BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11143
(940 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 154 bits (390), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 115/421 (27%), Positives = 186/421 (44%), Gaps = 18/421 (4%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNA---PPIFIQRPVSTTYSTG 60
+ + LVI+ V G Y+C A N G + + PP F ++ + G
Sbjct: 57 KNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLG 116
Query: 61 STSRITCLVEGHPLPQMTWFHDGNSL--DSDDHVTYEHDGFVLVLNGVRESDAGVYNCVA 118
C + G Q++W+ DG L D++ ++ H+ L + +S G YNC A
Sbjct: 117 FPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSA 176
Query: 119 QNSEGSAESVAMIRINGHRAPRLV-VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEA 177
N G+A S A + ++ H P +KP + G S C G +I+W+KD
Sbjct: 177 SNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNR 236
Query: 178 EFVEDRNHK---IHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQ 234
E N+K + T +L + + D+G Y C ASN+ G+D L V PP FI+
Sbjct: 237 EIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ-EPPRFIK 295
Query: 235 R-PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLD--SDDHVTYEHDGFVLVLNGVR 291
+ S +R C + G P ++ W+ D + S +++ VL + +
Sbjct: 296 KLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLS 355
Query: 292 ESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPL 351
D+G Y C A N+ GSA S +++ P KP + G+ V + C+ G P
Sbjct: 356 VEDSGDYTCEAHNAAGSASSSTSLKVK--EPPVFRKKPHPVETLKGADVHLECELQGTPP 413
Query: 352 PRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT 408
++SW KD+ E + +KI S+ + N+ D G Y+C ASN +G D G +T
Sbjct: 414 FQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSIT 473
Query: 409 V 409
+
Sbjct: 474 L 474
Score = 142 bits (359), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 112/416 (26%), Positives = 169/416 (40%), Gaps = 22/416 (5%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVN---APPIFIQRPVSTTYSTGSTSRIT 66
L I + H G+Y+C A NP G +T++ PP F +PVS + G +
Sbjct: 159 LQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFK 218
Query: 67 CLVEGHPLPQMTWFHDGNSL--DSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 124
C V G ++TW D + + +T + L + V + DAG Y C A N G
Sbjct: 219 CHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGK 278
Query: 125 AESVAMIRINGHRAPRLVVKPFDMR-APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDR 183
A + + PR + K R CK G P ++ W KDE E E
Sbjct: 279 DSCSAQLGV--QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESS 336
Query: 184 NHK---IHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTT 240
+ + L +YN+ +DSG Y C A N G + L V PP+F ++P
Sbjct: 337 KFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK-EPPVFRKKPHPVE 395
Query: 241 YSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVL---VLNGVRESDAGV 297
G+ + C ++G P Q++W D L S + F+ +LN V +D G
Sbjct: 396 TLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILN-VDSADIGE 454
Query: 298 YNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWS 357
Y C A N GS V I + PR V K D+ G V++ +G ++W
Sbjct: 455 YQCKASNDVGSDTCVGSITLKA--PPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWF 512
Query: 358 KDEAEFVEDRNH----KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
KD+ E V + ++ +L+ P ++G Y C N G L+V
Sbjct: 513 KDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSV 568
Score = 141 bits (356), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 106/367 (28%), Positives = 160/367 (43%), Gaps = 18/367 (4%)
Query: 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD--HVTYEHDGFVLV 102
PP FI+ + G + C V+G P ++ W+ + L S + ++++ LV
Sbjct: 5 PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLV 64
Query: 103 LNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRA-PRLVVKPFDMRAPAGSSVEIPCK 161
+N V SD G Y C A+NS G+ S A++ I + P K D+ G V C+
Sbjct: 65 INKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECR 124
Query: 162 PDG-EPLPRISWSKDEAEFVEDRNHK---IHRTGSLRLYNIGPQDSGLYRCTASNLLGED 217
+G EPL ++SW KD +D N + IH +L++ G Y C+ASN LG
Sbjct: 125 INGSEPL-QVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTA 183
Query: 218 VAEGYLTVT--GAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL--DSD 273
+ LT++ PP F +PVS + G + C V G ++TW D + +
Sbjct: 184 SSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGN 243
Query: 274 DHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMR 333
+T + L + V + DAG Y C A N G A + + PR + K R
Sbjct: 244 YKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV--QEPPRFIKKLEPSR 301
Query: 334 -APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHK---IHRTGSLRLYNIGPQDSGL 389
CK G P ++ W KDE E E + + L +YN+ +DSG
Sbjct: 302 IVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGD 361
Query: 390 YRCTASN 396
Y C A N
Sbjct: 362 YTCEAHN 368
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 146/322 (45%), Gaps = 12/322 (3%)
Query: 5 RSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQR-PVSTTYSTGSTS 63
++ L + V + G+Y+C A N AG + V PP FI++ S +
Sbjct: 250 ENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHT 309
Query: 64 RITCLVEGHPLPQMTWFHDGNSLD--SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNS 121
R C + G P ++ W+ D + S +++ VL + + D+G Y C A N+
Sbjct: 310 RYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNA 369
Query: 122 EGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVE 181
GSA S +++ P KP + G+ V + C+ G P ++SW KD+ E
Sbjct: 370 AGSASSSTSLKVK--EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRS 427
Query: 182 DRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVS 238
+ +KI S+ + N+ D G Y+C ASN +G D G +T+ APP F+++
Sbjct: 428 GKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLK-APPRFVKKLSD 486
Query: 239 TTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL--DSDD-HVTYEHDGFVLVLNGVRESDA 295
+ G ++ +EG + WF D + +SD+ ++Y + L + ++A
Sbjct: 487 ISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANA 546
Query: 296 GVYNCVAQNSEGSAESVAMIRI 317
G Y C +N G+ E A + +
Sbjct: 547 GKYTCQIKNEAGTQECFATLSV 568
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 149 bits (376), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 111/413 (26%), Positives = 180/413 (43%), Gaps = 30/413 (7%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTS 63
++ S L+I E G+Y CV N G + +TV AP P + T G +
Sbjct: 302 KQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPA 361
Query: 64 RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG 123
TC G+P+ ++W DG ++ H VL + V++ D G+Y C +N
Sbjct: 362 VFTCQYTGNPIKTVSWMKDGKAIG--------HSESVLRIESVKKEDKGMYQCFVRNDRE 413
Query: 124 SAESVAMIRINGHRAPRLVVKPF-DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED 182
SAE+ A +++ G P ++ + F + G SV + C G P P ISW D + +
Sbjct: 414 SAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANN 473
Query: 183 RNHKIHR--------TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQ 234
+++ + L + ++ D GLY+C A + +G L V G P +I+
Sbjct: 474 DRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLP--YIR 531
Query: 235 RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESD 294
+ G T +TC V G+P+ + W D +L + +G +++ N R SD
Sbjct: 532 QMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSD 591
Query: 295 AGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMR---APAGSSVEIPCKPDGEPL 351
Y CVA+N EG + + + + PR++ PF A G + + C G L
Sbjct: 592 QATYTCVAKNQEGYS-ARGSLEVQVMVLPRII--PFAFEEGPAQVGQYLTLHCSVPGGDL 648
Query: 352 P-RISWSKDEAEFVED---RNHKIHRTGS-LRLYNIGPQDSGLYRCTASNLLG 399
P I W+ D ED ++ R GS L + + +G + C A NL G
Sbjct: 649 PLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAG 701
Score = 134 bits (336), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 113/426 (26%), Positives = 181/426 (42%), Gaps = 39/426 (9%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNA---PPIFIQRPVSTTYSTGST 62
S + L I V++E G Y C N + + PP+ Q T G +
Sbjct: 387 SESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPS 446
Query: 63 SRITCLVEGHPLPQMTWFHDGNSLDSDD------HVTYEHDGF-VLVLNGVRESDAGVYN 115
+ C+ G+P P+++W DG + ++D +VT D L + V +D G+Y
Sbjct: 447 VFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYK 506
Query: 116 CVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD 175
C+A++ G AE A + + G R + K + AG ++ + C G P+ I W +D
Sbjct: 507 CIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIV---AGETLIVTCPVAGYPIDSIVWERD 563
Query: 176 EAEFVEDRNHKIHRTGSLRLYNIG-PQDSGLYRCTASNLLGEDVAEGYLTVTGA------ 228
+R K+ G+L + N+ D Y C A N G A G L V
Sbjct: 564 NRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYS-ARGSLEVQVMVLPRII 622
Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEH---DGFV 284
P F + P G + C V G LP + W DG ++ D +T G V
Sbjct: 623 PFAFEEGPAQV----GQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSV 678
Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC 344
L + V S AG + C A+N G + +N + PR +++P D GS ++ C
Sbjct: 679 LTIEAVEASHAGNFTCHARNLAGHQQFTT--PLNVYVPPRWILEPTDKAFAQGSDAKVEC 736
Query: 345 KPDGEPLPRISWSK-------DEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNL 397
K DG P P+++W K + + + N ++ G+L + NI + G Y C A N
Sbjct: 737 KADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEE-GTLHVDNIQKTNEGYYLCEAING 795
Query: 398 LGEDVA 403
+G ++
Sbjct: 796 IGSGLS 801
Score = 119 bits (298), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 98/370 (26%), Positives = 159/370 (42%), Gaps = 31/370 (8%)
Query: 56 TYSTGSTSRITCLVEGHPLPQMTW--FHDGNSLDS----DDHVTYEHDGFVLVLNGVRES 109
TYS ST + C +G+P+P W F +G + +D V + G +++ + V E
Sbjct: 259 TYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVK-QVSGTLIIKDAVVE- 316
Query: 110 DAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPR 169
D+G Y CV NS G ++ + + + + P G C+ G P+
Sbjct: 317 DSGKYLCVVNNSVGGESVETVLTVTAPLSAK--IDPPTQTVDFGRPAVFTCQYTGNPIKT 374
Query: 170 ISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGA- 228
+SW KD H LR+ ++ +D G+Y+C N A L + G
Sbjct: 375 VSWMKDGKAIG-------HSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRF 427
Query: 229 -PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD------HVTYEHD 281
PP+ Q T G + + C+ G+P P+++W DG + ++D +VT D
Sbjct: 428 DPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGD 487
Query: 282 GF-VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSV 340
L + V +D G+Y C+A++ G AE A + + G R + K + AG ++
Sbjct: 488 VVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIV---AGETL 544
Query: 341 EIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIG-PQDSGLYRCTASNLLG 399
+ C G P+ I W +D +R K+ G+L + N+ D Y C A N G
Sbjct: 545 IVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEG 604
Query: 400 EDVAEGYLTV 409
A G L V
Sbjct: 605 YS-ARGSLEV 613
Score = 117 bits (293), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 117/475 (24%), Positives = 199/475 (41%), Gaps = 61/475 (12%)
Query: 16 QREHGGRYSCVAGNPAG-VYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPL 74
Q H Y+C+A N G + D+HV + G+++ I CL+
Sbjct: 108 QEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSF-- 165
Query: 75 PQMTWFHDGNSLDSDDHVTY----EHDGFVLVLNG----VRE----SDAGVYNCVAQNS- 121
+ F + S +D+ Y E+DG LVL +RE Y C ++
Sbjct: 166 --VADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRL 223
Query: 122 ------EGSAESVAMIRINGHRAPRLV-VKPFDMRAPAGSS-VEIPCKPDGEPLPRISWS 173
+ + + P++V + FDM+ +GSS + + C G P+P W
Sbjct: 224 TGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWY 283
Query: 174 K-------DEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 226
K +A + DR ++ +G+L + + +DSG Y C +N +G + E LTVT
Sbjct: 284 KFIEGTTRKQAVVLNDRVKQV--SGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT 341
Query: 227 GAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLV 286
AP P + T G + TC G+P+ ++W DG ++ H VL
Sbjct: 342 -APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIG--------HSESVLR 392
Query: 287 LNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPF-DMRAPAGSSVEIPCK 345
+ V++ D G+Y C +N SAE+ A +++ G P ++ + F + G SV + C
Sbjct: 393 IESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCV 452
Query: 346 PDGEPLPRISWSKDEAEFVEDRNHKIHR--------TGSLRLYNIGPQDSGLYRCTASNL 397
G P P ISW D + + +++ + L + ++ D GLY+C A +
Sbjct: 453 AGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSK 512
Query: 398 LGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVKLASREVDAAV 452
+G L V G P+ + K VA +T+ + +A +D+ V
Sbjct: 513 VGVAEHSAKLNVYG------LPYIRQ--MEKKAIVAGETLIVTCPVAGYPIDSIV 559
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/326 (27%), Positives = 142/326 (43%), Gaps = 23/326 (7%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLV 69
L I+ V GG Y C+A + GV + V P +I++ G T +TC V
Sbjct: 492 LNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLP-YIRQMEKKAIVAGETLIVTCPV 550
Query: 70 EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVA 129
G+P+ + W D +L + +G +++ N R SD Y CVA+N EG + +
Sbjct: 551 AGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYS-ARG 609
Query: 130 MIRINGHRAPRLVVKPFDMR---APAGSSVEIPCKPDGEPLP-RISWSKDEAEFVED--- 182
+ + PR++ PF A G + + C G LP I W+ D ED
Sbjct: 610 SLEVQVMVLPRII--PFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGI 667
Query: 183 RNHKIHRTGS-LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTY 241
++ R GS L + + +G + C A NL G L V PP +I P +
Sbjct: 668 TTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVY-VPPRWILEPTDKAF 726
Query: 242 STGSTSRITCLVEGHPLPQMTWFH-------DGNSLDSDDHVTYEHDGFVLVLNGVRESD 294
+ GS +++ C +G P PQ+TW + L D++ E L ++ +++++
Sbjct: 727 AQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEG--TLHVDNIQKTN 784
Query: 295 AGVYNCVAQNSEGSAES-VAMIRING 319
G Y C A N GS S V MI +
Sbjct: 785 EGYYLCEAINGIGSGLSAVIMISVQA 810
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 97/386 (25%), Positives = 160/386 (41%), Gaps = 49/386 (12%)
Query: 46 PIFIQRPVSTT-YSTGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEHDGFVLVL 103
P+F++ P + +S + + I C G+P+P++ W DG ++ + LV
Sbjct: 39 PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVF 98
Query: 104 NGVRESD------AGVYNCVAQNSEGS--AESVAMIRINGHRAPRLVVKPFDMRAPAGSS 155
R D A VY C+A+N GS + V + + V K +R G+S
Sbjct: 99 PPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIR---GNS 155
Query: 156 VEIPCK-PD--GEPLPRISWSKDEAEFV-----EDRNHKIHRTGSLRLYNIGPQDS-GLY 206
I C P + + +SW DE E D + + +G L + +GP+D Y
Sbjct: 156 AVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSY 215
Query: 207 RC-TASNLLGE---DVAEGYLTVTGAPPIFIQRPVS------TTYSTGSTSRITCLVEGH 256
+C T L GE +G L +T + + VS TYS ST + C +G+
Sbjct: 216 QCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGY 275
Query: 257 PLPQMTW--FHDGNSLDS----DDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE 310
P+P W F +G + +D V + G +++ + V E D+G Y CV NS G
Sbjct: 276 PVPVFRWYKFIEGTTRKQAVVLNDRVK-QVSGTLIIKDAVVE-DSGKYLCVVNNSVGGES 333
Query: 311 SVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHK 370
++ + + + + P G C+ G P+ +SW KD
Sbjct: 334 VETVLTVTAPLSAK--IDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIG------ 385
Query: 371 IHRTGSLRLYNIGPQDSGLYRCTASN 396
H LR+ ++ +D G+Y+C N
Sbjct: 386 -HSESVLRIESVKKEDKGMYQCFVRN 410
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 10/139 (7%)
Query: 5 RSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSR 64
R + L I V+ H G ++C A N AG + + V PP +I P ++ GS ++
Sbjct: 674 RRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAK 733
Query: 65 ITCLVEGHPLPQMTWFH-------DGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCV 117
+ C +G P PQ+TW + L D++ E L ++ +++++ G Y C
Sbjct: 734 VECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEG--TLHVDNIQKTNEGYYLCE 791
Query: 118 AQNSEGSAES-VAMIRING 135
A N GS S V MI +
Sbjct: 792 AINGIGSGLSAVIMISVQA 810
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 85/368 (23%), Positives = 142/368 (38%), Gaps = 44/368 (11%)
Query: 154 SSVEIPCKPDGEPLPRISWSKDEAEFVEDRN--HKIHRTGSLRLYNIGPQD------SGL 205
+ EI CK G P+P I W + + V D +I G L +D + +
Sbjct: 55 TGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQV 114
Query: 206 YRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYST-GSTSRITCLVEGHPLPQMTWF 264
Y C A N G ++ + V + + V+ + G+++ I CL+ + F
Sbjct: 115 YACLARNQFGSIISRD-VHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSF----VADF 169
Query: 265 HDGNSLDSDDHVTY----EHDGFVLVLNG----VR----ESDAGVYNCVAQNS------- 305
+ S +D+ Y E+DG LVL +R E Y C ++
Sbjct: 170 VEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRL 229
Query: 306 EGSAESVAMIRINGHRAPRLV-VKPFDMRAPAGSS-VEIPCKPDGEPLPRISWSK----- 358
+ + + P++V + FDM+ +GSS + + C G P+P W K
Sbjct: 230 SATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGT 289
Query: 359 --DEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVE 416
+A + DR ++ +G+L + + +DSG Y C +N +G + E LTVT S +
Sbjct: 290 TRKQAVVLNDRVKQV--SGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAK 347
Query: 417 PAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVNATINSLFGYHSNEQQDHGSLMKL 476
P T +K S D S+ S +++D G
Sbjct: 348 IDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCF 407
Query: 477 LRFPDESA 484
+R ESA
Sbjct: 408 VRNDRESA 415
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 119 bits (298), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 91/382 (23%), Positives = 158/382 (41%), Gaps = 26/382 (6%)
Query: 48 FIQRPVSTTYSTGSTSRITCLVEG-HPLPQMTWFHDGN--SLDSDDHVTYEHDGFVLVLN 104
F+ P G + C E +P + W DG +L DD +G +L+ N
Sbjct: 24 FVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQN 83
Query: 105 GVR----ESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC 160
+ + D G+Y C A + + ++ R + + + A G +V + C
Sbjct: 84 ILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKC 143
Query: 161 KPDGEPLPRISWSKDEAEFVE---DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 217
+ G+P+P I W K++ + D + +G+L++ + P DSG+YRC+A N
Sbjct: 144 EVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTR 203
Query: 218 VA-EGYLTVTGAPPI-----FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLD 271
E + + P + F+QRP + G + + C V G+P P TW +
Sbjct: 204 TGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQ 263
Query: 272 SDDHVTYEHDGFVLVLNGVRESDAGVYNCVA----QNSEGSAESVAMIRINGHRAPRLVV 327
G L+++ V + D+G Y CV +N SAE ++ P +
Sbjct: 264 LRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLV------PPWFLN 317
Query: 328 KPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDS 387
P ++ A +E C G+P+P ++W K+ + +I +LR+ + D
Sbjct: 318 HPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDE 377
Query: 388 GLYRCTASNLLGEDVAEGYLTV 409
G Y+C A N G + L V
Sbjct: 378 GFYQCVAENEAGNAQSSAQLIV 399
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 95/230 (41%), Gaps = 17/230 (7%)
Query: 7 STELVISGVQREHGGRYSCVAGNPAGVYRG-DLHVTVNAPP------IFIQRPVSTTYST 59
S L IS +Q G Y C A NPA G + V + + P F+QRP +
Sbjct: 176 SGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIE 235
Query: 60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVA- 118
G + + C V G+P P TW + G L+++ V + D+G Y CV
Sbjct: 236 GKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVT 295
Query: 119 ---QNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD 175
+N SAE ++ P + P ++ A +E C G+P+P ++W K+
Sbjct: 296 YKNENISASAELTVLV------PPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKN 349
Query: 176 EAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
+ +I +LR+ + D G Y+C A N G + L V
Sbjct: 350 GDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIV 399
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 117 bits (292), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 103/394 (26%), Positives = 170/394 (43%), Gaps = 42/394 (10%)
Query: 46 PIFIQRPVSTTY---STGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH-DGFVL 101
P+F+Q P + S +++C V+G+P P + W +G +D Y DG +L
Sbjct: 5 PVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLL 64
Query: 102 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRL---VVKPFDMRAPAGSSVE- 157
+ N + DAG Y C+A NS G+ S R +L ++ F R + SV
Sbjct: 65 INNPNKTQDAGTYQCIATNSFGTIVS---------REAKLQFAYLENFKTRTRSTVSVRR 115
Query: 158 -----IPCKP---DGEPLPRISWSKDE-AEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRC 208
+ C P GE +W +E + ++R TG+L + + D G Y C
Sbjct: 116 GQGMVLLCGPPPHSGE--LSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTC 173
Query: 209 TASNLLGEDVAEGYLT--------VTG--APPIFIQRPVSTTYSTGSTSRITCLVEGHPL 258
+N + G T V G P I +Q P + G+T ++ C G+P+
Sbjct: 174 VVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPV 233
Query: 259 PQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 318
P + W + ++ +G + + N ++ DAG Y CVA+NS G ++VA ++
Sbjct: 234 PTILWRRADGKPIARKARRHKSNGILEIPN-FQQEDAGSYECVAENSRG--KNVAKGQLT 290
Query: 319 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLR 378
+ P V D+ SV CK +G P P W K+ + +I + G+L
Sbjct: 291 FYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQ-GTLN 349
Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGE 412
+ + D+G+Y+C A N G + L+V E
Sbjct: 350 ITIVNLSDAGMYQCVAENKHGVIFSSAELSVIAE 383
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 107/239 (44%), Gaps = 19/239 (7%)
Query: 2 DDRRSSTE----LVISGVQREHGGRYSCVAGNPAG-----------VYRGDLHVTVNAPP 46
D+RR ++ L I+ V++ G Y+CV N + R D + P
Sbjct: 146 DNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPK 205
Query: 47 IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGV 106
I +Q P + G+T ++ C G+P+P + W + ++ +G + + N
Sbjct: 206 IEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPN-F 264
Query: 107 RESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEP 166
++ DAG Y CVA+NS G ++VA ++ + P V D+ SV CK +G P
Sbjct: 265 QQEDAGSYECVAENSRG--KNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRP 322
Query: 167 LPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
P W K+ + +I + G+L + + D+G+Y+C A N G + L+V
Sbjct: 323 KPTYRWLKNGDPLLTRDRIQIEQ-GTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 380
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 116 bits (291), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 103/394 (26%), Positives = 170/394 (43%), Gaps = 42/394 (10%)
Query: 46 PIFIQRPVSTTY---STGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH-DGFVL 101
P+F+Q P + S +++C V+G+P P + W +G +D Y DG +L
Sbjct: 6 PVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLL 65
Query: 102 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRL---VVKPFDMRAPAGSSVE- 157
+ N + DAG Y C+A NS G+ S R +L ++ F R + SV
Sbjct: 66 INNPNKTQDAGTYQCIATNSFGTIVS---------REAKLQFAYLENFKTRTRSTVSVRR 116
Query: 158 -----IPCKP---DGEPLPRISWSKDE-AEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRC 208
+ C P GE +W +E + ++R TG+L + + D G Y C
Sbjct: 117 GQGMVLLCGPPPHSGE--LSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTC 174
Query: 209 TASNLLGEDVAEGYLT--------VTG--APPIFIQRPVSTTYSTGSTSRITCLVEGHPL 258
+N + G T V G P I +Q P + G+T ++ C G+P+
Sbjct: 175 VVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPV 234
Query: 259 PQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 318
P + W + ++ +G + + N ++ DAG Y CVA+NS G ++VA ++
Sbjct: 235 PTILWRRADGKPIARKARRHKSNGILEIPN-FQQEDAGSYECVAENSRG--KNVAKGQLT 291
Query: 319 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLR 378
+ P V D+ SV CK +G P P W K+ + +I + G+L
Sbjct: 292 FYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQ-GTLN 350
Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGE 412
+ + D+G+Y+C A N G + L+V E
Sbjct: 351 ITIVNLSDAGMYQCVAENKHGVIFSSAELSVIAE 384
Score = 82.8 bits (203), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 107/239 (44%), Gaps = 19/239 (7%)
Query: 2 DDRRSSTE----LVISGVQREHGGRYSCVAGNPAG-----------VYRGDLHVTVNAPP 46
D+RR ++ L I+ V++ G Y+CV N + R D + P
Sbjct: 147 DNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPK 206
Query: 47 IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGV 106
I +Q P + G+T ++ C G+P+P + W + ++ +G + + N
Sbjct: 207 IEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPN-F 265
Query: 107 RESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEP 166
++ DAG Y CVA+NS G ++VA ++ + P V D+ SV CK +G P
Sbjct: 266 QQEDAGSYECVAENSRG--KNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRP 323
Query: 167 LPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
P W K+ + +I + G+L + + D+G+Y+C A N G + L+V
Sbjct: 324 KPTYRWLKNGDPLLTRDRIQIEQ-GTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381
>pdb|3F9P|C Chain C, Crystal Structure Of Myeloperoxidase From Human Leukocytes
pdb|3F9P|D Chain D, Crystal Structure Of Myeloperoxidase From Human Leukocytes
pdb|3ZS0|C Chain C, Human Myeloperoxidase Inactivated By Tx2
pdb|3ZS0|D Chain D, Human Myeloperoxidase Inactivated By Tx2
pdb|3ZS1|C Chain C, Human Myeloperoxidase Inactivated By Tx5
pdb|3ZS1|D Chain D, Human Myeloperoxidase Inactivated By Tx5
Length = 467
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 70/112 (62%)
Query: 519 LGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAVSLDLAAM 578
L + FF+ WR+V EGG+DP+LRG + +PAK R + E+ ++LF + LDL A+
Sbjct: 249 LSRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIAVDEIRERLFEQVMRIGLDLPAL 308
Query: 579 NIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHPG 630
N+QR RDHG+P YNAWR +CGLP+ T L + + ++ KL YG P
Sbjct: 309 NMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPN 360
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 7/94 (7%)
Query: 771 GRVGPTMRCL-----LIDQFKRIRDGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRI 825
G++G +R L L++Q+ NID ++G + E GRVGP + C++ QF+++
Sbjct: 337 GQLGTVLRNLKLARKLMEQYGT--PNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKL 394
Query: 826 RDGDRFWYENPSTFKPAQLTQIKQASLARVICDS 859
RDGDRFW+EN F Q + Q SL R+ICD+
Sbjct: 395 RDGDRFWWENEGVFSMQQRQALAQISLPRIICDN 428
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 717 GNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGN 755
NID ++G + E GRVGP + C++ QF+++RDG+
Sbjct: 360 NNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGD 398
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 914 IDCKKSCAFSPPCFPMEVPHDDP 936
++C+ SC PPCFP+++P +DP
Sbjct: 1 VNCETSCVQQPPCFPLKIPPNDP 23
>pdb|1MYP|C Chain C, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3
Angstroms Resolution
pdb|1MYP|D Chain D, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3
Angstroms Resolution
pdb|1MHL|C Chain C, Crystal Structure Of Human Myeloperoxidase Isoform C
Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
pdb|1MHL|D Chain D, Crystal Structure Of Human Myeloperoxidase Isoform C
Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
Length = 466
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 70/112 (62%)
Query: 519 LGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAVSLDLAAM 578
L + FF+ WR+V EGG+DP+LRG + +PAK R + E+ ++LF + LDL A+
Sbjct: 249 LSRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIAVDEIRERLFEQVMRIGLDLPAL 308
Query: 579 NIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHPG 630
N+QR RDHG+P YNAWR +CGLP+ T L + + ++ KL YG P
Sbjct: 309 NMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPN 360
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 7/94 (7%)
Query: 771 GRVGPTMRCL-----LIDQFKRIRDGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRI 825
G++G +R L L++Q+ NID ++G + E GRVGP + C++ QF+++
Sbjct: 337 GQLGTVLRNLKLARKLMEQYGT--PNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKL 394
Query: 826 RDGDRFWYENPSTFKPAQLTQIKQASLARVICDS 859
RDGDRFW+EN F Q + Q SL R+ICD+
Sbjct: 395 RDGDRFWWENEGVFSMQQRQALAQISLPRIICDN 428
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 717 GNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGN 755
NID ++G + E GRVGP + C++ QF+++RDG+
Sbjct: 360 NNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGD 398
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 914 IDCKKSCAFSPPCFPMEVPHDDP 936
++C+ SC PPCFP+++P +DP
Sbjct: 1 VNCETSCVQQPPCFPLKIPPNDP 23
>pdb|1CXP|C Chain C, Cryogenic Crystal Structure Of Human Myeloperoxidase
Isoform C
pdb|1CXP|D Chain D, Cryogenic Crystal Structure Of Human Myeloperoxidase
Isoform C
pdb|1D2V|C Chain C, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D2V|D Chain D, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D7W|C Chain C, Crystal Structure Of Human Myeloperoxidase Isoform C
Complexed With Cyanide And Bromide At Ph 4.0
pdb|1D7W|D Chain D, Crystal Structure Of Human Myeloperoxidase Isoform C
Complexed With Cyanide And Bromide At Ph 4.0
pdb|1D5L|C Chain C, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D5L|D Chain D, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1DNU|C Chain C, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
Complex
pdb|1DNU|D Chain D, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
Complex
pdb|1DNW|C Chain C, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
pdb|1DNW|D Chain D, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
pdb|4DL1|C Chain C, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|D Chain D, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|G Chain G, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|H Chain H, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|K Chain K, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|L Chain L, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|O Chain O, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|P Chain P, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
Length = 466
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 70/112 (62%)
Query: 519 LGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAVSLDLAAM 578
L + FF+ WR+V EGG+DP+LRG + +PAK R + E+ ++LF + LDL A+
Sbjct: 249 LSRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIAVDEIRERLFEQVMRIGLDLPAL 308
Query: 579 NIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHPG 630
N+QR RDHG+P YNAWR +CGLP+ T L + + ++ KL YG P
Sbjct: 309 NMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPN 360
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 7/94 (7%)
Query: 771 GRVGPTMRCL-----LIDQFKRIRDGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRI 825
G++G +R L L++Q+ NID ++G + E GRVGP + C++ QF+++
Sbjct: 337 GQLGTVLRNLKLARKLMEQYGT--PNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKL 394
Query: 826 RDGDRFWYENPSTFKPAQLTQIKQASLARVICDS 859
RDGDRFW+EN F Q + Q SL R+ICD+
Sbjct: 395 RDGDRFWWENEGVFSMQQRQALAQISLPRIICDN 428
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 717 GNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGN 755
NID ++G + E GRVGP + C++ QF+++RDG+
Sbjct: 360 NNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGD 398
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 914 IDCKKSCAFSPPCFPMEVPHDDP 936
++C+ SC PPCFP+++P +DP
Sbjct: 1 VNCETSCVQQPPCFPLKIPPNDP 23
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 121/288 (42%), Gaps = 19/288 (6%)
Query: 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD---GFVL 101
PP FI+ P +G + C G P P++TW G ++S T E D G VL
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVL 65
Query: 102 VLNGVRE-SDAGVYNCVAQNSEGSAESVAMIRINGHRA-----PRLVVKPFDMRAPAGSS 155
+ +R D VY CVAQNS G A + + P + + P +
Sbjct: 66 RIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRT 125
Query: 156 VEIPCKPDGEPLPRISWSKDEAEF---VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 212
+ C G P P I+W KD + K R+G+L++ + D G Y C A+N
Sbjct: 126 ATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATN 185
Query: 213 LLG---EDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNS 269
G A Y+ V P F P+S G ITC+ G P+P + W
Sbjct: 186 SAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAED 245
Query: 270 LDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
L +D + + VL L V+ D+ Y CVA +S G E+VA I +
Sbjct: 246 LTPEDDMPVGRN--VLELTDVK--DSANYTCVAMSSLGVIEAVAQITV 289
Score = 106 bits (264), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 129/293 (44%), Gaps = 24/293 (8%)
Query: 135 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS-- 192
G PR + +P D +G C+ G+P PR++W+K + R I S
Sbjct: 3 GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62
Query: 193 --LRLYNI-GPQDSGLYRCTASNLLGEDVAEGYLTV-------TGAPPIFIQRPVSTTYS 242
LR+ + P+D +Y C A N +GE LTV +G P I + +
Sbjct: 63 AVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVER 122
Query: 243 TGSTSRITCLVEGHPLPQMTWFHDGNSLD---SDDHVTYEHDGFVLVLNGVRESDAGVYN 299
T T+ + C G+P P++TWF D +D S+ + G L + E+D G Y
Sbjct: 123 T-RTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSG-ALQIESSEETDQGKYE 180
Query: 300 CVAQNSEG---SAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW 356
CVA NS G S+ + +R+ + APR + P G +V I C G P+P + W
Sbjct: 181 CVATNSAGVRYSSPANLYVRVQ-NVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKW 239
Query: 357 SKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
+ + + + + R L L ++ +DS Y C A + LG A +TV
Sbjct: 240 MQGAEDLTPEDDMPVGRN-VLELTDV--KDSANYTCVAMSSLGVIEAVAQITV 289
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 92/220 (41%), Gaps = 18/220 (8%)
Query: 23 YSCVAGNPAGVYRGDLHVTV-------NAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLP 75
Y CVA N G +TV + P P T+ + C G+P P
Sbjct: 79 YECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDP 138
Query: 76 QMTWFHDGNSLD---SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG---SAESVA 129
++TWF D +D S+ + G L + E+D G Y CVA NS G S+ +
Sbjct: 139 EITWFKDFLPVDPSASNGRIKQLRSG-ALQIESSEETDQGKYECVATNSAGVRYSSPANL 197
Query: 130 MIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR 189
+R+ + APR + P G +V I C G P+P + W + + + + + R
Sbjct: 198 YVRVQ-NVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGR 256
Query: 190 TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAP 229
L L ++ +DS Y C A + LG A +TV P
Sbjct: 257 N-VLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKSLP 293
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 7 STELVISGVQREHGGRYSCVAGNPAGVYR---GDLHVTV-NAPPIFIQRPVSTTYSTGST 62
S L I + G+Y CVA N AGV +L+V V N P F P+S G
Sbjct: 163 SGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGN 222
Query: 63 SRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE 122
ITC+ G P+P + W L +D + + VL L V+ D+ Y CVA +S
Sbjct: 223 VNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRN--VLELTDVK--DSANYTCVAMSSL 278
Query: 123 GSAESVAMIRI 133
G E+VA I +
Sbjct: 279 GVIEAVAQITV 289
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 319 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS-- 376
G PR + +P D +G C+ G+P PR++W+K + R I S
Sbjct: 3 GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62
Query: 377 --LRLYNI-GPQDSGLYRCTASNLLGEDVAEGYLTVTGENSV 415
LR+ + P+D +Y C A N +GE LTV E+ +
Sbjct: 63 AVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQL 104
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 105 bits (263), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 126/280 (45%), Gaps = 12/280 (4%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHK---IHRTGSLRL 195
P +KP + G S C G +I+W+KD E N+K + T +L +
Sbjct: 6 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTV 65
Query: 196 YNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQR-PVSTTYSTGSTSRITCLVE 254
+ D+G Y C ASN+ G+D L V APP FI++ S +R C +
Sbjct: 66 LKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ-APPRFIKKLEPSRIVKQDEHTRYECKIG 124
Query: 255 GHPLPQMTWFHDGNSLD--SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESV 312
G P ++ W+ D + S +++ VL + + D+G Y C A N+ GSA S
Sbjct: 125 GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSS 184
Query: 313 AMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH 372
+++ P KP + G+ V + C+ G P ++SW KD+ E + +KI
Sbjct: 185 TSLKVK--EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIM 242
Query: 373 RTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
S+ + N+ D G Y+C ASN +G G +T+
Sbjct: 243 SENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 116/285 (40%), Gaps = 13/285 (4%)
Query: 44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL--DSDDHVTYEHDGFVL 101
APP F +PVS + G + C V G ++TW D + + +T + L
Sbjct: 4 APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATL 63
Query: 102 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMR-APAGSSVEIPC 160
+ V + DAG Y C A N G A + + PR + K R C
Sbjct: 64 TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQA--PPRFIKKLEPSRIVKQDEHTRYEC 121
Query: 161 KPDGEPLPRISWSKDEAEFVEDRNHK---IHRTGSLRLYNIGPQDSGLYRCTASNLLGED 217
K G P ++ W KDE E E + + L +YN+ +DSG Y C A N G
Sbjct: 122 KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA 181
Query: 218 VAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVT 277
+ L V PP+F ++P G+ + C ++G P Q++W D L S
Sbjct: 182 SSSTSLKVK-EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYK 240
Query: 278 YEHDGFVL---VLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 319
+ F+ +LN V +D G Y C A N GS V I +
Sbjct: 241 IMSENFLTSIHILN-VDSADIGEYQCKASNDVGSYTCVGSITLKA 284
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 103/227 (45%), Gaps = 8/227 (3%)
Query: 5 RSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQR-PVSTTYSTGSTS 63
++ L + V + G+Y+C A N AG + V APP FI++ S +
Sbjct: 58 ENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQAPPRFIKKLEPSRIVKQDEHT 117
Query: 64 RITCLVEGHPLPQMTWFHDGNSLD--SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNS 121
R C + G P ++ W+ D + S +++ VL + + D+G Y C A N+
Sbjct: 118 RYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNA 177
Query: 122 EGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVE 181
GSA S +++ P KP + G+ V + C+ G P ++SW KD+ E
Sbjct: 178 AGSASSSTSLKVK--EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRS 235
Query: 182 DRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
+ +KI S+ + N+ D G Y+C ASN +G G +T+
Sbjct: 236 GKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 71/175 (40%), Gaps = 8/175 (4%)
Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL--DSDDHVTYEHDGFVL 285
APP F +PVS + G + C V G ++TW D + + +T + L
Sbjct: 4 APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATL 63
Query: 286 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMR-APAGSSVEIPC 344
+ V + DAG Y C A N G A + + PR + K R C
Sbjct: 64 TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQA--PPRFIKKLEPSRIVKQDEHTRYEC 121
Query: 345 KPDGEPLPRISWSKDEAEFVEDRNHK---IHRTGSLRLYNIGPQDSGLYRCTASN 396
K G P ++ W KDE E E + + L +YN+ +DSG Y C A N
Sbjct: 122 KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 176
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 116/285 (40%), Gaps = 13/285 (4%)
Query: 44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL--DSDDHVTYEHDGFVL 101
APP F +PVS + G + C V G ++TW D + + +T + L
Sbjct: 4 APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATL 63
Query: 102 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMR-APAGSSVEIPC 160
+ V + DAG Y C A N G A + + PR + K R C
Sbjct: 64 TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV--QEPPRFIKKLEPSRIVKQDEHTRYEC 121
Query: 161 KPDGEPLPRISWSKDEAEFVEDRNHK---IHRTGSLRLYNIGPQDSGLYRCTASNLLGED 217
K G P ++ W KDE E E + + L +YN+ +DSG Y C A N G
Sbjct: 122 KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA 181
Query: 218 VAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVT 277
+ L V PP+F ++P G+ + C ++G P Q++W D L S
Sbjct: 182 SSSTSLKVK-EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYK 240
Query: 278 YEHDGFVL---VLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 319
+ F+ +LN V +D G Y C A N GS V I +
Sbjct: 241 IMSENFLTSIHILN-VDSADIGEYQCKASNDVGSYTCVGSITLKA 284
Score = 103 bits (258), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 125/280 (44%), Gaps = 12/280 (4%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHK---IHRTGSLRL 195
P +KP + G S C G +I+W+KD E N+K + T +L +
Sbjct: 6 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTV 65
Query: 196 YNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQR-PVSTTYSTGSTSRITCLVE 254
+ D+G Y C ASN+ G+D L V PP FI++ S +R C +
Sbjct: 66 LKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ-EPPRFIKKLEPSRIVKQDEHTRYECKIG 124
Query: 255 GHPLPQMTWFHDGNSLD--SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESV 312
G P ++ W+ D + S +++ VL + + D+G Y C A N+ GSA S
Sbjct: 125 GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSS 184
Query: 313 AMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH 372
+++ P KP + G+ V + C+ G P ++SW KD+ E + +KI
Sbjct: 185 TSLKVK--EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIM 242
Query: 373 RTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
S+ + N+ D G Y+C ASN +G G +T+
Sbjct: 243 SENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 102/227 (44%), Gaps = 8/227 (3%)
Query: 5 RSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQR-PVSTTYSTGSTS 63
++ L + V + G+Y+C A N AG + V PP FI++ S +
Sbjct: 58 ENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHT 117
Query: 64 RITCLVEGHPLPQMTWFHDGNSLD--SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNS 121
R C + G P ++ W+ D + S +++ VL + + D+G Y C A N+
Sbjct: 118 RYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNA 177
Query: 122 EGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVE 181
GSA S +++ P KP + G+ V + C+ G P ++SW KD+ E
Sbjct: 178 AGSASSSTSLKVK--EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRS 235
Query: 182 DRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
+ +KI S+ + N+ D G Y+C ASN +G G +T+
Sbjct: 236 GKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 71/175 (40%), Gaps = 8/175 (4%)
Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL--DSDDHVTYEHDGFVL 285
APP F +PVS + G + C V G ++TW D + + +T + L
Sbjct: 4 APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATL 63
Query: 286 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMR-APAGSSVEIPC 344
+ V + DAG Y C A N G A + + PR + K R C
Sbjct: 64 TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV--QEPPRFIKKLEPSRIVKQDEHTRYEC 121
Query: 345 KPDGEPLPRISWSKDEAEFVEDRNHK---IHRTGSLRLYNIGPQDSGLYRCTASN 396
K G P ++ W KDE E E + + L +YN+ +DSG Y C A N
Sbjct: 122 KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 176
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 99/384 (25%), Positives = 149/384 (38%), Gaps = 28/384 (7%)
Query: 46 PIFIQRPVSTTYSTGSTSR---ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH-DGFVL 101
P+F ++P T + GS +TC +P W +G L Y G ++
Sbjct: 5 PVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLV 64
Query: 102 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK 161
+ N V+ DAG Y CVA N+ G+ S G + ++ G V C
Sbjct: 65 ISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCS 124
Query: 162 PDGEPLPRISWSKDEAEF-----VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTAS---NL 213
P P +S+ EF + R TG+L + D G Y C A+ +
Sbjct: 125 PPPH-YPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDF 183
Query: 214 LGEDVAEGYLTVT--------GAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFH 265
+ + V + ++ AP I + P T TG + C G+P+PQ+ W
Sbjct: 184 ITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKW-- 241
Query: 266 DGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRL 325
LD + +L + V D G Y C A+N +G RI H P
Sbjct: 242 --RKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKG--RDTYQGRIIIHAQPDW 297
Query: 326 VVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQ 385
+ D A GS + C G+P P + W +D + + +N G LR + +
Sbjct: 298 LDVITDTEADIGSDLRWSCVASGKPRPAVRWLRD-GQPLASQNRIEVSGGELRFSKLVLE 356
Query: 386 DSGLYRCTASNLLGEDVAEGYLTV 409
DSG+Y+C A N G A LTV
Sbjct: 357 DSGMYQCVAENKHGTVYASAELTV 380
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 91/339 (26%), Positives = 137/339 (40%), Gaps = 36/339 (10%)
Query: 4 RRSSTELVISG-VQREHGGRYSCVAGNPAG-VYRGDLHVTVNAPPIFIQR-------PVS 54
R + +LVIS V+ + G Y CVA N G V + + F+Q PV
Sbjct: 57 RLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFG----FLQEFSAEERDPVK 112
Query: 55 TTYSTGSTSRITCLVEGH-PLPQMTWFHDG--NSLDSDDHVTYEHDGFVLVLNGVRESDA 111
T G TC H P W + N + +D L + SD
Sbjct: 113 ITEGWGVM--FTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDL 170
Query: 112 GVYNCVAQN----------SEGSAESVAMIRINGHRAPRLVVK-PFDMRAPAGSSVEIPC 160
G Y+C A + S+ S S+A + AP + K P D A G V + C
Sbjct: 171 GNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQY-APSIKAKFPADTYALTGQMVTLEC 229
Query: 161 KPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE 220
G P+P+I W K + + + L + N+ +D G Y C A N+ G D +
Sbjct: 230 FAFGNPVPQIKWRKLDGS---QTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQ 286
Query: 221 GYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH 280
G + + A P ++ T GS R +C+ G P P + W DG L S + + E
Sbjct: 287 GRIIIH-AQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRI--EV 343
Query: 281 DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 319
G L + + D+G+Y CVA+N G+ + A + +
Sbjct: 344 SGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 382
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 102/390 (26%), Positives = 152/390 (38%), Gaps = 40/390 (10%)
Query: 46 PIFIQRPVSTTYSTGSTSR---ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH-DGFVL 101
P+F +P+S + ST + C P W +G + + ++ G ++
Sbjct: 4 PVFEDQPLSVLFPEESTEEQVLLACRARASPPATYRWKMNGTEMKLEPGSRHQLVGGNLV 63
Query: 102 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK 161
++N + DAGVY C+A N G+ S I G + ++A G V +PC
Sbjct: 64 IMNPTKAQDAGVYQCLASNPVGTVVSREAILRFGFLQEFSKEERDPVKAHEGWGVMLPCN 123
Query: 162 PDGEPLPRISWSKDEAEF-----VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTAS----- 211
P P +S+ EF + R+ TG+L + D G Y C A+
Sbjct: 124 PPAH-YPGLSYRWLLNEFPNFIPTDGRHFVSQTTGNLYIARTNASDLGNYSCLATSHMDF 182
Query: 212 ------------NLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLP 259
NL ED T AP I + P T G + C G+P+P
Sbjct: 183 STKSVFSKFAQLNLAAED------TRLFAPSIKARFPAETYALVGQQVTLECFAFGNPVP 236
Query: 260 QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 319
++ W SL S T E L + V D G Y C A+NS+G RI
Sbjct: 237 RIKWRKVDGSL-SPQWTTAEP---TLQIPSVSFEDEGTYECEAENSKG--RDTVQGRIIV 290
Query: 320 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRL 379
P + D A GS++ C G+P P + W ++ E + +N G LR
Sbjct: 291 QAQPEWLKVISDTEADIGSNLRWGCAAAGKPRPTVRWLRN-GEPLASQNRVEVLAGDLRF 349
Query: 380 YNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
+ +DSG+Y+C A N G A L V
Sbjct: 350 SKLSLEDSGMYQCVAENKHGTIYASAELAV 379
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 76/182 (41%), Gaps = 7/182 (3%)
Query: 44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVL 103
AP I + P T G + C G+P+P++ W SL S T E L +
Sbjct: 205 APSIKARFPAETYALVGQQVTLECFAFGNPVPRIKWRKVDGSL-SPQWTTAEP---TLQI 260
Query: 104 NGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPD 163
V D G Y C A+NS+G RI P + D A GS++ C
Sbjct: 261 PSVSFEDEGTYECEAENSKG--RDTVQGRIIVQAQPEWLKVISDTEADIGSNLRWGCAAA 318
Query: 164 GEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYL 223
G+P P + W ++ E + +N G LR + +DSG+Y+C A N G A L
Sbjct: 319 GKPRPTVRWLRN-GEPLASQNRVEVLAGDLRFSKLSLEDSGMYQCVAENKHGTIYASAEL 377
Query: 224 TV 225
V
Sbjct: 378 AV 379
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 53/126 (42%), Gaps = 2/126 (1%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLV 69
L I V E G Y C A N G + V A P +++ T GS R C
Sbjct: 258 LQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQPEWLKVISDTEADIGSNLRWGCAA 317
Query: 70 EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVA 129
G P P + W +G L S + V E L + + D+G+Y CVA+N G+ + A
Sbjct: 318 AGKPRPTVRWLRNGEPLASQNRV--EVLAGDLRFSKLSLEDSGMYQCVAENKHGTIYASA 375
Query: 130 MIRING 135
+ +
Sbjct: 376 ELAVQA 381
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 111/290 (38%), Gaps = 26/290 (8%)
Query: 144 KPFDMRAPAGSSVE---IPCKPDGEPLPRISWSKDEAEF-VEDRNHKIHRTGSLRLYN-I 198
+P + P S+ E + C+ P W + E +E + G+L + N
Sbjct: 9 QPLSVLFPEESTEEQVLLACRARASPPATYRWKMNGTEMKLEPGSRHQLVGGNLVIMNPT 68
Query: 199 GPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQR---PVSTTYSTGSTSRITCLVEG 255
QD+G+Y+C ASN +G V+ + G F + PV G + C
Sbjct: 69 KAQDAGVYQCLASNPVGTVVSREAILRFGFLQEFSKEERDPVKAHEGWGVM--LPCNPPA 126
Query: 256 H-PLPQMTWFHDG--NSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVA-QNSEGSAES 311
H P W + N + +D L + SD G Y+C+A + + S +S
Sbjct: 127 HYPGLSYRWLLNEFPNFIPTDGRHFVSQTTGNLYIARTNASDLGNYSCLATSHMDFSTKS 186
Query: 312 V--AMIRIN-GHRAPRLVVKPFDMRAPA------GSSVEIPCKPDGEPLPRISWSKDEAE 362
V ++N RL R PA G V + C G P+PRI W K +
Sbjct: 187 VFSKFAQLNLAAEDTRLFAPSIKARFPAETYALVGQQVTLECFAFGNPVPRIKWRKVDGS 246
Query: 363 FVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGE 412
+L++ ++ +D G Y C A N G D +G + V +
Sbjct: 247 LSPQWTTA---EPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQ 293
>pdb|2R5L|A Chain A, Crystal Structure Of Lactoperoxidase At 2.4a Resolution
pdb|3N8F|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Thiocyanate At 3.2 A Resolution
pdb|3N8F|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Thiocyanate At 3.2 A Resolution
pdb|3NIU|A Chain A, Crystal Structure Of The Complex Of Dimeric Goat
Lactoperoxidase With Diethylene Glycol At 2.9 A
Resolution
pdb|3NIU|B Chain B, Crystal Structure Of The Complex Of Dimeric Goat
Lactoperoxidase With Diethylene Glycol At 2.9 A
Resolution
pdb|3NAK|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Hypothiocyanite At 3.3 A Resolution
pdb|3NAK|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Hypothiocyanite At 3.3 A Resolution
pdb|3QF1|A Chain A, Crystal Structure Of The Complex Of Caprine
Lactoperoxidase With Diethylenediamine At 2.6a
Resolution
pdb|3RKE|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With A
Tightly Bound Inhibitor, 4-Aminophenyl-4h-Imidazole-1-Yl
Methanone At 2.3 A Resolution
pdb|3R55|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Pyrazinamide At 2.1 A Resolution
pdb|3SXV|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Amitrole At 2.1 A Resolution
Length = 595
Score = 99.8 bits (247), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Query: 516 DLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAV-SLD 574
+L L FF+ WR++ +GG+DPL+RG + +K + + EL +KLF H V D
Sbjct: 373 ELPLHTLFFNTWRIIKDGGIDPLVRGLLAKNSKLMNQNKMVTSELRNKLFQPTHKVHGFD 432
Query: 575 LAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHP 629
LAA+N+QR RDHG+P YN+WR +CGL + T + L + ++ + KL LY P
Sbjct: 433 LAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQAVLKNKVLAKKLLDLYKTP 487
Score = 79.3 bits (194), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Query: 781 LIDQFKRIRDGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFK 840
L+D +K NID ++G E V+ GRVGP + CLL QF++IRDGDRFW+ENP F
Sbjct: 480 LLDLYKT--PDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFT 537
Query: 841 PAQLTQIKQASLARVICDS 859
Q +++ S +R+ICD+
Sbjct: 538 EKQRDSLQKVSFSRLICDN 556
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 887 MVMQWGQFLDHDLDHAIPATSLESWE--GIDCKKSCAFSPPCFPMEVPHDDP 936
+ MQWGQ +DHDLD A P T L S E + C++ C CFP+ P +DP
Sbjct: 99 LFMQWGQIVDHDLDFA-PETELGSSEHSKVQCEEYCVQGDECFPIMFPKNDP 149
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 669 YRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPILSSPMAGNIDPFVGAILE 728
Y + G C L P +L G + +LK + + + +P NID ++G E
Sbjct: 449 YNSWRGFCG-LSQP---KTLKGLQAVLK---NKVLAKKLLDLYKTP--DNIDIWIGGNAE 499
Query: 729 DQVDGGRVGPTMRCLLIDQFKRIRDGN 755
V+ GRVGP + CLL QF++IRDG+
Sbjct: 500 PMVERGRVGPLLACLLGRQFQQIRDGD 526
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 666 HTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPILSSPMAGNIDPF--- 722
+ YRTI G CNN + P GA+ R L YE+G + P G P
Sbjct: 18 QSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLAVPFGWTQRKTRNGFRVPLARE 77
Query: 723 VGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNID 757
V + +D V R LL Q+ +I D ++D
Sbjct: 78 VSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLD 112
>pdb|2E9E|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Nitrate At 3.25 A Resolution
pdb|2E9E|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Nitrate At 3.25 A Resolution
pdb|2OJV|A Chain A, Crystal Structure Of A Ternary Complex Of Goat
Lactoperoxidase With Cyanide And Iodide Ions At 2.4 A
Resolution
pdb|2EFB|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Phosphate At 2.94 A Resolution
pdb|2EFB|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Phosphate At 2.94 A Resolution
pdb|2EHA|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With
Formate Anion At 3.3 A Resolution
pdb|2EHA|B Chain B, Crystal Structure Of Goat Lactoperoxidase Complexed With
Formate Anion At 3.3 A Resolution
Length = 595
Score = 99.8 bits (247), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Query: 516 DLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAV-SLD 574
+L L FF+ WR++ +GG+DPL+RG + +K + + EL +KLF H V D
Sbjct: 373 ELPLHTLFFNTWRIIKDGGIDPLVRGLLAKNSKLMNQNKMVTSELRNKLFQPTHKVHGFD 432
Query: 575 LAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHP 629
LAA+N+QR RDHG+P YN+WR +CGL + T + L + ++ + KL LY P
Sbjct: 433 LAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQAVLKNKVLAKKLLDLYKTP 487
Score = 79.3 bits (194), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Query: 781 LIDQFKRIRDGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFK 840
L+D +K NID ++G E V+ GRVGP + CLL QF++IRDGDRFW+ENP F
Sbjct: 480 LLDLYKT--PDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFT 537
Query: 841 PAQLTQIKQASLARVICDS 859
Q +++ S +R+ICD+
Sbjct: 538 EKQRDSLQKVSFSRLICDN 556
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 887 MVMQWGQFLDHDLDHAIPATSLESWE--GIDCKKSCAFSPPCFPMEVPHDDP 936
+ MQWGQ +DHDLD A P T L S E + C++ C CFP+ P +DP
Sbjct: 99 LFMQWGQIVDHDLDFA-PETELGSSEHSKVQCEEYCVQGDECFPIMFPKNDP 149
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 669 YRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPILSSPMAGNIDPFVGAILE 728
Y + G C L P +L G + +LK + + + +P NID ++G E
Sbjct: 449 YNSWRGFCG-LSQP---KTLKGLQAVLK---NKVLAKKLLDLYKTP--DNIDIWIGGNAE 499
Query: 729 DQVDGGRVGPTMRCLLIDQFKRIRDGN 755
V+ GRVGP + CLL QF++IRDG+
Sbjct: 500 PMVERGRVGPLLACLLGRQFQQIRDGD 526
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 666 HTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPILSSPMAGNIDPF--- 722
+ YRTI G CNN + P GA+ R L YE+G + P G P
Sbjct: 18 QSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLAVPFGWTQRKTRNGFRVPLARE 77
Query: 723 VGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNID 757
V + +D V R LL Q+ +I D ++D
Sbjct: 78 VSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLD 112
>pdb|2PT3|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.34 A
Resolution Reveals Multiple Anion Binding Sites
pdb|2PUM|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complex With
Catechol And Iodide At 2.7 A Resolution
pdb|2QPK|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Salicylhydroxamic Acid At 2.34 A Resolution
pdb|2QQT|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Acetyl Salicylic Acid At 2.5 A Resolution
pdb|2QRB|A Chain A, Crystal Structure Of Chloride Saturated Bovine
Lactoperoxidase At 2.5 A Resolution Shows Multiple
Halide Binding Sites
pdb|3BXI|A Chain A, Structure Of The Complex Of Bovine Lactoperoxidase With
Its Catalyzed Product Hypothiocyanate Ion At 2.3a
Resolution
pdb|3ERI|A Chain A, First Structural Evidence Of Substrate Specificity In
Mammalian Peroxidases: Crystal Structures Of Substrate
Complexes With Lactoperoxidases From Two Different
Species
pdb|3GC1|A Chain A, Crystal Structure Of Bovine Lactoperoxidase
pdb|3GCJ|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3GCK|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3GCL|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3I6N|A Chain A, Mode Of Binding Of The Tuberculosis Prodrug Isoniazid To
Peroxidases: Crystal Structure Of Bovine Lactoperoxidase
With Isoniazid At 2.7 Resolution
pdb|3KRQ|A Chain A, Crystal Structure Of The Complex Of Lactoperoxidase With A
Potent Inhibitor Amino-Triazole At 2.2a Resolution
pdb|3NYH|A Chain A, Crystal Structure Of Lactoperoxidase Complexed
Simultaneously With Thiocyanate Ion, Iodide Ion, Bromide
Ion, Chloride Ion Through The Substrate Diffusion
Channel Reveals A Preferential Queue Of The Inorganic
Substrates Towards The Distal Heme Cavity
pdb|3OGW|A Chain A, Structure Of The Complex Of Bovine Lactoperoxidase With
Indomethacin At 1.9a Resolution
pdb|3PY4|A Chain A, Crystal Structure Of Bovine Lactoperoxidase In Complex
With Paracetamol At 2.4a Resolution
pdb|3Q9K|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complexed With
Phenyl Isothiocyanate At 1.7 A Resolution
pdb|3QL6|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Nimesulide At 1.7 A Resolution
pdb|3S4F|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With 1h- Pyrazolo[4,3-C] Pyridine At 1.99 A Resolution
pdb|3R4X|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complexed With
Pyrazine-2- Carboxamide At 2 A Resolution
pdb|3R5O|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With 4- Allyl-2-Methoxyphenol At 2.6 A Resolution
pdb|3TGY|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Ascorbic Acid At 2.35 A Resolution
pdb|3TUW|A Chain A, Crystal Structure Of Lactoperoxidase Complexed With
Pyrazinamide At 2.2a Resolution
pdb|3UBA|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With P- Hydroxycinnamic Acid At 2.6 A Resolution
pdb|3V6Q|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Carbon Monoxide At 2.0 A Resolution
pdb|4GM7|A Chain A, Structure Of Cinnamic Acid Bound Bovine Lactoperoxidase At
2.6a Resolution.
