CCCcceecccccccCCccccccccccc--ccccccCCCccceeecCCCceeEEEEEecCCCCccEEEEcCccchhhh---
Q psy11141 70 ISAPYIRGLEYLNILPPVQVKLSNNDI--ITLKSELNGIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKKLAEQE--- 144 (566)
Q Consensus 70 ~~~~~i~~~~~~~~~~~~~~k~~g~~D--~~l~lP~ndSLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~~~~~~~--- 144 (566)
.+++|||+|||||| || .++++|.|||||+||+++.+|++|+|+.+++.+++++++||+..+..+
T Consensus 9 ~A~~Nial~ky~Gk-----------rddg~~~~vP~~dslglaL~~~~l~~~~~v~~~~~~~~~~i~i~g~~~~~~~~~~ 77 (380)
T 2hke_A 9 EAPINIAFIKYWGK-----------REGGETLILPTNDSFSITLSASPFRSKTSVELRDDIETDTLRLNGTEVDVGKTPR 77 (380)
T ss_dssp EECCEEEEECCCCB-----------CTTCTTTTCBSSCEEEEEBCSSSCCEEEEEEEESSCSSCEEEETTEEECGGGCHH
T ss_pred EcCccchhhhhccc-----------ccCcccccCCCCCceEEEecCCCCceEEEEEECCCCCccEEEECCcccCchhHHH
Confidence 47899999999986 78 999999999999999977799999999865444689999997533211
Q ss_pred --hhh----h-ccC---CccEEEEEEcCCCCccccccchhhHHHHHHHHHHHhCCCHHHHHHHHHHccCCchhhhcCCeE
Q psy11141 145 --KSS----R-EMA---DWKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLNTSEVSHIARQGSGSACRSMFGGFV 214 (566)
Q Consensus 145 --~~l----~-~~~---~~~v~I~s~nnIP~aaGLGSSAA~aAAla~Aln~L~gL~~eeLs~iAr~GSGSaarSi~GGfV 214 (566)
+.+ + .+. ..+++|+++|+||+++|||||||++||++.|+|+++|++ +||+++|++|+||+|||+||||+
T Consensus 78 v~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~aaGLGSSAA~aaA~l~Aln~l~gl~-~eL~~lA~~g~Gsva~s~~GG~v 156 (380)
T 2hke_A 78 VQSMLLHLRSTCPEELKNKKVNIVSENNFPTAAGMASSASGYCAMSAALIRAFKST-TNVSMLARLGSGSACRSAFGGFV 156 (380)
T ss_dssp HHHHHHHHHTSSCHHHHTCEEEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHTCS-SCHHHHHHHHCGGGGGGGSSSEE
T ss_pred HHHHHHHHHHHhcccCCCCCEEEEEeccCCCccCcchHHHHHHHHHHHHHHHcCCH-HHHHHHHhhcCcceeeehhCCeE
Confidence 111 1 233 568999999999999999999999999999999999997 99999999999999999999999
Q ss_pred EEEeCCCCCCCCCCCccccccccceeEEEccCCCCCCceEEEEEEECCCCCCCCChHHHhhhccCCchHHHHHhhhccch
Q psy11141 215 RWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRTTLTSTLYEHRVNTIVPSR 294 (566)
Q Consensus 215 ~w~~~~~G~~~dg~~~~~~~~~~~s~a~~I~~~~~wp~L~ivilVv~~~~K~vsST~~mr~~v~ts~~~~~~v~~~~~~~ 294 (566)
+|.. |...++.+ ++.++++.+.+||++++++++++...+.++||++|++++++++.++++++.++..+
T Consensus 157 ~~~~---g~~~~~~~---------~~~~~l~~~~~~p~l~~~vlv~~~~~~~~sst~~~r~~~~~~~~~~~~~~~~~~~~ 224 (380)
T 2hke_A 157 IWNK---GEKPDGSD---------CVATQFVDETHWPEIQVMCAVLKGAQKDVSSTKGMQQSLKTSPLMKKRISETVPER 224 (380)
T ss_dssp EEEC---CSCTTSTT---------CEEEEEECTTSCTTEEEEEEECCCCSCCCCHHHHHHHHHHHCTTHHHHHHTHHHHH
T ss_pred EEec---CCCCCCCc---------ceEEeccCcccCCcceEEEEEecCCCCCCCCHHHHHHHHhcChhHHHHHHHHHHHH
Confidence 9976 53223333 56788865566899998999888778889999999998888999998886445889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCcceEEeecc
Q psy11141 295 CSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLE 374 (566)
Q Consensus 295 v~~li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV~~l~~~ 374 (566)
+..|+.||.++|++.|+++++.|++.||+++++.+|++.|++|.+.++++.+++++...|+..+++|||||||||+||++
T Consensus 225 ~~~l~~Al~~~D~~~lg~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~~~~~Ga~~~a~~SGaGPtv~~l~~~ 304 (380)
T 2hke_A 225 MKIASRAIKARDFATFAEIAMLESDDLQEICATTEPKITYATEDSYAMIRLVKAYNAKKGRTALAYTFDAGANCFLFVLK 304 (380)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECCSSSCEEEEEEG
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhccCCCeeEECHHHHHHHHHHHHHHHhcCCcceEEEECCCCcEEEEECH
Confidence 99999999999999999999999999999999999999999999999999999998654655678999999999999988
Q ss_pred CCHHHHHHHHHhhCCCCCC----CCCccccCcccccCCCCCCCCCCCCCCCCCccEEEEccCCCCcEEcCCCCCCcccC
Q psy11141 375 NTVPLLLSTLVQYFPPSSG----ISAPYIRGLEYLNILPPVQLPSFTPQPAGLLQYLISTKIGSGPKILDDIPNNHLLN 449 (566)
Q Consensus 375 ~~~~~v~~~L~~~f~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~vG~Gp~~~~~~~~~~Lld 449 (566)
++.+++.+.|++.|+...+ ...++++++.... .+......+. ..+++|+++|+|++|+||+++ + ++++|+|
T Consensus 305 ~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~g~g~~~~-~-~~~~~~~ 379 (380)
T 2hke_A 305 EDLPEAVAMLMEHFPTPFEKFFFGDRELLEKVKVVS-LPDEYKKLID-HPKKPFEMLLQSPVGCGVKYL-G-PSESLIP 379 (380)
T ss_dssp GGHHHHHHHHHHHSCCCGGGEEESCHHHHHHHHHCC-CCGGGSSCSC-CCCCCCSEEEEEEBCCCCEEE-C-GGGCSSC
T ss_pred HHHHHHHHHHHHhcccccccccccchhhhccccccC-CChhhhhhhh-ccCCCceEEEEcCCCCCCEec-C-chhhccC
Confidence 7888999999999976421 0223344432100 0111111233 338999999999999999999 4 6788886
No 4
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=100.00 E-value=1.1e-56 Score=467.08 Aligned_cols=291 Identities=33% Similarity=0.489 Sum_probs=255.9
Q ss_pred CCCcceecccccccCCcccccccccccccccccCCCccceeecCCCceeEEEEEecCCCCccEEEEcCccchhhhhhh--
Q psy11141 70 ISAPYIRGLEYLNILPPVQVKLSNNDIITLKSELNGIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKKLAEQEKSS-- 147 (566)
Q Consensus 70 ~~~~~i~~~~~~~~~~~~~~k~~g~~D~~l~lP~ndSLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~~~~~~~~~l-- 147 (566)
.+|+|||+|||||| ||..++||+||||||||+ .+|++|+|+.++++++|++++||+.++.++.++
T Consensus 13 ~ap~nialiky~gk-----------~~~~~~lP~~dslglal~--~~~~~~~v~~~~~~~~~~~~i~g~~~~~~~~n~v~ 79 (332)
T 3qt5_A 13 RAHTNIALIKYWGK-----------ADETYIIPMNNSLSVTLD--RFYTETKVTFDPDFTEDCLILNGNEVNAKEKEKIQ 79 (332)
T ss_dssp EEEEEEEEECCCCE-----------EETTTTEESSCEEEEEEE--EEEEEEEEEEETTCSSCEEEETTEECCHHHHHHHH
T ss_pred EecCcEEEEeeeee-----------ccCCccccCCCceEEEec--CCCCeeEEEEcCCCCccEEEECCccCCcchHHHHH
Confidence 47889999999986 899999999999999999 689999999887766799999998655433221
Q ss_pred --------hccCCccEEEEEEcCCCCccccccchhhHHHHHHHHHHHhCCC--HHHHHHHHHHccCCchhhhcCCeEEEE
Q psy11141 148 --------REMADWKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLN--TSEVSHIARQGSGSACRSMFGGFVRWK 217 (566)
Q Consensus 148 --------~~~~~~~v~I~s~nnIP~aaGLGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~GSGSaarSi~GGfV~w~ 217 (566)
..+...+++|+++|+||+++|||||||++||++.|+|++++++ .+||+++|+++|||+|||+|||+++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~iP~~~GLgSSaa~~~a~~~a~~~l~~~~l~~~el~~la~~~~g~~~~~~~GG~~~~~ 159 (332)
T 3qt5_A 80 NYMNIVRDLAGNRLHARIESENYVPTAAGLASSASAYAALAAACNEALSLNLSDTDLSRLARRGSGSASRSIFGGFAEWE 159 (332)
T ss_dssp HHHHHHHHHHTCCCEEEEEEEEESCGGGTCCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHCGGGGGGGSCSEEEEE
T ss_pred HHHHHHHHhcCCCCCEEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCchhhhcCCeEEEe
Confidence 2455568999999999999999999999999999999999988 999999999999999999999999997
Q ss_pred eCCCCCCCCCCCccccccccceeEEEccCCCCCCceEEEEEEECCCCCCCCChHHHhhhccCCchHHHHHhhhccchHHH
Q psy11141 218 TLPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRTTLTSTLYEHRVNTIVPSRCSG 297 (566)
Q Consensus 218 ~~~~G~~~dg~~~~~~~~~~~s~a~~I~~~~~wp~L~ivilVv~~~~K~vsST~~mr~~v~ts~~~~~~v~~~~~~~v~~ 297 (566)
. |. ++.+ ++++++++...|+++++++++++.+.|+++||++|++.+++++.+++++.+ .+.++..
T Consensus 160 ~---g~--~~~~---------~~~~~l~~~~~~~~l~~vv~vp~~~~~~~ss~~~~~~~~~~s~~~~~~v~~-~~~~~~~ 224 (332)
T 3qt5_A 160 K---GH--DDLT---------SYAHGINSNGWEKDLSMIFVVINNQSKKVSSRSGMSLTRDTSRFYQYWLDH-VDEDLNE 224 (332)
T ss_dssp C---CS--STTT---------CEEEEECCTTGGGGEEEEEECCCCCCCC--CHHHHHHHHHHCTTHHHHHHH-HHHHHHH
T ss_pred c---CC--CCcc---------ceeeecccccCCCCcEEEEEEEcCCCCCCchHHHHHHhhhcChhHHHHHHH-HHHHHHH
Confidence 6 63 3333 567888643457899999999998888999999999988888999999886 6669999
Q ss_pred HHHHHHcCCHHHHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCcceEEeeccCCH
Q psy11141 298 MEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLENTV 377 (566)
Q Consensus 298 li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV~~l~~~~~~ 377 (566)
|+.||.++|++.|+++|++|+++||+++++.+|++.|++|++.++++.++++++. | +.+++||||||||++||++++.
T Consensus 225 l~~Al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~yl~p~~~~i~~~~~~~~~~-G-a~~a~~SGaGPtv~~l~~~~~a 302 (332)
T 3qt5_A 225 AKEAVKNQDFQRLGEVIEANGLRMHATNLGAQPPFTYLVQESYDAMAIVEQCRKA-N-LPCYFTMDAGPNVKVLVEKKNK 302 (332)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHHT-T-CCEEEECCSSSCEEEEEEHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhcccCCCceeeChHHHHHHHHHHHHHhC-C-CcEEEEeCCCCcEEEEECHHHH
Confidence 9999999999999999998999999999999999999999999999999999854 8 6789999999999999998788
Q ss_pred HHHHHHHHhhCCC
Q psy11141 378 PLLLSTLVQYFPP 390 (566)
Q Consensus 378 ~~v~~~L~~~f~~ 390 (566)
+++.++|++.|+.
T Consensus 303 ~~v~~~l~~~~~~ 315 (332)
T 3qt5_A 303 QAVMEQFLKVFDE 315 (332)
T ss_dssp HHHHHHHHTTSCG
T ss_pred HHHHHHHHHhCCC
Confidence 9999999988765
No 5
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=100.00 E-value=6.2e-56 Score=474.41 Aligned_cols=357 Identities=41% Similarity=0.651 Sum_probs=288.5
Q ss_pred CCcceecccccccCCcccccccccccccccccCCCccceeecCCCceeEEEEEecCCCCccEEEEcCccchhh----hhh
Q psy11141 71 SAPYIRGLEYLNILPPVQVKLSNNDIITLKSELNGIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKKLAEQ----EKS 146 (566)
Q Consensus 71 ~~~~i~~~~~~~~~~~~~~k~~g~~D~~l~lP~ndSLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~~~~~~----~~~ 146 (566)
++.||++|||||| +|..+++|.|||||+||+++.+|++|+|+.+++++++++++||+..+.. .+.
T Consensus 30 Ap~nialik~~gk-----------r~~~~~~P~~dslg~aL~~~~l~~~~~v~~~~~~~~~~i~i~G~~~~~~~~~v~~~ 98 (416)
T 1fi4_A 30 APVNIATLKYWGK-----------RDTKLNLPTNSSISVTLSQDDLRTLTSAATAPEFERDTLWLNGEPHSIDNERTQNC 98 (416)
T ss_dssp ECCEEEEECCCCE-----------EETTTTEESSCEEEEEBCTTTSCEEEEEEECTTCCSCBCTTTCCBSSSSSSSHHHH
T ss_pred ecceEEEEecccc-----------cCCceecccccceEEEEEcCCCcceEEEEEcCCCCccEEEECCccccccchHHHHH
Confidence 6779999999986 8899999999999999996669999999986654568899999642211 111
Q ss_pred ---h-h-ccC------------CccEEEEEEcCCCCccccccchhhHHHHHHHHHHHhCCC--HHHHHHHHHHccCCchh
Q psy11141 147 ---S-R-EMA------------DWKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLN--TSEVSHIARQGSGSACR 207 (566)
Q Consensus 147 ---l-~-~~~------------~~~v~I~s~nnIP~aaGLGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~GSGSaar 207 (566)
+ + .+. ..+++|+++|+||+++|||||||++||++.|+|+++|++ .+||+++|++|+||+||
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~gv~I~i~~~IP~~aGLGSSAA~aaA~l~Aln~l~gl~Ls~~eLa~lA~~g~Gs~~~ 178 (416)
T 1fi4_A 99 LRDLRQLRKEMESKDASLPTLSQWKLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEISRIARKGSGSACR 178 (416)
T ss_dssp HHHHHHHHHHHHTTCTTSCCGGGSCEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHhccccccccccccccCCcEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhccCCchhe
Confidence 1 1 122 467999999999999999999999999999999999988 89999999999999999
Q ss_pred hhcCCeEEEEeCCCCCCCCCCCccccccccceeEEEccCCCCCCceEEEEEEECCCCCCCCChHHHhhhccCCchHHHHH
Q psy11141 208 SMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRTTLTSTLYEHRV 287 (566)
Q Consensus 208 Si~GGfV~w~~~~~G~~~dg~~~~~~~~~~~s~a~~I~~~~~wp~L~ivilVv~~~~K~vsST~~mr~~v~ts~~~~~~v 287 (566)
|+||||++|.. |...|+.+ ++.++++...+||++++++++++...+.++||++|++.+++++.+++++
T Consensus 179 sl~GG~v~~~~---G~~~~~~~---------~~~~~l~~~~~~p~l~~vvlv~~~~~~~~sst~~~~~~~~~~~~~~~~~ 246 (416)
T 1fi4_A 179 SLFGGYVAWEM---GKAEDGHD---------SMAVQIADSSDWPQMKACVLVVSDIKKDVSSTQGMQLTVATSELFKERI 246 (416)
T ss_dssp GGSSSEEEEEC---CSCTTCTT---------CEEEEEECGGGSTTEEEEEEEECCCSCCCCHHHHHHHHHHHCSHHHHHH
T ss_pred EeeCCcEEEec---CCcCCCCC---------ceeEEecCccCCcccEEEEEEECCCCCCcCCHHHHHHHhhcCHhHHHHH
Confidence 99999999976 53223333 4677776445689999889999887888999999999888888888888
Q ss_pred hhhccchHHHHHHHHHcCCHHHHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCcc
Q psy11141 288 NTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPN 367 (566)
Q Consensus 288 ~~~~~~~v~~li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPn 367 (566)
++++..++..|+.||.++|++.|+++++.|++.||+++++++|++.|++|.+.++++.+++++...|++.+++|||||||
T Consensus 247 ~~i~~~~~~~l~~AL~~gD~~~~g~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~r~~~Ga~~~a~~SGaGPt 326 (416)
T 1fi4_A 247 EHVVPKRFEVMRKAIVEKDFATFAKETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQFYGETIVAYTFDAGPN 326 (416)
T ss_dssp HTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEEECSSSC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCceeeecHHHHHHHHHHHHHHHhcCCceEEEEecCCCc
Confidence 75457899999999999999999999999999999999999999999999999999999999862364568899999999
Q ss_pred eEEeeccCCHHHHHHHHHhhCCCCCCCCCcc----ccCcccccCCCCCCCCCCCCCC-CCCccEEEEccCCCCcEEcCCC
Q psy11141 368 ACLYVLENTVPLLLSTLVQYFPPSSGISAPY----IRGLEYLNILPPVQLPSFTPQP-AGLLQYLISTKIGSGPKILDDI 442 (566)
Q Consensus 368 V~~l~~~~~~~~v~~~L~~~f~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ii~t~vG~Gp~~~~~~ 442 (566)
||+||++++.+++.+.|++.|+....+...| +++.+.. .+.......+..++ +++|+|+|+|+||+||+++.
T Consensus 327 v~al~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~g~gp~~~~-- 403 (416)
T 1fi4_A 327 AVLYYLAENESKLFAFIYKLFGSVPGWDKKFTTEQLEAFNHQ-FESSNFTARELDLELQKDVARVILTQVGSGPQETN-- 403 (416)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHTTSTTSTTTCCHHHHHHHHHH-HHTSCCCSSCCCSSGGGGEEEEEEEEBCCCCEECS--
T ss_pred EEEEECHHHHHHHHHHHHHhcccccccccccccccccccccc-CCChhhhhhccccccCCCceEEEECCCCCChhhhH--
Confidence 9999988788889999999887322122222 4432100 00111111334444 78999999999999999983
Q ss_pred CCCcccCCCCCch
Q psy11141 443 PNNHLLNEAGAPK 455 (566)
Q Consensus 443 ~~~~Lld~~Glp~ 455 (566)
++|++++|+|+
T Consensus 404 --~~~~~~~~~~~ 414 (416)
T 1fi4_A 404 --ESLIDAKTGLP 414 (416)
T ss_dssp --CCSSCSSSCC-
T ss_pred --HhccCCCCCCC
Confidence 69999999996
No 6
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Probab=100.00 E-value=3.2e-44 Score=368.24 Aligned_cols=278 Identities=27% Similarity=0.367 Sum_probs=233.9
Q ss_pred CCcceecccccccCCcccccccccccccccccCCCccceeecCCCceeEEEEEe-cCCCCccEEEEcCccchhhhhh---
Q psy11141 71 SAPYIRGLEYLNILPPVQVKLSNNDIITLKSELNGIEPIEITFQRMHAKTSVAL-SPDFTEDKLWLNGKKLAEQEKS--- 146 (566)
Q Consensus 71 ~~~~i~~~~~~~~~~~~~~k~~g~~D~~l~lP~ndSLSltLd~~~lyt~TtV~~-s~~~~~d~i~lnG~~~~~~~~~--- 146 (566)
++.||++|||||| ||..+++|.+||||++|+ .+|++++|+. +++++.+++.++|+..+.+..+
T Consensus 13 ap~~i~l~~~~g~-----------~~~g~~lp~~dslg~al~--~l~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~n~v~ 79 (317)
T 2gs8_A 13 SYANIAIIKYWGK-----------ENQAKMIPSTSSISLTLE--NMFTTTSVSFLPDTATSDQFYINGILQNDEEHTKIS 79 (317)
T ss_dssp EEEEEEEECCCCE-----------EETTTTEESSCEEEEEEE--EEEEEEEEEECCTTCCSCEEEETTEECCHHHHHHHH
T ss_pred ecCcEEEEeeeee-----------ccCCcccCCCCceEEEee--cccceEEEEEEcCCCCeEEEEECCCccccchHHHHH
Confidence 6679999999986 778899999999999997 5999999997 5533357899999653322211
Q ss_pred --h----hccCCccEEEEEEcCCCCccccccchhhHHHHHHHHHHHhCCC--HHHHHHHHHHccCCchhhhcCCeEEEEe
Q psy11141 147 --S----REMADWKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLN--TSEVSHIARQGSGSACRSMFGGFVRWKT 218 (566)
Q Consensus 147 --l----~~~~~~~v~I~s~nnIP~aaGLGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~GSGSaarSi~GGfV~w~~ 218 (566)
. +... .+++|+++|+||+++|||||||++||++.|+|+++|++ .+||.++|++++|++|+|++||+++|..
