RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11141
(566 letters)
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis,
lipid synthesis, lyase, steroid biosynthesis, sterol
biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Length = 414
Score = 297 bits (760), Expect = 1e-95
Identities = 155/368 (42%), Positives = 219/368 (59%), Gaps = 38/368 (10%)
Query: 115 RMHAKTSVALSPDFTEDKLWLNGK-----------------------KLAEQEKSSREMA 151
++ T+VA+S DFTED++WLNG+ + E +
Sbjct: 61 QLKTTTTVAISKDFTEDRIWLNGREEDVGQPRLQACLREIRRLARKRRSTEDGDTLPLSL 120
Query: 152 DWKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLNTSEVSHIARQGSGSACRSMFG 211
+K+H+ S NNFPTAAGLASSAAGY+CL +TLA G+ ++S +AR+GSGSACRS++G
Sbjct: 121 SYKVHVASVNNFPTAAGLASSAAGYACLAYTLAQVYGVEG-DLSEVARRGSGSACRSLYG 179
Query: 212 GFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTD 271
GFV W+ + D S A QI E +W +R++ILVV+ K T ST
Sbjct: 180 GFVEWQMGEQADGKD------------SIARQIAPEWHWPQLRILILVVSADKKQTGSTV 227
Query: 272 GMQRTTLTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPP 331
GMQ + TSTL + R ++VP R M ++ +DF FA+LTMKDSNQFHA CLDT+PP
Sbjct: 228 GMQTSVETSTLLKFRAESVVPERMKEMTRCIQEQDFQGFAQLTMKDSNQFHATCLDTFPP 287
Query: 332 IVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLENTVPLLLSTLVQYFPPS 391
I Y+NDTS I++ VH FNT G+TKVAYTFDAGPNA ++ LE+TV ++ + FPP+
Sbjct: 288 ISYLNDTSRRIIQLVHRFNTHHGQTKVAYTFDAGPNAVIFTLEDTVAEFVAAVRHSFPPA 347
Query: 392 SGISAPYIRGLEYLNILPPVQLPSFTPQP-AGLLQYLISTKIGSGPKILDDIPNNHLLNE 450
+ +L + +P G +QY+I+T++G GP++LDD ++HLL +
Sbjct: 348 ANGDKFLKGLQVAPVLLSDELKAALVVEPSPGGVQYIIATQVGPGPQVLDD-THDHLLGQ 406
Query: 451 AGAPKHLM 458
G P+ +
Sbjct: 407 DGLPQRDL 414
Score = 57.9 bits (139), Expect = 3e-09
Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 13/90 (14%)
Query: 457 LMFTLAYALGLNTSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSEGNGDIGRKQFEL 516
L +TLA G+ ++S +AR+GSGSACRS++GGFV W+ G+Q++G
Sbjct: 148 LAYTLAQVYGVEG-DLSEVARRGSGSACRSLYGGFVEWQ---MGEQADGKD--------- 194
Query: 517 SNAEQIISESYWGSMRVIILVHLEYVPRVS 546
S A QI E +W +R++ILV +
Sbjct: 195 SIARQIAPEWHWPQLRILILVVSADKKQTG 224
Score = 56.0 bits (134), Expect = 1e-08
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 7/99 (7%)
Query: 14 LSWFYWDKKLNKESKKYYIEVAYTFDAGPNACLYVLENTVPLLLSTLVQYFPPSSGISAP 73
+ N + +VAYTFDAGPNA ++ LE+TV ++ + FPP++
Sbjct: 296 RRIIQLVHRFNTHHGQ--TKVAYTFDAGPNAVIFTLEDTVAEFVAAVRHSFPPAANGDKF 353
Query: 74 YIRGLEYLNILPPVQVKLSNNDIITLKSELNGIEPIEIT 112
+ PV + + ++ G++ I T
Sbjct: 354 L-----KGLQVAPVLLSDELKAALVVEPSPGGVQYIIAT 387
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate
decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Length = 380
Score = 286 bits (733), Expect = 4e-92
Identities = 123/351 (35%), Positives = 174/351 (49%), Gaps = 34/351 (9%)
Query: 116 MHAKTSVALSPDFTEDKLWLNGKKLAEQ-------------EKSSREMADWKMHICSENN 162
+KTSV L D D L LNG ++ E+ + K++I SENN
Sbjct: 46 FRSKTSVELRDDIETDTLRLNGTEVDVGKTPRVQSMLLHLRSTCPEELKNKKVNIVSENN 105
Query: 163 FPTAAGLASSAAGYSCLVFTLAYALGLNTSEVSHIARQGSGSACRSMFGGFVRWKTLPEG 222
FPTAAG+ASSA+GY + L A T VS +AR GSGSACRS FGGFV W +
Sbjct: 106 FPTAAGMASSASGYCAMSAALIRAFKSTT-NVSMLARLGSGSACRSAFGGFVIWNKGEKP 164
Query: 223 QQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRTTLTSTL 282
SD A Q + E++W ++V+ V+ K SST GMQ++ TS L
Sbjct: 165 DGSD------------CVATQFVDETHWPEIQVMCAVLKGAQKDVSSTKGMQQSLKTSPL 212
Query: 283 YEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMNDTSHSI 342
+ R++ VP R A++ARDF FAE+ M +S+ C T P I Y + S+++
Sbjct: 213 MKKRISETVPERMKIASRAIKARDFATFAEIAMLESDDLQEICATTEPKITYATEDSYAM 272
Query: 343 VRFVHEFNTVVGETKVAYTFDAGPNACLYVLENTVPLLLSTLVQYFPPSSGISAPYIRGL 402
+R V +N G T +AYTFDAG N L+VL+ +P ++ L+++FP R L
Sbjct: 273 IRLVKAYNAKKGRTALAYTFDAGANCFLFVLKEDLPEAVAMLMEHFPTPFEKFFFGDREL 332
Query: 403 EYLNILPPVQLP----SFTPQPAGLLQYLISTKIGSGPKILDDIPNNHLLN 449
L + V LP P + L+ + +G G K L P+ L+