pdb|4GN6|A Chain A, Structure Of Paracetamol Bound Bovine Lactoperoxidase At
2.45a Resolution
Length = 595
Score = 99.4 bits (246), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Query: 516 DLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAV-SLD 574
+L L FF+ WR++ +GG+DPL+RG + +K + + EL +KLF H + D
Sbjct: 373 ELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFD 432
Query: 575 LAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHP 629
LAA+N+QR RDHG+P YN+WR +CGL + T + L + ++ + KL LY P
Sbjct: 433 LAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTP 487
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 47/68 (69%)
Query: 792 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQAS 851
NID ++G E V+ GRVGP + CLL QF++IRDGDRFW+ENP F Q +++ S
Sbjct: 489 NIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKVS 548
Query: 852 LARVICDS 859
+R+ICD+
Sbjct: 549 FSRLICDN 556
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 887 MVMQWGQFLDHDLDHAIPATSLESWE--GIDCKKSCAFSPPCFPMEVPHDDP 936
+ MQWGQ +DHDLD A P T L S E C++ C CFP+ P +DP
Sbjct: 99 LFMQWGQIVDHDLDFA-PETELGSNEHSKTQCEEYCIQGDNCFPIMFPKNDP 149
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 669 YRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPILSSPMAGNIDPFVGAILE 728
Y + G C L P +L G + +LK + + + +P NID ++G E
Sbjct: 449 YNSWRGFCG-LSQP---KTLKGLQTVLK---NKILAKKLMDLYKTP--DNIDIWIGGNAE 499
Query: 729 DQVDGGRVGPTMRCLLIDQFKRIRDGN 755
V+ GRVGP + CLL QF++IRDG+
Sbjct: 500 PMVERGRVGPLLACLLGRQFQQIRDGD 526
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Query: 666 HTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPILSSPMAGNIDPF--- 722
++ YRTI G CNN + P GA+ R L YE+G + P G P
Sbjct: 18 NSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGFRVPLARE 77
Query: 723 VGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNID 757
V + +D V R LL Q+ +I D ++D
Sbjct: 78 VSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLD 112
>pdb|3R5Q|A Chain A, Crystal Structure Of Sheep Lactoperoxidase In Complex With
Tetrahydrofuran At 2.7 A Resolution
Length = 595
Score = 99.4 bits (246), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Query: 516 DLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAV-SLD 574
+L L FF+ WR++ +GG+DPL+RG + +K + + EL +KLF H + D
Sbjct: 373 ELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMNQNKMVTSELRNKLFQPTHKIHGFD 432
Query: 575 LAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHP 629
LAA+N+QR RDHG+P YN+WR +CGL + T + L + ++ + KL LY P
Sbjct: 433 LAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQAVLKNKILAKKLLDLYKTP 487
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Query: 781 LIDQFKRIRDGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFK 840
L+D +K NID ++G E V+ GRVGP + CLL QF++IRDGDRFW+ENP F
Sbjct: 480 LLDLYKT--PDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFT 537
Query: 841 PAQLTQIKQASLARVICDS 859
Q +++ S +R+ICD+
Sbjct: 538 EKQRDSLQKVSFSRLICDN 556
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 887 MVMQWGQFLDHDLDHAIPATSLESWE--GIDCKKSCAFSPPCFPMEVPHDDP 936
+ MQWGQ +DHDLD A P T L S E + C++ C CFP+ P +DP
Sbjct: 99 LFMQWGQIVDHDLDFA-PETELGSSEHSKVQCEEYCIQGDNCFPIMFPKNDP 149
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 27/38 (71%)
Query: 718 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGN 755
NID ++G E V+ GRVGP + CLL QF++IRDG+
Sbjct: 489 NIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGD 526
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Query: 666 HTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPILSSPMAGNIDPF--- 722
++ YRTI G CNN + P GA+ R L YE+G + P G P
Sbjct: 18 NSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLAVPFGWTQRKTRNGFRVPLARE 77
Query: 723 VGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNID 757
V + +D V R LL Q+ +I D ++D
Sbjct: 78 VSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLD 112
>pdb|2Z5Z|A Chain A, Crystal Structure Of The Complex Of Buffalo
Lactoperoxidase With Fluoride Ion At 3.5a Resolution
pdb|3FNL|A Chain A, Crystal Structure Of The Complex Of Buffalo
Lactoperoxidase With Salicylhydroxamic Acid At 2.48 A
Resolution
Length = 595
Score = 99.4 bits (246), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Query: 516 DLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAV-SLD 574
+L L FF+ WR++ +GG+DPL+RG + +K + + EL +KLF H + D
Sbjct: 373 ELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFD 432
Query: 575 LAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHP 629
LAA+N+QR RDHG+P YN+WR +CGL + T + L + ++ + KL LY P
Sbjct: 433 LAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTP 487
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 47/68 (69%)
Query: 792 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQAS 851
NID ++G E V+ GRVGP + CLL QF++IRDGDRFW+ENP F Q +++ S
Sbjct: 489 NIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKMS 548
Query: 852 LARVICDS 859
+R+ICD+
Sbjct: 549 FSRLICDN 556
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 887 MVMQWGQFLDHDLDHAIPATSLESWE--GIDCKKSCAFSPPCFPMEVPHDDP 936
+ MQWGQ +DHDLD A P T L S E C++ C CFP+ P +DP
Sbjct: 99 LFMQWGQIVDHDLDFA-PETELGSNEHSKTQCEEYCIQGDNCFPIMFPKNDP 149
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 669 YRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPILSSPMAGNIDPFVGAILE 728
Y + G C L P +L G + +LK + + + +P NID ++G E
Sbjct: 449 YNSWRGFCG-LSQP---KTLKGLQTVLK---NKILAKKLMDLYKTP--DNIDIWIGGNAE 499
Query: 729 DQVDGGRVGPTMRCLLIDQFKRIRDGN 755
V+ GRVGP + CLL QF++IRDG+
Sbjct: 500 PMVERGRVGPLLACLLGRQFQQIRDGD 526
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 13/100 (13%)
Query: 666 HTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPI-------LSSPMAGN 718
++ YRTI G CNN + P GA+ R L YE+G + P P+A
Sbjct: 18 NSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGFRVPLARE 77
Query: 719 I-DPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNID 757
+ + VG + ED V R LL Q+ +I D ++D
Sbjct: 78 VSNKIVGYLDEDGVLDQN-----RSLLFMQWGQIVDHDLD 112
>pdb|2IPS|A Chain A, Crystal Structure Of A Ternary Complex Of Bovine
Lactoperoxidase With Thiocyanate And Iodide At 3.1 A
Resolution
pdb|2NQX|A Chain A, Crystal Structure Of Bovine Lactoperoxidase With Iodide
Ions At 2.9a Resolution
Length = 595
Score = 99.4 bits (246), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Query: 516 DLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAV-SLD 574
+L L FF+ WR++ +GG+DPL+RG + +K + + EL +KLF H + D
Sbjct: 373 ELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFD 432
Query: 575 LAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHP 629
LAA+N+QR RDHG+P YN+WR +CGL + T + L + ++ + KL LY P
Sbjct: 433 LAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTP 487
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 47/68 (69%)
Query: 792 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQAS 851
NID ++G E V+ GRVGP + CLL QF++IRDGDRFW+ENP F Q +++ S
Sbjct: 489 NIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKVS 548
Query: 852 LARVICDS 859
+R+ICD+
Sbjct: 549 FSRLICDN 556
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 887 MVMQWGQFLDHDLDHAIPATSLESWE--GIDCKKSCAFSPPCFPMEVPHDDP 936
+ MQWGQ +DHDLD A P T L S E C++ C CFP+ P +DP
Sbjct: 99 LFMQWGQIVDHDLDFA-PETELGSNEHSKTQCEEYCIQGDNCFPIMFPKNDP 149
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 669 YRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPILSSPMAGNIDPFVGAILE 728
Y + G C L P +L G + +LK + + + +P NID ++G E
Sbjct: 449 YNSWRGFCG-LSQP---KTLKGLQTVLK---NKILAKKLMDLYKTP--DNIDIWIGGNAE 499
Query: 729 DQVDGGRVGPTMRCLLIDQFKRIRDGN 755
V+ GRVGP + CLL QF++IRDG+
Sbjct: 500 PMVERGRVGPLLACLLGRQFQQIRDGD 526
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Query: 666 HTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPILSSPMAGNIDPF--- 722
++ YRTI G CNN + P GA+ R L YE+G + P G P
Sbjct: 18 NSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGFRVPLARE 77
Query: 723 VGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNID 757
V + +D V R LL Q+ +I D ++D
Sbjct: 78 VSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLD 112
>pdb|2GJ1|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.3a
Resolution
Length = 583
Score = 99.4 bits (246), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Query: 516 DLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAV-SLD 574
+L L FF+ WR++ +GG+DPL+RG + +K + + EL +KLF H + D
Sbjct: 361 ELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFD 420
Query: 575 LAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHP 629
LAA+N+QR RDHG+P YN+WR +CGL + T + L + ++ + KL LY P
Sbjct: 421 LAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTP 475
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 47/68 (69%)
Query: 792 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQAS 851
NID ++G E V+ GRVGP + CLL QF++IRDGDRFW+ENP F Q +++ S
Sbjct: 477 NIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKVS 536
Query: 852 LARVICDS 859
+R+ICD+
Sbjct: 537 FSRLICDN 544
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 887 MVMQWGQFLDHDLDHAIPATSLESWE--GIDCKKSCAFSPPCFPMEVPHDDP 936
+ MQWGQ +DHDLD A P T L S E C++ C CFP+ P +DP
Sbjct: 87 LFMQWGQIVDHDLDFA-PETELGSNEHSKTQCEEYCIQGDNCFPIMFPKNDP 137
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 59/128 (46%), Gaps = 16/128 (12%)
Query: 644 LIANLSGCMEHQR--TANCSDLCFHTKYRT--IDGTCNNLQ----HPMWGA-SLTGFRRL 694
L+A S M + T+ + F ++ D NLQ H M G S GF L
Sbjct: 387 LLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGL 446
Query: 695 LKPIYENGFSTPVA-PILSSPMAG------NIDPFVGAILEDQVDGGRVGPTMRCLLIDQ 747
+P G T + IL+ + NID ++G E V+ GRVGP + CLL Q
Sbjct: 447 SQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQ 506
Query: 748 FKRIRDGN 755
F++IRDG+
Sbjct: 507 FQQIRDGD 514
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Query: 666 HTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPILSSPMAGNIDPF--- 722
++ YRTI G CNN + P GA+ R L YE+G + P G P
Sbjct: 6 NSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGFRVPLARE 65
Query: 723 VGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNID 757
V + +D V R LL Q+ +I D ++D
Sbjct: 66 VSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLD 100
>pdb|2IKC|A Chain A, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A
Resolution Reveals The Binding Sites For Formate
pdb|2IKC|B Chain B, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A
Resolution Reveals The Binding Sites For Formate
Length = 595
Score = 99.4 bits (246), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Query: 516 DLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAV-SLD 574
+L L FF+ WR++ +GG+DPL+RG + +K + + EL +KLF H + D
Sbjct: 373 ELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMNQNKMVTSELRNKLFQPTHKIHGFD 432
Query: 575 LAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHP 629
LAA+N+QR RDHG+P YN+WR +CGL + T + L + ++ + KL LY P
Sbjct: 433 LAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQAVLKNKILAKKLLDLYKTP 487
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Query: 781 LIDQFKRIRDGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFK 840
L+D +K NID ++G E V+ GRVGP + CLL QF++IRDGDRFW+ENP F
Sbjct: 480 LLDLYKT--PDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFT 537
Query: 841 PAQLTQIKQASLARVICDS 859
Q +++ S +R+ICD+
Sbjct: 538 EKQRDSLQKVSFSRLICDN 556
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 887 MVMQWGQFLDHDLDHAIPATSLESWE--GIDCKKSCAFSPPCFPMEVPHDDP 936
+ MQWGQ +DHDLD A P T L S E + C++ C CFP+ P +DP
Sbjct: 99 LFMQWGQIVDHDLDFA-PETELGSSEHSKVQCEEYCIQGDNCFPIMFPKNDP 149
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 27/38 (71%)
Query: 718 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGN 755
NID ++G E V+ GRVGP + CLL QF++IRDG+
Sbjct: 489 NIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGD 526
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Query: 666 HTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPILSSPMAGNIDPF--- 722
++ YRTI G CNN + P GA+ R L YE+G + P G P
Sbjct: 18 NSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLAVPFGWTQRKTRNGFRVPLARE 77
Query: 723 VGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNID 757
V + +D V R LL Q+ +I D ++D
Sbjct: 78 VSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLD 112
>pdb|2O86|A Chain A, Crystal Structure Of A Ternary Complex Of Buffalo
Lactoperoxidase With Nitrate And Iodide At 2.8 A
Resolution
Length = 595
Score = 99.4 bits (246), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Query: 516 DLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAV-SLD 574
+L L FF+ WR++ +GG+DPL+RG + +K + + EL +KLF H + D
Sbjct: 373 ELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFD 432
Query: 575 LAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHP 629
LAA+N+QR RDHG+P YN+WR +CGL + T + L + ++ + KL LY P
Sbjct: 433 LAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTP 487
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 47/68 (69%)
Query: 792 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQAS 851
NID ++G E V+ GRVGP + CLL QF++IRDGDRFW+ENP F Q +++ S
Sbjct: 489 NIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKMS 548
Query: 852 LARVICDS 859
+R+ICD+
Sbjct: 549 FSRLICDN 556
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 887 MVMQWGQFLDHDLDHAIPATSLESWE--GIDCKKSCAFSPPCFPMEVPHDDP 936
+ MQWGQ +DHDLD A P T L S E C++ C CFP+ P +DP
Sbjct: 99 LFMQWGQIVDHDLDFA-PETELGSNEHSKTQCEEYCIQGDNCFPIMFPKNDP 149
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 59/128 (46%), Gaps = 16/128 (12%)
Query: 644 LIANLSGCMEHQR--TANCSDLCFHTKYRT--IDGTCNNLQ----HPMWGA-SLTGFRRL 694
L+A S M + T+ + F ++ D NLQ H M G S GF L
Sbjct: 399 LLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGL 458
Query: 695 LKPIYENGFSTPVA-PILSSPMAG------NIDPFVGAILEDQVDGGRVGPTMRCLLIDQ 747
+P G T + IL+ + NID ++G E V+ GRVGP + CLL Q
Sbjct: 459 SQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQ 518
Query: 748 FKRIRDGN 755
F++IRDG+
Sbjct: 519 FQQIRDGD 526
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 13/100 (13%)
Query: 666 HTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPI-------LSSPMAGN 718
++ YRTI G CNN + P GA+ R L YE+G + P P+A
Sbjct: 18 NSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGFRVPLARE 77
Query: 719 I-DPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNID 757
+ + VG + ED V R LL Q+ +I D ++D
Sbjct: 78 VSNKIVGYLDEDGVLDQN-----RSLLFMQWGQIVDHDLD 112
>pdb|3ERH|A Chain A, First Structural Evidence Of Substrate Specificity In
Mammalian Peroxidases: Crystal Structures Of Substrate
Complexes With Lactoperoxidases From Two Different
Species
pdb|3FAQ|A Chain A, Crystal Struture Of Lactoperoxidase Complex With Cyanide
Length = 595
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Query: 516 DLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAV-SLD 574
+L L FF+ WR++ +GG+DPL RG + +K + + EL +KLF H + D
Sbjct: 373 ELPLHTLFFNTWRIIKDGGIDPLTRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFD 432
Query: 575 LAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHP 629
LAA+N+QR RDHG+P YN+WR +CGL + T + L + ++ + KL LY P
Sbjct: 433 LAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTP 487
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 47/68 (69%)
Query: 792 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQAS 851
NID ++G E V+ GRVGP + CLL QF++IRDGDRFW+ENP F Q +++ S
Sbjct: 489 NIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKFS 548
Query: 852 LARVICDS 859
+R+ICD+
Sbjct: 549 FSRLICDN 556
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 887 MVMQWGQFLDHDLDHAIPATSLESWE--GIDCKKSCAFSPPCFPMEVPHDDP 936
+ MQWGQ +DHDLD A P T L S E C++ C CFP+ P +DP
Sbjct: 99 LFMQWGQIVDHDLDFA-PETELGSNEHSKTQCEEYCIQGDNCFPIMFPKNDP 149
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 669 YRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPILSSPMAGNIDPFVGAILE 728
Y + G C L P +L G + +LK + + + +P NID ++G E
Sbjct: 449 YNSWRGFCG-LSQP---KTLKGLQTVLK---NKILAKKLMDLYKTP--DNIDIWIGGNAE 499
Query: 729 DQVDGGRVGPTMRCLLIDQFKRIRDGN 755
V+ GRVGP + CLL QF++IRDG+
Sbjct: 500 PMVERGRVGPLLACLLGRQFQQIRDGD 526
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Query: 666 HTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPILSSPMAGNIDPF--- 722
++ YRTI G CNN + P GA+ R L YE+G + P G P
Sbjct: 18 NSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGFRVPLARE 77
Query: 723 VGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNID 757
V + +D V R LL Q+ +I D ++D
Sbjct: 78 VSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLD 112
>pdb|2GJM|A Chain A, Crystal Structure Of Buffalo Lactoperoxidase At 2.75a
Resolution
Length = 583
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Query: 516 DLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAV-SLD 574
+L L FF+ WR++ +GG+DPL RG + +K + + EL +KLF H + D
Sbjct: 361 ELPLHTLFFNTWRIIKDGGIDPLTRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFD 420
Query: 575 LAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHP 629
LAA+N+QR RDHG+P YN+WR +CGL + T + L + ++ + KL LY P
Sbjct: 421 LAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTP 475
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 47/68 (69%)
Query: 792 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQAS 851
NID ++G E V+ GRVGP + CLL QF++IRDGDRFW+ENP F Q +++ S
Sbjct: 477 NIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKFS 536
Query: 852 LARVICDS 859
+R+ICD+
Sbjct: 537 FSRLICDN 544
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 887 MVMQWGQFLDHDLDHAIPATSLESWE--GIDCKKSCAFSPPCFPMEVPHDDP 936
+ MQWGQ +DHDLD A P T L S E C++ C CFP+ P +DP
Sbjct: 87 LFMQWGQIVDHDLDFA-PETELGSNEHSKTQCEEYCIQGDNCFPIMFPKNDP 137
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 59/128 (46%), Gaps = 16/128 (12%)
Query: 644 LIANLSGCMEHQR--TANCSDLCFHTKYRT--IDGTCNNLQ----HPMWGA-SLTGFRRL 694
L+A S M + T+ + F ++ D NLQ H M G S GF L
Sbjct: 387 LLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGL 446
Query: 695 LKPIYENGFSTPVA-PILSSPMAG------NIDPFVGAILEDQVDGGRVGPTMRCLLIDQ 747
+P G T + IL+ + NID ++G E V+ GRVGP + CLL Q
Sbjct: 447 SQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQ 506
Query: 748 FKRIRDGN 755
F++IRDG+
Sbjct: 507 FQQIRDGD 514
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Query: 666 HTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPILSSPMAGNIDPF--- 722
++ YRTI G CNN + P GA+ R L YE+G + P G P
Sbjct: 6 NSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGFRVPLARE 65
Query: 723 VGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNID 757
V + +D V R LL Q+ +I D ++D
Sbjct: 66 VSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLD 100
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 90/405 (22%), Positives = 157/405 (38%), Gaps = 37/405 (9%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGD---LHVTV--NAPPIFIQRPVSTTYSTGSTSR 64
L + V R Y C NP R D L+V +AP I P++T+Y +G
Sbjct: 166 LTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTI---SPLNTSYRSGENLN 222
Query: 65 ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 124
++C +P Q +WF +G T++ L + + +++G Y C A NS+
Sbjct: 223 LSCHAASNPPAQYSWFVNG---------TFQQSTQELFIPNITVNNSGSYTCQAHNSDTG 273
Query: 125 AESVAMIRINGHRAPRLVVKPFDMRAPAG-----SSVEIPCKPDGEPLPRISWSKDEAEF 179
+ I + P KPF + +V + C+P+ + + W +++
Sbjct: 274 LNRTTVTTITVYAEPP---KPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLP 330
Query: 180 VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY-LTVTGAPPIFIQRPVS 238
V R + +L L ++ D G Y C N L D ++ L V P P
Sbjct: 331 VSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSY 390
Query: 239 TTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVY 298
T Y G ++C +P Q +W DGN + L ++ + E ++G+Y
Sbjct: 391 TYYRPGVNLSLSCHAASNPPAQYSWLIDGN---------IQQHTQELFISNITEKNSGLY 441
Query: 299 NCVAQNSEG--SAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW 356
C A NS S +V I ++ + +V C+P+ + + W
Sbjct: 442 TCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWW 501
Query: 357 SKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 401
++ V R + +L L+N+ D+ Y C N + +
Sbjct: 502 VNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSAN 546
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 104/407 (25%), Positives = 158/407 (38%), Gaps = 37/407 (9%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNP-AGVYRGDLH-VTVNA--PPIFIQRPVSTTYST 59
++S+ EL I + + G Y+C A N G+ R + +TV A P FI S
Sbjct: 244 QQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVED 303
Query: 60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 119
+TC E + W+ + SL + +D L L V +D G Y C Q
Sbjct: 304 EDAVALTCEPEIQNTTYL-WWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQ 362
Query: 120 N--SEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEA 177
N S ++ V + + G P + P G ++ + C P + SW
Sbjct: 363 NELSVDHSDPVILNVLYGPDDP--TISPSYTYYRPGVNLSLSCHAASNPPAQYSW----- 415
Query: 178 EFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGA---PPIFIQ 234
+ D N + H T L + NI ++SGLY C A+N T+T + P I
Sbjct: 416 --LIDGNIQQH-TQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSIS 472
Query: 235 RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESD 294
S TC E + W+ +G SL + + L L V +D
Sbjct: 473 SNNSKPVEDKDAVAFTCEPEAQNTTYL-WWVNGQSLPVSPRLQLSNGNRTLTLFNVTRND 531
Query: 295 AGVYNCVAQNSEGSAES--VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP 352
A Y C QNS + S V + + G P ++ P D +G+++ + C P P
Sbjct: 532 ARAYVCGIQNSVSANRSDPVTLDVLYGPDTP--IISPPDSSYLSGANLNLSCHSASNPSP 589
Query: 353 RISWSKDEAEFVEDRNHKI--HRTGSLRLYNIGPQDSGLYRCTASNL 397
+ SW R + I T L + I P ++G Y C SNL
Sbjct: 590 QYSW----------RINGIPQQHTQVLFIAKITPNNNGTYACFVSNL 626
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 104/253 (41%), Gaps = 18/253 (7%)
Query: 155 SVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLL 214
+V C+P+ + + W +++ V R + +L L+N+ D+ Y+C N +
Sbjct: 128 AVAFTCEPETQDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPV 187
Query: 215 GEDVAEGY-LTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSD 273
++ L V P P++T+Y +G ++C +P Q +WF +G
Sbjct: 188 SARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNG------ 241
Query: 274 DHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMR 333
T++ L + + +++G Y C A NS+ + I + P KPF
Sbjct: 242 ---TFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPP---KPFITS 295
Query: 334 APAG-----SSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSG 388
+ +V + C+P+ + + W +++ V R + +L L ++ D G
Sbjct: 296 NNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVG 355
Query: 389 LYRCTASNLLGED 401
Y C N L D
Sbjct: 356 PYECGIQNELSVD 368
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 83/328 (25%), Positives = 124/328 (37%), Gaps = 34/328 (10%)
Query: 79 WFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN--SEGSAESVAMIRINGH 136
W+ + SL + + L L V +D Y C QN S ++SV + + G
Sbjct: 144 WWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGP 203
Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLY 196
AP + P + +G ++ + C P + SW FV + T L +
Sbjct: 204 DAP--TISPLNTSYRSGENLNLSCHAASNPPAQYSW------FVNGTFQQ--STQELFIP 253
Query: 197 NIGPQDSGLYRCTASNLLGEDVAEGYLTVTGA------PPIFIQRPVSTTYSTGSTSRIT 250
NI +SG Y C A N D TVT P FI S +T
Sbjct: 254 NITVNNSGSYTCQAHN---SDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALT 310
Query: 251 CLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN--SEGS 308
C E + W+ + SL + +D L L V +D G Y C QN S
Sbjct: 311 CEPEIQNTTYL-WWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDH 369
Query: 309 AESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRN 368
++ V + + G P + P G ++ + C P + SW + D N
Sbjct: 370 SDPVILNVLYGPDDP--TISPSYTYYRPGVNLSLSCHAASNPPAQYSW-------LIDGN 420
Query: 369 HKIHRTGSLRLYNIGPQDSGLYRCTASN 396
+ H T L + NI ++SGLY C A+N
Sbjct: 421 IQQH-TQELFISNITEKNSGLYTCQANN 447
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 79/151 (52%), Gaps = 4/151 (2%)
Query: 67 CLVEGHPLPQMTWFHDGNSLDS-DDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA 125
C VE +P P+++W + + D + +G +L + V +SD G+Y C A N G A
Sbjct: 29 CAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGA 88
Query: 126 -ESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRN 184
ES +++ P++ P +++ G +PC G P P +SW K ++ E+
Sbjct: 89 VESCGALQV--KMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSR 146
Query: 185 HKIHRTGSLRLYNIGPQDSGLYRCTASNLLG 215
+ +GSLR++N+ +D+G YRC A N LG
Sbjct: 147 IAVLESGSLRIHNVQKEDAGQYRCVAKNSLG 177
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 79/151 (52%), Gaps = 4/151 (2%)
Query: 251 CLVEGHPLPQMTWFHDGNSLDS-DDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA 309
C VE +P P+++W + + D + +G +L + V +SD G+Y C A N G A
Sbjct: 29 CAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGA 88
Query: 310 -ESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRN 368
ES +++ P++ P +++ G +PC G P P +SW K ++ E+
Sbjct: 89 VESCGALQV--KMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSR 146
Query: 369 HKIHRTGSLRLYNIGPQDSGLYRCTASNLLG 399
+ +GSLR++N+ +D+G YRC A N LG
Sbjct: 147 IAVLESGSLRIHNVQKEDAGQYRCVAKNSLG 177
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 78/155 (50%), Gaps = 5/155 (3%)
Query: 160 CKPDGEPLPRISWSKDEAEF-VEDRNHKIHRTGSL-RLYNIGPQDSGLYRCTASNLLGED 217
C + P P ISW++++ + D + I G L + ++ D G+Y CTA+N +G
Sbjct: 29 CAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGA 88
Query: 218 VAE-GYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV 276
V G L V P I + P++ G + + C G+P P ++W ++L + +
Sbjct: 89 VESCGALQVKMKPKI-TRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRI 147
Query: 277 TYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES 311
G + + N V++ DAG Y CVA+NS G+A S
Sbjct: 148 AVLESGSLRIHN-VQKEDAGQYRCVAKNSLGTAYS 181
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 2/125 (1%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGN-PAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGST 62
R + L I V+ G Y C A N G + V P + P++ G
Sbjct: 58 RENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLK 117
Query: 63 SRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE 122
+ + C G+P P ++W ++L + + G + + N V++ DAG Y CVA+NS
Sbjct: 118 AVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHN-VQKEDAGQYRCVAKNSL 176
Query: 123 GSAES 127
G+A S
Sbjct: 177 GTAYS 181
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 90/374 (24%), Positives = 147/374 (39%), Gaps = 38/374 (10%)
Query: 65 ITCLVEGHPLPQMTWFHDGN--SLDSDDHVTYEHDGFVLVLN----GVRESDAGVYNCVA 118
I C +G+P P W + ++ D V+ LV++ G E G Y C A
Sbjct: 37 IECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFA 96
Query: 119 QNSEGSAESVAMIRINGHRAPRLVVKPFD-MRAPAGSSVEIPCKPD-GEPLPRISWSKDE 176
+N G+A S IR+ ++P + D + G+ + + C P G P P I W
Sbjct: 97 RNKFGTALS-NRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSS 155
Query: 177 AE-FVEDRNHKIHRTGSLRLYNIGPQDSGL-YRCTASNLLGEDVAEG------YLTVTGA 228
E +D+ G L N+ QD Y C A + + LT G
Sbjct: 156 MEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGV 215
Query: 229 PPIFIQRPVSTTYSTGSTSR----------ITCLVEGHPLPQMTWFHDGNSLDSDDHVTY 278
+R S Y G+ S + C+ G P P + W+ G L SD +
Sbjct: 216 ----AERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSD-KAKF 270
Query: 279 EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGS 338
E+ L + V E D+G Y C+A N GS +R+ AP + +P ++ G
Sbjct: 271 ENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKA--APYWLDEPKNLILAPGE 328
Query: 339 SVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT---GSLRLYNIGPQDSGLYRCTAS 395
+ C+ +G P P + W + E ++ +R ++ + +Y+C S
Sbjct: 329 DGRLVCRANGNPKPTVQWMVN-GEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTS 387
Query: 396 NLLGEDVAEGYLTV 409
N G +A +++V
Sbjct: 388 NEHGYLLANAFVSV 401
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 126/334 (37%), Gaps = 21/334 (6%)
Query: 4 RRSSTELVI----SGVQREHGGRYSCVAGNPAGVYRGD-LHVTVNAPPIFIQRPVS-TTY 57
RR S LVI G E+ G Y C A N G + + + V+ P++ + +
Sbjct: 69 RRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVV 128
Query: 58 STGSTSRITC-LVEGHPLPQMTWFHDG-NSLDSDDHVTYEHDGFVLVLNGVRESDAGVYN 115
G+ + C G P P + W + D V+ H+G + N + + Y+
Sbjct: 129 QEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYS 188
Query: 116 CVA--------QNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPA---GSSVEIPCKPDG 164
C A Q V R R P + + G + + C G
Sbjct: 189 CNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASG 248
Query: 165 EPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT 224
P P I+W K + D+ + +LR+ N+ +DSG Y C ASN +G +
Sbjct: 249 VPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMG-SIRHTISV 307
Query: 225 VTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSD-DHVTYEHDGF 283
A P ++ P + + G R+ C G+P P + W +G L S + E G
Sbjct: 308 RVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGD 367
Query: 284 VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
++ + S VY C N G + A + +
Sbjct: 368 TIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSV 401
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 105/266 (39%), Gaps = 21/266 (7%)
Query: 155 SVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI---HRTGSLRL-YNIG--PQD-SGLYR 207
++ I C+ G P P W+++ F ++ ++ R+G+L + + G P++ G Y+
Sbjct: 34 NILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQ 93
Query: 208 CTASNLLGEDVAEGYLTVTGAPPIFIQRPVS-TTYSTGSTSRITC-LVEGHPLPQMTWFH 265
C A N G ++ P++ + + G+ + C G P P + W
Sbjct: 94 CFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMS 153
Query: 266 DG-NSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVA--------QNSEGSAESVAMIR 316
+ D V+ H+G + N + + Y+C A Q V R
Sbjct: 154 SSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTR 213
Query: 317 INGHRAPRLVVKPFDMRAPA---GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR 373
R P + + G + + C G P P I+W K + D+ +
Sbjct: 214 GVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENF 273
Query: 374 TGSLRLYNIGPQDSGLYRCTASNLLG 399
+LR+ N+ +DSG Y C ASN +G
Sbjct: 274 NKALRITNVSEEDSGEYFCLASNKMG 299
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 91/189 (48%), Gaps = 8/189 (4%)
Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH---RTGSLR 194
AP + + D+ G + ++ C+ G PLP I W + E ++ R +K+ RT +L
Sbjct: 7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLT 66
Query: 195 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTY--STGSTSRITCL 252
+ +D G+Y C A+N +GE L + P P+ Y + GST R+ +
Sbjct: 67 VMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVM 126
Query: 253 VEGHPLPQMTWFHDGNSLDSDDHVTY---EHDGFVLVLNGVRESDAGVYNCVAQNSEGSA 309
G P+P MTWFH L + +++T EH +++ N R++ AG Y N G+
Sbjct: 127 YIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTV 186
Query: 310 ESVAMIRIN 318
+++ + I
Sbjct: 187 DAILDVEIQ 195
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 7/140 (5%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFI-QRPVSTTY-- 57
+ D R+ T L + ++E G Y+C+A N G + + A P F P+ Y
Sbjct: 57 SSDGRTHT-LTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYG 115
Query: 58 STGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTY---EHDGFVLVLNGVRESDAGVY 114
+ GST R+ + G P+P MTWFH L + +++T EH +++ N R++ AG Y
Sbjct: 116 AVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKY 175
Query: 115 NCVAQNSEGSAESVAMIRIN 134
N G+ +++ + I
Sbjct: 176 KVQLSNVFGTVDAILDVEIQ 195
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 76/189 (40%), Gaps = 21/189 (11%)
Query: 225 VTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV 284
++G P + T G ++++C + G PLP + W+ G L DG
Sbjct: 3 MSGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRT 62
Query: 285 LVLNGVRE--SDAGVYNCVAQNSEGSAESVAMIRING----HRAPRLVVKPFDMRAPAGS 338
L + E D GVY C+A N G E+ + + + H L K + GS
Sbjct: 63 HTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYY---GAVGS 119
Query: 339 SVEIPCKPDGEPLPRISW-------SKDEAEFVEDRNHKIHRTGSLRLYNIGPQD-SGLY 390
++ + G P+P ++W E +E+ H H L + N+ + +G Y
Sbjct: 120 TLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTH----LVMKNVQRKTHAGKY 175
Query: 391 RCTASNLLG 399
+ SN+ G
Sbjct: 176 KVQLSNVFG 184
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 21/174 (12%)
Query: 56 TYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRE--SDAGV 113
T G ++++C + G PLP + W+ G L DG L + E D GV
Sbjct: 18 TTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGV 77
Query: 114 YNCVAQNSEGSAESVAMIRING----HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPR 169
Y C+A N G E+ + + + H L K + GS++ + G P+P
Sbjct: 78 YTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYY---GAVGSTLRLHVMYIGRPVPA 134
Query: 170 ISW-------SKDEAEFVEDRNHKIHRTGSLRLYNIGPQD-SGLYRCTASNLLG 215
++W E +E+ H H L + N+ + +G Y+ SN+ G
Sbjct: 135 MTWFHGQKLLQNSENITIENTEHYTH----LVMKNVQRKTHAGKYKVQLSNVFG 184
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH---RTGSLR 378
AP + + D+ G + ++ C+ G PLP I W + E ++ R +K+ RT +L
Sbjct: 7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLT 66
Query: 379 LYNIGPQDSGLYRCTASNLLGE 400
+ +D G+Y C A+N +GE
Sbjct: 67 VMTEEQEDEGVYTCIATNEVGE 88
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 113/269 (42%), Gaps = 12/269 (4%)
Query: 58 STGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEHDGFV--LVLNGVRESDAGVY 114
S G + TC G P + W++ G + S V + +G L + DAG+Y
Sbjct: 17 SVGESKFFTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIY 75
Query: 115 NCVAQNSEG-SAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW- 172
C A +++G + E+ ++ I R VV P + + G E+ C+ P P +SW
Sbjct: 76 RCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQ--GEDAEVVCRVSSSPAPAVSWL 133
Query: 173 -SKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTAS-NLLGEDVAEGYLTVTGAPP 230
+E + D + +L++ NI D G+YRC GE + + PP
Sbjct: 134 YHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPP 193
Query: 231 IFI--QRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLN 288
Q+ + T G +C G P P ++WF +G ++ ++ + L +
Sbjct: 194 AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVR 253
Query: 289 GVRESDAGVYNCVAQNSEGSAESVAMIRI 317
+ SD G Y C A N G E A +++
Sbjct: 254 NIINSDGGPYVCRATNKAGEDEKQAFLQV 282
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 120/278 (43%), Gaps = 35/278 (12%)
Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAE-FVEDRNHKIHRTG---SLRLYNIGPQDSGLYRC 208
G S C GEP I W + E + + + + G L +YN +D+G+YRC
Sbjct: 19 GESKFFTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRC 77
Query: 209 TASNLLGEDVAEGYLTVTGAPPIFIQRPVS-TTYSTGSTSRITCLVEGHPLPQMTWFHDG 267
A++ G+ E + + + + VS + G + + C V P P ++W +
Sbjct: 78 QATDAKGQ-TQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYH- 135
Query: 268 NSLDSDDHVTYEHDGFVLV------LNGVRESDAGVYNCVAQNSEGSAESVA-------M 314
+++ T + F ++ + + +SD G+Y C EG E+ +
Sbjct: 136 ----NEEVTTISDNRFAMLANNNLQILNINKSDEGIYRC-----EGRVEARGEIDFRDII 186
Query: 315 IRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT 374
+ +N A + K F+ A G + C+ G P P ISW ++ + +E+ N K
Sbjct: 187 VIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRN-GKLIEE-NEKYILK 244
Query: 375 GS---LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
GS L + NI D G Y C A+N GED + +L V
Sbjct: 245 GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 97/235 (41%), Gaps = 29/235 (12%)
Query: 8 TELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVS-TTYSTGSTSRIT 66
+ L I E G Y C A + G + V + + VS + G + +
Sbjct: 60 SRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVV 119
Query: 67 CLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLV------LNGVRESDAGVYNCVAQN 120
C V P P ++W + +++ T + F ++ + + +SD G+Y C
Sbjct: 120 CRVSSSPAPAVSWLY-----HNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRC---- 170
Query: 121 SEGSAESVA-------MIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWS 173
EG E+ ++ +N A + K F+ A G + C+ G P P ISW
Sbjct: 171 -EGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWF 229
Query: 174 KDEAEFVEDRNHKIHRTGS---LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
++ + +E+ N K GS L + NI D G Y C A+N GED + +L V
Sbjct: 230 RN-GKLIEE-NEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 9/157 (5%)
Query: 242 STGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEHDGFV--LVLNGVRESDAGVY 298
S G + TC G P + W++ G + S V + +G L + DAG+Y
Sbjct: 17 SVGESKFFTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIY 75
Query: 299 NCVAQNSEG-SAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW- 356
C A +++G + E+ ++ I R VV P + + G E+ C+ P P +SW
Sbjct: 76 RCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQ--GEDAEVVCRVSSSPAPAVSWL 133
Query: 357 -SKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRC 392
+E + D + +L++ NI D G+YRC
Sbjct: 134 YHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRC 170
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 101/487 (20%), Positives = 177/487 (36%), Gaps = 89/487 (18%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIF-----IQRPVST 55
++ ++ + L I GV R G Y+C A + + V V+ P ++ V
Sbjct: 283 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEA 342
Query: 56 TYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYN 115
T G RI G+P P++ W+ +G L+S+ + G VL + V E D G Y
Sbjct: 343 T--VGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTI---KAGHVLTIMEVSERDTGNYT 397
Query: 116 CVAQNSEGSAESVAMIRINGHRAPRL----VVKPFDMRAPAGSSVEIPCKPDGEPLP--- 168
+ N + ++ + + P++ ++ P D G++ + C P P
Sbjct: 398 VILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVD-SYQYGTTQTLTCTVYAIPPPHHI 456
Query: 169 ---------------------------------------RISWSKDEAEFVEDRNHKIHR 189
+I +K++ +E +N +
Sbjct: 457 HWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVS- 515
Query: 190 TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRI 249
T ++ N+ S LY+C A N +G VT P I +Q + T + +
Sbjct: 516 TLVIQAANV----SALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQ--ESVSL 569
Query: 250 TCLVEGHPLPQMTWF---------HDGN-------------SLDSDDHVTYEHDGFVLVL 287
C + +TW+ H G L++ +D ++ L
Sbjct: 570 WCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMEL 629
Query: 288 NGVRESDAGVYNCVAQNSEGSAES--VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK 345
D G Y C+AQ+ + V + + AP + + G S+E+ C
Sbjct: 630 KNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCT 689
Query: 346 PDGEPLPRISWSKDEAEFVEDRNHKIHRTG-SLRLYNIGPQDSGLYRCTASNLLGEDVAE 404
G P P+I W KD VED + +L + + +D GLY C A ++LG E
Sbjct: 690 ASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVE 749
Query: 405 GYLTVTG 411
+ + G
Sbjct: 750 AFFIIEG 756
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 89/235 (37%), Gaps = 34/235 (14%)
Query: 23 YSCVAGNPAGVYRGD----LHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMT 78
Y C A N G RG+ HVT P I +Q + T + + C + +T
Sbjct: 528 YKCEAVNKVG--RGERVISFHVT-RGPEITLQPDMQPTEQ--ESVSLWCTADRSTFENLT 582
Query: 79 WF---------HDGN-------------SLDSDDHVTYEHDGFVLVLNGVRESDAGVYNC 116
W+ H G L++ +D ++ L D G Y C
Sbjct: 583 WYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVC 642
Query: 117 VAQNSEGSAES--VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSK 174
+AQ+ + V + + AP + + G S+E+ C G P P+I W K
Sbjct: 643 LAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFK 702
Query: 175 DEAEFVEDRNHKIHRTG-SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGA 228
D VED + +L + + +D GLY C A ++LG E + + GA
Sbjct: 703 DNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGA 757
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 83/425 (19%), Positives = 163/425 (38%), Gaps = 81/425 (19%)
Query: 75 PQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVA-MIRI 133
P+ + DGN + D + +++ S AG+ C A+ ++ S +S+ ++ +
Sbjct: 166 PEKRFVPDGNRISWDSKKGFTIPSYMI-------SYAGMVFCEAKINDESYQSIMYIVVV 218
Query: 134 NGHRAPRLVVKP-FDMRAPAGSSVEIPCKPDGEPLPRI--SW----SKDEAEFVEDRNHK 186
G+R +V+ P + G + + C E I +W SK + + + +R+ K
Sbjct: 219 VGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLK 278
Query: 187 IHRTGSLRLY-------NIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVST 239
++ + + D GLY C AS+ L ++ V P + + +
Sbjct: 279 TQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMES 338
Query: 240 TY--STGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGV 297
+ G RI G+P P++ W+ +G L+S+ + G VL + V E D G
Sbjct: 339 LVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTI---KAGHVLTIMEVSERDTGN 395
Query: 298 YNCVAQNSEGSAESVAMIRINGHRAPRL----VVKPFDMRAPAGSSVEIPCKPDGEPLP- 352
Y + N + ++ + + P++ ++ P D G++ + C P P
Sbjct: 396 YTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVD-SYQYGTTQTLTCTVYAIPPPH 454
Query: 353 -----------------------------------------RISWSKDEAEFVEDRNHKI 371
+I +K++ +E +N +
Sbjct: 455 HIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTV 514
Query: 372 HRTGSLRLYNIGPQDSGLYRCTASNLL--GEDVAEGYLTVTGENSVEPAPHTSREPSASK 429
T ++ N+ S LY+C A N + GE V ++T E +++P + + S S
Sbjct: 515 S-TLVIQAANV----SALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSL 569
Query: 430 PSVAD 434
AD
Sbjct: 570 WCTAD 574
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 134/347 (38%), Gaps = 41/347 (11%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYST---G 60
R+ LV Q G Y C A PAGV V I P T T G
Sbjct: 58 RKDEGSLVFLRPQASDEGHYQCFAETPAGV--ASSRVISFRKTYLIASPAKTHEKTPIEG 115
Query: 61 STSRITCLV-EGHPLPQMTWFH-------DGNSLDSDDHVTYEHDG--FVLVLNGVRESD 110
++ C++ +P P +TW + + D D +T DG + ++ SD
Sbjct: 116 RPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSD 175
Query: 111 AGVYNCVAQNSEGSAESVAMIRI------------NGHRAPRLVVKPFDMRAPAGSSVEI 158
Y C A+N+ E V ++ G P+ V K DM A AG I
Sbjct: 176 IYKYVCTAKNA-AVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSK--DMMAKAGDVTMI 232
Query: 159 PCKPDGEPLPRISWSKDEAEFV---EDRNHKIHRTGSLRLY--NIGPQDSGLYRCTASNL 213
C P+ ++ K+ + EDR + +RT RL P+D G+Y C N
Sbjct: 233 YCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNG 292
Query: 214 LGEDVAEGY-LTVTGAPPIFIQRPVST-TYSTGSTSRITCLVEGHPLPQMTWFHDGNSLD 271
+G+ LTV AP + Q+P G I C V G P P + W H+ L
Sbjct: 293 VGKPQKHSLKLTVVSAPK-YEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL- 350
Query: 272 SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 318
S T G LV+ GV+ D G Y C A N G ++++N
Sbjct: 351 SGGRATVTDSG--LVIKGVKNGDKGYYGCRATNEHGDKYFETLVQVN 395
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 97/401 (24%), Positives = 162/401 (40%), Gaps = 42/401 (10%)
Query: 42 VNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDH-VTYEHDGF 99
V+ P+ +P + + + + C++EG+ + +W DG S + +H D
Sbjct: 3 VDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEG 62
Query: 100 VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDM--RAP-AGSSV 156
LV + SD G Y C A+ G A S R+ R L+ P + P G
Sbjct: 63 SLVFLRPQASDEGHYQCFAETPAGVASS----RVISFRKTYLIASPAKTHEKTPIEGRPF 118
Query: 157 EIPCK-PDGEPLPRISWSK-----DEAEFVEDRNHKIHR--TGSLRLYNIGPQD-SGLYR 207
++ C P+ P P I+W K D V D + +I G+L + +D S +Y+
Sbjct: 119 QLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYK 178
Query: 208 --CTASNL-LGEDVAEGYLTVTGAP-----------PIFIQRPVSTTYSTGSTSRITCLV 253
CTA N + E+V + G P ++ + + G + I C+
Sbjct: 179 YVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMA--KAGDVTMIYCMY 236
Query: 254 EGHPLPQMTWFHDGNSLDS--DDHVTYEH--DGFVLVLNGVRESDAGVYNCVAQNSEGSA 309
+P+ +F +G ++ +D +T + G L+ D GVY C N G
Sbjct: 237 GSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKP 296
Query: 310 ESVAMIRINGHRAPRLVVKPFD-MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRN 368
+ ++ ++ AP+ KP + G V IPCK G P P + WS + R
Sbjct: 297 QKHSL-KLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGR- 354
Query: 369 HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
+ +G L + + D G Y C A+N G+ E + V
Sbjct: 355 ATVTDSG-LVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 56/134 (41%), Gaps = 5/134 (3%)
Query: 3 DRRSSTELVISGVQREHGGRYSCVAGNPAGV-YRGDLHVTVNAPPIFIQRPVST-TYSTG 60
+R S L+ E G Y+C N G + L +TV + P + Q+P G
Sbjct: 265 NRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQG 324
Query: 61 STSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN 120
I C V G P P + W H+ L S T G LV+ GV+ D G Y C A N
Sbjct: 325 QDVTIPCKVTGLPAPNVVWSHNAKPL-SGGRATVTDSG--LVIKGVKNGDKGYYGCRATN 381
Query: 121 SEGSAESVAMIRIN 134
G ++++N
Sbjct: 382 EHGDKYFETLVQVN 395
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 84/332 (25%), Positives = 138/332 (41%), Gaps = 47/332 (14%)
Query: 16 QREHGGRYSCVAGNPAG-VYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPL 74
Q H Y+C+A N G + D+HV + G+++ I CL+
Sbjct: 79 QEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSF-- 136
Query: 75 PQMTWFHDGNSLDSDDHVTY----EHDGFVLVLNG----VRE----SDAGVYNCVAQN-- 120
+ F + S +D+ Y E+DG LVL +RE Y C ++
Sbjct: 137 --VADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRL 194
Query: 121 --------SEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW 172
++G I + R P LV KP ++ ++ + C G P P W
Sbjct: 195 TGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMV--AHTISLLCPAQGFPAPSFRW 252
Query: 173 SK-------DEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
K +A + DR ++ +G+L + + +DSG Y C +N +G + E LTV
Sbjct: 253 YKFIEGTTRKQAVVLNDRVKQV--SGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV 310
Query: 226 TGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVL 285
T AP P + T G + TC G+P+ ++W DG ++ H VL
Sbjct: 311 T-APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIG--------HSESVL 361
Query: 286 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
+ V++ D G+Y C +N SAE+ A +++
Sbjct: 362 RIESVKKEDKGMYQCFVRNDRESAEASAELKL 393
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 99/388 (25%), Positives = 160/388 (41%), Gaps = 54/388 (13%)
Query: 46 PIFIQRPVSTT-YSTGSTSRITCLVEGHPLPQMTWFH-DGNSL-DSDDHVTYEHDGFVLV 102
P+F++ P + +S + + I C G+P+P++ W DG ++ D DG LV
Sbjct: 10 PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDG-KLV 68
Query: 103 LNGVRESD------AGVYNCVAQNSEGS--AESVAMIRINGHRAPRLVVKPFDMRAPAGS 154
R D A VY C+A+N GS + V + + V K +R G+
Sbjct: 69 FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIR---GN 125
Query: 155 SVEIPCK-PD--GEPLPRISWSKDEAEFV-----EDRNHKIHRTGSLRLYNIGPQDS-GL 205
S I C P + + +SW DE E D + + +G L + +GP+D
Sbjct: 126 SAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKS 185
Query: 206 YRC-TASNLLGE---DVAEGYLTVT-----GAP--PIFIQRPVSTTYSTGSTSRITCLVE 254
Y+C T L GE +G L +T AP P +Q+P+ T + C +
Sbjct: 186 YQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELM--VAHTISLLCPAQ 243
Query: 255 GHPLPQMTW--FHDGNSLDS----DDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 308
G P P W F +G + +D V + G +++ + V E D+G Y CV NS G
Sbjct: 244 GFPAPSFRWYKFIEGTTRKQAVVLNDRVK-QVSGTLIIKDAVVE-DSGKYLCVVNNSVGG 301
Query: 309 AESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRN 368
++ + + + + P G C+ G P+ +SW KD
Sbjct: 302 ESVETVLTVTAPLSAK--IDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIG---- 355
Query: 369 HKIHRTGSLRLYNIGPQDSGLYRCTASN 396
H LR+ ++ +D G+Y+C N
Sbjct: 356 ---HSESVLRIESVKKEDKGMYQCFVRN 380
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 8/130 (6%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTS 63
++ S L+I E G+Y CV N G + +TV AP P + T G +
Sbjct: 272 KQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPA 331
Query: 64 RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG 123
TC G+P+ ++W DG ++ H VL + V++ D G+Y C +N
Sbjct: 332 VFTCQYTGNPIKTVSWMKDGKAIG--------HSESVLRIESVKKEDKGMYQCFVRNDRE 383
Query: 124 SAESVAMIRI 133
SAE+ A +++
Sbjct: 384 SAEASAELKL 393
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 85/369 (23%), Positives = 139/369 (37%), Gaps = 47/369 (12%)
Query: 154 SSVEIPCKPDGEPLPRISWSKDEAEFVEDRN--HKIHRTGSLRLYNIGPQD------SGL 205
+ EI CK G P+P I W + + V D +I G L +D + +
Sbjct: 26 TGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQV 85
Query: 206 YRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYST-GSTSRITCLVEGHPLPQMTWF 264
Y C A N G ++ + V + + V+ + G+++ I CL+ + F
Sbjct: 86 YACLARNQFGSIISRD-VHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSF----VADF 140
Query: 265 HDGNSLDSDDHVTY----EHDGFVLVLNG----VRE----SDAGVYNCVAQN-------- 304
+ S +D+ Y E+DG LVL +RE Y C ++
Sbjct: 141 VEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRL 200
Query: 305 --SEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSK---- 358
++G I + R P LV KP ++ ++ + C G P P W K
Sbjct: 201 SATKGRLVITEPISSSAPRTPALVQKPLELMV--AHTISLLCPAQGFPAPSFRWYKFIEG 258
Query: 359 ---DEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSV 415
+A + DR ++ +G+L + + +DSG Y C +N +G + E LTVT S
Sbjct: 259 TTRKQAVVLNDRVKQV--SGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSA 316
Query: 416 EPAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVNATINSLFGYHSNEQQDHGSLMK 475
+ P T +K S D S+ S +++D G
Sbjct: 317 KIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQC 376
Query: 476 LLRFPDESA 484
+R ESA
Sbjct: 377 FVRNDRESA 385
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 84/332 (25%), Positives = 138/332 (41%), Gaps = 47/332 (14%)
Query: 16 QREHGGRYSCVAGNPAG-VYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPL 74
Q H Y+C+A N G + D+HV + G+++ I CL+
Sbjct: 73 QEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSF-- 130
Query: 75 PQMTWFHDGNSLDSDDHVTY----EHDGFVLVLNG----VRE----SDAGVYNCVAQN-- 120
+ F + S +D+ Y E+DG LVL +RE Y C ++
Sbjct: 131 --VADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRL 188
Query: 121 --------SEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW 172
++G I + R P LV KP ++ ++ + C G P P W
Sbjct: 189 TGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMV--AHTISLLCPAQGFPAPSFRW 246
Query: 173 SK-------DEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
K +A + DR ++ +G+L + + +DSG Y C +N +G + E LTV
Sbjct: 247 YKFIEGTTRKQAVVLNDRVKQV--SGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV 304
Query: 226 TGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVL 285
T AP P + T G + TC G+P+ ++W DG ++ H VL
Sbjct: 305 T-APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIG--------HSESVL 355
Query: 286 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
+ V++ D G+Y C +N SAE+ A +++
Sbjct: 356 RIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 99/388 (25%), Positives = 160/388 (41%), Gaps = 54/388 (13%)
Query: 46 PIFIQRPVSTT-YSTGSTSRITCLVEGHPLPQMTWFH-DGNSL-DSDDHVTYEHDGFVLV 102
P+F++ P + +S + + I C G+P+P++ W DG ++ D DG LV
Sbjct: 4 PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDG-KLV 62
Query: 103 LNGVRESD------AGVYNCVAQNSEGS--AESVAMIRINGHRAPRLVVKPFDMRAPAGS 154
R D A VY C+A+N GS + V + + V K +R G+
Sbjct: 63 FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIR---GN 119
Query: 155 SVEIPCK-PD--GEPLPRISWSKDEAEFV-----EDRNHKIHRTGSLRLYNIGPQDS-GL 205
S I C P + + +SW DE E D + + +G L + +GP+D
Sbjct: 120 SAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKS 179
Query: 206 YRC-TASNLLGE---DVAEGYLTVT-----GAP--PIFIQRPVSTTYSTGSTSRITCLVE 254
Y+C T L GE +G L +T AP P +Q+P+ T + C +
Sbjct: 180 YQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELM--VAHTISLLCPAQ 237
Query: 255 GHPLPQMTW--FHDGNSLDS----DDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 308
G P P W F +G + +D V + G +++ + V E D+G Y CV NS G
Sbjct: 238 GFPAPSFRWYKFIEGTTRKQAVVLNDRVK-QVSGTLIIKDAVVE-DSGKYLCVVNNSVGG 295
Query: 309 AESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRN 368
++ + + + + P G C+ G P+ +SW KD
Sbjct: 296 ESVETVLTVTAPLSAK--IDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIG---- 349
Query: 369 HKIHRTGSLRLYNIGPQDSGLYRCTASN 396
H LR+ ++ +D G+Y+C N
Sbjct: 350 ---HSESVLRIESVKKEDKGMYQCFVRN 374
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 8/130 (6%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTS 63
++ S L+I E G+Y CV N G + +TV AP P + T G +
Sbjct: 266 KQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPA 325
Query: 64 RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG 123
TC G+P+ ++W DG ++ H VL + V++ D G+Y C +N
Sbjct: 326 VFTCQYTGNPIKTVSWMKDGKAIG--------HSESVLRIESVKKEDKGMYQCFVRNDRE 377
Query: 124 SAESVAMIRI 133
SAE+ A +++
Sbjct: 378 SAEASAELKL 387
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 85/369 (23%), Positives = 139/369 (37%), Gaps = 47/369 (12%)
Query: 154 SSVEIPCKPDGEPLPRISWSKDEAEFVEDRN--HKIHRTGSLRLYNIGPQD------SGL 205
+ EI CK G P+P I W + + V D +I G L +D + +
Sbjct: 20 TGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQV 79
Query: 206 YRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYST-GSTSRITCLVEGHPLPQMTWF 264
Y C A N G ++ + V + + V+ + G+++ I CL+ + F
Sbjct: 80 YACLARNQFGSIISRD-VHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSF----VADF 134
Query: 265 HDGNSLDSDDHVTY----EHDGFVLVLNG----VRE----SDAGVYNCVAQN-------- 304
+ S +D+ Y E+DG LVL +RE Y C ++
Sbjct: 135 VEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRL 194
Query: 305 --SEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSK---- 358
++G I + R P LV KP ++ ++ + C G P P W K
Sbjct: 195 SATKGRLVITEPISSSAPRTPALVQKPLELMV--AHTISLLCPAQGFPAPSFRWYKFIEG 252
Query: 359 ---DEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSV 415
+A + DR ++ +G+L + + +DSG Y C +N +G + E LTVT S
Sbjct: 253 TTRKQAVVLNDRVKQV--SGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSA 310
Query: 416 EPAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVNATINSLFGYHSNEQQDHGSLMK 475
+ P T +K S D S+ S +++D G
Sbjct: 311 KIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQC 370
Query: 476 LLRFPDESA 484
+R ESA
Sbjct: 371 FVRNDRESA 379
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 90/190 (47%), Gaps = 27/190 (14%)
Query: 144 KPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS---LRLYNIGP 200
K F+ A G + C+ G P P ISW ++ + +E+ N K GS L + NI
Sbjct: 10 KSFNATAERGEEMTFSCRASGSPEPAISWFRN-GKLIEE-NEKYILKGSNTELTVRNIIN 67
Query: 201 QDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQ 260
D G Y C A+N GED + +L V P I IQ TTY G + + C EG P+P+
Sbjct: 68 SDGGPYVCRATNKAGEDEKQAFLQVFVQPHI-IQLKNETTYENGQVT-LVCDAEGEPIPE 125
Query: 261 MTW--------FHDGN-SLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES 311
+TW F +G+ SLD V +H L + V+ SD+G Y+C A +
Sbjct: 126 ITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAAS------- 178
Query: 312 VAMIRINGHR 321
RI GH+
Sbjct: 179 ----RIGGHQ 184
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 13/186 (6%)
Query: 50 QRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRES 109
Q+ + T G +C G P P ++WF +G ++ ++ + L + + S
Sbjct: 9 QKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINS 68
Query: 110 DAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPR 169
D G Y C A N G E A +++ P ++ + G V + C +GEP+P
Sbjct: 69 DGGPYVCRATNKAGEDEKQAFLQV--FVQPHIIQLKNETTYENG-QVTLVCDAEGEPIPE 125
Query: 170 ISWSK--DEAEFVE-DRN-------HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA 219
I+W + D F E D++ H + SL + ++ DSG Y C A++ +G
Sbjct: 126 ITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQK 185
Query: 220 EGYLTV 225
YL +
Sbjct: 186 SMYLDI 191
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 13/186 (6%)
Query: 234 QRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRES 293
Q+ + T G +C G P P ++WF +G ++ ++ + L + + S
Sbjct: 9 QKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINS 68
Query: 294 DAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPR 353
D G Y C A N G E A +++ P ++ + G V + C +GEP+P
Sbjct: 69 DGGPYVCRATNKAGEDEKQAFLQV--FVQPHIIQLKNETTYENG-QVTLVCDAEGEPIPE 125
Query: 354 ISWSK--DEAEFVE-DRN-------HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA 403
I+W + D F E D++ H + SL + ++ DSG Y C A++ +G
Sbjct: 126 ITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQK 185
Query: 404 EGYLTV 409
YL +
Sbjct: 186 SMYLDI 191
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 65/143 (45%), Gaps = 21/143 (14%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTS 63
+ S+TEL + + GG Y C A N AG + V P IQ TTY G +
Sbjct: 54 KGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYENGQVT 113
Query: 64 RITCLVEGHPLPQMTW--------FHDGN-SLDSDDHVTYEHDGFVLVLNGVRESDAGVY 114
+ C EG P+P++TW F +G+ SLD V +H L + V+ SD+G Y
Sbjct: 114 -LVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRY 172
Query: 115 NCVAQNSEGSAESVAMIRINGHR 137
+C A + RI GH+
Sbjct: 173 DCEAAS-----------RIGGHQ 184
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 83/191 (43%), Gaps = 27/191 (14%)
Query: 46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD---HVTYEHDG---F 99
P I+ P + + C VEG P P + WF DG + +++ H DG F
Sbjct: 10 PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFF 69
Query: 100 VLVLNGVRESDAGVYNCVAQNSEGSAES------VAMIRINGHRAPRLVVKPFDMRAPAG 153
+ G +E D G Y CVA+N G A S +A++R + V+P D R G
Sbjct: 70 YRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDD------FRVEPKDTRVAKG 123
Query: 154 SSVEIPC-KPDGEPLPRISWSKD--------EAEFVEDRNHKIHRTGSLRLYNIGPQDSG 204
+ + C P G P P + W KD F +I G+L + N+ P D G
Sbjct: 124 ETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEG 183
Query: 205 LYRCTASNLLG 215
Y+C A NL+G
Sbjct: 184 NYKCIAQNLVG 194
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 83/191 (43%), Gaps = 27/191 (14%)
Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD---HVTYEHDG---F 283
P I+ P + + C VEG P P + WF DG + +++ H DG F
Sbjct: 10 PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFF 69
Query: 284 VLVLNGVRESDAGVYNCVAQNSEGSAES------VAMIRINGHRAPRLVVKPFDMRAPAG 337
+ G +E D G Y CVA+N G A S +A++R + V+P D R G
Sbjct: 70 YRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDD------FRVEPKDTRVAKG 123
Query: 338 SSVEIPC-KPDGEPLPRISWSKD--------EAEFVEDRNHKIHRTGSLRLYNIGPQDSG 388
+ + C P G P P + W KD F +I G+L + N+ P D G
Sbjct: 124 ETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEG 183
Query: 389 LYRCTASNLLG 399
Y+C A NL+G
Sbjct: 184 NYKCIAQNLVG 194
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 86/193 (44%), Gaps = 18/193 (9%)
Query: 136 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT----G 191
+++PR++ P D+ + CK +G+P P I W KD E V K HR G
Sbjct: 7 YQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKD-GEPVSTNEKKSHRVQFKDG 65
Query: 192 SLRLYNI----GPQDSGLYRCTASNLLGEDVAE-GYLTVTGAPPIFIQRPVSTTYSTGST 246
+L Y QD G Y C A N +G+ V+ L + F P T + G T
Sbjct: 66 ALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGET 125
Query: 247 SRITC-LVEGHPLPQMTWFHDGNSLDSDDHVTYEH-------DGFVLVLNGVRESDAGVY 298
+ + C +G P P + W DG LD +++ DG L+++ V D G Y
Sbjct: 126 ALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNY 185
Query: 299 NCVAQNSEGSAES 311
C+AQN G+ ES
Sbjct: 186 KCIAQNLVGTRES 198
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 59/127 (46%), Gaps = 12/127 (9%)
Query: 12 ISGVQREHGGRYSCVAGNPAG--VYR-GDLHVTVNAPPIFIQRPVSTTYSTGSTSRITC- 67
+ G + + GG Y CVA N G V R L + V ++ P T + G T+ + C
Sbjct: 73 MQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVE-PKDTRVAKGETALLECG 131
Query: 68 LVEGHPLPQMTWFHDGNSLDSDDHVTYEH-------DGFVLVLNGVRESDAGVYNCVAQN 120
+G P P + W DG LD +++ DG L+++ V D G Y C+AQN
Sbjct: 132 PPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQN 191
Query: 121 SEGSAES 127
G+ ES
Sbjct: 192 LVGTRES 198
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 320 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT----G 375
+++PR++ P D+ + CK +G+P P I W KD E V K HR G
Sbjct: 7 YQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKD-GEPVSTNEKKSHRVQFKDG 65
Query: 376 SLRLYNI----GPQDSGLYRCTASNLLGEDVA 403
+L Y QD G Y C A N +G+ V+
Sbjct: 66 ALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVS 97
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 83/191 (43%), Gaps = 27/191 (14%)
Query: 46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD---HVTYEHDG---F 99
P I+ P + + C VEG P P + WF DG + +++ H DG F
Sbjct: 10 PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFF 69
Query: 100 VLVLNGVRESDAGVYNCVAQNSEGSAES------VAMIRINGHRAPRLVVKPFDMRAPAG 153
+ G +E D G Y CVA+N G A S +A++R + V+P D R G
Sbjct: 70 YRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDD------FRVEPKDTRVAKG 123
Query: 154 SSVEIPC-KPDGEPLPRISWSKD--------EAEFVEDRNHKIHRTGSLRLYNIGPQDSG 204
+ + C P G P P + W KD F +I G+L + N+ P D G
Sbjct: 124 ETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEG 183
Query: 205 LYRCTASNLLG 215
Y+C A NL+G
Sbjct: 184 NYKCIAQNLVG 194
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 83/191 (43%), Gaps = 27/191 (14%)
Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD---HVTYEHDG---F 283
P I+ P + + C VEG P P + WF DG + +++ H DG F
Sbjct: 10 PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFF 69
Query: 284 VLVLNGVRESDAGVYNCVAQNSEGSAES------VAMIRINGHRAPRLVVKPFDMRAPAG 337
+ G +E D G Y CVA+N G A S +A++R + V+P D R G
Sbjct: 70 YRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDD------FRVEPKDTRVAKG 123
Query: 338 SSVEIPC-KPDGEPLPRISWSKD--------EAEFVEDRNHKIHRTGSLRLYNIGPQDSG 388
+ + C P G P P + W KD F +I G+L + N+ P D G
Sbjct: 124 ETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEG 183
Query: 389 LYRCTASNLLG 399
Y+C A NL+G
Sbjct: 184 NYKCIAQNLVG 194
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 86/193 (44%), Gaps = 18/193 (9%)
Query: 136 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT----G 191
+++PR++ P D+ + CK +G+P P I W KD E V K HR G
Sbjct: 7 YQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKD-GEPVSTNEKKSHRVQFKDG 65
Query: 192 SLRLYNI----GPQDSGLYRCTASNLLGEDVAE-GYLTVTGAPPIFIQRPVSTTYSTGST 246
+L Y QD G Y C A N +G+ V+ L + F P T + G T
Sbjct: 66 ALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGET 125
Query: 247 SRITC-LVEGHPLPQMTWFHDGNSLDSDDHVTYEH-------DGFVLVLNGVRESDAGVY 298
+ + C +G P P + W DG LD +++ DG L+++ V D G Y
Sbjct: 126 ALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNY 185
Query: 299 NCVAQNSEGSAES 311
C+AQN G+ ES
Sbjct: 186 KCIAQNLVGTRES 198
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 59/127 (46%), Gaps = 12/127 (9%)
Query: 12 ISGVQREHGGRYSCVAGNPAG--VYR-GDLHVTVNAPPIFIQRPVSTTYSTGSTSRITC- 67
+ G + + GG Y CVA N G V R L + V ++ P T + G T+ + C
Sbjct: 73 MQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVE-PKDTRVAKGETALLECG 131
Query: 68 LVEGHPLPQMTWFHDGNSLDSDDHVTYEH-------DGFVLVLNGVRESDAGVYNCVAQN 120
+G P P + W DG LD +++ DG L+++ V D G Y C+AQN
Sbjct: 132 PPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQN 191
Query: 121 SEGSAES 127
G+ ES
Sbjct: 192 LVGTRES 198
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 320 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT----G 375
+++PR++ P D+ + CK +G+P P I W KD E V K HR G
Sbjct: 7 YQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKD-GEPVSTNEKKSHRVQFKDG 65
Query: 376 SLRLYNI----GPQDSGLYRCTASNLLGEDVA 403
+L Y QD G Y C A N +G+ V+
Sbjct: 66 ALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVS 97
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 80.9 bits (198), Expect = 3e-15, Method: Composition-based stats.