T Consensus 80 ~~~~~~~~~~~-~g~~I~i~~~IP~~~GLGSSaA~~vA~~~al~~l~g~~ls~~el~~la~~~~G~~~~~~~GG~~~~~~ 158 (317)
T 2gs8_A 80 AIIDQFRQPGQ-AFVKMETQNNMPTAAGLSSSSSGLSALVKACDQLFDTQLDQKALAQKAKFASGSSSRSFFGPVAAWDK 158 (317)
T ss_dssp HHHTTTCCTTC-CCEEEEEECCSCGGGCCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGGGGSCSEEEECT
T ss_pred HHHHHHHHhcC-CCeEEEEeCCCCCCCchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcchhHhhhcCChheEee
Confidence 1 1111 67999999999999999999999999999999999988 9999999999999999999999998853
Q ss_pred CCCCCCCCCCCccccccccceeEEEccCCCCCCceEEEEEEECCCCCCCCChHHHhhhccCCchHHHHHhhhccchHHHH
Q psy11141 219 LPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRTTLTSTLYEHRVNTIVPSRCSGM 298 (566)
Q Consensus 219 ~~~G~~~dg~~~~~~~~~~~s~a~~I~~~~~wp~L~ivilVv~~~~K~vsST~~mr~~v~ts~~~~~~v~~~~~~~v~~l 298 (566)
++.+ +..++++ +++++++++++...+.+++|+.+++.+++++.+++++.. +..++..+
T Consensus 159 -------~~~~---------~~~~~~~-----~~~~~~v~i~~~~~~~~~tt~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 216 (317)
T 2gs8_A 159 -------DSGA---------IYKVETD-----LKMAMIMLVLNAAKKPISSREGMKLCRDTSTTFDQWVEQ-SAIDYQHM 216 (317)
T ss_dssp -------TTCC---------EEECCCC-----CCEEEEEEECCCSSCCSCHHHHHHHHHHHCTTHHHHHHH-HHHHHHHH
T ss_pred -------CCCc---------eeEEEcc-----ccccEEEEEEECCCcCcccHHHHHHHhhcCHHHHHHHHH-HHHHHHHH
Confidence 2332 3444552 267777787777677788999999877777777776655 67899999
Q ss_pred HHHHHcCCHHHHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCcceEEeeccCCHH
Q psy11141 299 EEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLENTVP 378 (566)
Q Consensus 299 i~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV~~l~~~~~~~ 378 (566)
+.||.++|++.|+++|+.|++.||++++.++|++.++.|.+.++++.+++++.. | ..+++||||||||++|+++++.+
T Consensus 217 ~~al~~~d~~~lg~~~~~~~~~l~~~~~~~~p~~~~l~~~~~~i~~~~~~~~~~-G-~~~~~~SGaGptv~~l~~~~~~~ 294 (317)
T 2gs8_A 217 LTYLKTNNFEKVGQLTEANALAMHATTKTANPPFSYLTKESYQAMEAVKELRQE-G-FACYFTMDAGPNVKVLCLEKDLA 294 (317)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHTTSSSCCCSCCHHHHHHHHHHHHHHHT-T-CCEEEECCSSSCEEEEEEGGGHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCCceeEhHHHHHHHHHHHHHHhc-C-CcEEEEecCCCeEEEEEcHHHHH
Confidence 999999999999999998899999999999999999999999999999999865 8 67899999999999999887778
Q ss_pred HHHHHHHh
Q psy11141 379 LLLSTLVQ 386 (566)
Q Consensus 379 ~v~~~L~~ 386 (566)
++.+.+++
T Consensus 295 ~v~~~l~~ 302 (317)
T 2gs8_A 295 QLAERLGK 302 (317)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 88888877
No 7
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=99.96 E-value=1e-27 Score=245.57 Aligned_cols=243 Identities=16% Similarity=0.152 Sum_probs=169.6
Q ss_pred ccCCCccceeecCCCceeEEEEEecCCCCccEEEEcCc---cchhhhhhh------h-ccCCccEEEEEEcCCCCccccc
Q psy11141 101 SELNGIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGK---KLAEQEKSS------R-EMADWKMHICSENNFPTAAGLA 170 (566)
Q Consensus 101 lP~ndSLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~---~~~~~~~~l------~-~~~~~~v~I~s~nnIP~aaGLG 170 (566)
=|+|||||++|+ +|++.+|+... +.+.+.+. .++.+++++ . .....+++|+++++||.++|||
T Consensus 15 G~Gfd~lg~al~---l~d~v~~~~~~----~~~~i~~~~~~~~p~~~~nlv~~a~~~~~~~~~g~~i~i~~~iP~~~GLG 87 (298)
T 3hul_A 15 GPGFDSCGLALT---LYLTLDIGAEA----DSWYIEHNIGGGIPHDETNVIIETALNLAPNLTPHHLVMTCDIPPARGLG 87 (298)
T ss_dssp TTCTTTEEEEEE---EEEEEEEEEEC----SSCEEECCCCTTCCSSTTSHHHHHHHHHCTTCCCEEEEEEECSCTTSSSS
T ss_pred CCCcchhhhhcc---cceEEEEEEcC----CceEEEecCcccCCCCCCcHHHHHHHHHhccCCceEEEEecCCCCCCCcc
Confidence 399999999999 89999987422 33555543 233332221 1 1234689999999999999999
Q ss_pred cchhhHHHHHHHHHHHhCCC--HHHHHHHHHHccC---CchhhhcCCeEEEEeCCCCCCCCCCCccccccccceeEEEcc
Q psy11141 171 SSAAGYSCLVFTLAYALGLN--TSEVSHIARQGSG---SACRSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQII 245 (566)
Q Consensus 171 SSAA~aAAla~Aln~L~gL~--~eeLs~iAr~GSG---SaarSi~GGfV~w~~~~~G~~~dg~~~~~~~~~~~s~a~~I~ 245 (566)
||||.+||++.|+|++++++ .+||.++|..++| ++++|+|||+++ .. |. |+. ....+++
T Consensus 88 sssa~~~a~~~al~~~~~~~l~~~el~~la~~~eg~~ddv~~~~~GG~~~-~~---g~---ge~---------~~~~~~~ 151 (298)
T 3hul_A 88 SSSAAVVAGIELANTLAELNLSKEEKVRIAAEIEGHPDNVAPAVLGNWVV-GA---KL---DGE---------DFYVRHL 151 (298)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHSCSTTHHHHHHCSEEE-EE---EE---TTE---------EEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCcccCcccccCCEEE-EE---eC---CCc---------EEEEEcC
Confidence 99999999999999999988 9999999998888 789999999986 34 42 332 3345664
Q ss_pred CCCCCCceEEEEEEECCCCCCCCChHHHhhhccCCchHHHHHhhhccchHHHHHHHHHcCCHHHHHHHHHhchhhhhhcc
Q psy11141 246 SESYWGSMRVIILVVNDQAKSTSSTDGMQRTTLTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACC 325 (566)
Q Consensus 246 ~~~~wp~L~ivilVv~~~~K~vsST~~mr~~v~ts~~~~~~v~~~~~~~v~~li~AL~~~D~e~lgel~~~Dsn~LHa~~ 325 (566)
+|++++++++++.+ + +|...++.++....+.+.+.+ ..++..++.||.++|++.+++.|.+| .+|+.+
T Consensus 152 ----~p~~~~vlv~p~~~---~-sT~~a~~~l~~~~~~~~~~~~--~~~~~~~~~al~~~d~~~l~~~l~nd--~~~e~~ 219 (298)
T 3hul_A 152 ----FPDCALIAFIPKAE---L-LTSESRGVLPDTLPFKEAVQA--SSIANVMIAAILRNDMTLAGEMMERD--LWHEKY 219 (298)
T ss_dssp ----CC-CEEEEEECCCC---C-C--------CCEEEHHHHHHH--HHHHHHHHHHHTTTCHHHHHHHHTCC--CC----
T ss_pred ----CCCeEEEEEECCCC---C-CcHHHHHHHhhhccHHHHHHH--HHHHHHHHHHHHcCCHHHHHHHHhhh--HHHHHH
Confidence 46777777776543 3 455555555554445555554 35688999999999999999998654 578876
Q ss_pred cccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCcceEEeeccCCHHHHHHHHHhhCC
Q psy11141 326 LDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLENTVPLLLSTLVQYFP 389 (566)
Q Consensus 326 ~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV~~l~~~~~~~~v~~~L~~~f~ 389 (566)
+. .+.|+..++++.+++ . | ..++.+|||||+||++|++++.+++.++|++.+.
T Consensus 220 ~~------~~~p~l~~l~~~~~~---~-G-a~ga~~SGsGptv~al~~~~~a~~v~~~l~~~~~ 272 (298)
T 3hul_A 220 RS------QLVPHLAQIRDVAKN---Q-G-AYAACLSGAGPTVLVFAPRNLANKLQTSLQTLEI 272 (298)
T ss_dssp -C------TTGGGHHHHHHHHHT---T-T-CCEEEECTTSSCEEEEECGGGHHHHHHHHHTTCC
T ss_pred HH------hhCchHHHHHHHHHH---C-C-CEEEEEeccchheEEEECHHHHHHHHHHHHhcCC
Confidence 63 245666666654443 3 6 4678999999999999997778888888887643
No 8
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=99.95 E-value=5.5e-27 Score=236.68 Aligned_cols=245 Identities=17% Similarity=0.150 Sum_probs=176.5
Q ss_pred cCCCccceeecCCCceeEEEEEecCCCCccEEEEcCccchhh-hhh---------hh-ccCCccEEEEEEcCCCCccccc
Q psy11141 102 ELNGIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKKLAEQ-EKS---------SR-EMADWKMHICSENNFPTAAGLA 170 (566)
Q Consensus 102 P~ndSLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~~~~~~-~~~---------l~-~~~~~~v~I~s~nnIP~aaGLG 170 (566)
|++|++|+++| .++++++++..++ .+.++..+|..++.+ ..+ .+ .+...+++|+++++||.++|||
T Consensus 16 ~g~~vl~~a~d--~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~n~v~~a~~~~~~~~g~~~g~~i~i~~~iP~g~GLG 92 (296)
T 1h72_C 16 VGFDVFGLCLK--EPYDVIEVEAIDD-KEIIIEVDDKNIPTDPDKNVAGIVAKKMIDDFNIGKGVKITIKKGVKAGSGLG 92 (296)
T ss_dssp GGTTTEEEEEE--EEEEEEEEEEESS-SSEEEEESCTTSCCCTTTSHHHHHHHHHHHHTTCCCEEEEEEECSSCTTSSSC
T ss_pred cchhhhHHhcc--cccEEEEEEecCC-CeEEEEEcCCcCCCCCccCcHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCCcc
Confidence 79999999999 4677777765442 122333466433222 111 11 3445689999999999999999
Q ss_pred cchhhHHHHHHHHHHHhCCC--HHHHHHHHHHccC---------CchhhhcCCeEEEEeCCCCCCCCCCCccccccccce
Q psy11141 171 SSAAGYSCLVFTLAYALGLN--TSEVSHIARQGSG---------SACRSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELS 239 (566)
Q Consensus 171 SSAA~aAAla~Aln~L~gL~--~eeLs~iAr~GSG---------SaarSi~GGfV~w~~~~~G~~~dg~~~~~~~~~~~s 239 (566)
||||.+||++.|+|++++++ .++|.++|+++++ ++++|+|||++.+.. + +. .
T Consensus 93 SSsa~~~a~~~al~~l~~~~l~~~~l~~la~~~e~~~~g~~~~ddv~~~~~gg~~~~~~---~----~~----------~ 155 (296)
T 1h72_C 93 SSAASSAGTAYAINELFKLNLDKLKLVDYASYGELASSGAKHADNVAPAIFGGFTMVTN---Y----EP----------L 155 (296)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHSSCCCTTHHHHHHCSEEEEEE---T----TT----------T
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcCcccCCCCccchHHHHhCCEEEEEe---C----Cc----------e
Confidence 99999999999999999988 8999999987765 789999999998754 2 21 2
Q ss_pred eEEEccCCCCCCceEEEEEEECCCCCCCCChHHHhhhccCCchHHHHHhhhccchHHHHHHHHHcCCHHHHHHHHHhchh
Q psy11141 240 NAEQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRTTLTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSN 319 (566)
Q Consensus 240 ~a~~I~~~~~wp~L~ivilVv~~~~K~vsST~~mr~~v~ts~~~~~~v~~~~~~~v~~li~AL~~~D~e~lgel~~~Dsn 319 (566)
...+++.+ ++++++++.++. .+ +|..+++.+++...+.+++.+ ..++..++.||.++|++.|+++|+. |
T Consensus 156 ~~~~~~~~---~~~~~vl~~p~~---~~-~T~~~~~~l~~~~~~~~~~~~--~~~~~~~~~al~~~d~~~~~~~~~~--n 224 (296)
T 1h72_C 156 EVLHIPID---FKLDILIAIPNI---SI-NTKEAREILPKAVGLKDLVNN--VGKACGMVYALYNKDKSLFGRYMMS--D 224 (296)
T ss_dssp EEEEECCC---SCCCEEEECCSS---CC-CHHHHHHTSCSCCCHHHHHHH--HHHHHHHHHHHHTTCHHHHHHHHTT--C
T ss_pred EEEEEcCC---CCeEEEEEeCCC---Cc-cHHHHHHhccCcCcHHHHHHH--HHHHHHHHHHHHcCCHHHHHHHHhc--C
Confidence 35566421 356656554432 23 566666555554445566654 3567889999999999999999844 3
Q ss_pred hhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCcceEEeeccCCHHHHHHHHHhhCC
Q psy11141 320 QFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLENTVPLLLSTLVQYFP 389 (566)
Q Consensus 320 ~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV~~l~~~~~~~~v~~~L~~~f~ 389 (566)
.+|+.++. .+.|+..++++.+++. . .++.+|||||++|+++++++.+++.+.|++.+.
T Consensus 225 ~~h~~~~~------~~~p~l~~~~~~~~~~--a----~ga~~sGsG~~v~~l~~~~~~~~~~~~l~~~~~ 282 (296)
T 1h72_C 225 KVIEPVRG------KLIPNYFKIKEEVKDK--V----YGITISGSGPSIIAFPKEEFIDEVENILRDYYE 282 (296)
T ss_dssp CSSHHHHH------TTSTTHHHHHHHHTTT--E----EEEEECTTSSCEEEEECGGGHHHHHHHHHHHCS
T ss_pred cchhhhhh------ccCccHHHHHHHHHhh--c----ceEEEecCChheEEEecHHHHHHHHHHHHHhcc
Confidence 67887663 4567777877766554 2 358899999999999966678889999988764
No 9
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=99.91 E-value=3.7e-23 Score=212.60 Aligned_cols=236 Identities=15% Similarity=0.140 Sum_probs=167.3
Q ss_pred CCCccc---eeecCCCceeEEEEEecCCCCccEEEEcCc---cchhhhhhh----------hccCCccEEEEEEcCCCCc
Q psy11141 103 LNGIEP---IEITFQRMHAKTSVALSPDFTEDKLWLNGK---KLAEQEKSS----------REMADWKMHICSENNFPTA 166 (566)
Q Consensus 103 ~ndSLS---ltLd~~~lyt~TtV~~s~~~~~d~i~lnG~---~~~~~~~~l----------~~~~~~~v~I~s~nnIP~a 166 (566)
+++.|. ++++ +|++.+|+..+ +.++.+.|. .++.+++++ ..+...+++|+++++||.+
T Consensus 27 Gyh~l~s~~~al~---l~D~l~~~~~~---~~~i~~~g~~~~~~p~~~~Nlv~~A~~~l~~~~g~~~~~~i~i~~~iP~~ 100 (306)
T 3pyf_A 27 GYHELTTVFHAVS---LVDEVTVRNAD---VLSLELVGEGADQLPTDERNLAWQAAELMAEHVGRAPDVSIMIDKSIPVA 100 (306)
T ss_dssp SCCCEEEEEEEEE---EEEEEEEEECS---SCEEEEESTTGGGSCCSTTSHHHHHHHHHHHHTTCCCCEEEEEEECSCTT
T ss_pred CCcchheeEEEcc---cCCEEEEEECC---CCEEEEeCCCccCCCCCCccHHHHHHHHHHHHhCCCCCeEEEEecCCCCC
Confidence 677777 8998 99999998654 357888875 244333221 2455568999999999999
Q ss_pred cccccchhhHHHHHHHHHHHhCCC--HHHHHHHHHHccCCchhhhcCCeEEEEeCCCCCCCCCCCccccccccceeEEEc
Q psy11141 167 AGLASSAAGYSCLVFTLAYALGLN--TSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQI 244 (566)
Q Consensus 167 aGLGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~GSGSaarSi~GGfV~w~~~~~G~~~dg~~~~~~~~~~~s~a~~I 244 (566)
+|||||||.+||++.|+|++++++ .+||.++|...++++++|++||+++ .. |. |+. ..++
T Consensus 101 ~GLGsssa~a~a~l~al~~~~~~~l~~~~l~~la~~~~~Dv~~~~~Gg~~~-~~---g~---ge~-----------~~~l 162 (306)
T 3pyf_A 101 GGMAGGSADAAAVLVAMNSLWELNVPRRDLRMLAARLGSDVPFALHGGTAL-GT---GR---GEE-----------LATV 162 (306)
T ss_dssp SSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTHHHHHHBSEEE-EC---SS---SSC-----------CEEE
T ss_pred CCcchHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCceeecCceEE-EE---ee---CCe-----------EEEc
Confidence 999999999999999999999988 9999999998888999999999974 44 53 332 3455
Q ss_pred cCCCCCCceEEEEEEECCCCCCCCChHHHhhhccCCchHHHHHhhhccchHHHHHHHHHcCCHHHHHHHHHhchhhhhhc
Q psy11141 245 ISESYWGSMRVIILVVNDQAKSTSSTDGMQRTTLTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHAC 324 (566)
Q Consensus 245 ~~~~~wp~L~ivilVv~~~~K~vsST~~mr~~v~ts~~~~~~v~~~~~~~v~~li~AL~~~D~e~lgel~~~Dsn~LHa~ 324 (566)
+.+ +++++++++++.+ + ||..+.+.++....... +. ...++..++.+|.++|++.+++.+.+ .++..
T Consensus 163 ~~~---~~~~~vl~~P~~~---v-sT~~a~~~l~~~~~~~~-~~--~~~~~~~~~~al~~~d~~~l~~~l~n---~le~~ 229 (306)
T 3pyf_A 163 LSR---NTFHWVLAFADSG---L-LTSAVYNELDRLREVGD-PP--RLGEPGPVLAALAAGDPDQLAPLLGN---EMQAA 229 (306)
T ss_dssp CCS---SCEEEEEEECSSC---C-CHHHHHHHHHHHHHHSC-CC--CCCCHHHHHHHHHHTCHHHHGGGCEE---TTHHH
T ss_pred cCC---CCcEEEEEECCCC---C-cHHHHHHhhhhhccccc-cc--cccCHHHHHHHHHhCCHHHHHHHhcc---chHHH
Confidence 421 4677777666543 3 56555443321110000 11 23478899999999999999987643 35443
Q ss_pred ccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCcceEEeeccC-CHHHHHHHHHhh
Q psy11141 325 CLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLEN-TVPLLLSTLVQY 387 (566)
Q Consensus 325 ~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV~~l~~~~-~~~~v~~~L~~~ 387 (566)
.. .+.|+..++++.+.+. | ..++.+|||||+||+++..+ ..+++.+.|++.