Sbjct: 333 --LEKVKVVSLPDEYKKLIDHPKKPFEMLLQSPVGCGVKYLG--PSESLIP 379
Score = 53.2 bits (127), Expect = 1e-07
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 15/92 (16%)
Query: 458 MFTLAYALG---LNTSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSEGNGDIGRKQF 514
++ AL +T+ VS +AR GSGSACRS FGGFV W + S+
Sbjct: 119 YCAMSAALIRAFKSTTNVSMLARLGSGSACRSAFGGFVIWNKGEKPDGSD---------- 168
Query: 515 ELSNAEQIISESYWGSMRVIILVHLEYVPRVS 546
A Q + E++W ++V+ V VS
Sbjct: 169 --CVATQFVDETHWPEIQVMCAVLKGAQKDVS 198
Score = 52.9 bits (126), Expect = 1e-07
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 15 SWFYWDKKLNKESKKYYIEVAYTFDAGPNACLYVLENTVPLLLSTLVQYFPPSSGISAPY 74
+ K N + + +AYTFDAG N L+VL+ +P ++ L+++FP
Sbjct: 271 AMIRLVKAYNAKKGR--TALAYTFDAGANCFLFVLKEDLPEAVAMLMEHFPTPFEKFFFG 328
Query: 75 IRGLEYLNILPPVQVKLSNNDII 97
R L L + V + +I
Sbjct: 329 DREL--LEKVKVVSLPDEYKKLI 349
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure,
ATP binding, CHOL biosynthesis, structural genomics,
PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5
d.58.26.2
Length = 416
Score = 277 bits (709), Expect = 4e-88
Identities = 142/367 (38%), Positives = 192/367 (52%), Gaps = 42/367 (11%)
Query: 116 MHAKTSVALSPDFTEDKLWLNGK---------------------KLAEQEKSSREMADWK 154
+ TS A +P+F D LWLNG+ ++ ++ S ++ WK
Sbjct: 64 LRTLTSAATAPEFERDTLWLNGEPHSIDNERTQNCLRDLRQLRKEMESKDASLPTLSQWK 123
Query: 155 MHICSENNFPTAAGLASSAAGYSCLVFTLAYA--LGLNTSEVSHIARQGSGSACRSMFGG 212
+HI SENNFPTAAGLASSAAG++ LV +A L +TSE+S IAR+GSGSACRS+FGG
Sbjct: 124 LHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEISRIARKGSGSACRSLFGG 183
Query: 213 FVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTDG 272
+V W+ D S A QI S W M+ +LVV+D K SST G
Sbjct: 184 YVAWEMGKAEDGHD------------SMAVQIADSSDWPQMKACVLVVSDIKKDVSSTQG 231
Query: 273 MQRTTLTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPI 332
MQ T TS L++ R+ +VP R M +A+ +DF FA+ TM DSN FHA CLD++PPI
Sbjct: 232 MQLTVATSELFKERIEHVVPKRFEVMRKAIVEKDFATFAKETMMDSNSFHATCLDSFPPI 291
Query: 333 VYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLENTVPLLLSTLVQYFPPSS 392
YMNDTS I+ + H N GET VAYTFDAGPNA LY L L + + + F
Sbjct: 292 FYMNDTSKRIISWCHTINQFYGETIVAYTFDAGPNAVLYYLAENESKLFAFIYKLFGSVP 351
Query: 393 GISAPYIRGLEYLNILPPVQLP----SFTPQPAGLLQYLISTKIGSGPKILDDIPNNHLL 448
G + + + +I T++GSGP+ ++ + +
Sbjct: 352 GWDKKFTTEQLEAFNHQFESSNFTARELDLELQKDVARVILTQVGSGPQETNE---SLID 408
Query: 449 NEAGAPK 455
+ G PK
Sbjct: 409 AKTGLPK 415
Score = 53.7 bits (128), Expect = 8e-08
Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 12/85 (14%)
Query: 462 AYALGLNTSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSEGNGDIGRKQFELSNAEQ 521
Y L +TSE+S IAR+GSGSACRS+FGG+V W+ G+ +G+ S A Q
Sbjct: 155 LYQLPQSTSEISRIARKGSGSACRSLFGGYVAWE---MGKAEDGHD---------SMAVQ 202
Query: 522 IISESYWGSMRVIILVHLEYVPRVS 546
I S W M+ +LV + VS
Sbjct: 203 IADSSDWPQMKACVLVVSDIKKDVS 227
Score = 51.8 bits (123), Expect = 3e-07
Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 3/94 (3%)
Query: 14 LSWFYWDKKLNKESKKYYIEVAYTFDAGPNACLYVLENTVPLLLSTLVQYFPPSSGISAP 73
W +N+ + VAYTFDAGPNA LY L L + + + F G
Sbjct: 299 KRIISWCHTINQFYGE--TIVAYTFDAGPNAVLYYLAENESKLFAFIYKLFGSVPGWDKK 356
Query: 74 YIRGLEY-LNILPPVQVKLSNNDIITLKSELNGI 106
+ N + + L+ ++ +
Sbjct: 357 FTTEQLEAFNHQFESSNFTARELDLELQKDVARV 390
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase;
1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A*
3qt8_A* 2hk2_A 2hk3_A
Length = 332
Score = 208 bits (530), Expect = 1e-62
Identities = 96/310 (30%), Positives = 152/310 (49%), Gaps = 30/310 (9%)
Query: 109 IEITFQRMHAKTSVALSPDFTEDKLWLNGKKLAEQEKSS--------REMADWK--MHIC 158
+ +T R + +T V PDFTED L LNG ++ +EK R++A + I
Sbjct: 39 LSVTLDRFYTETKVTFDPDFTEDCLILNGNEVNAKEKEKIQNYMNIVRDLAGNRLHARIE 98
Query: 159 SENNFPTAAGLASSAAGYSCLVFTLA--YALGLNTSEVSHIARQGSGSACRSMFGGFVRW 216
SEN PTAAGLASSA+ Y+ L +L L+ +++S +AR+GSGSA RS+FGGF W