Identities = 55/200 (27%), Positives = 89/200 (44%), Gaps = 8/200 (4%)
Query: 225 VTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD----HVTYEH 280
+T P F Q S GST+ + G P+P+++WF DG + + +++
Sbjct: 1 MTTQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSD 60
Query: 281 DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRA-PRLVVKPFDMRAPAGSS 339
L + V ++++G Y+ A N G A S A + + A P V + M GS
Sbjct: 61 GRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQ 120
Query: 340 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASN 396
V + + G P P + + +D AE + +I + G SL + P+DSG Y A+N
Sbjct: 121 VRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATN 180
Query: 397 LLGEDVAEGYLTVTGENSVE 416
+G + L V GE E
Sbjct: 181 SVGRATSTAELLVQGETREE 200
Score = 77.4 bits (189), Expect = 3e-14, Method: Composition-based stats.
Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 8/190 (4%)
Query: 46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD----HVTYEHDGFVL 101
P F Q S GST+ + G P+P+++WF DG + + +++ L
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKL 65
Query: 102 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRA-PRLVVKPFDMRAPAGSSVEIPC 160
+ V ++++G Y+ A N G A S A + + A P V + M GS V +
Sbjct: 66 TIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQV 125
Query: 161 KPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGED 217
+ G P P + + +D AE + +I + G SL + P+DSG Y A+N +G
Sbjct: 126 RVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRA 185
Query: 218 VAEGYLTVTG 227
+ L V G
Sbjct: 186 TSTAELLVQG 195
Score = 67.8 bits (164), Expect = 3e-11, Method: Composition-based stats.
Identities = 52/183 (28%), Positives = 79/183 (43%), Gaps = 23/183 (12%)
Query: 153 GSSVEIPCKPDGEPLPRISWSKD------------EAEFVEDRNHKIHRTGSLRLYNIGP 200
GS+ G P+P +SW +D + F + R L + +
Sbjct: 20 GSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGR-------AKLTIPAVTK 72
Query: 201 QDSGLYRCTASNLLGEDVAEGYLTVTG--APPIFIQRPVSTTYSTGSTSRITCLVEGHPL 258
+SG Y A+N G+ + L V APP F+QR S T GS R+ V G P
Sbjct: 73 ANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPT 132
Query: 259 PQMTWFHDGNSLDS--DDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR 316
P + ++ DG + S D ++ E D + L++ D+G Y+ A NS G A S A +
Sbjct: 133 PVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELL 192
Query: 317 ING 319
+ G
Sbjct: 193 VQG 195
Score = 65.9 bits (159), Expect = 1e-10, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 5/132 (3%)
Query: 9 ELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV---NAPPIFIQRPVSTTYSTGSTSRI 65
+L I V + + GRYS A N +G + V APP F+QR S T GS R+
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRL 123
Query: 66 TCLVEGHPLPQMTWFHDGNSLDS--DDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG 123
V G P P + ++ DG + S D ++ E D + L++ D+G Y+ A NS G
Sbjct: 124 QVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVG 183
Query: 124 SAESVAMIRING 135
A S A + + G
Sbjct: 184 RATSTAELLVQG 195
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 93/203 (45%), Gaps = 25/203 (12%)
Query: 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG------ 98
PP ++ P S G + + C EG P P + W+ G +++D H
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 99 --FVLVLNGVRES-DAGVYNCVAQNSEGSAES------VAMIRINGHRAPRLVVKPFDMR 149
F+ +++G + D GVY CVA+N G A S VA++R + + P D+
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQ------NPSDVM 122
Query: 150 APAGSSVEIPCKP-DGEPLPRISWSKDEAEFVEDRNHKIH-RTGSLRLYNIGPQDSGLYR 207
G + C+P G P P ISW KD + +D++ +I R G L + D+G Y
Sbjct: 123 VAVGEPAVMECQPPRGHPEPTISWKKDGSPL-DDKDERITIRGGKLMITYTRKSDAGKYV 181
Query: 208 CTASNLLGEDVAE-GYLTVTGAP 229
C +N++GE +E LTV P
Sbjct: 182 CVGTNMVGERESEVAELTVLERP 204
Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 94/207 (45%), Gaps = 25/207 (12%)
Query: 221 GYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH 280
G L PP ++ P S G + + C EG P P + W+ G +++D H
Sbjct: 1 GSLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSH 60
Query: 281 DG--------FVLVLNGVRES-DAGVYNCVAQNSEGSAES------VAMIRINGHRAPRL 325
F+ +++G + D GVY CVA+N G A S VA++R + +
Sbjct: 61 RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQ---- 116
Query: 326 VVKPFDMRAPAGSSVEIPCKP-DGEPLPRISWSKDEAEFVEDRNHKIH-RTGSLRLYNIG 383
P D+ G + C+P G P P ISW KD + +D++ +I R G L +
Sbjct: 117 --NPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPL-DDKDERITIRGGKLMITYTR 173
Query: 384 PQDSGLYRCTASNLLGEDVAE-GYLTV 409
D+G Y C +N++GE +E LTV
Sbjct: 174 KSDAGKYVCVGTNMVGERESEVAELTV 200
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 83/192 (43%), Gaps = 14/192 (7%)
Query: 135 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEF--VEDRNHKIHRTGS 192
G P ++ KP + G C G+P P I W K+ + + R + + G
Sbjct: 3 GAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG 62
Query: 193 LRLYNIGP----QDSGLYRCTASNLLGEDV-AEGYLTVT------GAPPIFIQRPVSTTY 241
+ + I P +D Y C A N +G+ V A+ LT+ P+ Q P +
Sbjct: 63 ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVI 122
Query: 242 STGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCV 301
G T +TC G+P P + W + +D + DGF+ + N RE D G Y CV
Sbjct: 123 EVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENS-REEDQGKYECV 181
Query: 302 AQNSEGSAESVA 313
A+NS G+ S A
Sbjct: 182 AENSMGTEHSKA 193
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 78/188 (41%), Gaps = 12/188 (6%)
Query: 226 TGA-PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD--HVTYEHDG 282
TGA PP I++P + G + C G P P + W +G + + E G
Sbjct: 2 TGAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPG 61
Query: 283 FVLVL--NGVRES-DAGVYNCVAQNSEGSAESV-AMIRI-NGHRAPR----LVVKPFDMR 333
+ +L VR D Y CVA+N G A S A + I G + P + P
Sbjct: 62 GISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRV 121
Query: 334 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCT 393
G +V + CK G P P I W K++ + + G L++ N +D G Y C
Sbjct: 122 IEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECV 181
Query: 394 ASNLLGED 401
A N +G +
Sbjct: 182 AENSMGTE 189
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 75/184 (40%), Gaps = 11/184 (5%)
Query: 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD--HVTYEHDGFVLV 102
PP I++P + G + C G P P + W +G + + E G + +
Sbjct: 6 PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISI 65
Query: 103 L--NGVRES-DAGVYNCVAQNSEGSAESV-AMIRI-NGHRAPR----LVVKPFDMRAPAG 153
L VR D Y CVA+N G A S A + I G + P + P G
Sbjct: 66 LRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVG 125
Query: 154 SSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNL 213
+V + CK G P P I W K++ + + G L++ N +D G Y C A N
Sbjct: 126 HTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENS 185
Query: 214 LGED 217
+G +
Sbjct: 186 MGTE 189
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 52/117 (44%), Gaps = 13/117 (11%)
Query: 23 YSCVAGNPAG----------VYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGH 72
Y CVA N G +Y GD T P+ Q P + G T +TC G+
Sbjct: 80 YECVAENGVGDAVSADATLTIYEGDK--TPAGFPVITQGPGTRVIEVGHTVLMTCKAIGN 137
Query: 73 PLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVA 129
P P + W + +D + DGF+ + N RE D G Y CVA+NS G+ S A
Sbjct: 138 PTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENS-REEDQGKYECVAENSMGTEHSKA 193
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 82/188 (43%), Gaps = 14/188 (7%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEF--VEDRNHKIHRTGSLRLY 196
P ++ KP + G C G+P P I W K+ + + R + + G + +
Sbjct: 9 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISIL 68
Query: 197 NIGP----QDSGLYRCTASNLLGEDV-AEGYLTV------TGAPPIFIQRPVSTTYSTGS 245
I P +D Y C A N +G+ V A+ LT+ P+ Q P + G
Sbjct: 69 RIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGH 128
Query: 246 TSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNS 305
T +TC G+P P + W + +D + DGF+ + N RE D G Y CVA+NS
Sbjct: 129 TVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENS-REEDQGKYECVAENS 187
Query: 306 EGSAESVA 313
G+ S A
Sbjct: 188 MGTEHSKA 195
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 83/202 (41%), Gaps = 14/202 (6%)
Query: 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD--HVTYEHDGFVLV 102
PP I++P + G + C G P P + W +G + + E G + +
Sbjct: 8 PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISI 67
Query: 103 L--NGVRES-DAGVYNCVAQNSEGSAESV-AMIRI-NGHRAPR----LVVKPFDMRAPAG 153
L VR D Y CVA+N G A S A + I G + P + P G
Sbjct: 68 LRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVG 127
Query: 154 SSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNL 213
+V + CK G P P I W K++ + + G L++ N +D G Y C A N
Sbjct: 128 HTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENS 187
Query: 214 LGEDVAEG---YLTVTGAPPIF 232
+G + ++ Y+ V PP F
Sbjct: 188 MGTEHSKATNLYVKVRRVPPTF 209
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 75/184 (40%), Gaps = 11/184 (5%)
Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD--HVTYEHDGFVLV 286
PP I++P + G + C G P P + W +G + + E G + +
Sbjct: 8 PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISI 67
Query: 287 L--NGVRES-DAGVYNCVAQNSEGSAESV-AMIRI-NGHRAPR----LVVKPFDMRAPAG 337
L VR D Y CVA+N G A S A + I G + P + P G
Sbjct: 68 LRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVG 127
Query: 338 SSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNL 397
+V + CK G P P I W K++ + + G L++ N +D G Y C A N
Sbjct: 128 HTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENS 187
Query: 398 LGED 401
+G +
Sbjct: 188 MGTE 191
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 83/188 (44%), Gaps = 17/188 (9%)
Query: 135 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS-- 192
G PR + +P D +G C+ G+P PR++W+K + R I S
Sbjct: 3 GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62
Query: 193 --LRLYNI-GPQDSGLYRCTASNLLGEDVAEGYLTV-------TGAPPIFIQRPVSTTYS 242
LR+ + P+D +Y C A N +GE LTV +G P I + +
Sbjct: 63 AVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVER 122
Query: 243 TGSTSRITCLVEGHPLPQMTWFHDGNSLD---SDDHVTYEHDGFVLVLNGVRESDAGVYN 299
T T+ + C G+P P++TWF D +D S+ + G L + E+D G Y
Sbjct: 123 T-RTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSG-ALQIESSEETDQGKYE 180
Query: 300 CVAQNSEG 307
CVA NS G
Sbjct: 181 CVATNSAG 188
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 80/190 (42%), Gaps = 18/190 (9%)
Query: 41 TVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD--- 97
T PP FI+ P +G + C G P P++TW G ++S T E D
Sbjct: 2 TGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESA 61
Query: 98 GFVLVLNGVRE-SDAGVYNCVAQNSEGSAESVAMIRINGHRA-----PRLVVKPFDMRAP 151
G VL + +R D VY CVAQNS G A + + P + + P
Sbjct: 62 GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVE 121
Query: 152 AGSSVEIPCKPDGEPLPRISWSKDEAEFV----EDRNHKIH--RTGSLRLYNIGPQDSGL 205
+ + C G P P I+W KD F+ N +I R+G+L++ + D G
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKD---FLPVDPSASNGRIKQLRSGALQIESSEETDQGK 178
Query: 206 YRCTASNLLG 215
Y C A+N G
Sbjct: 179 YECVATNSAG 188
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 79/186 (42%), Gaps = 18/186 (9%)
Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD---GFVL 285
PP FI+ P +G + C G P P++TW G ++S T E D G VL
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVL 65
Query: 286 VLNGVRE-SDAGVYNCVAQNSEGSAESVAMIRINGHRA-----PRLVVKPFDMRAPAGSS 339
+ +R D VY CVAQNS G A + + P + + P +
Sbjct: 66 RIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRT 125
Query: 340 VEIPCKPDGEPLPRISWSKDEAEFV----EDRNHKIH--RTGSLRLYNIGPQDSGLYRCT 393
+ C G P P I+W KD F+ N +I R+G+L++ + D G Y C
Sbjct: 126 ATMLCAASGNPDPEITWFKD---FLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECV 182
Query: 394 ASNLLG 399
A+N G
Sbjct: 183 ATNSAG 188
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 319 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS-- 376
G PR + +P D +G C+ G+P PR++W+K + R I S
Sbjct: 3 GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62
Query: 377 --LRLYNI-GPQDSGLYRCTASNLLGEDVAEGYLTVTGENSV 415
LR+ + P+D +Y C A N +GE LTV E+ +
Sbjct: 63 AVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQL 104
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 83/188 (44%), Gaps = 17/188 (9%)
Query: 135 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS-- 192
G PR + +P D +G C+ G+P PR++W+K + R I S
Sbjct: 3 GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62
Query: 193 --LRLYNI-GPQDSGLYRCTASNLLGEDVAEGYLTV-------TGAPPIFIQRPVSTTYS 242
LR+ + P+D +Y C A N +GE LTV +G P I + +
Sbjct: 63 AVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVER 122
Query: 243 TGSTSRITCLVEGHPLPQMTWFHDGNSLD---SDDHVTYEHDGFVLVLNGVRESDAGVYN 299
T T+ + C G+P P++TWF D +D S+ + G L + E+D G Y
Sbjct: 123 T-RTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSG-ALQIESSEETDQGKYE 180
Query: 300 CVAQNSEG 307
CVA NS G
Sbjct: 181 CVATNSAG 188
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 80/190 (42%), Gaps = 18/190 (9%)
Query: 41 TVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD--- 97
T PP FI+ P +G + C G P P++TW G ++S T E D
Sbjct: 2 TGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESA 61
Query: 98 GFVLVLNGVRE-SDAGVYNCVAQNSEGSAESVAMIRINGHRA-----PRLVVKPFDMRAP 151
G VL + +R D VY CVAQNS G A + + P + + P
Sbjct: 62 GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVE 121
Query: 152 AGSSVEIPCKPDGEPLPRISWSKDEAEFV----EDRNHKIH--RTGSLRLYNIGPQDSGL 205
+ + C G P P I+W KD F+ N +I R+G+L++ + D G
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKD---FLPVDPSASNGRIKQLRSGALQIESSEETDQGK 178
Query: 206 YRCTASNLLG 215
Y C A+N G
Sbjct: 179 YECVATNSAG 188
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 79/186 (42%), Gaps = 18/186 (9%)
Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD---GFVL 285
PP FI+ P +G + C G P P++TW G ++S T E D G VL
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVL 65
Query: 286 VLNGVRE-SDAGVYNCVAQNSEGSAESVAMIRINGHRA-----PRLVVKPFDMRAPAGSS 339
+ +R D VY CVAQNS G A + + P + + P +
Sbjct: 66 RIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRT 125
Query: 340 VEIPCKPDGEPLPRISWSKDEAEFV----EDRNHKIH--RTGSLRLYNIGPQDSGLYRCT 393
+ C G P P I+W KD F+ N +I R+G+L++ + D G Y C
Sbjct: 126 ATMLCAASGNPDPEITWFKD---FLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECV 182
Query: 394 ASNLLG 399
A+N G
Sbjct: 183 ATNSAG 188
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 319 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS-- 376
G PR + +P D +G C+ G+P PR++W+K + R I S
Sbjct: 3 GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62
Query: 377 --LRLYNI-GPQDSGLYRCTASNLLGEDVAEGYLTVTGENSV 415
LR+ + P+D +Y C A N +GE LTV E+ +
Sbjct: 63 AVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQL 104
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 81/185 (43%), Gaps = 17/185 (9%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH-RTGSLRLYN 197
P V P D +G C+ GEP PRI+W K + R I G+ +
Sbjct: 8 PVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLR 67
Query: 198 IGP----QDSGLYRCTASNLLGEDVAEGYLTV-------TGAPPIFIQRPVSTTYSTGST 246
I P +D +Y CTA+N LGE L+V +G P I + P G T
Sbjct: 68 IQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMG-PQLKVVEKGRT 126
Query: 247 SRITCLVEGHPLPQMTWFHDGNSLD---SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 303
+ + C G+P P+++WF D +D S+ + G L + ESD G Y CVA
Sbjct: 127 ATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSG-ALQIESSEESDQGKYECVAT 185
Query: 304 NSEGS 308
NS G+
Sbjct: 186 NSAGT 190
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 78/185 (42%), Gaps = 12/185 (6%)
Query: 43 NAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD---GF 99
++ P+F++ P T +G + C G P P++TW G + S E D G
Sbjct: 5 DSKPVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGS 64
Query: 100 VLVLNGVR-ESDAGVYNCVAQNSEGSAESVAMIRINGHRA-----PRLVVKPFDMRAPAG 153
VL + +R + D +Y C A NS G + A + + P + + P G
Sbjct: 65 VLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKG 124
Query: 154 SSVEIPCKPDGEPLPRISWSKDEAEF---VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTA 210
+ + C G P P ISW KD + K R+G+L++ + D G Y C A
Sbjct: 125 RTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKYECVA 184
Query: 211 SNLLG 215
+N G
Sbjct: 185 TNSAG 189
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 76/182 (41%), Gaps = 12/182 (6%)
Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD---GFVLV 286
P+F++ P T +G + C G P P++TW G + S E D G VL
Sbjct: 8 PVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLR 67
Query: 287 LNGVR-ESDAGVYNCVAQNSEGSAESVAMIRINGHRA-----PRLVVKPFDMRAPAGSSV 340
+ +R + D +Y C A NS G + A + + P + + P G +
Sbjct: 68 IQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRTA 127
Query: 341 EIPCKPDGEPLPRISWSKDEAEF---VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNL 397
+ C G P P ISW KD + K R+G+L++ + D G Y C A+N
Sbjct: 128 TMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKYECVATNS 187
Query: 398 LG 399
G
Sbjct: 188 AG 189
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 12/120 (10%)
Query: 15 VQREHGGRYSCVAGNPAGVYRGDLHVTV-------NAPPIFIQRPVSTTYSTGSTSRITC 67
VQR+ Y C A N G ++V + P P G T+ + C
Sbjct: 73 VQRDEA-IYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRTATMLC 131
Query: 68 LVEGHPLPQMTWFHDGNSLD---SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 124
G+P P+++WF D +D S+ + G L + ESD G Y CVA NS G+
Sbjct: 132 AAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSG-ALQIESSEESDQGKYECVATNSAGT 190
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH-RTGSLRLYN 381
P V P D +G C+ GEP PRI+W K + R I G+ +
Sbjct: 8 PVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLR 67
Query: 382 IGP----QDSGLYRCTASNLLGEDVAEGYLTVTGENSV 415
I P +D +Y CTA+N LGE L+V E+ +
Sbjct: 68 IQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQL 105
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 115/292 (39%), Gaps = 23/292 (7%)
Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPR-ISWSKDEAEFVEDRNHKIH------R 189
R ++ + P G S C+ G+ + ISW E + +I
Sbjct: 1 RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 190 TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGA---PPIFIQRPVSTTYSTGST 246
+ +L +YN D+G+Y+C + ED + TV +F P + G
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVT---AEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGED 117
Query: 247 SRITCLVEGHPLPQMTWFHDGNS--LDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN 304
+ I C V P + W H G L D + + L + G++++D G Y C +
Sbjct: 118 AVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY-LQIRGIKKTDEGTYRCEGRI 176
Query: 305 SEGSAESVAMIRINGHRAPRLVVKPFDMRAPA--GSSVEIPCKPDGEPLPRISWSKD--- 359
+ I++ + P + + + A A G SV + C DG P P +SW+KD
Sbjct: 177 LARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEP 236
Query: 360 -EAEFVEDRNHKIHRTGS-LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
E E +D H S L + N+ D Y C A N GE A +L V
Sbjct: 237 IENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 107/281 (38%), Gaps = 16/281 (5%)
Query: 52 PVSTTYSTGSTSRITCLVEGHPLPQ-MTWFH-DGNSLDSDDH----VTYEHDGFVLVLNG 105
P S G + C V G + ++WF +G L + V + D L +
Sbjct: 9 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYN 68
Query: 106 VRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGE 165
DAG+Y CV +G+ +S A + + + P G I C
Sbjct: 69 ANIDDAGIYKCVVTAEDGT-QSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSS 127
Query: 166 PLPRISWSKDEAEFV--EDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLL-GEDVAEGY 222
P I W + + +D + L++ I D G YRC L GE +
Sbjct: 128 LPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDI 187
Query: 223 LTVTGAPPIFIQRP--VSTTYSTGSTSRITCLVEGHPLPQMTWFHDG----NSLDSDDHV 276
+ PP R V+ T + G + + C +G P P M+W DG N + D+
Sbjct: 188 QVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKH 247
Query: 277 TYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
+ D L + V ++D Y C+A+N G ++ +++
Sbjct: 248 IFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 91/229 (39%), Gaps = 11/229 (4%)
Query: 7 STELVISGVQREHGGRYSCVAGNPAGVY-RGDLHVTVNAPPIFIQRPVSTTYSTGSTSRI 65
S+ L I + G Y CV G ++V + +F P + G + I
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVI 120
Query: 66 TCLVEGHPLPQMTWFHDGNS--LDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG 123
C V P + W H G L D + + L + G++++D G Y C +
Sbjct: 121 VCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY-LQIRGIKKTDEGTYRCEGRILAR 179
Query: 124 SAESVAMIRINGHRAPRLVVKPFDMRAPA--GSSVEIPCKPDGEPLPRISWSKD----EA 177
+ I++ + P + + + A A G SV + C DG P P +SW+KD E
Sbjct: 180 GEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIEN 239
Query: 178 EFVEDRNHKIHRTGS-LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
E +D H S L + N+ D Y C A N GE A +L V
Sbjct: 240 EEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 8/136 (5%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPA--GVYRGDLHVTVNAPPIFIQRP--VSTTYSTGS 61
S+ L I G+++ G Y C A + D+ V VN PP R V+ T + G
Sbjct: 153 SNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQ 212
Query: 62 TSRITCLVEGHPLPQMTWFHDG----NSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCV 117
+ + C +G P P M+W DG N + D+ + D L + V ++D Y C+
Sbjct: 213 SVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCI 272
Query: 118 AQNSEGSAESVAMIRI 133
A+N G ++ +++
Sbjct: 273 AENKAGEQDASIHLKV 288
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 76.3 bits (186), Expect = 7e-14, Method: Composition-based stats.
Identities = 52/193 (26%), Positives = 86/193 (44%), Gaps = 8/193 (4%)
Query: 225 VTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD----HVTYEH 280
+T P F Q S GST+ + G P+P+++WF DG + + +++
Sbjct: 1 MTTQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSD 60
Query: 281 DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRA-PRLVVKPFDMRAPAGSS 339
L + V ++++G Y+ A N G A S A + + A P V + M GS
Sbjct: 61 GRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQ 120
Query: 340 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASN 396
V + + G P P + + +D AE + +I + G SL + P+DSG Y A+N
Sbjct: 121 VRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATN 180
Query: 397 LLGEDVAEGYLTV 409
+G + L V
Sbjct: 181 SVGRATSTAELLV 193
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 8/188 (4%)
Query: 46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD----HVTYEHDGFVL 101
P F Q S GST+ + G P+P+++WF DG + + +++ L
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKL 65
Query: 102 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRA-PRLVVKPFDMRAPAGSSVEIPC 160
+ V ++++G Y+ A N G A S A + + A P V + M GS V +
Sbjct: 66 TIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQV 125
Query: 161 KPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGED 217
+ G P P + + +D AE + +I + G SL + P+DSG Y A+N +G
Sbjct: 126 RVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRA 185
Query: 218 VAEGYLTV 225
+ L V
Sbjct: 186 TSTAELLV 193
Score = 65.9 bits (159), Expect = 1e-10, Method: Composition-based stats.
Identities = 51/177 (28%), Positives = 76/177 (42%), Gaps = 23/177 (12%)
Query: 153 GSSVEIPCKPDGEPLPRISWSKD------------EAEFVEDRNHKIHRTGSLRLYNIGP 200
GS+ G P+P +SW +D + F + R L + +
Sbjct: 20 GSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGR-------AKLTIPAVTK 72
Query: 201 QDSGLYRCTASNLLGEDVAEGYLTVTG--APPIFIQRPVSTTYSTGSTSRITCLVEGHPL 258
+SG Y A+N G+ + L V APP F+QR S T GS R+ V G P
Sbjct: 73 ANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPT 132
Query: 259 PQMTWFHDGNSLDS--DDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVA 313
P + ++ DG + S D ++ E D + L++ D+G Y+ A NS G A S A
Sbjct: 133 PVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTA 189
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 9 ELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV---NAPPIFIQRPVSTTYSTGSTSRI 65
+L I V + + GRYS A N +G + V APP F+QR S T GS R+
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRL 123
Query: 66 TCLVEGHPLPQMTWFHDGNSLDS--DDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG 123
V G P P + ++ DG + S D ++ E D + L++ D+G Y+ A NS G
Sbjct: 124 QVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVG 183
Query: 124 SAESVA 129
A S A
Sbjct: 184 RATSTA 189
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 79/189 (41%), Gaps = 15/189 (7%)
Query: 134 NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH-RTGS 192
G P + P D +G C+ GEP PRI+W K + R I G+
Sbjct: 2 TGDSKPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGA 61
Query: 193 LRLYNIGP----QDSGLYRCTASNLLGEDVAEGYLTV---TGAPPIFIQ---RPVSTTYS 242
+ I P +D +Y CTA+N LGE L+V PP F P
Sbjct: 62 GSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVE 121
Query: 243 TGSTSRITCLVEGHPLPQMTWFHDGNSLD---SDDHVTYEHDGFVLVLNGVRESDAGVYN 299
T+ + C G+P P+++WF D +D S+ + G L + ESD G Y
Sbjct: 122 KARTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSG-ALQIESSEESDQGKYE 180
Query: 300 CVAQNSEGS 308
CVA NS G+
Sbjct: 181 CVATNSAGT 189
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 81/190 (42%), Gaps = 18/190 (9%)
Query: 41 TVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD--- 97
T ++ P+FI+ P T +G + C G P P++TW G + S E D
Sbjct: 2 TGDSKPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGA 61
Query: 98 GFVLVLNGVR-ESDAGVYNCVAQNSEGSAESVAMIRINGHRA-----PRLVVKPFDMRAP 151
G VL + +R + D +Y C A NS G + A + + P + + P
Sbjct: 62 GSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVE 121
Query: 152 AGSSVEIPCKPDGEPLPRISWSKDEAEFV----EDRNHKIH--RTGSLRLYNIGPQDSGL 205
+ + C G P P ISW KD F+ N +I R+G+L++ + D G
Sbjct: 122 KARTATMLCAAGGNPDPEISWFKD---FLPVDPATSNGRIKQLRSGALQIESSEESDQGK 178
Query: 206 YRCTASNLLG 215
Y C A+N G
Sbjct: 179 YECVATNSAG 188
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 78/185 (42%), Gaps = 18/185 (9%)
Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD---GFVLV 286
P+FI+ P T +G + C G P P++TW G + S E D G VL
Sbjct: 7 PVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLR 66
Query: 287 LNGVR-ESDAGVYNCVAQNSEGSAESVAMIRINGHRA-----PRLVVKPFDMRAPAGSSV 340
+ +R + D +Y C A NS G + A + + P + + P +
Sbjct: 67 IQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTA 126
Query: 341 EIPCKPDGEPLPRISWSKDEAEFV----EDRNHKIH--RTGSLRLYNIGPQDSGLYRCTA 394
+ C G P P ISW KD F+ N +I R+G+L++ + D G Y C A
Sbjct: 127 TMLCAAGGNPDPEISWFKD---FLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVA 183
Query: 395 SNLLG 399
+N G
Sbjct: 184 TNSAG 188
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 44/105 (41%), Gaps = 5/105 (4%)
Query: 318 NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH-RTGS 376
G P + P D +G C+ GEP PRI+W K + R I G+
Sbjct: 2 TGDSKPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGA 61
Query: 377 LRLYNIGP----QDSGLYRCTASNLLGEDVAEGYLTVTGENSVEP 417
+ I P +D +Y CTA+N LGE L+V E + P
Sbjct: 62 GSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPP 106
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 50/120 (41%), Gaps = 12/120 (10%)
Query: 15 VQREHGGRYSCVAGNPAGVYRGDLHVTV----NAPPIFIQ---RPVSTTYSTGSTSRITC 67
VQR+ Y C A N G ++V PP F P T+ + C
Sbjct: 72 VQRDEA-IYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLC 130
Query: 68 LVEGHPLPQMTWFHDGNSLD---SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 124
G+P P+++WF D +D S+ + G L + ESD G Y CVA NS G+
Sbjct: 131 AAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSG-ALQIESSEESDQGKYECVATNSAGT 189
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 85/192 (44%), Gaps = 20/192 (10%)
Query: 135 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH---RTG 191
G PR P D +G C+ G+P P+I W+K + R I +G
Sbjct: 3 GETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSG 62
Query: 192 S-LRLYNI-GPQDSGLYRCTASNLLGEDVAEGYLTVT-------GAPPIFIQRPVSTTYS 242
S LR+ + P+D +Y C ASN +GE LTV G P I + +
Sbjct: 63 SVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVER 122
Query: 243 TGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH------VTYEHDGFVLVLNGVRESDAG 296
T T+ + C G+P P++TWF D +D+ ++ + E G L + ESD G
Sbjct: 123 T-RTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIG-ALQIEQSEESDQG 180
Query: 297 VYNCVAQNSEGS 308
Y CVA NS G+
Sbjct: 181 KYECVATNSAGT 192
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 78/192 (40%), Gaps = 19/192 (9%)
Query: 41 TVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD--- 97
T PP F + PV T +G + C G P P++ W G + + E D
Sbjct: 2 TGETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGS 61
Query: 98 GFVLVLNGVRE-SDAGVYNCVAQNSEGS-AESVAMIRINGHRAPRLVVKPFDMRAPAGSS 155
G VL + +R D +Y CVA N+ G + S + + + PR DM P
Sbjct: 62 GSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPR-GFPTIDM-GPQLKV 119
Query: 156 VE------IPCKPDGEPLPRISWSKDEAEF-VEDRNHKIHR-----TGSLRLYNIGPQDS 203
VE + C G P P I+W KD + N +I + G+L++ D
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQ 179
Query: 204 GLYRCTASNLLG 215
G Y C A+N G
Sbjct: 180 GKYECVATNSAG 191
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 77/188 (40%), Gaps = 19/188 (10%)
Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD---GFVL 285
PP F + PV T +G + C G P P++ W G + + E D G VL
Sbjct: 6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVL 65
Query: 286 VLNGVRE-SDAGVYNCVAQNSEGS-AESVAMIRINGHRAPRLVVKPFDMRAPAGSSVE-- 341
+ +R D +Y CVA N+ G + S + + + PR DM P VE
Sbjct: 66 RIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPR-GFPTIDM-GPQLKVVERT 123
Query: 342 ----IPCKPDGEPLPRISWSKDEAEF-VEDRNHKIHR-----TGSLRLYNIGPQDSGLYR 391
+ C G P P I+W KD + N +I + G+L++ D G Y
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYE 183
Query: 392 CTASNLLG 399
C A+N G
Sbjct: 184 CVATNSAG 191
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 319 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH---RTG 375
G PR P D +G C+ G+P P+I W+K + R I +G
Sbjct: 3 GETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSG 62
Query: 376 S-LRLYNI-GPQDSGLYRCTASNLLGEDVAEGYLTVTGENSV 415
S LR+ + P+D +Y C ASN +GE LTV E+ +
Sbjct: 63 SVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQI 104
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 47/115 (40%), Gaps = 14/115 (12%)
Query: 23 YSCVAGNPAGVYRGDLHVTV-------NAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLP 75
Y CVA N G +TV P P T+ + C G+P P
Sbjct: 79 YECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDP 138
Query: 76 QMTWFHDGNSLDSDDH------VTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 124
++TWF D +D+ ++ + E G L + ESD G Y CVA NS G+
Sbjct: 139 EITWFKDFLPVDTSNNNGRIKQLRSESIG-ALQIEQSEESDQGKYECVATNSAGT 192
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 82/190 (43%), Gaps = 18/190 (9%)
Query: 41 TVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD--- 97
T +PP+FI++PV +G + C G P P++TW G ++S T E D
Sbjct: 2 TGESPPVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESA 61
Query: 98 GFVLVLNGVRE-SDAGVYNCVAQNSEGSAESVAMIRINGHRA-----PRLVVKPFDMRAP 151
G VL + +R D +Y CVAQN G A + + P + + P
Sbjct: 62 GAVLRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLKVVE 121
Query: 152 AGSSVEIPCKPDGEPLPRISWSKDEAEFV----EDRNHKIH--RTGSLRLYNIGPQDSGL 205
+ + C G P P I+W KD F+ N +I R+G L++ + D G
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKD---FLPVDPSTSNGRIKQLRSGGLQIESSEETDQGK 178
Query: 206 YRCTASNLLG 215
Y C ASN G
Sbjct: 179 YECVASNSAG 188
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 81/187 (43%), Gaps = 18/187 (9%)
Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD---GFV 284
+PP+FI++PV +G + C G P P++TW G ++S T E D G V
Sbjct: 5 SPPVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 285 LVLNGVRE-SDAGVYNCVAQNSEGSAESVAMIRINGHRA-----PRLVVKPFDMRAPAGS 338
L + +R D +Y CVAQN G A + + P + + P
Sbjct: 65 LRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLKVVERTR 124
Query: 339 SVEIPCKPDGEPLPRISWSKDEAEFV----EDRNHKIH--RTGSLRLYNIGPQDSGLYRC 392
+ + C G P P I+W KD F+ N +I R+G L++ + D G Y C
Sbjct: 125 TATMLCAASGNPDPEITWFKD---FLPVDPSTSNGRIKQLRSGGLQIESSEETDQGKYEC 181
Query: 393 TASNLLG 399
ASN G
Sbjct: 182 VASNSAG 188
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 78/187 (41%), Gaps = 15/187 (8%)
Query: 135 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS-- 192
G P + KP D +G C+ G+P PR++W+K + R I S
Sbjct: 3 GESPPVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62
Query: 193 --LRLYNI-GPQDSGLYRCTASNLLGEDVAEGYLTVT---GAPPIFIQ---RPVSTTYST 243
LR+ + P+D +Y C A N GE LTV PP F P
Sbjct: 63 AVLRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLKVVER 122
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLD---SDDHVTYEHDGFVLVLNGVRESDAGVYNC 300
T+ + C G+P P++TWF D +D S+ + G L + E+D G Y C
Sbjct: 123 TRTATMLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQLRSGG-LQIESSEETDQGKYEC 181
Query: 301 VAQNSEG 307
VA NS G
Sbjct: 182 VASNSAG 188
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Query: 319 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS-- 376
G P + KP D +G C+ G+P PR++W+K + R I S
Sbjct: 3 GESPPVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62
Query: 377 --LRLYNI-GPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPA 418
LR+ + P+D +Y C A N GE LTV E+ + P
Sbjct: 63 AVLRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQLPPG 107
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 98/403 (24%), Positives = 167/403 (41%), Gaps = 81/403 (20%)
Query: 46 PIFIQRPVSTT-YSTGSTSRITCLVEGHPLPQMTWFH-DGNSL-DSDDHVTYEHDGFVLV 102
P+F++ P + +S + + I C G+P+P++ W DG ++ D DG LV
Sbjct: 4 PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDG-KLV 62
Query: 103 LNGVRESD------AGVYNCVAQNSEGSAESVAMIRINGH-RAPRLVVKPFDMRAPA--- 152
R D A VY C+A+N GS +I + H RA +V++ ++ A
Sbjct: 63 FPPFRAEDYRQEVHAQVYACLARNQFGS-----IISRDVHVRA--VVIQSYESEADNEYV 115
Query: 153 --GSSVEIPCKP--------------DGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLY 196
G+SV + C+ D E R + + AE D + + +G L +
Sbjct: 116 IRGNSVVMKCEIPSYVADFVFVDLWLDSE--GRNYYPNNAAE--TDGKYLVLPSGELHIR 171
Query: 197 NIGPQDS-GLYRC-TASNLLGE---DVAEGYLTVTGA-----PPI-------FIQRPVST 239
+GP+D Y+C T L GE +G L +T P + FI +++
Sbjct: 172 EVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPVGSVRPKVNPQDKHQFIDVELAS 231
Query: 240 TYSTGSTSRITCLVEGHPLPQMTW--FHDGNSLDS----DDHVTYEHDGFVLVLNGVRES 293
+YS + C+ + +P P W F +G + +D V + G +++ + V E
Sbjct: 232 SYS------LLCMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVK-QVSGTLIIKDAVVE- 283
Query: 294 DAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPR 353
D+G Y CV NS G ++ + + + + P G C+ G P+
Sbjct: 284 DSGKYLCVVNNSVGGESVETVLTVTAPLSAK--IDPPTQTVDFGRPAVFTCQYTGNPIKT 341
Query: 354 ISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 396
+SW KD H LR+ ++ +D G+Y+C N
Sbjct: 342 VSWMKDGKAIG-------HSESVLRIESVKKEDKGMYQCFVRN 377
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 18/172 (10%)
Query: 153 GSSVEIPCKPDGEPLPRISWSK-------DEAEFVEDRNHKIHRTGSLRLYNIGPQDSGL 205
SS + C P P W K +A + DR ++ +G+L + + +DSG
Sbjct: 230 ASSYSLLCMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQV--SGTLIIKDAVVEDSGK 287
Query: 206 YRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFH 265
Y C +N +G + E LTVT AP P + T G + TC G+P+ ++W
Sbjct: 288 YLCVVNNSVGGESVETVLTVT-APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMK 346
Query: 266 DGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
DG ++ H VL + V++ D G+Y C +N SAE+ A +++
Sbjct: 347 DGKAIG--------HSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 390
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 8/130 (6%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTS 63
++ S L+I E G+Y CV N G + +TV AP P + T G +
Sbjct: 269 KQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPA 328
Query: 64 RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG 123
TC G+P+ ++W DG ++ H VL + V++ D G+Y C +N
Sbjct: 329 VFTCQYTGNPIKTVSWMKDGKAIG--------HSESVLRIESVKKEDKGMYQCFVRNDRE 380
Query: 124 SAESVAMIRI 133
SAE+ A +++
Sbjct: 381 SAEASAELKL 390
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 81/368 (22%), Positives = 127/368 (34%), Gaps = 42/368 (11%)
Query: 154 SSVEIPCKPDGEPLPRISWSKDEAEFVEDRN--HKIHRTGSLRLYNIGPQD------SGL 205
+ EI CK G P+P I W + + V D +I G L +D + +
Sbjct: 20 TGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQV 79
Query: 206 YRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFH 265
Y C A N G ++ + + G++ + C + P +
Sbjct: 80 YACLARNQFGSIISRDVHVRAVVIQSYESEADNEYVIRGNSVVMKCEI---PSYVADFVF 136
Query: 266 DGNSLDSDDHVTY-----EHDGFVLVLNG----VRE----SDAGVYNCVAQN-----SEG 307
LDS+ Y E DG LVL +RE Y C ++ +
Sbjct: 137 VDLWLDSEGRNYYPNNAAETDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRL 196
Query: 308 SAESVAMIRINGHRAPRLVVKPFD----MRAPAGSSVEIPCKPDGEPLPRISWSK----- 358
SA ++ + R V P D + SS + C P P W K
Sbjct: 197 SATKGRLVITEPVGSVRPKVNPQDKHQFIDVELASSYSLLCMAQSYPTPSFRWYKFIEGT 256
Query: 359 --DEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVE 416
+A + DR ++ +G+L + + +DSG Y C +N +G + E LTVT S +
Sbjct: 257 TRKQAVVLNDRVKQV--SGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAK 314
Query: 417 PAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVNATINSLFGYHSNEQQDHGSLMKL 476
P T +K S D S+ S +++D G
Sbjct: 315 IDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCF 374
Query: 477 LRFPDESA 484
+R ESA
Sbjct: 375 VRNDRESA 382
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 84/198 (42%), Gaps = 17/198 (8%)
Query: 46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTW--------FHDGN-SLDSDDHVTYEH 96
P IQ TTY G + + C EG P+P++TW F +G+ SLD V +H
Sbjct: 2 PHIIQLKNETTYENGQVT-LVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 97 DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSV 156
L + V+ SD+G Y+C A + G + + I AP+ + + G+ +
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI--EYAPKFISNQTIYYSWEGNPI 118
Query: 157 EIPCKPDGEPLPRISWSKDEAEF--VEDRNHKIHRTGSLRLYNIGP---QDSGLYRCTAS 211
I C P I W +D+ N K + TG + I P D G Y CTA+
Sbjct: 119 NISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTAT 178
Query: 212 NLLGEDVAEGYLTVTGAP 229
N +G E L + P
Sbjct: 179 NHIGTRFQEYILALADVP 196
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 83/194 (42%), Gaps = 17/194 (8%)
Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTW--------FHDGN-SLDSDDHVTYEH 280
P IQ TTY G + + C EG P+P++TW F +G+ SLD V +H
Sbjct: 2 PHIIQLKNETTYENGQVT-LVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 281 DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSV 340
L + V+ SD+G Y+C A + G + + I AP+ + + G+ +
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI--EYAPKFISNQTIYYSWEGNPI 118
Query: 341 EIPCKPDGEPLPRISWSKDEAEF--VEDRNHKIHRTGSLRLYNIGP---QDSGLYRCTAS 395
I C P I W +D+ N K + TG + I P D G Y CTA+
Sbjct: 119 NISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTAT 178
Query: 396 NLLGEDVAEGYLTV 409
N +G E L +
Sbjct: 179 NHIGTRFQEYILAL 192
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 15/167 (8%)
Query: 156 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI----------HRTGSLRLYNIGPQDSGL 205
V + C +GEP+P I+W + F K H + SL + ++ DSG
Sbjct: 18 VTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGR 77
Query: 206 YRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFH 265
Y C A++ +G YL + AP + + ++ G+ I+C V+ +P + W
Sbjct: 78 YDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWE-GNPINISCDVKSNPPASIHWRR 136
Query: 266 DGNSL---DSDDHVTYEHD-GFVLVLNGVRESDAGVYNCVAQNSEGS 308
D L ++ + TY +L + ++D G YNC A N G+
Sbjct: 137 DKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGT 183
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 4/125 (3%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTS 63
+ S+ L I V+ GRY C A + G ++ +++ + P FI G+
Sbjct: 59 QHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPI 118
Query: 64 RITCLVEGHPLPQMTWFHDGNSL---DSDDHVTYEHD-GFVLVLNGVRESDAGVYNCVAQ 119
I+C V+ +P + W D L ++ + TY +L + ++D G YNC A
Sbjct: 119 NISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTAT 178
Query: 120 NSEGS 124
N G+
Sbjct: 179 NHIGT 183
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 84/198 (42%), Gaps = 17/198 (8%)
Query: 46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTW--------FHDGN-SLDSDDHVTYEH 96
P IQ TTY G + + C EG P+P++TW F +G+ SLD V +H
Sbjct: 2 PHIIQLKNETTYENGQVT-LVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 97 DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSV 156
L + V+ SD+G Y+C A + G + + I AP+ + + G+ +
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI--EYAPKFISNQTIYYSWEGNPI 118
Query: 157 EIPCKPDGEPLPRISWSKDEAEF--VEDRNHKIHRTGSLRLYNIGP---QDSGLYRCTAS 211
I C P I W +D+ N K + TG + I P D G Y CTA+
Sbjct: 119 NISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTAT 178
Query: 212 NLLGEDVAEGYLTVTGAP 229
N +G E L + P
Sbjct: 179 NHIGTRFQEYILALADVP 196
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 83/194 (42%), Gaps = 17/194 (8%)
Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTW--------FHDGN-SLDSDDHVTYEH 280
P IQ TTY G + + C EG P+P++TW F +G+ SLD V +H
Sbjct: 2 PHIIQLKNETTYENGQVT-LVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 281 DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSV 340
L + V+ SD+G Y+C A + G + + I AP+ + + G+ +
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI--EYAPKFISNQTIYYSWEGNPI 118
Query: 341 EIPCKPDGEPLPRISWSKDEAEF--VEDRNHKIHRTGSLRLYNIGP---QDSGLYRCTAS 395
I C P I W +D+ N K + TG + I P D G Y CTA+
Sbjct: 119 NISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTAT 178
Query: 396 NLLGEDVAEGYLTV 409
N +G E L +
Sbjct: 179 NHIGTRFQEYILAL 192
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 15/167 (8%)
Query: 156 VEIPCKPDGEPLPRISWSK--DEAEFVE-DRN-------HKIHRTGSLRLYNIGPQDSGL 205
V + C +GEP+P I+W + D F E D++ H + SL + ++ DSG
Sbjct: 18 VTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGR 77
Query: 206 YRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFH 265
Y C A++ +G YL + AP + + ++ G+ I+C V+ +P + W
Sbjct: 78 YDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWE-GNPINISCDVKSNPPASIHWRR 136
Query: 266 DGNSL---DSDDHVTYEHD-GFVLVLNGVRESDAGVYNCVAQNSEGS 308
D L ++ + TY +L + ++D G YNC A N G+
Sbjct: 137 DKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGT 183
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 4/125 (3%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTS 63
+ S+ L I V+ GRY C A + G ++ +++ + P FI G+
Sbjct: 59 QHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPI 118
Query: 64 RITCLVEGHPLPQMTWFHDGNSL---DSDDHVTYEHD-GFVLVLNGVRESDAGVYNCVAQ 119
I+C V+ +P + W D L ++ + TY +L + ++D G YNC A
Sbjct: 119 NISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTAT 178
Query: 120 NSEGS 124
N G+
Sbjct: 179 NHIGT 183
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 78/199 (39%), Gaps = 29/199 (14%)
Query: 243 TGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYN 299
+T R C G+P P ++W +G + + H + LV+ V SD G Y
Sbjct: 29 AANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYT 88
Query: 300 CVAQNSEGSAESVAMIRI---NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW 356
CV +N GS + + + HR P + A GS VE CK + P I W
Sbjct: 89 CVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQW 148
Query: 357 SKDEAEFVEDRNHKIHRTGS-------------------LRLYNIGPQDSGLYRCTASNL 397
K VE K+ G+ LRL N+ +D G Y C A+N
Sbjct: 149 LK----HVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNF 204
Query: 398 LGEDVAEGYLTVTGENSVE 416
+G +L+V G + E
Sbjct: 205 IGVAEKAFWLSVHGPRAAE 223
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 76/194 (39%), Gaps = 29/194 (14%)
Query: 59 TGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYN 115
+T R C G+P P ++W +G + + H + LV+ V SD G Y
Sbjct: 29 AANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYT 88
Query: 116 CVAQNSEGSAESVAMIRI---NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW 172
CV +N GS + + + HR P + A GS VE CK + P I W
Sbjct: 89 CVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQW 148
Query: 173 SKDEAEFVEDRNHKIHRTGS-------------------LRLYNIGPQDSGLYRCTASNL 213
K VE K+ G+ LRL N+ +D G Y C A+N
Sbjct: 149 LK----HVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNF 204
Query: 214 LGEDVAEGYLTVTG 227
+G +L+V G
Sbjct: 205 IGVAEKAFWLSVHG 218
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 76/199 (38%), Gaps = 26/199 (13%)
Query: 148 MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI------HRTGSLRLYNIGPQ 201
+ PA ++V C G P P ISW K+ EF + H+I H+ SL + ++ P
Sbjct: 25 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGE--HRIGGIKLRHQQWSLVMESVVPS 82
Query: 202 DSGLYRCTASNLLGEDVAEGYLTVTGAPP----IFIQRPVSTTYSTGSTSRITCLVEGHP 257
D G Y C N G L V P + P + T GS C V
Sbjct: 83 DRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDA 142
Query: 258 LPQMTWFH----DGNSL--DSDDHVTYEHDGFV--------LVLNGVRESDAGVYNCVAQ 303
P + W +G+ + D +VT L L V E D G Y C A
Sbjct: 143 QPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRAT 202
Query: 304 NSEGSAESVAMIRINGHRA 322
N G AE + ++G RA
Sbjct: 203 NFIGVAEKAFWLSVHGPRA 221
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 332 MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI------HRTGSLRLYNIGPQ 385
+ PA ++V C G P P ISW K+ EF + H+I H+ SL + ++ P
Sbjct: 25 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGE--HRIGGIKLRHQQWSLVMESVVPS 82
Query: 386 DSGLYRCTASNLLG 399
D G Y C N G
Sbjct: 83 DRGNYTCVVENKFG 96
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 55/154 (35%), Gaps = 19/154 (12%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV-----NAPPIFIQRPVSTTYS 58
R LV+ V G Y+CV N G R + V + P + P + T
Sbjct: 68 RHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAV 127
Query: 59 TGSTSRITCLVEGHPLPQMTWFH----DGNSL--DSDDHVTYEHDGFV--------LVLN 104
GS C V P + W +G+ + D +VT L L
Sbjct: 128 LGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLA 187
Query: 105 GVRESDAGVYNCVAQNSEGSAESVAMIRINGHRA 138
V E D G Y C A N G AE + ++G RA
Sbjct: 188 NVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRA 221
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 76/183 (41%), Gaps = 7/183 (3%)
Query: 140 RLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW--SKDEAEFVEDRNHKIHRTGSLRLYN 197
R VV P + + G E+ C+ P P +SW +E + D + +L++ N
Sbjct: 6 REVVSPQEFKQ--GEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILN 63
Query: 198 IGPQDSGLYRCTAS-NLLGEDVAEGYLTVTGAPPIFI--QRPVSTTYSTGSTSRITCLVE 254
I D G+YRC GE + + PP Q+ + T G +C
Sbjct: 64 INKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRAS 123
Query: 255 GHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAM 314
G P P ++WF +G ++ ++ + L + + SD G Y C A N G E A
Sbjct: 124 GSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAF 183
Query: 315 IRI 317
+++
Sbjct: 184 LQV 186
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 80/185 (43%), Gaps = 28/185 (15%)
Query: 57 YSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVR------ESD 110
+ G + + C V P P ++W + +++ T + F ++ N +SD
Sbjct: 14 FKQGEDAEVVCRVSSSPAPAVSWLYH-----NEEVTTISDNRFAMLANNNLQILNINKSD 68
Query: 111 AGVYNCVAQNSEGSAESVA-------MIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPD 163
G+Y C EG E+ ++ +N A + K F+ A G + C+
Sbjct: 69 EGIYRC-----EGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRAS 123
Query: 164 GEPLPRISWSKDEAEFVEDRNHKIHRTGS---LRLYNIGPQDSGLYRCTASNLLGEDVAE 220
G P P ISW ++ + +E+ N K GS L + NI D G Y C A+N GED +
Sbjct: 124 GSPEPAISWFRN-GKLIEE-NEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQ 181
Query: 221 GYLTV 225
+L V
Sbjct: 182 AFLQV 186