T Consensus 230 ~~-------~~~P~l~~i~~~~~~~----G-a~ga~mSGsGptvfal~~~~~~a~~~~~~l~~~ 281 (306)
T 3pyf_A 230 AV-------SLDPALARALRAGVEA----G-ALAGIVSGSGPTCAFLCTSASSAIDVGAQLSGA 281 (306)
T ss_dssp HH-------HHCTHHHHHHHHHHHT----T-CSEEEECTTSSEEEEEESSHHHHHHHHHHHHHT
T ss_pred HH-------HhChHHHHHHHHHHhc----C-CCEEEEcCcchhheEEeCCHHHHHHHHHHHHhc
Confidence 33 3356666666555442 6 45789999999999999754 367788887765
No 10
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=99.89 E-value=1.5e-21 Score=200.26 Aligned_cols=249 Identities=16% Similarity=0.159 Sum_probs=166.0
Q ss_pred ccCCCccceeecCCCceeEEEEEecCCCCccEEE-EcCcc-chh---hhh---------hh-hccCC---ccEEEEEEcC
Q psy11141 101 SELNGIEPIEITFQRMHAKTSVALSPDFTEDKLW-LNGKK-LAE---QEK---------SS-REMAD---WKMHICSENN 162 (566)
Q Consensus 101 lP~ndSLSltLd~~~lyt~TtV~~s~~~~~d~i~-lnG~~-~~~---~~~---------~l-~~~~~---~~v~I~s~nn 162 (566)
..+..+|+++++ +|++++|+..++ ++.+. .++.. ++. ... .+ ..+.. .+++|+++++
T Consensus 31 ~~G~~~l~~ai~---~~~~v~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~g~~~~~~g~~i~i~~~ 105 (332)
T 2hfs_A 31 VHGAEAIVAGIS---EYTECRLEINPG--VPGLQVDDQRPAIPGYIAQKRDEQIKAHQLVLDHLKVDLSGDGLKMFIGGP 105 (332)
T ss_dssp GGTCCEEEEEEE---EEEEEEEEEETT--CCSEEEEECCCCCTTHHHHHHHHHHHHHHHHHHHTTBCCSSSEEEEEEECS
T ss_pred EcCCeEEEEEec---ccEEEEEEEcCC--CCCeEEEecCccccccccccchhHHHHHHHHHHHcCCccCCCceEEEEEcC
Confidence 467889999999 899999886531 12232 23321 221 111 11 12322 5799999999
Q ss_pred CCCccccccchhhHHHHHHHHHHHhCCC--HHHHHHHHHHccC---------CchhhhcCCeEEEEeCCCCCCCCCCCcc
Q psy11141 163 FPTAAGLASSAAGYSCLVFTLAYALGLN--TSEVSHIARQGSG---------SACRSMFGGFVRWKTLPEGQQSDGNGDI 231 (566)
Q Consensus 163 IP~aaGLGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~GSG---------SaarSi~GGfV~w~~~~~G~~~dg~~~~ 231 (566)
||.++|||||||.+||++.|+|++++++ .++|.++|+++++ ++++|+|||++.+.. |. ++
T Consensus 106 iP~g~GLGSSsA~~~a~~~al~~l~~~~l~~~~l~~~a~~~E~~~~G~~~G~D~~~~~~Gg~~~~~~---~~---g~--- 176 (332)
T 2hfs_A 106 LVPSSGIGASASDVVAFSRALSELYQLNLTDEEVNLSAFVGEGGYHGTPSGADNTAATYGGLILYRR---QN---GK--- 176 (332)
T ss_dssp CCCCTTSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHGGGSSSCCCSHHHHHHHHCEEEEEEE---CS---SS---
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcHhHHHHhcCCeEEEec---CC---CC---
Confidence 9999999999999999999999999987 8999999976542 678999999988766 52 32
Q ss_pred ccccccceeEEEccCCCCCCceEEEEEEECCCCCCCCChHHHhhhcc----CCchHHHHHhhhccchHHHHHHHHHcCCH
Q psy11141 232 GRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRTTL----TSTLYEHRVNTIVPSRCSGMEEALRARDF 307 (566)
Q Consensus 232 ~~~~~~~s~a~~I~~~~~wp~L~ivilVv~~~~K~vsST~~mr~~v~----ts~~~~~~v~~~~~~~v~~li~AL~~~D~ 307 (566)
...++++. .++++++++.+.. +++|.+.+++... +...++.+.+. ....+..++.+|+++|+
T Consensus 177 -------~~~~~~~~---~~~~~~vl~~~~~---~~~T~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~d~ 242 (332)
T 2hfs_A 177 -------SVFKPIAF---QQRLYLVVVGTGI---NASTAKVVNDVHKMKQQQPVQFKRLYDN-YTHIVSQAREALQKGDL 242 (332)
T ss_dssp -------EEEEEECC---CSCEEEEEEECSC---CCCHHHHHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHHHHHTCH
T ss_pred -------cceeeecC---CCCcEEEEEECCC---CccHHHHHHHHHHHHHhCHHHHHHHHHH-HHHHHHHHHHHHHcCCH
Confidence 24566643 2567766555433 3444455543211 11112223333 34567889999999999
Q ss_pred HHHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCc--ceEEeeccCC-HHHHHHHH
Q psy11141 308 PRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGP--NACLYVLENT-VPLLLSTL 384 (566)
Q Consensus 308 e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGP--nV~~l~~~~~-~~~v~~~L 384 (566)
+.|+++|..+.+.++. +. ...|+..++++.+ ++. | ..++.+||||| +|+++++.++ .+++.+.|
T Consensus 243 ~~l~~~~~~~~~~l~~-~~-------~~~p~l~~l~~~~---~~~-G-a~ga~~sGaG~gg~v~~l~~~~~~a~~~~~~l 309 (332)
T 2hfs_A 243 QRLGQLMNANHDLCRQ-ID-------VSCRELESIVQTC---RTY-G-ALGAKLSGTGRGGIAVALAASSDQRDAIVKGL 309 (332)
T ss_dssp HHHHHHHHHHHHHHHH-TT-------CCCHHHHHHHHHH---HHT-T-CSEEEEESSCSSSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-cC-------CCCHHHHHHHHHH---HHc-C-CceEEeccCCCCcEEEEEecCcccHHHHHHHH
Confidence 9999998654444433 32 1245555555444 433 6 45789999999 8999997653 57888899
Q ss_pred HhhCCC
Q psy11141 385 VQYFPP 390 (566)
Q Consensus 385 ~~~f~~ 390 (566)
++.|..
T Consensus 310 ~~~~~~ 315 (332)
T 2hfs_A 310 KAKCPE 315 (332)
T ss_dssp HHHCTT
T ss_pred HHHHhc
Confidence 887754
No 11
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=99.88 E-value=2.2e-21 Score=194.84 Aligned_cols=243 Identities=9% Similarity=-0.011 Sum_probs=158.9
Q ss_pred ccCCCccceeecCCCceeEEEEEecCCCCccEEEEcCccchh-hhhhh-h-ccC-CccEEEEEEcCCCCccccccchhhH
Q psy11141 101 SELNGIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKKLAE-QEKSS-R-EMA-DWKMHICSENNFPTAAGLASSAAGY 176 (566)
Q Consensus 101 lP~ndSLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~~~~~-~~~~l-~-~~~-~~~v~I~s~nnIP~aaGLGSSAA~a 176 (566)
.++.++|+++++ .+|++++|+..+ +.+.+++..... ..+.. . .+. ..+++|+++++||.++|||||||.+
T Consensus 23 ~~g~~~l~~ai~--~~~~~v~v~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~i~i~~~iP~g~GLGSSsa~~ 96 (292)
T 2oi2_A 23 VYGYPAISLPLL--EVEVTCKVVPAE----SPWRLYEEDTLSMAVYASLEYLNITEACIRCEIDSAIPEKRGMGSSAAIS 96 (292)
T ss_dssp GGTCCEEEEEEE--EEEEEEEEEECS----SCCCCCCCSHHHHHHHHHHHHHTCSCCCEEEEEC----CCGGGSCHHHHH
T ss_pred ecCCcEEEEEEc--CcEEEEEEEECC----CceEEEecCccchhhhhhHHHhcccCCceEEEEEecCCCCCCchHHHHHH
Confidence 378999999993 299999998643 235555532110 00111 1 133 4579999999999999999999999
Q ss_pred HHHHHHHHHHhCCC--HHHHHHHHHHc----cCCc-----hhhhcCCeEEEEeCCCCCCCCCCCccccccccceeEEEcc
Q psy11141 177 SCLVFTLAYALGLN--TSEVSHIARQG----SGSA-----CRSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQII 245 (566)
Q Consensus 177 AAla~Aln~L~gL~--~eeLs~iAr~G----SGSa-----arSi~GGfV~w~~~~~G~~~dg~~~~~~~~~~~s~a~~I~ 245 (566)
||++.|+|++++++ .++|.++|+.+ +|+. +.+++||++.+.. + + ..++++
T Consensus 97 ~a~~~al~~~~~~~l~~~~l~~la~~~E~~~~~~p~g~d~~~~~~gg~~~~~~---~-----~-----------~~~~~~ 157 (292)
T 2oi2_A 97 IAAIRAVFDYYQADLPHDVLEILVNRAEMIAHMNPSGLDAKTCLSDQPIRFIK---N-----V-----------GFTELE 157 (292)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTTCCCCSHHHHHHTCSSCEEEET---T-----T-----------EEEECC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCchhHHHHhcCceEEEEc---C-----C-----------Cceeec
Confidence 99999999999988 89999999764 4443 3478999987754 3 1 245654
Q ss_pred CCCCCCceEEEEEEECCCCCCCCChHHHhhhccCCc-hHHHHHhhhccchHHHHHHHHHcCCHHHHHHHHHhchhhhhhc
Q psy11141 246 SESYWGSMRVIILVVNDQAKSTSSTDGMQRTTLTST-LYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHAC 324 (566)
Q Consensus 246 ~~~~wp~L~ivilVv~~~~K~vsST~~mr~~v~ts~-~~~~~v~~~~~~~v~~li~AL~~~D~e~lgel~~~Dsn~LHa~ 324 (566)
. .++.+ +++++. ..++ +|..+++.++... ..+..+.. ....+..++.+|.++|++.|+++|..+.+.+++.
T Consensus 158 ~--~~~~~---~~i~~~-~~~~-sT~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~al~~~d~~~l~~~~~~~~~~l~~~ 229 (292)
T 2oi2_A 158 M--DLSAY---LVIADT-GVYG-HTREAIQVVQNKGKDALPFLHA-LGELTQQAEIAISQKDAEGLGQILSQAHLHLKEI 229 (292)
T ss_dssp C--CCSCE---EEEEEC-SSCC-CHHHHHHHHHHTGGGGHHHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred C--CCCCE---EEEEEC-CCCC-cHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Confidence 2 13432 444443 3334 5555544433322 21334443 3335678899999999999999987666667653
Q ss_pred ccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCc--ceEEeecc-CCHHHHHHHHHhhCC
Q psy11141 325 CLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGP--NACLYVLE-NTVPLLLSTLVQYFP 389 (566)
Q Consensus 325 ~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGP--nV~~l~~~-~~~~~v~~~L~~~f~ 389 (566)
. ...|+..++++.+ ++. | ..++.+||||| +|++++++ ++.+++.+.|++.+.
T Consensus 230 -~-------~~~p~l~~l~~~~---~~~-G-a~ga~~sGaG~Gg~v~~l~~~~~~~~~~~~~l~~~~~ 284 (292)
T 2oi2_A 230 -G-------VSSLEADSLVETA---LSH-G-ALGAKMSGGGLGGCIIALVTNLTHAQELAERLEEKGA 284 (292)
T ss_dssp -T-------CCCHHHHHHHHHH---HTT-T-CSEEEEESSSSSSEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred -C-------CCcHHHHHHHHHH---HhC-C-CceeeeccCCCCcEEEEEecCchHHHHHHHHHHhcCc
Confidence 1 3345555555444 333 6 45789999999 99999986 457788888887653
No 12
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=99.88 E-value=1.9e-22 Score=202.68 Aligned_cols=215 Identities=14% Similarity=0.078 Sum_probs=151.2
Q ss_pred CccceeecCCCceeEEEEEecCCCCccEEEEcCccchhhhhh---------h-hccCCccEEEEEEcCCCCccccccchh
Q psy11141 105 GIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKKLAEQEKS---------S-REMADWKMHICSENNFPTAAGLASSAA 174 (566)
Q Consensus 105 dSLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~~~~~~~~~---------l-~~~~~~~v~I~s~nnIP~aaGLGSSAA 174 (566)
+||+++++ +|+++ ++. + +.+.++|..++....+ . ..+...+++|+++++||+++|||||||
T Consensus 31 ~sl~~ai~---l~~~v-~~~-~----~~i~i~~~~~~~~~~nlv~~a~~~~~~~~g~~~g~~i~i~~~IP~g~GLGsSsa 101 (271)
T 2v8p_A 31 LTLYQEIP---FYDEI-YIR-E----GVLRVETNIGIPQEENLVYKGLREFERITGIEINYSIFIQKNIPPGAGLGGGSS 101 (271)
T ss_dssp EEEEEEEE---EEEEE-EEE-E----SSCEEEESSCCCTTTCHHHHHHHHHHHHHCCCCCEEEEEECCSCTTSSSCHHHH
T ss_pred EEEEEEcC---cccEE-EEe-C----CeEEEEeCCCCCCCchHHHHHHHHHHHHhCCCCCeEEEEEeCCCCCCCCchHHH
Confidence 39999999 89999 875 2 3456665322221111 1 134456899999999999999999999
Q ss_pred hHHHHHHHHHHHhCCC--HHHHHHHHHHccCCchhhhcCCeEEEEeCCCCCCCCCCCccccccccceeEEEccCCCCCC-
Q psy11141 175 GYSCLVFTLAYALGLN--TSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWG- 251 (566)
Q Consensus 175 ~aAAla~Aln~L~gL~--~eeLs~iAr~GSGSaarSi~GGfV~w~~~~~G~~~dg~~~~~~~~~~~s~a~~I~~~~~wp- 251 (566)
.+||++.|+|++++++ .+||.++|++++++++++++||+++.. |. ++ ..++++ +|
T Consensus 102 ~a~a~l~al~~l~~~~l~~~el~~la~~~e~dv~~~~~gg~~~~~----g~---g~-----------~~~~l~----~~~ 159 (271)
T 2v8p_A 102 NLAVVLKKVNELLGSPLSEEELRELVGSISADAPFFLLGKSAIGR----GK---GE-----------VLEPVE----TEI 159 (271)
T ss_dssp HHHHHHHHHHHHTTCCSCHHHHHHHHHHHCTTTGGGGTCSEEEEE----TT---TT-----------EEEECC----CCC
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCCHHHHhcCCeEEEE----Ec---CC-----------EEEEcc----CCC
Confidence 9999999999999988 899999999999999999999998653 42 32 245664 25
Q ss_pred ceEEEEEEECCCCCCCCChHHHhhhccCCchHHHHHhhhccchHHHHHHHHHcCCHHHHHHHHHhchhhhhhcccccCCC
Q psy11141 252 SMRVIILVVNDQAKSTSSTDGMQRTTLTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPP 331 (566)
Q Consensus 252 ~L~ivilVv~~~~K~vsST~~mr~~v~ts~~~~~~v~~~~~~~v~~li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P~ 331 (566)
+++++++.++. .+ +|..+++.++... ..++..+ .+|.++|++.+++.+. |.||+....
T Consensus 160 ~~~~vl~~p~~---~~-sT~~~~~~~~~~~----------~~~~~~~-~al~~~d~~~~~~~~~---n~l~~~~~~---- 217 (271)
T 2v8p_A 160 SGKITLVIPQV---SS-STGRVYSSLREEH----------FVTPEYA-EEKIQRIISGEVEEIE---NVLGDIARE---- 217 (271)
T ss_dssp CSEEEEEECSS---CC-CHHHHHHTCCTTS----------CCCHHHH-HHHHHHHHTTCGGGCC---BHHHHHHHH----
T ss_pred CcEEEEEeCCC---CC-CHHHHHHhccccc----------CcchhHH-HHhhcCCHHHHHHHHh---CChhhHhHH----
Confidence 67777665433 34 5665554433221 1356667 9999999999988753 468876442
Q ss_pred ceeccccHHHHHHHHHHHHHhhCCceEEE-EeCCCcceEEeeccCC-HHHHHH
Q psy11141 332 IVYMNDTSHSIVRFVHEFNTVVGETKVAY-TFDAGPNACLYVLENT-VPLLLS 382 (566)
Q Consensus 332 i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~-tsGAGPnV~~l~~~~~-~~~v~~ 382 (566)
+.|+..++++ .+++. | . +. +|||||++|+++++++ .+++.+
T Consensus 218 ---~~p~l~~~~~---~~~~~-G-a--a~~mSGsG~~v~~l~~~~~~a~~~~~ 260 (271)
T 2v8p_A 218 ---LYPEINEVYR---FVEYL-G-F--KPFVSGSGSTVYFFGGASEELKKAAK 260 (271)
T ss_dssp ---HCHHHHHHHH---HHHHT-T-C--CCEECTTSSCEEESSCCCHHHHHHHH
T ss_pred ---hChHHHHHHH---HHHhC-C-C--ccCccccCcCeEEEeCCHHHHHHHHh
Confidence 3455555554 44433 7 3 68 9999999999997653 444544
No 13
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=99.86 E-value=3.4e-20 Score=191.25 Aligned_cols=238 Identities=12% Similarity=0.080 Sum_probs=159.0
Q ss_pred cccCCCccceeecCCCceeEEEEEecCCCCccEEEEcCc--cchhhh--------hhh-hccCCccEEEEEEcCCCCccc
Q psy11141 100 KSELNGIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGK--KLAEQE--------KSS-REMADWKMHICSENNFPTAAG 168 (566)
Q Consensus 100 ~lP~ndSLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~--~~~~~~--------~~l-~~~~~~~v~I~s~nnIP~aaG 168 (566)
..++.++|+++++ +|++++|+..+ ..++..++. .++.+. ..+ ..+...+++|+++++||.++|
T Consensus 38 ~~~Gg~~l~~aI~---~~~~v~v~~~~---~i~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~i~i~~~iP~g~G 111 (321)
T 4hac_A 38 VVYGETAIACAVE---LRTRVRAELND---SITIQSQIGRTGLDFEKHPYVSAVIEKMRKSIPINGVFLTVDSDIPVGSG 111 (321)
T ss_dssp GGGTCCEEEEEEE---EEEEEEEEECS---SEEEEETTEEESSCTTTSHHHHHHHHHHTTTSCCCCEEEEEEECCCSCTT
T ss_pred EEcCCEEEEEEec---cCEEEEEEECC---CEEEEECCCCcccccchhHHHHHHHHHHHHhCCCCCEEEEEECCCCCCCC
Confidence 3478899999999 79999988643 223333321 111111 111 233456899999999999999
Q ss_pred cccchhhHHHHHHHHHHHhCCC--HHHHHHHHHHcc--------C-CchhhhcCCeEEEEeCCCCCCCCCCCcccccccc
Q psy11141 169 LASSAAGYSCLVFTLAYALGLN--TSEVSHIARQGS--------G-SACRSMFGGFVRWKTLPEGQQSDGNGDIGRKQCE 237 (566)
Q Consensus 169 LGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~GS--------G-SaarSi~GGfV~w~~~~~G~~~dg~~~~~~~~~~ 237 (566)
||||||.++|++.|++++++++ .++|.++|..++ | ++++|+|||++.. . +++.
T Consensus 112 LGSSsa~~va~~~al~~l~~~~l~~~~l~~la~~~e~~~~g~~~~~D~~~~~~Gg~~~~-~-------~~~~-------- 175 (321)
T 4hac_A 112 LGSSAAVTIASIGALNELFGFGLSLQEIAKLGHEIEIKVQGAASPTDTYVSTFGGVVTI-P-------ERRK-------- 175 (321)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHSCCCSHHHHHHHHCSEEEE-T-------TCCE--------
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHcCCeEEE-c-------CCce--------
Confidence 9999999999999999999987 899999997654 2 6799999999865 3 2321
Q ss_pred ceeEEEccCCCCCCceEEEEEEECCCCCCCCChHHHhhhc----cCCch-HHHHHhhhccchHHHHHHHHHcCCHHHHHH
Q psy11141 238 LSNAEQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRTT----LTSTL-YEHRVNTIVPSRCSGMEEALRARDFPRFAE 312 (566)
Q Consensus 238 ~s~a~~I~~~~~wp~L~ivilVv~~~~K~vsST~~mr~~v----~ts~~-~~~~v~~~~~~~v~~li~AL~~~D~e~lge 312 (566)
.. + |+++++++.++.+ . +|..+.+.+ +..+. +++.+.+ ....+..++.||.++|++.|++
T Consensus 176 ---l~-~------p~~~~vlv~p~~~---~-sT~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~al~~~d~~~lg~ 240 (321)
T 4hac_A 176 ---LK-T------PDCGIVIGDTGVF---S-STKELVANVRQLRESYPDLIEPLMTS-IGKISRIGEQLVLSGDYASIGR 240 (321)
T ss_dssp ---EC-C------CCCEEEEEECCCC---C-CHHHHHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHHHHHTCHHHHHH
T ss_pred ---ec-c------CCCEEEEEECCCC---c-cHHHHHHHHHHHHhcCHHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHH
Confidence 11 2 4566665554432 3 455443221 11221 3333333 2334667889999999999999
Q ss_pred HHHhchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCc--ceEEeeccCCHHHHHHHHHhh
Q psy11141 313 LTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGP--NACLYVLENTVPLLLSTLVQY 387 (566)
Q Consensus 313 l~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGP--nV~~l~~~~~~~~v~~~L~~~ 387 (566)
+|..+...+.+ +....|+..++++.+++ . | ..++.+||||| ++++++++++.+++.++|++.
T Consensus 241 ~~~~~~~~~~~--------~~v~~p~l~~l~~~a~~---~-G-a~ga~~SGaG~GG~v~al~~~~~a~~~~~~l~~~ 304 (321)
T 4hac_A 241 LMNVNQGLLDA--------LGVNILELSQLIYSARA---A-G-AFGAKITGAGGGGCMVALTAPEKCNQVAEAVAGA 304 (321)
T ss_dssp HHHHHHHHHHH--------HTCCCHHHHHHHHHHHH---T-T-CSEEEECSSCSSSEEEEEECSTTHHHHHHHHHHT
T ss_pred HHHHHHHHHhh--------cCCCCHHHHHHHHHHHH---C-C-CCEEEECccCCCCEEEEEcCHHHHHHHHHHHHhC
Confidence 98643322221 11234555566555444 3 6 45789999999 899999777788899988875
No 14
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=99.85 E-value=1.1e-20 Score=189.79 Aligned_cols=220 Identities=11% Similarity=0.063 Sum_probs=149.2
Q ss_pred CccceeecCCCceeEEEEEecCCCCccEEEEcCccchhhh--------hhh-hccCCccEEEEEEcCCCCccccccchhh
Q psy11141 105 GIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKKLAEQE--------KSS-REMADWKMHICSENNFPTAAGLASSAAG 175 (566)
Q Consensus 105 dSLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~~~~~~~--------~~l-~~~~~~~v~I~s~nnIP~aaGLGSSAA~ 175 (566)
+||+++++ +|++++|+.+ +.++..++ .++ ++ ..+ ..+...+++|+++++||+++|||||||.