Sbjct: 99 SENYVPTAAGLASSASAYAALAAACNEALSLNLSDTDLSRLARRGSGSASRSIFGGFAEW 158
Query: 217 KTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRT 276
+ + S A I S + + +I +V+N+Q+K SS GM T
Sbjct: 159 EKGHDDLTSY--------------AHGINSNGWEKDLSMIFVVINNQSKKVSSRSGMSLT 204
Query: 277 TLTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMN 336
TS Y++ ++ V + +EA++ +DF R E+ + + HA L PP Y+
Sbjct: 205 RDTSRFYQYWLD-HVDEDLNEAKEAVKNQDFQRLGEVIEANGLRMHATNLGAQPPFTYLV 263
Query: 337 DTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLENTVPLLLSTLVQYFPPSSGISA 396
S+ + V + +T DAGPN + V + ++ ++ F S I++
Sbjct: 264 QESYDAMAIVEQCRK--ANLPCYFTMDAGPNVKVLVEKKNKQAVMEQFLKVFDESKIIAS 321
Query: 397 PYI-RGLEYL 405
I G+E +
Sbjct: 322 DIISSGVEII 331
Score = 53.4 bits (127), Expect = 7e-08
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 14/80 (17%)
Query: 458 MFTLAYALGLNTSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSEGNGDIGRKQFELS 517
A +L L+ +++S +AR+GSGSA RS+FGGF W+ + S
Sbjct: 122 ACNEALSLNLSDTDLSRLARRGSGSASRSIFGGFAEWEKGHDDLT--------------S 167
Query: 518 NAEQIISESYWGSMRVIILV 537
A I S + + +I +V
Sbjct: 168 YAHGINSNGWEKDLSMIFVV 187
Score = 45.7 bits (107), Expect = 2e-05
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 25 KESKKYYIEVAYTFDAGPNACLYVLENTVPLLLSTLVQYFPPSSGISAPYI-RGLEYL 81
++ +K + +T DAGPN + V + ++ ++ F S I++ I G+E +
Sbjct: 274 EQCRKANLPCYFTMDAGPNVKVLVEKKNKQAVMEQFLKVFDESKIIASDIISSGVEII 331
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative
II(PSI II), NYSGXRC, structural genomics; 2.27A
{Legionella pneumophila}
Length = 323
Score = 204 bits (520), Expect = 2e-61
Identities = 57/308 (18%), Positives = 103/308 (33%), Gaps = 47/308 (15%)
Query: 109 IEITFQRMHAKTSVALSP--DFTEDKLWLNGKKLAEQEKSS-----------REMA--DW 153
+ T + + + P + L + G + +E
Sbjct: 32 LSYTLSNLLSSVKLEKLPTKKDIWEPLTIPGAPEFNLSVEAQKRFIDHLVRLKEYFGYVG 91
Query: 154 KMHICSENNFPTAAGLASSAAGYSCLVFTLAYALG-------LNTSEVSHIARQGSGSAC 206
I S NNFP ++GLASSA+ ++ L + AL + E + ++R GSGS+C
Sbjct: 92 GFLIQSSNNFPHSSGLASSASSFAALTKCASIALSELTQKPLPSIDEQAQLSRLGSGSSC 151
Query: 207 RSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKS 266
RS + + W G + + + + ++V++ Q K
Sbjct: 152 RSFYAPWALW----TGDKVS------------------AIDLPYKDLLHQVIVISSQEKE 189
Query: 267 TSSTDGMQRTTLTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCL 326
S + TS YE R + + A +D+ ++ + H
Sbjct: 190 IPSRVAHK-LVKTSPFYETRSE-RAEANLKLLLNAFENKDWTSIYQICWHEFLDMHQLFK 247
Query: 327 DTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLENTVPLLLSTLVQ 386
P Y+ D + I+ + +F G T DAGPN L + L
Sbjct: 248 TCEKPFSYITDNTLHILSVIEKFWNEKG-DGPVVTMDAGPNVHLLYRSDQTDLARQFKSD 306
Query: 387 YFPPSSGI 394
+ + +
Sbjct: 307 HLVGNYDV 314
Score = 49.1 bits (116), Expect = 2e-06
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 451 AGAPKHLMFTLAYALGLNTSEVSHIARQGSGSACRSMFGGFVRW 494
+ L + E + ++R GSGS+CRS + + W
Sbjct: 118 TKCASIALSELTQKPLPSIDEQAQLSRLGSGSSCRSFYAPWALW 161
Score = 47.9 bits (113), Expect = 5e-06
Identities = 11/57 (19%), Positives = 16/57 (28%), Gaps = 3/57 (5%)
Query: 14 LSWFYWDKKLNKESKKYYIEVAYTFDAGPNACLYVLENTVPLLLSTLVQYFPPSSGI 70
L +K E T DAGPN L + L + + +
Sbjct: 261 LHILSVIEKFWNEKG---DGPVVTMDAGPNVHLLYRSDQTDLARQFKSDHLVGNYDV 314
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen
structural genomics, PSI, protein structure initiative;
HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Length = 317
Score = 194 bits (494), Expect = 1e-57
Identities = 75/292 (25%), Positives = 119/292 (40%), Gaps = 35/292 (11%)
Query: 109 IEITFQRMHAKTSVALSPD-FTEDKLWLNGKKLAEQEKSS--------REMADWKMHICS 159
I +T + M TSV+ PD T D+ ++NG ++E + R+ + + +
Sbjct: 38 ISLTLENMFTTTSVSFLPDTATSDQFYINGILQNDEEHTKISAIIDQFRQPGQAFVKMET 97
Query: 160 ENNFPTAAGLASSAAGYSCLVFTLAYALGLNTS--EVSHIARQGSGSACRSMFGGFVRWK 217
+NN PTAAGL+SS++G S LV ++ A+ SGS+ RS FG W
Sbjct: 98 QNNMPTAAGLSSSSSGLSALVKACDQLFDTQLDQKALAQKAKFASGSSSRSFFGPVAAWD 157