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 80/185 (43%), Gaps = 28/185 (15%)
Query: 241 YSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVR------ESD 294
+ G + + C V P P ++W + +++ T + F ++ N +SD
Sbjct: 14 FKQGEDAEVVCRVSSSPAPAVSWLYH-----NEEVTTISDNRFAMLANNNLQILNINKSD 68
Query: 295 AGVYNCVAQNSEGSAESVA-------MIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPD 347
G+Y C EG E+ ++ +N A + K F+ A G + C+
Sbjct: 69 EGIYRC-----EGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRAS 123
Query: 348 GEPLPRISWSKDEAEFVEDRNHKIHRTGS---LRLYNIGPQDSGLYRCTASNLLGEDVAE 404
G P P ISW ++ + +E+ N K GS L + NI D G Y C A+N GED +
Sbjct: 124 GSPEPAISWFRN-GKLIEE-NEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQ 181
Query: 405 GYLTV 409
+L V
Sbjct: 182 AFLQV 186
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Query: 37 DLHVTVNAPPIFI--QRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTY 94
D+ V VN PP Q+ + T G +C G P P ++WF +G ++ ++
Sbjct: 88 DIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYIL 147
Query: 95 EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
+ L + + SD G Y C A N G E A +++
Sbjct: 148 KGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 324 RLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW--SKDEAEFVEDRNHKIHRTGSLRLYN 381
R VV P + + G E+ C+ P P +SW +E + D + +L++ N
Sbjct: 6 REVVSPQEFKQ--GEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILN 63
Query: 382 IGPQDSGLYRC 392
I D G+YRC
Sbjct: 64 INKSDEGIYRC 74
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 77/201 (38%), Gaps = 30/201 (14%)
Query: 60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 116
+T R C G+P P ++W +G + + H + LV+ V SD G Y C
Sbjct: 138 ANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTC 197
Query: 117 VAQNSEGSAESVAMIRI---NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWS 173
V +N GS + + + HR P + A GS VE CK + P I W
Sbjct: 198 VVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWL 257
Query: 174 KDEAEFVEDRNHKIHRTGS--------------------LRLYNIGPQDSGLYRCTASNL 213
K VE K+ G+ L L+N+ +D+G Y C A N
Sbjct: 258 K----HVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNS 313
Query: 214 LGEDVAEGYLTVTGAPPIFIQ 234
+G +L V A ++
Sbjct: 314 IGFSHHSAWLVVLPAEEELVE 334
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 74/192 (38%), Gaps = 30/192 (15%)
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 300
+T R C G+P P ++W +G + + H + LV+ V SD G Y C
Sbjct: 138 ANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTC 197
Query: 301 VAQNSEGSAESVAMIRI---NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWS 357
V +N GS + + + HR P + A GS VE CK + P I W
Sbjct: 198 VVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWL 257
Query: 358 KDEAEFVEDRNHKIHRTGS--------------------LRLYNIGPQDSGLYRCTASNL 397
K VE K+ G+ L L+N+ +D+G Y C A N
Sbjct: 258 K----HVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNS 313
Query: 398 LGEDVAEGYLTV 409
+G +L V
Sbjct: 314 IGFSHHSAWLVV 325
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 75/195 (38%), Gaps = 27/195 (13%)
Query: 148 MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI------HRTGSLRLYNIGPQ 201
+ PA ++V C G P P ISW K+ EF + H+I H+ SL + ++ P
Sbjct: 133 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGE--HRIGGIKLRHQQWSLVMESVVPS 190
Query: 202 DSGLYRCTASNLLGEDVAEGYLTVTGAPP----IFIQRPVSTTYSTGSTSRITCLVEGHP 257
D G Y C N G L V P + P + T GS C V
Sbjct: 191 DRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDA 250
Query: 258 LPQMTWFH-----------DGNS----LDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVA 302
P + W DG L + T + + VL L+ V DAG Y C+A
Sbjct: 251 QPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLA 310
Query: 303 QNSEGSAESVAMIRI 317
NS G + A + +
Sbjct: 311 GNSIGFSHHSAWLVV 325
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 332 MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI------HRTGSLRLYNIGPQ 385
+ PA ++V C G P P ISW K+ EF + H+I H+ SL + ++ P
Sbjct: 133 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGE--HRIGGIKLRHQQWSLVMESVVPS 190
Query: 386 DSGLYRCTASNLLG 399
D G Y C N G
Sbjct: 191 DRGNYTCVVENKFG 204
Score = 36.6 bits (83), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 54/150 (36%), Gaps = 20/150 (13%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV-----NAPPIFIQRPVSTTYS 58
R LV+ V G Y+CV N G R + V + P + P + T
Sbjct: 176 RHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAV 235
Query: 59 TGSTSRITCLVEGHPLPQMTWFH-----------DGNS----LDSDDHVTYEHDGFVLVL 103
GS C V P + W DG L + T + + VL L
Sbjct: 236 LGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSL 295
Query: 104 NGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
+ V DAG Y C+A NS G + A + +
Sbjct: 296 HNVTFEDAGEYTCLAGNSIGFSHHSAWLVV 325
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 76/187 (40%), Gaps = 20/187 (10%)
Query: 59 TGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYN 115
+T + C G+P+P M W +G + + + + L++ V SD G Y
Sbjct: 33 AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT 92
Query: 116 CVAQNSEGSAESVAMIRI---NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW 172
CV +N GS + + + HR P + G VE CK + P I W
Sbjct: 93 CVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQW 152
Query: 173 SK-----------DEAEFVEDRNHK-IHRTGS--LRLYNIGPQDSGLYRCTASNLLGEDV 218
K D +++ H I+ + + L L+N+ D+G Y C SN +G+
Sbjct: 153 IKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQAN 212
Query: 219 AEGYLTV 225
+LTV
Sbjct: 213 QSAWLTV 219
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 76/187 (40%), Gaps = 20/187 (10%)
Query: 243 TGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYN 299
+T + C G+P+P M W +G + + + + L++ V SD G Y
Sbjct: 33 AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT 92
Query: 300 CVAQNSEGSAESVAMIRI---NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW 356
CV +N GS + + + HR P + G VE CK + P I W
Sbjct: 93 CVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQW 152
Query: 357 SK-----------DEAEFVEDRNHK-IHRTGS--LRLYNIGPQDSGLYRCTASNLLGEDV 402
K D +++ H I+ + + L L+N+ D+G Y C SN +G+
Sbjct: 153 IKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQAN 212
Query: 403 AEGYLTV 409
+LTV
Sbjct: 213 QSAWLTV 219
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 80/223 (35%), Gaps = 35/223 (15%)
Query: 125 AESVAMIRINGHRAPRLV-VKPFDMR---APAGSSVEIPCKPDGEPLPRISWSKDEAEFV 180
AE N RAP + + R PA ++V+ C G P+P + W K+ EF
Sbjct: 2 AEDFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFK 61
Query: 181 EDRNHKIHRTGSLRLYN---------IGPQDSGLYRCTASNLLGEDVAEGYLTVT----G 227
++ HR G ++ N + P D G Y C N G +L V
Sbjct: 62 QE-----HRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRH 116
Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWF---HDGNSLDSDDHVTY----EH 280
P + P + + G C V P + W S D + Y +H
Sbjct: 117 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKH 176
Query: 281 DGF------VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
G VL L V E+DAG Y C N G A A + +
Sbjct: 177 SGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 219
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 18/104 (17%)
Query: 309 AESVAMIRINGHRAPRLV-VKPFDMR---APAGSSVEIPCKPDGEPLPRISWSKDEAEFV 364
AE N RAP + + R PA ++V+ C G P+P + W K+ EF
Sbjct: 2 AEDFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFK 61
Query: 365 EDRNHKIHRTGSLRLYN---------IGPQDSGLYRCTASNLLG 399
++ HR G ++ N + P D G Y C N G
Sbjct: 62 QE-----HRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 100
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 51/148 (34%), Gaps = 18/148 (12%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV-----NAPPIFIQRPVSTTYS 58
R L++ V G Y+CV N G H+ V + P + P + +
Sbjct: 72 RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTV 131
Query: 59 TGSTSRITCLVEGHPLPQMTWF---HDGNSLDSDDHVTY----EHDGF------VLVLNG 105
G C V P + W S D + Y +H G VL L
Sbjct: 132 VGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFN 191
Query: 106 VRESDAGVYNCVAQNSEGSAESVAMIRI 133
V E+DAG Y C N G A A + +
Sbjct: 192 VTEADAGEYICKVSNYIGQANQSAWLTV 219
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 77/185 (41%), Gaps = 20/185 (10%)
Query: 61 STSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNCV 117
+T + C G+P+P M W +G + + + + L++ V SD G Y CV
Sbjct: 35 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCV 94
Query: 118 AQNSEGSAESVAMIRINGHRAPRLVVK---PFDMRAPAGSSVEIPCKPDGEPLPRISWSK 174
+N GS + + R +++ P + G VE CK + P I W K
Sbjct: 95 VENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIK 154
Query: 175 -----------DEAEFVEDRNHK-IHRTGS--LRLYNIGPQDSGLYRCTASNLLGEDVAE 220
D +++ H I+ + + L L+N+ D+G Y C SN +G+
Sbjct: 155 HVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQS 214
Query: 221 GYLTV 225
+LTV
Sbjct: 215 AWLTV 219
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 77/185 (41%), Gaps = 20/185 (10%)
Query: 245 STSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNCV 301
+T + C G+P+P M W +G + + + + L++ V SD G Y CV
Sbjct: 35 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCV 94
Query: 302 AQNSEGSAESVAMIRINGHRAPRLVVK---PFDMRAPAGSSVEIPCKPDGEPLPRISWSK 358
+N GS + + R +++ P + G VE CK + P I W K
Sbjct: 95 VENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIK 154
Query: 359 -----------DEAEFVEDRNHK-IHRTGS--LRLYNIGPQDSGLYRCTASNLLGEDVAE 404
D +++ H I+ + + L L+N+ D+G Y C SN +G+
Sbjct: 155 HVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQS 214
Query: 405 GYLTV 409
+LTV
Sbjct: 215 AWLTV 219
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 80/223 (35%), Gaps = 35/223 (15%)
Query: 125 AESVAMIRINGHRAPRLV-VKPFDMR---APAGSSVEIPCKPDGEPLPRISWSKDEAEFV 180
AE N RAP + + R PA ++V+ C G P+P + W K+ EF
Sbjct: 2 AEDFVSENSNNKRAPYWTNTEKMEKRLHAVPAFNTVKFRCPAGGNPMPTMRWLKNGKEFK 61
Query: 181 EDRNHKIHRTGSLRLYN---------IGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPP- 230
++ HR G ++ N + P D G Y C N G +L V P
Sbjct: 62 QE-----HRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPH 116
Query: 231 ---IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWF---HDGNSLDSDDHVTY----EH 280
+ P + + G C V P + W S D + Y +H
Sbjct: 117 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKH 176
Query: 281 DGF------VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
G VL L V E+DAG Y C N G A A + +
Sbjct: 177 SGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 219
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 50/125 (40%), Gaps = 23/125 (18%)
Query: 309 AESVAMIRINGHRAPRLV-VKPFDMR---APAGSSVEIPCKPDGEPLPRISWSKDEAEFV 364
AE N RAP + + R PA ++V+ C G P+P + W K+ EF
Sbjct: 2 AEDFVSENSNNKRAPYWTNTEKMEKRLHAVPAFNTVKFRCPAGGNPMPTMRWLKNGKEFK 61
Query: 365 EDRNHKIHRTGSLRLYN---------IGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSV 415
++ HR G ++ N + P D G Y C N G +L V V
Sbjct: 62 QE-----HRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV-----V 111
Query: 416 EPAPH 420
E +PH
Sbjct: 112 ERSPH 116
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 51/148 (34%), Gaps = 18/148 (12%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV-----NAPPIFIQRPVSTTYS 58
R L++ V G Y+CV N G H+ V + P + P + +
Sbjct: 72 RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTV 131
Query: 59 TGSTSRITCLVEGHPLPQMTWF---HDGNSLDSDDHVTY----EHDGF------VLVLNG 105
G C V P + W S D + Y +H G VL L
Sbjct: 132 VGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFN 191
Query: 106 VRESDAGVYNCVAQNSEGSAESVAMIRI 133
V E+DAG Y C N G A A + +
Sbjct: 192 VTEADAGEYICKVSNYIGQANQSAWLTV 219
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 74/191 (38%), Gaps = 22/191 (11%)
Query: 60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 116
T + C G P P + W +G D + + + ++++ V SD G Y C
Sbjct: 31 AKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTC 90
Query: 117 VAQNSEGSAESVAMIRINGHRAPRLVVK---PFDMRAPAGSSVEIPCKPDGEPLPRISWS 173
+ +N GS + + R +++ P + GS+VE CK +P P I W
Sbjct: 91 IVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWL 150
Query: 174 K-----------DEAEFVE-----DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 217
K D +V+ N L L N+ +D+G Y C A N +G
Sbjct: 151 KHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLS 210
Query: 218 VAEGYLTVTGA 228
+LTV A
Sbjct: 211 HHSAWLTVLEA 221
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 73/188 (38%), Gaps = 22/188 (11%)
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 300
T + C G P P + W +G D + + + ++++ V SD G Y C
Sbjct: 31 AKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTC 90
Query: 301 VAQNSEGSAESVAMIRINGHRAPRLVVK---PFDMRAPAGSSVEIPCKPDGEPLPRISWS 357
+ +N GS + + R +++ P + GS+VE CK +P P I W
Sbjct: 91 IVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWL 150
Query: 358 K-----------DEAEFVE-----DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 401
K D +V+ N L L N+ +D+G Y C A N +G
Sbjct: 151 KHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLS 210
Query: 402 VAEGYLTV 409
+LTV
Sbjct: 211 HHSAWLTV 218
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 78/193 (40%), Gaps = 27/193 (13%)
Query: 150 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI------HRTGSLRLYNIGPQDS 203
PA +V+ C G P P + W K+ EF D H+I + T S+ + ++ P D
Sbjct: 28 VPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPD--HRIGGYKVRYATWSIIMDSVVPSDK 85
Query: 204 GLYRCTASNLLGEDVAEGYLTVTGAPP----IFIQRPVSTTYSTGSTSRITCLVEGHPLP 259
G Y C N G L V P + P + T + GS C V P P
Sbjct: 86 GNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQP 145
Query: 260 QMTWFH----DGNSLDSDD--HV---------TYEHDGFVLVLNGVRESDAGVYNCVAQN 304
+ W +G+ + D+ +V T + + VL L V DAG Y C+A N
Sbjct: 146 HIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGN 205
Query: 305 SEGSAESVAMIRI 317
S G + A + +
Sbjct: 206 SIGLSHHSAWLTV 218
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 60/150 (40%), Gaps = 20/150 (13%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV-----NAPPIFIQRPVSTTYS 58
R ++ +++ V G Y+C+ N G + V + P + P + T +
Sbjct: 69 RYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVA 128
Query: 59 TGSTSRITCLVEGHPLPQMTWFH----DGNSLDSDD--HV---------TYEHDGFVLVL 103
GS C V P P + W +G+ + D+ +V T + + VL L
Sbjct: 129 LGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHL 188
Query: 104 NGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
V DAG Y C+A NS G + A + +
Sbjct: 189 RNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 218
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 334 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI------HRTGSLRLYNIGPQDS 387
PA +V+ C G P P + W K+ EF D H+I + T S+ + ++ P D
Sbjct: 28 VPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPD--HRIGGYKVRYATWSIIMDSVVPSDK 85
Query: 388 GLYRCTASNLLG 399
G Y C N G
Sbjct: 86 GNYTCIVENEYG 97
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 74/191 (38%), Gaps = 22/191 (11%)
Query: 60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 116
T + C G P P + W +G D + + + ++++ V SD G Y C
Sbjct: 32 AKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTC 91
Query: 117 VAQNSEGSAESVAMIRINGHRAPRLVVK---PFDMRAPAGSSVEIPCKPDGEPLPRISWS 173
+ +N GS + + R +++ P + GS+VE CK +P P I W
Sbjct: 92 IVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWL 151
Query: 174 K-----------DEAEFVE-----DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 217
K D +V+ N L L N+ +D+G Y C A N +G
Sbjct: 152 KHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLS 211
Query: 218 VAEGYLTVTGA 228
+LTV A
Sbjct: 212 HHSAWLTVLEA 222
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 73/188 (38%), Gaps = 22/188 (11%)
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 300
T + C G P P + W +G D + + + ++++ V SD G Y C
Sbjct: 32 AKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTC 91
Query: 301 VAQNSEGSAESVAMIRINGHRAPRLVVK---PFDMRAPAGSSVEIPCKPDGEPLPRISWS 357
+ +N GS + + R +++ P + GS+VE CK +P P I W
Sbjct: 92 IVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWL 151
Query: 358 K-----------DEAEFVE-----DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 401
K D +V+ N L L N+ +D+G Y C A N +G
Sbjct: 152 KHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLS 211
Query: 402 VAEGYLTV 409
+LTV
Sbjct: 212 HHSAWLTV 219
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 78/193 (40%), Gaps = 27/193 (13%)
Query: 150 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI------HRTGSLRLYNIGPQDS 203
PA +V+ C G P P + W K+ EF D H+I + T S+ + ++ P D
Sbjct: 29 VPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPD--HRIGGYKVRYATWSIIMDSVVPSDK 86
Query: 204 GLYRCTASNLLGEDVAEGYLTVTGAPP----IFIQRPVSTTYSTGSTSRITCLVEGHPLP 259
G Y C N G L V P + P + T + GS C V P P
Sbjct: 87 GNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQP 146
Query: 260 QMTWFH----DGNSLDSDD--HV---------TYEHDGFVLVLNGVRESDAGVYNCVAQN 304
+ W +G+ + D+ +V T + + VL L V DAG Y C+A N
Sbjct: 147 HIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGN 206
Query: 305 SEGSAESVAMIRI 317
S G + A + +
Sbjct: 207 SIGLSHHSAWLTV 219
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 60/150 (40%), Gaps = 20/150 (13%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV-----NAPPIFIQRPVSTTYS 58
R ++ +++ V G Y+C+ N G + V + P + P + T +
Sbjct: 70 RYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVA 129
Query: 59 TGSTSRITCLVEGHPLPQMTWFH----DGNSLDSDD--HV---------TYEHDGFVLVL 103
GS C V P P + W +G+ + D+ +V T + + VL L
Sbjct: 130 LGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHL 189
Query: 104 NGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
V DAG Y C+A NS G + A + +
Sbjct: 190 RNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 219
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 334 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI------HRTGSLRLYNIGPQDS 387
PA +V+ C G P P + W K+ EF D H+I + T S+ + ++ P D
Sbjct: 29 VPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPD--HRIGGYKVRYATWSIIMDSVVPSDK 86
Query: 388 GLYRCTASNLLG 399
G Y C N G
Sbjct: 87 GNYTCIVENEYG 98
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 74/191 (38%), Gaps = 22/191 (11%)
Query: 60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 116
T + C G P P + W +G D + + + ++++ V SD G Y C
Sbjct: 31 AKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTC 90
Query: 117 VAQNSEGSAESVAMIRINGHRAPRLVVK---PFDMRAPAGSSVEIPCKPDGEPLPRISWS 173
+ +N GS + + R +++ P + GS+VE CK +P P I W
Sbjct: 91 IVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWL 150
Query: 174 K-----------DEAEFVE-----DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 217
K D +V+ N L L N+ +D+G Y C A N +G
Sbjct: 151 KHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLS 210
Query: 218 VAEGYLTVTGA 228
+LTV A
Sbjct: 211 HHSAWLTVLEA 221
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 73/188 (38%), Gaps = 22/188 (11%)
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 300
T + C G P P + W +G D + + + ++++ V SD G Y C
Sbjct: 31 AKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTC 90
Query: 301 VAQNSEGSAESVAMIRINGHRAPRLVVK---PFDMRAPAGSSVEIPCKPDGEPLPRISWS 357
+ +N GS + + R +++ P + GS+VE CK +P P I W
Sbjct: 91 IVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWL 150
Query: 358 K-----------DEAEFVE-----DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 401
K D +V+ N L L N+ +D+G Y C A N +G
Sbjct: 151 KHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLS 210
Query: 402 VAEGYLTV 409
+LTV
Sbjct: 211 HHSAWLTV 218
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 78/193 (40%), Gaps = 27/193 (13%)
Query: 150 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI------HRTGSLRLYNIGPQDS 203
PA +V+ C G P P + W K+ EF D H+I + T S+ + ++ P D
Sbjct: 28 VPAAKTVKFKCPSSGTPNPTLRWLKNGKEFKPD--HRIGGYKVRYATWSIIMDSVVPSDK 85
Query: 204 GLYRCTASNLLGEDVAEGYLTVTGAPP----IFIQRPVSTTYSTGSTSRITCLVEGHPLP 259
G Y C N G L V P + P + T + GS C V P P
Sbjct: 86 GNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQP 145
Query: 260 QMTWFH----DGNSLDSDD--HV---------TYEHDGFVLVLNGVRESDAGVYNCVAQN 304
+ W +G+ + D+ +V T + + VL L V DAG Y C+A N
Sbjct: 146 HIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGN 205
Query: 305 SEGSAESVAMIRI 317
S G + A + +
Sbjct: 206 SIGLSHHSAWLTV 218
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 60/150 (40%), Gaps = 20/150 (13%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV-----NAPPIFIQRPVSTTYS 58
R ++ +++ V G Y+C+ N G + V + P + P + T +
Sbjct: 69 RYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVA 128
Query: 59 TGSTSRITCLVEGHPLPQMTWFH----DGNSLDSDD--HV---------TYEHDGFVLVL 103
GS C V P P + W +G+ + D+ +V T + + VL L
Sbjct: 129 LGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHL 188
Query: 104 NGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
V DAG Y C+A NS G + A + +
Sbjct: 189 RNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 218
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 334 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI------HRTGSLRLYNIGPQDS 387
PA +V+ C G P P + W K+ EF D H+I + T S+ + ++ P D
Sbjct: 28 VPAAKTVKFKCPSSGTPNPTLRWLKNGKEFKPD--HRIGGYKVRYATWSIIMDSVVPSDK 85
Query: 388 GLYRCTASNLLG 399
G Y C N G
Sbjct: 86 GNYTCIVENEYG 97
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 74/192 (38%), Gaps = 22/192 (11%)
Query: 60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 116
+T + C G+P+P M W +G + + + + L++ V SD G Y C
Sbjct: 26 ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 85
Query: 117 VAQNSEGSAESVAMIRI---NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW- 172
V +N GS + + + HR P + G VE CK + P I W
Sbjct: 86 VVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 145
Query: 173 ---SKDEAEFVEDR------------NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 217
K+ +++ D N L + N+ +D+G Y C A N +G
Sbjct: 146 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205
Query: 218 VAEGYLTVTGAP 229
+LTV AP
Sbjct: 206 FHSAWLTVLPAP 217
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 72/188 (38%), Gaps = 22/188 (11%)
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 300
+T + C G+P+P M W +G + + + + L++ V SD G Y C
Sbjct: 26 ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 85
Query: 301 VAQNSEGSAESVAMIRI---NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW- 356
V +N GS + + + HR P + G VE CK + P I W
Sbjct: 86 VVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 145
Query: 357 ---SKDEAEFVEDR------------NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 401
K+ +++ D N L + N+ +D+G Y C A N +G
Sbjct: 146 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205
Query: 402 VAEGYLTV 409
+LTV
Sbjct: 206 FHSAWLTV 213
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 72/195 (36%), Gaps = 33/195 (16%)
Query: 151 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN---------IGPQ 201
PA ++V+ C G P+P + W K+ EF ++ HR G ++ N + P
Sbjct: 24 PAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE-----HRIGGYKVRNQHWSLIMESVVPS 78
Query: 202 DSGLYRCTASNLLGEDVAEGYLTVT----GAPPIFIQRPVSTTYSTGSTSRITCLVEGHP 257
D G Y C N G +L V P + P + + G C V
Sbjct: 79 DKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDA 138
Query: 258 LPQMTWFH-----------DG----NSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVA 302
P + W DG L + T + + VL + V DAG Y C+A
Sbjct: 139 QPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLA 198
Query: 303 QNSEGSAESVAMIRI 317
NS G + A + +
Sbjct: 199 GNSIGISFHSAWLTV 213
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 14/74 (18%)
Query: 335 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN---------IGPQ 385
PA ++V+ C G P+P + W K+ EF ++ HR G ++ N + P
Sbjct: 24 PAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE-----HRIGGYKVRNQHWSLIMESVVPS 78
Query: 386 DSGLYRCTASNLLG 399
D G Y C N G
Sbjct: 79 DKGNYTCVVENEYG 92
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 52/150 (34%), Gaps = 20/150 (13%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV-----NAPPIFIQRPVSTTYS 58
R L++ V G Y+CV N G H+ V + P + P + +
Sbjct: 64 RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTV 123
Query: 59 TGSTSRITCLVEGHPLPQMTWFH-----------DG----NSLDSDDHVTYEHDGFVLVL 103
G C V P + W DG L + T + + VL +
Sbjct: 124 VGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYI 183
Query: 104 NGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
V DAG Y C+A NS G + A + +
Sbjct: 184 RNVTFEDAGEYTCLAGNSIGISFHSAWLTV 213
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 74/192 (38%), Gaps = 22/192 (11%)
Query: 60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 116
+T + C G+P+P M W +G + + + + L++ V SD G Y C
Sbjct: 24 ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 83
Query: 117 VAQNSEGSAESVAMIRI---NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW- 172
V +N GS + + + HR P + G VE CK + P I W
Sbjct: 84 VVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 143
Query: 173 ---SKDEAEFVEDR------------NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 217
K+ +++ D N L + N+ +D+G Y C A N +G
Sbjct: 144 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 203
Query: 218 VAEGYLTVTGAP 229
+LTV AP
Sbjct: 204 FHSAWLTVLPAP 215
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 77/203 (37%), Gaps = 28/203 (13%)
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 300
+T + C G+P+P M W +G + + + + L++ V SD G Y C
Sbjct: 24 ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 83
Query: 301 VAQNSEGSAESVAMIRI---NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW- 356
V +N GS + + + HR P + G VE CK + P I W
Sbjct: 84 VVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 143
Query: 357 ---SKDEAEFVEDR------------NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 401
K+ +++ D N L + N+ +D+G Y C A N +G
Sbjct: 144 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 203
Query: 402 VAEGYLTVTGENSVEPAPHTSRE 424
+LTV PAP +E
Sbjct: 204 FHSAWLTVL------PAPGREKE 220
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 72/195 (36%), Gaps = 33/195 (16%)
Query: 151 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN---------IGPQ 201
PA ++V+ C G P+P + W K+ EF ++ HR G ++ N + P
Sbjct: 22 PAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE-----HRIGGYKVRNQHWSLIMESVVPS 76
Query: 202 DSGLYRCTASNLLGEDVAEGYLTVT----GAPPIFIQRPVSTTYSTGSTSRITCLVEGHP 257
D G Y C N G +L V P + P + + G C V
Sbjct: 77 DKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDA 136
Query: 258 LPQMTWFH-----------DG----NSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVA 302
P + W DG L + T + + VL + V DAG Y C+A
Sbjct: 137 QPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLA 196
Query: 303 QNSEGSAESVAMIRI 317
NS G + A + +
Sbjct: 197 GNSIGISFHSAWLTV 211
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 14/74 (18%)
Query: 335 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN---------IGPQ 385
PA ++V+ C G P+P + W K+ EF ++ HR G ++ N + P
Sbjct: 22 PAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE-----HRIGGYKVRNQHWSLIMESVVPS 76
Query: 386 DSGLYRCTASNLLG 399
D G Y C N G
Sbjct: 77 DKGNYTCVVENEYG 90
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 52/150 (34%), Gaps = 20/150 (13%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV-----NAPPIFIQRPVSTTYS 58
R L++ V G Y+CV N G H+ V + P + P + +
Sbjct: 62 RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTV 121
Query: 59 TGSTSRITCLVEGHPLPQMTWFH-----------DG----NSLDSDDHVTYEHDGFVLVL 103
G C V P + W DG L + T + + VL +
Sbjct: 122 VGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYI 181
Query: 104 NGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
V DAG Y C+A NS G + A + +
Sbjct: 182 RNVTFEDAGEYTCLAGNSIGISFHSAWLTV 211
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 75/192 (39%), Gaps = 22/192 (11%)
Query: 60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 116
+T + C G+P+P M W +G + + + + L++ V SD G Y C
Sbjct: 25 ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 84
Query: 117 VAQNSEGSAESVAMIRINGHRAPRLVVK---PFDMRAPAGSSVEIPCKPDGEPLPRISW- 172
V +N GS + + R +++ P + G VE CK + P I W
Sbjct: 85 VVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 144
Query: 173 ---SKDEAEFVEDR------------NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 217
K+ +++ D N L + N+ +D+G Y C A N +G
Sbjct: 145 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 204
Query: 218 VAEGYLTVTGAP 229
+LTV AP
Sbjct: 205 FHSAWLTVLPAP 216
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 73/188 (38%), Gaps = 22/188 (11%)
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 300
+T + C G+P+P M W +G + + + + L++ V SD G Y C
Sbjct: 25 ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 84
Query: 301 VAQNSEGSAESVAMIRINGHRAPRLVVK---PFDMRAPAGSSVEIPCKPDGEPLPRISW- 356
V +N GS + + R +++ P + G VE CK + P I W
Sbjct: 85 VVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 144
Query: 357 ---SKDEAEFVEDR------------NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 401
K+ +++ D N L + N+ +D+G Y C A N +G
Sbjct: 145 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 204
Query: 402 VAEGYLTV 409
+LTV
Sbjct: 205 FHSAWLTV 212
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 72/195 (36%), Gaps = 33/195 (16%)
Query: 151 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN---------IGPQ 201
PA ++V+ C G P+P + W K+ EF ++ HR G ++ N + P
Sbjct: 23 PAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE-----HRIGGYKVRNQHWSLIMESVVPS 77
Query: 202 DSGLYRCTASNLLGEDVAEGYLTVTGAPP----IFIQRPVSTTYSTGSTSRITCLVEGHP 257
D G Y C N G +L V P + P + + G C V
Sbjct: 78 DKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDA 137
Query: 258 LPQMTWFH-----------DG----NSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVA 302
P + W DG L + T + + VL + V DAG Y C+A
Sbjct: 138 QPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLA 197
Query: 303 QNSEGSAESVAMIRI 317
NS G + A + +
Sbjct: 198 GNSIGISFHSAWLTV 212
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 19/95 (20%)
Query: 335 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN---------IGPQ 385
PA ++V+ C G P+P + W K+ EF ++ HR G ++ N + P
Sbjct: 23 PAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE-----HRIGGYKVRNQHWSLIMESVVPS 77
Query: 386 DSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPH 420
D G Y C N G +L V VE +PH
Sbjct: 78 DKGNYTCVVENEYGSINHTYHLDV-----VERSPH 107
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 52/150 (34%), Gaps = 20/150 (13%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV-----NAPPIFIQRPVSTTYS 58
R L++ V G Y+CV N G H+ V + P + P + +
Sbjct: 63 RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTV 122
Query: 59 TGSTSRITCLVEGHPLPQMTWFH-----------DG----NSLDSDDHVTYEHDGFVLVL 103
G C V P + W DG L + T + + VL +
Sbjct: 123 VGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYI 182
Query: 104 NGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
V DAG Y C+A NS G + A + +
Sbjct: 183 RNVTFEDAGEYTCLAGNSIGISFHSAWLTV 212
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 74/192 (38%), Gaps = 22/192 (11%)
Query: 60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 116
+T + C G+P+P M W +G + + + + L++ V SD G Y C
Sbjct: 26 ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 85
Query: 117 VAQNSEGSAESVAMIRI---NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW- 172
V +N GS + + + HR P + G VE CK + P I W
Sbjct: 86 VVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 145
Query: 173 ---SKDEAEFVEDR------------NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 217
K+ +++ D N L + N+ +D+G Y C A N +G
Sbjct: 146 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205
Query: 218 VAEGYLTVTGAP 229
+LTV AP
Sbjct: 206 FHSAWLTVLPAP 217
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 72/188 (38%), Gaps = 22/188 (11%)
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 300
+T + C G+P+P M W +G + + + + L++ V SD G Y C
Sbjct: 26 ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 85
Query: 301 VAQNSEGSAESVAMIRI---NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW- 356
V +N GS + + + HR P + G VE CK + P I W
Sbjct: 86 VVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 145
Query: 357 ---SKDEAEFVEDR------------NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 401
K+ +++ D N L + N+ +D+G Y C A N +G
Sbjct: 146 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205
Query: 402 VAEGYLTV 409
+LTV
Sbjct: 206 FHSAWLTV 213
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 72/195 (36%), Gaps = 33/195 (16%)
Query: 151 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN---------IGPQ 201
PA ++V+ C G P+P + W K+ EF ++ HR G ++ N + P
Sbjct: 24 PAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE-----HRIGGYKVRNQHWSLIMESVVPS 78
Query: 202 DSGLYRCTASNLLGEDVAEGYLTVTGAPP----IFIQRPVSTTYSTGSTSRITCLVEGHP 257
D G Y C N G +L V P + P + + G C V
Sbjct: 79 DKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDA 138
Query: 258 LPQMTWFH-----------DG----NSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVA 302
P + W DG L + T + + VL + V DAG Y C+A
Sbjct: 139 QPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLA 198
Query: 303 QNSEGSAESVAMIRI 317
NS G + A + +
Sbjct: 199 GNSIGISFHSAWLTV 213
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 19/95 (20%)
Query: 335 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN---------IGPQ 385
PA ++V+ C G P+P + W K+ EF ++ HR G ++ N + P
Sbjct: 24 PAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE-----HRIGGYKVRNQHWSLIMESVVPS 78
Query: 386 DSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPH 420
D G Y C N G +L V VE +PH
Sbjct: 79 DKGNYTCVVENEYGSINHTYHLDV-----VERSPH 108
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 52/150 (34%), Gaps = 20/150 (13%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV-----NAPPIFIQRPVSTTYS 58
R L++ V G Y+CV N G H+ V + P + P + +
Sbjct: 64 RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTV 123
Query: 59 TGSTSRITCLVEGHPLPQMTWFH-----------DG----NSLDSDDHVTYEHDGFVLVL 103
G C V P + W DG L + T + + VL +
Sbjct: 124 VGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYI 183
Query: 104 NGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
V DAG Y C+A NS G + A + +
Sbjct: 184 RNVTFEDAGEYTCLAGNSIGISFHSAWLTV 213
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 75/192 (39%), Gaps = 22/192 (11%)
Query: 60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 116
+T + C G+P+P M W +G + + + + L++ V SD G Y C
Sbjct: 26 ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 85
Query: 117 VAQNSEGSAESVAMIRINGHRAPRLVVK---PFDMRAPAGSSVEIPCKPDGEPLPRISW- 172
V +N GS + + R +++ P + G VE CK + P I W
Sbjct: 86 VVENEYGSINHTYHLDVVERWPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 145
Query: 173 ---SKDEAEFVEDR------------NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 217
K+ +++ D N L + N+ +D+G Y C A N +G
Sbjct: 146 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205
Query: 218 VAEGYLTVTGAP 229
+LTV AP
Sbjct: 206 FHSAWLTVLPAP 217
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 73/188 (38%), Gaps = 22/188 (11%)
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 300
+T + C G+P+P M W +G + + + + L++ V SD G Y C
Sbjct: 26 ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 85
Query: 301 VAQNSEGSAESVAMIRINGHRAPRLVVK---PFDMRAPAGSSVEIPCKPDGEPLPRISW- 356
V +N GS + + R +++ P + G VE CK + P I W
Sbjct: 86 VVENEYGSINHTYHLDVVERWPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 145
Query: 357 ---SKDEAEFVEDR------------NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 401
K+ +++ D N L + N+ +D+G Y C A N +G
Sbjct: 146 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205
Query: 402 VAEGYLTV 409
+LTV
Sbjct: 206 FHSAWLTV 213
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 72/195 (36%), Gaps = 33/195 (16%)
Query: 151 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN---------IGPQ 201
PA ++V+ C G P+P + W K+ EF ++ HR G ++ N + P
Sbjct: 24 PAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE-----HRIGGYKVRNQHWSLIMESVVPS 78
Query: 202 DSGLYRCTASNLLGEDVAEGYLTVT----GAPPIFIQRPVSTTYSTGSTSRITCLVEGHP 257
D G Y C N G +L V P + P + + G C V
Sbjct: 79 DKGNYTCVVENEYGSINHTYHLDVVERWPHRPILQAGLPANASTVVGGDVEFVCKVYSDA 138
Query: 258 LPQMTWFH-----------DG----NSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVA 302
P + W DG L + T + + VL + V DAG Y C+A
Sbjct: 139 QPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLA 198
Query: 303 QNSEGSAESVAMIRI 317
NS G + A + +
Sbjct: 199 GNSIGISFHSAWLTV 213
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 14/74 (18%)
Query: 335 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN---------IGPQ 385
PA ++V+ C G P+P + W K+ EF ++ HR G ++ N + P
Sbjct: 24 PAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE-----HRIGGYKVRNQHWSLIMESVVPS 78
Query: 386 DSGLYRCTASNLLG 399
D G Y C N G
Sbjct: 79 DKGNYTCVVENEYG 92
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 52/150 (34%), Gaps = 20/150 (13%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV-----NAPPIFIQRPVSTTYS 58
R L++ V G Y+CV N G H+ V + P + P + +
Sbjct: 64 RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERWPHRPILQAGLPANASTV 123
Query: 59 TGSTSRITCLVEGHPLPQMTWFH-----------DG----NSLDSDDHVTYEHDGFVLVL 103
G C V P + W DG L + T + + VL +
Sbjct: 124 VGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYI 183
Query: 104 NGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
V DAG Y C+A NS G + A + +
Sbjct: 184 RNVTFEDAGEYTCLAGNSIGISFHSAWLTV 213
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD---HVTYEHDGFVL 101
PP FIQ P + + G R+ V G P P ++W+ +G ++ SDD + E L
Sbjct: 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSL 64
Query: 102 VLNGVRESDAGVYNCVAQNSEGSA 125
+ VR SDAG Y CVA+N G A
Sbjct: 65 IFEVVRASDAGAYACVAKNRAGEA 88
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD---HVTYEHDGFVL 285
PP FIQ P + + G R+ V G P P ++W+ +G ++ SDD + E L
Sbjct: 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSL 64
Query: 286 VLNGVRESDAGVYNCVAQNSEGSA 309
+ VR SDAG Y CVA+N G A
Sbjct: 65 IFEVVRASDAGAYACVAKNRAGEA 88
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHK--IHRTG--SLR 194
PR + P +M G + K G P P +SW + D HK + G SL
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLI 65
Query: 195 LYNIGPQDSGLYRCTASNLLGE 216
+ D+G Y C A N GE
Sbjct: 66 FEVVRASDAGAYACVAKNRAGE 87
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHK--IHRTG--SLR 378
PR + P +M G + K G P P +SW + D HK + G SL
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLI 65
Query: 379 LYNIGPQDSGLYRCTASNLLGE 400
+ D+G Y C A N GE
Sbjct: 66 FEVVRASDAGAYACVAKNRAGE 87
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 59.3 bits (142), Expect = 9e-09, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 7/103 (6%)
Query: 37 DLHVTVNAPPIFIQRPVSTTYSTGSTSR---ITCLVEGHPLPQMTWFHDGNSLDSDDH-- 91
D+ V VN PP R ST +T + S+ + C +G P P MTW DG ++ +D+
Sbjct: 3 DIQVIVNVPPSVRARQ-STMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEE 61
Query: 92 -VTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
++ +DG L++ V +SD Y C+A+N G ++ +++
Sbjct: 62 KYSFNYDGSELIIKKVDKSDEAEYICIAENKAGEQDATIHLKV 104
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 234 QRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH---VTYEHDGFVLVLNGV 290
Q ++ T + + + C +G P P MTW DG ++ +D+ ++ +DG L++ V
Sbjct: 18 QSTMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKKV 77
Query: 291 RESDAGVYNCVAQNSEGSAESVAMIRI 317
+SD Y C+A+N G ++ +++
Sbjct: 78 DKSDEAEYICIAENKAGEQDATIHLKV 104
Score = 37.4 bits (85), Expect = 0.035, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 139 PRLVVKPFDMRAPA--GSSVEIPCKPDGEPLPRISWSKD----EAEFVEDRNHKIHRTGS 192
P + + M A A SV + C DG P P ++W+KD E E E++ +
Sbjct: 12 PSVRARQSTMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSE 71
Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
L + + D Y C A N GE A +L V
Sbjct: 72 LIIKKVDKSDEAEYICIAENKAGEQDATIHLKV 104
Score = 37.4 bits (85), Expect = 0.035, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 323 PRLVVKPFDMRAPA--GSSVEIPCKPDGEPLPRISWSKD----EAEFVEDRNHKIHRTGS 376
P + + M A A SV + C DG P P ++W+KD E E E++ +
Sbjct: 12 PSVRARQSTMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSE 71
Query: 377 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
L + + D Y C A N GE A +L V
Sbjct: 72 LIIKKVDKSDEAEYICIAENKAGEQDATIHLKV 104
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 227 GAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-- 284
G+PP F++RP +G+ + + C+V G P P + W G L + + +++ DG
Sbjct: 12 GSPPCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHG 71
Query: 285 LVLNGVRESDAGVYNCVAQN 304
L+L +DAGVY C A+N
Sbjct: 72 LLLTAALPTDAGVYVCRARN 91
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 43 NAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-- 100
+PP F++RP +G+ + + C+V G P P + W G L + + +++ DG
Sbjct: 12 GSPPCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHG 71
Query: 101 LVLNGVRESDAGVYNCVAQN 120
L+L +DAGVY C A+N
Sbjct: 72 LLLTAALPTDAGVYVCRARN 91
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS---LRL 195
P + +P +R +G+ E+ C GEP P + W K + G+ L L
Sbjct: 15 PCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLL 74
Query: 196 YNIGPQDSGLYRCTASN 212
P D+G+Y C A N
Sbjct: 75 TAALPTDAGVYVCRARN 91
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS---LRL 379
P + +P +R +G+ E+ C GEP P + W K + G+ L L
Sbjct: 15 PCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLL 74
Query: 380 YNIGPQDSGLYRCTASN 396
P D+G+Y C A N
Sbjct: 75 TAALPTDAGVYVCRARN 91
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 12/172 (6%)
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVV---KPFDMRAPAGSSVE 157
L ++GV SD G+Y C A + + ++ +R+ H P + + A G V
Sbjct: 162 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV--HEKPFVAFGSGMESLVEATVGERVR 219
Query: 158 IPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 217
IP K G P P I W K+ + NH I L + + +D+G Y +N + ++
Sbjct: 220 IPAKYLGYPPPEIKWYKNGIPL--ESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKE 277
Query: 218 VAEGYLT-VTGAPPIFIQRPVST---TYSTGSTSRITCLVEGHPLP-QMTWF 264
++ V PP ++ + + +Y G+T +TC V P P + W+
Sbjct: 278 KQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWY 329
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 63/304 (20%), Positives = 124/304 (40%), Gaps = 33/304 (10%)
Query: 75 PQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVA-MIRI 133
P+ + DGN + D + +++ S AG+ C A+ ++ S +S+ ++ +
Sbjct: 36 PEKRFVPDGNRISWDSKKGFTIPSYMI-------SYAGMVFCEAKINDESYQSIMYIVVV 88
Query: 134 NGHRAPRLVVKP-FDMRAPAGSSVEIPCKPDGEPLPRI--SW----SKDEAEFVEDRNHK 186
G+R +V+ P + G + + C E I +W SK + + + +R+ K
Sbjct: 89 VGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLK 148
Query: 187 IHRTGSLRLY-------NIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVST 239
++ + + D GLY C AS+ L ++ V P + + +
Sbjct: 149 TQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMES 208
Query: 240 TY--STGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGV 297
+ G RI G+P P++ W+ +G L+S+ + G VL + V E D G
Sbjct: 209 LVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTI---KAGHVLTIMEVSERDTGN 265
Query: 298 YNCVAQNSEGSAESVAMIRINGHRAPRL----VVKPFDMRAPAGSSVEIPCKPDGEPLP- 352
Y + N + ++ + + P++ ++ P D G++ + C P P
Sbjct: 266 YTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVD-SYQYGTTQTLTCTVYAIPPPH 324
Query: 353 RISW 356
I W
Sbjct: 325 HIHW 328
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 7/120 (5%)
Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVV---KPFDMRAPAGSSVE 341
L ++GV SD G+Y C A + + ++ +R+ H P + + A G V
Sbjct: 162 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV--HEKPFVAFGSGMESLVEATVGERVR 219
Query: 342 IPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 401
IP K G P P I W K+ + NH I L + + +D+G Y +N + ++
Sbjct: 220 IPAKYLGYPPPEIKWYKNGIPL--ESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKE 277
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 75/182 (41%), Gaps = 16/182 (8%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIF-----IQRPVST 55
++ ++ + L I GV R G Y+C A + + V V+ P ++ V
Sbjct: 153 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEA 212
Query: 56 TYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYN 115
T G RI G+P P++ W+ +G L+S+ + G VL + V E D G Y
Sbjct: 213 T--VGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTI---KAGHVLTIMEVSERDTGNYT 267
Query: 116 CVAQNSEGSAESVAMIRINGHRAPRL----VVKPFDMRAPAGSSVEIPCKPDGEPLP-RI 170
+ N + ++ + + P++ ++ P D G++ + C P P I
Sbjct: 268 VILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVD-SYQYGTTQTLTCTVYAIPPPHHI 326
Query: 171 SW 172
W
Sbjct: 327 HW 328
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 44/186 (23%), Positives = 76/186 (40%), Gaps = 20/186 (10%)
Query: 60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 116
+T + C G+P P W +G + + + + L+ V SD G Y C
Sbjct: 33 ANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTC 92
Query: 117 VAQNSEGSAESVAMIRINGHRAPRLVVK---PFDMRAPAGSSVEIPCKPDGEPLPRISW- 172
V +N GS + + R +++ P + G VE CK + P I W
Sbjct: 93 VVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 152
Query: 173 ---SKDEAEFVED--------RNHKIHRTGS--LRLYNIGPQDSGLYRCTASNLLGEDVA 219
K+ +++ D ++ I+ + + L L+N+ D+G Y C SN +G+
Sbjct: 153 KHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQ 212
Query: 220 EGYLTV 225
+LTV
Sbjct: 213 SAWLTV 218
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 44/186 (23%), Positives = 76/186 (40%), Gaps = 20/186 (10%)
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 300
+T + C G+P P W +G + + + + L+ V SD G Y C
Sbjct: 33 ANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTC 92
Query: 301 VAQNSEGSAESVAMIRINGHRAPRLVVK---PFDMRAPAGSSVEIPCKPDGEPLPRISW- 356
V +N GS + + R +++ P + G VE CK + P I W
Sbjct: 93 VVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 152
Query: 357 ---SKDEAEFVED--------RNHKIHRTGS--LRLYNIGPQDSGLYRCTASNLLGEDVA 403
K+ +++ D ++ I+ + + L L+N+ D+G Y C SN +G+
Sbjct: 153 KHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQ 212
Query: 404 EGYLTV 409
+LTV
Sbjct: 213 SAWLTV 218
Score = 53.5 bits (127), Expect = 5e-07, Method: Composition-based stats.
Identities = 50/193 (25%), Positives = 69/193 (35%), Gaps = 31/193 (16%)
Query: 151 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN---------IGPQ 201
PA ++V+ C G P P W K+ EF ++ HR G ++ N + P
Sbjct: 31 PAANTVKFRCPAGGNPXPTXRWLKNGKEFKQE-----HRIGGYKVRNQHWSLIXESVVPS 85
Query: 202 DSGLYRCTASNLLGEDVAEGYLTVTGAPP----IFIQRPVSTTYSTGSTSRITCLVEGHP 257
D G Y C N G +L V P + P + + G C V
Sbjct: 86 DKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDA 145
Query: 258 LPQMTWF---HDGNSLDSDDHVTY----EHDGF------VLVLNGVRESDAGVYNCVAQN 304
P + W S D + Y +H G VL L V E+DAG Y C N
Sbjct: 146 QPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSN 205
Query: 305 SEGSAESVAMIRI 317
G A A + +
Sbjct: 206 YIGQANQSAWLTV 218
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 19/95 (20%)
Query: 335 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN---------IGPQ 385
PA ++V+ C G P P W K+ EF ++ HR G ++ N + P
Sbjct: 31 PAANTVKFRCPAGGNPXPTXRWLKNGKEFKQE-----HRIGGYKVRNQHWSLIXESVVPS 85
Query: 386 DSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPH 420
D G Y C N G +L V VE +PH
Sbjct: 86 DKGNYTCVVENEYGSINHTYHLDV-----VERSPH 115
Score = 35.8 bits (81), Expect = 0.10, Method: Composition-based stats.