T Consensus 27 ~sl~~ai~---l~~~v~~~~~----~~~i~~~~-~~~-~~n~v~~a~~~~~~~~g~~~g~~i~i~~~IP~g~GLGSSsa~ 97 (275)
T 1uek_A 27 HTLFAPFS---LADRLVVEPV----SSGLHFQG-PYG-RENLAYRAASLYLEAAGQPGGVRILLEKRIPEGAGLGGGSSD 97 (275)
T ss_dssp EEEEEEEE---EEEEEEEEEE----SSCEEEES-TTG-GGSHHHHHHHHHHHHTTCCCEEEEEEECCSCSSSSSCHHHHH
T ss_pred eEEEEEcC---CCCEEEEEEC----cEEEEEcC-CCC-CccHHHHHHHHHHHHhCCCCCEEEEEecCCCCcCcccHHHHH
Confidence 49999999 8999999862 24566665 332 11 111 2344568999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHccCCchhhhcCCeEEEEeCCCCCCCCCCCccccccccceeEEEccCCCCCCceEE
Q psy11141 176 YSCLVFTLAYALGLNTSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRV 255 (566)
Q Consensus 176 aAAla~Aln~L~gL~~eeLs~iAr~GSGSaarSi~GGfV~w~~~~~G~~~dg~~~~~~~~~~~s~a~~I~~~~~wp~L~i 255 (566)
+||++.|+|++++++. +|.++|+..+++++++++||++.+. |. ++ ...+++ .|++++
T Consensus 98 a~a~l~al~~l~~~~l-~l~~la~~~g~dv~~~~~Gg~~~~~----g~---g~-----------~~~~l~----~~~~~~ 154 (275)
T 1uek_A 98 AAQVLLALQALYPAEV-DLFALARTLGADVPFFLLGRGAEAR----GV---GE-----------RLKPLA----LPPVPA 154 (275)
T ss_dssp HHHHHHHHHHHSCSCC-CHHHHHHHHCTTHHHHHHCSEEEEE----TT---TT-----------EEEEEC----CCCEEE
T ss_pred HHHHHHHHHHHcCCCh-HHHHHHHHhCCChHHHhcCCeEEEE----cc---Cc-----------eeEEcc----CCCcEE
Confidence 9999999999999876 8999999988999999999998653 42 32 245664 257777
Q ss_pred EEEEECCCCCCCCChHHHhhhccCCchHHHHHhhhccchHHHHHHHHHcCCHHHHHHHHHhchhhhhhcccccCCCceec
Q psy11141 256 IILVVNDQAKSTSSTDGMQRTTLTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYM 335 (566)
Q Consensus 256 vilVv~~~~K~vsST~~mr~~v~ts~~~~~~v~~~~~~~v~~li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P~i~yl 335 (566)
+++.++. .+ +|..+.+.++.. .++ ...++..++.+|.++ ++. +.| | .|+.... .+
T Consensus 155 vl~~p~~---~~-sT~~~~~~~~~~-----~~~--~~~~~~~~~~al~~~-~~~--~~~--n--~l~~~~~-------~~ 209 (275)
T 1uek_A 155 VVFFPGL---RV-PTPLVYRAVRPE-----DFG--PDLPVEAILEALARG-EEP--PYW--N--SLEGPAF-------RL 209 (275)
T ss_dssp EEEECCC---CC-CHHHHHHTCCGG-----GCC--CCCCHHHHHHHHHHT-CCC--SCC--B--TTHHHHH-------HH
T ss_pred EEEeCCC---CC-chHHHHHhCchh-----hcc--cCCChHHHHHHHHhc-ccc--ccc--c--chHHHHH-------Hh
Confidence 7665432 34 455444333311 111 134577888999887 554 322 2 3433222 23
Q ss_pred cccHHHHHHHHHHHHHhhCCceEEEEeCCCcceEEeeccC-CHHHHHHHHHh
Q psy11141 336 NDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLEN-TVPLLLSTLVQ 386 (566)
Q Consensus 336 ~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV~~l~~~~-~~~~v~~~L~~ 386 (566)
.|+..++++.+++ . | ..++.+|||||++|++++.+ +.+++.+.+++
T Consensus 210 ~p~l~~l~~~~~~---~-G-a~ga~~SGsG~~v~~l~~~~~~~~~~~~~l~~ 256 (275)
T 1uek_A 210 FPELKEVRGRMRA---L-G-LRGVLMSGSGSAFFGLAEGPDHARRAAEALRA 256 (275)
T ss_dssp CTHHHHHHHHHHH---T-T-CEEEEECTTSSCEEEECSSHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHh---C-C-CCEEEEeccccCeEEEeCCHHHHHHHHHHhhh
Confidence 4666666655443 3 6 46789999999999999754 35556666554
No 15
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=99.85 E-value=6.7e-20 Score=195.04 Aligned_cols=273 Identities=20% Similarity=0.161 Sum_probs=173.6
Q ss_pred cCCCccceeecCCCceeEEEEEecCCCCccEEEE--cCcc--------ch-------hhhhh--------h-hc--cCCc
Q psy11141 102 ELNGIEPIEITFQRMHAKTSVALSPDFTEDKLWL--NGKK--------LA-------EQEKS--------S-RE--MADW 153 (566)
Q Consensus 102 P~ndSLSltLd~~~lyt~TtV~~s~~~~~d~i~l--nG~~--------~~-------~~~~~--------l-~~--~~~~ 153 (566)
.+.++|+++++ +|++++|+..++ +.+.+ .+.. ++ ....+ + .. ....
T Consensus 67 ~G~~~l~~aI~---l~~~v~v~~~~~---~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~n~v~~~~~~l~~~g~~~~~ 140 (419)
T 1pie_A 67 NGGYVFPASIT---IGTTGLARLRED---KKVKLYSENFPKLGVIEFDLDEVEKKDGELWSNYVKGMIVMLKGAGYEIDK 140 (419)
T ss_dssp TTCEEEEEEEE---EEEEEEEEECSS---SEEEEEETTCGGGCCEEEETTCTTSCCTTCTHHHHHHHHHHHHHTTCCCCS
T ss_pred CCCEEEEEEEc---ccEEEEEEECCC---CEEEEEECCCCCcceeEEecccccCCCCcCHHHHHHHHHHHHHHhCCCCCC
Confidence 56778999999 899999886542 23333 2210 10 00011 1 12 2236
Q ss_pred cEEEEEEcCCCCccccccchhhHHHHHHHHHHHhCCC--HHHHHHHHHHc--------cC--CchhhhcCC--eEEEEeC
Q psy11141 154 KMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLN--TSEVSHIARQG--------SG--SACRSMFGG--FVRWKTL 219 (566)
Q Consensus 154 ~v~I~s~nnIP~aaGLGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~G--------SG--SaarSi~GG--fV~w~~~ 219 (566)
+++|.++++||.++|||||||.+||++.|++++++++ .++|.++|..+ +| +.++|+||| .+++..
T Consensus 141 g~~i~i~s~IP~gaGLGSSaA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~d- 219 (419)
T 1pie_A 141 GFELLIKGEIPTASGLSSSASLELLVGVVLDDLFNLNVPRLELVQLGQKTENDYIGVNSGILDQFAIGFGEVKKAIELD- 219 (419)
T ss_dssp CEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHCBTTEEEEEE-
T ss_pred CEEEEEECCCCCCCChhHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccchhHHHHHhccCCeEEEee-
Confidence 8999999999999999999999999999999999988 89999999764 34 778999998 444544
Q ss_pred CCCCCCCCCCccccccccceeEEEccCCCCCCceEEEEEEECCCCCCCCC--------hHHHhhhcc----------CCc
Q psy11141 220 PEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSS--------TDGMQRTTL----------TST 281 (566)
Q Consensus 220 ~~G~~~dg~~~~~~~~~~~s~a~~I~~~~~wp~L~ivilVv~~~~K~vsS--------T~~mr~~v~----------ts~ 281 (566)
+. +. ..++++.+ +++++++++.+.....+..+ ++.+++.+. ..+
T Consensus 220 --~~---~~-----------~~~~l~~~--~~~~~~vl~~~~~~~~t~~~~y~~r~~~~~~a~~~l~~~~~v~~l~~~~~ 281 (419)
T 1pie_A 220 --CN---TL-----------KYEMVPVE--LRDYDIVIMNTNKPRALTESKYNERFAETREALKRMQTRLDIQSLGELSN 281 (419)
T ss_dssp --TT---TC-----------CEEEEECC--CTTEEEEEEECCCCCCTTCHHHHHHHHHHHHHHHHHHHHCCCSSGGGCCH
T ss_pred --cC---CC-----------ceEEeecC--CCCcEEEEEECCCccccccchHHHHHHHHHHHHHHHhhccccCchhhCCH
Confidence 32 22 24555421 24676665554332211100 011111111 011
Q ss_pred -h------------HHHHHhhh--ccchHHHHHHHHHcCCHHHHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHH
Q psy11141 282 -L------------YEHRVNTI--VPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFV 346 (566)
Q Consensus 282 -~------------~~~~v~~~--~~~~v~~li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v 346 (566)
. ...+...+ ...++..++.||+++|++.|+++|..+.+.+++.+. ...|+...+++.+
T Consensus 282 ~~~~~~~~~l~~~~~~~~~~~~v~e~~r~~~~~~al~~~d~~~lg~lm~~~~~~l~~~~~-------~~~p~l~~l~~~a 354 (419)
T 1pie_A 282 EEFDANTDLIGDETLIKRARHAVYENNRTKIAQKAFVAGNLTKFGELLNASHASLKDDYE-------VTGLELDTLAETA 354 (419)
T ss_dssp HHHHHTGGGTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSC-------CCCHHHHHHHHHH
T ss_pred HHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC-------CCCHHHHHHHHHH
Confidence 0 11111110 123688899999999999999998766666665432 2345555665554
Q ss_pred HHHHHhhCCceEEEEeCCC--cceEEeeccCCHHHHHHHHHhhCCCCCCCCCccccCcccccCCCCCCCCCCCCCCCCCc
Q psy11141 347 HEFNTVVGETKVAYTFDAG--PNACLYVLENTVPLLLSTLVQYFPPSSGISAPYIRGLEYLNILPPVQLPSFTPQPAGLL 424 (566)
Q Consensus 347 ~~l~~~~G~~~~a~tsGAG--PnV~~l~~~~~~~~v~~~L~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (566)
.+. .| ..++.++||| |++++|+++++.+++.+.|++.|.... +..
T Consensus 355 ~~~---~G-a~ga~lsGaG~Gg~v~al~~~~~a~~~~~~l~~~~~~~~--------g~~--------------------- 401 (419)
T 1pie_A 355 QKQ---AG-VLGARMTGAGFGGCAIALVAHDNVSAFRKAVGQVYEEVV--------GYP--------------------- 401 (419)
T ss_dssp HHS---TT-EEEEEECSSCSSSEEEEEEEGGGHHHHHHHHHHHHHHHH--------SSC---------------------
T ss_pred Hhc---CC-CceeeEecCCCCeEEEEEEchhhHHHHHHHHHHHHHHhc--------CCC---------------------
Confidence 443 15 5678999998 999999988778889988887653211 011
Q ss_pred cEEEEccCCCCcEEc
Q psy11141 425 QYLISTKIGSGPKIL 439 (566)
Q Consensus 425 ~~ii~t~vG~Gp~~~ 439 (566)
..+++++++.|++++
T Consensus 402 ~~~~~~~~~~Ga~v~ 416 (419)
T 1pie_A 402 ASFYVAQIGSGSTKL 416 (419)
T ss_dssp CEEEECCBCCCSBCC
T ss_pred CeEEEEcCCCCeeec
Confidence 147889999999876
No 16
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=99.84 E-value=3.5e-20 Score=190.90 Aligned_cols=243 Identities=14% Similarity=0.070 Sum_probs=156.1
Q ss_pred CccceeecCCCceeEEEEEecCCCCccEEEEcCcc-------c--h-hh--h----hh---h-hccC-CccEEEEEEcCC
Q psy11141 105 GIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKK-------L--A-EQ--E----KS---S-REMA-DWKMHICSENNF 163 (566)
Q Consensus 105 dSLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~~-------~--~-~~--~----~~---l-~~~~-~~~v~I~s~nnI 163 (566)
.+|+++++ +|++++|+..++ +.+.+.+.. + + .. . .. + ..+. ..+++|+++++|
T Consensus 23 ~~l~~ai~---~~~~v~v~~~~~---~~i~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~i~i~s~I 96 (350)
T 2cz9_A 23 YVMPMAIN---LYTKIEAEKHGE---VILYSEHFGEERKFSLNDLRKENSWIDYVKGIFWVLKESDYEVGGIKGRVSGNL 96 (350)
T ss_dssp EEEEEEEE---EEEEEEEEEESS---EEEEETTTTEEEEECTTCCCCCSSTHHHHHHHHHHHHHTTCCCCEEEEEEECSC
T ss_pred EEEEEEee---ceEEEEEEECCC---CeEEEEECCCCccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCeEEEEECCC
Confidence 37999999 799998886442 345554421 1 1 01 0 11 1 1222 257999999999
Q ss_pred CCccccccchhhHHHHHHHHHHHhCCC--HHHHHHHHHHccC---Cc-------hhhhcCC--eEEEEeCCCCCCCCCCC
Q psy11141 164 PTAAGLASSAAGYSCLVFTLAYALGLN--TSEVSHIARQGSG---SA-------CRSMFGG--FVRWKTLPEGQQSDGNG 229 (566)
Q Consensus 164 P~aaGLGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~GSG---Sa-------arSi~GG--fV~w~~~~~G~~~dg~~ 229 (566)
|.++|||||||.+||++.|++++++++ .+||.++|..+++ ++ +.+.+|| -+++.. . .+
T Consensus 97 P~g~GLGSSaA~~vA~~~al~~l~~~~l~~~el~~la~~~e~~~~g~~~gi~d~~~~~~g~~~~~~~~d---~---~~-- 168 (350)
T 2cz9_A 97 PLGAGLSSSASFEVGILETLDKLYNLKLDSLSKVLLAKKAENEFVGVPCGILDQFAVVFGREGNVIFLD---T---HT-- 168 (350)
T ss_dssp CTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHCCTTEEEEEE---T---TT--
T ss_pred CCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccchhHHHHHhcCCCeEEEEe---c---CC--
Confidence 999999999999999999999999988 8999999987653 22 3344553 122222 1 11
Q ss_pred ccccccccceeEEEccCCCCCCceEEEEEEECCCCCCCCChHHHhh----------hc------c--------CCc-hH-
Q psy11141 230 DIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTDGMQR----------TT------L--------TST-LY- 283 (566)
Q Consensus 230 ~~~~~~~~~s~a~~I~~~~~wp~L~ivilVv~~~~K~vsST~~mr~----------~v------~--------ts~-~~- 283 (566)
...++++.+ ++++++++.+..+. .+ +|..+.. .+ + -.+ .+
T Consensus 169 ---------~~~~~l~~~---~~~~~vl~~~~~~~-~~-~t~~~~~r~~~~~~a~~~~~~~~lr~~~~~~~~~l~~~~~~ 234 (350)
T 2cz9_A 169 ---------LDYEYIPFP---KDVSILVFYTGVRR-EL-ASSEYAERKHIAEESLKILGKGSSKEVREGELSKLPPLHRK 234 (350)
T ss_dssp ---------CCEEEEECC---TTEEEEEEECSCC------CHHHHHHHHHHHHHHHHHTCSCGGGCCGGGGGGSCHHHHH
T ss_pred ---------CcEEEEcCC---CCcEEEEEECCCCC-cc-ccchHHHHHHHHHHHHHHhChhhhhhCCHHHHhhCCHHHHH
Confidence 124566431 47777766654332 23 3332221 00 0 011 11
Q ss_pred --HHHHhhhccchHHHHHHHHHcCCHHHHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEE
Q psy11141 284 --EHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYT 361 (566)
Q Consensus 284 --~~~v~~~~~~~v~~li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~t 361 (566)
.+.+.+ ..++..++.||.++|++.|+++|..+.+.||+.+.. ..|+..++++.+++ . | ..++.+
T Consensus 235 ~~~~~~~~--~~~~~~~~~al~~~d~~~lg~~~~~~~~~l~~~~~~-------~~p~l~~l~~~~~~---~-G-a~ga~l 300 (350)
T 2cz9_A 235 FFGYIVRE--NARVLEVRDALKEGNVEEVGKILTTAHWDLAKNYEV-------SCKELDFFVERALK---L-G-AYGARL 300 (350)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC-------CCHHHHHHHHHHHH---T-T-CSEEEE
T ss_pred HHHHHhhH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHH---c-C-CCEEEE
Confidence 122221 245888999999999999999998777889885442 34555555554444 3 6 457899
Q ss_pred eCCC--cceEEeeccCCHHHHHHHHHhhCC
Q psy11141 362 FDAG--PNACLYVLENTVPLLLSTLVQYFP 389 (566)
Q Consensus 362 sGAG--PnV~~l~~~~~~~~v~~~L~~~f~ 389 (566)
|||| |++++++++++.+++.+.|++.|.
T Consensus 301 sGaG~G~~v~~l~~~~~~~~~~~~l~~~~~ 330 (350)
T 2cz9_A 301 TGAGFGGSAIALVDKEDAETIGEEILREYL 330 (350)
T ss_dssp CSSCSSSEEEEEEEGGGHHHHHHHHHHHHH
T ss_pred ecCCCceEEEEEEchhhHHHHHHHHHHHHH
Confidence 9999 999999988778888888887654
No 17
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=99.83 E-value=3.2e-19 Score=181.76 Aligned_cols=236 Identities=15% Similarity=0.113 Sum_probs=156.3
Q ss_pred cCCCccceeecCCCceeEEEEEecCCCCccEEEEcCccc------------hhhh-------hh---h-h----cc--CC
Q psy11141 102 ELNGIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKKL------------AEQE-------KS---S-R----EM--AD 152 (566)
Q Consensus 102 P~ndSLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~~~------------~~~~-------~~---l-~----~~--~~ 152 (566)
.++++|+++++ +|++++|+..++ +.+.+.+... +.++ .. + . .+ ..
T Consensus 24 ~G~~~l~~ai~---~~~~v~v~~~~~---~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (317)
T 1kkh_A 24 YGYRAISMAID---LTSTIEIKETQE---DEIILNLNDLNKSLGLNLNEIKNINPNNFGDFKYCLCAIKNTLDYLNIEPK 97 (317)
T ss_dssp GTCCEEEEEEE---EEEEEEEEECCS---SEEEEEETTTTEEEEEETTTGGGCCGGGSGGGHHHHHHHHHHHHHTTCCCC
T ss_pred cCCEEEEEEec---CeEEEEEEECCC---CeEEEEeCCCCCceEEEeccCCccCcccchHHHHHHHHHHHHHHhhcccCC
Confidence 47789999999 799999986542 3455543211 1000 00 1 1 11 24
Q ss_pred ccEEEEEEcCCCCccccccchhhHHHHHHHHHHHhCCC--HHHHHHHHHHcc--------C-CchhhhcCCeEEEEeCCC
Q psy11141 153 WKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLN--TSEVSHIARQGS--------G-SACRSMFGGFVRWKTLPE 221 (566)
Q Consensus 153 ~~v~I~s~nnIP~aaGLGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~GS--------G-SaarSi~GGfV~w~~~~~ 221 (566)
.+++|+++++||.++|||||||.+||++.|++++++++ .++|.++|...+ | ++++|+|||++++ .
T Consensus 98 ~g~~i~i~~~iP~~~GLGsSsa~~~a~~~al~~l~~~~l~~~~l~~~a~~~E~~~~g~~sg~D~~~~~~Gg~~~~-~--- 173 (317)
T 1kkh_A 98 TGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDDEIAKLGYMVEKEIQGKASITDTSTITYKGILEI-K--- 173 (317)
T ss_dssp SCEEEEEEECSCSSSSSCHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHSSSCCSHHHHHHHHCSEEEE-S---
T ss_pred CCeEEEEecCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHhCCeEEE-c---
Confidence 68999999999999999999999999999999999987 899999997652 5 8899999999866 4
Q ss_pred CCCCCCCCccccccccceeEEEccCCCCCC-c----eEEEEEEECCCCCCCCChHHHhhhccCCchHHHHHhhhccchHH
Q psy11141 222 GQQSDGNGDIGRKQCELSNAEQIISESYWG-S----MRVIILVVNDQAKSTSSTDGMQRTTLTSTLYEHRVNTIVPSRCS 296 (566)
Q Consensus 222 G~~~dg~~~~~~~~~~~s~a~~I~~~~~wp-~----L~ivilVv~~~~K~vsST~~mr~~v~ts~~~~~~v~~~~~~~v~ 296 (566)
+ +. .++++. .|| + ..++++.+..+ . +|..+++.+++.....+.+. ....
T Consensus 174 ~-----~~-----------~~~~~~--~~~~~l~~~~~~vl~~~~~~---~-~T~~~~~~~~~~~~~~~~~~----~~~~ 227 (317)
T 1kkh_A 174 N-----NK-----------FRKIKG--EFEEFLKNCKFLIVYAEKRK---K-KTAELVNEVAKIENKDEIFK----EIDK 227 (317)
T ss_dssp S-----SC-----------EEEECH--HHHHHHHTCCEEEEEEECCC---S-CHHHHHHHHHTCTTHHHHHH----HHHH
T ss_pred C-----CC-----------ceEecC--CcccccccCcEEEEEECCCc---C-cHHHHHHHHHHhhccHHHHH----HHHH
Confidence 3 11 334431 122 2 24555555432 3 56666554433222233332 2234
Q ss_pred HHHHHHHcCCHHHHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCc--ceEEeecc
Q psy11141 297 GMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGP--NACLYVLE 374 (566)
Q Consensus 297 ~li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGP--nV~~l~~~ 374 (566)
.+.+|+..+|++.|+++|..+.+.++. +....|+..++++.+++ . | .++.+||||| +|++++++
T Consensus 228 ~~~~a~~~~d~~~l~~~~~~~~~~~~~--------~~~~~p~l~~~~~~~~~---~-G--~ga~~sGaG~GG~v~~l~~~ 293 (317)
T 1kkh_A 228 VIDEALKIKNKEDFGKLMTKNHELLKK--------LNISTPKLDRIVDIGNR---F-G--FGAKLTGAGGGGCVIILVNE 293 (317)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHT--------TTCCCHHHHHHHHHHHH---H-S--SEEEECSSSSSEEEEEECCG
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHh--------cCCCCHHHHHHHHHHHh---c-C--ceeEEeecCCCCEEEEEech
Confidence 477899999999999988543223322 12235666666655544 3 5 3689999999 99999987
Q ss_pred CCHHHHHHHHHhh
Q psy11141 375 NTVPLLLSTLVQY 387 (566)
Q Consensus 375 ~~~~~v~~~L~~~ 387 (566)
++.+++.+.|++.