Query: 218 TLPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRTT 277
++ I M +I+LV+N K SS +GM+
Sbjct: 158 K---------------------DSGAIYKVETDLKMAMIMLVLNAAKKPISSREGMKLCR 196
Query: 278 LTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFHACCLDTYPPIVYMND 337
TST ++ V M L+ +F + +LT ++ HA PP Y+
Sbjct: 197 DTSTTFDQWVEQSAI-DYQHMLTYLKTNNFEKVGQLTEANALAMHATTKTANPPFSYLTK 255
Query: 338 TSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLENTVPLLLSTLVQYFP 389
S+ + V E +T DAGPN + LE + L L + +
Sbjct: 256 ESYQAMEAVKELRQ--EGFACYFTMDAGPNVKVLCLEKDLAQLAERLGKNYR 305
Score = 45.7 bits (107), Expect = 2e-05
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 25 KESKKYYIEVAYTFDAGPNACLYVLENTVPLLLSTLVQYFP 65
KE ++ +T DAGPN + LE + L L + +
Sbjct: 265 KELRQEGFACYFTMDAGPNVKVLCLEKDLAQLAERLGKNYR 305
Score = 43.4 bits (101), Expect = 1e-04
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 462 AYALGLNTSEVSHIARQGSGSACRSMFGGFVRW 494
+ L+ ++ A+ SGS+ RS FG W
Sbjct: 124 LFDTQLDQKALAQKAKFASGSSSRSFFGPVAAW 156
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 1e-04
Identities = 87/537 (16%), Positives = 152/537 (28%), Gaps = 196/537 (36%)
Query: 108 PIEITFQRMHAKTSVALS-PDFTEDKLWLNGKKLAEQ-EKSSREMADWKMHICSENNFPT 165
P+ ++ H L P T + +L EQ K E + +++ T
Sbjct: 8 PLTLS----HGSLEHVLLVP--TA--SFFIASQLQEQFNKILPEPTE---GFAADDEPTT 56
Query: 166 AAGLASSAAGYSCLVFTLAYALGLNTSEVSHIARQGSGSAC----RSMFGGFVRWKTLPE 221
A L F L Y VS + F L
Sbjct: 57 PAELVGK--------F-LGY--------VSSLVEPSKVGQFDQVLNLCLTEFEN-CYL-- 96
Query: 222 GQQSDGNGDI--------GRKQCELSNAEQIISESYWGSMRVIILVVNDQAKS---TSST 270
+GN DI L +++I ++Y + + + ++ S +
Sbjct: 97 ----EGN-DIHALAAKLLQENDTTLVKTKELI-KNYITARIMAKRPFDKKSNSALFRAVG 150
Query: 271 DGMQRTTLTSTLYEHRVNTIVPSRCSGMEEALRARDF-------PRFAELTMKDSNQFHA 323
+G + L A+ F F EL + +
Sbjct: 151 EG------NAQLV-----------------AI----FGGQGNTDDYFEEL----RDLY-- 177
Query: 324 CCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYT--FD-----AGPNA---CLYVL 373
TY +V D + E + + +T + P+ Y+L
Sbjct: 178 ---QTYHVLV--GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL 232
Query: 374 ENTV--PLL-LSTLVQY--FPPSSGIS----APYIRGL--EYLNILPPVQL------PSF 416
+ PL+ + L Y G + Y++G ++ V + SF
Sbjct: 233 SIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF 292
Query: 417 TPQPAGLLQYLISTKIGS-----------GPKILDDIPNNHLLNEAGAPKHLMFTLAYAL 465
+ L IG P IL+D N NE G P M +++
Sbjct: 293 FVSVRKAITVLFF--IGVRCYEAYPNTSLPPSILEDSLEN---NE-GVPSP-MLSIS--- 342
Query: 466 GLNTSEV-SHIARQGSGSACRSMFGGFVRWKTLPEGQQ---SEGNGDIGRKQFELSNAEQ 521
L +V ++ + LP G+Q S N G K
Sbjct: 343 NLTQEQVQDYVNK--------------TN-SHLPAGKQVEISLVN---GAKNL------- 377
Query: 522 IIS---ESYWGSMRVIILVHLEYVPRVSNDTTILF--KKL---------GVPRLNYH 564
++S +S +G + + + P + + I F +KL P +H
Sbjct: 378 VVSGPPQSLYG---LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP---FH 428
Score = 31.9 bits (72), Expect = 0.62
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 9/63 (14%)
Query: 327 DTYPPIVY--MNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLENTVPLLLSTL 384
+ Y +++ + D + E N E +YTF L + T P L L
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEIN----EHSTSYTFR-SEKGLLSATQFTQPALT--L 1738
Query: 385 VQY 387
++
Sbjct: 1739 MEK 1741
Score = 31.6 bits (71), Expect = 0.89
Identities = 50/314 (15%), Positives = 82/314 (26%), Gaps = 158/314 (50%)
Query: 2 HSYLSEKIKIPKLSWFYWDKKLNKESKKYYIEVAYTFDAGPNACLYVLENTVPLLLSTLV 61
+ + K+K K+ K++N+ S Y TF L + T P L L+
Sbjct: 1694 ETIVDGKLKTEKI-----FKEINEHSTSY------TFR-SEKGLLSATQFTQPALT--LM 1739
Query: 62 QYFPPSSGISAPYIRGLEYLNILPPVQVKLSNNDIITLKSELNGIEPIEITFQRMHAKTS 121
+ A + + LKS+ G+ P + TF A
Sbjct: 1740 EK--------AAF-------------ED---------LKSK--GLIPADATF----A--- 1760
Query: 122 VALSPDFTEDKLWLNGKKLAEQEKSSREMADWKMHICS--ENNFPTAAGLASSAAGYSCL 179
G H S E A LAS A
Sbjct: 1761 ---------------G------------------H--SLGEY---AA--LASL-AD---- 1775