Identities = 37/148 (25%), Positives = 50/148 (33%), Gaps = 18/148 (12%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV-----NAPPIFIQRPVSTTYS 58
R L+ V G Y+CV N G H+ V + P + P + +
Sbjct: 71 RNQHWSLIXESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTV 130
Query: 59 TGSTSRITCLVEGHPLPQMTWF---HDGNSLDSDDHVTY----EHDGF------VLVLNG 105
G C V P + W S D + Y +H G VL L
Sbjct: 131 VGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFN 190
Query: 106 VRESDAGVYNCVAQNSEGSAESVAMIRI 133
V E+DAG Y C N G A A + +
Sbjct: 191 VTEADAGEYICKVSNYIGQANQSAWLTV 218
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 43 NAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDS-DDHVTYEHDGFVL 101
+ PPI +Q P + T + T+ + C G PLP ++W +G + D T + G +
Sbjct: 6 SGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQ 65
Query: 102 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 134
+ N +R SD G Y CVA +S G A++ +
Sbjct: 66 IKN-LRISDTGTYTCVATSSSGETSWSAVLDVT 97
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDS-DDHVTYEHDGFVLV 286
PPI +Q P + T + T+ + C G PLP ++W +G + D T + G + +
Sbjct: 7 GPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQI 66
Query: 287 LNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 318
N +R SD G Y CVA +S G A++ +
Sbjct: 67 KN-LRISDTGTYTCVATSSSGETSWSAVLDVT 97
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 134 NGHRAPRLVVK-PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEF-VEDRNHKIHRTG 191
+G P ++++ P + + + CK G+PLP ISW K+ F D I G
Sbjct: 3 SGSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQG 62
Query: 192 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 226
+L++ N+ D+G Y C A++ GE L VT
Sbjct: 63 TLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVT 97
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 318 NGHRAPRLVVK-PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEF-VEDRNHKIHRTG 375
+G P ++++ P + + + CK G+PLP ISW K+ F D I G
Sbjct: 3 SGSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQG 62
Query: 376 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
+L++ N+ D+G Y C A++ GE L VT
Sbjct: 63 TLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVT 97
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/271 (20%), Positives = 102/271 (37%), Gaps = 38/271 (14%)
Query: 77 MTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGH 136
+ W+ D + D+ ++ L++ + DAG+Y + ++ G +S +++
Sbjct: 39 IVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKS--RLKLVDE 96
Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP----------RISWSKDEAEFVEDRNHK 186
L+++ A + + ++I +G L +++WS + + K
Sbjct: 97 AFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVK 156
Query: 187 IHRTGS---LRLYNIGPQDSGLY----------RCTASNLLGEDVAEGYLTVTGAPPIFI 233
TG L++ P D G Y +L G+ E Y I
Sbjct: 157 TGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAI 216
Query: 234 QR----------PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG- 282
P T G +TC V G P P+++W + +L SDDH + +
Sbjct: 217 AEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAG 276
Query: 283 --FVLVLNGVRESDAGVYNCVAQNSEGSAES 311
+NGV +D+G Y V +N GS S
Sbjct: 277 RTAYFTINGVSTADSGKYGLVVKNKYGSETS 307
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 52 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG---FVLVLNGVRE 108
P T G +TC V G P P+++W + +L SDDH + + +NGV
Sbjct: 229 PDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVST 288
Query: 109 SDAGVYNCVAQNSEGSAES 127
+D+G Y V +N GS S
Sbjct: 289 ADSGKYGLVVKNKYGSETS 307
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 60/294 (20%), Positives = 107/294 (36%), Gaps = 42/294 (14%)
Query: 155 SVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHR-TGSLRLYNIGPQDSGLYRCTASN 212
+V + CK + + I W KDE E D H +L + +D+G+Y +
Sbjct: 23 NVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKD 82
Query: 213 LLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLP----------QMT 262
G+D + L + ++ S + +I EG L ++
Sbjct: 83 DRGKDKSRLKLVDEAFKELMMEVCKKIALS-ATDLKIQSTAEGIQLYSFVTYYVEDLKVN 141
Query: 263 WFHDGNSLDSDDHVTYEHDG--FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING- 319
W H+G+++ D V G L +N +D G Y V + +G + ++G
Sbjct: 142 WSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKY--VMELFDGKTGHQKTVDLSGQ 199
Query: 320 --------------------HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD 359
+RA L P + G ++ + C G+P P +SW K+
Sbjct: 200 AYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKN 259
Query: 360 EAEFVEDRNHKIH----RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
E D + + RT + + DSG Y N G + ++ ++V
Sbjct: 260 EKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 313
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 48/253 (18%), Positives = 90/253 (35%), Gaps = 39/253 (15%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLV 69
L+I+ ++ G Y + + G + L + A + + + +I
Sbjct: 63 LLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTA 122
Query: 70 EGHPLP----------QMTWFHDGNSLDSDDHVTYEHDG--FVLVLNGVRESDAGVYNCV 117
EG L ++ W H+G+++ D V G L +N +D G Y V
Sbjct: 123 EGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKY--V 180
Query: 118 AQNSEGSAESVAMIRING---------------------HRAPRLVVKPFDMRAPAGSSV 156
+ +G + ++G +RA L P + G ++
Sbjct: 181 MELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKAL 240
Query: 157 EIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH----RTGSLRLYNIGPQDSGLYRCTASN 212
+ C G+P P +SW K+E D + + RT + + DSG Y N
Sbjct: 241 NLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKN 300
Query: 213 LLGEDVAEGYLTV 225
G + ++ ++V
Sbjct: 301 KYGSETSDFTVSV 313
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/126 (30%), Positives = 55/126 (43%), Gaps = 6/126 (4%)
Query: 52 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH----VTYEHDGFVLVLNGVR 107
PV T S G ++ C VEG P + W DG + + D V+ +H L L V
Sbjct: 9 PVKLTVSQGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVE 68
Query: 108 ESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPL 167
SDAG Y C ++ G E + + P V+P D+ P + ++ C+ G P
Sbjct: 69 RSDAGRYWCQVEDG-GETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPE 127
Query: 168 P-RISW 172
P I W
Sbjct: 128 PVTIVW 133
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/126 (30%), Positives = 55/126 (43%), Gaps = 6/126 (4%)
Query: 236 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH----VTYEHDGFVLVLNGVR 291
PV T S G ++ C VEG P + W DG + + D V+ +H L L V
Sbjct: 9 PVKLTVSQGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVE 68
Query: 292 ESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPL 351
SDAG Y C ++ G E + + P V+P D+ P + ++ C+ G P
Sbjct: 69 RSDAGRYWCQVEDG-GETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPE 127
Query: 352 P-RISW 356
P I W
Sbjct: 128 PVTIVW 133
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 44/180 (24%), Positives = 75/180 (41%), Gaps = 17/180 (9%)
Query: 140 RLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH------KIHRTGSL 193
+L+ P + G V++ C +G P I W KD A V++ + + H G L
Sbjct: 4 KLMGAPVKLTVSQGQPVKLNCSVEGXEEPDIQWVKDGA-VVQNLDQLYIPVSEQHWIGFL 62
Query: 194 RLYNIGPQDSGLYRCTASNLLGEDVAEG-YLTVTGAPPIFIQRPVSTTYSTGSTSRITCL 252
L ++ D+G Y C + ++++ +LTV G P F P + +++C
Sbjct: 63 SLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGV-PFFTVEPKDLAVPPNAPFQLSCE 121
Query: 253 VEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES 311
G P P + W+ + VL + GV +S ++C A N +G A S
Sbjct: 122 AVGPPEPVTIVWWRGTTKIGGP-----APSPSVLNVTGVTQSTX--FSCEAHNLKGLASS 174
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 227 GAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-- 284
G+PP F++ P +G+ + + C+V G P P + W G L + + +++ DG
Sbjct: 12 GSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHG 71
Query: 285 LVLNGVRESDAGVYNCVAQN 304
L+L +DAGVY C A+N
Sbjct: 72 LLLTAALPTDAGVYVCRARN 91
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 43 NAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-- 100
+PP F++ P +G+ + + C+V G P P + W G L + + +++ DG
Sbjct: 12 GSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHG 71
Query: 101 LVLNGVRESDAGVYNCVAQN 120
L+L +DAGVY C A+N
Sbjct: 72 LLLTAALPTDAGVYVCRARN 91
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 145 PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS---LRLYNIGPQ 201
P +R +G+ E+ C GEP P + W K + G+ L L P
Sbjct: 21 PRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPT 80
Query: 202 DSGLYRCTASN 212
D+G+Y C A N
Sbjct: 81 DAGVYVCRARN 91
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 329 PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS---LRLYNIGPQ 385
P +R +G+ E+ C GEP P + W K + G+ L L P
Sbjct: 21 PRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPT 80
Query: 386 DSGLYRCTASN 396
D+G+Y C A N
Sbjct: 81 DAGVYVCRARN 91
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 227 GAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-- 284
G+PP F++ P +G+ + + C+V G P P + W G L + + +++ DG
Sbjct: 11 GSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHG 70
Query: 285 LVLNGVRESDAGVYNCVAQN 304
L+L +DAGVY C A+N
Sbjct: 71 LLLTAALPTDAGVYVCRARN 90
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 43 NAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-- 100
+PP F++ P +G+ + + C+V G P P + W G L + + +++ DG
Sbjct: 11 GSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHG 70
Query: 101 LVLNGVRESDAGVYNCVAQN 120
L+L +DAGVY C A+N
Sbjct: 71 LLLTAALPTDAGVYVCRARN 90
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 145 PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS---LRLYNIGPQ 201
P +R +G+ E+ C GEP P + W K + G+ L L P
Sbjct: 20 PRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPT 79
Query: 202 DSGLYRCTASN 212
D+G+Y C A N
Sbjct: 80 DAGVYVCRARN 90
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 329 PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS---LRLYNIGPQ 385
P +R +G+ E+ C GEP P + W K + G+ L L P
Sbjct: 20 PRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPT 79
Query: 386 DSGLYRCTASN 396
D+G+Y C A N
Sbjct: 80 DAGVYVCRARN 90
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 47/105 (44%)
Query: 43 NAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLV 102
+ PP+ Q PV+ T + T ++C+ G P+P + W DG + + D + + VL
Sbjct: 6 SGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQ 65
Query: 103 LNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFD 147
+ + D G Y C+A G A A I + P +P D
Sbjct: 66 IRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTD 110
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%)
Query: 226 TGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVL 285
+ PP+ Q PV+ T + T ++C+ G P+P + W DG + + D + + VL
Sbjct: 5 SSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVL 64
Query: 286 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFD 331
+ + D G Y C+A G A A I + P +P D
Sbjct: 65 QIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTD 110
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 160 CKPDGEPLPRISWSKDEAEF-VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV 218
C G P+P I W KD +D K G L++ D+G Y C AS GE
Sbjct: 30 CVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGEAT 89
Query: 219 AEGYLTV 225
Y+ V
Sbjct: 90 WSAYIEV 96
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 344 CKPDGEPLPRISWSKDEAEF-VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV 402
C G P+P I W KD +D K G L++ D+G Y C AS GE
Sbjct: 30 CVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGEAT 89
Query: 403 AEGYLTV 409
Y+ V
Sbjct: 90 WSAYIEV 96
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 13/133 (9%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGD--LHVTVNAPPIFIQRPVSTTYSTGSTS 63
SS+ + S V R+ G Y+C+ G G+ +H+TV PP V ++ + G+ +
Sbjct: 63 SSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRA 122
Query: 64 RITCLV-EGHPLPQMTWFHDGNSL---DSDDHVTYEHDGFV-------LVLNGVRESDAG 112
+TC +G P + +WF DG S+ D+ + + F L+ + V D+G
Sbjct: 123 VLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSG 182
Query: 113 VYNCVAQNSEGSA 125
Y C AQN G+A
Sbjct: 183 EYYCQAQNGYGTA 195
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 83/192 (43%), Gaps = 35/192 (18%)
Query: 147 DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDR-------NHKI---------HRT 190
D++ P S+++ C G PR+ W +FV+ N +I +
Sbjct: 10 DVQVPENESIKLTCTYSGFSSPRVEW-----KFVQGSTTALVCYNSQITAPYADRVTFSS 64
Query: 191 GSLRLYNIGPQDSGLYRCTASNLLGEDVAEG--YLTVTGAPPIFIQRPVSTTYSTGSTSR 248
+ ++ +D+G Y C S G++ E +LTV PP V ++ + G+ +
Sbjct: 65 SGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVL-VPPSKPTISVPSSVTIGNRAV 123
Query: 249 ITCLV-EGHPLPQMTWFHDGNSL---DSDDHVTYEHDGFV-------LVLNGVRESDAGV 297
+TC +G P + +WF DG S+ D+ + + F L+ + V D+G
Sbjct: 124 LTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGE 183
Query: 298 YNCVAQNSEGSA 309
Y C AQN G+A
Sbjct: 184 YYCQAQNGYGTA 195
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 81/192 (42%), Gaps = 17/192 (8%)
Query: 51 RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-----LVLNG 105
R ++ Y + +T + C V GHP P + W+ G + +D + Y F L++
Sbjct: 12 RNLNVRYQSNAT--LVCKVTGHPKPIVKWYRQGKEIIADG-LKYRIQEFKGGYHQLIIAS 68
Query: 106 VRESDAGVYNCVAQNSEGSAESVAMIRIN---GHRAPRLVVKPFDMRAPAGSSVEIPCKP 162
V + DA VY A N GS A + + P+ + + A G V I
Sbjct: 69 VTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF 128
Query: 163 DGEPLPRISWSKDEAEFVEDRNHK---IHRTGSLRLY--NIGPQDSGLYRCTASNLLGED 217
G+P P I+W K + + +++ H + R+ + ++ + +D+G Y A N G D
Sbjct: 129 SGKPDPVITWQKGQ-DLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGID 187
Query: 218 VAEGYLTVTGAP 229
L V P
Sbjct: 188 QKTVELDVADVP 199
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 78/180 (43%), Gaps = 17/180 (9%)
Query: 235 RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-----LVLNG 289
R ++ Y + +T + C V GHP P + W+ G + +D + Y F L++
Sbjct: 12 RNLNVRYQSNAT--LVCKVTGHPKPIVKWYRQGKEIIADG-LKYRIQEFKGGYHQLIIAS 68
Query: 290 VRESDAGVYNCVAQNSEGSAESVAMIRIN---GHRAPRLVVKPFDMRAPAGSSVEIPCKP 346
V + DA VY A N GS A + + P+ + + A G V I
Sbjct: 69 VTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF 128
Query: 347 DGEPLPRISWSKDEAEFVEDRNHK---IHRTGSLRLY--NIGPQDSGLYRCTASNLLGED 401
G+P P I+W K + + +++ H + R+ + ++ + +D+G Y A N G D
Sbjct: 129 SGKPDPVITWQKGQ-DLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGID 187
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 71/186 (38%), Gaps = 14/186 (7%)
Query: 135 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED-RNHKIHRTG-- 191
G AP + ++ S+ + CK G P P + W + E + D ++I
Sbjct: 1 GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 192 --SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYST----GS 245
L + ++ D+ +Y+ A+N G L V I + + + + G
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGE 120
Query: 246 TSRITCLVEGHPLPQMTWFHDGNSLDSDDH----VTYEHDGFVLVLNGVRESDAGVYNCV 301
I G P P +TW + +D++ H VT V NGV DAG Y
Sbjct: 121 VVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVF-PNGVERKDAGFYVVC 179
Query: 302 AQNSEG 307
A+N G
Sbjct: 180 AKNRFG 185
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 47/124 (37%), Gaps = 10/124 (8%)
Query: 9 ELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAP-----PIFIQRPVSTTYSTGSTS 63
+L+I+ V + Y A N G G + V P P ++ + G
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVV 122
Query: 64 RITCLVEGHPLPQMTWFHDGNSLDSDDH----VTYEHDGFVLVLNGVRESDAGVYNCVAQ 119
I G P P +TW + +D++ H VT V NGV DAG Y A+
Sbjct: 123 SIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVF-PNGVERKDAGFYVVCAK 181
Query: 120 NSEG 123
N G
Sbjct: 182 NRFG 185
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 78/180 (43%), Gaps = 17/180 (9%)
Query: 51 RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-----LVLNG 105
R ++ Y + +T + C V GHP P + W+ G + +D + Y F L++
Sbjct: 10 RNLNVRYQSNAT--LVCKVTGHPKPIVKWYRQGKEIIADG-LKYRIQEFKGGYHQLIIAS 66
Query: 106 VRESDAGVYNCVAQNSEGSAESVAMIRIN---GHRAPRLVVKPFDMRAPAGSSVEIPCKP 162
V + DA VY A N GS A + + P+ + + A G V I
Sbjct: 67 VTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF 126
Query: 163 DGEPLPRISWSKDEAEFVEDRNHK---IHRTGSLRLY--NIGPQDSGLYRCTASNLLGED 217
G+P P I+W K + + +++ H + R+ + ++ + +D+G Y A N G D
Sbjct: 127 SGKPDPVITWQKGQ-DLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGID 185
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 78/180 (43%), Gaps = 17/180 (9%)
Query: 235 RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-----LVLNG 289
R ++ Y + +T + C V GHP P + W+ G + +D + Y F L++
Sbjct: 10 RNLNVRYQSNAT--LVCKVTGHPKPIVKWYRQGKEIIADG-LKYRIQEFKGGYHQLIIAS 66
Query: 290 VRESDAGVYNCVAQNSEGSAESVAMIRIN---GHRAPRLVVKPFDMRAPAGSSVEIPCKP 346
V + DA VY A N GS A + + P+ + + A G V I
Sbjct: 67 VTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF 126
Query: 347 DGEPLPRISWSKDEAEFVEDRNHK---IHRTGSLRLY--NIGPQDSGLYRCTASNLLGED 401
G+P P I+W K + + +++ H + R+ + ++ + +D+G Y A N G D
Sbjct: 127 SGKPDPVITWQKGQ-DLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGID 185
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 78/180 (43%), Gaps = 17/180 (9%)
Query: 51 RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-----LVLNG 105
R ++ Y + +T + C V GHP P + W+ G + +D + Y F L++
Sbjct: 12 RNLNVRYQSNAT--LVCKVTGHPKPIVKWYRQGKEIIADG-LKYRIQEFKGGYHQLIIAS 68
Query: 106 VRESDAGVYNCVAQNSEGSAESVAMIRIN---GHRAPRLVVKPFDMRAPAGSSVEIPCKP 162
V + DA VY A N GS A + + P+ + + A G V I
Sbjct: 69 VTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF 128
Query: 163 DGEPLPRISWSKDEAEFVEDRNHK---IHRTGSLRLY--NIGPQDSGLYRCTASNLLGED 217
G+P P I+W K + + +++ H + R+ + ++ + +D+G Y A N G D
Sbjct: 129 SGKPDPVITWQKGQ-DLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGID 187
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 78/180 (43%), Gaps = 17/180 (9%)
Query: 235 RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-----LVLNG 289
R ++ Y + +T + C V GHP P + W+ G + +D + Y F L++
Sbjct: 12 RNLNVRYQSNAT--LVCKVTGHPKPIVKWYRQGKEIIADG-LKYRIQEFKGGYHQLIIAS 68
Query: 290 VRESDAGVYNCVAQNSEGSAESVAMIRIN---GHRAPRLVVKPFDMRAPAGSSVEIPCKP 346
V + DA VY A N GS A + + P+ + + A G V I
Sbjct: 69 VTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF 128
Query: 347 DGEPLPRISWSKDEAEFVEDRNHK---IHRTGSLRLY--NIGPQDSGLYRCTASNLLGED 401
G+P P I+W K + + +++ H + R+ + ++ + +D+G Y A N G D
Sbjct: 129 SGKPDPVITWQKGQ-DLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGID 187
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 71/186 (38%), Gaps = 14/186 (7%)
Query: 135 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED-RNHKIHRTG-- 191
G AP + ++ S+ + CK G P P + W + E + D ++I
Sbjct: 1 GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 192 --SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYST----GS 245
L + ++ D+ +Y+ A+N G L V I + + + + G
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGE 120
Query: 246 TSRITCLVEGHPLPQMTWFHDGNSLDSDDH----VTYEHDGFVLVLNGVRESDAGVYNCV 301
I G P P +TW + +D++ H VT V NGV DAG Y
Sbjct: 121 VVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVF-PNGVERKDAGFYVVC 179
Query: 302 AQNSEG 307
A+N G
Sbjct: 180 AKNRFG 185
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 9/157 (5%)
Query: 58 STGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEHDGFV--LVLNGVRESDAGVY 114
S G + TC G P + W++ G + S V + +G L + DAG+Y
Sbjct: 15 SVGESKFFTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIY 73
Query: 115 NCVAQNSEG-SAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW- 172
C A +++G + E+ ++ I R VV P + + G E+ C+ P P +SW
Sbjct: 74 RCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQ--GEDAEVVCRVSSSPAPAVSWL 131
Query: 173 -SKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRC 208
+E + D + +L++ NI D G+YRC
Sbjct: 132 YHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRC 168
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 9/157 (5%)
Query: 242 STGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEHDGFV--LVLNGVRESDAGVY 298
S G + TC G P + W++ G + S V + +G L + DAG+Y
Sbjct: 15 SVGESKFFTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIY 73
Query: 299 NCVAQNSEG-SAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW- 356
C A +++G + E+ ++ I R VV P + + G E+ C+ P P +SW
Sbjct: 74 RCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQ--GEDAEVVCRVSSSPAPAVSWL 131
Query: 357 -SKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRC 392
+E + D + +L++ NI D G+YRC
Sbjct: 132 YHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRC 168
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 41/174 (23%), Positives = 72/174 (41%), Gaps = 31/174 (17%)
Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAE-FVEDRNHKIHRTG---SLRLYNIGPQDSGLYRC 208
G S C GEP I W + E + + + + G L +YN +D+G+YRC
Sbjct: 17 GESKFFTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRC 75
Query: 209 TASNLLGED-----VAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTW 263
A++ G+ V E Y +T F + + G + + C V P P ++W
Sbjct: 76 QATDAKGQTQEATVVLEIYQKLT-----FREVVSPQEFKQGEDAEVVCRVSSSPAPAVSW 130
Query: 264 FHDGNSLDSDDHVTYEHDGFVLV------LNGVRESDAGVYNCVAQNSEGSAES 311
+ +++ T + F ++ + + +SD G+Y C EG E+
Sbjct: 131 LY-----HNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRC-----EGRVEA 174
Score = 34.7 bits (78), Expect = 0.27, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 18/114 (15%)
Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAE-FVEDRNHKIHRTG---SLRLYNIGPQDSGLYRC 392
G S C GEP I W + E + + + + G L +YN +D+G+YRC
Sbjct: 17 GESKFFTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRC 75
Query: 393 TASNLLGED-----VAEGYLTVTGENSVEP--------APHTSREPSASKPSVA 433
A++ G+ V E Y +T V P A R S+ P+V+
Sbjct: 76 QATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVS 129
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 5/128 (3%)
Query: 218 VAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVT 277
+ + + + A P FI +P T G ++ C V P +TW D L
Sbjct: 365 IRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYM 424
Query: 278 YEHDG--FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFD--MR 333
++G + L +N V+ D G Y A+NS G+ E + + + H P L +P + +
Sbjct: 425 KRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSEP-LKFEPLEPMKK 483
Query: 334 APAGSSVE 341
AP+ VE
Sbjct: 484 APSPPRVE 491
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Query: 44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG--FVL 101
A P FI +P T G ++ C V P +TW D L ++G + L
Sbjct: 375 AQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGL 434
Query: 102 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFD--MRAPAGSSVE 157
+N V+ D G Y A+NS G+ E + + + H P L +P + +AP+ VE
Sbjct: 435 TINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSEP-LKFEPLEPMKKAPSPPRVE 491
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 43/112 (38%), Gaps = 5/112 (4%)
Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS---LRL 379
PR +VKP+ G S C+ P ++W KD+ E + + G+ L +
Sbjct: 377 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 436
Query: 380 YNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPS 431
+ D G Y A N G +L VT + EP EP PS
Sbjct: 437 NRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHS--EPLKFEPLEPMKKAPS 486
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS---LRL 195
PR +VKP+ G S C+ P ++W KD+ E + + G+ L +
Sbjct: 377 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 436
Query: 196 YNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 226
+ D G Y A N G +L VT
Sbjct: 437 NRVKGDDKGEYTVRAKNSYGTKEEIVFLNVT 467
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 44/191 (23%), Positives = 71/191 (37%), Gaps = 22/191 (11%)
Query: 60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 116
+T + C G+P P W +G + + + + L+ V SD G Y C
Sbjct: 26 ANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTC 85
Query: 117 VAQNSEGSAESVAMIRINGHRAPRLVVK---PFDMRAPAGSSVEIPCKPDGEPLPRISW- 172
V +N GS + + R +++ P + G VE CK + P I W
Sbjct: 86 VVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 145
Query: 173 ---SKDEAEFVEDR------------NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 217
K+ +++ D N L + N+ +D+G Y C A N +G
Sbjct: 146 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205
Query: 218 VAEGYLTVTGA 228
+LTV A
Sbjct: 206 FHSAWLTVLPA 216
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 43/188 (22%), Positives = 70/188 (37%), Gaps = 22/188 (11%)
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 300
+T + C G+P P W +G + + + + L+ V SD G Y C
Sbjct: 26 ANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTC 85
Query: 301 VAQNSEGSAESVAMIRINGHRAPRLVVK---PFDMRAPAGSSVEIPCKPDGEPLPRISW- 356
V +N GS + + R +++ P + G VE CK + P I W
Sbjct: 86 VVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 145
Query: 357 ---SKDEAEFVEDR------------NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 401
K+ +++ D N L + N+ +D+G Y C A N +G
Sbjct: 146 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205
Query: 402 VAEGYLTV 409
+LTV
Sbjct: 206 FHSAWLTV 213
Score = 49.3 bits (116), Expect = 9e-06, Method: Composition-based stats.
Identities = 47/185 (25%), Positives = 66/185 (35%), Gaps = 33/185 (17%)
Query: 151 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN---------IGPQ 201
PA ++V+ C G P P W K+ EF ++ HR G ++ N + P
Sbjct: 24 PAANTVKFRCPAGGNPXPTXRWLKNGKEFKQE-----HRIGGYKVRNQHWSLIXESVVPS 78
Query: 202 DSGLYRCTASNLLGEDVAEGYLTVTGAPP----IFIQRPVSTTYSTGSTSRITCLVEGHP 257
D G Y C N G +L V P + P + + G C V
Sbjct: 79 DKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDA 138
Query: 258 LPQMTWFH-----------DG----NSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVA 302
P + W DG L + T + + VL + V DAG Y C+A
Sbjct: 139 QPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLA 198
Query: 303 QNSEG 307
NS G
Sbjct: 199 GNSIG 203
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 19/95 (20%)
Query: 335 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN---------IGPQ 385
PA ++V+ C G P P W K+ EF ++ HR G ++ N + P
Sbjct: 24 PAANTVKFRCPAGGNPXPTXRWLKNGKEFKQE-----HRIGGYKVRNQHWSLIXESVVPS 78
Query: 386 DSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPH 420
D G Y C N G +L V VE +PH
Sbjct: 79 DKGNYTCVVENEYGSINHTYHLDV-----VERSPH 108
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 47/140 (33%), Gaps = 20/140 (14%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV-----NAPPIFIQRPVSTTYS 58
R L+ V G Y+CV N G H+ V + P + P + +
Sbjct: 64 RNQHWSLIXESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTV 123
Query: 59 TGSTSRITCLVEGHPLPQMTWFH-----------DG----NSLDSDDHVTYEHDGFVLVL 103
G C V P + W DG L + T + + VL +
Sbjct: 124 VGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYI 183
Query: 104 NGVRESDAGVYNCVAQNSEG 123
V DAG Y C+A NS G
Sbjct: 184 RNVTFEDAGEYTCLAGNSIG 203
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 84/193 (43%), Gaps = 22/193 (11%)
Query: 147 DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVE--DRNHKIHRT---------GSLRL 195
++R P + V++ C G PR+ W D+ + N+KI + +
Sbjct: 13 EVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITF 72
Query: 196 YNIGPQDSGLYRCTASNLLGEDVAEGYLT-VTGAPPIFIQRPVSTTYSTGSTSRITCLVE 254
++ +D+G Y C S G E + + PP + ++ + G+ + +TC +
Sbjct: 73 KSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQ 132
Query: 255 -GHPLPQMTWFHDGNSLDSDDHVT--YEHDGFV-------LVLNGVRESDAGVYNCVAQN 304
G P + TWF DG + ++ T + + +V LV + + SD G Y+C A+N
Sbjct: 133 DGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARN 192
Query: 305 SEGSAESVAMIRI 317
G+ + +R+
Sbjct: 193 GYGTPMTSNAVRM 205
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 12/138 (8%)
Query: 8 TELVISGVQREHGGRYSCVAGNPAGVYRGDLHVT--VNAPPIFIQRPVSTTYSTGSTSRI 65
T + V RE G Y+C+ G G++ V V PP + ++ + G+ + +
Sbjct: 68 TGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVL 127
Query: 66 TCLVE-GHPLPQMTWFHDGNSLDSDDHVT--YEHDGFVL-------VLNGVRESDAGVYN 115
TC + G P + TWF DG + ++ T + + +VL V + + SD G Y+
Sbjct: 128 TCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYS 187
Query: 116 CVAQNSEGSAESVAMIRI 133
C A+N G+ + +R+
Sbjct: 188 CEARNGYGTPMTSNAVRM 205
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 62/177 (35%), Gaps = 29/177 (16%)
Query: 248 RITCLVEGHPLPQMTW------------FHDGNSLDSDDHVTYEHDGFVLVLNGVRESDA 295
+++C G P++ W +++ + +D VT+ G + V D
Sbjct: 23 KLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTG--ITFKSVTREDT 80
Query: 296 GVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC-KPDGEPLPRI 354
G Y C+ G++ +++ P A G+ + C + DG P
Sbjct: 81 GTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEY 140
Query: 355 SWSKDEAEFVEDRNHKIHR------------TGSLRLYNIGPQDSGLYRCTASNLLG 399
+W KD V N K R TG L + D+G Y C A N G
Sbjct: 141 TWFKDG--IVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYG 195
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 39/80 (48%)
Query: 56 TYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYN 115
T S G + ++C G+P PQ+ WF D +L D + + L + VR+ D G+Y
Sbjct: 21 TTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYT 80
Query: 116 CVAQNSEGSAESVAMIRING 135
C A + G A+ A I G
Sbjct: 81 CQACSVLGCAKVEAFFIIEG 100
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 39/80 (48%)
Query: 240 TYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYN 299
T S G + ++C G+P PQ+ WF D +L D + + L + VR+ D G+Y
Sbjct: 21 TTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYT 80
Query: 300 CVAQNSEGSAESVAMIRING 319
C A + G A+ A I G
Sbjct: 81 CQACSVLGCAKVEAFFIIEG 100
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG-SLRLYNIGPQDSGLYRCTAS 211
G S+E+ C G P P+I W KD VED + +L + + +D GLY C A
Sbjct: 25 GESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQAC 84
Query: 212 NLLGEDVAEGYLTVTGA 228
++LG E + + GA
Sbjct: 85 SVLGCAKVEAFFIIEGA 101
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG-SLRLYNIGPQDSGLYRCTAS 395
G S+E+ C G P P+I W KD VED + +L + + +D GLY C A
Sbjct: 25 GESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQAC 84
Query: 396 NLLGEDVAEGYLTVTG 411
++LG E + + G
Sbjct: 85 SVLGCAKVEAFFIIEG 100
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 226 TGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL--DSDDHVTYEHDGF 283
+G P F+Q P T G R+ C V G P P ++W DG + DS + +G
Sbjct: 6 SGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGV 65
Query: 284 -VLVLNGVRESDAGVYNCVAQNSEG 307
L++ V DAG+Y C+A N G
Sbjct: 66 HSLIIEPVTSRDAGIYTCIATNRAG 90
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL--DSDDHVTYEHDGF-VLV 102
P F+Q P T G R+ C V G P P ++W DG + DS + +G L+
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLI 69
Query: 103 LNGVRESDAGVYNCVAQNSEG 123
+ V DAG+Y C+A N G
Sbjct: 70 IEPVTSRDAGIYTCIATNRAG 90
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI----HRTGSLR 378
P + P D+ G + CK G P P +SW D D HK+ + SL
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLI 69
Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENS 414
+ + +D+G+Y C A+N G++ L V + S
Sbjct: 70 IEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKES 105
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI----HRTGSLR 194
P + P D+ G + CK G P P +SW D D HK+ + SL
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLI 69
Query: 195 LYNIGPQDSGLYRCTASNLLGED 217
+ + +D+G+Y C A+N G++
Sbjct: 70 IEPVTSRDAGIYTCIATNRAGQN 92
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 49 IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSD--DHVTYEHDGFVLVLNGV 106
+ +P S T G ++R +C +G P+P +TW G L + VT ++ V
Sbjct: 18 LTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSV 77
Query: 107 RESDAGVYNCVAQNSEGSAES 127
+ SD G Y+ V +NSEG E+
Sbjct: 78 QASDEGNYSVVVENSEGKQEA 98
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 233 IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSD--DHVTYEHDGFVLVLNGV 290
+ +P S T G ++R +C +G P+P +TW G L + VT ++ V
Sbjct: 18 LTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSV 77
Query: 291 RESDAGVYNCVAQNSEGSAES 311
+ SD G Y+ V +NSEG E+
Sbjct: 78 QASDEGNYSVVVENSEGKQEA 98
Score = 46.2 bits (108), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT---GSLR 194
A R++ KP M G S C DGEP+P ++W + H++ T +
Sbjct: 14 AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 73
Query: 195 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
+ ++ D G Y N G+ AE LT+
Sbjct: 74 ISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
Score = 46.2 bits (108), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT---GSLR 378
A R++ KP M G S C DGEP+P ++W + H++ T +
Sbjct: 14 AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 73
Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
+ ++ D G Y N G+ AE LT+
Sbjct: 74 ISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 49 IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSD--DHVTYEHDGFVLVLNGV 106
+ +P S T G ++R +C +G P+P +TW G L + VT ++ V
Sbjct: 12 LTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSV 71
Query: 107 RESDAGVYNCVAQNSEGSAES 127
+ SD G Y+ V +NSEG E+
Sbjct: 72 QASDEGNYSVVVENSEGKQEA 92
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 233 IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSD--DHVTYEHDGFVLVLNGV 290
+ +P S T G ++R +C +G P+P +TW G L + VT ++ V
Sbjct: 12 LTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSV 71
Query: 291 RESDAGVYNCVAQNSEGSAES 311
+ SD G Y+ V +NSEG E+
Sbjct: 72 QASDEGNYSVVVENSEGKQEA 92
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT---GSLR 194
+ R++ KP M G S C DGEP+P ++W + H++ T +
Sbjct: 8 SSRILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 67
Query: 195 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
+ ++ D G Y N G+ AE LT+
Sbjct: 68 ISSVQASDEGNYSVVVENSEGKQEAEFTLTI 98
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT---GSLR 378
+ R++ KP M G S C DGEP+P ++W + H++ T +
Sbjct: 8 SSRILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 67
Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
+ ++ D G Y N G+ AE LT+
Sbjct: 68 ISSVQASDEGNYSVVVENSEGKQEAEFTLTI 98
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 42 VNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD--GF 99
+++ P+ + TT S+ S ++ G P P W DG ++ D GF
Sbjct: 3 ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGF 62
Query: 100 VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
L ++ SD+G+Y C +NS GS S + I
Sbjct: 63 FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD--GFVL 285
+ P+ + TT S+ S ++ G P P W DG ++ D GF L
Sbjct: 5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFL 64
Query: 286 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
++ SD+G+Y C +NS GS S + I
Sbjct: 65 EIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS---LRL 195
P +V D + S + K GEP P W+KD + +K+ L +
Sbjct: 7 PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEI 66
Query: 196 YNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
+ DSGLY CT N G + LT+
Sbjct: 67 HKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS---LRL 379
P +V D + S + K GEP P W+KD + +K+ L +
Sbjct: 7 PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEI 66
Query: 380 YNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
+ DSGLY CT N G + LT+
Sbjct: 67 HKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 65/176 (36%), Gaps = 29/176 (16%)
Query: 52 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDA 111
P S G ++ C GHP Q WF + + + T E L+ N V DA
Sbjct: 25 PESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN--TSE-----LIFNAVHVKDA 77
Query: 112 GVYNCVAQN------SEGSAESVAMIRINGHRAP--------RLVVKPFDMRAPAGSSVE 157
G Y C N S+ S V I + R+ ++ V+P + GS++
Sbjct: 78 GFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLV 137
Query: 158 IPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLY-NIGPQDSGLYRCTASN 212
+ C G P+P W K+E H T L + + + G Y C N
Sbjct: 138 LQCVAVGSPIPHYQWFKNELPLT-------HETKKLYMVPYVDLEHQGTYWCHVYN 186
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 65/176 (36%), Gaps = 29/176 (16%)
Query: 236 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDA 295
P S G ++ C GHP Q WF + + + T E L+ N V DA
Sbjct: 25 PESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN--TSE-----LIFNAVHVKDA 77
Query: 296 GVYNCVAQN------SEGSAESVAMIRINGHRAP--------RLVVKPFDMRAPAGSSVE 341
G Y C N S+ S V I + R+ ++ V+P + GS++
Sbjct: 78 GFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLV 137
Query: 342 IPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLY-NIGPQDSGLYRCTASN 396
+ C G P+P W K+E H T L + + + G Y C N
Sbjct: 138 LQCVAVGSPIPHYQWFKNELPLT-------HETKKLYMVPYVDLEHQGTYWCHVYN 186
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 60/169 (35%), Gaps = 30/169 (17%)
Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLY 196
R ++ V P AG V++ C+ G P + W K E T L
Sbjct: 17 RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG------NTSELIFN 70
Query: 197 NIGPQDSGLYRCTASNLLGEDVAE-GYLTVTGAPPIFIQR---------------PVSTT 240
+ +D+G Y C +N + ++ L V P F QR P S
Sbjct: 71 AVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESF-QRSVDGVSESKLQICVEPTSQK 129
Query: 241 YSTGSTSRITCLVEGHPLPQMTWF-------HDGNSLDSDDHVTYEHDG 282
GST + C+ G P+P WF H+ L +V EH G
Sbjct: 130 LMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQG 178
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 6/76 (7%)
Query: 321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLY 380
R ++ V P AG V++ C+ G P + W K E T L
Sbjct: 17 RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG------NTSELIFN 70
Query: 381 NIGPQDSGLYRCTASN 396
+ +D+G Y C +N
Sbjct: 71 AVHVKDAGFYVCRVNN 86
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 13/137 (9%)
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPF---------DMRAP 151
L + V SD G Y+C +S +SV I P KP+ D+ A
Sbjct: 68 LYIANVEASDKGNYSCFV-SSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYAL 126
Query: 152 AGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS-LRLYNIGPQDSGLYRCTA 210
G +V + C G P+P I W K +I +G+ L+++NI +D G+Y C A
Sbjct: 127 MGQNVTLECFALGNPVPDIRWRKVLEPM--PSTAEISTSGAVLKIFNIQLEDEGIYECEA 184
Query: 211 SNLLGEDVAEGYLTVTG 227
N+ G+D + + V
Sbjct: 185 ENIRGKDKHQARIYVQA 201
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 13/137 (9%)
Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPF---------DMRAP 335
L + V SD G Y+C +S +SV I P KP+ D+ A
Sbjct: 68 LYIANVEASDKGNYSCFV-SSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYAL 126
Query: 336 AGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS-LRLYNIGPQDSGLYRCTA 394
G +V + C G P+P I W K +I +G+ L+++NI +D G+Y C A
Sbjct: 127 MGQNVTLECFALGNPVPDIRWRKVLEPM--PSTAEISTSGAVLKIFNIQLEDEGIYECEA 184
Query: 395 SNLLGEDVAEGYLTVTG 411
N+ G+D + + V
Sbjct: 185 ENIRGKDKHQARIYVQA 201
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 17/156 (10%)
Query: 173 SKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN-LLGEDVAEGYLTVTGAP-- 229
+ D+ FV N G+L + N+ D G Y C S+ + + V ++ + P
Sbjct: 54 TMDKRRFVSQTN------GNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPER 107
Query: 230 -----PIFIQRPVSTTYS-TGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF 283
P I Y+ G + C G+P+P + W + S ++ G
Sbjct: 108 TTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEIS--TSGA 165
Query: 284 VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 319
VL + ++ D G+Y C A+N G + A I +
Sbjct: 166 VLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQA 201
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 59/148 (39%), Gaps = 16/148 (10%)
Query: 2 DDRRSSTE----LVISGVQREHGGRYSCVAGNPA---GVYRGDLHV------TVNAPPIF 48
D RR ++ L I+ V+ G YSC +P+ V+ + + T P
Sbjct: 56 DKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPAD 115
Query: 49 IQRPVSTTYS-TGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVR 107
I Y+ G + C G+P+P + W + S ++ G VL + ++
Sbjct: 116 IVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEIS--TSGAVLKIFNIQ 173
Query: 108 ESDAGVYNCVAQNSEGSAESVAMIRING 135
D G+Y C A+N G + A I +
Sbjct: 174 LEDEGIYECEAENIRGKDKHQARIYVQA 201
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT----GSL 193
AP +V P D+ G + E+ C+ L +SW + +K+ G+L
Sbjct: 341 APVIVEPPADLNVTEGMAAELKCRASTS-LTSVSWITPNGTVMTHGAYKVRIAVLSDGTL 399
Query: 194 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGA 228
N+ QD+G+Y C SN +G A L VTG
Sbjct: 400 NFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGT 434
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT----GSL 377
AP +V P D+ G + E+ C+ L +SW + +K+ G+L
Sbjct: 341 APVIVEPPADLNVTEGMAAELKCRASTS-LTSVSWITPNGTVMTHGAYKVRIAVLSDGTL 399
Query: 378 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
N+ QD+G+Y C SN +G A L VTG
Sbjct: 400 NFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTG 433
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 16/123 (13%)
Query: 207 RC-TASNLLGEDVAE---GYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMT 262
RC T NL G + E Y T P+ ++ P + G + + C L ++
Sbjct: 317 RCNTPPNLKGRYIGELDQNYFTCYA--PVIVEPPADLNVTEGMAAELKCRAST-SLTSVS 373
Query: 263 WFHDGNSLDSDDHVTYE------HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR 316
W ++ + H Y+ DG L V D G+Y C+ NS G+ + A +
Sbjct: 374 WITPNGTVMT--HGAYKVRIAVLSDG-TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLN 430
Query: 317 ING 319
+ G
Sbjct: 431 VTG 433
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 14/116 (12%)
Query: 29 NPAGVYRGDL---HVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNS 85
N G Y G+L + T AP + ++ P + G + + C L ++W +
Sbjct: 323 NLKGRYIGELDQNYFTCYAP-VIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGT 380
Query: 86 LDSDDHVTYE------HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 135
+ + H Y+ DG L V D G+Y C+ NS G+ + A + + G
Sbjct: 381 VMT--HGAYKVRIAVLSDG-TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTG 433
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/101 (33%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 216 EDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH 275
E+VAE V P F + + GS +R C VEG+P P++ WF D N + H
Sbjct: 31 EEVAEEKPHVK---PYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRH 87
Query: 276 --VTYEHDGFV-LVLNGVRESDAGVYNCVAQNSEGSAESVA 313
+ Y+ +G L ++ V D Y C A NS G A A
Sbjct: 88 FQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTA 128
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH--VTYEHDGFV-LV 102
P F + + GS +R C VEG+P P++ WF D N + H + Y+ +G L
Sbjct: 42 PYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLT 101
Query: 103 LNGVRESDAGVYNCVAQNSEGSAESVA 129
++ V D Y C A NS G A A
Sbjct: 102 ISEVCGDDDAKYTCKAVNSLGEATCTA 128
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 44/111 (39%), Gaps = 6/111 (5%)
Query: 119 QNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAE 178
+N + E VA + H P DM GS+ CK +G P P + W KD+
Sbjct: 24 ENEDAFLEEVAEEK--PHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNP 81
Query: 179 FVEDRNHKI----HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
E R+ +I SL + + D Y C A N LGE L V
Sbjct: 82 VKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 44/111 (39%), Gaps = 6/111 (5%)
Query: 303 QNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAE 362
+N + E VA + H P DM GS+ CK +G P P + W KD+
Sbjct: 24 ENEDAFLEEVAEEK--PHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNP 81
Query: 363 FVEDRNHKI----HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
E R+ +I SL + + D Y C A N LGE L V
Sbjct: 82 VKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/101 (33%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 216 EDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH 275
E+VAE V P F + + GS +R C VEG+P P++ WF D N + H
Sbjct: 31 EEVAEEKPHVK---PYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRH 87
Query: 276 --VTYEHDGFV-LVLNGVRESDAGVYNCVAQNSEGSAESVA 313
+ Y+ +G L ++ V D Y C A NS G A A
Sbjct: 88 FQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTA 128
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH--VTYEHDGFV-LV 102
P F + + GS +R C VEG+P P++ WF D N + H + Y+ +G L
Sbjct: 42 PYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLT 101
Query: 103 LNGVRESDAGVYNCVAQNSEGSAESVA 129
++ V D Y C A NS G A A
Sbjct: 102 ISEVCGDDDAKYTCKAVNSLGEATCTA 128
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 44/111 (39%), Gaps = 6/111 (5%)
Query: 119 QNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAE 178
+N + E VA + H P DM GS+ CK +G P P + W KD+
Sbjct: 24 ENEDAFLEEVAEEK--PHVKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNP 81
Query: 179 FVEDRNHKI----HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
E R+ +I SL + + D Y C A N LGE L V
Sbjct: 82 VKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 44/111 (39%), Gaps = 6/111 (5%)
Query: 303 QNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAE 362
+N + E VA + H P DM GS+ CK +G P P + W KD+
Sbjct: 24 ENEDAFLEEVAEEK--PHVKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNP 81
Query: 363 FVEDRNHKI----HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
E R+ +I SL + + D Y C A N LGE L V
Sbjct: 82 VKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132
>pdb|3O4O|C Chain C, Crystal Structure Of An Interleukin-1 Receptor Complex
Length = 339
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 101/258 (39%), Gaps = 31/258 (12%)
Query: 123 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRI--SWSK-DEAEF 179
G+A S + R RL +P +R P ++P PRI +W K D A
Sbjct: 13 GAARSCRFRGRHYKREFRLEGEPVALRCP-----QVPYWLWASVSPRINLTWHKNDSART 67
Query: 180 V--EDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV---TGAPPIFIQ 234
V E+ + G+L L +DSG Y CT N D L V T A FI
Sbjct: 68 VPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFIS 127
Query: 235 RPVSTTYSTGSTSRITC-----LVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-LVLN 288
P T ST + C ++ W+ D LD D+ G L+++
Sbjct: 128 YPQILTLSTSGV--LVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVH 185
Query: 289 GVRESDAGVYNCVAQNS-EGSAESVAM---IRINGHRAPRL--VVKPFD-MRAPAGSSVE 341
V DAG Y CV + EG ++ +RI + + ++ P + A GS +
Sbjct: 186 DVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLT 245
Query: 342 IPCKP---DGEPLPRISW 356
IPCK G PL + W
Sbjct: 246 IPCKVFLGTGTPLTTMLW 263
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 69/176 (39%), Gaps = 22/176 (12%)
Query: 17 REHGGRYSCVAGNPAGVYRGDLHVTV----NAPPIFIQRPVSTTYSTGSTSRITC----- 67
+E G Y C N + + + + V +A FI P T ST + C
Sbjct: 90 QEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGV--LVCPDLSE 147
Query: 68 LVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-LVLNGVRESDAGVYNCVAQNS-EGSA 125
++ W+ D LD D+ G L+++ V DAG Y CV + EG
Sbjct: 148 FTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQ 207
Query: 126 ESVAM---IRINGHRAPRL--VVKPFD-MRAPAGSSVEIPCKP---DGEPLPRISW 172
++ +RI + + ++ P + A GS + IPCK G PL + W
Sbjct: 208 YNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLW 263
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 63/151 (41%), Gaps = 15/151 (9%)
Query: 257 PLPQMTWFHDGNSLDS----DDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESV 312
P +TW H +S + ++ + DG + +L ++E D+G Y C +N+ +
Sbjct: 53 PRINLTW-HKNDSARTVPGEEETRMWAQDGALWLLPALQE-DSGTYVCTTRNASYCDKMS 110
Query: 313 AMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPR------ISWSKDEAEFVED 366
+R+ + L + +S + C PD R I W KD +D
Sbjct: 111 IELRVFENTDAFLPFISYPQILTLSTSGVLVC-PDLSEFTRDKTDVKIQWYKDSLLLDKD 169
Query: 367 RNHKIHRTGS--LRLYNIGPQDSGLYRCTAS 395
+ G+ L ++++ +D+G YRC +
Sbjct: 170 NEKFLSVRGTTHLLVHDVALEDAGYYRCVLT 200
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
Query: 221 GYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH 280
G L PP ++ P S G + + C EG P P + W+ G +++D H
Sbjct: 1 GSLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSH 60
Query: 281 DG--------FVLVLNGVRES-DAGVYNCVAQNSEGSAES 311
F+ +++G + D GVY CVA+N G A S
Sbjct: 61 RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVS 100
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG------ 98
PP ++ P S G + + C EG P P + W+ G +++D H
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 99 --FVLVLNGVRES-DAGVYNCVAQNSEGSAES 127
F+ +++G + D GVY CVA+N G A S
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVS 100
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH-KIHR----TGSL 193
PR+V P D+ G + CK +G P P I W K D++ + HR +GSL
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 194 RLYNI-----GPQDSGLYRCTASNLLGEDVA 219
I D G+Y C A N LGE V+
Sbjct: 70 FFLRIVHGRKSRPDEGVYVCVARNYLGEAVS 100
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH-KIHR----TGSL 377
PR+V P D+ G + CK +G P P I W K D++ + HR +GSL
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 378 RLYNI-----GPQDSGLYRCTASNLLGEDVA 403
I D G+Y C A N LGE V+
Sbjct: 70 FFLRIVHGRKSRPDEGVYVCVARNYLGEAVS 100
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 2/102 (1%)
Query: 218 VAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVT 277
+ + + + A P FI +P T G ++ C V P +TW D L
Sbjct: 471 IRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYM 530
Query: 278 YEHDG--FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
++G + L +N V+ D G Y A+NS G+ E + + +
Sbjct: 531 KRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG--FVL 101
A P FI +P T G ++ C V P +TW D L ++G + L
Sbjct: 481 AQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGL 540
Query: 102 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
+N V+ D G Y A+NS G+ E + + +
Sbjct: 541 TINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS---LRL 195
PR +VKP+ G S C+ P ++W KD+ E + + G+ L +
Sbjct: 483 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 542
Query: 196 YNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 226
+ D G Y A N G +L VT
Sbjct: 543 NRVKGDDKGEYTVRAKNSYGTKEEIVFLNVT 573
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS---LRL 379
PR +VKP+ G S C+ P ++W KD+ E + + G+ L +
Sbjct: 483 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 542
Query: 380 YNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
+ D G Y A N G +L VT
Sbjct: 543 NRVKGDDKGEYTVRAKNSYGTKEEIVFLNVT 573
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 52 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG---FVLVLNGVRE 108
P T G +TC V G P P+++W + +L DH + + +NGV
Sbjct: 124 PDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVST 183
Query: 109 SDAGVYNCVAQNSEGSAES 127
+D+G Y V +N GS S
Sbjct: 184 ADSGKYGLVVKNKYGSETS 202
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 236 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG---FVLVLNGVRE 292
P T G +TC V G P P+++W + +L DH + + +NGV
Sbjct: 124 PDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVST 183
Query: 293 SDAGVYNCVAQNSEGSAES 311
+D+G Y V +N GS S
Sbjct: 184 ADSGKYGLVVKNKYGSETS 202
Score = 34.3 bits (77), Expect = 0.35, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH----RTGSLRLYNIGPQDSGLYRC 208
G ++ + C G+P P +SW K+E + + + RT + + DSG Y
Sbjct: 132 GKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGL 191
Query: 209 TASNLLGEDVAEGYLTV 225
N G + ++ ++V
Sbjct: 192 VVKNKYGSETSDFTVSV 208
Score = 34.3 bits (77), Expect = 0.35, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH----RTGSLRLYNIGPQDSGLYRC 392
G ++ + C G+P P +SW K+E + + + RT + + DSG Y
Sbjct: 132 GKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGL 191
Query: 393 TASNLLGEDVAEGYLTV 409
N G + ++ ++V
Sbjct: 192 VVKNKYGSETSDFTVSV 208
>pdb|2X7L|L Chain L, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
pdb|2X7L|B Chain B, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
pdb|2X7L|D Chain D, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
pdb|2X7L|K Chain K, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
pdb|2X7L|F Chain F, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
pdb|2X7L|I Chain I, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
Length = 217
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 6 SSTE--LVISGVQREHGGRYSCVAGNPAGVYR------GDLHV--TVNAPPIFIQRPVST 55
S TE L ISGVQRE Y C+ G PA YR +L + TV AP +FI P
Sbjct: 67 SGTEYTLTISGVQREDAATYYCLGGYPAASYRTAFGGGTELEIIRTVAAPSVFIFPPSDE 126
Query: 56 TYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDS 88
+G+ S + L +P + N+L S
Sbjct: 127 QLKSGTASVVCLLNNFYPREAKVQWKVDNALQS 159
>pdb|3F9P|A Chain A, Crystal Structure Of Myeloperoxidase From Human Leukocytes
pdb|3F9P|B Chain B, Crystal Structure Of Myeloperoxidase From Human Leukocytes
pdb|3ZS1|A Chain A, Human Myeloperoxidase Inactivated By Tx5
pdb|3ZS1|B Chain B, Human Myeloperoxidase Inactivated By Tx5
Length = 114
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 24/39 (61%)
Query: 668 KYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTP 706
KYRTI G CNN + P GAS F R L YE+GFS P
Sbjct: 8 KYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLP 46
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 19/27 (70%)
Query: 874 PTTSITPDPVITHMVMQWGQFLDHDLD 900
PT +TPD + M MQWGQ LDHDLD
Sbjct: 74 PTDQLTPDQERSLMFMQWGQLLDHDLD 100
>pdb|1MYP|A Chain A, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3
Angstroms Resolution
pdb|1MYP|B Chain B, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3
Angstroms Resolution
pdb|1MHL|A Chain A, Crystal Structure Of Human Myeloperoxidase Isoform C
Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
pdb|1MHL|B Chain B, Crystal Structure Of Human Myeloperoxidase Isoform C
Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
pdb|3ZS0|A Chain A, Human Myeloperoxidase Inactivated By Tx2
pdb|3ZS0|B Chain B, Human Myeloperoxidase Inactivated By Tx2
Length = 108
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 24/39 (61%)
Query: 668 KYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTP 706
KYRTI G CNN + P GAS F R L YE+GFS P
Sbjct: 8 KYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLP 46
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 19/27 (70%)
Query: 874 PTTSITPDPVITHMVMQWGQFLDHDLD 900
PT +TPD + M MQWGQ LDHDLD
Sbjct: 74 PTDQLTPDQERSLMFMQWGQLLDHDLD 100
>pdb|1CXP|A Chain A, Cryogenic Crystal Structure Of Human Myeloperoxidase
Isoform C
pdb|1CXP|B Chain B, Cryogenic Crystal Structure Of Human Myeloperoxidase
Isoform C
pdb|1D2V|A Chain A, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D2V|B Chain B, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D7W|A Chain A, Crystal Structure Of Human Myeloperoxidase Isoform C
Complexed With Cyanide And Bromide At Ph 4.0
pdb|1D7W|B Chain B, Crystal Structure Of Human Myeloperoxidase Isoform C
Complexed With Cyanide And Bromide At Ph 4.0
pdb|1D5L|A Chain A, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D5L|B Chain B, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1DNU|A Chain A, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
Complex
pdb|1DNU|B Chain B, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
Complex
pdb|1DNW|A Chain A, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
pdb|1DNW|B Chain B, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
pdb|4DL1|A Chain A, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|B Chain B, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|E Chain E, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|F Chain F, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|I Chain I, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|J Chain J, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|M Chain M, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|N Chain N, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
Length = 104
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 24/39 (61%)
Query: 668 KYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTP 706
KYRTI G CNN + P GAS F R L YE+GFS P
Sbjct: 6 KYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLP 44
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 19/27 (70%)
Query: 874 PTTSITPDPVITHMVMQWGQFLDHDLD 900
PT +TPD + M MQWGQ LDHDLD
Sbjct: 72 PTDQLTPDQERSLMFMQWGQLLDHDLD 98
>pdb|2OCW|A Chain A, Solution Structure Of Human Secretory Component
pdb|3CHN|S Chain S, Solution Structure Of Human Secretory Iga1
pdb|3CM9|S Chain S, Solution Structure Of Human Siga2
Length = 585
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 75/183 (40%), Gaps = 28/183 (15%)
Query: 3 DRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGD----LHVTVNAPPIFIQRPVSTTYS 58
D+ S +VI+G+++E GRY C A + + G + VN + P
Sbjct: 285 DKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGV 344
Query: 59 TGSTSRITCLVEGHPLPQMTWF------HDGNS---LDSDDHVTYEHDG----------- 98
GS+ + C + ++ +G +DS+ V +++G
Sbjct: 345 AGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNG 404
Query: 99 -FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVE 157
F ++LN + DAG Y C+ +V + I G P L V P ++ A G +++
Sbjct: 405 TFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGE--PNLKV-PGNVTAVLGETLK 461
Query: 158 IPC 160
+PC
Sbjct: 462 VPC 464
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 78/396 (19%), Positives = 140/396 (35%), Gaps = 73/396 (18%)
Query: 12 ISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEG 71
I+ + ++ GRY C G + D+ + V+ P + T G T I C +
Sbjct: 79 IAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKT 138
Query: 72 H------PLPQMTWFHDGNSLDSDDHVTYEHDG-------------FVLVLNGVRESDAG 112
L + + +DS +V + G F +V+N +R SDAG
Sbjct: 139 ENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAG 198
Query: 113 VYNCVAQNSEGSAESVAMIRINGHRAPRLV--------------------VKPFDMRAPA 152
Y C A + S + A +++ P LV V F R +
Sbjct: 199 QYLCQAGDDSNSNKKNADLQVL-KPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSS 257
Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTA-- 210
G + ++ G+ P E + + K + S+ + + +D+G Y C A
Sbjct: 258 GENCDVVVNTLGKRAPAF-----EGRILLNPQDK-DGSFSVVITGLRKEDAGRYLCGAHS 311
Query: 211 -SNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWF----- 264
L + + + P GS+ + C + ++
Sbjct: 312 DGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEG 371
Query: 265 -HDGNS---LDSDDHVTYEHDG------------FVLVLNGVRESDAGVYNCVAQNSEGS 308
+G +DS+ V +++G F ++LN + DAG Y C+
Sbjct: 372 AQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLW 431
Query: 309 AESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC 344
+V + I G P L V P ++ A G ++++PC
Sbjct: 432 RTTVEIKIIEGE--PNLKV-PGNVTAVLGETLKVPC 464
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 38/150 (25%), Positives = 60/150 (40%), Gaps = 28/150 (18%)
Query: 162 PDGEPLP----RIS--WSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLG 215
P+GE L RIS W+ D+ + +L +YN D+G+Y+C +
Sbjct: 40 PNGEKLSPNQQRISVVWNDDD-------------SSTLTIYNANIDDAGIYKCVVT---A 83
Query: 216 EDVAEGYLTVTGA---PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNS--L 270
ED + TV +F P + G + I C V P + W H G L
Sbjct: 84 EDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVIL 143
Query: 271 DSDDHVTYEHDGFVLVLNGVRESDAGVYNC 300
D + + L + G++++D G Y C
Sbjct: 144 KKDVRFIVLSNNY-LQIRGIKKTDEGTYRC 172
Score = 36.6 bits (83), Expect = 0.063, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 5/118 (4%)
Query: 2 DDRRSSTELVISGVQREHGGRYSCVAGNPAGVY-RGDLHVTVNAPPIFIQRPVSTTYSTG 60
+D SST L I + G Y CV G ++V + +F P + G
Sbjct: 57 NDDDSST-LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEG 115
Query: 61 STSRITCLVEGHPLPQMTWFHDGNS--LDSDDHVTYEHDGFVLVLNGVRESDAGVYNC 116
+ I C V P + W H G L D + + L + G++++D G Y C
Sbjct: 116 EDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY-LQIRGIKKTDEGTYRC 172
Score = 36.6 bits (83), Expect = 0.063, Method: Composition-based stats.
Identities = 37/165 (22%), Positives = 58/165 (35%), Gaps = 9/165 (5%)
Query: 52 PVSTTYSTGSTSRITCLVEGHPLPQ-MTWFH-DGNSLDSDDH----VTYEHDGFVLVLNG 105
P S G + C V G + ++WF +G L + V + D L +
Sbjct: 9 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYN 68
Query: 106 VRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGE 165
DAG+Y CV +G+ +S A + + + P G I C
Sbjct: 69 ANIDDAGIYKCVVTAEDGT-QSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSS 127
Query: 166 PLPRISWSKDEAEFV--EDRNHKIHRTGSLRLYNIGPQDSGLYRC 208
P I W + + +D + L++ I D G YRC
Sbjct: 128 LPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRC 172
Score = 36.6 bits (83), Expect = 0.063, Method: Composition-based stats.