T Consensus 294 ~~~~~~~~~l~~~ 306 (317)
T 1kkh_A 294 EKEKELLKELNKE 306 (317)
T ss_dssp GGHHHHHHHHHTS
T ss_pred hhHHHHHHHHHhc
Confidence 7778888887753
No 18
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=99.83 E-value=4e-19 Score=180.37 Aligned_cols=246 Identities=14% Similarity=0.095 Sum_probs=155.4
Q ss_pred ccCCCccceeecCCCceeEEEEEecCCCCccEEEEcCc--cchh--h--h---hhhh-c-cCCccEEEEEEcCCCCcccc
Q psy11141 101 SELNGIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGK--KLAE--Q--E---KSSR-E-MADWKMHICSENNFPTAAGL 169 (566)
Q Consensus 101 lP~ndSLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~--~~~~--~--~---~~l~-~-~~~~~v~I~s~nnIP~aaGL 169 (566)
.++.++|+++++ ..+++++|+..++....++...+. .++. . + +... . ....+++|+++++||.++||
T Consensus 24 ~~g~~~l~~ai~--~~~~~v~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~i~i~~~iP~g~GL 101 (308)
T 2x7i_A 24 TFGEPAIAVPFN--AGKIKVLIEALESGNYSSIKSDVYDGMLYDAPDHLKSLVNRFVELNNITEPLAVTIQTNLPPSRGL 101 (308)
T ss_dssp CTTSCEEEEEEE--EEEEEEEEEECCTTCCCEEEEEECSSCCCCTTSCHHHHHHHHHHHTTCCSCEEEEEEECCCTTSSS
T ss_pred ecCCeEEEEEEc--CCEEEEEEEECCCCCeeEEEecCCCCChhhhhHHHHHHHHHHHHHHhhCCCeEEEEeccCCCCCCc
Confidence 477889999999 235888888654311022322111 1211 1 1 1111 1 11137999999999999999
Q ss_pred ccchhhHHHHHHHHHHHhCCC--HHHHHHHHHHcc--------C-CchhhhcCCeEEEEeCCCCCCCCCCCccccccccc
Q psy11141 170 ASSAAGYSCLVFTLAYALGLN--TSEVSHIARQGS--------G-SACRSMFGGFVRWKTLPEGQQSDGNGDIGRKQCEL 238 (566)
Q Consensus 170 GSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~GS--------G-SaarSi~GGfV~w~~~~~G~~~dg~~~~~~~~~~~ 238 (566)
|||||.+||++.|+|++++++ .++|.++|++++ | +++.+++||++.+.. | +
T Consensus 102 GSSsa~~~a~~~al~~l~~~~l~~~~l~~la~~~E~~~~g~~sG~d~~~~~~g~~~~~~~---g-----~---------- 163 (308)
T 2x7i_A 102 GSSAAVAVAFVRASYDFLGKSLTKEELIEKANWAEQIAHGKPSGIDTQTIVSGKPVWFQK---G-----H---------- 163 (308)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHSSCCHHHHHHHHHTSCEEEET---T-----E----------
T ss_pred cHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHCCCCchHHHHHhhCCceEEEEc---C-----C----------
Confidence 999999999999999999987 899999998762 4 567788999986654 3 1
Q ss_pred eeEEEccCCCCCCceEEEEEEECCCCCCCCChHHHhhhc---cCCchHHHHHhhhccchHHHHHHHHHcCCHHHHHHHHH
Q psy11141 239 SNAEQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRTT---LTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAELTM 315 (566)
Q Consensus 239 s~a~~I~~~~~wp~L~ivilVv~~~~K~vsST~~mr~~v---~ts~~~~~~v~~~~~~~v~~li~AL~~~D~e~lgel~~ 315 (566)
..++++.+ +++ .+++++... ++++.+.++.+. +..+.... ++. ...++..++.+|+++|++.|+++|.
T Consensus 164 -~~~~~~~~---~~~--~~vi~~~~~-~~sT~~~~~~l~~~~~~~~~~~~-~~~-~~~~~~~~~~al~~~d~~~l~~~~~ 234 (308)
T 2x7i_A 164 -AETLKTLS---LDG--YMVVIDTGV-KGSTRQAVHDVHKLCEDPQYMSH-VKH-IGKLVLRASDVIEHHKFEALADIFN 234 (308)
T ss_dssp -EEECSCCC---BSS--EEEEEECCC---CCSCCCC--------CCHHHH-HHH-HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -CceEeccC---CCc--eEEEEECcC-CCCHHHHHHHHHHHHhcCchHHH-HHH-HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 24555321 233 344444332 343433333221 11221111 333 2346778889999999999999874
Q ss_pred hchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCc--ceEEeecc-CCHHHHHHHHHhhC
Q psy11141 316 KDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGP--NACLYVLE-NTVPLLLSTLVQYF 388 (566)
Q Consensus 316 ~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGP--nV~~l~~~-~~~~~v~~~L~~~f 388 (566)
.+|+.+++. ....|+..++++.+++ . | ..++.+||||| +|++++++ ++.+++.+.|++.+
T Consensus 235 ----~~~~~~~~~----~~~~p~l~~l~~~~~~---~-G-a~ga~~sGaG~GG~v~~l~~~~~~~~~~~~~l~~~~ 297 (308)
T 2x7i_A 235 ----ECHADLKAL----TVSHDKIEQLMKIGKE---N-G-AIAGKLTGAGRGGSMLLLAKDLPTAKNIVKAVEKAG 297 (308)
T ss_dssp ----HHHHHHHHH----SCCCHHHHHHHHHHHH---T-T-CSEEEESBTTTCSSEEEEESSHHHHHHHHHHHHHTT
T ss_pred ----HHHHHHHHh----CCCCHHHHHHHHHHHH---C-C-CcEEEeeccCCCcEEEEEeCChhHHHHHHHHHHhCC
Confidence 366666641 1234555566555444 3 6 45789999999 99999986 55778888888765
No 19
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=99.81 E-value=2.4e-18 Score=181.77 Aligned_cols=222 Identities=15% Similarity=0.123 Sum_probs=148.4
Q ss_pred ccEEEEEEcCCCCccccccchhhHHHHHHHHHHHhCCC--HHHHHHHHHHc--------cC--CchhhhcCCe--EEEEe
Q psy11141 153 WKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLN--TSEVSHIARQG--------SG--SACRSMFGGF--VRWKT 218 (566)
Q Consensus 153 ~~v~I~s~nnIP~aaGLGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~G--------SG--SaarSi~GGf--V~w~~ 218 (566)
.+++|+++++||.++|||||||.+||++.|+++++|++ .++|.++|..+ +| +.++|+|||+ +.+..
T Consensus 130 ~g~~i~i~s~IP~gaGLGSSaA~~vA~~~al~~l~~~~l~~~~l~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~~ 209 (399)
T 1wuu_A 130 PGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLID 209 (399)
T ss_dssp CEEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHHHHTCCCCCSHHHHHHHHCCTTEEEEEE
T ss_pred CCeEEEEECCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHhccCCeEEEEe
Confidence 57999999999999999999999999999999999988 89999999764 45 7789999994 33333
Q ss_pred CCCCCCCCCCCccccccccceeEEEccCCCCCCceEEEEEEECCCCCCCCC-----hHHH---hhhccC-----------
Q psy11141 219 LPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSS-----TDGM---QRTTLT----------- 279 (566)
Q Consensus 219 ~~~G~~~dg~~~~~~~~~~~s~a~~I~~~~~wp~L~ivilVv~~~~K~vsS-----T~~m---r~~v~t----------- 279 (566)
+. +. ..++++.+ ++++.++++.+..+..+..+ ++.+ ++.+..
T Consensus 210 ---~~---~~-----------~~~~~~~~--~~~~~~vl~~~~~~~~t~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~ 270 (399)
T 1wuu_A 210 ---CR---SL-----------ETSLVPLS--DPKLAVLITNSNVRHSLASSEYPVRRRQCEEVARALGKESLREVQLEEL 270 (399)
T ss_dssp ---TT---TC-----------CEEEEECC--CSSEEEEEEEEEEEC--CTTTHHHHHHHHHHHHHHTTCSSTTSCCHHHH
T ss_pred ---cC---CC-----------ceEEecCC--CCCeEEEEEECCCccccccccHHHHHHHHHHHHHHhChhhhhcCCHHHH
Confidence 31 22 24455421 24777776665443322111 1111 111100
Q ss_pred -------Cch-H---HHHHhhhccchHHHHHHHHHcCCHHHHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHHHH
Q psy11141 280 -------STL-Y---EHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHE 348 (566)
Q Consensus 280 -------s~~-~---~~~v~~~~~~~v~~li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~ 348 (566)
.+. + .+.+. ...++..++.||+++|++.|+++|..+.+.++..+. ...|+..++++.+++
T Consensus 271 ~~~~~~l~~~~~~r~~~~~~--e~~r~~~~~~al~~~d~~~lg~~m~~~h~~l~~~~~-------~~~p~l~~l~~~a~~ 341 (399)
T 1wuu_A 271 EAARDLVSKEGFRRARHVVG--EIRRTAQAAAALRRGDYRAFGRLMVESHRSLRDDYE-------VSCPELDQLVEAALA 341 (399)
T ss_dssp TTGGGGSCHHHHHHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTSC-------CCCHHHHHHHHHHHT
T ss_pred HHHHhhcCHHHHHHHHHHHh--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHh
Confidence 000 0 11121 123588899999999999999998755555544322 234555555544433
Q ss_pred HHHhhCCceEEEEeCCC--cceEEeeccCCHHHHHHHHHhhCCCCCCCCCccccCcccccCCCCCCCCCCCCCCCCCccE
Q psy11141 349 FNTVVGETKVAYTFDAG--PNACLYVLENTVPLLLSTLVQYFPPSSGISAPYIRGLEYLNILPPVQLPSFTPQPAGLLQY 426 (566)
Q Consensus 349 l~~~~G~~~~a~tsGAG--PnV~~l~~~~~~~~v~~~L~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (566)
+ . | ..++.++||| |++++|+++++.+++.+.|++.|.. . ..
T Consensus 342 ~--~-G-a~ga~~sGaG~Gg~v~~l~~~~~~~~~~~~l~~~~~~-~--------------------------------~~ 384 (399)
T 1wuu_A 342 V--P-G-VYGSRMTGGGFGGCTVTLLEASAAPHAMRHIQEHYGG-T--------------------------------AT 384 (399)
T ss_dssp S--T-T-EEEEEECSSCSEEEEEEEEEGGGHHHHHHHHHHHCSS-C--------------------------------CE
T ss_pred c--C-C-ceEEeeecCCCccEEEEEEccchHHHHHHHHHHHhCC-C--------------------------------Cc
Confidence 1 2 6 5678999999 9999999887788999999987721 1 13
Q ss_pred EEEccCCCCcEEc
Q psy11141 427 LISTKIGSGPKIL 439 (566)
Q Consensus 427 ii~t~vG~Gp~~~ 439 (566)
+++++++.|++++
T Consensus 385 ~~~~~~~~Ga~~~ 397 (399)
T 1wuu_A 385 FYLSQAADGAKVL 397 (399)
T ss_dssp EEEECCCCCSEEC
T ss_pred EEEEcCCCCeeec
Confidence 7788899999875
No 20
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=99.80 E-value=2.3e-18 Score=178.74 Aligned_cols=247 Identities=10% Similarity=0.032 Sum_probs=163.5
Q ss_pred ccCCCccceeecCCCceeEEEEEecCCCCccEEEEcCcc--c---hhhh-hh-------h-h----cc-CCccEEEEEEc
Q psy11141 101 SELNGIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKK--L---AEQE-KS-------S-R----EM-ADWKMHICSEN 161 (566)
Q Consensus 101 lP~ndSLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~~--~---~~~~-~~-------l-~----~~-~~~~v~I~s~n 161 (566)
-|++++|+++++ +|++++|+..++ .++.-++.. + +.++ .. + + .+ ...+++|++++
T Consensus 22 y~G~~~l~~Ai~---~~~~v~v~~~~~---~~i~s~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~g~~~~g~~i~i~s 95 (337)
T 2pg9_A 22 EPGQLALIKDIP---IYMRAEIAFSDS---YRIYSDMFDFAVDLRPNPDYSLIQETIALMGDFLAVRGQNLRPFSLAIYG 95 (337)
T ss_dssp STTCEEEEEEEE---EEEEEEEEECSS---CEEEETTSSSCBCSSCCTTTHHHHHHHHHHHHHHHHTTCCCCCEEEEEEC
T ss_pred cCCCEEEEEEcc---ccEEEEEEeCCc---EEEecCCCCceeeecCCCCcHHHHHHHHHHHHHHHhcCCCCCCEEEEEEc
Confidence 389999999999 799999876542 344433211 1 1111 10 0 1 12 23589999999
Q ss_pred CCCCc---cccccchhhHHHHHHHHHHHhCCC--HHHHHHHHHHc--------cC-CchhhhcCCeEEEEeCCCCCCCCC
Q psy11141 162 NFPTA---AGLASSAAGYSCLVFTLAYALGLN--TSEVSHIARQG--------SG-SACRSMFGGFVRWKTLPEGQQSDG 227 (566)
Q Consensus 162 nIP~a---aGLGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~G--------SG-SaarSi~GGfV~w~~~~~G~~~dg 227 (566)
+||.+ +|||||||.++|++.|++++++++ .++|.++|... +| +++.|+|||++.+.. . |.
T Consensus 96 ~iP~~g~k~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~~~~~~~~D~~~~~~Gg~~~~~~---~---~~ 169 (337)
T 2pg9_A 96 KMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSMGDLACIAAEDLVLYQS---F---DR 169 (337)
T ss_dssp CSEETTEECSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCSCSHHHHHHHHTSCEEEEC---C---CH
T ss_pred cCCCCCCCccccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCEEEEec---C---Ch
Confidence 99999 999999999999999999999988 89999999753 23 689999999987653 1 11
Q ss_pred C-----------------CccccccccceeEEEccCCCCCCceEEEEEEECCCCCCCCChHHHhhhccCCchHHHHHhhh
Q psy11141 228 N-----------------GDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRTTLTSTLYEHRVNTI 290 (566)
Q Consensus 228 ~-----------------~~~~~~~~~~s~a~~I~~~~~wp~L~ivilVv~~~~K~vsST~~mr~~v~ts~~~~~~v~~~ 290 (566)
. +| . ...++++.+ ++++++++.+..+ .+|..+++.++.... ++.+.+
T Consensus 170 ~~~~~~~~~~~~~~~l~~~~-~------~~~~~l~~~---~~~~lvl~~~~~~----~~T~~~~~~~~~~~~-~~~~~~- 233 (337)
T 2pg9_A 170 QKVAAWLEEENLATVLERDW-G------FSISQVKPT---LECDFLVGWTKEV----AVSSHMVQQIKQNIN-QNFLTS- 233 (337)
T ss_dssp HHHHHHHHHSCHHHHHHSCC-C------CEEEECCCC---SCCEEEEEECCCC----CCHHHHHHHHGGGCC-HHHHHH-
T ss_pred HHhhhhhcccchhhhccccc-c------cceeeecCC---CCceEEEEECCCc----cchHHHHHHHHHHHH-HHHHHH-
Confidence 0 01 0 135666532 3677666655432 256666655443211 334443
Q ss_pred ccchHHHHHHHHHcCCHHHHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCC--cce
Q psy11141 291 VPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAG--PNA 368 (566)
Q Consensus 291 ~~~~v~~li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAG--PnV 368 (566)
...++..++.||.++|++.|+++|.+++..+++... ....|+..++++ .+++ .| .. +.++||| |++
T Consensus 234 ~~~~~~~~~~aL~~~d~~~lg~~m~~~~~~l~~l~~------~v~~p~l~~l~~---~a~~-~G-a~-ak~sGaGgGg~v 301 (337)
T 2pg9_A 234 SKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLST------DIYTPLLRQLKE---ASQD-LQ-AV-AKSSGAGGGDCG 301 (337)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCT------TTCCHHHHHHHH---TTTT-SS-EE-EEECTTCSSSEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC------cCCCHHHHHHHH---HHHH-CC-CE-EEEeCCCCccEE
Confidence 355778899999999999999998765555554321 023454445443 3333 37 44 7899999 999
Q ss_pred EEeeccC-CHHHHHHHHHhh
Q psy11141 369 CLYVLEN-TVPLLLSTLVQY 387 (566)
Q Consensus 369 ~~l~~~~-~~~~v~~~L~~~ 387 (566)
++|++++ +.+++.++|++.
T Consensus 302 ial~~~~~~~~~~~~~l~~~ 321 (337)
T 2pg9_A 302 IALSFDAQSTKTLKNRWADL 321 (337)
T ss_dssp EEEECSHHHHHHHHHHHHHT
T ss_pred EEEECCHHHHHHHHHHHHHC
Confidence 9999754 466777777663
No 21
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=99.78 E-value=7.7e-19 Score=178.22 Aligned_cols=213 Identities=10% Similarity=0.036 Sum_probs=136.7
Q ss_pred ccceeecCCCceeEEEEEecCCCCccEEEEcCc--cchhhh--------hhhh-c------cCCccEEEEEEcCCCCccc
Q psy11141 106 IEPIEITFQRMHAKTSVALSPDFTEDKLWLNGK--KLAEQE--------KSSR-E------MADWKMHICSENNFPTAAG 168 (566)
Q Consensus 106 SLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~--~~~~~~--------~~l~-~------~~~~~v~I~s~nnIP~aaG 168 (566)
|+.++++ +|++++++..++ +.+.+.+. .++.++ ...+ . +...+++|+++++||.++|
T Consensus 30 sl~~ai~---l~~~v~v~~~~~---~~i~i~~~~~~~~~~~nlv~~a~~~~~~~~~~~~~~g~~~g~~i~i~~~IP~g~G 103 (283)
T 2ww4_A 30 TLFQFLD---YGDTISIELRDD---GDIRLLTPVEGVEHEDNLIVRAARLLMKTAADSGRLPTGSGANISIDKRLPMGGG 103 (283)
T ss_dssp EEEEEEE---EEEEEEEEEESS---SCEEECSCBTTBCGGGSHHHHHHHHHHHHHHHTTCSCTTCEEEEEEECCCC-CTT
T ss_pred EEEEECC---CCcEEEEEECCC---CcEEEEeCCCCCCCcccHHHHHHHHHHHHhhhhcccCCCCceEEEEEeCCCCCCC
Confidence 8999999 999999986542 35667653 122211 0111 2 5556899999999999999
Q ss_pred cccchhhHHHHHHHHHHHhCCC--HHHHHHHHHHccCCchhhhcCCeEEEEeCCCCCCCCCCCccccccccceeEEEccC
Q psy11141 169 LASSAAGYSCLVFTLAYALGLN--TSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIIS 246 (566)
Q Consensus 169 LGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~GSGSaarSi~GGfV~w~~~~~G~~~dg~~~~~~~~~~~s~a~~I~~ 246 (566)
||||||.+||++.|+|++++++ .+||.++|...+++++++++||++. .. |. ++ ..++++
T Consensus 104 LGsSsa~~~a~l~al~~l~~~~l~~~~l~~la~~~e~dv~~~~~gg~~~-~~---g~---g~-----------~~~~l~- 164 (283)
T 2ww4_A 104 LGGGSSNAATVLVALNHLWQCGLSMDELAEMGLTLGADVPVFVRGHAAF-AE---GV---GE-----------ILTPVD- 164 (283)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCTTHHHHHHTBCEE-EE---TT---TT-----------EEEECC-
T ss_pred ccHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCCHHHhhcCCeEE-EE---ec---Cc-----------cceEcC-
Confidence 9999999999999999999988 8999999999999999999999985 44 42 32 245663
Q ss_pred CCCCCceEEEEEEECCCCCCCCChHHHhhhccCCchHHHHHhhhccchHHHHHHHHHcCCHHHHHHHHHhchhhhhhccc
Q psy11141 247 ESYWGSMRVIILVVNDQAKSTSSTDGMQRTTLTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCL 326 (566)
Q Consensus 247 ~~~wp~L~ivilVv~~~~K~vsST~~mr~~v~ts~~~~~~v~~~~~~~v~~li~AL~~~D~e~lgel~~~Dsn~LHa~~~ 326 (566)
.|++.++++.++. .+ ||..+++..+ .+ . +. ....+ .+|.++++ ++ .++..
T Consensus 165 ---~~~~~~vl~~p~~---~~-sT~~~~~~~~-~~-~----~~-~~~~l----~~l~~~~~-------~n---d~~~~-- 214 (283)
T 2ww4_A 165 ---PPEKWYLVAHPGV---SI-PTPVIFKDPE-LP-R----NT-PKRSI----ETLLKCEF-------SN---DCEVI-- 214 (283)
T ss_dssp ---CCCCEEEEECCSC---CC-CHHHHHTCTT-SC-C----CC-CCCCH----HHHHTSCC-------CB---TTHHH--
T ss_pred ---CCCcEEEEEeCCC---CC-chHHHHhccc-cc-c----cc-hHHHH----HHHHhhhh-------cC---chHHH--
Confidence 2566655554432 34 5666654321 11 0 11 11112 23444442 12 23322
Q ss_pred ccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCcceEEeeccCC-HHHHHHHHH
Q psy11141 327 DTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLENT-VPLLLSTLV 385 (566)
Q Consensus 327 ~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPnV~~l~~~~~-~~~v~~~L~ 385 (566)
...+.|+..++++.+ ++. | ++.+|||||+||+++.+++ .+++.+.|.