Query: 180 VFTLAYALGLNTSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSDGNGDI-----GRK 234
V ++ + + V + R G + +P + N + GR
Sbjct: 1776 VMSIESLVEV----VFY--R---GMTMQVA---------VPRDELGRSNYGMIAINPGRV 1817
Query: 235 QCELSNA------EQIISESYWGSMRVIILVVNDQAKSTSSTDGMQRTTLTSTLYEHRVN 288
S E++ + W ++ +VN + Q
Sbjct: 1818 AASFSQEALQYVVERVGKRTGW-----LVEIVNYNV------ENQQ-------------- 1852
Query: 289 TIVPSRCSGMEEAL 302
V +G AL
Sbjct: 1853 -YV---AAGDLRAL 1862
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 2e-04
Identities = 40/258 (15%), Positives = 82/258 (31%), Gaps = 63/258 (24%)
Query: 3 SYLSEKIKIPKLSWFYWDKKLNKESKKYYIEVAYTFDAGPNACLYVLENTVPLLLSTLVQ 62
S ++E I+ +W W K +N + IE + L VLE P +
Sbjct: 331 SIIAESIRDGLATWDNW-KHVNCDKLTTIIE----------SSLNVLE---PAEYR---K 373
Query: 63 YFPPSSGISAPYIRGLEYLNILPPVQVKLSNNDIITLKSELNGIEPIEITFQRMHAKTSV 122
F + L++ PP + + + ++ + + + ++H + V
Sbjct: 374 MF--------------DRLSVFPP-SAHIPTILLSLIWFDVIKSDVMVVV-NKLHKYSLV 417
Query: 123 ALSPDFTEDKLWLNGKKLAEQEKSSREMADWKMH---ICSEN---NFPTAAGLASSAAGY 176
P E + + L + K E A +H + N F + + Y
Sbjct: 418 EKQPK--ESTISIPSIYLELKVKLENEYA---LHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 177 SCLVFTLAYALGLNTSEVSHIARQGSG---SACRSMFGGFVRW---KTLPEGQQSDGNGD 230
+ + H+ + R +F F R+ K + + +G
Sbjct: 473 FY--SHIGH----------HLKNIEHPERMTLFRMVFLDF-RFLEQKIRHDSTAWNASGS 519
Query: 231 IGRKQCELSNAEQIISES 248
I +L + I ++
Sbjct: 520 ILNTLQQLKFYKPYICDN 537
Score = 36.0 bits (82), Expect = 0.036
Identities = 25/142 (17%), Positives = 51/142 (35%), Gaps = 40/142 (28%)
Query: 436 PKILDDIPNNHLLNEAGAPKHLMFTLAYALGLNTSEVSHIARQGSG-SACRSMFGGFVRW 494
+D+ + + PK + L+ E+ HI S +F W
Sbjct: 27 DAFVDNFDCKDVQDM---PKSI---------LSKEEIDHIIMSKDAVSGTLRLF-----W 69
Query: 495 KTLPEGQQSEGNGDIGRKQFELSNAEQIISESY---WGSMRV-------IILVHLEYVPR 544
L + ++ ++F E+++ +Y ++ + +++E R
Sbjct: 70 TLLSKQEE-------MVQKF----VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 545 VSNDTTILFKKLGVPRLNYHLK 566
+ ND + F K V RL +LK
Sbjct: 119 LYNDNQV-FAKYNVSRLQPYLK 139
Score = 35.2 bits (80), Expect = 0.066
Identities = 79/598 (13%), Positives = 153/598 (25%), Gaps = 227/598 (37%)
Query: 60 LVQYFPPSSGISAPYIRGLEYLNILPPVQVKLSN---NDIITLKSELNGIEPIEITFQRM 116
++ F ++ + ++ + LS + II K ++G + T
Sbjct: 21 ILSVFED------AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74
Query: 117 HAKTSVALSPDFTEDKL-----WLNGKKLAEQEKSSREMADW---------------KMH 156
+ V F E+ L +L EQ + S + K +
Sbjct: 75 QEEM-VQ---KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 157 ICSENNFPTAAGLASSAAGYSCLVFTLAYALGLNTSEVSHIARQG---SG------SACR 207
+ L AL L ++ G SG C
Sbjct: 131 VSRLQ-----------------PYLKLRQAL-LELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 208 S-----MFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVND 262
S + W L + E + L+
Sbjct: 173 SYKVQCKMDFKIFWLNL------------KNCNSPETVLEMLQK-----------LLYQI 209
Query: 263 QAKSTSSTDGMQRTTLTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDSNQFH 322
TS +D L + + + L+++ +
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRL-----------LKSKPYEN------------- 245
Query: 323 ACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLENT----VP 378
CL +V + + V K F+ C +L T V
Sbjct: 246 --CL-----LV-LLN---------------VQNAKAWNAFNLS---C-KILLTTRFKQVT 278
Query: 379 LLLSTLVQYFPP----SSGISAPYIRGL--EYLNI----LPPVQLPSFTPQPAGLLQYLI 428
LS S ++ ++ L +YL+ LP ++ + P +I
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-EVLTTNP----RRLSII 333
Query: 429 STKIGSGPKILDDIPNNHLLNEAGAPKHLMFTLAYAL-GLNTSEVSHIARQGSGSACRSM 487
+ I G D+ H+ + L + +L L +E R M
Sbjct: 334 AESIRDGLATWDNWK--HVNCDK-----LTTIIESSLNVLEPAEY------------RKM 374
Query: 488 FGGFVRWKTLPEGQQSEGNGDIGRKQFEL-------SNAEQIISESY-------WGSMRV 533
F P + I L S+ ++++ +
Sbjct: 375 FDRLS---VFPP------SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 534 IIL--VHLEYVPRVSNDTTILFKKL----GVPR-------------------LNYHLK 566
I + ++LE ++ N+ L + + +P+ + +HLK