Identities = 37/165 (22%), Positives = 58/165 (35%), Gaps = 9/165 (5%)
Query: 236 PVSTTYSTGSTSRITCLVEGHPLPQ-MTWFH-DGNSLDSDDH----VTYEHDGFVLVLNG 289
P S G + C V G + ++WF +G L + V + D L +
Sbjct: 9 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYN 68
Query: 290 VRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGE 349
DAG+Y CV +G+ +S A + + + P G I C
Sbjct: 69 ANIDDAGIYKCVVTAEDGT-QSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSS 127
Query: 350 PLPRISWSKDEAEFV--EDRNHKIHRTGSLRLYNIGPQDSGLYRC 392
P I W + + +D + L++ I D G YRC
Sbjct: 128 LPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRC 172
>pdb|1G0Y|R Chain R, Il-1 Receptor Type 1 Complexed With Antagonist Peptide
Af10847
Length = 312
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 101/275 (36%), Gaps = 54/275 (19%)
Query: 77 MTWFHDGNSLDSDDHVTYEHDGFV------LVLNGVRESDAGVYNCVAQNSEGSAESVAM 130
+TW+ D DS V+ E + L + D+G Y CV +NS
Sbjct: 35 ITWYKD----DSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLR---- 86
Query: 131 IRING---HRAPRLVVKP---FDMRAPAGSSVEIPC------KPDGEPLPRISWSKDEAE 178
I+I+ P L F + P + C K + LP++ W KD
Sbjct: 87 IKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKP 146
Query: 179 FVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTAS-NLLGED-----VAEGYLTVTGAPPI- 231
+ D H L + N+ + G Y C AS LG+ V E ++T+ P
Sbjct: 147 LLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIE-FITLEENKPTR 205
Query: 232 -FIQRPVSTTYST--GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE--------- 279
I P + T GS ++ C V G W +G+ +D DD V E
Sbjct: 206 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 265
Query: 280 ---HDGFVLVLNGVRESDAGVYN----CVAQNSEG 307
+ VLN + E ++ Y C A+N+ G
Sbjct: 266 NKRRSTLITVLN-ISEIESRFYKHPFTCFAKNTHG 299
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 55/153 (35%), Gaps = 26/153 (16%)
Query: 261 MTWFHDGNSLDSDDHVTYEHDGFV------LVLNGVRESDAGVYNCVAQNSEGSAESVAM 314
+TW+ D DS V+ E + L + D+G Y CV +NS
Sbjct: 35 ITWYKD----DSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLR---- 86
Query: 315 IRING---HRAPRLVVKP---FDMRAPAGSSVEIPC------KPDGEPLPRISWSKDEAE 362
I+I+ P L F + P + C K + LP++ W KD
Sbjct: 87 IKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKP 146
Query: 363 FVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTAS 395
+ D H L + N+ + G Y C AS
Sbjct: 147 LLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHAS 179
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 57/141 (40%), Gaps = 29/141 (20%)
Query: 10 LVISGVQREHGGRYSCVA-----GNPAGVYRGDLHVTV--NAP--PIFIQRPVSTTYST- 59
L++ V +H G Y+C A G + R +T+ N P P+ + P + T
Sbjct: 161 LIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVS-PANETMEVD 219
Query: 60 -GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE------------HDGFVLVLNGV 106
GS ++ C V G W +G+ +D DD V E + VLN +
Sbjct: 220 LGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLN-I 278
Query: 107 RESDAGVYN----CVAQNSEG 123
E ++ Y C A+N+ G
Sbjct: 279 SEIESRFYKHPFTCFAKNTHG 299
>pdb|1ITB|B Chain B, Type-1 Interleukin-1 Receptor Complexed With Interleukin-1
Beta
Length = 315
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 101/275 (36%), Gaps = 54/275 (19%)
Query: 77 MTWFHDGNSLDSDDHVTYEHDGFV------LVLNGVRESDAGVYNCVAQNSEGSAESVAM 130
+TW+ D DS V+ E + L + D+G Y CV +NS
Sbjct: 38 ITWYKD----DSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLR---- 89
Query: 131 IRING---HRAPRLVVKP---FDMRAPAGSSVEIPC------KPDGEPLPRISWSKDEAE 178
I+I+ P L F + P + C K + LP++ W KD
Sbjct: 90 IKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKP 149
Query: 179 FVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTAS-NLLGED-----VAEGYLTVTGAPPI- 231
+ D H L + N+ + G Y C AS LG+ V E ++T+ P
Sbjct: 150 LLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIE-FITLEENKPTR 208
Query: 232 -FIQRPVSTTYST--GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE--------- 279
I P + T GS ++ C V G W +G+ +D DD V E
Sbjct: 209 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 268
Query: 280 ---HDGFVLVLNGVRESDAGVYN----CVAQNSEG 307
+ VLN + E ++ Y C A+N+ G
Sbjct: 269 NKRRSTLITVLN-ISEIESRFYKHPFTCFAKNTHG 302
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 55/153 (35%), Gaps = 26/153 (16%)
Query: 261 MTWFHDGNSLDSDDHVTYEHDGFV------LVLNGVRESDAGVYNCVAQNSEGSAESVAM 314
+TW+ D DS V+ E + L + D+G Y CV +NS
Sbjct: 38 ITWYKD----DSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLR---- 89
Query: 315 IRING---HRAPRLVVKP---FDMRAPAGSSVEIPC------KPDGEPLPRISWSKDEAE 362
I+I+ P L F + P + C K + LP++ W KD
Sbjct: 90 IKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKP 149
Query: 363 FVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTAS 395
+ D H L + N+ + G Y C AS
Sbjct: 150 LLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHAS 182
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 57/141 (40%), Gaps = 29/141 (20%)
Query: 10 LVISGVQREHGGRYSCVA-----GNPAGVYRGDLHVTV--NAP--PIFIQRPVSTTYST- 59
L++ V +H G Y+C A G + R +T+ N P P+ + P + T
Sbjct: 164 LIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVS-PANETMEVD 222
Query: 60 -GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE------------HDGFVLVLNGV 106
GS ++ C V G W +G+ +D DD V E + VLN +
Sbjct: 223 LGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLN-I 281
Query: 107 RESDAGVYN----CVAQNSEG 123
E ++ Y C A+N+ G
Sbjct: 282 SEIESRFYKHPFTCFAKNTHG 302
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
Query: 227 GAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD----HVTYEHDG 282
G PP P + G + C G P P++TW G + S + H+ D
Sbjct: 3 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL 62
Query: 283 FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
L++ V++ D G+Y N GS + I I
Sbjct: 63 TTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG-----SL 193
P++ P D+ G + + C GEP P ++WS + + H +L
Sbjct: 6 PKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTL 65
Query: 194 RLYNIGPQDSGLYRCTASNLLGEDVA 219
+ ++ QD GLY + N G D A
Sbjct: 66 IIMDVQKQDGGLYTLSLGNEFGSDSA 91
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG-----SL 377
P++ P D+ G + + C GEP P ++WS + + H +L
Sbjct: 6 PKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTL 65
Query: 378 RLYNIGPQDSGLYRCTASNLLGEDVA 403
+ ++ QD GLY + N G D A
Sbjct: 66 IIMDVQKQDGGLYTLSLGNEFGSDSA 91
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 4/93 (4%)
Query: 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD----HVTYEHDGFV 100
PP P + G + C G P P++TW G + S + H+ D
Sbjct: 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTT 64
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
L++ V++ D G+Y N GS + I I
Sbjct: 65 LIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97
>pdb|1IRA|Y Chain Y, Complex Of The Interleukin-1 Receptor With The
Interleukin-1 Receptor Antagonist (il1ra)
pdb|4GAF|B Chain B, Crystal Structure Of Ebi-005, A Chimera Of Human Il-1beta
And Il-1ra, Bound To Human Interleukin-1 Receptor Type 1
Length = 319
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 101/275 (36%), Gaps = 54/275 (19%)
Query: 77 MTWFHDGNSLDSDDHVTYEHDGFV------LVLNGVRESDAGVYNCVAQNSEGSAESVAM 130
+TW+ D DS V+ E + L + D+G Y CV +NS
Sbjct: 38 ITWYKD----DSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLR---- 89
Query: 131 IRING---HRAPRLVVKP---FDMRAPAGSSVEIPC------KPDGEPLPRISWSKDEAE 178
I+I+ P L F + P + C K + LP++ W KD
Sbjct: 90 IKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKP 149
Query: 179 FVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTAS-NLLGED-----VAEGYLTVTGAPPI- 231
+ D H L + N+ + G Y C AS LG+ V E ++T+ P
Sbjct: 150 LLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIE-FITLEENKPTR 208
Query: 232 -FIQRPVSTTYST--GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE--------- 279
I P + T GS ++ C V G W +G+ +D DD V E
Sbjct: 209 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 268
Query: 280 ---HDGFVLVLNGVRESDAGVYN----CVAQNSEG 307
+ VLN + E ++ Y C A+N+ G
Sbjct: 269 NKRRSTLITVLN-ISEIESRFYKHPFTCFAKNTHG 302
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 55/153 (35%), Gaps = 26/153 (16%)
Query: 261 MTWFHDGNSLDSDDHVTYEHDGFV------LVLNGVRESDAGVYNCVAQNSEGSAESVAM 314
+TW+ D DS V+ E + L + D+G Y CV +NS
Sbjct: 38 ITWYKD----DSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLR---- 89
Query: 315 IRING---HRAPRLVVKP---FDMRAPAGSSVEIPC------KPDGEPLPRISWSKDEAE 362
I+I+ P L F + P + C K + LP++ W KD
Sbjct: 90 IKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKP 149
Query: 363 FVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTAS 395
+ D H L + N+ + G Y C AS
Sbjct: 150 LLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHAS 182
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 57/141 (40%), Gaps = 29/141 (20%)
Query: 10 LVISGVQREHGGRYSCVA-----GNPAGVYRGDLHVTV--NAP--PIFIQRPVSTTYST- 59
L++ V +H G Y+C A G + R +T+ N P P+ + P + T
Sbjct: 164 LIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVS-PANETMEVD 222
Query: 60 -GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE------------HDGFVLVLNGV 106
GS ++ C V G W +G+ +D DD V E + VLN +
Sbjct: 223 LGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLN-I 281
Query: 107 RESDAGVYN----CVAQNSEG 123
E ++ Y C A+N+ G
Sbjct: 282 SEIESRFYKHPFTCFAKNTHG 302
>pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|B Chain B, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|C Chain C, Crystal Structure Of Titin Domain M4, Tetragonal Form
Length = 103
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 7/96 (7%)
Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS----- 192
APR+ ++ R P G + +P + W + E E KIH T +
Sbjct: 8 APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESS--KIHYTNTSGVLT 65
Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGA 228
L + + DSG YR +N GE L VTG
Sbjct: 66 LEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 7/95 (7%)
Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS----- 376
APR+ ++ R P G + +P + W + E E KIH T +
Sbjct: 8 APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESS--KIHYTNTSGVLT 65
Query: 377 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
L + + DSG YR +N GE L VTG
Sbjct: 66 LEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTG 100
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 2/97 (2%)
Query: 41 TVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV 100
T++ P R S G +R V+ P ++ W+H+G L + Y + V
Sbjct: 4 TLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGV 63
Query: 101 LVLN--GVRESDAGVYNCVAQNSEGSAESVAMIRING 135
L L D+G Y V N +G A A + + G
Sbjct: 64 LTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTG 100
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 3/101 (2%)
Query: 221 GYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH 280
G T+ AP I + R S G +R V+ P ++ W+H+G L + Y +
Sbjct: 1 GPFTLDHAPRITL-RMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTN 59
Query: 281 DGFVLVLN--GVRESDAGVYNCVAQNSEGSAESVAMIRING 319
VL L D+G Y V N +G A A + + G
Sbjct: 60 TSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTG 100
>pdb|3QUM|B Chain B, Crystal Structure Of Human Prostate Specific Antigen (Psa)
In Fab Sandwich With A High Affinity And A Pca Selective
Antibody
pdb|3QUM|D Chain D, Crystal Structure Of Human Prostate Specific Antigen (Psa)
In Fab Sandwich With A High Affinity And A Pca Selective
Antibody
Length = 219
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 10/108 (9%)
Query: 174 KDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV------TG 227
KD+ D++ T ++L ++ +DS +Y C S L DV TV T
Sbjct: 65 KDKVTLTADKSSN---TAYMQLNSLTSEDSAVYYCARSGRLYFDVWGAGTTVTVSSAKTT 121
Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH 275
APP++ PV +TGS+ + CLV+G+ +T + SL S H
Sbjct: 122 APPVYPLAPVCGD-TTGSSVTLGCLVKGYFPESVTLLWNSGSLSSGVH 168
Score = 29.6 bits (65), Expect = 7.3, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 1 TDDRRSSTE-LVISGVQREHGGRYSCVAGNPA--GVYRGDLHVTVN-----APPIFIQRP 52
T D+ S+T + ++ + E Y C V+ VTV+ APP++ P
Sbjct: 71 TADKSSNTAYMQLNSLTSEDSAVYYCARSGRLYFDVWGAGTTVTVSSAKTTAPPVYPLAP 130
Query: 53 VSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH 91
V +TGS+ + CLV+G+ +T + SL S H
Sbjct: 131 VCGD-TTGSSVTLGCLVKGYFPESVTLLWNSGSLSSGVH 168
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 7/99 (7%)
Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH----RTG- 191
RAP + KP + G SV++ C+ P P++ W ++ E V+ +I TG
Sbjct: 14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNN-EMVQFNTDRISLYQDNTGR 72
Query: 192 -SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAP 229
+L + ++ +D+G Y +A N G L VT P
Sbjct: 73 VTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARP 111
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Query: 321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH----RTG- 375
RAP + KP + G SV++ C+ P P++ W ++ E V+ +I TG
Sbjct: 14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNN-EMVQFNTDRISLYQDNTGR 72
Query: 376 -SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
+L + ++ +D+G Y +A N G L VT
Sbjct: 73 VTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTA 109
Score = 37.0 bits (84), Expect = 0.046, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLD-SDDHVTYEHDG---FVL 101
P+FI +P S G + ++ C + P P++ W + + + D ++ D L
Sbjct: 16 PMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTL 75
Query: 102 VLNGVRESDAGVYNCVAQNSEG 123
++ V + DAG Y A N G
Sbjct: 76 LIKDVNKKDAGWYTVSAVNEAG 97
Score = 37.0 bits (84), Expect = 0.046, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLD-SDDHVTYEHDG---FVL 285
P+FI +P S G + ++ C + P P++ W + + + D ++ D L
Sbjct: 16 PMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTL 75
Query: 286 VLNGVRESDAGVYNCVAQNSEG 307
++ V + DAG Y A N G
Sbjct: 76 LIKDVNKKDAGWYTVSAVNEAG 97
>pdb|4DEP|B Chain B, Structure Of The Il-1b Signaling Complex
pdb|4DEP|E Chain E, Structure Of The Il-1b Signaling Complex
Length = 321
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 101/275 (36%), Gaps = 54/275 (19%)
Query: 77 MTWFHDGNSLDSDDHVTYEHDGFV------LVLNGVRESDAGVYNCVAQNSEGSAESVAM 130
+TW+ D DS V+ E + L + D+G Y CV +NS
Sbjct: 40 ITWYKD----DSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLR---- 91
Query: 131 IRING---HRAPRLVVKP---FDMRAPAGSSVEIPC------KPDGEPLPRISWSKDEAE 178
I+I+ P L F + P + C K + LP++ W KD
Sbjct: 92 IKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKP 151
Query: 179 FVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTAS-NLLGED-----VAEGYLTVTGAPPI- 231
+ D H L + N+ + G Y C AS LG+ V E ++T+ P
Sbjct: 152 LLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIE-FITLEENKPTR 210
Query: 232 -FIQRPVSTTYST--GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE--------- 279
I P + T GS ++ C V G W +G+ +D DD V E
Sbjct: 211 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 270
Query: 280 ---HDGFVLVLNGVRESDAGVYN----CVAQNSEG 307
+ VLN + E ++ Y C A+N+ G
Sbjct: 271 NKRRSTLITVLN-ISEIESRFYKHPFTCFAKNTHG 304
Score = 33.1 bits (74), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 55/153 (35%), Gaps = 26/153 (16%)
Query: 261 MTWFHDGNSLDSDDHVTYEHDGFV------LVLNGVRESDAGVYNCVAQNSEGSAESVAM 314
+TW+ D DS V+ E + L + D+G Y CV +NS
Sbjct: 40 ITWYKD----DSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLR---- 91
Query: 315 IRING---HRAPRLVVKP---FDMRAPAGSSVEIPC------KPDGEPLPRISWSKDEAE 362
I+I+ P L F + P + C K + LP++ W KD
Sbjct: 92 IKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKP 151
Query: 363 FVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTAS 395
+ D H L + N+ + G Y C AS
Sbjct: 152 LLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHAS 184
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 57/141 (40%), Gaps = 29/141 (20%)
Query: 10 LVISGVQREHGGRYSCVA-----GNPAGVYRGDLHVTV--NAP--PIFIQRPVSTTYST- 59
L++ V +H G Y+C A G + R +T+ N P P+ + P + T
Sbjct: 166 LIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVS-PANETMEVD 224
Query: 60 -GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE------------HDGFVLVLNGV 106
GS ++ C V G W +G+ +D DD V E + VLN +
Sbjct: 225 LGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLN-I 283
Query: 107 RESDAGVYN----CVAQNSEG 123
E ++ Y C A+N+ G
Sbjct: 284 SEIESRFYKHPFTCFAKNTHG 304
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
Query: 227 GAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD----HVTYEHDG 282
G PP P + G + C G P P++TW G + S + H+ D
Sbjct: 5 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL 64
Query: 283 FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
L++ V++ D G+Y N GS + I I
Sbjct: 65 TTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 99
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG-----SL 193
P++ P D+ G + + C GEP P ++WS + + H +L
Sbjct: 8 PKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTL 67
Query: 194 RLYNIGPQDSGLYRCTASNLLGEDVA 219
+ ++ QD GLY + N G D A
Sbjct: 68 IIMDVQKQDGGLYTLSLGNEFGSDSA 93
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG-----SL 377
P++ P D+ G + + C GEP P ++WS + + H +L
Sbjct: 8 PKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTL 67
Query: 378 RLYNIGPQDSGLYRCTASNLLGEDVA 403
+ ++ QD GLY + N G D A
Sbjct: 68 IIMDVQKQDGGLYTLSLGNEFGSDSA 93
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 4/93 (4%)
Query: 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD----HVTYEHDGFV 100
PP P + G + C G P P++TW G + S + H+ D
Sbjct: 7 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTT 66
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
L++ V++ D G+Y N GS + I I
Sbjct: 67 LIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 99
>pdb|4FOM|A Chain A, Crystal Structure Of Human Nectin-3 Full Ectodomain
(D1-D3)
Length = 308
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 118/295 (40%), Gaps = 43/295 (14%)
Query: 141 LVVKPFDMRAPAGSSVEIPCKPD-GEPLPRISWSKD-------------------EAEF- 179
++V+P + A G +V + C + E + +ISW K + E+
Sbjct: 3 IIVEP-HVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQ 61
Query: 180 --VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNL-LGEDVAEGYLTVTGAPPI-FIQR 235
V +N+ ++ ++ L+NIG DSG Y C A LG + +TV P + I+
Sbjct: 62 GRVLFKNYSLND-ATITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKG 120
Query: 236 PVSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLV----LNGV 290
P S T C+ G P+ + W D ++S ++ ++ ++ L
Sbjct: 121 PDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTT-TSFPNETATIISQYKLFPT 179
Query: 291 RESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAG-SSVEIPCKPDGE 349
R + CV ++ + ++ AP + V +D G V + C D
Sbjct: 180 RFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADAN 239
Query: 350 PLPRIS-WSKDEAEF---VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE 400
P P S WS+ + ++ + ++ +H L SG+Y C +N LG+
Sbjct: 240 PPPFKSVWSRLDGQWPDGLLASDNTLHFVHPLTF-----NYSGVYICKVTNSLGQ 289
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 47/222 (21%), Positives = 85/222 (38%), Gaps = 19/222 (8%)
Query: 21 GRYSCVAGN-PAGVYRGDLHVTVNAPPI--FIQRPVSTTYSTGSTSRITCLVE-GHPLPQ 76
G+Y C A P G + VTV P I+ P S T C+ G P+
Sbjct: 87 GKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAH 146
Query: 77 MTWFHDGNSLDSDDHVTYEHDGFVLV----LNGVRESDAGVYNCVAQNSEGSAESVAMIR 132
+ W D ++S ++ ++ ++ L R + CV ++ +
Sbjct: 147 IDWEGDLGEMESTT-TSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFI 205
Query: 133 INGHRAPRLVVKPFDMRAPAG-SSVEIPCKPDGEPLPRIS-WSKDEAEF---VEDRNHKI 187
++ AP + V +D G V + C D P P S WS+ + ++ + ++ +
Sbjct: 206 LDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDGLLASDNTL 265
Query: 188 HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAP 229
H L SG+Y C +N LG+ + + ++ P
Sbjct: 266 HFVHPLTF-----NYSGVYICKVTNSLGQRSDQKVIYISDPP 302
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT----GSL 193
AP +V P D+ G + E+ C+ G + ++W + ++++ + G+L
Sbjct: 312 APVIVEPPTDLNVTEGMAAELKCR-TGTSMTSVNWLTPNGTLMTHGSYRVRISVLHDGTL 370
Query: 194 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
N+ QD+G Y C +N G A L V
Sbjct: 371 NFTNVTVQDTGQYTCMVTNSAGNTTASATLNV 402
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT----GSL 377
AP +V P D+ G + E+ C+ G + ++W + ++++ + G+L
Sbjct: 312 APVIVEPPTDLNVTEGMAAELKCR-TGTSMTSVNWLTPNGTLMTHGSYRVRISVLHDGTL 370
Query: 378 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
N+ QD+G Y C +N G A L V
Sbjct: 371 NFTNVTVQDTGQYTCMVTNSAGNTTASATLNV 402
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 13/114 (11%)
Query: 30 PAGV---YRGDL---HVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG 83
PAG+ Y G+L H T AP + ++ P + G + + C G + + W
Sbjct: 292 PAGLKGRYIGELDQSHFTCYAP-VIVEPPTDLNVTEGMAAELKCRT-GTSMTSVNWLTPN 349
Query: 84 NSLDSDD----HVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
+L + ++ HDG L V D G Y C+ NS G+ + A + +
Sbjct: 350 GTLMTHGSYRVRISVLHDG-TLNFTNVTVQDTGQYTCMVTNSAGNTTASATLNV 402
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 6/96 (6%)
Query: 226 TGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD----HVTYEHD 281
T P+ ++ P + G + + C G + + W +L + ++ HD
Sbjct: 309 TCYAPVIVEPPTDLNVTEGMAAELKCRT-GTSMTSVNWLTPNGTLMTHGSYRVRISVLHD 367
Query: 282 GFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
G L V D G Y C+ NS G+ + A + +
Sbjct: 368 G-TLNFTNVTVQDTGQYTCMVTNSAGNTTASATLNV 402
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 14/74 (18%)
Query: 151 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN---------IGPQ 201
PA ++V+ C G P+P + W K+ EF ++ HR G ++ N + P
Sbjct: 25 PAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE-----HRIGGYKVRNQHWSLIMESVVPS 79
Query: 202 DSGLYRCTASNLLG 215
D G Y C N G
Sbjct: 80 DKGNYTCVVENEYG 93
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 14/74 (18%)
Query: 335 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN---------IGPQ 385
PA ++V+ C G P+P + W K+ EF ++ HR G ++ N + P
Sbjct: 25 PAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE-----HRIGGYKVRNQHWSLIMESVVPS 79
Query: 386 DSGLYRCTASNLLG 399
D G Y C N G
Sbjct: 80 DKGNYTCVVENEYG 93
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 116
+T + C G+P+P M W +G + + + + L++ V SD G Y C
Sbjct: 27 ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 86
Query: 117 VAQNSEGS 124
V +N GS
Sbjct: 87 VVENEYGS 94
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 300
+T + C G+P+P M W +G + + + + L++ V SD G Y C
Sbjct: 27 ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 86
Query: 301 VAQNSEGS 308
V +N GS
Sbjct: 87 VVENEYGS 94
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 14/74 (18%)
Query: 151 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN---------IGPQ 201
PA ++V+ C G P+P + W K+ EF ++ HR G ++ N + P
Sbjct: 21 PAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE-----HRIGGYKVRNQHWSLIMESVVPS 75
Query: 202 DSGLYRCTASNLLG 215
D G Y C N G
Sbjct: 76 DKGNYTCVVENEYG 89
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 14/74 (18%)
Query: 335 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN---------IGPQ 385
PA ++V+ C G P+P + W K+ EF ++ HR G ++ N + P
Sbjct: 21 PAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE-----HRIGGYKVRNQHWSLIMESVVPS 75
Query: 386 DSGLYRCTASNLLG 399
D G Y C N G
Sbjct: 76 DKGNYTCVVENEYG 89
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 116
+T + C G+P+P M W +G + + + + L++ V SD G Y C
Sbjct: 23 ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 82
Query: 117 VAQNSEGS 124
V +N GS
Sbjct: 83 VVENEYGS 90
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 300
+T + C G+P+P M W +G + + + + L++ V SD G Y C
Sbjct: 23 ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 82
Query: 301 VAQNSEGS 308
V +N GS
Sbjct: 83 VVENEYGS 90
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 14/74 (18%)
Query: 151 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN---------IGPQ 201
PA ++V+ C G P+P + W K+ EF ++ HR G ++ N + P
Sbjct: 26 PAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE-----HRIGGYKVRNQHWSLIMESVVPS 80
Query: 202 DSGLYRCTASNLLG 215
D G Y C N G
Sbjct: 81 DKGNYTCVVENEYG 94
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 14/74 (18%)
Query: 335 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN---------IGPQ 385
PA ++V+ C G P+P + W K+ EF ++ HR G ++ N + P
Sbjct: 26 PAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE-----HRIGGYKVRNQHWSLIMESVVPS 80
Query: 386 DSGLYRCTASNLLG 399
D G Y C N G
Sbjct: 81 DKGNYTCVVENEYG 94
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 116
+T + C G+P+P M W +G + + + + L++ V SD G Y C
Sbjct: 28 ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 87
Query: 117 VAQNSEGS 124
V +N GS
Sbjct: 88 VVENEYGS 95
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNC 300
+T + C G+P+P M W +G + + + + L++ V SD G Y C
Sbjct: 28 ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 87
Query: 301 VAQNSEGS 308
V +N GS
Sbjct: 88 VVENEYGS 95
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%)
Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN 197
AP D G + C G P+PRI+W + R+ L + +
Sbjct: 11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQD 70
Query: 198 IGPQDSGLYRCTASNLLGEDVAEGYLTV 225
P+D G Y C A N LG+ ++TV
Sbjct: 71 ALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%)
Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN 381
AP D G + C G P+PRI+W + R+ L + +
Sbjct: 11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQD 70
Query: 382 IGPQDSGLYRCTASNLLGEDVAEGYLTV 409
P+D G Y C A N LG+ ++TV
Sbjct: 71 ALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 65 ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 124
+ C V G P+P++TW +G + T E L + D G Y C+A+N+ G
Sbjct: 31 LQCSVRGTPVPRITWLLNGQPIQYARS-TCEAGVAELHIQDALPEDHGTYTCLAENALGQ 89
Query: 125 AESVAMIRIN 134
A + ++
Sbjct: 90 VSCSAWVTVH 99
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 249 ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 308
+ C V G P+P++TW +G + T E L + D G Y C+A+N+ G
Sbjct: 31 LQCSVRGTPVPRITWLLNGQPIQYARS-TCEAGVAELHIQDALPEDHGTYTCLAENALGQ 89
Query: 309 AESVAMIRIN 318
A + ++
Sbjct: 90 VSCSAWVTVH 99
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 15/111 (13%)
Query: 48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFH-------------DGNSLDS-DDHVT 93
F+Q P+S G + + C G P+P++ W+ DG LD H T
Sbjct: 24 FVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHAT 83
Query: 94 Y-EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVV 143
Y +H + ++ + E D G Y C A N R+ RA +V+
Sbjct: 84 YHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQAVVL 134
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 15/111 (13%)
Query: 232 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFH-------------DGNSLDS-DDHVT 277
F+Q P+S G + + C G P+P++ W+ DG LD H T
Sbjct: 24 FVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHAT 83
Query: 278 Y-EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVV 327
Y +H + ++ + E D G Y C A N R+ RA +V+
Sbjct: 84 YHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQAVVL 134
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 20/90 (22%)
Query: 141 LVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWS-------------KDEAEFVEDRNH-- 185
V P + G SVE+ C+ G P+P I W D A DR H
Sbjct: 24 FVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARL--DRVHIH 81
Query: 186 ---KIHRTGSLRLYNIGPQDSGLYRCTASN 212
H ++ + + +D+G Y C ASN
Sbjct: 82 ATYHQHAASTISIDTLVEEDTGTYECRASN 111
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 20/90 (22%)
Query: 325 LVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWS-------------KDEAEFVEDRNH-- 369
V P + G SVE+ C+ G P+P I W D A DR H
Sbjct: 24 FVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARL--DRVHIH 81
Query: 370 ---KIHRTGSLRLYNIGPQDSGLYRCTASN 396
H ++ + + +D+G Y C ASN
Sbjct: 82 ATYHQHAASTISIDTLVEEDTGTYECRASN 111
>pdb|3O3U|N Chain N, Crystal Structure Of Human Receptor For Advanced Glycation
Endproducts (Rage)
Length = 581
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 182 DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY----LTVTGAPPIFIQRPV 237
D ++ GSL L +G QD G++RC A N G++ Y + G P I
Sbjct: 423 DSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDS--- 479
Query: 238 STTYSTGSTSRI-TCLVEG-HPLPQMTWFHDGNSL 270
++ + G +++ TC+ EG +P ++W DG L
Sbjct: 480 ASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPL 514
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 366 DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY 406
D ++ GSL L +G QD G++RC A N G++ Y
Sbjct: 423 DSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNY 463
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 15/111 (13%)
Query: 48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG---NSLDSD-----------DHVT 93
F+Q P+S G + + C G P+P++ W+ +G N + S H T
Sbjct: 24 FVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDIXSQLWDGARLDRVHIHAT 83
Query: 94 Y-EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVV 143
Y +H + ++ + E D G Y C A N R+ RA +V+
Sbjct: 84 YHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQAVVL 134
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 15/111 (13%)
Query: 232 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG---NSLDSD-----------DHVT 277
F+Q P+S G + + C G P+P++ W+ +G N + S H T
Sbjct: 24 FVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDIXSQLWDGARLDRVHIHAT 83
Query: 278 Y-EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVV 327
Y +H + ++ + E D G Y C A N R+ RA +V+
Sbjct: 84 YHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQAVVL 134
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 20/90 (22%)
Query: 141 LVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWS-------------KDEAEFVEDRNH-- 185
V P + G SVE+ C+ G P+P I W D A DR H
Sbjct: 24 FVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDIXSQLWDGARL--DRVHIH 81
Query: 186 ---KIHRTGSLRLYNIGPQDSGLYRCTASN 212
H ++ + + +D+G Y C ASN
Sbjct: 82 ATYHQHAASTISIDTLVEEDTGTYECRASN 111
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 20/90 (22%)
Query: 325 LVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWS-------------KDEAEFVEDRNH-- 369
V P + G SVE+ C+ G P+P I W D A DR H
Sbjct: 24 FVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDIXSQLWDGARL--DRVHIH 81
Query: 370 ---KIHRTGSLRLYNIGPQDSGLYRCTASN 396
H ++ + + +D+G Y C ASN
Sbjct: 82 ATYHQHAASTISIDTLVEEDTGTYECRASN 111
>pdb|3S58|A Chain A, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S58|B Chain B, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S59|A Chain A, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S59|B Chain B, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
Length = 223
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 182 DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY----LTVTGAPPIFIQRPV 237
D ++ GSL L +G QD G++RC A N G++ Y + G P I
Sbjct: 55 DSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDS--- 111
Query: 238 STTYSTGSTSRI-TCLVEG-HPLPQMTWFHDGNSLDSDDH 275
++ + G +++ TC+ EG +P ++W DG L ++
Sbjct: 112 ASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEK 151
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 366 DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY 406
D ++ GSL L +G QD G++RC A N G++ Y
Sbjct: 55 DSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNY 95
>pdb|3CJJ|A Chain A, Crystal Structure Of Human Rage Ligand-Binding Domain
Length = 219
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 182 DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY----LTVTGAPPIFIQRPV 237
D ++ GSL L +G QD G++RC A N G++ Y + G P I
Sbjct: 52 DSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDS--- 108
Query: 238 STTYSTGSTSRI-TCLVEG-HPLPQMTWFHDGNSLDSDDH 275
++ + G +++ TC+ EG +P ++W DG L ++
Sbjct: 109 ASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEK 148
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 366 DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY 406
D ++ GSL L +G QD G++RC A N G++ Y
Sbjct: 52 DSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNY 92
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH---KIHRTGSLRLYNIGPQDSGLYRCT 209
G +V+ C+ DG+P P I W V +++ + G+L + QD+G Y C
Sbjct: 400 GHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCI 459
Query: 210 ASNLLGEDVAEGYLTV 225
A+N G D +L V
Sbjct: 460 AANAGGNDSMPAHLHV 475
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH---KIHRTGSLRLYNIGPQDSGLYRCT 393
G +V+ C+ DG+P P I W V +++ + G+L + QD+G Y C
Sbjct: 400 GHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCI 459
Query: 394 ASNLLGEDVAEGYLTV 409
A+N G D +L V
Sbjct: 460 AANAGGNDSMPAHLHV 475
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 60 GSTSRITCLVEGHPLPQMTWFHDGNSL---DSDDHVTYEHDGFVLVLNGVRESDAGVYNC 116
G T + C +G P P + W L S+ +T DG L + + D G Y C
Sbjct: 400 GHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDG-TLEVRYAQVQDNGTYLC 458
Query: 117 VAQNSEGS 124
+A N+ G+
Sbjct: 459 IAANAGGN 466
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSL---DSDDHVTYEHDGFVLVLNGVRESDAGVYNC 300
G T + C +G P P + W L S+ +T DG L + + D G Y C
Sbjct: 400 GHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDG-TLEVRYAQVQDNGTYLC 458
Query: 301 VAQNSEGS 308
+A N+ G+
Sbjct: 459 IAANAGGN 466
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 49 IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH----VTYEHDGFVLVLN 104
+Q PV+ G+ ITC V +P ++WF DG L S ++ + L +
Sbjct: 22 LQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVT 81
Query: 105 GVRESDAGVYNCVAQNSEGSAESVAMIRING 135
E+D G YNC A N G ES+ I +
Sbjct: 82 PDSENDFGNYNCTAVNRIGQ-ESLEFILVQA 111
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 233 IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH----VTYEHDGFVLVLN 288
+Q PV+ G+ ITC V +P ++WF DG L S ++ + L +
Sbjct: 22 LQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVT 81
Query: 289 GVRESDAGVYNCVAQNSEGSAESVAMIRING 319
E+D G YNC A N G ES+ I +
Sbjct: 82 PDSENDFGNYNCTAVNRIGQ-ESLEFILVQA 111
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 11/135 (8%)
Query: 308 SAESVAMIRINGHR-APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED 366
+A S A++ H AP+L P + G+ V I C+ P ISW +D + +
Sbjct: 4 AAASSALVPRGSHMYAPKLQ-GPVAVYTWEGNQVNITCEVFAYPSATISWFRD-GQLLPS 61
Query: 367 RNH---KIHRTGSLRLYNIGP---QDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPH 420
N+ KI+ T S + P D G Y CTA N +G++ E ++ V + P+
Sbjct: 62 SNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLE-FILVQADTPSSPSID 120
Query: 421 TSREPSASKPSVADD 435
EP +S V D
Sbjct: 121 QV-EPYSSTAQVQFD 134
Score = 38.9 bits (89), Expect = 0.015, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 12/127 (9%)
Query: 124 SAESVAMIRINGHR-APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED 182
+A S A++ H AP+L P + G+ V I C+ P ISW +D + +
Sbjct: 4 AAASSALVPRGSHMYAPKLQ-GPVAVYTWEGNQVNITCEVFAYPSATISWFRD-GQLLPS 61
Query: 183 RNH---KIHRTGSLRLYNIGP---QDSGLYRCTASNLLGEDVAEGYLT---VTGAPPIFI 233
N+ KI+ T S + P D G Y CTA N +G++ E L +P I
Sbjct: 62 SNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQ 121
Query: 234 QRPVSTT 240
P S+T
Sbjct: 122 VEPYSST 128
>pdb|3LEX|H Chain H, 2f5 Epitope Scaffold Elicited Anti-Hiv-1 Monoclonal
Antibody 11f10 In Complex With Hiv-1 Gp41
pdb|3LEX|A Chain A, 2f5 Epitope Scaffold Elicited Anti-Hiv-1 Monoclonal
Antibody 11f10 In Complex With Hiv-1 Gp41
Length = 221
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 10/90 (11%)
Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV-----TGAPPIFIQRPVSTTYSTGSTS 247
L+L+++ P+D+ Y C N L +G L T AP ++ PV +TGS+
Sbjct: 81 LQLHSVTPEDTATYFCAYGNYLPAYWGQGTLVTVSAAKTTAPSVYPLAPVCGD-TTGSSV 139
Query: 248 RITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
+ CLV+G+ P P +TW + SL S H
Sbjct: 140 TLGCLVKGYFPEPVTLTW--NSGSLSSGVH 167
Score = 30.4 bits (67), Expect = 4.3, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 13/91 (14%)
Query: 10 LVISGVQREHGGRYSCVAGN--PAGVYRGDLHVTVNA-----PPIFIQRPVSTTYSTGST 62
L + V E Y C GN PA +G L VTV+A P ++ PV +TGS+
Sbjct: 81 LQLHSVTPEDTATYFCAYGNYLPAYWGQGTL-VTVSAAKTTAPSVYPLAPVCGD-TTGSS 138
Query: 63 SRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 91
+ CLV+G+ P P +TW + SL S H
Sbjct: 139 VTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 167
>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human Leucine-
Rich Repeat-Containing Protein 4
Length = 103
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 6/100 (6%)
Query: 134 NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH----KIHR 189
+G P ++ P D+ G E+ C+ P+ + W + + +
Sbjct: 3 SGSSGPFIMDAPRDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLN 60
Query: 190 TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAP 229
G+L ++ D+G+Y C +N+ G A YL V+ P
Sbjct: 61 DGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSSGP 100
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 6/97 (6%)
Query: 318 NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH----KIHR 373
+G P ++ P D+ G E+ C+ P+ + W + + +
Sbjct: 3 SGSSGPFIMDAPRDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLN 60
Query: 374 TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
G+L ++ D+G+Y C +N+ G A YL V+
Sbjct: 61 DGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVS 97
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 38/97 (39%), Gaps = 10/97 (10%)
Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSK-------DEAEFVEDRNHKIHRTG 375
P V D G V + + GEP P +SW + D+ F E+ + R
Sbjct: 6 PTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR-- 63
Query: 376 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGE 412
LR+ D+G Y C A N G E L V GE
Sbjct: 64 -LRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99
Score = 37.0 bits (84), Expect = 0.055, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 37/96 (38%), Gaps = 10/96 (10%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSK-------DEAEFVEDRNHKIHRTG 191
P V D G V + + GEP P +SW + D+ F E+ + R
Sbjct: 6 PTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR-- 63
Query: 192 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 227
LR+ D+G Y C A N G E L V G
Sbjct: 64 -LRILAAERGDAGFYTCKAVNEYGARQCEARLEVRG 98
Score = 35.4 bits (80), Expect = 0.17, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
Query: 44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH-VTYEHDGFVLV 102
APP F + + G ++ V+G P P ++W + + D E +G +
Sbjct: 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63
Query: 103 LN--GVRESDAGVYNCVAQNSEGSAESVAMIRING 135
L DAG Y C A N G+ + A + + G
Sbjct: 64 LRILAAERGDAGFYTCKAVNEYGARQCEARLEVRG 98
Score = 35.4 bits (80), Expect = 0.17, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH-VTYEHDGFVLV 286
APP F + + G ++ V+G P P ++W + + D E +G +
Sbjct: 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63
Query: 287 LN--GVRESDAGVYNCVAQNSEGSAESVAMIRING 319
L DAG Y C A N G+ + A + + G
Sbjct: 64 LRILAAERGDAGFYTCKAVNEYGARQCEARLEVRG 98
>pdb|2ENS|A Chain A, Solution Structure Of The Third Ig-Like Domain From Human
Advanced Glycosylation End Product-Specific Receptor
Length = 96
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 140 RLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIG 199
+LVV+P G +V + C+ +P P+I W KD + L L IG
Sbjct: 12 QLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPV------LILPEIG 65
Query: 200 PQDSGLYRCTASN 212
PQD G Y C A++
Sbjct: 66 PQDQGTYSCVATH 78
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 324 RLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIG 383
+LVV+P G +V + C+ +P P+I W KD + L L IG
Sbjct: 12 QLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPV------LILPEIG 65
Query: 384 PQDSGLYRCTASN 396
PQD G Y C A++
Sbjct: 66 PQDQGTYSCVATH 78
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVR 107
+ P + G T +TC V P PQ+ W DG L +L +
Sbjct: 13 LVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVL-------ILPEIG 65
Query: 108 ESDAGVYNCVA-QNSEGSAESVAM 130
D G Y+CVA +S G ES A+
Sbjct: 66 PQDQGTYSCVATHSSHGPQESRAV 89
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 232 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVR 291
+ P + G T +TC V P PQ+ W DG L +L +
Sbjct: 13 LVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVL-------ILPEIG 65
Query: 292 ESDAGVYNCVA-QNSEGSAESVAM 314
D G Y+CVA +S G ES A+
Sbjct: 66 PQDQGTYSCVATHSSHGPQESRAV 89
>pdb|2LE9|A Chain A, Ragec2-S100a13 Tetrameric Complex
pdb|2LE9|D Chain D, Ragec2-S100a13 Tetrameric Complex
Length = 93
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 140 RLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIG 199
+LVV+P G +V + C+ +P P+I W KD + L L IG
Sbjct: 5 QLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPV------LILPEIG 58
Query: 200 PQDSGLYRCTASN 212
PQD G Y C A++
Sbjct: 59 PQDQGTYSCVATH 71
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 324 RLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIG 383
+LVV+P G +V + C+ +P P+I W KD + L L IG
Sbjct: 5 QLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPV------LILPEIG 58
Query: 384 PQDSGLYRCTASN 396
PQD G Y C A++
Sbjct: 59 PQDQGTYSCVATH 71
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVR 107
+ P + G T +TC V P PQ+ W DG L +L +
Sbjct: 6 LVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVL-------ILPEIG 58
Query: 108 ESDAGVYNCVA-QNSEGSAESVAM 130
D G Y+CVA +S G ES A+
Sbjct: 59 PQDQGTYSCVATHSSHGPQESRAV 82
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 232 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVR 291
+ P + G T +TC V P PQ+ W DG L +L +
Sbjct: 6 LVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVL-------ILPEIG 58
Query: 292 ESDAGVYNCVA-QNSEGSAESVAM 314
D G Y+CVA +S G ES A+
Sbjct: 59 PQDQGTYSCVATHSSHGPQESRAV 82
>pdb|1PSK|H Chain H, The Crystal Structure Of An Fab Fragment That Binds To The
Melanoma-Associated Gd2 Ganglioside
Length = 209
Score = 38.5 bits (88), Expect = 0.019, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 67/157 (42%), Gaps = 40/157 (25%)
Query: 153 GSSVEIPCKPDGEPLPR--ISWSKDE----AEFVEDRN--------------------HK 186
G+SV+I CK G + + W K E++ D N HK
Sbjct: 15 GASVKISCKTSGYTFTKYTMHWVKQSHGKSLEWIGDINPNNGGTNYNQKFKGTATLTVHK 74
Query: 187 IHRTGSLRLYNIGPQDSGLYRCTASNL--LGEDVAEGYLTV----TGAPPIFIQRPVSTT 240
T + L ++ +DS +Y CT+ + G+ LTV T AP ++ PV
Sbjct: 75 SSTTAYMELRSLTSEDSAVYYCTSKSFDYWGQGTT---LTVSSAKTTAPSVYPLAPVCGD 131
Query: 241 YSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
+TGS + CLV+G+ P P +TW + SL S H
Sbjct: 132 -TTGSAVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 165
>pdb|1WWC|A Chain A, Nt3 Binding Domain Of Human Trkc Receptor
Length = 118
Score = 37.7 bits (86), Expect = 0.030, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 65 ITCLVEGHPLPQMTWFHDGNSLDSDD--HVTYEHDGFV----LVLNGVRESDAGVYNCVA 118
I +V G+P P + W H+G L HV Y +G + L+ N + G Y +A
Sbjct: 25 IEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIA 84
Query: 119 QNSEGSAESVAMIRINGH 136
+N G+A INGH
Sbjct: 85 KNPLGTANQT----INGH 98
Score = 37.7 bits (86), Expect = 0.030, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 249 ITCLVEGHPLPQMTWFHDGNSLDSDD--HVTYEHDGFV----LVLNGVRESDAGVYNCVA 302
I +V G+P P + W H+G L HV Y +G + L+ N + G Y +A
Sbjct: 25 IEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIA 84
Query: 303 QNSEGSAESVAMIRINGH 320
+N G+A INGH
Sbjct: 85 KNPLGTANQT----INGH 98
>pdb|4EBQ|H Chain H, Fab Structure Of Anti-Vaccinia Virus D8l Antigen Mouse
Igg2a La5
Length = 221
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 16/113 (14%)
Query: 174 KDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE--DVAEGYLTVT----- 226
KD+A DR+ T ++L + +DS +Y CT SN + DV TVT
Sbjct: 65 KDKATLTVDRSSS---TAHMQLSSPTSEDSAVYYCTRSNYRYDYFDVWGAGTTVTVSSAK 121
Query: 227 -GAPPIFIQRPVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDHV 276
AP ++ PV +TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 122 TTAPSVYPLAPVCGD-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVHT 171
>pdb|4ETQ|H Chain H, Vaccinia Virus D8l Imv Envelope Protein In Complex With
Fab Of Murine Igg2a La5
pdb|4ETQ|A Chain A, Vaccinia Virus D8l Imv Envelope Protein In Complex With
Fab Of Murine Igg2a La5
Length = 221
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 16/113 (14%)
Query: 174 KDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE--DVAEGYLTVT----- 226
KD+A DR+ T ++L + +DS +Y CT SN + DV TVT
Sbjct: 65 KDKATLTVDRSSS---TAHMQLSSPTSEDSAVYYCTRSNYRYDYFDVWGAGTTVTVSSAK 121
Query: 227 -GAPPIFIQRPVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDHV 276
AP ++ PV +TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 122 TTAPSVYPLAPVCGD-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVHT 171
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH----KIHRTGSL 193
AP ++ P D+ G E+ C+ P+ + W + + + G+L
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGTL 409
Query: 194 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGA 228
++ D+G+Y C +N+ G A YL V+ A
Sbjct: 410 NFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTA 444
Score = 36.2 bits (82), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH----KIHRTGSL 377
AP ++ P D+ G E+ C+ P+ + W + + + G+L
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGTL 409
Query: 378 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
++ D+G+Y C +N+ G A YL V+
Sbjct: 410 NFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVS 442
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 37.4 bits (85), Expect = 0.044, Method: Composition-based stats.
Identities = 36/154 (23%), Positives = 61/154 (39%), Gaps = 12/154 (7%)
Query: 172 WSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPI 231
W+K+ E R + + R+ +DSG Y C + + A + V AP I
Sbjct: 39 WTKNGVELTATRKNASNM--EYRINKPRAEDSGEYHCV-YHFVSAPKANATIEVKAAPDI 95
Query: 232 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH--------VTYEHDGF 283
+ S + G + + C G+P P+ W N + + + E+
Sbjct: 96 TGHKR-SENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTE 154
Query: 284 VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
+ ++N D G Y C A NS GSA ++R+
Sbjct: 155 LNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188
Score = 36.2 bits (82), Expect = 0.092, Method: Composition-based stats.
Identities = 33/127 (25%), Positives = 48/127 (37%), Gaps = 22/127 (17%)
Query: 103 LNGVRESDAGVYNCV-----AQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVE 157
+N R D+G Y+CV A + + E A I GH+ G
Sbjct: 60 INKPRAEDSGEYHCVYHFVSAPKANATIEVKAAPDITGHKRSE--------NKNEGQDAM 111
Query: 158 IPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR--------TGSLRLYNIG-PQDSGLYRC 208
+ CK G P P W K E E+ ++ R L + N+ +D G Y C
Sbjct: 112 MYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYEC 171
Query: 209 TASNLLG 215
A+N +G
Sbjct: 172 NATNSIG 178
Score = 36.2 bits (82), Expect = 0.092, Method: Composition-based stats.