T Consensus 215 -----~~~~~p~l~~i~~~~---~~~-G---~a~~SGsG~tvf~l~~~~~~a~~~~~~l~ 262 (283)
T 2ww4_A 215 -----ARKRFREVDAVLSWL---LEY-A---PSRLTGTGACVFAEFDTESEARQVLEQAP 262 (283)
T ss_dssp -----HHHHCHHHHHHHHHH---HTT-S---CEEECTTSSCEEEEESSHHHHHHHHHHCC
T ss_pred -----HHhcChHHHHHHHHH---HHc-C---CceECCcccceEEEeCCHHHHHHHHHHhh
Confidence 223456666666544 333 5 4789999999999997542 445555443
No 22
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=99.74 E-value=1.4e-16 Score=162.17 Aligned_cols=253 Identities=11% Similarity=0.026 Sum_probs=160.8
Q ss_pred cc-cCCCccceeecCCCceeEEEEEecCCCCccEEEEcCcc----chhh------h-------hhh-hcc-CCccEEEEE
Q psy11141 100 KS-ELNGIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKK----LAEQ------E-------KSS-REM-ADWKMHICS 159 (566)
Q Consensus 100 ~l-P~ndSLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~~----~~~~------~-------~~l-~~~-~~~~v~I~s 159 (566)
-+ |+.++|.++++ .|++++|+.+++ .+|..+... ...+ . ..+ ..+ ...+++|.+
T Consensus 18 Vv~~G~~Ala~ai~---~~~~v~i~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~i~I 91 (335)
T 3gon_A 18 ILEPGQLALIKDIP---IYMRAEIAFSDS---YRIYSDMFDFAVDLRPNPDYSLIQETIALMGDFLAVRGQNLRPFSLAI 91 (335)
T ss_dssp GGSTTCEEEEEEEE---EEEEEEEEECSS---CEEEETTSSSCBCSSCCTTTHHHHHHHHHHHHHHHHTTCCCCCEEEEE
T ss_pred EEcCCCcEEEEEec---ceEEEEEEECCC---CEEEEeCCCcccccCcCCCcHHHHHHHHHHHHHHHHcCCCCCceEEEE
Confidence 44 79999999999 799999887653 455554321 0000 0 011 122 235799999
Q ss_pred EcCCCCc---cccccchhhHHHHHHHHHHHhCCC--HHHHHHHHHH--------ccC-CchhhhcCCeEEEEeCCCCCCC
Q psy11141 160 ENNFPTA---AGLASSAAGYSCLVFTLAYALGLN--TSEVSHIARQ--------GSG-SACRSMFGGFVRWKTLPEGQQS 225 (566)
Q Consensus 160 ~nnIP~a---aGLGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~--------GSG-SaarSi~GGfV~w~~~~~G~~~ 225 (566)
.+++|.+ +|||||||..+|++.|++++++++ .+++.++|.. ++| |.+.|.|||++.+.. .
T Consensus 92 ~s~lp~~~~~~GLgSSaa~~va~~~al~~~~~~~~~~~~l~~la~~~E~~~~g~~sg~D~a~a~~Gg~i~~~~---~--- 165 (335)
T 3gon_A 92 YGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSMGDLACIAAEDLVLYQS---F--- 165 (335)
T ss_dssp ECCSEETTEECSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCSCSHHHHHHHHTSCEEEEC---C---
T ss_pred EecCCcccCCCCcchHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHhcCCCCCCCcceeecCCeEEEEe---C---
Confidence 9999987 699999999999999999999998 8899999954 344 679999999987664 2
Q ss_pred CCCCccccc-----------cccceeEEEccCCCCCCceEEEEEEECCCCCCCCChHHHhhhccCCchHHHHHhhhccch
Q psy11141 226 DGNGDIGRK-----------QCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRTTLTSTLYEHRVNTIVPSR 294 (566)
Q Consensus 226 dg~~~~~~~-----------~~~~s~a~~I~~~~~wp~L~ivilVv~~~~K~vsST~~mr~~v~ts~~~~~~v~~~~~~~ 294 (566)
+.+ ++... ........++..+ +++++++..+... .+|..+...+..... +..+.. ...+
T Consensus 166 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~----~~t~~~v~~v~~~~~-~~~~~~-~~~~ 235 (335)
T 3gon_A 166 DRQ-KVAAWLEEENLATVLERDWGFSISQVKPT---LECDFLVGWTKEV----AVSSHMVQQIKQNIN-QNFLTS-SKET 235 (335)
T ss_dssp CHH-HHHHHHHHSCHHHHHHSCCCCEEEECCCC---SCCEEEEEECCCC----CCHHHHHHHHGGGCC-HHHHHH-HHHH
T ss_pred Ccc-ccceeecccchhheecccccceeEEcCCc---cccceEEeecCCh----hhHHHHHHHHHHHhH-HHHHHH-HHHH
Confidence 110 00000 0000234555432 3455554443322 356666554433222 222333 4678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCC--cceEEee
Q psy11141 295 CSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAG--PNACLYV 372 (566)
Q Consensus 295 v~~li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAG--PnV~~l~ 372 (566)
+..++.||+++|++.|+++|..++..|+++... ...|+..++++. .+ ..| .++.++||| +.+++|+
T Consensus 236 ~~~~~~aL~~~d~~~lg~lm~~~h~~l~~l~~~------is~p~ld~l~~~---a~-~~g--~~akltGAG~Ggc~ial~ 303 (335)
T 3gon_A 236 VVSLVEALEQGKSEKIIEQVEVASKLLEGLSTD------IYTPLLRQLKEA---SQ-DLQ--AVAKSSGAGGGDCGIALS 303 (335)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCTT------TCCHHHHHHHHT---TT-TSS--EEEEECTTCSSSEEEEEE
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCc------CCCHHHHHHHHH---HH-hCC--cEEEEccccchheEEEEE
Confidence 899999999999999999998777777765432 234555555543 33 235 257888888 6788888
Q ss_pred ccCC-HHHHHHHHHh
Q psy11141 373 LENT-VPLLLSTLVQ 386 (566)
Q Consensus 373 ~~~~-~~~v~~~L~~ 386 (566)
++++ .+++.+++++
T Consensus 304 ~~~~~~~~i~~~~~~ 318 (335)
T 3gon_A 304 FDAQSTKTLKNRWAD 318 (335)
T ss_dssp CSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 6433 4556666555
No 23
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=99.73 E-value=1.5e-16 Score=167.19 Aligned_cols=259 Identities=12% Similarity=0.097 Sum_probs=163.8
Q ss_pred ccc-cCCCccceeecCCCceeEEEEEecCCCCccEEEEcCcc----------ch--hhh-hh-------h-----hccC-
Q psy11141 99 LKS-ELNGIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKK----------LA--EQE-KS-------S-----REMA- 151 (566)
Q Consensus 99 l~l-P~ndSLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~~----------~~--~~~-~~-------l-----~~~~- 151 (566)
... |+.++|+++++ .|++++|+..++ .++...+.. ++ ... .. + ..+.
T Consensus 22 ~~~~~g~~~l~~Ai~---~~~~v~v~~~~~---~~i~s~~~~~~~~~~~~~~~~~~~~~~~yv~~~i~~~~~~~~~~g~~ 95 (365)
T 3k17_A 22 AVVESGHTAILTAVN---RYITLTLEDSER---NELWIPHYENPVSWPIGGELKPDGEHWTFTAEAINIATTFLKSEGIE 95 (365)
T ss_dssp GGGSTTCEEEEEEEE---EEEEEEEEECSS---CEEECTTCSSCBCCCTTSCCCCSCGGGHHHHHHHHHHHHHHHHTTCC
T ss_pred EEecCCCEEEEEEcc---CcEEEEEEECCC---cEEEecCCCcceeeecccCCCCCCChHHHHHHHHHHHHHHHHhcCCC
Confidence 345 89999999999 788888876543 234433211 00 000 00 0 1122
Q ss_pred CccEEEEEEcCCCC----ccccccchhhHHHHHHHHHHHhCCC--HHHHHHHHHH--------ccC-CchhhhcCCeEEE
Q psy11141 152 DWKMHICSENNFPT----AAGLASSAAGYSCLVFTLAYALGLN--TSEVSHIARQ--------GSG-SACRSMFGGFVRW 216 (566)
Q Consensus 152 ~~~v~I~s~nnIP~----aaGLGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~--------GSG-SaarSi~GGfV~w 216 (566)
..+++|+++++||. ++|||||||.++|++.|++++++++ .++|.++|.. ++| +++.|+|||++.+
T Consensus 96 ~~g~~i~i~s~iP~~~g~~~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~~g~~~g~D~~~~~~Gg~~~~ 175 (365)
T 3k17_A 96 LTPVKMVIETELIDQSGAKYGLGSSAAATVAVINALMTKFYPEISMLKKFKLAALSHLVVQGNGSCGDIASCMYGGWIAY 175 (365)
T ss_dssp CCCEEEEEEESSBCTTSCBCSSCHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSSCCSHHHHHHHHCSEEEE
T ss_pred CCCEEEEEEcCCCCCCCCCCcccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCcccHHHHhcCCEEEE
Confidence 35799999999996 6799999999999999999999988 8899999954 333 6899999999887
Q ss_pred EeCCCCCCCCCCCccccc------------cccceeEEEccCCCCCCceEEEEEEECCCCCCCCChHHHhhhccC----C
Q psy11141 217 KTLPEGQQSDGNGDIGRK------------QCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRTTLT----S 280 (566)
Q Consensus 217 ~~~~~G~~~dg~~~~~~~------------~~~~s~a~~I~~~~~wp~L~ivilVv~~~~K~vsST~~mr~~v~t----s 280 (566)
.+ + +. .|+... +-.....++++.+ ++ +++++.+.. +. +|..+.+.+.. .
T Consensus 176 ~~---~---~~-~~~~~~~~~~~l~~l~~~~w~~~~~~~l~~~---~~-~lll~~t~~---~~-sT~~~~~~v~~~~~~~ 240 (365)
T 3k17_A 176 TT---F---DQ-EWVKHRLAYKSLEWFMKEPWPMLQIETLEEP---VP-TFSVGWTGT---PV-STGKLVSQIHAFKQED 240 (365)
T ss_dssp EC---C---CH-HHHHHHHTTSCHHHHHHSCCTTCEEEEECCC---SS-EEEEEECSC---CC-CHHHHHHHHHHHHHHC
T ss_pred ec---C---CH-HHhhhhcccchhhhhhccCCCCcceeeccCC---cc-cEEEEECCC---cc-chHHHHHHHHHHHHhC
Confidence 64 2 10 000000 0000235566431 34 544444332 23 56555543321 1
Q ss_pred c-hHHHHHhhhccchHHHHHHHHHcCCHHHHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEE
Q psy11141 281 T-LYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVA 359 (566)
Q Consensus 281 ~-~~~~~v~~~~~~~v~~li~AL~~~D~e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a 359 (566)
+ .+++.+.. ...++..+++||+++|++.|+++|..+++.|+.... .+......|+..++++.+++. | .. +
T Consensus 241 ~~~~~~~~~~-~~~~~~~~~~aL~~gd~~~lg~lm~~~~~~l~~l~v--~~~~~is~p~ld~l~~~a~~~----G-a~-a 311 (365)
T 3k17_A 241 SKNYQHFLTR-NNEIMKQIIQAFHTKDEELLYSSIKENRRILQELGT--KAGVNIETSLLKELADSAENM----G-GA-G 311 (365)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH--HHTCCCSCHHHHHHHHHHHHT----T-SE-E
T ss_pred hHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhh--hcCCcccCHHHHHHHHHHHhc----C-CE-E
Confidence 1 24445554 445679999999999999999998766666665322 111222456666666555443 6 33 7
Q ss_pred EEeCCC--cceEEeeccC-CHHHHHHHHHhh
Q psy11141 360 YTFDAG--PNACLYVLEN-TVPLLLSTLVQY 387 (566)
Q Consensus 360 ~tsGAG--PnV~~l~~~~-~~~~v~~~L~~~ 387 (566)
.++||| +++++|++++ ..+++.+++++.
T Consensus 312 k~sGAGgGg~vial~~~~~~~~~l~~~l~~~ 342 (365)
T 3k17_A 312 KSSGSGGGDCGIAFSKTKELAEKLVNEWEKL 342 (365)
T ss_dssp EECTTCSSSEEEEEESSHHHHHHHHHHHHHT
T ss_pred EecCCCCCCEEEEEECCHHHHHHHHHHHHHC
Confidence 899998 9999999764 367777777764
No 24
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=2.7e-17 Score=172.13 Aligned_cols=247 Identities=16% Similarity=0.166 Sum_probs=140.8
Q ss_pred ccceeecCCCceeEEEEEecCCCCccEEEEc--Cc----cch-------hhhhh--------h-hcc--CCccEEEEEEc
Q psy11141 106 IEPIEITFQRMHAKTSVALSPDFTEDKLWLN--GK----KLA-------EQEKS--------S-REM--ADWKMHICSEN 161 (566)
Q Consensus 106 SLSltLd~~~lyt~TtV~~s~~~~~d~i~ln--G~----~~~-------~~~~~--------l-~~~--~~~~v~I~s~n 161 (566)
+|.++++ +|+.++++..++ +.+.|. .. .++ ....+ + ..+ ...+++|.+++
T Consensus 32 vl~~AId---~~~~v~i~~~~d---~~i~i~s~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~g~~i~i~~ 105 (357)
T 3k85_A 32 ILNATIN---LYAYCTIEETNS---GRIEINAYDAQCCKSYLSMSQLEIDGEASLIKGVYNRIIRDYRLEPKSFKITTYN 105 (357)
T ss_dssp EEEEEEE---EEEEEEEEECSS---SEEEEEETTTTEEEEEECCSSCCCCSSSHHHHHHHHHHHHHTTCCCCCEEEEEEE
T ss_pred EEEEEEe---CcEEEEEEECCC---CeEEEEECCCCceEEEeccccccccchHHHHHHHHHHHHHhcCCCCCCEEEEEec
Confidence 8999999 798888876543 334441 11 011 00011 1 122 14689999999
Q ss_pred CCCCccccccchhhHHHHHHHHHHHhCCC--HHHHHHHHHHcc--------C--CchhhhcCCeEEEEeCCCCCCCCCCC
Q psy11141 162 NFPTAAGLASSAAGYSCLVFTLAYALGLN--TSEVSHIARQGS--------G--SACRSMFGGFVRWKTLPEGQQSDGNG 229 (566)
Q Consensus 162 nIP~aaGLGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~GS--------G--SaarSi~GGfV~w~~~~~G~~~dg~~ 229 (566)
+||.++|||||||.++|++.|++++++++ .++|.++|...+ | +.+.|+|||++.... . ++..
T Consensus 106 ~iP~g~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~Gg~~~~~~----~--~~~~ 179 (357)
T 3k85_A 106 DAPAGSGLGTSSTMVVCILKAFIEWLSLPLGDYETSRLAYEIERKDLGLSGGKQDQYAAAFGGFNYMEF----L--QNDL 179 (357)
T ss_dssp SSCSSSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHCSEEEEEE----E--TTTE
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHccCCCcHHHHHHHHhCCceEEEE----e--CCCc
Confidence 99999999999999999999999999988 899999997553 4 567788999986432 1 1211
Q ss_pred ccccccccceeEEEccCCCCCC--ceEEEEEEECCCCCCCCChHHHhhhccCCc----hHHHHHhhhccchHHHHHHHHH
Q psy11141 230 DIGRKQCELSNAEQIISESYWG--SMRVIILVVNDQAKSTSSTDGMQRTTLTST----LYEHRVNTIVPSRCSGMEEALR 303 (566)
Q Consensus 230 ~~~~~~~~~s~a~~I~~~~~wp--~L~ivilVv~~~~K~vsST~~mr~~v~ts~----~~~~~v~~~~~~~v~~li~AL~ 303 (566)
....+++.+ .|. ++...++++ ++.++.++++.+++.++... .+...+.. ..+++..+++||+
T Consensus 180 ---------~~~~~l~~~-~~~~~~l~~~lvi~-~t~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~aL~ 247 (357)
T 3k85_A 180 ---------VIVNPLKMK-RWIVDELESSMVLY-FTGRSRSSAAIINEQKKNTSEGNQTAIEAMHK-IKQSAIDTKLALL 247 (357)
T ss_dssp ---------EEEEEECCC-HHHHHHHHHTEEEE-CC---------------------CCTTHHHHH-HHHHHHHHHHHHT
T ss_pred ---------eeEEEEecC-hhhhhhcCceEEEE-ECCCcccHHHHHHHHHHHhhcCcHHHHHHHHH-HHHHHHHHHHHHH
Confidence 345666531 111 011123333 33444445555544322110 11122333 3357888999999
Q ss_pred cCCHHHHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCCcc--eEEeeccCCHHHHH
Q psy11141 304 ARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPN--ACLYVLENTVPLLL 381 (566)
Q Consensus 304 ~~D~e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAGPn--V~~l~~~~~~~~v~ 381 (566)
++|++.|+++|.+ ..|...... + ..-.|+...+++ .+++ .| ..++.++||||+ +++++++++.+++.
T Consensus 248 ~~d~~~lg~lm~~---~~~~l~~~~-~--~vs~p~ld~l~~---~a~~-~G-a~GaklsGaG~gG~vial~~~~~~~~~~ 316 (357)
T 3k85_A 248 KGDVGEFARILGE---GWENKKKMA-G--AITNPMIQEAFD---VATG-AG-AMAGKVSGAGGGGFIMFVVEPTRKEEVV 316 (357)
T ss_dssp TTCHHHHHHHHHH---HHHHTTC--------------CCSC---TTTT-SC-CSEEEECCCC---CEEEECCHHHHHHHH
T ss_pred cCCHHHHHHHHHH---HHHHHHhcC-C--CCCCHHHHHHHH---HHHh-cC-CeEeEecccCCCCEEEEEecHHHHHHHH
Confidence 9999999999864 233332210 0 001233333332 2332 37 457899999999 88888877778888
Q ss_pred HHHHhh
Q psy11141 382 STLVQY 387 (566)
Q Consensus 382 ~~L~~~ 387 (566)
++|++.
T Consensus 317 ~~l~~~ 322 (357)
T 3k85_A 317 RALNNL 322 (357)
T ss_dssp HHHHTS
T ss_pred HHHHHC
Confidence 888764
No 25
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=99.72 E-value=1.8e-16 Score=167.01 Aligned_cols=196 Identities=16% Similarity=0.184 Sum_probs=124.3
Q ss_pred CccEEEEEEcCCCCccccccchhhHHHHHHHHHHHhCC-----C---------HHHHHHH---HHH------ccC---Cc
Q psy11141 152 DWKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGL-----N---------TSEVSHI---ARQ------GSG---SA 205 (566)
Q Consensus 152 ~~~v~I~s~nnIP~aaGLGSSAA~aAAla~Aln~L~gL-----~---------~eeLs~i---Ar~------GSG---Sa 205 (566)
..+++|+++++||.++|||||||.+||++.|+++++++ + .+++.+| |.. |.+ +.
T Consensus 126 ~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~~~~~~l~~~~~~~~~~~l~~l~~~A~~~E~~~~G~~sG~D~ 205 (395)
T 1kvk_A 126 LPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGVDN 205 (395)
T ss_dssp CCCEEEEEEESSCTTSSSCHHHHHHHHHHHHHHHHTTSSCCGGGGCCSEECCCHHHHHHHHHHHHHHHHHHHSSCCSHHH
T ss_pred CCCEEEEEEecCCCCCCccHHHHHHHHHHHHHHHHhCcccccccccccccccchhhHHHHHHHHHHhhheEecCCCCcch
Confidence 45899999999999999999999999999999999998 3 3344444 422 433 57
Q ss_pred hhhhcCCeEEEEeCCCCCCCCCCCccccccccceeEEEccCCCCCCceEEEEEEECCCCCCCCChHHH----hhhccCCc
Q psy11141 206 CRSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTDGM----QRTTLTST 281 (566)
Q Consensus 206 arSi~GGfV~w~~~~~G~~~dg~~~~~~~~~~~s~a~~I~~~~~wp~L~ivilVv~~~~K~vsST~~m----r~~v~ts~ 281 (566)
+.|+|||++.+.. | . .++++. .++++++++.+..+ . +|..+ +......+
T Consensus 206 ~~~~~Gg~~~~~~---~------~-----------~~~l~~---~~~~~~vl~~~~~~---~-~T~~~~~~~~~~~~~~~ 258 (395)
T 1kvk_A 206 SVSTWGGALRYQQ---G------K-----------MSSLKR---LPALQILLTNTKVP---R-STKALVAGVRSRLIKFP 258 (395)
T ss_dssp HHHHHCSEEEESS---S------C-----------EEECSC---CCCEEEEEEECCCC---C-CHHHHHHHHHHHHHHSH
T ss_pred HHhhhcceEEEcC---C------C-----------ceeccC---CCCcEEEEEECCCC---C-chHHHHHHHHHHHHHCH
Confidence 8899999987632 2 2 456642 25676665554332 3 45443 21111111
Q ss_pred -hHHHHHhhhccchHHHHHHHH-------HcCCHHHHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhh
Q psy11141 282 -LYEHRVNTIVPSRCSGMEEAL-------RARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVV 353 (566)
Q Consensus 282 -~~~~~v~~~~~~~v~~li~AL-------~~~D~e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~ 353 (566)
.++...+. ....+.++..++ .++|++.|+++|..+++.||+ +. ...|+..++++.+++ .
T Consensus 259 ~~~~~~~~~-~~~~~~~~~~~l~~~~~al~~~d~~~lg~lm~~~~~~l~~-~~-------~~~p~l~~l~~~a~~---~- 325 (395)
T 1kvk_A 259 EIMAPLLTS-IDAISLECERVLGEMAAAPVPEQYLVLEELMDMNQHHLNA-LG-------VGHASLDQLCQVTAA---H- 325 (395)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHH-HT-------CCCHHHHHHHHHHHH---T-
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHH-cC-------CCCHHHHHHHHHHHH---c-
Confidence 12222222 122233444444 448999999999877777775 22 224555555554443 3
Q ss_pred CCceEEEEeCCC--cceEEeeccCCHHHHHHHHHhhCC
Q psy11141 354 GETKVAYTFDAG--PNACLYVLENTVPLLLSTLVQYFP 389 (566)
Q Consensus 354 G~~~~a~tsGAG--PnV~~l~~~~~~~~v~~~L~~~f~ 389 (566)
| . ++.++||| |+++++++++..+++.+.+.+.+.