Sbjct: 426 ISIPSIYLELKVKLENEYA-LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop,
beta-alpha-beta, transferase; 2.40A {Methanocaldococcus
jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Length = 317
Score = 38.8 bits (91), Expect = 0.004
Identities = 35/238 (14%), Positives = 74/238 (31%), Gaps = 43/238 (18%)
Query: 87 VQVKLSNNDIITLKSELNGIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKKLAEQEKS 146
+++K + D I L + + + + + +F + K L K +
Sbjct: 39 IEIKETQEDEIILNLN-DLNKSLGLNLNEIKNINP----NNFGDFKYCLCAIKNTLDYLN 93
Query: 147 SREMADWKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLNTS--EVSHIARQGS-- 202
+K++I S P + GL SSA+ + ++ E++ +
Sbjct: 94 IEPKTGFKINISS--KIPISCGLGSSASITIGTIKAVSGFYNKELKDDEIAKLGYMVEKE 151
Query: 203 --GSACR-----SMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRV 255
G A + G + K ++ G + K C+
Sbjct: 152 IQGKASITDTSTITYKGILEIKNNK-FRKIKGEFEEFLKNCK------------------ 192
Query: 256 IILVVNDQAKSTSSTDGMQRTTLTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAEL 313
L+V + K T + + I + +EAL+ ++ F +L
Sbjct: 193 -FLIVYAE-KRKKKTAELVNEVAKIENKDEIFKEI--DKVI--DEALKIKNKEDFGKL 244
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes
thetaiotaomicron, protein structure initiative II(PSI
II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Length = 357
Score = 37.6 bits (87), Expect = 0.008
Identities = 31/176 (17%), Positives = 58/176 (32%), Gaps = 25/176 (14%)
Query: 155 MHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLNTS------EVSHIARQGSGSACRS 208
I + N+ P +GL +S+ C++ L L I R+ G +
Sbjct: 99 FKITTYNDAPAGSGLGTSSTMVVCILKAFIEWLSLPLGDYETSRLAYEIERKDLGLSGGK 158
Query: 209 M------FGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVND 262
FGGF + L + R + + + + G R ++N+
Sbjct: 159 QDQYAAAFGGFNYMEFLQNDLVIVNPLKMKRWIVDELESS--MVLYFTGRSRSSAAIINE 216
Query: 263 QAKSTSSTDGMQRTTLTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAELTMKDS 318
Q K+TS + + H++ + AL D FA + + +
Sbjct: 217 QKKNTSEGNQTAIEAM------HKIKQSAID----TKLALLKGDVGEFARI-LGEG 261
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC,
structural genomics, NEW YORK SGX research center for
structural genomics; HET: PGE; 2.10A {Listeria innocua}
Length = 365
Score = 36.9 bits (85), Expect = 0.014
Identities = 39/247 (15%), Positives = 71/247 (28%), Gaps = 34/247 (13%)
Query: 87 VQVKLSNNDIITLKSELNGIEPIEITFQRMHAKTSVALSPDFTEDKLWLNGKKLAEQ--E 144
+ ++ S + + + N + L PD +A +
Sbjct: 41 LTLEDSERNELWIPHYENPV----------SWPIGGELKPDGEHWTFTAEAINIATTFLK 90
Query: 145 KSSREMADWKMHICSE--NNFPTAAGLASSAAGYSCLVFTLAYALGLNTSE--------V 194
E+ KM I +E + GL SSAA ++ L S +
Sbjct: 91 SEGIELTPVKMVIETELIDQSGAKYGLGSSAAATVAVINALMTKFYPEISMLKKFKLAAL 150
Query: 195 SHIARQGSGS---ACRSMFGGFVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWG 251
SH+ QG+GS M+GG++ + T + + + E+
Sbjct: 151 SHLVVQGNGSCGDIASCMYGGWIAYTTFDQEWVKHRLAYKSLEWFMKEPWPMLQIETLEE 210
Query: 252 SMRVIILVVNDQAKSTSSTDGMQRTTLT--STLYE---HRVNTIVPSRCSGMEEALRARD 306
+ + ST S Y+ R N I+ + +A +D
Sbjct: 211 PVPTFSVGWTGTPVSTGKLVSQIHAFKQEDSKNYQHFLTRNNEIMKQ----IIQAFHTKD 266
Query: 307 FPRFAEL 313
Sbjct: 267 EELLYSS 273
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite,
transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Length = 332
Score = 36.6 bits (85), Expect = 0.016
Identities = 28/211 (13%), Positives = 62/211 (29%), Gaps = 42/211 (19%)
Query: 120 TSVALSPDFTEDKLWLNGKKLAEQEKSSREMADWKMHICSENNFPTAAGLASSAAGYSCL 179
A+ + + + +++ + + ++G+ +SA+
Sbjct: 63 QRPAIPGYIAQKRDEQIKAHQLVLDHLKVDLSGDGLKMFIGGPLVPSSGIGASASDVVAF 122
Query: 180 VFTLAYALGLNTS--EVSHIARQGS----GSACR-----SMFGGFVRWKTLPEGQQSDGN 228
L+ LN + EV+ A G G+ + +GG + ++
Sbjct: 123 SRALSELYQLNLTDEEVNLSAFVGEGGYHGTPSGADNTAATYGGLILYRR---------- 172
Query: 229 GDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAK-STSSTDGMQRTTLTS--TLYE- 284
+ + + R+ ++VV ST+ ++