Identities = 33/127 (25%), Positives = 48/127 (37%), Gaps = 22/127 (17%)
Query: 287 LNGVRESDAGVYNCV-----AQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVE 341
+N R D+G Y+CV A + + E A I GH+ G
Sbjct: 60 INKPRAEDSGEYHCVYHFVSAPKANATIEVKAAPDITGHKRSE--------NKNEGQDAM 111
Query: 342 IPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR--------TGSLRLYNIG-PQDSGLYRC 392
+ CK G P P W K E E+ ++ R L + N+ +D G Y C
Sbjct: 112 MYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYEC 171
Query: 393 TASNLLG 399
A+N +G
Sbjct: 172 NATNSIG 178
Score = 36.2 bits (82), Expect = 0.093, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 9/141 (6%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTG 60
T S+ E I+ + E G Y CV + + + + V A P S + G
Sbjct: 49 TRKNASNMEYRINKPRAEDSGEYHCVY-HFVSAPKANATIEVKAAPDITGHKRSENKNEG 107
Query: 61 STSRITCLVEGHPLPQMTWFHDGNSLDSDDH--------VTYEHDGFVLVLNGVRESDAG 112
+ + C G+P P+ W N + + + E+ + ++N D G
Sbjct: 108 QDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPG 167
Query: 113 VYNCVAQNSEGSAESVAMIRI 133
Y C A NS GSA ++R+
Sbjct: 168 EYECNATNSIGSASVSTVLRV 188
>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
pdb|2IFG|B Chain B, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
Length = 347
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 75/198 (37%), Gaps = 38/198 (19%)
Query: 227 GAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-- 284
G P + +Q P + + G + C VEG L Q W + + T G +
Sbjct: 157 GVPTLKVQVP-NASVDVGDDVLLRCQVEGRGLEQAGWILT----ELEQSATVMKSGGLPS 211
Query: 285 --LVLNGVRESDAGVYN--CVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSV 340
L L V SD N C A+N G AE + ++ F ++V
Sbjct: 212 LGLTLANVT-SDLNRKNVTCWAENDVGRAEVSVQVNVS-----------FPASVQLHTAV 259
Query: 341 E-----IPCKPDGEPLPRISWSKDEA----------EFVEDRNHKIHRTGSLRLYNIGPQ 385
E IP DG+P P + W + + EF+E ++ R G LRL
Sbjct: 260 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHV 319
Query: 386 DSGLYRCTASNLLGEDVA 403
++G Y A+N G+ A
Sbjct: 320 NNGNYTLLAANPFGQASA 337
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 71/195 (36%), Gaps = 32/195 (16%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSL----- 193
P L V+ + G V + C+ +G L + W E E ++ + ++G L
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELE----QSATVMKSGGLPSLGL 214
Query: 194 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCL- 252
L N+ S L R + DV ++V + + P S T C+
Sbjct: 215 TLANV---TSDLNRKNVTCWAENDVGRAEVSVQ----VNVSFPASVQLHTAVEMHHWCIP 267
Query: 253 --VEGHPLPQMTWFHDGNSLDSDDHV-----------TYEHDGFVLVLNGVRESDAGVYN 299
V+G P P + W +G+ L+ + T H L LN + G Y
Sbjct: 268 FSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHG--CLRLNQPTHVNNGNYT 325
Query: 300 CVAQNSEGSAESVAM 314
+A N G A + M
Sbjct: 326 LLAANPFGQASASIM 340
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 45/121 (37%), Gaps = 23/121 (19%)
Query: 24 SCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCL---VEGHPLPQMTWF 80
+C A N G R ++ V VN + P S T C+ V+G P P + W
Sbjct: 229 TCWAENDVG--RAEVSVQVN-----VSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWL 281
Query: 81 HDGNSLDSDDHV-----------TYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVA 129
+G+ L+ + T H L LN + G Y +A N G A +
Sbjct: 282 FNGSVLNETSFIFTEFLEPAANETVRHG--CLRLNQPTHVNNGNYTLLAANPFGQASASI 339
Query: 130 M 130
M
Sbjct: 340 M 340
>pdb|2C5D|C Chain C, Structure Of A Minimal Gas6-Axl Complex
pdb|2C5D|D Chain D, Structure Of A Minimal Gas6-Axl Complex
Length = 195
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 60/153 (39%), Gaps = 12/153 (7%)
Query: 163 DGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV---A 219
DG+ L ++ + ED LR+ ++ D+G Y+C LG
Sbjct: 40 DGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLV--FLGHQTFVSQ 97
Query: 220 EGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTY 278
GY+ + G P F++ P T + + ++C +G P P + W D L +
Sbjct: 98 PGYVGLEGLP-YFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGP 156
Query: 279 EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES 311
+ V LN ++C A N++G S
Sbjct: 157 QRSLHVPGLNKTSS-----FSCEAHNAKGVTTS 184
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 9/129 (6%)
Query: 2 DDRRSSTELVISGVQREHGGRYSCVA--GNPAGVYRGDLHVTVNAPPIFIQRPVSTTYST 59
DD ++L I+ +Q G+Y C+ G+ V + +V + P F++ P T +
Sbjct: 62 DDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPG-YVGLEGLPYFLEEPEDRTVAA 120
Query: 60 GSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVA 118
+ ++C +G P P + W D L + + V LN ++C A
Sbjct: 121 NTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLNKTSS-----FSCEA 175
Query: 119 QNSEGSAES 127
N++G S
Sbjct: 176 HNAKGVTTS 184
>pdb|3QS9|E Chain E, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS9|F Chain F, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS9|G Chain G, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS9|H Chain H, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
Length = 527
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 73/375 (19%), Positives = 132/375 (35%), Gaps = 52/375 (13%)
Query: 5 RSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIF-IQRPVSTTYSTGSTS 63
R +VI + G Y + A Y V++ ++ ++RP
Sbjct: 100 RGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDA- 158
Query: 64 RITCLVEGHPLPQMTWF---HDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN 120
+ C+ E P P + W G S + + + VL E C A+N
Sbjct: 159 -LVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVL-----HELFGTDIRCCARN 212
Query: 121 SEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPD------GEPLPRISWSK 174
G E + I+ ++ P+ + ++ G + I CK G + +
Sbjct: 213 ELGR-ECTRLFTIDLNQTPQTTLPQLFLKV--GEPLWIRCKAVHVNHGFGLTWELENKAL 269
Query: 175 DEAEFVEDRNHKIHRTGSLRLY----NIGPQDSGLYRCTAS-----NLLGEDVAEGYLTV 225
+E + E + +RT L+ ++ D+G Y C++S + L V +G++
Sbjct: 270 EEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINA 329
Query: 226 TGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQM--TWFHDGNSLDSDDHVTYEHDGF 283
T + S Y V PQ+ TW S + +G+
Sbjct: 330 TNS---------SEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL--DNGY 378
Query: 284 VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIP 343
+ + G Y A+N + A+ M +N R P+++ + S+ +
Sbjct: 379 SISKFCNHKHQPGEYIFHAENDD--AQFTKMFTLNIRRKPQVLAE--------ASASQAS 428
Query: 344 CKPDGEPLPRISWSK 358
C DG PLP +W K
Sbjct: 429 CFSDGYPLPSWTWKK 443
>pdb|2Q8A|H Chain H, Structure Of The Malaria Antigen Ama1 In Complex With A
Growth- Inhibitory Antibody
Length = 210
Score = 36.6 bits (83), Expect = 0.068, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 39/86 (45%)
Query: 190 TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRI 249
T L+L ++ +D+ +Y CT S+ G+ + PP +TGS+ +
Sbjct: 78 TAYLQLSSLTSEDTAVYYCTLSHFWGQGTTLTVSSAKTTPPSVYPLAPGCGDTTGSSVTL 137
Query: 250 TCLVEGHPLPQMTWFHDGNSLDSDDH 275
CLV+G+ +T + SL S H
Sbjct: 138 GCLVKGYFPESVTVTWNSGSLSSSVH 163
>pdb|2Q8B|H Chain H, Structure Of The Malaria Antigen Ama1 In Complex With A
Growth- Inhibitory Antibody
Length = 210
Score = 36.6 bits (83), Expect = 0.074, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 39/86 (45%)
Query: 190 TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRI 249
T L+L ++ +D+ +Y CT S+ G+ + PP +TGS+ +
Sbjct: 78 TAYLQLSSLTSEDTAVYYCTLSHFWGQGTTLTVSSAKTTPPSVYPLAPGCGDTTGSSVTL 137
Query: 250 TCLVEGHPLPQMTWFHDGNSLDSDDH 275
CLV+G+ +T + SL S H
Sbjct: 138 GCLVKGYFPESVTVTWNSGSLSSSVH 163
>pdb|1G1C|A Chain A, I1 Domain From Titin
pdb|1G1C|B Chain B, I1 Domain From Titin
Length = 99
Score = 36.6 bits (83), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
Query: 41 TVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTY---EHD 97
++ AP IF +R S T GS + V G P P+ W+ +G ++ D + + E +
Sbjct: 2 SMEAPKIF-ERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDN 60
Query: 98 GFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 135
LV+ V D+ A N G S A + +
Sbjct: 61 VCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 98
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTY---EHDGFV 284
AP IF +R S T GS + V G P P+ W+ +G ++ D + + E +
Sbjct: 5 APKIF-ERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 63
Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 319
LV+ V D+ A N G S A + +
Sbjct: 64 LVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 98
>pdb|2Z4Q|B Chain B, Crystal Structure Of A Murine Antibody Fab 528
Length = 218
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 44/162 (27%)
Query: 153 GSSVEIPCKPDGEPLPR--ISWSKDE-----------------AEFVEDRNHKI------ 187
G+SV++PCK G+ + W K + E +K+
Sbjct: 15 GASVKLPCKASGDTFTSYWMHWVKQRHGHGPEWIGNIYPGSGGTNYAEKFKNKVTLTVDR 74
Query: 188 -HRTGSLRLYNIGPQDSGLYRCTAS------NLLGEDVAEGYLTV----TGAPPIFIQRP 236
RT + L + +DS +Y CT S + G+ + LTV T AP ++ P
Sbjct: 75 SSRTVYMHLSRLTSEDSAVYYCTRSGGPYFFDYWGQGTS---LTVSSAKTTAPSVYPLAP 131
Query: 237 VSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDHV 276
V +TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 132 VCGD-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVHT 170
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 36.2 bits (82), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 65 ITCLVEGHPLPQMTWFHDGNSLD-SDDHVTYEHD---GFVLVLNGVRESDAGVYNCVAQN 120
TC V G+P P++ WF DG + DH T + D L D G Y +A N
Sbjct: 27 FTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAAN 86
Query: 121 SEGSAESVAMIRI 133
+G + +
Sbjct: 87 PQGRVSCTGRLMV 99
Score = 36.2 bits (82), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 249 ITCLVEGHPLPQMTWFHDGNSLD-SDDHVTYEHD---GFVLVLNGVRESDAGVYNCVAQN 304
TC V G+P P++ WF DG + DH T + D L D G Y +A N
Sbjct: 27 FTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAAN 86
Query: 305 SEGSAESVAMIRI 317
+G + +
Sbjct: 87 PQGRVSCTGRLMV 99
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 36/97 (37%), Gaps = 5/97 (5%)
Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH-KIHR----TGS 376
AP +K + G V C+ G P P+I W KD + +H I R T S
Sbjct: 7 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCS 66
Query: 377 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGEN 413
L D G Y A+N G G L V N
Sbjct: 67 LHTTASTLDDDGNYTIMAANPQGRVSCTGRLMVQAVN 103
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 35/93 (37%), Gaps = 5/93 (5%)
Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH-KIHR----TGS 192
AP +K + G V C+ G P P+I W KD + +H I R T S
Sbjct: 7 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCS 66
Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
L D G Y A+N G G L V
Sbjct: 67 LHTTASTLDDDGNYTIMAANPQGRVSCTGRLMV 99
>pdb|2CRY|A Chain A, Solution Structure Of The Fifth Ig-Like Domain Of Human
Kin Of Irre Like 3
Length = 122
Score = 36.2 bits (82), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 19/110 (17%)
Query: 40 VTVNAPPIFIQRPVSTTYST----GSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTY 94
+TVN PPI +S+T + G +I C + P P ++ W N L+S Y
Sbjct: 9 LTVNGPPI-----ISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRY 63
Query: 95 E------HDGFVLVL---NGVRESDAGVYNCVAQNSEGSAESVAMIRING 135
+G + L N VR +YNC A NS GS + ++ G
Sbjct: 64 TVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQG 113
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 20/119 (16%)
Query: 215 GEDVAEGYLTVTGAPPIFIQRPVSTTYST----GSTSRITCLVEGHPLP-QMTWFHDGNS 269
G + G LTV G PPI +S+T + G +I C + P P ++ W N
Sbjct: 1 GSSGSSGTLTVNG-PPI-----ISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENV 54
Query: 270 LDSDDHVTYE------HDGFVLVL---NGVRESDAGVYNCVAQNSEGSAESVAMIRING 319
L+S Y +G + L N VR +YNC A NS GS + ++ G
Sbjct: 55 LESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQG 113
>pdb|1L6Z|A Chain A, Crystal Structure Of Murine Ceacam1a[1,4]: A Coronavirus
Receptor And Cell Adhesion Molecule In The Cea Family
Length = 216
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 55/150 (36%), Gaps = 27/150 (18%)
Query: 174 KDEAEFVEDRNHK-----------IHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY 222
K+ A FV + N I+ GSL I +D G+Y ++ E Y
Sbjct: 43 KEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLDMTD-------ENY 95
Query: 223 LTVTGAPPIFIQRPVS--------TTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD 274
+ +PV+ TT + +TCL + W + SL +
Sbjct: 96 RRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCL-SNDIGANIQWLFNSQSLQLTE 154
Query: 275 HVTYEHDGFVLVLNGVRESDAGVYNCVAQN 304
+T + +L ++ ++ DAG Y C N
Sbjct: 155 RMTLSQNNSILRIDPIKREDAGEYQCEISN 184
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 35 RGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTY 94
R +H V P F+Q +T S + +TCL + W + SL + +T
Sbjct: 103 RFHVHQPVTQP--FLQVTNTTVKELDSVT-LTCL-SNDIGANIQWLFNSQSLQLTERMTL 158
Query: 95 EHDGFVLVLNGVRESDAGVYNCVAQN 120
+ +L ++ ++ DAG Y C N
Sbjct: 159 SQNNSILRIDPIKREDAGEYQCEISN 184
>pdb|3B5H|A Chain A, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|B Chain B, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|C Chain C, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|D Chain D, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
Length = 184
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 49/127 (38%), Gaps = 15/127 (11%)
Query: 21 GRYSCV-AGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHP-LPQMT 78
G YSCV P G LH PP S + G T+ + C E P +
Sbjct: 62 GEYSCVFLPEPMGTANIQLH----GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWA 117
Query: 79 WFHDGNSLDSDDHVTYEHDGFVL---------VLNGVRESDAGVYNCVAQNSEGSAESVA 129
W+ +S D E FV + N E+D G Y C +S+GS +++
Sbjct: 118 WYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAII 177
Query: 130 MIRINGH 136
+R+ H
Sbjct: 178 TLRVRSH 184
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 49/127 (38%), Gaps = 14/127 (11%)
Query: 204 GLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHP-LPQMT 262
G Y C L E + + + G PP S + G T+ + C E P +
Sbjct: 62 GEYSCV---FLPEPMGTANIQLHG-PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWA 117
Query: 263 WFHDGNSLDSDDHVTYEHDGFVL---------VLNGVRESDAGVYNCVAQNSEGSAESVA 313
W+ +S D E FV + N E+D G Y C +S+GS +++
Sbjct: 118 WYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAII 177
Query: 314 MIRINGH 320
+R+ H
Sbjct: 178 TLRVRSH 184
>pdb|3R4D|A Chain A, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
pdb|3R4D|C Chain C, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
Length = 208
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 16/126 (12%)
Query: 187 IHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVS-------- 238
I+ GSL I +D G+Y ++ E Y + +PV+
Sbjct: 67 IYSNGSLLFQMITMKDMGVYTLDMTD-------ENYRRTQATVRFHVHQPVTQPFLQVTN 119
Query: 239 TTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVY 298
TT + +TCL + W + SL + +T + +L ++ ++ DAG Y
Sbjct: 120 TTVKELDSVTLTCL-SNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEY 178
Query: 299 NCVAQN 304
C N
Sbjct: 179 QCEISN 184
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 35 RGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTY 94
R +H V P F+Q +T S + +TCL + W + SL + +T
Sbjct: 103 RFHVHQPVTQP--FLQVTNTTVKELDSVT-LTCL-SNDIGANIQWLFNSQSLQLTERMTL 158
Query: 95 EHDGFVLVLNGVRESDAGVYNCVAQN 120
+ +L ++ ++ DAG Y C N
Sbjct: 159 SQNNSILRIDPIKREDAGEYQCEISN 184
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 65 ITCLVEGHPLPQMTWFHDGNSLD-SDDHVTYEHD---GFVLVLNGVRESDAGVYNCVAQN 120
TC V G+P P++ WF DG + DH T + D L D G Y +A N
Sbjct: 28 FTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAAN 87
Query: 121 SEG 123
+G
Sbjct: 88 PQG 90
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 249 ITCLVEGHPLPQMTWFHDGNSLD-SDDHVTYEHD---GFVLVLNGVRESDAGVYNCVAQN 304
TC V G+P P++ WF DG + DH T + D L D G Y +A N
Sbjct: 28 FTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAAN 87
Query: 305 SEG 307
+G
Sbjct: 88 PQG 90
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 37/98 (37%), Gaps = 5/98 (5%)
Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH-KIHR----TGS 376
AP +K + G V C+ G P P+I W KD + +H I R T S
Sbjct: 8 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCS 67
Query: 377 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENS 414
L D G Y A+N G G L V NS
Sbjct: 68 LHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNS 105
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 35/93 (37%), Gaps = 5/93 (5%)
Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH-KIHR----TGS 192
AP +K + G V C+ G P P+I W KD + +H I R T S
Sbjct: 8 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCS 67
Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
L D G Y A+N G G L V
Sbjct: 68 LHTTASTLDDDGNYTIMAANPQGRISCTGRLMV 100
>pdb|3LEY|H Chain H, 2f5 Epitope Scaffold Elicited Anti-Hiv-1 Monoclonal
Antibody 6a7 In Complex With Hiv-1 Gp41
Length = 221
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 10/90 (11%)
Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV-----TGAPPIFIQRPVSTTYSTGSTS 247
L+L ++ +D+ Y C N L +G L T AP ++ PV +TGS+
Sbjct: 81 LQLNSVTTEDTATYYCAFGNYLPAYWGQGTLVTVSAAKTTAPSVYPLAPVCGD-TTGSSV 139
Query: 248 RITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
+ CLV+G+ P P +TW + SL S H
Sbjct: 140 TLGCLVKGYFPEPVTLTW--NSGSLSSGVH 167
Score = 32.7 bits (73), Expect = 1.0, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 13/99 (13%)
Query: 2 DDRRSSTELVISGVQREHGGRYSCVAGN--PAGVYRGDLHVTVNA-----PPIFIQRPVS 54
D ++ L ++ V E Y C GN PA +G L VTV+A P ++ PV
Sbjct: 73 DTSKNQFFLQLNSVTTEDTATYYCAFGNYLPAYWGQGTL-VTVSAAKTTAPSVYPLAPVC 131
Query: 55 TTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 91
+TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 132 GD-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 167
>pdb|4H20|H Chain H, Crystal Structure And Computational Modeling Of The Fab
Fragment From The Protective Anti-ricin Monoclonal
Antibody Rac18
Length = 220
Score = 35.4 bits (80), Expect = 0.16, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 13/100 (13%)
Query: 186 KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA---EGYLTV-----TGAPPIFIQRPV 237
K T + L ++ +DS +Y C L G A +G L T AP ++ PV
Sbjct: 74 KSSSTAYMELNSLTSEDSAVYYCARRGLTGALFAYWGQGTLVTVSAAKTTAPSVYPLAPV 133
Query: 238 STTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
+TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 134 CGD-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 170
>pdb|2I9L|B Chain B, Structure Of Fab 7d11 From A Neutralizing Antibody Against
The Poxvirus L1 Protein
pdb|2I9L|D Chain D, Structure Of Fab 7d11 From A Neutralizing Antibody Against
The Poxvirus L1 Protein
pdb|2I9L|F Chain F, Structure Of Fab 7d11 From A Neutralizing Antibody Against
The Poxvirus L1 Protein
pdb|2I9L|H Chain H, Structure Of Fab 7d11 From A Neutralizing Antibody Against
The Poxvirus L1 Protein
Length = 219
Score = 35.4 bits (80), Expect = 0.16, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 16/112 (14%)
Query: 174 KDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA---EGYLTV----- 225
KD+A D++ T ++L ++ +DS +Y C + + G D A +G L
Sbjct: 65 KDKATLTADKSSS---TVYMQLSSLTSEDSAVYYCARTTVDGYDFAYWGQGTLVTVSAAK 121
Query: 226 TGAPPIFIQRPVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
T AP ++ P S T S + CLV+G+ P P +TW + SL S H
Sbjct: 122 TTAPSVYPLAPGSAA-QTNSMVTLGCLVKGYFPEPVTVTW--NSGSLSSGVH 170
>pdb|2G2R|H Chain H, Green-Fluorescent Antibody 11g10 In Complex With Its
Hapten (Nitro-Stilbene Derivative)
pdb|2G2R|B Chain B, Green-Fluorescent Antibody 11g10 In Complex With Its
Hapten (Nitro-Stilbene Derivative)
Length = 219
Score = 35.0 bits (79), Expect = 0.17, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 186 KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV-------TGAPPIFIQRPVS 238
K T + L ++ +DS +Y C + + V G+ T+ T AP ++ PV
Sbjct: 74 KSSNTAYMDLNSLTSEDSAVYYCVPYDYAADRVYWGHGTLVTVSTAKTTAPSVYPLAPVC 133
Query: 239 TTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
+TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 134 GG-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 169
>pdb|4FRW|A Chain A, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|B Chain B, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|C Chain C, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|D Chain D, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|E Chain E, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|F Chain F, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
Length = 218
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 10 LVISGVQREHGGRYSC-VAGNPAGVYRGDLHVTVNAPPIFIQRP-VSTTYSTGSTSRITC 67
L+ + VQ + G Y C V+ PAG ++ L + V PP+ P + G T +C
Sbjct: 82 LLRNAVQADEG-EYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASC 140
Query: 68 LVEGHPLPQMTW 79
EG P P +TW
Sbjct: 141 TAEGSPAPSVTW 152
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Query: 97 DGFVLVLNGVRESDAGVYNC-VAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSS 155
DG VL+ N V ++D G Y C V+ GS ++ +R+ P L P + G +
Sbjct: 78 DGSVLLRNAV-QADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGP-ALEEGQGLT 135
Query: 156 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSL 193
+ C +G P P ++W + R+ K R+ ++
Sbjct: 136 LAASCTAEGSPAPSVTWDTEVKGTTSSRSFKHSRSAAV 173
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Query: 281 DGFVLVLNGVRESDAGVYNC-VAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSS 339
DG VL+ N V ++D G Y C V+ GS ++ +R+ P L P + G +
Sbjct: 78 DGSVLLRNAV-QADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGP-ALEEGQGLT 135
Query: 340 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSL 377
+ C +G P P ++W + R+ K R+ ++
Sbjct: 136 LAASCTAEGSPAPSVTWDTEVKGTTSSRSFKHSRSAAV 173
>pdb|1CFS|B Chain B, Anti-P24 (Hiv-1) Fab Fragment Cb41 Complexed With An
Epitope-Unrelated Peptide
pdb|1CFT|B Chain B, Anti-P24 (Hiv-1) Fab Fragment Cb41 Complexed With An
Epitope-Unrelated D-Peptide
pdb|1CFN|B Chain B, Anti-P24 (Hiv-1) Fab Fragment Cb41 Complexed With An
Epitope-Related Peptide
pdb|1CFQ|B Chain B, Anti-P24 (Hiv-1) Fab Fragment Cb41
pdb|1BOG|B Chain B, Anti-P24 (Hiv-1) Fab Fragment Cb41 Complexed With An
Epitope-Homologous Peptide
pdb|1HH6|B Chain B, Anti-P24 (Hiv-1) Fab Fragment Cb41 Complexed With A
Peptide
pdb|1HH9|B Chain B, Anti-P24 (Hiv-1) Fab Fragment Cb41 Complexed With A
Peptide
pdb|1HI6|B Chain B, Anti-P24 (Hiv-1) Fab Fragment Cb41 Complexed With A
Peptide
Length = 213
Score = 35.0 bits (79), Expect = 0.20, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 15/108 (13%)
Query: 174 KDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV----TGAP 229
K +A D++ T + L ++ +DS +Y CT + G+ +TV T AP
Sbjct: 65 KGKATLTADKSST---TAFMELSSLTSEDSAVYYCTRKDYWGQGT---LVTVSAAKTTAP 118
Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
++ PV +TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 119 SVYPLVPVCGG-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 163
>pdb|3IET|B Chain B, Crystal Structure Of 237mab With Antigen
pdb|3IET|D Chain D, Crystal Structure Of 237mab With Antigen
Length = 218
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 11/99 (11%)
Query: 2 DDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGD------LHVTVNAPPIFIQRPVST 55
DD +S L ++ ++ E G Y C G Y G T AP ++ PV
Sbjct: 75 DDSKSRMSLQMNSLRAEDTGIYYCSGGKVRNAYWGQGTTVTVSSKTTTAPSVYPLAPVCG 134
Query: 56 TYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDHV 92
+TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 135 D-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVHT 170
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 192 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG-----APPIFIQRPVSTTYSTGST 246
SL++ ++ +D+G+Y C+ + +G AP ++ PV +TGS+
Sbjct: 82 SLQMNSLRAEDTGIYYCSGGKVRNAYWGQGTTVTVSSKTTTAPSVYPLAPVCGD-TTGSS 140
Query: 247 SRITCLVEGH-PLP-QMTWFHDGNSLDSDDHV 276
+ CLV+G+ P P +TW + SL S H
Sbjct: 141 VTLGCLVKGYFPEPVTLTW--NSGSLSSGVHT 170
>pdb|3IF1|B Chain B, Crystal Structure Of 237mab In Complex With A Galnac
pdb|3IF1|D Chain D, Crystal Structure Of 237mab In Complex With A Galnac
Length = 217
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 11/99 (11%)
Query: 2 DDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGD------LHVTVNAPPIFIQRPVST 55
DD +S L ++ ++ E G Y C G Y G T AP ++ PV
Sbjct: 75 DDSKSRMSLQMNSLRAEDTGIYYCSGGKVRNAYWGQGTTVTVSSKTTKAPSVYPLAPVCG 134
Query: 56 TYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDHV 92
+TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 135 D-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVHT 170
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 192 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG-----APPIFIQRPVSTTYSTGST 246
SL++ ++ +D+G+Y C+ + +G AP ++ PV +TGS+
Sbjct: 82 SLQMNSLRAEDTGIYYCSGGKVRNAYWGQGTTVTVSSKTTKAPSVYPLAPVCGD-TTGSS 140
Query: 247 SRITCLVEGH-PLP-QMTWFHDGNSLDSDDHV 276
+ CLV+G+ P P +TW + SL S H
Sbjct: 141 VTLGCLVKGYFPEPVTLTW--NSGSLSSGVHT 170
>pdb|4FAB|H Chain H, Three-Dimensional Structure Of A Fluorescein-Fab Complex
Crystallized In 2-Methyl-2,4-Pentanediol
Length = 216
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 47/168 (27%), Positives = 74/168 (44%), Gaps = 40/168 (23%)
Query: 115 NCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSK 174
N V Q+ E E VA IR KP++ SV+ R + S+
Sbjct: 35 NWVRQSPEKGLEWVAQIR----------NKPYNYETYYSDSVK----------GRFTISR 74
Query: 175 DEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY-LTV----TGAP 229
D+++ + L++ N+ +D G+Y CT S + +G +TV T AP
Sbjct: 75 DDSK----------SSVYLQMNNLRVEDMGIYYCTGSYYGMDYWGQGTSVTVSSAKTTAP 124
Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
++ PV +TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 125 SVYPLAPVCGD-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 169
Score = 34.3 bits (77), Expect = 0.30, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 2 DDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGD-LHVTVN-----APPIFIQRPVST 55
DD +SS L ++ ++ E G Y C Y G VTV+ AP ++ PV
Sbjct: 75 DDSKSSVYLQMNNLRVEDMGIYYCTGSYYGMDYWGQGTSVTVSSAKTTAPSVYPLAPVCG 134
Query: 56 TYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 91
+TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 135 D-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 169
>pdb|2LVC|A Chain A, Solution Nmr Structure Of Ig Like Domain (805-892) Of
Obscurin-Like Protein 1 From Homo Sapiens, Northeast
Structural Genomics Consortium (Nesg) Target Hr8578k
Length = 91
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 46 PIFIQRPVSTTYSTGSTSR---ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG--FV 100
P+ I P + TS + C V+ P + W+ DG ++ D V E++G
Sbjct: 4 PVHIVDPREHVFVHAITSECVMLACEVDREDAP-VRWYKDGQEVEESDFVVLENEGPHRR 62
Query: 101 LVLNGVRESDAGVYNCVA 118
LVL + SD G + CVA
Sbjct: 63 LVLPATQPSDGGEFQCVA 80
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 230 PIFIQRPVSTTYSTGSTSR---ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG--FV 284
P+ I P + TS + C V+ P + W+ DG ++ D V E++G
Sbjct: 4 PVHIVDPREHVFVHAITSECVMLACEVDREDAP-VRWYKDGQEVEESDFVVLENEGPHRR 62
Query: 285 LVLNGVRESDAGVYNCVA 302
LVL + SD G + CVA
Sbjct: 63 LVLPATQPSDGGEFQCVA 80
>pdb|3FN3|A Chain A, Dimeric Structure Of Pd-L1
pdb|3FN3|B Chain B, Dimeric Structure Of Pd-L1
Length = 221
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLV 69
L I+ V+ + G Y C+ Y+ + V VNAP I + + S +TC
Sbjct: 82 LQITDVKLQDAGVYRCMISYGGADYKR-ITVKVNAPYNKINQRILVVDPVTSEHELTCQA 140
Query: 70 EGHPLPQMTW 79
EG+P ++ W
Sbjct: 141 EGYPKAEVIW 150
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 191 GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRIT 250
+L++ ++ QD+G+YRC S G D + V AP I + + S +T
Sbjct: 80 AALQITDVKLQDAGVYRCMIS-YGGADYKRITVKV-NAPYNKINQRILVVDPVTSEHELT 137
Query: 251 CLVEGHPLPQMTW 263
C EG+P ++ W
Sbjct: 138 CQAEGYPKAEVIW 150
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 54/145 (37%), Gaps = 29/145 (20%)
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVK---PFD-------MRA 150
L + V+ DAGVY C MI G R+ VK P++ +
Sbjct: 82 LQITDVKLQDAGVYRC-------------MISYGGADYKRITVKVNAPYNKINQRILVVD 128
Query: 151 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN------IGPQDSG 204
P S E+ C+ +G P + W+ + + + + + +L+N I +
Sbjct: 129 PVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNE 188
Query: 205 LYRCTASNLLGEDVAEGYLTVTGAP 229
++ CT L E+ L + P
Sbjct: 189 IFYCTFRRLDPEENHTAELVIPELP 213
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 49/129 (37%), Gaps = 29/129 (22%)
Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVK---PFD-------MRA 334
L + V+ DAGVY C MI G R+ VK P++ +
Sbjct: 82 LQITDVKLQDAGVYRC-------------MISYGGADYKRITVKVNAPYNKINQRILVVD 128
Query: 335 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN------IGPQDSG 388
P S E+ C+ +G P + W+ + + + + + +L+N I +
Sbjct: 129 PVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNE 188
Query: 389 LYRCTASNL 397
++ CT L
Sbjct: 189 IFYCTFRRL 197
>pdb|1FLR|H Chain H, 4-4-20 Fab Fragment
Length = 219
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 79/181 (43%), Gaps = 41/181 (22%)
Query: 102 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK 161
V +G SD + N V Q+ E E VA IR KP++ SV+
Sbjct: 23 VASGFTFSDYWM-NWVRQSPEKGLEWVAQIR----------NKPYNYETYYSDSVK---- 67
Query: 162 PDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG 221
R + S+D D ++ L++ N+ +D G+Y CT S + +G
Sbjct: 68 ------GRFTISRD------DSKSSVY----LQMNNLRVEDMGIYYCTGSYYGMDYWGQG 111
Query: 222 Y-LTV----TGAPPIFIQRPVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDD 274
+TV T AP ++ PV +TGS+ + CLV+G+ P P +TW + SL S
Sbjct: 112 TSVTVSSAKTTAPSVYPLAPVCGD-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGV 168
Query: 275 H 275
H
Sbjct: 169 H 169
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 2 DDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGD-LHVTVN-----APPIFIQRPVST 55
DD +SS L ++ ++ E G Y C Y G VTV+ AP ++ PV
Sbjct: 75 DDSKSSVYLQMNNLRVEDMGIYYCTGSYYGMDYWGQGTSVTVSSAKTTAPSVYPLAPVCG 134
Query: 56 TYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 91
+TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 135 D-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 169
>pdb|4I0K|A Chain A, Crystal Structure Of Murine B7-H3 Extracellular Domain
Length = 222
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 55/140 (39%), Gaps = 10/140 (7%)
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKP-FDMRAPAGSSVEIP 159
L L VR +D G Y C + + +V++ + P + ++P D+R G+ V I
Sbjct: 74 LRLQRVRVTDEGSYTCFVSIQDFDSAAVSLQVAAPYSKPSMTLEPNKDLRP--GNMVTIT 131
Query: 160 CKP-DGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGP------QDSGLYRCTASN 212
C G P + W + + L+++ +G Y C N
Sbjct: 132 CSSYQGYPEAEVFWKDGQGVPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRN 191
Query: 213 LLGEDVAEGYLTVTGAPPIF 232
+ + A G +T+TG P F
Sbjct: 192 PVLQQDAHGSVTITGQPLTF 211
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 54/136 (39%), Gaps = 10/136 (7%)
Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKP-FDMRAPAGSSVEIP 343
L L VR +D G Y C + + +V++ + P + ++P D+R G+ V I
Sbjct: 74 LRLQRVRVTDEGSYTCFVSIQDFDSAAVSLQVAAPYSKPSMTLEPNKDLRP--GNMVTIT 131
Query: 344 CKP-DGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGP------QDSGLYRCTASN 396
C G P + W + + L+++ +G Y C N
Sbjct: 132 CSSYQGYPEAEVFWKDGQGVPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRN 191
Query: 397 LLGEDVAEGYLTVTGE 412
+ + A G +T+TG+
Sbjct: 192 PVLQQDAHGSVTITGQ 207
>pdb|3BIK|A Chain A, Crystal Structure Of The Pd-1PD-L1 Complex
pdb|3BIS|A Chain A, Crystal Structure Of The Pd-L1
pdb|3BIS|B Chain B, Crystal Structure Of The Pd-L1
Length = 222
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLV 69
L I+ V+ + G Y C+ Y+ + V VNAP I + + S +TC
Sbjct: 82 LQITDVKLQDAGVYRCMISYGGADYKR-ITVKVNAPYNKINQRILVVDPVTSEHELTCQA 140
Query: 70 EGHPLPQMTW 79
EG+P ++ W
Sbjct: 141 EGYPKAEVIW 150
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 191 GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRIT 250
+L++ ++ QD+G+YRC S G D + V AP I + + S +T
Sbjct: 80 AALQITDVKLQDAGVYRCMIS-YGGADYKRITVKV-NAPYNKINQRILVVDPVTSEHELT 137
Query: 251 CLVEGHPLPQMTW 263
C EG+P ++ W
Sbjct: 138 CQAEGYPKAEVIW 150
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 54/145 (37%), Gaps = 29/145 (20%)
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVK---PFD-------MRA 150
L + V+ DAGVY C MI G R+ VK P++ +
Sbjct: 82 LQITDVKLQDAGVYRC-------------MISYGGADYKRITVKVNAPYNKINQRILVVD 128
Query: 151 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN------IGPQDSG 204
P S E+ C+ +G P + W+ + + + + + +L+N I +
Sbjct: 129 PVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNE 188
Query: 205 LYRCTASNLLGEDVAEGYLTVTGAP 229
++ CT L E+ L + P
Sbjct: 189 IFYCTFRRLDPEENHTAELVIPELP 213
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 49/129 (37%), Gaps = 29/129 (22%)
Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVK---PFD-------MRA 334
L + V+ DAGVY C MI G R+ VK P++ +
Sbjct: 82 LQITDVKLQDAGVYRC-------------MISYGGADYKRITVKVNAPYNKINQRILVVD 128
Query: 335 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN------IGPQDSG 388
P S E+ C+ +G P + W+ + + + + + +L+N I +
Sbjct: 129 PVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNE 188
Query: 389 LYRCTASNL 397
++ CT L
Sbjct: 189 IFYCTFRRL 197
>pdb|3SBW|C Chain C, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Human Pd-L1
Length = 222
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLV 69
L I+ V+ + G Y C+ Y+ + V VNAP I + + S +TC
Sbjct: 82 LQITDVKLQDAGVYRCMISYGGADYKR-ITVKVNAPYNKINQRILVVDPVTSEHELTCQA 140
Query: 70 EGHPLPQMTW 79
EG+P ++ W
Sbjct: 141 EGYPKAEVIW 150
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 191 GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRIT 250
+L++ ++ QD+G+YRC S G D + V AP I + + S +T
Sbjct: 80 AALQITDVKLQDAGVYRCMIS-YGGADYKRITVKV-NAPYNKINQRILVVDPVTSEHELT 137
Query: 251 CLVEGHPLPQMTW 263
C EG+P ++ W
Sbjct: 138 CQAEGYPKAEVIW 150
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 54/145 (37%), Gaps = 29/145 (20%)
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVK---PFD-------MRA 150
L + V+ DAGVY C MI G R+ VK P++ +
Sbjct: 82 LQITDVKLQDAGVYRC-------------MISYGGADYKRITVKVNAPYNKINQRILVVD 128
Query: 151 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN------IGPQDSG 204
P S E+ C+ +G P + W+ + + + + + +L+N I +
Sbjct: 129 PVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNE 188
Query: 205 LYRCTASNLLGEDVAEGYLTVTGAP 229
++ CT L E+ L + P
Sbjct: 189 IFYCTFRRLDPEENHTAELVIPELP 213
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 49/129 (37%), Gaps = 29/129 (22%)
Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVK---PFD-------MRA 334
L + V+ DAGVY C MI G R+ VK P++ +
Sbjct: 82 LQITDVKLQDAGVYRC-------------MISYGGADYKRITVKVNAPYNKINQRILVVD 128
Query: 335 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN------IGPQDSG 388
P S E+ C+ +G P + W+ + + + + + +L+N I +
Sbjct: 129 PVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNE 188
Query: 389 LYRCTASNL 397
++ CT L
Sbjct: 189 IFYCTFRRL 197
>pdb|3MJ6|A Chain A, Crystal Structure Of The Gammadelta T Cell Costimulatory
Receptor Junctional Adhesion Molecule-Like Protein, Jaml
pdb|3MJ7|A Chain A, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
pdb|3MJ9|A Chain A, Crystal Structure Of Jaml In Complex With The Stimulatory
Antibody Hl4e10
Length = 268
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 84/218 (38%), Gaps = 61/218 (27%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPC---KPDGEPLPRISW--SKDE---AEFV---------- 180
P L V +R G SV + C + + + + R+ W SKD+ +E+V
Sbjct: 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65
Query: 181 ----EDRNHKI----HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIF 232
++R+H + H GSL L ++ D G+Y C L E + P
Sbjct: 66 TGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEI-RLKNESMVMKKPVELWVLP-- 122
Query: 233 IQRPVSTTYSTGSTSRITCLV---EGHPLPQMTW-FHDGNSLDSDDHVTYE--------- 279
+ P G T+++ C + E + ++ W F G+ + + ++Y+
Sbjct: 123 -EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQ 181
Query: 280 -----------------HDGFVLVLNGVRESDAGVYNC 300
+DG + L V+ESD G+Y C
Sbjct: 182 SLGRFRNRVDLTGDISRNDGSI-KLQTVKESDQGIYTC 218
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 62/147 (42%), Gaps = 36/147 (24%)
Query: 93 TYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPA 152
T+ +DG L+L V+++D G+Y C E ++ +M+ L +P D+R
Sbjct: 79 TFHNDG-SLLLQDVQKADEGIYTC-----EIRLKNESMVMKKPVELWVLPEEPRDLRVRV 132
Query: 153 GSSVEIPC---KPDGEPLPRISW-------SKDEAEFVEDRNHK---------------- 186
G + ++ C + + + +++W +++E D N +
Sbjct: 133 GDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDL 192
Query: 187 ---IHRT-GSLRLYNIGPQDSGLYRCT 209
I R GS++L + D G+Y C+
Sbjct: 193 TGDISRNDGSIKLQTVKESDQGIYTCS 219
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 62/147 (42%), Gaps = 36/147 (24%)
Query: 277 TYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPA 336
T+ +DG L+L V+++D G+Y C E ++ +M+ L +P D+R
Sbjct: 79 TFHNDG-SLLLQDVQKADEGIYTC-----EIRLKNESMVMKKPVELWVLPEEPRDLRVRV 132
Query: 337 GSSVEIPCK---PDGEPLPRISW-------SKDEAEFVEDRNHK---------------- 370
G + ++ C + + + +++W +++E D N +
Sbjct: 133 GDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDL 192
Query: 371 ---IHRT-GSLRLYNIGPQDSGLYRCT 393
I R GS++L + D G+Y C+
Sbjct: 193 TGDISRNDGSIKLQTVKESDQGIYTCS 219
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 26/96 (27%)
Query: 323 PRLVVKPFDMRAPAGSSVEIPC---KPDGEPLPRISW--SKDE---AEFV---------- 364
P L V +R G SV + C + + + + R+ W SKD+ +E+V
Sbjct: 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65
Query: 365 ----EDRNHKI----HRTGSLRLYNIGPQDSGLYRC 392
++R+H + H GSL L ++ D G+Y C
Sbjct: 66 TGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTC 101
>pdb|3QG6|B Chain B, Structural Basis For Ligand Recognition And Discrimination
Of A Quorum Quenching Antibody
pdb|3QG6|H Chain H, Structural Basis For Ligand Recognition And Discrimination
Of A Quorum Quenching Antibody
pdb|3QG7|H Chain H, Structural Basis For Ligand Recognition And Discrimination
Of A Quorum Quenching Antibody
Length = 213
Score = 34.7 bits (78), Expect = 0.27, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 13/90 (14%)
Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGY-LTV----TGAPPIFIQRPVSTTYSTGSTS 247
L+L+++ +D+G Y CT G+ +G LTV T AP ++ PV +TGS+
Sbjct: 81 LQLHSVTIEDTGTYFCTRE---GDYWGQGTTLTVSSAKTTAPSVYPLAPVCGD-TTGSSV 136
Query: 248 RITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
+ CLV+G+ P P +TW + SL S H
Sbjct: 137 TLGCLVKGYFPEPVTLTW--NSGSLSSGVH 164
>pdb|4I9W|E Chain E, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
pdb|4I9W|G Chain G, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
Length = 217
Score = 34.3 bits (77), Expect = 0.29, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Query: 186 KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG-YLTVTGA---PPIFIQRPVSTTY 241
K T + L ++ +DS +Y CT N + + +G LTV+ A PP +
Sbjct: 74 KSSSTAYMELLSLTSEDSAIYYCTRGNYVFDYWGQGTTLTVSSAKTTPPSVYPLAPGSAA 133
Query: 242 STGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
T S + CLV+G+ P P +TW + SL S H
Sbjct: 134 QTNSMVTLGCLVKGYFPEPVTVTW--NSGSLSSGVH 167
>pdb|2BK8|A Chain A, M1 Domain From Titin
Length = 97
Score = 34.3 bits (77), Expect = 0.36, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 60 GSTSRITCLVEGHPLP-QMTWFHDGNSLDSDD--HVTYEHDGFVLVLNGVRESDAGVYNC 116
G + C +E + Q+TW+ L++ + +TYE +L + + + D G Y C
Sbjct: 16 GGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRC 75
Query: 117 VAQNSEGSAESVAMIRINGHR 137
N G S A + + G R
Sbjct: 76 KVVNDYGEDSSYAELFVKGVR 96
Score = 34.3 bits (77), Expect = 0.36, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 244 GSTSRITCLVEGHPLP-QMTWFHDGNSLDSDD--HVTYEHDGFVLVLNGVRESDAGVYNC 300
G + C +E + Q+TW+ L++ + +TYE +L + + + D G Y C
Sbjct: 16 GGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRC 75
Query: 301 VAQNSEGSAESVAMIRINGHR 321
N G S A + + G R
Sbjct: 76 KVVNDYGEDSSYAELFVKGVR 96
>pdb|2ZCK|H Chain H, Crystal Structure Of A Ternary Complex Between Psa, A
Substrat-Acyl Intermediate And An Activating Antibody
pdb|2ZCL|H Chain H, Crystal Structure Of Human Prostate Specific Antigen
Complexed With An Activating Antibody
Length = 230
Score = 33.9 bits (76), Expect = 0.40, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 17/114 (14%)
Query: 174 KDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY--------LTV 225
KD+A D + T ++L ++ +DS +Y C ++ G + E +TV
Sbjct: 65 KDKATLTVDTSSN---TAYIQLSSLSSEDSAVYFCARADY-GFNSGEAMDYWGQGTSVTV 120
Query: 226 ----TGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH 275
T APP++ PV +TGS+ + CLV+G+ +T + SL S H
Sbjct: 121 SSAKTTAPPVYPLAPVCGD-TTGSSVTLGCLVKGYFPESVTLLWNSGSLSSGVH 173
Score = 29.6 bits (65), Expect = 9.0, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH 91
APP++ PV +TGS+ + CLV+G+ +T + SL S H
Sbjct: 127 APPVYPLAPVCGD-TTGSSVTLGCLVKGYFPESVTLLWNSGSLSSGVH 173
>pdb|2ZCH|H Chain H, Crystal Structure Of Human Prostate Specific Antigen
Complexed With An Activating Antibody
Length = 229
Score = 33.9 bits (76), Expect = 0.40, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 17/114 (14%)
Query: 174 KDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY--------LTV 225
KD+A D + T ++L ++ +DS +Y C ++ G + E +TV
Sbjct: 65 KDKATLTVDTSSN---TAYIQLSSLSSEDSAVYFCARADY-GFNSGEAMDYWGQGTSVTV 120
Query: 226 ----TGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH 275
T APP++ PV +TGS+ + CLV+G+ +T + SL S H
Sbjct: 121 SSAKTTAPPVYPLAPVCGD-TTGSSVTLGCLVKGYFPESVTLLWNSGSLSSGVH 173
Score = 29.6 bits (65), Expect = 9.0, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH 91
APP++ PV +TGS+ + CLV+G+ +T + SL S H
Sbjct: 127 APPVYPLAPVCGD-TTGSSVTLGCLVKGYFPESVTLLWNSGSLSSGVH 173
>pdb|1FAI|H Chain H, Three-Dimensional Structure Of Two Crystal Forms Of Fab
R19.9, From A Monoclonal Anti-Arsonate Antibody
pdb|2F19|H Chain H, Three-Dimensional Structure Of Two Crystal Forms Of Fab
R19.9, From A Monoclonal Anti-Arsonate Antibody
Length = 221
Score = 33.9 bits (76), Expect = 0.44, Method: Composition-based stats.
Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 38/162 (23%)
Query: 152 AGSSVEIPCKPDGEPLPR--ISWSKDEA---------------------EFVEDRNHKIH 188
AGSSV++ CK G ++W K +F +
Sbjct: 14 AGSSVKMSCKASGYTFTSYGVNWVKQRPGQGLEWIGYINPGKGYLSYNEKFKGKTTLTVD 73
Query: 189 RTGS---LRLYNIGPQDSGLYRCTASNLLGEDVAEGY---------LTVTGA---PPIFI 233
R+ S ++L ++ +D+ +Y C S G D+A Y LTV+ A PP
Sbjct: 74 RSSSTAYMQLRSLTSEDAAVYFCARSFYGGSDLAVYYFDSWGQGTTLTVSSAKTTPPSVY 133
Query: 234 QRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH 275
+TGS+ + CLV+G+ +T + SL S H
Sbjct: 134 PLAPGCGDTTGSSVTLGCLVKGYFPESVTVTWNSGSLSSSVH 175
>pdb|2CQV|A Chain A, Solution Structure Of The Eighth Ig-Like Domain Of Human
Myosin Light Chain Kinase
Length = 114
Score = 33.9 bits (76), Expect = 0.46, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 3/99 (3%)
Query: 134 NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT--- 190
+G P+++ P D + AG SVE+ K G +W K + E + K+ +
Sbjct: 3 SGSSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENG 62
Query: 191 GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAP 229
L + + G Y N LG A+ LTV P
Sbjct: 63 SKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKP 101
Score = 33.5 bits (75), Expect = 0.55, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 5/113 (4%)
Query: 318 NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT--- 374
+G P+++ P D + AG SVE+ K G +W K + E + K+ +
Sbjct: 3 SGSSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENG 62
Query: 375 GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSA 427
L + + G Y N LG A+ LTV + +P T PS+
Sbjct: 63 SKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVV--DKPDPPAGTPSGPSS 113
>pdb|4FFV|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFV|H Chain H, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFW|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
pdb|4FFW|H Chain H, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
Length = 217
Score = 33.9 bits (76), Expect = 0.48, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 190 TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT------GAPPIFIQRPVSTTYST 243
T ++L ++ +DS +Y CT + DV TVT AP ++ PV +T
Sbjct: 78 TAYIQLNSLTSEDSAVYYCTRFRDVFFDVWGTGTTVTVSSAKTTAPSVYPLAPVCGG-TT 136
Query: 244 GSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
GS+ + CLV+G+ P P +TW + SL S H
Sbjct: 137 GSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 168
>pdb|2LU7|A Chain A, Solution Nmr Structure Of Ig Like Domain (1277-1357) Of
Obscurin-Like Protein 1 From Homo Sapiens, Northeast
Structural Genomics Consortium (Nesg) Target Hr8578d
Length = 84
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 77 MTWFHDGNSLDSDDHVTYEHDGF--VLVLNGVRESDAGVYNCVA 118
+ W+ DG L S V E G VL + G R DAG Y C A
Sbjct: 27 VRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDA 70
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 261 MTWFHDGNSLDSDDHVTYEHDGF--VLVLNGVRESDAGVYNCVA 302
+ W+ DG L S V E G VL + G R DAG Y C A
Sbjct: 27 VRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDA 70
>pdb|1YQV|H Chain H, The Crystal Structure Of The Antibody Fab Hyhel5 Complex
With Lysozyme At 1.7a Resolution
Length = 215
Score = 33.5 bits (75), Expect = 0.51, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Query: 174 KDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG-YLTVTGA---P 229
K +A F D + T ++L ++ +DSG+Y C N + +G LTV+ A P
Sbjct: 65 KGKATFTADTSSS---TAYMQLNSLTSEDSGVYYCLHGNYDFDGWGQGTTLTVSSAKTTP 121
Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
P + T S + CLV+G+ P P +TW + SL S H
Sbjct: 122 PSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTW--NSGSLSSGVH 167
>pdb|1E4W|H Chain H, Crossreactive Binding Of A Circularized Peptide To An
Anti- Tgfalpha Antibody Fab-Fragment
Length = 213
Score = 33.5 bits (75), Expect = 0.52, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 14/98 (14%)
Query: 186 KIHRTGSLRLYNIGPQDSGLYRC--TASNLLGEDVAEGYLTV----TGAPPIFIQRPVST 239
K T ++L ++ +DS +Y C + S+ G+ LTV T AP ++ PV
Sbjct: 74 KSSNTAYMQLSSLTSEDSAVYYCARSPSDYWGQGTT---LTVSSAKTTAPSVYPLAPVCG 130
Query: 240 TYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
+TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 131 D-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 165
Score = 29.6 bits (65), Expect = 7.7, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 12/99 (12%)
Query: 1 TDDRRSSTE-LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVN-----APPIFIQRPVS 54
T D+ S+T + +S + E Y C A +P+ + +TV+ AP ++ PV
Sbjct: 71 TVDKSSNTAYMQLSSLTSEDSAVYYC-ARSPSDYWGQGTTLTVSSAKTTAPSVYPLAPVC 129
Query: 55 TTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 91
+TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 130 GD-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 165
>pdb|3E8U|H Chain H, Crystal Structure And Thermodynamic Analysis Of Diagnostic
Fab 106.3 Complexed With Bnp 5-13 (C10a) Reveal Basis Of
Selective Molecular Recognition
Length = 217
Score = 33.5 bits (75), Expect = 0.53, Method: Composition-based stats.
Identities = 48/170 (28%), Positives = 72/170 (42%), Gaps = 37/170 (21%)
Query: 140 RLVVKPFDMRAPAGSSVEIPCKPDGEPLPR--ISW-----SKD------------EAEFV 180
+LV ++R P G +V+I CK G I+W SKD E +
Sbjct: 3 QLVQSGPELRKP-GETVKISCKGSGYTFTHYGINWVKQTPSKDLKWMGWINTHTGEPIYA 61
Query: 181 EDRNHKIH-------RTGSLRLYNIGPQDSGLYRCTASNLLGEDV-AEGY-LTVTGA--- 228
+D + T L++ N+ D G Y CT S+ G D +G +TV+ A
Sbjct: 62 DDFKGRFAFSLETSANTAYLQINNLNNGDMGTYFCTRSHRFGLDYWGQGTSVTVSSAKTT 121
Query: 229 -PPIFIQRPVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
P ++ P S + S + CLV+G+ P P +TW + SL S H
Sbjct: 122 PPSVYPLAPGSAAAAAASMVTLGCLVKGYFPEPVTVTW--NSGSLSSGVH 169
>pdb|3O0R|H Chain H, Crystal Structure Of Nitric Oxide Reductase From
Pseudomonas Aeruginosa In Complex With Antibody Fragment
Length = 225
Score = 33.5 bits (75), Expect = 0.55, Method: Composition-based stats.
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 18/101 (17%)
Query: 190 TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG-------------APPIFIQRP 236
T + L ++ +DS +Y C+ S+L G V V G AP ++ P
Sbjct: 78 TAYMELSSLTNEDSAVYYCSRSSLDGYYVKNWCFDVWGQGTTVTVSSAKTTAPSVYPLAP 137
Query: 237 VSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
V +TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 138 VCGD-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 175
>pdb|2VAJ|A Chain A, Crystal Structure Of Ncam2 Ig1 (I4122 Cell Unit)
Length = 93
Score = 33.5 bits (75), Expect = 0.55, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAE-FVEDRNHKIHRTG---SLRLYNIGPQDSGLYRC 208
G S C GEP I W + E + + + + G L +YN +D+G+YRC
Sbjct: 15 GESKFFTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRC 73
Query: 209 TASNLLGE 216
A++ G+
Sbjct: 74 QATDAKGQ 81
Score = 33.5 bits (75), Expect = 0.55, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAE-FVEDRNHKIHRTG---SLRLYNIGPQDSGLYRC 392
G S C GEP I W + E + + + + G L +YN +D+G+YRC
Sbjct: 15 GESKFFTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRC 73
Query: 393 TASNLLGE 400
A++ G+
Sbjct: 74 QATDAKGQ 81
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 58 STGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEHDGFV--LVLNGVRESDAGVY 114
S G + TC G P + W++ G + S V + +G L + DAG+Y
Sbjct: 13 SVGESKFFTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIY 71
Query: 115 NCVAQNSEGSAESVAMI 131
C A +++G + ++
Sbjct: 72 RCQATDAKGQTQEATVV 88
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 242 STGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEHDGFV--LVLNGVRESDAGVY 298
S G + TC G P + W++ G + S V + +G L + DAG+Y
Sbjct: 13 SVGESKFFTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIY 71
Query: 299 NCVAQNSEGSAESVAMI 315
C A +++G + ++
Sbjct: 72 RCQATDAKGQTQEATVV 88
>pdb|1E4X|H Chain H, Crossreactive Binding Of A Circularized Peptide To An
Anti-Tgfalpha Antibody Fab-Fragment
Length = 217
Score = 33.5 bits (75), Expect = 0.57, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 14/98 (14%)
Query: 186 KIHRTGSLRLYNIGPQDSGLYRC--TASNLLGEDVAEGYLTV----TGAPPIFIQRPVST 239
K T ++L ++ +DS +Y C + S+ G+ LTV T AP ++ PV
Sbjct: 74 KSSNTAYMQLSSLTSEDSAVYYCARSPSDYWGQGTT---LTVSSAKTTAPSVYPLAPVCG 130
Query: 240 TYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
+TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 131 D-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 165
Score = 29.6 bits (65), Expect = 8.7, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 12/99 (12%)
Query: 1 TDDRRSSTE-LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVN-----APPIFIQRPVS 54
T D+ S+T + +S + E Y C A +P+ + +TV+ AP ++ PV
Sbjct: 71 TVDKSSNTAYMQLSSLTSEDSAVYYC-ARSPSDYWGQGTTLTVSSAKTTAPSVYPLAPVC 129
Query: 55 TTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 91
+TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 130 GD-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 165
>pdb|2EO1|A Chain A, Solution Structure Of The Ig Domain Of Human Obscn Protein
Length = 102
Score = 33.5 bits (75), Expect = 0.58, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV--LVLNGVRESDAGVYNCV 117
G+++ ++C V ++TW+ DG L S V E G LV+ +++AG Y+C
Sbjct: 26 GASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCE 84
Query: 118 A 118
A
Sbjct: 85 A 85
Score = 33.5 bits (75), Expect = 0.58, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV--LVLNGVRESDAGVYNCV 301
G+++ ++C V ++TW+ DG L S V E G LV+ +++AG Y+C
Sbjct: 26 GASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCE 84
Query: 302 A 302
A
Sbjct: 85 A 85
>pdb|3CLF|H Chain H, Hiv Neutralizing Monoclonal Antibody Yz23
Length = 220
Score = 33.5 bits (75), Expect = 0.61, Method: Composition-based stats.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 12/99 (12%)
Query: 186 KIHRTGSLRLYNIGPQDSGLYRCTASNL-LGEDV-AEG-YLTV----TGAPPIFIQRPVS 238
K T ++L ++ +DS +Y C L LG D +G LTV T AP ++ PV
Sbjct: 74 KSSSTAYMQLSSLTSEDSAVYFCARGRLSLGFDYWGQGSTLTVSSAKTTAPSVYPLAPVC 133
Query: 239 TTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
+TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 134 GD-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 169
>pdb|1CR9|H Chain H, Crystal Structure Of The Anti-Prion Fab 3f4
pdb|1CU4|H Chain H, Crystal Structure Of The Anti-Prion Fab 3f4 In Complex
With Its Peptide Epitope
Length = 217
Score = 33.5 bits (75), Expect = 0.62, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 12/96 (12%)
Query: 187 IHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY-LTV----TGAPPIFIQRPVSTTY 241
+ T L+L ++ +D+ +Y C A L + +G LTV T AP ++ PV
Sbjct: 75 LSNTAYLQLSSLTSEDTAVYYCNAD--LHDYWGQGTTLTVSSAKTTAPSVYPLAPVCGD- 131
Query: 242 STGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
+TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 132 TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 165
>pdb|2E6P|A Chain A, Solution Structure Of The Ig-Like Domain (714-804) From
Human Obscurin-Like Protein 1
Length = 104
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 43 NAPPIFIQRP---VSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG- 98
++ P+ I P VS T++T +TC + P TW+ DG ++ + + + DG
Sbjct: 5 SSGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGR 63
Query: 99 -FVLVLNGVRESDAGVYNC 116
L+L + D+G + C
Sbjct: 64 KHRLILPEAKVQDSGEFEC 82
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 230 PIFIQRP---VSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG--FV 284
P+ I P VS T++T +TC + P TW+ DG ++ + + + DG
Sbjct: 8 PVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGRKHR 66
Query: 285 LVLNGVRESDAGVYNC 300
L+L + D+G + C
Sbjct: 67 LILPEAKVQDSGEFEC 82
>pdb|2IFF|H Chain H, Structure Of An Antibody-Lysozyme Complex: Effect Of A
Conservative Mutation
pdb|1BQL|H Chain H, Structure Of An Anti-Hel Fab Fragment Complexed With
Bobwhite Quail Lysozyme
Length = 215
Score = 33.5 bits (75), Expect = 0.62, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Query: 174 KDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG-YLTVTGA---P 229
K +A F D + T ++L ++ +DSG+Y C N + +G LTV+ A P
Sbjct: 65 KGKATFTADTSSS---TAYMQLNSLTSEDSGVYYCLHGNYDFDGWGQGTTLTVSSAKTTP 121
Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
P + T S + CLV+G+ P P +TW + SL S H
Sbjct: 122 PSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTW--NSGSLSSGVH 167
>pdb|3CLE|H Chain H, Hiv Neutralizing Monoclonal Antibody Yz23
Length = 220
Score = 33.5 bits (75), Expect = 0.63, Method: Composition-based stats.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 12/99 (12%)
Query: 186 KIHRTGSLRLYNIGPQDSGLYRCTASNL-LGEDV-AEG-YLTV----TGAPPIFIQRPVS 238
K T ++L ++ +DS +Y C L LG D +G LTV T AP ++ PV
Sbjct: 74 KSSSTAYMQLSSLTSEDSAVYFCARGRLSLGFDYWGQGSTLTVSSAKTTAPSVYPLAPVC 133
Query: 239 TTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
+TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 134 GD-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 169
>pdb|1HNF|A Chain A, Crystal Structure Of The Extracellular Region Of The Human
Cell Adhesion Molecule Cd2 At 2.5 Angstroms Resolution
Length = 182
Score = 33.5 bits (75), Expect = 0.64, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 172 WSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPI 231
+ K++ F E +K+ + G+L++ ++ D +Y+ + + G++V E +
Sbjct: 47 FRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLK----- 101
Query: 232 FIQRPVSTTYSTGS--TSRITCLVEGHPLPQMTWFHDGNSL 270
IQ VS + + + +TC V P++ + DG L
Sbjct: 102 -IQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHL 141
>pdb|4EXP|X Chain X, Structure Of Mouse Interleukin-34 In Complex With Mouse
Fms
Length = 283
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 43/116 (37%), Gaps = 9/116 (7%)
Query: 202 DSGLYRCTASNLLGEDVAEG-YLTVTGA---PPIFIQRPVSTTYSTGSTSRITCLVEGHP 257
DS Y C E + G +L V PP P G ++I C
Sbjct: 155 DSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAE 214
Query: 258 LPQMTWFHDGNS-----LDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 308
+ G++ L+SD Y L LN V DAG+Y+CVA N G+
Sbjct: 215 VGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGT 270
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 86 LDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 124
L+SD Y L LN V DAG+Y+CVA N G+
Sbjct: 232 LNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGT 270
>pdb|3EJJ|X Chain X, Structure Of M-Csf Bound To The First Three Domains Of Fms
Length = 289
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 86 LDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 124
L+SD Y L LN V DAG+Y+CVA N G+
Sbjct: 232 LNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGT 270
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 270 LDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 308
L+SD Y L LN V DAG+Y+CVA N G+
Sbjct: 232 LNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGT 270
>pdb|1EGJ|H Chain H, Domain 4 Of The Beta Common Chain In Complex With An
Antibody
Length = 220
Score = 33.1 bits (74), Expect = 0.65, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 21/104 (20%)
Query: 186 KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY--------LTV----TGAPPIFI 233
K T S++L + +DS +Y C+ G+ + G+ +TV T AP ++
Sbjct: 74 KSSSTASMQLSRLTSEDSAVYYCSR----GDGIHGGFAYWGQGTTVTVSSAKTTAPSVYP 129
Query: 234 QRPVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
PV +TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 130 LAPVCGD-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 170
Score = 29.6 bits (65), Expect = 7.5, Method: Composition-based stats.
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 19/105 (18%)
Query: 1 TDDRRSST-ELVISGVQREHGGRYSCVAGNPAGVYRGDLH------VTVN-----APPIF 48
T D+ SST + +S + E Y C G+ G++ G + VTV+ AP ++
Sbjct: 71 TVDKSSSTASMQLSRLTSEDSAVYYCSRGD--GIHGGFAYWGQGTTVTVSSAKTTAPSVY 128
Query: 49 IQRPVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 91
PV +TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 129 PLAPVCGD-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 170
>pdb|1E4X|I Chain I, Crossreactive Binding Of A Circularized Peptide To An
Anti-Tgfalpha Antibody Fab-Fragment
Length = 217
Score = 33.1 bits (74), Expect = 0.67, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 14/98 (14%)
Query: 186 KIHRTGSLRLYNIGPQDSGLYRC--TASNLLGEDVAEGYLTV----TGAPPIFIQRPVST 239
K T ++L ++ +DS +Y C + S+ G+ LTV T AP ++ PV
Sbjct: 74 KSSNTAYMQLSSLTSEDSAVYYCARSPSDYWGQGTT---LTVSSAKTTAPSVYPLAPVCG 130
Query: 240 TYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
+TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 131 D-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 165
Score = 29.3 bits (64), Expect = 9.7, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 12/99 (12%)
Query: 1 TDDRRSSTE-LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVN-----APPIFIQRPVS 54
T D+ S+T + +S + E Y C A +P+ + +TV+ AP ++ PV
Sbjct: 71 TVDKSSNTAYMQLSSLTSEDSAVYYC-ARSPSDYWGQGTTLTVSSAKTTAPSVYPLAPVC 129
Query: 55 TTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 91
+TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 130 GD-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 165
>pdb|1NDG|B Chain B, Crystal Structure Of Fab Fragment Of Antibody Hyhel-8
Complexed With Its Antigen Lysozyme
Length = 210
Score = 33.1 bits (74), Expect = 0.72, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 12/90 (13%)
Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV-----TGAPPIFIQRPVSTTYSTGSTS 247
L+L ++ +D+ Y C +N G EG L T AP ++ PV +TGS+
Sbjct: 80 LQLSSVTTEDTATYYC--ANWDGTYWGEGTLVTVSAAKTTAPSVYPLAPVCGD-TTGSSV 136
Query: 248 RITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
+ CLV+G+ P P +TW + SL S H
Sbjct: 137 TLGCLVKGYFPEPVTLTW--NSGSLSSGVH 164
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 13/98 (13%)
Query: 2 DDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGD-LHVTVNA-----PPIFIQRPVST 55
D ++ L +S V E Y C N G Y G+ VTV+A P ++ PV
Sbjct: 72 DTSKNQHYLQLSSVTTEDTATYYC--ANWDGTYWGEGTLVTVSAAKTTAPSVYPLAPVCG 129
Query: 56 TYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 91
+TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 130 D-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 164
>pdb|1FOR|H Chain H, Structure Determination Of An Fab Fragment That
Neutralizes Human Rhinovirus And Analysis Of The
Fab-Virus Complex
Length = 219
Score = 33.1 bits (74), Expect = 0.72, Method: Composition-based stats.
Identities = 42/162 (25%), Positives = 66/162 (40%), Gaps = 45/162 (27%)
Query: 153 GSSVEIPCKPDG-------------EPLPRISWS----------------KDEAEFVEDR 183
GSSV+I CK G P + W K +A D+
Sbjct: 15 GSSVKISCKASGYAFSSFWVNWVKQRPGQGLEWIGQIYPGDGDNKYNGKFKGKATLTADK 74
Query: 184 NHKIHRTGSLRLYNIGPQDSGLYRCTAS-------NLLGEDVAEGYLTV-TGAPPIFIQR 235
+ T ++LY++ +DS +Y C S + G+ + + T AP ++
Sbjct: 75 SST---TAYMQLYSLTSEDSAVYFCARSGNYPYAMDYWGQGTSVTVSSAKTTAPSVYPLA 131
Query: 236 PVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
PV +TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 132 PVCGG-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 170
>pdb|3MJ7|B Chain B, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
Length = 225
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 3/134 (2%)
Query: 2 DDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGS 61
D + + ++ +Q G Y C GV +TV P + V + G+
Sbjct: 80 DVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGN 139
Query: 62 TSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN 120
++ C + LP Q W +S E V+ + +G Y+C QN
Sbjct: 140 DFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQN 199
Query: 121 SEGSAESVAMIRIN 134
GS + M+R++
Sbjct: 200 RVGSDQ--CMLRLD 211
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 16/123 (13%)
Query: 103 LNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRA------PAGSSV 156
+ ++ SD G Y C + + G A ++ + +VKP R G+
Sbjct: 90 VTNLQLSDIGTYQCKVKKAPGVANKKFLLTV--------LVKPSGTRCFVDGSEEIGNDF 141
Query: 157 EIPCKPDGEPLP-RISWSK-DEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLL 214
++ C+P LP + W K +++ + + + + N + SG Y CT N +
Sbjct: 142 KLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRV 201
Query: 215 GED 217
G D
Sbjct: 202 GSD 204
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 16/123 (13%)
Query: 287 LNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRA------PAGSSV 340
+ ++ SD G Y C + + G A ++ + +VKP R G+
Sbjct: 90 VTNLQLSDIGTYQCKVKKAPGVANKKFLLTV--------LVKPSGTRCFVDGSEEIGNDF 141
Query: 341 EIPCKPDGEPLP-RISWSK-DEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLL 398
++ C+P LP + W K +++ + + + + N + SG Y CT N +
Sbjct: 142 KLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRV 201
Query: 399 GED 401
G D
Sbjct: 202 GSD 204
>pdb|2DDQ|H Chain H, Crystal Structure Of The Fab Fragment Of A R310 Antibody
Complexed With (R)-Hne-Histidine Adduct
Length = 213
Score = 33.1 bits (74), Expect = 0.77, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 15/100 (15%)
Query: 1 TDDRRSSTELV-ISGVQREHGGRYSCVAGNPAGVYRGD-LHVTVN-----APPIFIQRPV 53
T D+ SST + +S + E Y C P G Y G VTV+ AP ++ PV
Sbjct: 71 TSDKSSSTAYMELSSLTSEDSAVYYCA---PYGGYWGQGTTVTVSSAKTTAPSVYPLAPV 127
Query: 54 STTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 91
+TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 128 CGD-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 164
Score = 30.0 bits (66), Expect = 6.6, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 174 KDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTA-SNLLGEDVAEGYLTV-TGAPPI 231
K +A D++ T + L ++ +DS +Y C G+ + T AP +
Sbjct: 65 KGKATLTSDKSSS---TAYMELSSLTSEDSAVYYCAPYGGYWGQGTTVTVSSAKTTAPSV 121
Query: 232 FIQRPVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
+ PV +TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 122 YPLAPVCGD-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 164
>pdb|1PKQ|B Chain B, Myelin Oligodendrocyte Glycoprotein-(8-18c5) Fab-Complex
pdb|1PKQ|G Chain G, Myelin Oligodendrocyte Glycoprotein-(8-18c5) Fab-Complex
Length = 252
Score = 32.7 bits (73), Expect = 0.85, Method: Composition-based stats.
