RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11141
         (566 letters)



>d1fi4a2 d.58.26.2 (A:191-393) Mevalonate 5-diphosphate
           decarboxylase {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 203

 Score =  218 bits (556), Expect = 2e-68
 Identities = 76/202 (37%), Positives = 107/202 (52%), Gaps = 8/202 (3%)

Query: 253 MRVIILVVNDQAKSTSSTDGMQRTTLTSTLYEHRVNTIVPSRCSGMEEALRARDFPRFAE 312
           M+  +LVV+D  K  SST GMQ T  TS L++ R+  +VP R   M +A+  +DF  FA+
Sbjct: 2   MKACVLVVSDIKKDVSSTQGMQLTVATSELFKERIEHVVPKRFEVMRKAIVEKDFATFAK 61

Query: 313 LTMKDSNQFHACCLDTYPPIVYMNDTSHSIVRFVHEFNTVVGETKVAYTFDAGPNACLYV 372
            TM DSN FHA CLD++PPI YMNDTS  I+ + H  N   GET VAYTFDAGPNA LY 
Sbjct: 62  ETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQFYGETIVAYTFDAGPNAVLYY 121

Query: 373 LENTVPLLLSTLVQYFPPSSG----ISAPYIRGLEYLNILPPVQLPSFTPQPAGLLQYLI 428
           L      L + + + F    G     +   +    +              +    +  +I
Sbjct: 122 LAENESKLFAFIYKLFGSVPGWDKKFTTEQLEAFNHQFESSNFTARELDLELQKDVARVI 181

Query: 429 STKIGSGPKILDDIPNNHLLNE 450
            T++GSGP+  ++     L++ 
Sbjct: 182 LTQVGSGPQETNE----SLIDA 199



 Score = 56.7 bits (137), Expect = 7e-10
 Identities = 23/108 (21%), Positives = 35/108 (32%), Gaps = 14/108 (12%)

Query: 15  SWFYWD----------KKLNKESKKYYIEVAYTFDAGPNACLYVLENTVPLLLSTLVQYF 64
             FY +            +N+   +    VAYTFDAGPNA LY L      L + + + F
Sbjct: 80  PIFYMNDTSKRIISWCHTINQFYGE--TIVAYTFDAGPNAVLYYLAENESKLFAFIYKLF 137

Query: 65  PPSSGISAPYIRGLEYLNILPPVQVKLSNNDIITLKSELNGIEPIEIT 112
               G    +    E L          +             +  + +T
Sbjct: 138 GSVPGWDKKF--TTEQLEAFNHQFESSNFTARELDLELQKDVARVILT 183


>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 188

 Score =  126 bits (317), Expect = 2e-34
 Identities = 65/158 (41%), Positives = 84/158 (53%), Gaps = 35/158 (22%)

Query: 116 MHAKTSVALSPDFTEDKLWLNG---------------------KKLAEQEKSSREMADWK 154
           +   TS A +P+F  D LWLNG                     K++  ++ S   ++ WK
Sbjct: 42  LRTLTSAATAPEFERDTLWLNGEPHSIDNERTQNCLRDLRQLRKEMESKDASLPTLSQWK 101

Query: 155 MHICSENNFPTAAGLASSAAGYSCLVFTL--AYALGLNTSEVSHIARQGSGSACRSMFGG 212
           +HI SENNFPTAAGLASSAAG++ LV  +   Y L  +TSE+S IAR+GSGSACRS+FGG
Sbjct: 102 LHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEISRIARKGSGSACRSLFGG 161

Query: 213 FVRWKTLPEGQQSDGNGDIGRKQCELSNAEQIISESYW 250
           +V W+        D            S A QI   S W
Sbjct: 162 YVAWEMGKAEDGHD------------SMAVQIADSSDW 187



 Score = 63.1 bits (153), Expect = 4e-12
 Identities = 29/72 (40%), Positives = 36/72 (50%), Gaps = 12/72 (16%)

Query: 457 LMFTLAYALGLNTSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSEGNGDIGRKQFEL 516
                 Y L  +TSE+S IAR+GSGSACRS+FGG+V W+         G  + G      
Sbjct: 128 SAIAKLYQLPQSTSEISRIARKGSGSACRSLFGGYVAWE--------MGKAEDGHDSM-- 177

Query: 517 SNAEQIISESYW 528
             A QI   S W
Sbjct: 178 --AVQIADSSDW 187


>d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 163

 Score = 32.4 bits (73), Expect = 0.061
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 11/74 (14%)

Query: 152 DWKMHICSENNFPTAAGLASSAAGYSCLVFTLAYALGLNTS--EVSHIARQGSGSACR-- 207
              + I  +      +GL SSAA  +   + +     LN    ++   A  G  ++    
Sbjct: 74  GKGVKITIKKGVKAGSGLGSSAASSAGTAYAINELFKLNLDKLKLVDYASYGELASSGAK 133

Query: 208 -------SMFGGFV 214
                  ++FGGF 
Sbjct: 134 HADNVAPAIFGGFT 147


>d1icha_ a.77.1.2 (A:) Tumor necrosis factor receptor-1 death domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 87

 Score = 28.7 bits (64), Expect = 0.49
 Identities = 6/49 (12%), Positives = 14/49 (28%), Gaps = 6/49 (12%)

Query: 460 TLAYALGLNTSEVSHIARQGSGSACRSMFGGFVRWKTLPEGQQSEGNGD 508
                LGL+  E+  +  Q       + +     W+      +     +
Sbjct: 18  EFVKRLGLSDHEIDRLELQNGRCLREAQYSMLATWR------RRTPRRE 60



 Score = 28.3 bits (63), Expect = 0.72
 Identities = 6/36 (16%), Positives = 12/36 (33%)

Query: 182 TLAYALGLNTSEVSHIARQGSGSACRSMFGGFVRWK 217
                LGL+  E+  +  Q       + +     W+
Sbjct: 18  EFVKRLGLSDHEIDRLELQNGRCLREAQYSMLATWR 53


>d1hh2p1 b.40.4.5 (P:127-198) S1 domain of NusA {Thermotoga maritima
           [TaxId: 2336]}
          Length = 72

 Score = 26.5 bits (59), Expect = 1.9
 Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 5/48 (10%)

Query: 223 QQSDGNG---DIGRKQCELSNAEQIISESYW--GSMRVIILVVNDQAK 265
            +  G      IG+ +  L   E I  E       ++V I+ V    K
Sbjct: 17  IRVMGEWADIRIGKLETRLPKKEWIPGEEIKAGDLVKVYIIDVVKTTK 64


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0609    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,078,653
Number of extensions: 95274
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 8
Length of query: 566
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 476
Effective length of database: 1,171,896
Effective search space: 557822496
Effective search space used: 557822496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.2 bits)