Sbjct: 173 -----------QNGKSVFKPIAFQQRLYLVVVGTGINASTAKVVNDVHKMKQQQPVQFKR 221
Query: 285 --HRVNTIVPSRCSGMEEALRARDFPRFAEL 313
IV S EAL+ D R +L
Sbjct: 222 LYDNYTHIV----SQAREALQKGDLQRLGQL 248
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus
aureus}
Length = 308
Score = 35.9 bits (83), Expect = 0.032
Identities = 34/221 (15%), Positives = 61/221 (27%), Gaps = 43/221 (19%)
Query: 109 IEITFQRMHAKTSVALSPDFTEDKLWLNGKKLAEQEKSSREMAD----WKMHICSENNFP 164
I++ + + + ++ D + L+ L E+ + + I + N P
Sbjct: 39 IKVLIEALESGNYSSIKSDVYDGMLYDAPDHLKSLVNRFVELNNITEPLAVTIQT--NLP 96
Query: 165 TAAGLASSAAGYSCLV--FTLAYALGLNTSEVSHIARQG----SGSACRSM-----FGGF 213
+ GL SSAA V L E+ A G G
Sbjct: 97 PSRGLGSSAAVAVAFVRASYDFLGKSLTKEELIEKANWAEQIAHGKPSGIDTQTIVSGKP 156
Query: 214 VRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYWGSMRVIILVVNDQAK-STSSTDG 272
V + +AE + + S G ++V++ K ST
Sbjct: 157 VW--------------------FQKGHAETLKTLSLDGY----MVVIDTGVKGSTRQAVH 192
Query: 273 MQRTTLTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAEL 313
Y V I + + F A++
Sbjct: 193 DVHKLCEDPQYMSHVKHIG-KLVLRASDVIEHHKFEALADI 232
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6;
2.50A {Streptococcus pneumoniae}
Length = 292
Score = 34.3 bits (79), Expect = 0.093
Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 4/96 (4%)
Query: 108 PIEITFQRMHAKTSVALSPDFTEDKLWLNGKKLAEQEKSSREMADWKMHICSENNFPTAA 167
+ + + K A SP ++ L+ A E + A + I S P
Sbjct: 30 SLPLLEVEVTCKVVPAESPWRLYEEDTLSMAVYASLEYLNITEACIRCEIDS--AIPEKR 87
Query: 168 GLASSAAGYSCLVFTLAYALGLNTS--EVSHIARQG 201
G+ SSAA + + + + + +
Sbjct: 88 GMGSSAAISIAAIRAVFDYYQADLPHDVLEILVNRA 123
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative
homoserine kinase, THRB, amino-acid biosynthesis,
ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Length = 298
Score = 33.0 bits (76), Expect = 0.22
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 15/69 (21%)
Query: 156 HICSENNFPTAAGLASSAAGYSCLV--FTLAYALG---LNTSEVSHIARQGSG-----SA 205
H+ + P A GL SS+A +V LA L L+ E IA + G +
Sbjct: 73 HLVMTCDIPPARGLGSSSA---AVVAGIELANTLAELNLSKEEKVRIAAEIEGHPDNVAP 129
Query: 206 CRSMFGGFV 214
+ G +V
Sbjct: 130 A--VLGNWV 136
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 31.6 bits (71), Expect = 0.56
Identities = 6/21 (28%), Positives = 10/21 (47%), Gaps = 4/21 (19%)
Query: 16 WFYWDKKLNKESKKYYIEVAY 36
+WD SK YY++ +
Sbjct: 205 CTFWDA----ISKLYYVQFFF 221
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription
regulation, transcription; HET: GLA ATP; 2.10A
{Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Length = 520
Score = 30.9 bits (69), Expect = 1.4
Identities = 10/67 (14%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 137 GKKLAEQEKSSREMADWKMHICSENNFPTAAGLASSAA---GYSCLVFTLAYALGLNTSE 193
KK+A + ++ + ++ S + PT GL+S+ + + + ++ +
Sbjct: 132 LKKIAPERFNNTPLVGAQIFCQS--DIPTGGGLSSAFTCAAALATIRANMGKNFDISKKD 189
Query: 194 VSHIARQ 200
++ I
Sbjct: 190 LTRITAV 196
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET:
ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5
d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Length = 296
Score = 29.9 bits (68), Expect = 2.2
Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 17/73 (23%)
Query: 156 HICSENNFPTAAGLASSAAGYSCLV--FTLAYAL---GLNTSEVSHIARQGSGSACR--- 207
I + +GL SSAA L L+ ++ A G ++
Sbjct: 78 KITIKKGVKAGSGLGSSAA---SSAGTAYAINELFKLNLDKLKLVDYASYGELASSGAKH 134
Query: 208 ------SMFGGFV 214
++FGGF
Sbjct: 135 ADNVAPAIFGGFT 147
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national
project protein structural and functional analyses;
1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A*
1s4e_A*
Length = 350
Score = 29.6 bits (67), Expect = 2.7
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 8/63 (12%)
Query: 153 WKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLNTS--EVSHIARQGS----GSAC 206
K + N P AGL+SSA+ ++ TL L +A++ G C