T Consensus 326 G-a-ga~~sGaG~Gg~v~~l~~~~~~~~~~~~~~~~~~ 361 (395)
T 1kvk_A 326 G-L-HSKLTGAGGGGCGITLLKPGLERAKVEAAKQALT 361 (395)
T ss_dssp T-C-EEEECSSCSSSEEEEEECTTCCHHHHHHHHHHHH
T ss_pred C-C-ceeeccCCCCCEEEEEecCCCCHHHHHHHHHHHH
Confidence 7 4 78999998 999999987765666666655443
No 26
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=99.70 E-value=1.5e-15 Score=164.81 Aligned_cols=251 Identities=15% Similarity=0.141 Sum_probs=157.1
Q ss_pred ccCCCccceeecCCCceeEEEEEecCCCCccEEEEcCc----------cch--hhh----hh--------hh-ccC--Cc
Q psy11141 101 SELNGIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGK----------KLA--EQE----KS--------SR-EMA--DW 153 (566)
Q Consensus 101 lP~ndSLSltLd~~~lyt~TtV~~s~~~~~d~i~lnG~----------~~~--~~~----~~--------l~-~~~--~~ 153 (566)
.|+.++|+++++ +|++++|+..++ ...++...+. .++ ..+ .. +. .+. ..
T Consensus 73 ~~g~~vl~~AI~---~~~~v~v~~~~~-~~i~i~~~~~~~~~~~~~~~~l~~~~~~~~~~n~v~~a~~~v~~~~~~~~~~ 148 (478)
T 2a2c_A 73 YCGYSVLPMAVE---QDVLIAVEPVKT-YALQLANTNPLYPDFSTSANNIQIDKTKPLWHNYFLCGLKGIQEHFGLSNLT 148 (478)
T ss_dssp GGTCCBEEEEEE---EEEEEEEEECSS-SCEEEEESSTTSCCEEECCCCC--CCSSCCHHHHHHHHHHHHHHHTTCCSCC
T ss_pred eCCCeEEEEEec---ccEEEEEEECCC-CeEEEEECCCCCcceeccchhcccCCCcccHHHHHHHHHHHHHHHHhccCCC
Confidence 478899999999 899998886442 1122222211 010 000 00 11 222 46
Q ss_pred cEEEEEEcCCCCccccccchhhHHHHHHHHHHHhCCC--HHHHHHHHHHccC---------CchhhhcC---CeEEEEeC
Q psy11141 154 KMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLN--TSEVSHIARQGSG---------SACRSMFG---GFVRWKTL 219 (566)
Q Consensus 154 ~v~I~s~nnIP~aaGLGSSAA~aAAla~Aln~L~gL~--~eeLs~iAr~GSG---------SaarSi~G---GfV~w~~~ 219 (566)
+++|.++++||.++|||||||.++|++.|++++++++ +++|.++|...+. +.+.|+|| |++...
T Consensus 149 g~~i~i~s~IP~g~GLgSSAA~~va~~~al~~~~~~~ls~~~l~~la~~~E~~~g~~~g~~D~~a~~~G~~g~~~~i~-- 226 (478)
T 2a2c_A 149 GMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEICAKSERYIGTEGGGMDQSISFLAEEGTAKLIE-- 226 (478)
T ss_dssp CEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGTCCCCSHHHHHHHHCBTTBEEEEE--
T ss_pred ceEEEEECCCCCCCCchHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcCCCCccHHHHHHHhccCCcEEEEE--
Confidence 8999999999999999999999999999999999987 8999999976531 44668998 665443
Q ss_pred CCCCCCCCCCccccccccceeEEEccCCCCCCceEEEEEEECCCCCCCCCh---------HHHhhhcc------------
Q psy11141 220 PEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSST---------DGMQRTTL------------ 278 (566)
Q Consensus 220 ~~G~~~dg~~~~~~~~~~~s~a~~I~~~~~wp~L~ivilVv~~~~K~vsST---------~~mr~~v~------------ 278 (566)
.. + ....+++.+ +++.++++-+..+..+..++ +..++.++
T Consensus 227 --f~---~-----------~~~~~~~~~---~~~~~vi~~s~~~~~t~~t~~yn~r~~e~~~A~~~L~~~~~~~~~~~~~ 287 (478)
T 2a2c_A 227 --FS---P-----------LRATDVKLP---SGAVFVIANSCVEMNKAATSHFNIRVMECRLAAKLLAKYKSLQWDKVLR 287 (478)
T ss_dssp --TT---T-----------TEEEEECCC---TTEEEEEEECCCCCCGGGSSHHHHHHHHHHHHHHHHHHHTTCCTTTCCC
T ss_pred --cC---C-----------CceEEecCC---CCcEEEEEeCCCcccccccchhHHHHHHHHHHHHHHHhhhcccccccch
Confidence 21 1 134566421 35655554332222111110 01100100
Q ss_pred ------------------------CC---------------------------------chHH---HHHhhhccchHHHH
Q psy11141 279 ------------------------TS---------------------------------TLYE---HRVNTIVPSRCSGM 298 (566)
Q Consensus 279 ------------------------ts---------------------------------~~~~---~~v~~~~~~~v~~l 298 (566)
.. ..++ +.+. ...++..+
T Consensus 288 l~d~~~~~~~~~~~~v~~v~~~~~~~~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~ra~h~~~--e~~rv~~~ 365 (478)
T 2a2c_A 288 LEEVQAKLGISLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQILSPNTQDVLIFKLYQRAKHVYS--EAARVLQF 365 (478)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHSCSSCBCHHHHHHHHTCCHHHHHHHTSCGGGTTCCCBCHHHHHHHHHH--HHHHHHHH
T ss_pred HHhhhhhhcccHHHHHHHHHHhcccccccHHHHHHHhCccHHHHHhhccccccccchhHHHHHHHHHHHH--HHHHHHHH
Confidence 00 0011 1222 24568889
Q ss_pred HHHHHc---CCHHHHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCCC--cceEEeec
Q psy11141 299 EEALRA---RDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAG--PNACLYVL 373 (566)
Q Consensus 299 i~AL~~---~D~e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGAG--PnV~~l~~ 373 (566)
+.||++ +|++.|+++|. +-|+.+++.+ ....|+..++++.+.+ . | ..++.++||| +++++|++
T Consensus 366 ~~aL~~~~~~d~~~lg~lm~----~sh~slr~l~---~vs~peld~l~~~a~~---~-G-a~GarltGAG~GG~viaLv~ 433 (478)
T 2a2c_A 366 KKICEEAPENMVQLLGELMN----QSHMSCRDMY---ECSCPELDQLVDICRK---F-G-AQGSRLTGAGWGGCTVSMVP 433 (478)
T ss_dssp HHHHHHCCTTHHHHHHHHHH----HHHHHHHHTS---CCCCHHHHHHHHHHHH---T-T-CSEEEECTTCSSSEEEEEEE
T ss_pred HHHHHhccccHHHHHHHHHH----HHHHHHHhcc---cCCCHHHHHHHHHHHh---C-C-CcEEEeccCCCccEEEEEEc
Confidence 999999 99999999984 4566666432 1225666666655544 2 6 4578999996 99999998
Q ss_pred cCCHHHHHHHHHhhCCC
Q psy11141 374 ENTVPLLLSTLVQYFPP 390 (566)
Q Consensus 374 ~~~~~~v~~~L~~~f~~ 390 (566)
++..+++.+.|++.|..
T Consensus 434 ~~~~~~~~~~l~~~y~~ 450 (478)
T 2a2c_A 434 ADKLPSFLANVHKAYYQ 450 (478)
T ss_dssp GGGHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 87788899999876543
No 27
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=99.34 E-value=7.5e-13 Score=141.21 Aligned_cols=96 Identities=36% Similarity=0.650 Sum_probs=75.3
Q ss_pred cccCCCCCch--------hhHHHHHHcCCCChHHHHHHHhhccccccccccCCeEEeecCCCCCCCCCCCCccccccCCc
Q psy11141 446 HLLNEAGAPK--------HLMFTLAYALGLNTSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSEGNGDIGRKQFELS 517 (566)
Q Consensus 446 ~Lld~~Glp~--------ala~~~~~~~~~~~~~~s~~ar~gsgsa~rs~~g~~~~w~~~~~g~~~~~~~~~~~~~~~d~ 517 (566)
.++.+.||-. ..+++.++++ .++++++||+||||+|||+|||||.|.+ |...++ +|+
T Consensus 131 ~iP~aaGLgSSaA~~aA~~~a~n~l~~l---~~el~~lA~~~sGs~~~s~~GG~v~w~~---~~~~d~---------~ds 195 (414)
T 3f0n_A 131 NFPTAAGLASSAAGYACLAYTLAQVYGV---EGDLSEVARRGSGSACRSLYGGFVEWQM---GEQADG---------KDS 195 (414)
T ss_dssp CCCGGGCCCHHHHHHHHHHHHHHHHHTC---CSCCHHHHHHHCGGGGGGGSSSEEEECC---CSCTTC---------TTC
T ss_pred CCCCCcCcchhHHHHHHHHHHHHHHhCC---hHHHHHHHHHhCCCcchHhhCCEEEEEe---ccCCCC---------Cce
Confidence 4555667663 2244455665 4789999999999999999999999999 654343 368
Q ss_pred eeEecCCCCCccceeeEEEEecCCCCccc--------ccchhhHhhc
Q psy11141 518 NAEQIISESYWGSMRVIILVHLEYVPRVS--------NDTTILFKKL 556 (566)
Q Consensus 518 ~a~~~~~~~~~~~~~~~i~v~~~~~k~vs--------~~~~~~~~~~ 556 (566)
++++++++.||++++++|++++.++|.|| .+||++|+.+
T Consensus 196 ~a~~i~~~~~wp~L~ivvlv~~~~~K~vsST~~mr~~l~ts~~~~~~ 242 (414)
T 3f0n_A 196 IARQIAPEWHWPQLRILILVVSADKKQTGSTVGMQTSVETSTLLKFR 242 (414)
T ss_dssp CEEEEECTTSCTTEEEEEEEESCCC-CCCHHHHHHHHHHHCHHHHHH
T ss_pred EEEEcccccCCCCceEEEEEeCccccCCCchHHHHhhcccCccHHHH
Confidence 99999888899999999999999999886 5688888763
No 28
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=99.12 E-value=1.3e-10 Score=120.73 Aligned_cols=80 Identities=19% Similarity=0.348 Sum_probs=65.6
Q ss_pred CcccCCCCCch--------h----hHHHHHHcCCC-ChHHHHHHHhhccccccccccCCeEEeecCCCCCCCCCCCCccc
Q psy11141 445 NHLLNEAGAPK--------H----LMFTLAYALGL-NTSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSEGNGDIGR 511 (566)
Q Consensus 445 ~~Lld~~Glp~--------a----la~~~~~~~~~-~~~~~s~~ar~gsgsa~rs~~g~~~~w~~~~~g~~~~~~~~~~~ 511 (566)
..++.+.||-. . .+++.++++++ +.++++++||+||||+|||+|||||.|.. |
T Consensus 99 n~IP~aaGLgSSAA~~aA~~~~~~~aln~l~gl~l~s~~eL~~lA~~gsGsaa~si~GG~v~~~~---g----------- 164 (323)
T 3lto_A 99 NNFPHSSGLASSASSFAALTKCASIALSELTQKPLPSIDEQAQLSRLGSGSSCRSFYAPWALWTG---D----------- 164 (323)
T ss_dssp ESSCTTTTCCCHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHTTCGGGGGGGSCSEEEEET---T-----------
T ss_pred eCCCCccCcchhHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCcchhhhCCEEEEec---C-----------
Confidence 44666677762 2 34445689999 99999999999999999999999999988 3
Q ss_pred cccCCceeEecCCCCCccceeeEEEEecCCCCccc
Q psy11141 512 KQFELSNAEQIISESYWGSMRVIILVHLEYVPRVS 546 (566)
Q Consensus 512 ~~~~d~~a~~~~~~~~~~~~~~~i~v~~~~~k~vs 546 (566)
+++++. .+|++++++++++++.+|.||
T Consensus 165 ------~~~~l~--~~~~~l~~~v~vi~~~~~~vs 191 (323)
T 3lto_A 165 ------KVSAID--LPYKDLLHQVIVISSQEKEIP 191 (323)
T ss_dssp ------EEEECC--CSCCSCEEEEEECCCCTTCCC
T ss_pred ------cEEEcc--CCCCCCeEEEEEECCCCCCCC
Confidence 466763 569999999999999998887
No 29
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Probab=99.04 E-value=1.8e-09 Score=118.54 Aligned_cols=114 Identities=18% Similarity=0.153 Sum_probs=77.7
Q ss_pred cchHHHHHHHHHcC-------CHHHHHHHHHhchhhhhhcccccCCCceeccccHHHHHHHHHHHHHhhCCceEEEEeCC
Q psy11141 292 PSRCSGMEEALRAR-------DFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDA 364 (566)
Q Consensus 292 ~~~v~~li~AL~~~-------D~e~lgel~~~Dsn~LHa~~~~~~P~i~yl~p~s~~Ii~~v~~l~~~~G~~~~a~tsGA 364 (566)
..|+..+++||+++ |++.||++|. +-|..+++.+ .-=.|+...+++.+++ .| ..++.++||
T Consensus 393 ~~Rv~~~~~al~~~~~~~~~~d~~~lg~lm~----~sH~slr~~~---~vS~peld~lv~~a~~----~G-a~GarlTGa 460 (520)
T 3v2u_C 393 SLRVLKALKMMTSATFHTDEDFFTDFGRLMN----ESQASCDKLY---ECSCIETNQICSIALA----NG-SFGSRLTGA 460 (520)
T ss_dssp HHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH----HHHHHHHHTS---CCCCHHHHHHHHHHHH----TT-CSEEEECSS
T ss_pred HHHHHHHHHHHHcCCcccchhHHHHHHHHHH----HHHHHHHHhc---CCCcHHHHHHHHHHHh----CC-CCEEEEecC
Confidence 45788889999997 5999999984 5677777532 0113556666665544 26 567899999
Q ss_pred C--cceEEee---ccCCHHHHHHHHHhhCCCCCCCCCccccCcccccCCCCCCCCCCCCCCCCCccEEEEccCCCCcEEc
Q psy11141 365 G--PNACLYV---LENTVPLLLSTLVQYFPPSSGISAPYIRGLEYLNILPPVQLPSFTPQPAGLLQYLISTKIGSGPKIL 439 (566)
Q Consensus 365 G--PnV~~l~---~~~~~~~v~~~L~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~vG~Gp~~~ 439 (566)
| +.+++|+ +++..+++.+.|.+.|.... +..+. ..+.=..+++|++|.|..++
T Consensus 461 G~GGc~iaLv~~~~~~~~~~~~~~l~~~y~~~~------~~~~~----------------~~~~~~~~~~~~p~~GA~i~ 518 (520)
T 3v2u_C 461 GWGGCTIHLVPSGANGNVEQVRKALIEKFYNVR------YPDLT----------------DEELKDAIIVSKPALGTCLY 518 (520)
T ss_dssp CSSSEEEEEEEESTTCSHHHHHHHHHHHTHHHH------CTTCC----------------HHHHHHHEEECCCCCCSEEE
T ss_pred CCCceEEEEEcCCCHHHHHHHHHHHHHHHHhcc------CCccc----------------cccCCCeEEEecCCCceEEe
Confidence 9 9999999 77889999999987654321 00000 00011358999999999875
No 30
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=98.80 E-value=7.3e-09 Score=110.63 Aligned_cols=90 Identities=42% Similarity=0.661 Sum_probs=71.5
Q ss_pred CcccCCCCCch--------hhHHHHHHcCCCChHHHHHHHhhccccccccccCCeEEeecCCCCCCCCCCCCccccccCC
Q psy11141 445 NHLLNEAGAPK--------HLMFTLAYALGLNTSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSEGNGDIGRKQFEL 516 (566)
Q Consensus 445 ~~Lld~~Glp~--------ala~~~~~~~~~~~~~~s~~ar~gsgsa~rs~~g~~~~w~~~~~g~~~~~~~~~~~~~~~d 516 (566)
..++-..||-. ..+++.+++++++.++++++||+|+||+|||+||||+.|.. |...++. +
T Consensus 130 ~~IP~~aGLGSSAA~aaA~l~Aln~l~gl~Ls~~eLa~lA~~g~Gs~~~sl~GG~v~~~~---G~~~~~~---------~ 197 (416)
T 1fi4_A 130 NNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEISRIARKGSGSACRSLFGGYVAWEM---GKAEDGH---------D 197 (416)
T ss_dssp ECCCTTSCCCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHGGGGGGGSSSEEEEEC---CSCTTCT---------T
T ss_pred cCCcCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhccCCchheEeeCCcEEEec---CCcCCCC---------C
Confidence 34666677753 23555678899999999999999999999999999999987 5422222 5
Q ss_pred ceeEecCCCCCccceeeEEEEecCCCCccc
Q psy11141 517 SNAEQIISESYWGSMRVIILVHLEYVPRVS 546 (566)
Q Consensus 517 ~~a~~~~~~~~~~~~~~~i~v~~~~~k~vs 546 (566)
++++++....+|++++++|++++.+.|.+|
T Consensus 198 ~~~~~l~~~~~~p~l~~vvlv~~~~~~~~s 227 (416)
T 1fi4_A 198 SMAVQIADSSDWPQMKACVLVVSDIKKDVS 227 (416)
T ss_dssp CEEEEEECGGGSTTEEEEEEEECCCSCCCC
T ss_pred ceeEEecCccCCcccEEEEEEECCCCCCcC
Confidence 688898776789999999999988877775
No 31
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=98.76 E-value=9.7e-09 Score=106.51 Aligned_cols=76 Identities=36% Similarity=0.566 Sum_probs=63.1
Q ss_pred hHHHHHHcCCCChHHHHHHHhhccccccccccCCeEEeecCCCCCCCCCCCCccccccCCceeEecCCCCCccceeeEEE
Q psy11141 457 LMFTLAYALGLNTSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSEGNGDIGRKQFELSNAEQIISESYWGSMRVIIL 536 (566)
Q Consensus 457 la~~~~~~~~~~~~~~s~~ar~gsgsa~rs~~g~~~~w~~~~~g~~~~~~~~~~~~~~~d~~a~~~~~~~~~~~~~~~i~ 536 (566)
.+++.+++++++.+++.++||+|||++|||+||||+.|.. |. ++ +++++++++++.+|++++++|+
T Consensus 121 ~a~~~l~~~~l~~~el~~la~~~~g~~~~~~~GG~~~~~~---g~--~~---------~~~~~~~l~~~~~~~~l~~vv~ 186 (332)
T 3qt5_A 121 AACNEALSLNLSDTDLSRLARRGSGSASRSIFGGFAEWEK---GH--DD---------LTSYAHGINSNGWEKDLSMIFV 186 (332)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHCGGGGGGGSCSEEEEEC---CS--ST---------TTCEEEEECCTTGGGGEEEEEE
T ss_pred HHHHHHhCCCCCHHHHHHHHHHhcCCchhhhcCCeEEEec---CC--CC---------ccceeeecccccCCCCcEEEEE
Confidence 3555778999999999999999999999999999999998 43 11 2578999976678899999999
Q ss_pred EecCCCCccc
Q psy11141 537 VHLEYVPRVS 546 (566)
Q Consensus 537 v~~~~~k~vs 546 (566)
+.+.+.|.+|
T Consensus 187 vp~~~~~~~s 196 (332)
T 3qt5_A 187 VINNQSKKVS 196 (332)
T ss_dssp CCCCCCCC--
T ss_pred EEcCCCCCCc
Confidence 9998888775
No 32
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Probab=98.74 E-value=1.3e-08 Score=107.29 Aligned_cols=87 Identities=37% Similarity=0.605 Sum_probs=66.5
Q ss_pred CcccCCCCCchhh--------HHHHHHcCCCChHHHHHHHhhccccccccccCCeEEeecCCCCCCCCCCCCccccccCC
Q psy11141 445 NHLLNEAGAPKHL--------MFTLAYALGLNTSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSEGNGDIGRKQFEL 516 (566)
Q Consensus 445 ~~Lld~~Glp~al--------a~~~~~~~~~~~~~~s~~ar~gsgsa~rs~~g~~~~w~~~~~g~~~~~~~~~~~~~~~d 516 (566)
..++-+.||-... +++.+++++ ++++++||+|+||+|||+||||+.|.. |...++. +
T Consensus 104 ~~IP~aaGLGSSAA~aaA~l~Aln~l~gl~---~eL~~lA~~g~Gsva~s~~GG~v~~~~---g~~~~~~---------~ 168 (380)
T 2hke_A 104 NNFPTAAGMASSASGYCAMSAALIRAFKST---TNVSMLARLGSGSACRSAFGGFVIWNK---GEKPDGS---------D 168 (380)
T ss_dssp ECSCTTSCCCHHHHHHHHHHHHHHHHHTCS---SCHHHHHHHHCGGGGGGGSSSEEEEEC---CSCTTST---------T
T ss_pred ccCCCccCcchHHHHHHHHHHHHHHHcCCH---HHHHHHHhhcCcceeeehhCCeEEEec---CCCCCCC---------c
Confidence 4566677875322 334556655 899999999999999999999999998 5322222 4
Q ss_pred ceeEecCCCCCccceeeEEEEecCCCCccc
Q psy11141 517 SNAEQIISESYWGSMRVIILVHLEYVPRVS 546 (566)
Q Consensus 517 ~~a~~~~~~~~~~~~~~~i~v~~~~~k~vs 546 (566)
++++++..+.+|++++++|++++.+++.+|
T Consensus 169 ~~~~~l~~~~~~p~l~~~vlv~~~~~~~~s 198 (380)
T 2hke_A 169 CVATQFVDETHWPEIQVMCAVLKGAQKDVS 198 (380)
T ss_dssp CEEEEEECTTSCTTEEEEEEECCCCSCCCC
T ss_pred ceEEeccCcccCCcceEEEEEecCCCCCCC
Confidence 689999877789999999999998777765
No 33
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Probab=97.63 E-value=0.0001 Score=74.87 Aligned_cols=89 Identities=21% Similarity=0.259 Sum_probs=63.7
Q ss_pred CCcEEcCCCCCCcccCCCCCch--------hhHHHHHHcCCCChHHHHHHHhhccccccccccCCeEEeecCCCCCCCCC
Q psy11141 434 SGPKILDDIPNNHLLNEAGAPK--------HLMFTLAYALGLNTSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSEG 505 (566)
Q Consensus 434 ~Gp~~~~~~~~~~Lld~~Glp~--------ala~~~~~~~~~~~~~~s~~ar~gsgsa~rs~~g~~~~w~~~~~g~~~~~ 505 (566)
.|.++... ..++-..||-. ..+++.+++++++.+++.++|++|+||+|+++|||++.|.. +|
T Consensus 91 ~g~~I~i~---~~IP~~~GLGSSaA~~vA~~~al~~l~g~~ls~~el~~la~~~~G~~~~~~~GG~~~~~~--~~----- 160 (317)
T 2gs8_A 91 AFVKMETQ---NNMPTAAGLSSSSSGLSALVKACDQLFDTQLDQKALAQKAKFASGSSSRSFFGPVAAWDK--DS----- 160 (317)
T ss_dssp CCEEEEEE---CCSCGGGCCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGGGGSCSEEEECT--TT-----
T ss_pred CCeEEEEe---CCCCCCCchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcchhHhhhcCChheEee--CC-----
Confidence 45554322 34666677753 23555778899999999999999999999999999999975 11
Q ss_pred CCCccccccCCceeEecCCCCCccceeeEEEEecCCCCccc
Q psy11141 506 NGDIGRKQFELSNAEQIISESYWGSMRVIILVHLEYVPRVS 546 (566)
Q Consensus 506 ~~~~~~~~~~d~~a~~~~~~~~~~~~~~~i~v~~~~~k~vs 546 (566)
. +...++++ .+++++|++++.+.+.++
T Consensus 161 ~---------~~~~~~~~-----~~~~~~v~i~~~~~~~~~ 187 (317)
T 2gs8_A 161 G---------AIYKVETD-----LKMAMIMLVLNAAKKPIS 187 (317)
T ss_dssp C---------CEEECCCC-----CCEEEEEEECCCSSCCSC
T ss_pred C---------ceeEEEcc-----ccccEEEEEEECCCcCcc
Confidence 1 34566662 167888888888777664
No 34
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=91.65 E-value=0.74 Score=45.37 Aligned_cols=50 Identities=14% Similarity=0.014 Sum_probs=39.6
Q ss_pred cccCCCCCch--------hhHHHHHHcCCCChHHHHHHHhhccccccccccCCeEEee
Q psy11141 446 HLLNEAGAPK--------HLMFTLAYALGLNTSEVSHIARQGSGSACRSMFGGFVRWK 495 (566)
Q Consensus 446 ~Lld~~Glp~--------ala~~~~~~~~~~~~~~s~~ar~gsgsa~rs~~g~~~~w~ 495 (566)
.++-..||-- ..+++.+++++++.+++.++|+.+++..+.+++||++.+.
T Consensus 89 ~IP~g~GLGsSsa~a~a~l~al~~l~~~~l~~~el~~la~~~e~dv~~~~~gg~~~~~ 146 (271)
T 2v8p_A 89 NIPPGAGLGGGSSNLAVVLKKVNELLGSPLSEEELRELVGSISADAPFFLLGKSAIGR 146 (271)
T ss_dssp CSCTTSSSCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHCTTTGGGGTCSEEEEE
T ss_pred CCCCCCCCchHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCCHHHHhcCCeEEEE
Confidence 4566667652 2345566888999999999999998999999999999865
No 35
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=87.55 E-value=1.1 Score=44.25 Aligned_cols=51 Identities=18% Similarity=0.288 Sum_probs=39.2
Q ss_pred cccCCCCCch--------hhHHHHHHcCCCChHHHHHHHhhccc---------cccccccCCeEEeec
Q psy11141 446 HLLNEAGAPK--------HLMFTLAYALGLNTSEVSHIARQGSG---------SACRSMFGGFVRWKT 496 (566)
Q Consensus 446 ~Lld~~Glp~--------ala~~~~~~~~~~~~~~s~~ar~gsg---------sa~rs~~g~~~~w~~ 496 (566)
.++-..||-. ..+++.+++++++.+++..+|+.+.+ -.++++|||++.|..
T Consensus 84 ~iP~g~GLGSSsa~~~a~~~al~~l~~~~l~~~~l~~la~~~e~~~~g~~~~ddv~~~~~gg~~~~~~ 151 (296)
T 1h72_C 84 GVKAGSGLGSSAASSAGTAYAINELFKLNLDKLKLVDYASYGELASSGAKHADNVAPAIFGGFTMVTN 151 (296)
T ss_dssp SSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHSSCCCTTHHHHHHCSEEEEEE
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcCcccCCCCccchHHHHhCCEEEEEe
Confidence 4555677652 22445668889999999999998877 678999999999954
No 36
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=74.72 E-value=6 Score=39.58 Aligned_cols=51 Identities=24% Similarity=0.424 Sum_probs=36.8
Q ss_pred cccCCCCCch--------hhHHHHHHcCCCChHHHHHHHhhccc---------cccccccCCeEEeec
Q psy11141 446 HLLNEAGAPK--------HLMFTLAYALGLNTSEVSHIARQGSG---------SACRSMFGGFVRWKT 496 (566)
Q Consensus 446 ~Lld~~Glp~--------ala~~~~~~~~~~~~~~s~~ar~gsg---------sa~rs~~g~~~~w~~ 496 (566)
.++-..||-. ..+.+.+++++++.+++..+|+.+.+ -.+.++|||++.|..
T Consensus 105 ~iP~g~GLGSSsA~~~a~~~al~~l~~~~l~~~~l~~~a~~~E~~~~G~~~G~D~~~~~~Gg~~~~~~ 172 (332)
T 2hfs_A 105 PLVPSSGIGASASDVVAFSRALSELYQLNLTDEEVNLSAFVGEGGYHGTPSGADNTAATYGGLILYRR 172 (332)
T ss_dssp SCCCCTTSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHGGGSSSCCCSHHHHHHHHCEEEEEEE
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcHhHHHHhcCCeEEEec
Confidence 3555566652 22444668889999999999976542 466889999999976
No 37
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=73.54 E-value=9.2 Score=37.25 Aligned_cols=39 Identities=8% Similarity=0.048 Sum_probs=32.4
Q ss_pred HHHHHHcCCCChHHHHHHHhh----ccccccc-----cccCCeEEeec
Q psy11141 458 MFTLAYALGLNTSEVSHIARQ----GSGSACR-----SMFGGFVRWKT 496 (566)
Q Consensus 458 a~~~~~~~~~~~~~~s~~ar~----gsgsa~r-----s~~g~~~~w~~ 496 (566)
+.+.+++++++.+++..+|+. |+|..|. ++|||++.|..
T Consensus 102 al~~~~~~~l~~~~l~~la~~~E~~~~~~p~g~d~~~~~~gg~~~~~~ 149 (292)
T 2oi2_A 102 AVFDYYQADLPHDVLEILVNRAEMIAHMNPSGLDAKTCLSDQPIRFIK 149 (292)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHHTTCCCCSHHHHHHTCSSCEEEET
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCchhHHHHhcCceEEEEc
Confidence 455678899999999999986 4888887 78999999865
No 38
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=72.34 E-value=6.8 Score=38.33 Aligned_cols=82 Identities=11% Similarity=0.182 Sum_probs=50.8
Q ss_pred cccCCCCCchh--------hHHHHHHcCCCChHHHHHHHhhccccccccccCCeEEeecCCCCCCCCCCCCccccccCCc
Q psy11141 446 HLLNEAGAPKH--------LMFTLAYALGLNTSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSEGNGDIGRKQFELS 517 (566)
Q Consensus 446 ~Lld~~Glp~a--------la~~~~~~~~~~~~~~s~~ar~gsgsa~rs~~g~~~~w~~~~~g~~~~~~~~~~~~~~~d~ 517 (566)
.++-..||-.. .+++.++++++ ++..+|+..++..+.++|||++.+.. . +.
T Consensus 84 ~IP~g~GLGSSsa~a~a~l~al~~l~~~~l---~l~~la~~~g~dv~~~~~Gg~~~~~g----~---g~----------- 142 (275)
T 1uek_A 84 RIPEGAGLGGGSSDAAQVLLALQALYPAEV---DLFALARTLGADVPFFLLGRGAEARG----V---GE----------- 142 (275)
T ss_dssp CSCSSSSSCHHHHHHHHHHHHHHHHSCSCC---CHHHHHHHHCTTHHHHHHCSEEEEET----T---TT-----------
T ss_pred CCCCcCcccHHHHHHHHHHHHHHHHcCCCh---HHHHHHHHhCCChHHHhcCCeEEEEc----c---Cc-----------
Confidence 35555666521 23334556666 88899998888999999999998642 1 10
Q ss_pred eeEecCCCCCccceeeEEEEecCCCCcccccchhhHhhcC
Q psy11141 518 NAEQIISESYWGSMRVIILVHLEYVPRVSNDTTILFKKLG 557 (566)
Q Consensus 518 ~a~~~~~~~~~~~~~~~i~v~~~~~k~vs~~~~~~~~~~~ 557 (566)
.-.++. .++++++++ .++ +++.|+..|+.+.
T Consensus 143 ~~~~l~----~~~~~~vl~-~p~----~~~sT~~~~~~~~ 173 (275)
T 1uek_A 143 RLKPLA----LPPVPAVVF-FPG----LRVPTPLVYRAVR 173 (275)
T ss_dssp EEEEEC----CCCEEEEEE-ECC----CCCCHHHHHHTCC
T ss_pred eeEEcc----CCCcEEEEE-eCC----CCCchHHHHHhCc
Confidence 134442 445665444 332 4566888887654
No 39
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=71.02 E-value=7 Score=38.81 Aligned_cols=50 Identities=12% Similarity=0.111 Sum_probs=37.7
Q ss_pred cccCCCCCch--------hhHHHHHHcCCCChHHHHHHHhhccccccccccCCeEEeec
Q psy11141 446 HLLNEAGAPK--------HLMFTLAYALGLNTSEVSHIARQGSGSACRSMFGGFVRWKT 496 (566)
Q Consensus 446 ~Lld~~Glp~--------ala~~~~~~~~~~~~~~s~~ar~gsgsa~rs~~g~~~~w~~ 496 (566)
.++-..||-. ..+++.+++++++.+++.++|+...+-.+.+++||++ |..
T Consensus 97 ~IP~g~GLGsSsa~~~a~l~al~~l~~~~l~~~~l~~la~~~e~dv~~~~~gg~~-~~~ 154 (283)
T 2ww4_A 97 RLPMGGGLGGGSSNAATVLVALNHLWQCGLSMDELAEMGLTLGADVPVFVRGHAA-FAE 154 (283)
T ss_dssp CCC-CTTSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCTTHHHHHHTBCE-EEE
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCCHHHhhcCCeE-EEE
Confidence 4555666652 2244566788999999999999888899999999988 455
No 40
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=70.74 E-value=4.7 Score=40.44 Aligned_cols=48 Identities=19% Similarity=0.222 Sum_probs=36.6
Q ss_pred cccCCCCCch--------hhHHHHHHcCCCChHHHHHHHhhcccc---ccccccCCeEE
Q psy11141 446 HLLNEAGAPK--------HLMFTLAYALGLNTSEVSHIARQGSGS---ACRSMFGGFVR 493 (566)
Q Consensus 446 ~Lld~~Glp~--------ala~~~~~~~~~~~~~~s~~ar~gsgs---a~rs~~g~~~~ 493 (566)
.++-..||-. ..+++.+++++++.+++..+|+.+.|| .+.++|||++.
T Consensus 79 ~iP~~~GLGsssa~~~a~~~al~~~~~~~l~~~el~~la~~~eg~~ddv~~~~~GG~~~ 137 (298)
T 3hul_A 79 DIPPARGLGSSSAAVVAGIELANTLAELNLSKEEKVRIAAEIEGHPDNVAPAVLGNWVV 137 (298)
T ss_dssp CSCTTSSSSHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHSCSTTHHHHHHCSEEE
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCcccCcccccCCEEE
Confidence 3555566652 234556688999999999999988884 77899999987
No 41
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=50.36 E-value=46 Score=29.64 Aligned_cols=46 Identities=11% Similarity=0.226 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhCCceEEEE-eCCCcceEEe-eccCCHHHHHHHHHhh
Q psy11141 341 SIVRFVHEFNTVVGETKVAYT-FDAGPNACLY-VLENTVPLLLSTLVQY 387 (566)
Q Consensus 341 ~Ii~~v~~l~~~~G~~~~a~t-sGAGPnV~~l-~~~~~~~~v~~~L~~~ 387 (566)
++-...+++....+ +.+.|+ +|+|+.|+.+ +..++.+.+.++|++.
T Consensus 57 elakeaerl~~efn-i~v~y~imgsgsgvm~i~f~gddlea~ekalkem 104 (170)
T 4hhu_A 57 ELAKEAERLKAEFN-INVQYQIMGSGSGVMVIVFEGDDLEALEKALKEM 104 (170)
T ss_dssp HHHHHHHHHHHHHT-CEEEEEEECTTCCEEEEEEECSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-eEEEEEEEeCCceEEEEEEecCcHHHHHHHHHHH
Confidence 34444555555444 556665 7999999988 4567788777777653
No 42
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=38.41 E-value=43 Score=32.81 Aligned_cols=51 Identities=18% Similarity=0.083 Sum_probs=36.8
Q ss_pred cccCCCCCch--------hhHHHHHHcCCCChHHHHHHHhhc--------ccccccc-ccCCeEEeec
Q psy11141 446 HLLNEAGAPK--------HLMFTLAYALGLNTSEVSHIARQG--------SGSACRS-MFGGFVRWKT 496 (566)
Q Consensus 446 ~Lld~~Glp~--------ala~~~~~~~~~~~~~~s~~ar~g--------sgsa~rs-~~g~~~~w~~ 496 (566)
.++-..||-. ..+++.+++++++.+++..+|+.+ ||+.+.. ++||++.++.
T Consensus 94 ~iP~g~GLGSSsa~~~a~~~al~~l~~~~l~~~~l~~la~~~E~~~~g~~sG~d~~~~~~g~~~~~~~ 161 (308)
T 2x7i_A 94 NLPPSRGLGSSAAVAVAFVRASYDFLGKSLTKEELIEKANWAEQIAHGKPSGIDTQTIVSGKPVWFQK 161 (308)
T ss_dssp CCCTTSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHSSCCHHHHHHHHHTSCEEEET
T ss_pred cCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHCCCCchHHHHHhhCCceEEEEc
Confidence 3555566652 224446788899999999999987 6777665 4789888775
No 43
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=36.11 E-value=30 Score=34.63 Aligned_cols=38 Identities=13% Similarity=0.199 Sum_probs=30.4
Q ss_pred HHHHHHcCCCChHHHHHHHhhccccccccccCCeEEeec
Q psy11141 458 MFTLAYALGLNTSEVSHIARQGSGSACRSMFGGFVRWKT 496 (566)
Q Consensus 458 a~~~~~~~~~~~~~~s~~ar~gsgsa~rs~~g~~~~w~~ 496 (566)
+++.+++++++.+++..+|+...+=..=+++||++ |..
T Consensus 116 al~~~~~~~l~~~~l~~la~~~~~Dv~~~~~Gg~~-~~~ 153 (306)
T 3pyf_A 116 AMNSLWELNVPRRDLRMLAARLGSDVPFALHGGTA-LGT 153 (306)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHCTTHHHHHHBSEE-EEC
T ss_pred HHHHHhCCCcCHHHHHHHHHHhCCCCceeecCceE-EEE
Confidence 55566889999999999998776667788999986 444
No 44
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=35.16 E-value=68 Score=33.26 Aligned_cols=51 Identities=12% Similarity=0.156 Sum_probs=34.8
Q ss_pred cccCCCCCch--------hhHHHHHHcCCCChHHHHHHHhhc----ccc------ccccccCC--eEEeec
Q psy11141 446 HLLNEAGAPK--------HLMFTLAYALGLNTSEVSHIARQG----SGS------ACRSMFGG--FVRWKT 496 (566)
Q Consensus 446 ~Lld~~Glp~--------ala~~~~~~~~~~~~~~s~~ar~g----sgs------a~rs~~g~--~~~w~~ 496 (566)
.++-..||-. ..+++.+++++++.+++..+|+.+ .|+ .+.++||| .+.|..
T Consensus 149 ~IP~gaGLGSSaA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~d 219 (419)
T 1pie_A 149 EIPTASGLSSSASLELLVGVVLDDLFNLNVPRLELVQLGQKTENDYIGVNSGILDQFAIGFGEVKKAIELD 219 (419)
T ss_dssp CSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHCBTTEEEEEE
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccchhHHHHHhccCCeEEEee
Confidence 4566677763 224445678889999999999984 232 24789998 566654
No 45
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=33.49 E-value=61 Score=33.21 Aligned_cols=50 Identities=22% Similarity=0.270 Sum_probs=32.6
Q ss_pred ccCCCCCchh--------hHHHHHHcC-----CCC-------hHHHHHHHhh---------cccc---ccccccCCeEEe
Q psy11141 447 LLNEAGAPKH--------LMFTLAYAL-----GLN-------TSEVSHIARQ---------GSGS---ACRSMFGGFVRW 494 (566)
Q Consensus 447 Lld~~Glp~a--------la~~~~~~~-----~~~-------~~~~s~~ar~---------gsgs---a~rs~~g~~~~w 494 (566)
++-..||-.. .+++.++++ +++ ..++..|+|+ |.+| .+.++|||++.|
T Consensus 137 iP~g~GLGSSaA~~va~~~al~~l~~~~~~~~~l~~~~~~~~~~~l~~l~~~A~~~E~~~~G~~sG~D~~~~~~Gg~~~~ 216 (395)
T 1kvk_A 137 LPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGVDNSVSTWGGALRY 216 (395)
T ss_dssp SCTTSSSCHHHHHHHHHHHHHHHHTTSSCCGGGGCCSEECCCHHHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHCSEEEE
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHhCcccccccccccccccchhhHHHHHHHHHHhhheEecCCCCcchHHhhhcceEEE
Confidence 4555666522 233355666 667 7777788776 6664 556999999997
Q ss_pred ec
Q psy11141 495 KT 496 (566)
Q Consensus 495 ~~ 496 (566)
..
T Consensus 217 ~~ 218 (395)
T 1kvk_A 217 QQ 218 (395)
T ss_dssp SS
T ss_pred cC
Confidence 54
No 46
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=32.82 E-value=24 Score=34.88 Aligned_cols=49 Identities=12% Similarity=0.129 Sum_probs=34.9
Q ss_pred cccCCCCCchh--------hHHHHHHcCCCChHHHHHHHhhc--------cc-cccccccCCeEEe
Q psy11141 446 HLLNEAGAPKH--------LMFTLAYALGLNTSEVSHIARQG--------SG-SACRSMFGGFVRW 494 (566)
Q Consensus 446 ~Lld~~Glp~a--------la~~~~~~~~~~~~~~s~~ar~g--------sg-sa~rs~~g~~~~w 494 (566)
.++-..||-.. .+++.+++++++.+++..+|+.. || -.+.++|||++.+
T Consensus 107 ~iP~~~GLGsSsa~~~a~~~al~~l~~~~l~~~~l~~~a~~~E~~~~g~~sg~D~~~~~~Gg~~~~ 172 (317)
T 1kkh_A 107 KIPISCGLGSSASITIGTIKAVSGFYNKELKDDEIAKLGYMVEKEIQGKASITDTSTITYKGILEI 172 (317)
T ss_dssp CSCSSSSSCHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHSSSCCSHHHHHHHHCSEEEE
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHhCCeEEE
Confidence 35556676522 23345567789999999999864 24 6788999999987
No 47
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=25.73 E-value=1e+02 Score=31.65 Aligned_cols=46 Identities=13% Similarity=0.185 Sum_probs=31.9
Q ss_pred cccCCCCCch--------hhHHHHHHcCCCChHHHHHHHhhc----ccccc------ccccCCe
Q psy11141 446 HLLNEAGAPK--------HLMFTLAYALGLNTSEVSHIARQG----SGSAC------RSMFGGF 491 (566)
Q Consensus 446 ~Lld~~Glp~--------ala~~~~~~~~~~~~~~s~~ar~g----sgsa~------rs~~g~~ 491 (566)
.++-..||-. ..+++.+++++++.+++..+|+.+ .|+.| -++|||+
T Consensus 139 ~IP~gaGLGSSaA~~vA~~~al~~l~~~~l~~~~l~~la~~~E~~~~G~~~G~~D~~~~~~Gg~ 202 (399)
T 1wuu_A 139 SVPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQQAEHSFAGMPCGIMDQFISLMGQK 202 (399)
T ss_dssp CSCTTSSSCHHHHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHHHHTCCCCCSHHHHHHHHCCT
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHhccC
Confidence 4666677753 224445678889999999999975 34443 3799995
Done!