Sbjct: 88 IKGRVSG--NLPLGAGLSSSASFEVGILETLDKLYNLKLDSLSKVLLAKKAENEFVGVPC 145
Query: 207 RSM 209
+
Sbjct: 146 GIL 148
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET:
NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Length = 478
Score = 29.9 bits (67), Expect = 2.8
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 153 WKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLNTS 192
+ N P ++GL+SS+A C LG N S
Sbjct: 150 MNCLVDG--NIPPSSGLSSSSALVCCAGLVTLTVLGRNLS 187
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 3.9
Identities = 10/44 (22%), Positives = 13/44 (29%), Gaps = 19/44 (43%)
Query: 7 EKIKIPKLSWFYWDKKLNKESKKYYIEVAYTFDAGP----NACL 46
EK + KKL K Y D+ P A +
Sbjct: 18 EKQAL---------KKLQASLKL------YADDSAPALAIKATM 46
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A
{Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB:
2r42_A* 2r3v_A
Length = 395
Score = 29.1 bits (64), Expect = 4.1
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 153 WKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLNTSEVSHIARQGSGS 204
+ + SE P AGL SSAA C+ L A T+ + GS
Sbjct: 129 LDIMVWSE--LPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWP 178
>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A
{Streptomyces lividans} SCOP: c.6.2.3
Length = 195
Score = 28.3 bits (64), Expect = 4.8
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 7/31 (22%)
Query: 357 KVAYTFDAGPNACLYVLENTVPLLLSTLVQY 387
V TFD GP+ +T LL+ L Q
Sbjct: 6 YVGLTFDDGPS------GST-QSLLNALRQN 29
Score = 28.3 bits (64), Expect = 5.5
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 7/31 (22%)
Query: 33 EVAYTFDAGPNACLYVLENTVPLLLSTLVQY 63
V TFD GP+ +T LL+ L Q
Sbjct: 6 YVGLTFDDGPS------GST-QSLLNALRQN 29
>2l25_A Uncharacterized protein; JCSG, structural genomics, PSI-biology,
protein structure in joint center for structural
genomics; NMR {Bordetella bronchiseptica}
Length = 141
Score = 27.9 bits (61), Expect = 5.4
Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 12/91 (13%)
Query: 355 ETKVAYTFDAGPNACLYVLENTVPLLLSTLVQYFPPSSGISAPYIRGLEYLNILPPVQLP 414
E +++ A A +N ++ PP++G Y+R
Sbjct: 12 EKRLSDWAKARTPALPVAWQN---------TKFTPPAAG---VYLRAYVMPAATISRDAA 59
Query: 415 SFTPQPAGLLQYLISTKIGSGPKILDDIPNN 445
Q G+ Q + IG G + + +
Sbjct: 60 GDHRQYRGVFQVNVVMPIGDGSRSAEQVAAE 90
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA;
2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Length = 419
Score = 28.6 bits (64), Expect = 6.4
Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 22/109 (20%)
Query: 87 VQVKLSNNDIITLKSE-LNGIEPIEITFQRMHAKTSVALSPDFTEDKLWLN---GKKLAE 142
+L + + L SE + IE + + +LW N G +
Sbjct: 82 GLARLREDKKVKLYSENFPKLGVIEFDLD----------EVEKKDGELWSNYVKGMIVML 131
Query: 143 QEKSSREMADWKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLNT 191
+ +++ I PTA+GL+SSA+ L + L+
Sbjct: 132 KGAGYEIDKGFELLIKG--EIPTASGLSSSAS------LELLVGVVLDD 172
>2iw0_A Chitin deacetylase; hydrolase, chitin DE-N-acetylase, family 4
carbohydrate ESTE; 1.81A {Colletotrichum lindemuthianum}
SCOP: c.6.2.3
Length = 254
Score = 27.8 bits (62), Expect = 8.3
Identities = 17/73 (23%), Positives = 20/73 (27%), Gaps = 7/73 (9%)
Query: 315 MKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYVLE 374
M S F A + + V VA T+D GP
Sbjct: 1 MHFSTLFGAAATAALAGSTNASPLARRQVPVGTPILQCTQPGLVALTYDDGPF------T 54
Query: 375 NTVPLLLSTLVQY 387
T P LL L Q
Sbjct: 55 FT-PQLLDILKQN 66
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,478,697
Number of extensions: 497362
Number of successful extensions: 935
Number of sequences better than 10.0: 1
Number of HSP's gapped: 910
Number of HSP's successfully gapped: 49
Length of query: 566
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 467
Effective length of database: 3,937,614
Effective search space: 1838865738
Effective search space used: 1838865738
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.4 bits)