Identities = 43/176 (24%), Positives = 67/176 (38%), Gaps = 44/176 (25%)
Query: 127 SVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPR--ISWSKDE-------- 176
+VA + H + +VKP G+SVEI CK G I W K
Sbjct: 17 TVAQAEVKLHESGAGLVKP-------GASVEISCKATGYTFSSFWIEWVKQRPGHGLEWI 69
Query: 177 AEFVEDR-----NHKIH-----------RTGSLRLYNIGPQDSGLYRCTASNLL------ 214
E + R N K T ++L ++ +DS +Y C N +
Sbjct: 70 GEILPGRGRTNYNEKFKGKATFTAETSSNTAYMQLSSLTSEDSAVYYCATGNTMVNMPYW 129
Query: 215 --GEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGH-PLPQMTWFHDG 267
G V + G P +F P S + ++G T+ + CLV+ + P P ++ G
Sbjct: 130 GQGTTVTVSSASTKG-PSVFPLAPSSKS-TSGGTAALGCLVKDYFPEPVTVSWNSG 183
>pdb|3QUM|H Chain H, Crystal Structure Of Human Prostate Specific Antigen (Psa)
In Fab Sandwich With A High Affinity And A Pca Selective
Antibody
pdb|3QUM|K Chain K, Crystal Structure Of Human Prostate Specific Antigen (Psa)
In Fab Sandwich With A High Affinity And A Pca Selective
Antibody
Length = 219
Score = 32.7 bits (73), Expect = 0.85, Method: Composition-based stats.
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 11/109 (10%)
Query: 174 KDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTAS------NLLGEDVAEGYLTV-T 226
KD+A D++ T ++L ++ DS +Y C + G+ + + T
Sbjct: 65 KDKATLTVDKSSS---TAYMQLSSLTSVDSAVYFCARDGYRYYFDYWGQGTSVTVSSAKT 121
Query: 227 GAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH 275
APP++ PV +TGS+ + CLV+G+ +T + SL S H
Sbjct: 122 TAPPVYPLAPVCGD-TTGSSVTLGCLVKGYFPESVTLLWNSGSLSSGVH 169
>pdb|4HWU|A Chain A, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse
Fibroblast Growth Factor Receptor 2 (Fgfr2)
[nysgrc-005912]
pdb|4HWU|B Chain B, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse
Fibroblast Growth Factor Receptor 2 (Fgfr2)
[nysgrc-005912]
Length = 95
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTAS 211
G S+E+ C + ISW+KD + N + L++ P+DSGLY CTA+
Sbjct: 16 GESLELQCMLKDAAV--ISWTKDGVHLGPN-NRTVLIGEYLQIKGATPRDSGLYACTAA 71
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTAS 395
G S+E+ C + ISW+KD + N + L++ P+DSGLY CTA+
Sbjct: 16 GESLELQCMLKDAAV--ISWTKDGVHLGPN-NRTVLIGEYLQIKGATPRDSGLYACTAA 71
>pdb|1T66|H Chain H, The Structure Of Fab With Intermediate Affinity For
Fluorescein.
pdb|1T66|D Chain D, The Structure Of Fab With Intermediate Affinity For
Fluorescein
Length = 220
Score = 32.7 bits (73), Expect = 0.91, Method: Composition-based stats.
Identities = 44/168 (26%), Positives = 68/168 (40%), Gaps = 40/168 (23%)
Query: 115 NCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSK 174
N V Q+ E E VA IR KP++ SV+ R + S+
Sbjct: 35 NWVRQSPEKGLEWVAQIR----------NKPYNYETYYSDSVK----------GRFTISR 74
Query: 175 DEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV-----TGAP 229
D+++ + L++ N+ +D G+Y CT+ G +G L T AP
Sbjct: 75 DDSK----------SSVYLQMNNLRAEDMGIYYCTSYGYHGAYWGQGTLVTVSAAKTTAP 124
Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
++ P T S + CLV+G+ P P +TW + SL S H
Sbjct: 125 SVYPLAP-GTAALKSSMVTLGCLVKGYFPEPVTVTW--NSGSLSSGVH 169
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 2 DDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGD-LHVTVN-----APPIFIQRPVST 55
DD +SS L ++ ++ E G Y C + G Y G VTV+ AP ++ P T
Sbjct: 75 DDSKSSVYLQMNNLRAEDMGIYYCTSYGYHGAYWGQGTLVTVSAAKTTAPSVYPLAP-GT 133
Query: 56 TYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 91
S + CLV+G+ P P +TW + SL S H
Sbjct: 134 AALKSSMVTLGCLVKGYFPEPVTVTW--NSGSLSSGVH 169
>pdb|1IGI|H Chain H, 26-10 Fab:digoxin Complex-Affinity And Specificity Due To
Surface Complementarity
pdb|1IGJ|B Chain B, 26-10 Fab:digoxin Complex-Affinity And Specificity Due To
Surface Complementarity
pdb|1IGJ|D Chain D, 26-10 Fab:digoxin Complex-Affinity And Specificity Due To
Surface Complementarity
Length = 218
Score = 32.7 bits (73), Expect = 0.92, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 17/102 (16%)
Query: 186 KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY------LTV----TGAPPIFIQR 235
K T + L ++ +DS +Y C S+ G A Y +TV T AP ++
Sbjct: 74 KSSSTAYMELRSLTSEDSAVYYCAGSS--GNKWAMDYWGHGASVTVSSAKTTAPSVYPLA 131
Query: 236 PVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
PV +TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 132 PVCGD-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 170
>pdb|2E7C|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Myosin-Binding Protein C, Fast-Type
Length = 118
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Query: 45 PPIFIQRPVSTTY--STGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD-HV-TYEHDGFV 100
P I + R + TY G + +G P PQ+ W G LD+ HV T + D
Sbjct: 22 PKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVF 81
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
V R SD+G Y Q + IR+
Sbjct: 82 FVRQAAR-SDSGEYELSVQIENMKDTATIRIRV 113
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Query: 229 PPIFIQRPVSTTY--STGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD-HV-TYEHDGFV 284
P I + R + TY G + +G P PQ+ W G LD+ HV T + D
Sbjct: 22 PKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVF 81
Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
V R SD+G Y Q + IR+
Sbjct: 82 FVRQAAR-SDSGEYELSVQIENMKDTATIRIRV 113
>pdb|1YEC|H Chain H, Structure Of A Catalytic Antibody Igg2a Fab Fragment
(D2.3)
pdb|1YEF|H Chain H, Structure Of Igg2a Fab Fragment (D2.3) Complexed With
Substrate Analogue
pdb|1YEG|H Chain H, Structure Of Igg2a Fab Fragment (D2.3) Complexed With
Reaction Product
pdb|1YEH|H Chain H, Structure Of Igg2a Fab Fragment
pdb|1YEI|H Chain H, Catalytic Antibody D2.3 Complex
pdb|1YEK|H Chain H, Catalytic Antibody D2.3 Complex
pdb|1YEJ|H Chain H, Catalytic Antibody Complex
pdb|1KN2|H Chain H, Catalytic Antibody D2.3 Complex
pdb|1KN4|H Chain H, Catalytic Antibody D2.3 Complex
Length = 222
Score = 32.7 bits (73), Expect = 0.94, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 20/116 (17%)
Query: 174 KDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLG--EDVAEGY------LTV 225
K +A D++ T ++L + +DS +Y CT + ED Y +TV
Sbjct: 65 KGKATLTADKSSS---TAYMQLSTLKSEDSAVYFCTRWGFIPVREDYVMDYWGQGTLVTV 121
Query: 226 ----TGAPPIFIQRPVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
T AP ++ PV +TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 122 SSAKTTAPSVYPLAPVCGD-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 174
>pdb|2C1O|B Chain B, Enaiihis Fab Fragment In The Free Form
pdb|2C1O|H Chain H, Enaiihis Fab Fragment In The Free Form
Length = 218
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 11/109 (10%)
Query: 174 KDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGA----P 229
KD+A DR+ T ++L + +DS +Y C + G +G L A P
Sbjct: 65 KDKATLTVDRSSS---TAYIQLSSPTSEDSAVYYCARDDYDGAFWGQGTLVTVSAAKTTP 121
Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDHV 276
P + T S + CLV+G+ P P +TW + SL S H
Sbjct: 122 PSVYPLAPGSAAQTNSMVTLGCLVKGYFPAPVTVTW--NSGSLSSGVHT 168
>pdb|3TT1|H Chain H, Crystal Structure Of Leut In The Outward-Open Conformation
In Complex With Fab
pdb|3TT1|I Chain I, Crystal Structure Of Leut In The Outward-Open Conformation
In Complex With Fab
Length = 219
Score = 32.7 bits (73), Expect = 0.98, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 15/102 (14%)
Query: 186 KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY------LTV----TGAPPIFIQR 235
K R+ ++L ++ +DS +Y C + A Y +TV T AP ++
Sbjct: 74 KSSRSAYMQLSSLTSEDSAVYFCARRTVTMGRYAMDYWGQGTSVTVSSAKTTAPSVYPLA 133
Query: 236 PVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
PV +TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 134 PVCGD-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 172
>pdb|2C1P|B Chain B, Fab-Fragment Of Enantioselective Antibody Complexed With
Finrozole
pdb|2C1P|H Chain H, Fab-Fragment Of Enantioselective Antibody Complexed With
Finrozole
Length = 217
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 11/108 (10%)
Query: 174 KDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGA----P 229
KD+A DR+ T ++L + +DS +Y C + G +G L A P
Sbjct: 64 KDKATLTVDRSSS---TAYIQLSSPTSEDSAVYYCARDDYDGAFWGQGTLVTVSAAKTTP 120
Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
P + T S + CLV+G+ P P +TW + SL S H
Sbjct: 121 PSVYPLAPGSAAQTNSMVTLGCLVKGYFPAPVTVTW--NSGSLSSGVH 166
>pdb|1SBS|H Chain H, Crystal Structure Of An Anti-Hcg Fab
Length = 222
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 13/94 (13%)
Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGY------LTVTGA---PPIFIQRPVSTTYST 243
L++ N+ +D+G+Y CT D A Y +TV+ A PP + T
Sbjct: 83 LQMNNLRAEDTGIYYCTRGAYYRYDYAMDYWGQGTSVTVSSAKTTPPSVYPLAPGSAAQT 142
Query: 244 GSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
S + CLV+G+ P P +TW + SL S H
Sbjct: 143 NSMVTLGCLVKGYFPEPVTVTW--NSGSLSSGVH 174
Score = 30.0 bits (66), Expect = 6.2, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 45/105 (42%), Gaps = 20/105 (19%)
Query: 2 DDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDL---------HVTVNA----PPIF 48
DD +SS L ++ ++ E G Y C G YR D VTV++ PP
Sbjct: 75 DDSKSSVYLQMNNLRAEDTGIYYCTRG---AYYRYDYAMDYWGQGTSVTVSSAKTTPPSV 131
Query: 49 IQRPVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 91
+ T S + CLV+G+ P P +TW + SL S H
Sbjct: 132 YPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTW--NSGSLSSGVH 174
>pdb|4G6F|H Chain H, Crystal Structure Of 10e8 Fab In Complex With An Hiv-1
Gp41 Peptide
pdb|4G6F|B Chain B, Crystal Structure Of 10e8 Fab In Complex With An Hiv-1
Gp41 Peptide
Length = 236
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 65/154 (42%), Gaps = 32/154 (20%)
Query: 148 MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS-----LRLYNIGPQD 202
+R P G +E + G P WS D A VE R I R S L + N+ +D
Sbjct: 37 VRQPPGKGLEWVGRITG---PGEGWSVDYAAPVEGR-FTISRLNSINFLYLEMNNLRMED 92
Query: 203 SGLYRCTASNLLGEDVAEGY---------------LTVTGA----PPIFIQRPVSTTYST 243
SGLY C + D GY +TV+ A P +F P S + ++
Sbjct: 93 SGLYFCARTGKY-YDFWSGYPPGEEYFQDWGRGTLVTVSSASTKGPSVFPLAPSSKS-TS 150
Query: 244 GSTSRITCLVEGH-PLPQMTWFHDGNSLDSDDHV 276
G T+ + CLV+ + P P ++ G +L S H
Sbjct: 151 GGTAALGCLVKDYFPEPVTVSWNSG-ALTSGVHT 183
>pdb|3NZH|H Chain H, Crystal Structure Of Anti-Emmprin Antibody 5f6 Fab
Length = 226
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 11/82 (13%)
Query: 193 LRLYNIGPQDSGLYRCT--ASNLLGEDVAEGYLTVTGA----PPIFIQRPVSTTYSTGST 246
L++ N+ +D+G+Y CT S+ G+ LTV+ A P +F P S + ++G T
Sbjct: 84 LQMNNLRAEDTGIYYCTPDGSDYWGQGTT---LTVSSASTKGPSVFPLAPSSKS-TSGGT 139
Query: 247 SRITCLVEGH-PLPQMTWFHDG 267
+ + CLV+ + P P ++ G
Sbjct: 140 AALGCLVKDYFPEPVTVSWNSG 161
>pdb|4HHR|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
pdb|4HHS|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
Length = 652
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 573 LDLAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLARE 612
+DLAA+ I R R+ +P YN +R + +EDL +
Sbjct: 489 VDLAALEIYRDRERSVPRYNEFRRSMFMIPITKWEDLTED 528
>pdb|1PZ5|B Chain B, Structural Basis Of Peptide-Carbohydrate Mimicry In An
Antibody Combining Site
Length = 220
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
Query: 2 DDRRSSTELVISGVQREHGGRYSCVAGNPAGV--YRGD------LHVTVNAPPIFIQRPV 53
DD +SS L ++ ++ E G Y C G G Y G T AP ++ P
Sbjct: 75 DDSKSSVYLQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVP- 133
Query: 54 STTYSTGSTSRITCLVEGH-PLP 75
+ ++GS+ + CLV+G+ P P
Sbjct: 134 GCSDTSGSSVTLGCLVKGYFPEP 156
Score = 30.4 bits (67), Expect = 5.3, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT-------VTGAPPIFIQRPVSTTYSTGS 245
L++ N+ +D+G+Y CT +G G T T AP ++ P + ++GS
Sbjct: 83 LQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVP-GCSDTSGS 141
Query: 246 TSRITCLVEGH-PLP 259
+ + CLV+G+ P P
Sbjct: 142 SVTLGCLVKGYFPEP 156
>pdb|1GL4|B Chain B, Nidogen-1 G2PERLECAN IG3 COMPLEX
Length = 98
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 191 GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
G L + N+ P D+G Y CT SN+ D L V
Sbjct: 62 GILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 375 GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
G L + N+ P D+G Y CT SN+ D L V
Sbjct: 62 GILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96
>pdb|2FBO|J Chain J, Crystal Structure Of The Two Tandem V-Type Regions Of
Vcbp3 (V-Region-Containing Chitin Binding Protein) To
1.85 A
Length = 250
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 64/177 (36%), Gaps = 45/177 (25%)
Query: 147 DMRAPAGSSVEIPCK----PDGEPLPRISWSKDEA-------------------EFVEDR 183
++ AG +VE+PC D +P P ISW K + FVE
Sbjct: 11 EVEVHAGGTVELPCSYQLANDTQP-PVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESD 69
Query: 184 NHK------IHRTG-------SLRLYNIGPQDSGLYRCTASNL-----LGEDVAEGYLTV 225
++K + R +LRL ++ PQD G Y C + G D L V
Sbjct: 70 SYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKV 129
Query: 226 TGAPP---IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE 279
TG P + + G+ +TC +TW+ ++ + TY+
Sbjct: 130 TGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQ 186
>pdb|4AM0|A Chain A, Structure Of Dengue Virus Strain 4 Diii In Complex With
Fab 2h12
pdb|4AM0|C Chain C, Structure Of Dengue Virus Strain 4 Diii In Complex With
Fab 2h12
pdb|4AM0|E Chain E, Structure Of Dengue Virus Strain 4 Diii In Complex With
Fab 2h12
pdb|4AM0|H Chain H, Structure Of Dengue Virus Strain 4 Diii In Complex With
Fab 2h12
Length = 217
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 190 TGSLRLYNIGPQDSGLYRCT-----ASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTG 244
T ++L ++ +DS +Y CT A + G+ + + PP + +TG
Sbjct: 78 TAYMQLSSLTSEDSAVYYCTRGGSHAMDYWGQGTSVTVSSAKTTPPSVYPLAPGSADTTG 137
Query: 245 STSRITCLVEGHPLPQMTWFHDGNSLDSDDH 275
S+ + CLV+G+ +T + SL S H
Sbjct: 138 SSVTLGCLVKGYFPESVTVTWNSGSLSSSVH 168
>pdb|2Y6S|D Chain D, Structure Of An Ebolavirus-Protective Antibody In Complex
With Its Mucin-Domain Linear Epitope
pdb|2Y6S|H Chain H, Structure Of An Ebolavirus-Protective Antibody In Complex
With Its Mucin-Domain Linear Epitope
Length = 213
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 38/152 (25%), Positives = 59/152 (38%), Gaps = 31/152 (20%)
Query: 153 GSSVEIPCKPDGEPLPR--ISWSK-----------------DEAEFVED-------RNHK 186
G+SV++ CK G ISW K D + E+ K
Sbjct: 15 GASVKMSCKASGYTFTDYVISWVKQRTGQGLEWIGEFYPGTDSTYYTENFKGRATLTADK 74
Query: 187 IHRTGSLRLYNIGPQDSGLYRC-TASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGS 245
+T ++L ++ +DS +Y C TA + G+ + PP + T S
Sbjct: 75 SSKTAYMQLSSLTSEDSAVYFCATAFDYWGQGTTLTVSSAATTPPSVYPLAPGSAAQTNS 134
Query: 246 TSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
+ CLV+G+ P P +TW + SL S H
Sbjct: 135 MVTLGCLVKGYFPEPVTVTW--NSGSLSSGVH 164
>pdb|1M71|B Chain B, Crystal Structure Of A Monoclonal Fab Specific For
Shigella Flexneri Y Lipopolysaccharide
pdb|1M7D|B Chain B, Crystal Structure Of A Monoclonal Fab Specific For
Shigella Flexneri Y Lipopolysaccharide Complexed With A
Trisaccharide
pdb|1M7I|B Chain B, Crystal Structure Of A Monoclonal Fab Specific For
Shigella Flexneri Y Lipopolysaccharide Complexed With A
Pentasaccharide
Length = 220
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
Query: 2 DDRRSSTELVISGVQREHGGRYSCVAGNPAGV--YRGD------LHVTVNAPPIFIQRPV 53
DD +SS L ++ ++ E G Y C G G Y G T AP ++ P
Sbjct: 75 DDSKSSVYLQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVP- 133
Query: 54 STTYSTGSTSRITCLVEGH-PLP 75
+ ++GS+ + CLV+G+ P P
Sbjct: 134 GCSDTSGSSVTLGCLVKGYFPEP 156
Score = 30.0 bits (66), Expect = 5.8, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT-------VTGAPPIFIQRPVSTTYSTGS 245
L++ N+ +D+G+Y CT +G G T T AP ++ P + ++GS
Sbjct: 83 LQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVP-GCSDTSGS 141
Query: 246 TSRITCLVEGH-PLP 259
+ + CLV+G+ P P
Sbjct: 142 SVTLGCLVKGYFPEP 156
>pdb|2XQY|G Chain G, Crystal Structure Of Pseudorabies Core Fragment Of
Glycoprotein H In Complex With Fab D6.3
pdb|2XQY|J Chain J, Crystal Structure Of Pseudorabies Core Fragment Of
Glycoprotein H In Complex With Fab D6.3
Length = 261
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 45/158 (28%), Positives = 70/158 (44%), Gaps = 38/158 (24%)
Query: 153 GSSVEIPCKPDG-------------------EPLPRISWSKDEAEFVEDRNHKI------ 187
G+SV++ CK G E + RI S +E + +D K+
Sbjct: 21 GASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDK 80
Query: 188 -HRTGSLRLYNIGPQDSGLYRC-TASNLLGEDV-AEGY-LTV----TGAPPIFIQRPVST 239
T ++L ++ +DS +Y C + G D +G LTV T AP ++ PV
Sbjct: 81 SSSTVYIQLSSLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCG 140
Query: 240 TYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
+TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 141 D-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 175
>pdb|1ORQ|B Chain B, X-Ray Structure Of A Voltage-Dependent Potassium Channel
In Complex With An Fab
Length = 219
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 12/92 (13%)
Query: 193 LRLYNIGPQDSGLYRCT------ASNLLGEDVAEGYLTV-TGAPPIFIQRPVSTTYSTGS 245
L+L+++ +D+ Y CT A + G+ + + T AP ++ PV +TGS
Sbjct: 81 LQLHSVTTEDTATYSCTRGVDYFAMDYWGQGASVTVSSAKTTAPSVYPLAPVCGD-TTGS 139
Query: 246 TSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
+ + CLV+G+ P P +TW + SL S H
Sbjct: 140 SVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 169
>pdb|1JFQ|H Chain H, Antigen-Binding Fragment Of The Murine Anti-Phenylarsonate
Antibody 36-71, "fab 36-71"
Length = 222
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 43/161 (26%), Positives = 61/161 (37%), Gaps = 39/161 (24%)
Query: 152 AGSSVEIPCKPDGEPLPR--ISWSKDEA----EFVEDRN--------------------H 185
AGSSV++ CK G I+W K E++ N
Sbjct: 14 AGSSVKMSCKASGYTFTSNGINWVKQRPGQGLEWIGYNNPGNGYITYNEKFKGKTTLTVD 73
Query: 186 KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY------LTVTGA---PPIFIQRP 236
K T ++L ++ +DS +Y C S G Y LTV+ A PP
Sbjct: 74 KSSNTAYMQLRSLTSEDSAVYFCARSEYYGGSYKFDYWGQGTTLTVSSAGTTPPSVYPLA 133
Query: 237 VSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
+ T S + CLV+G+ P P +TW + SL S H
Sbjct: 134 PGSAAQTNSMVTLGCLVKGYFPEPVTVTW--NSGSLSSGVH 172
>pdb|3BSZ|H Chain H, Crystal Structure Of The Transthyretin-Retinol Binding
Protein-Fab Complex
pdb|3BSZ|N Chain N, Crystal Structure Of The Transthyretin-Retinol Binding
Protein-Fab Complex
Length = 215
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 190 TGSLRLYNIGPQDSGLYRCTAS--NLLGEDVAEG-YLTVTGA---PPIFIQRPVSTTYST 243
T + L ++ +DS +Y CT S + ED +G LTV+ A PP + T
Sbjct: 78 TAYMELSSLTNEDSAVYYCTRSGFDYGNEDWGQGTTLTVSSAKTTPPSVYPLAPGSAAQT 137
Query: 244 GSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
S + CLV+G+ P P +TW + SL S H
Sbjct: 138 NSMVTLGCLVKGYFPEPVTVTW--NSGSLSSGVH 169
>pdb|3QPX|L Chain L, Crystal Structure Of Fab C2507
Length = 213
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
Query: 2 DDRRSSTELVISGVQREHGGRYSCVAGNPAGVY----RGDLHVTVNAPPIFIQRPVSTTY 57
D S L IS +Q E Y C N + + DL TV AP +FI P
Sbjct: 65 DGSGSDYTLTISSLQPEDVATYFCQQYNSRDTFGAGTKLDLKRTVAAPSVFIFPPSDEQL 124
Query: 58 STGSTSRITCLVEGHPLPQMTWFHDGNSLDS 88
+G+ S + L +P + N+L S
Sbjct: 125 KSGTASVVCLLNNFYPREAKVQWKVDNALQS 155
>pdb|6FAB|H Chain H, Three-Dimensional Structure Of Murine Anti-P-
Azophenylarsonate Fab 36-71. 1. X-Ray Crystallography,
Site-Directed Mutagenesis, And Modeling Of The Complex
With Hapten
Length = 222
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 43/161 (26%), Positives = 61/161 (37%), Gaps = 39/161 (24%)
Query: 152 AGSSVEIPCKPDGEPLPR--ISWSKDEA----EFVEDRN--------------------H 185
AGSSV++ CK G I+W K E++ N
Sbjct: 14 AGSSVKMSCKASGYTFTSNGINWVKQRPGQGLEWIGYNNPGNGYIAYNEKFKGKTTLTVD 73
Query: 186 KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY------LTVTGA---PPIFIQRP 236
K T ++L ++ +DS +Y C S G Y LTV+ A PP
Sbjct: 74 KSSSTAYMQLRSLTSEDSAVYFCARSEYYGGSYKFDYWGQGTTLTVSSAKTTPPSVYPLA 133
Query: 237 VSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
+ T S + CLV+G+ P P +TW + SL S H
Sbjct: 134 PGSAAQTNSMVTLGCLVKGYFPEPVTVTW--NSGSLSSGVH 172
>pdb|3U0T|C Chain C, Fab-Antibody Complex
pdb|3U0T|A Chain A, Fab-Antibody Complex
Length = 219
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRG-----DLHVTVNAPPIFIQRPVSTTYSTGSTSR 64
L IS V+ E G Y C+ G V G ++ TV AP +FI P +G+ S
Sbjct: 78 LKISRVEAEDVGVYYCLQGTHYPVLFGQGTRLEIKRTVAAPSVFIFPPSDEQLKSGTASV 137
Query: 65 ITCLVEGHPLPQMTWFHDGNSLDSDD 90
+ L +P + N+L S +
Sbjct: 138 VCLLNNFYPREAKVQWKVDNALQSGN 163
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/185 (20%), Positives = 62/185 (33%), Gaps = 26/185 (14%)
Query: 94 YEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPA- 152
YE L ++ R +D+GV+ C A N+ GSA + + + + F M
Sbjct: 269 YERQA-TLTISSARVNDSGVFMCYANNTFGSANVTTTLEV----VDKGFINIFPMINTTV 323
Query: 153 ----GSSVEIPCKPDGEPLPR-ISWSKDEAEFVE--------DRNHKIHRTGSLRLYNIG 199
G +V++ + + P P W F + + I L L +
Sbjct: 324 FVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLK 383
Query: 200 PQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLP 259
+ G Y SN + V P I TY + C+ G P P
Sbjct: 384 GTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEIL-------TYDRLVNGMLQCVAAGFPEP 436
Query: 260 QMTWF 264
+ W+
Sbjct: 437 TIDWY 441
>pdb|1RJL|B Chain B, Structure Of The Complex Between Ospb-Ct And Bactericidal
Fab-H6831
Length = 221
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 12/102 (11%)
Query: 1 TDDRRSSTELV-ISGVQREHGGRYSCVAGNPAGVYRGD-----LHVTVN-----APPIFI 49
T D SST V +S + E Y C Y D VTV+ APP++
Sbjct: 71 TVDTSSSTAYVDLSSLTSEDSAVYYCARMRYGDYYAMDNWGQGTSVTVSSAKTTAPPVYP 130
Query: 50 QRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH 91
PV +TGS+ + CLV+G+ +T + SL S H
Sbjct: 131 LAPVCGD-TTGSSVTLGCLVKGYFPESVTLLWNSGSLSSGVH 171
Score = 30.8 bits (68), Expect = 4.1, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 226 TGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH 275
T APP++ PV +TGS+ + CLV+G+ +T + SL S H
Sbjct: 123 TTAPPVYPLAPVCGD-TTGSSVTLGCLVKGYFPESVTLLWNSGSLSSGVH 171
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/178 (20%), Positives = 60/178 (33%), Gaps = 25/178 (14%)
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPA-----GSS 155
L ++ R +D+GV+ C A N+ GSA + + + + F M G +
Sbjct: 250 LTISSARVNDSGVFMCYANNTFGSANVTTTLEV----VDKGFINIFPMINTTVFVNDGEN 305
Query: 156 VEIPCKPDGEPLPR-ISWSKDEAEFVE--------DRNHKIHRTGSLRLYNIGPQDSGLY 206
V++ + + P P W F + + I L L + + G Y
Sbjct: 306 VDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTY 365
Query: 207 RCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWF 264
SN + V P I TY + C+ G P P + W+
Sbjct: 366 TFLVSNSDVNAAIAFNVYVNTKPEIL-------TYDRLVNGMLQCVAAGFPEPTIDWY 416
>pdb|1XGU|B Chain B, Structure For Antibody Hyhel-63 Y33f Mutant Complexed With
Hen Egg Lysozyme
Length = 210
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 14/91 (15%)
Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT------GAPPIFIQRPVSTTYSTGST 246
L+L ++ +D+ Y C + G DV TVT AP ++ PV +TGS+
Sbjct: 80 LQLNSVTTEDTATYYCAS---WGGDVWGAGTTVTVSSAKTTAPSVYPLAPVCGD-TTGSS 135
Query: 247 SRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
+ CLV+G+ P P +TW + SL S H
Sbjct: 136 VTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 164
>pdb|1XGR|B Chain B, Structure For Antibody Hyhel-63 Y33i Mutant Complexed With
Hen Egg Lysozyme
Length = 210
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 14/91 (15%)
Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT------GAPPIFIQRPVSTTYSTGST 246
L+L ++ +D+ Y C + G DV TVT AP ++ PV +TGS+
Sbjct: 80 LQLNSVTTEDTATYYCAS---WGGDVWGAGTTVTVSSAKTTAPSVYPLAPVCGD-TTGSS 135
Query: 247 SRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
+ CLV+G+ P P +TW + SL S H
Sbjct: 136 VTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 164
>pdb|1XGT|B Chain B, Structure For Antibody Hyhel-63 Y33l Mutant Complexed With
Hen Egg Lysozyme
Length = 210
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 14/91 (15%)
Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT------GAPPIFIQRPVSTTYSTGST 246
L+L ++ +D+ Y C + G DV TVT AP ++ PV +TGS+
Sbjct: 80 LQLNSVTTEDTATYYCAS---WGGDVWGAGTTVTVSSAKTTAPSVYPLAPVCGD-TTGSS 135
Query: 247 SRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
+ CLV+G+ P P +TW + SL S H
Sbjct: 136 VTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 164
>pdb|1DQJ|B Chain B, Crystal Structure Of The Anti-Lysozyme Antibody Hyhel-63
Complexed With Hen Egg White Lysozyme
pdb|1DQM|H Chain H, Crystal Structure Of Anti-Lysozyme Antibody
pdb|1DQQ|B Chain B, Crystal Structure Of Anti-Lysozyme Antibody Hyhel-63
pdb|1DQQ|D Chain D, Crystal Structure Of Anti-Lysozyme Antibody Hyhel-63
pdb|1NBY|B Chain B, Crystal Structure Of Hyhel-63 Complexed With Hel Mutant
K96a
pdb|1NBZ|B Chain B, Crystal Structure Of Hyhel-63 Complexed With Hel Mutant
K97a
Length = 210
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 14/91 (15%)
Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT------GAPPIFIQRPVSTTYSTGST 246
L+L ++ +D+ Y C + G DV TVT AP ++ PV +TGS+
Sbjct: 80 LQLNSVTTEDTATYYCAS---WGGDVWGAGTTVTVSSAKTTAPSVYPLAPVCGD-TTGSS 135
Query: 247 SRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
+ CLV+G+ P P +TW + SL S H
Sbjct: 136 VTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 164
>pdb|1XGQ|B Chain B, Structure For Antibody Hyhel-63 Y33v Mutant Complexed With
Hen Egg Lysozyme
Length = 210
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 14/91 (15%)
Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT------GAPPIFIQRPVSTTYSTGST 246
L+L ++ +D+ Y C + G DV TVT AP ++ PV +TGS+
Sbjct: 80 LQLNSVTTEDTATYYCAS---WGGDVWGAGTTVTVSSAKTTAPSVYPLAPVCGD-TTGSS 135
Query: 247 SRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
+ CLV+G+ P P +TW + SL S H
Sbjct: 136 VTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 164
>pdb|1ZTX|H Chain H, West Nile Virus Envelope Protein Diii In Complex With
Neutralizing E16 Antibody Fab
Length = 219
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 42/157 (26%), Positives = 63/157 (40%), Gaps = 35/157 (22%)
Query: 153 GSSVEIPCKPDGEPLPR--ISWSKDEA----EFVED---------RNHKIH--------- 188
G+SV+I CK G I W K E++ D N K+
Sbjct: 15 GASVQISCKATGYTFSDYWIEWVKQRPGHGLEWIGDILCGTGRTRYNEKLKAMATFTADT 74
Query: 189 --RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY-----LTVTGA---PPIFIQRPVS 238
T ++L ++ +DS +Y C S G D A+ + LTV+ A PP
Sbjct: 75 SSNTAFMQLSSLTSEDSAVYYCARSASYG-DYADYWGHGTTLTVSSAKTTPPSVYPLAPG 133
Query: 239 TTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH 275
+TGS+ + CLV+G+ +T + SL S H
Sbjct: 134 CGDTTGSSVTLGCLVKGYFPESVTVTWNSGSLSSSVH 170
>pdb|1SY6|H Chain H, Crystal Structure Of Cd3gammaepsilon Heterodimer In
Complex With Okt3 Fab Fragment
Length = 219
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 22/115 (19%)
Query: 174 KDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCT-------ASNLLGEDVAEGYLTV- 225
KD+A D++ T ++L ++ +DS +Y C + G+ LTV
Sbjct: 65 KDKATLTTDKSSS---TAYMQLSSLTSEDSAVYYCARYYDDHYCLDYWGQGTT---LTVS 118
Query: 226 ---TGAPPIFIQRPVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
T AP ++ PV +TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 119 SAKTTAPSVYPLAPVCGG-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 170
>pdb|2VL5|A Chain A, Structure Of Anti-Collagen Type Ii Fab Ciic1
pdb|2VL5|C Chain C, Structure Of Anti-Collagen Type Ii Fab Ciic1
Length = 218
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 35/104 (33%), Positives = 50/104 (48%), Gaps = 17/104 (16%)
Query: 1 TDDRRSSTE-LVISGVQREHGGRYSCVAGNPAGVY-----RGDLHVTVNA-----PPIFI 49
T D+ SST + +S E Y C P G + +G L VTV+A P ++
Sbjct: 71 TVDKSSSTAYMQLSSPTSEDSAVYYCARLKPGGTWFAYWGQGTL-VTVSAAKTTAPSVYP 129
Query: 50 QRPVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 91
PV +TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 130 LAPVCGD-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 170
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 16/112 (14%)
Query: 174 KDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA---EGYLTV----- 225
KD+A D++ T ++L + +DS +Y C G A +G L
Sbjct: 65 KDKATLTVDKSSS---TAYMQLSSPTSEDSAVYYCARLKPGGTWFAYWGQGTLVTVSAAK 121
Query: 226 TGAPPIFIQRPVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
T AP ++ PV +TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 122 TTAPSVYPLAPVCGD-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 170
>pdb|1FPT|H Chain H, Three-Dimensional Structure Of The Complex Between The Fab
Fragment Of An Neutralizing Antibody For Type 1
Poliovirus And Its Viral Epitope
Length = 220
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 16/95 (16%)
Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGY------LTV----TGAPPIFIQRPVSTTYS 242
++L ++ DS +Y C A + DV Y LTV T AP ++ PV +
Sbjct: 81 MQLSSLTSDDSAVYFC-ARDFYDYDVGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGD-T 138
Query: 243 TGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 139 TGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 171
>pdb|3BFO|A Chain A, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|B Chain B, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|C Chain C, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|D Chain D, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 91
Score = 31.6 bits (70), Expect = 2.2, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
Query: 52 PVSTTYSTGSTSRITCLVEGHPLPQMTWF-------HDGNSLDSDDHVTYEHDG 98
P S GST + C+ G P+P WF H+ L +V EH G
Sbjct: 10 PTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQG 63
Score = 31.6 bits (70), Expect = 2.2, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
Query: 236 PVSTTYSTGSTSRITCLVEGHPLPQMTWF-------HDGNSLDSDDHVTYEHDG 282
P S GST + C+ G P+P WF H+ L +V EH G
Sbjct: 10 PTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQG 63
>pdb|1XGP|B Chain B, Structure For Antibody Hyhel-63 Y33a Mutant Complexed With
Hen Egg Lysozyme
Length = 210
Score = 31.6 bits (70), Expect = 2.2, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 14/91 (15%)
Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT------GAPPIFIQRPVSTTYSTGST 246
L+L ++ +D+ Y C + G DV TVT AP ++ PV +TGS+
Sbjct: 80 LQLNSVTTEDTATYYCAS---WGGDVWGAGTTVTVSSAKTTAPSVYPLAPVCGD-TTGSS 135
Query: 247 SRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
+ CLV+G+ P P +TW + SL S H
Sbjct: 136 VTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 164
>pdb|2HKF|H Chain H, Crystal Structure Of The Complex Fab M75- Peptide
pdb|2HKH|H Chain H, Crystal Structure Of The Fab M75
Length = 218
Score = 31.6 bits (70), Expect = 2.2, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Query: 2 DDRRSSTELVISGVQREHGGRYSCVA-GNPAGVYRGD-LHVTVNA----PPIFIQRPVST 55
DD +S L ++ ++ E Y CV GN Y G VTV+A PP
Sbjct: 75 DDSQSMIYLQMNNLKTEDTAMYYCVTYGNHPFAYWGQGTLVTVSAAKTTPPSVYPLAPGC 134
Query: 56 TYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH 91
+TGS+ + CLV+G+ +T + SL S H
Sbjct: 135 GDTTGSSVTLGCLVKGYFPESVTVTWNSGSLSSSVH 170
>pdb|2EH7|L Chain L, Crystal Structure Of Humanized Kr127 Fab
Length = 219
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 10 LVISGVQREHGGRYSCVAGNP-----AGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSR 64
L IS V+ E G Y CV G G + ++ TV AP +FI P +G+ S
Sbjct: 78 LKISRVEAEDVGVYYCVQGTHFPQTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASV 137
Query: 65 ITCLVEGHPLPQMTWFHDGNSLDS 88
+ L +P + N+L S
Sbjct: 138 VCLLNNFYPREAKVQWKVDNALQS 161
>pdb|2ADF|H Chain H, Crystal Structure And Paratope Determination Of 82d6a3, An
Antithrombotic Antibody Directed Against The Von
Willebrand Factor A3-Domain
Length = 218
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 13/96 (13%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNP--AGVYRGD-LHVTVN-----APPIFIQRPVSTTY 57
S+ L I+ ++ E Y C NP A Y G VTV+ AP ++ PV
Sbjct: 77 STAYLQINNLKNEDTATYFCARDNPYYALDYWGQGTTVTVSSAKTTAPSVYPLAPVCGD- 135
Query: 58 STGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 91
+TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 136 TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 169
>pdb|2EH8|L Chain L, Crystal Structure Of The Complex Of Humanized Kr127 Fab
And Pres1 Peptide Epitope
Length = 218
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 10 LVISGVQREHGGRYSCVAGNP-----AGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSR 64
L IS V+ E G Y CV G G + ++ TV AP +FI P +G+ S
Sbjct: 78 LKISRVEAEDVGVYYCVQGTHFPQTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASV 137
Query: 65 ITCLVEGHPLPQMTWFHDGNSLDS 88
+ L +P + N+L S
Sbjct: 138 VCLLNNFYPREAKVQWKVDNALQS 161
>pdb|1PLG|H Chain H, Evidence For The Extended Helical Nature Of Polysaccharide
Epitopes. The 2.8 Angstroms Resolution Structure And
Thermodynamics Of Ligand Binding Of An Antigen Binding
Fragment Specific For Alpha-(2->8)- Polysialic Acid
Length = 215
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 11/94 (11%)
Query: 190 TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT------GAPPIFIQRPVSTTYST 243
T ++L ++ +DS +Y C D +VT AP ++ PV +T
Sbjct: 78 TAYMQLSSLTSEDSAVYFCARGGKFAMDYWGQGTSVTVSSAKTTAPSVYPLAPVCGD-TT 136
Query: 244 GSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
GS+ + CLV+G+ P P +TW + SL S H
Sbjct: 137 GSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 168
>pdb|2IF7|A Chain A, Crystal Structure Of Ntb-A
pdb|2IF7|B Chain B, Crystal Structure Of Ntb-A
pdb|2IF7|C Chain C, Crystal Structure Of Ntb-A
pdb|2IF7|D Chain D, Crystal Structure Of Ntb-A
Length = 193
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 42/191 (21%), Positives = 72/191 (37%), Gaps = 39/191 (20%)
Query: 141 LVVKPFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFV-----EDRNHKIHRTG--- 191
+ + P + G SV +P + P GE + I+W +E E ++ +IH T
Sbjct: 1 MSLTPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQ 60
Query: 192 ----------SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTY 241
SL+L N+ +D+G YR S ++ L + + R + T
Sbjct: 61 GKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRI-----LRQLRNIQVTN 115
Query: 242 STGSTSRITC-------LVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESD 294
+ +TC + + W GN+L S ++T D R S
Sbjct: 116 HSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWDP--------RISS 167
Query: 295 AGVYNCVAQNS 305
Y C+A+N+
Sbjct: 168 EQDYTCIAENA 178
>pdb|1YNT|B Chain B, Structure Of The Immunodominant Epitope Displayed By The
Surface Antigen 1 (Sag1) Of Toxoplasma Gondii Complexed
To A Monoclonal Antibody
pdb|1YNT|D Chain D, Structure Of The Immunodominant Epitope Displayed By The
Surface Antigen 1 (Sag1) Of Toxoplasma Gondii Complexed
To A Monoclonal Antibody
Length = 218
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 18/102 (17%)
Query: 186 KIHRTGSLRLYNIGPQDSGLYRCTAS------NLLGEDVAEGYLTV----TGAPPIFIQR 235
K T + L + +DS +Y C S + G+ LTV T AP ++
Sbjct: 74 KSSSTAYMELARLTSEDSAIYYCARSSTWYYFDYWGQGTT---LTVSSAKTTAPSVYPLA 130
Query: 236 PVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
PV +TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 131 PVCGD-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 169
>pdb|3NA9|L Chain L, Crystal Structure Of Fab15
pdb|3NAA|L Chain L, Crystal Structure Of Fab15 Mut5
pdb|3NAB|L Chain L, Crystal Structure Of Fab15 Mut6
pdb|3NAC|L Chain L, Crystal Structure Of Fab15 Mut7
pdb|3ULU|L Chain L, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|L Chain L, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 214
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRG-----DLHVTVNAPPIFIQRPVSTTYSTGSTSR 64
L IS +Q E Y C GN G ++ TV AP +FI P +G+ S
Sbjct: 73 LTISSLQPEDFATYYCQQGNTLSYTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASV 132
Query: 65 ITCLVEGHPLPQMTWFHDGNSLDS 88
+ L +P + N+L S
Sbjct: 133 VCLLNNFYPREAKVQWKVDNALQS 156
>pdb|1AXT|H Chain H, Immune Versus Natural Selection: Antibody Aldolases With
The Rates Of Natural Enzymes
pdb|3FO9|H Chain H, Crystal Structure Of Aldolase Antibody 33f12 Fab' In
Complex With Hapten 1,3-Diketone
pdb|3FO9|B Chain B, Crystal Structure Of Aldolase Antibody 33f12 Fab' In
Complex With Hapten 1,3-Diketone
Length = 218
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 10/90 (11%)
Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV-----TGAPPIFIQRPVSTTYSTGSTS 247
L++ ++ +D+G+Y C +G L T AP ++ PV +TGS+
Sbjct: 83 LQMNSLRTEDTGIYYCKIYFYSFSYWGQGTLVTVSAAKTTAPSVYPLAPVCGD-TTGSSV 141
Query: 248 RITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
+ CLV+G+ P P +TW + SL S H
Sbjct: 142 TLGCLVKGYFPEPVTLTW--NSGSLSSGVH 169
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 2 DDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGD-LHVTVNA-----PPIFIQRPVST 55
DD +S L ++ ++ E G Y C + Y G VTV+A P ++ PV
Sbjct: 75 DDSKSRLYLQMNSLRTEDTGIYYCKIYFYSFSYWGQGTLVTVSAAKTTAPSVYPLAPVCG 134
Query: 56 TYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 91
+TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 135 D-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 169
>pdb|4HFU|H Chain H, Crystal Structure Of Fab 8m2 In Complex With A H2n2
Influenza Virus Hemagglutinin
Length = 226
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 42/175 (24%)
Query: 140 RLVVKPFDMRAPAGSSVEIPCKPDGEPLPR--ISW--------------------SKDEA 177
+LV DM+ P GSSV++PCK G+ I+W S + A
Sbjct: 3 QLVESGADMKPP-GSSVKVPCKASGDTFSSYTITWVRQAPGQGLEWMGGITPIFGSPNYA 61
Query: 178 EFVEDR----NHKIHRTGSLRLYNIGPQDSGLYRCT-------ASNLLGEDVAEGYLTV- 225
+ +DR + T + + N+ +D+ +Y C + + +G L
Sbjct: 62 QRFQDRVIITADESTSTAYMEVSNLRSEDTAVYFCARVGGEWGSGRYYLDHWGQGTLVTV 121
Query: 226 ----TGAPPIFIQRPVSTTYSTGSTSRITCLVEGH-PLPQMTWFHDGNSLDSDDH 275
T P +F P S + ++G T+ + CLV+ + P P ++ G +L S H
Sbjct: 122 SSASTKGPSVFPLAPSSKS-TSGGTAALGCLVKDYFPEPVTVSWNSG-ALTSGVH 174
>pdb|1CGS|H Chain H, Local And Transmitted Conformational Changes On
Complexation Of An Anti-Sweetener Fab
pdb|2CGR|H Chain H, Local And Transmitted Conformational Changes On
Complexation Of An Anti-Sweetener Fab
Length = 214
Score = 31.2 bits (69), Expect = 2.9, Method: Composition-based stats.
Identities = 35/156 (22%), Positives = 57/156 (36%), Gaps = 36/156 (23%)
Query: 153 GSSVEIPCKPDGEPLPR--ISWSKD---------------------------EAEFVEDR 183
G+SV+I CK G I W K+ +A F D
Sbjct: 15 GASVQISCKATGYTFSEYWIEWVKERPGHGLEWIGEILPGSGRTNYREKFKGKATFTADT 74
Query: 184 NHKIHRTGSLRLYNIGPQDSGLYRCT----ASNLLGEDVAEGYLTVTGAPPIFIQRPVST 239
+ T ++L ++ +DS +Y CT + + G+ + PP
Sbjct: 75 SSN---TAYMQLSSLTSEDSAVYYCTRGYSSMDYWGQGTSVTVSAAKTTPPSVYPLAPGC 131
Query: 240 TYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH 275
+TGS+ + CLV+G+ +T + SL S H
Sbjct: 132 GDTTGSSVTLGCLVKGYFPESVTVTWNSGSLSSSVH 167
>pdb|1WWB|X Chain X, Ligand Binding Domain Of Human Trkb Receptor
Length = 103
Score = 31.2 bits (69), Expect = 3.0, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 15/92 (16%)
Query: 44 APPI-FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD------HVT--Y 94
AP I F++ P S + I V+G+P P + WF++G L+ HVT
Sbjct: 4 APTITFLESPTSDHHWC-----IPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHT 58
Query: 95 EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE 126
E+ G L L+ + G Y +A+N G E
Sbjct: 59 EYHG-CLQLDNPTHMNNGDYTLIAKNEYGKDE 89
Score = 31.2 bits (69), Expect = 3.0, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 15/92 (16%)
Query: 228 APPI-FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD------HVT--Y 278
AP I F++ P S + I V+G+P P + WF++G L+ HVT
Sbjct: 4 APTITFLESPTSDHHWC-----IPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHT 58
Query: 279 EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE 310
E+ G L L+ + G Y +A+N G E
Sbjct: 59 EYHG-CLQLDNPTHMNNGDYTLIAKNEYGKDE 89
>pdb|1MHP|L Chain L, Crystal Structure Of A Chimeric Alpha1 Integrin I-Domain
In Complex With The Fab Fragment Of A Humanized
Neutralizing Antibody
pdb|1MHP|Y Chain Y, Crystal Structure Of A Chimeric Alpha1 Integrin I-Domain
In Complex With The Fab Fragment Of A Humanized
Neutralizing Antibody
Length = 212
Score = 31.2 bits (69), Expect = 3.0, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 10 LVISGVQREHGGRYSCV--AGNPAGVYRG---DLHVTVNAPPIFIQRPVSTTYSTGSTSR 64
L IS +Q E Y C +GNP +G ++ TV AP +FI P +G+ S
Sbjct: 71 LTISSLQPEDFATYYCQQWSGNPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASV 130
Query: 65 ITCLVEGHPLPQMTWFHDGNSLDS 88
+ L +P + N+L S
Sbjct: 131 VCLLNNFYPREAKVQWKVDNALQS 154
>pdb|2E5E|A Chain A, Solution Structure Of Variable-Type Domain Of Human
Receptor For Advanced Glycation Endproducts
Length = 101
Score = 31.2 bits (69), Expect = 3.0, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 182 DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY 222
D ++ GSL L +G QD G++RC A N G++ Y
Sbjct: 53 DSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNY 93
Score = 31.2 bits (69), Expect = 3.0, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 366 DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY 406
D ++ GSL L +G QD G++RC A N G++ Y
Sbjct: 53 DSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNY 93
>pdb|1KB5|H Chain H, Murine T-Cell Receptor Variable DomainFAB COMPLEX
Length = 219
Score = 31.2 bits (69), Expect = 3.0, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 19/103 (18%)
Query: 186 KIHRTGSLRLYNIGPQDSGLYRCTAS-------NLLGEDVAEGYLTV----TGAPPIFIQ 234
K T ++L ++ +DS +Y C S + G+ LTV T AP ++
Sbjct: 74 KSSSTAYMQLKSLTSEDSAVYYCARSRTDLYYFDYWGQGTT---LTVSSAKTTAPSVYPL 130
Query: 235 RPVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
PV +TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 131 APVCGD-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 170
>pdb|2YWZ|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 111
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Query: 50 QRPVSTTYSTGSTSRITCLVEGHP--LPQMTWFHD--GNSLDS--------DDHVTYEHD 97
Q P + T TG + I C+++ H L TW+ G++ + D+ V
Sbjct: 5 QTPRTITKETGESLTIKCVLKDHSCGLSSTTWYRTQLGSTNEKTISIGGRYDETVDKGSK 64
Query: 98 GFVLVLNGVRESDAGVYNCVAQNS 121
F L ++ +R D+G Y C A S
Sbjct: 65 SFSLRISDLRVEDSGTYKCQADYS 88
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Query: 234 QRPVSTTYSTGSTSRITCLVEGHP--LPQMTWFHD--GNSLDS--------DDHVTYEHD 281
Q P + T TG + I C+++ H L TW+ G++ + D+ V
Sbjct: 5 QTPRTITKETGESLTIKCVLKDHSCGLSSTTWYRTQLGSTNEKTISIGGRYDETVDKGSK 64
Query: 282 GFVLVLNGVRESDAGVYNCVAQNS 305
F L ++ +R D+G Y C A S
Sbjct: 65 SFSLRISDLRVEDSGTYKCQADYS 88
>pdb|3JZ7|A Chain A, Crystal Structure Of The Extracellular Domains Of
Coxsackie & Adenovirus Receptor From Mouse (Mcar)
Length = 214
Score = 31.2 bits (69), Expect = 3.2, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 16/117 (13%)
Query: 109 SDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEI------PCKP 162
SD G Y C + + G A ++ + +VKP R S EI C+P
Sbjct: 94 SDIGTYQCKVKKAPGVANKKFLLTV--------LVKPSGTRCFVDGSEEIGNDFKLKCEP 145
Query: 163 DGEPLP-RISWSK-DEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 217
LP + W K +++ + + + + N + SG Y CT N +G D
Sbjct: 146 KEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSD 202
Score = 31.2 bits (69), Expect = 3.2, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 16/117 (13%)
Query: 293 SDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEI------PCKP 346
SD G Y C + + G A ++ + +VKP R S EI C+P
Sbjct: 94 SDIGTYQCKVKKAPGVANKKFLLTV--------LVKPSGTRCFVDGSEEIGNDFKLKCEP 145
Query: 347 DGEPLP-RISWSK-DEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 401
LP + W K +++ + + + + N + SG Y CT N +G D
Sbjct: 146 KEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSD 202
Score = 30.0 bits (66), Expect = 6.2, Method: Composition-based stats.
Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 3/134 (2%)
Query: 2 DDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGS 61
D + + ++ +Q G Y C GV +TV P + V + G+
Sbjct: 78 DVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGN 137
Query: 62 TSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN 120
++ C + LP Q W +S E V+ + +G Y+C QN
Sbjct: 138 DFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQN 197
Query: 121 SEGSAESVAMIRIN 134
GS + M+R++
Sbjct: 198 RVGSDQ--CMLRLD 209
>pdb|2EDR|A Chain A, Solution Structure Of The Ig-Like Domain (3361-3449) Of
Human Obscurin
Length = 102
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 43 NAPPIFIQRPVSTTYSTGSTSRITC-LVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV- 100
+ P FI R G+T+ + C L + P+ W SL D + DG V
Sbjct: 6 SGPAHFIGRLRHQESIEGATATLRCELSKAAPVE---WRKGRESLRDGDRHSLRQDGAVC 62
Query: 101 -LVLNGVRESDAGVYNCVAQNSEGSA 125
L + G+ +DAG Y+CV SA
Sbjct: 63 ELQICGLAVADAGEYSCVCGEERTSA 88
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 229 PPIFIQRPVSTTYSTGSTSRITC-LVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV--L 285
P FI R G+T+ + C L + P+ W SL D + DG V L
Sbjct: 8 PAHFIGRLRHQESIEGATATLRCELSKAAPVE---WRKGRESLRDGDRHSLRQDGAVCEL 64
Query: 286 VLNGVRESDAGVYNCVAQNSEGSA 309
+ G+ +DAG Y+CV SA
Sbjct: 65 QICGLAVADAGEYSCVCGEERTSA 88
>pdb|2Y5T|A Chain A, Crystal Structure Of The Pathogenic Autoantibody Ciic1 In
Complex With The Triple-Helical C1 Peptide
Length = 232
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 35/104 (33%), Positives = 50/104 (48%), Gaps = 17/104 (16%)
Query: 1 TDDRRSSTE-LVISGVQREHGGRYSCVAGNPAGVY-----RGDLHVTVNA-----PPIFI 49
T D+ SST + +S E Y C P G + +G L VTV+A P ++
Sbjct: 71 TVDKSSSTAYMQLSSPTSEDSAVYYCARLKPGGTWFAYWGQGTL-VTVSAAKTTAPSVYP 129
Query: 50 QRPVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 91
PV +TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 130 LAPVCGD-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 170
Score = 30.4 bits (67), Expect = 5.1, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 16/112 (14%)
Query: 174 KDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA---EGYLTV----- 225
KD+A D++ T ++L + +DS +Y C G A +G L
Sbjct: 65 KDKATLTVDKSSS---TAYMQLSSPTSEDSAVYYCARLKPGGTWFAYWGQGTLVTVSAAK 121
Query: 226 TGAPPIFIQRPVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
T AP ++ PV +TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 122 TTAPSVYPLAPVCGD-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 170
>pdb|2GFB|B Chain B, Crystal Structure Of A Catalytic Fab Having Esterase-Like
Activity
pdb|2GFB|D Chain D, Crystal Structure Of A Catalytic Fab Having Esterase-Like
Activity
pdb|2GFB|F Chain F, Crystal Structure Of A Catalytic Fab Having Esterase-Like
Activity
pdb|2GFB|H Chain H, Crystal Structure Of A Catalytic Fab Having Esterase-Like
Activity
pdb|2GFB|J Chain J, Crystal Structure Of A Catalytic Fab Having Esterase-Like
Activity
pdb|2GFB|L Chain L, Crystal Structure Of A Catalytic Fab Having Esterase-Like
Activity
pdb|2GFB|N Chain N, Crystal Structure Of A Catalytic Fab Having Esterase-Like
Activity
pdb|2GFB|P Chain P, Crystal Structure Of A Catalytic Fab Having Esterase-Like
Activity
Length = 219
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 12/93 (12%)
Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVA---EGYLTV----TGAPPIFIQRPVSTTYSTGS 245
L++ ++ +D+ +Y C + G A +G L T AP ++ PV +TGS
Sbjct: 81 LQMTSLRSEDTAMYYCARGDYYGSRGAYWGQGTLVTVSAKTTAPSVYPLAPVCGD-TTGS 139
Query: 246 TSRITCLVEGH-PLP-QMTWFHDGNSLDSDDHV 276
+ + CLV+G+ P P +TW + SL S H
Sbjct: 140 SVTLGCLVKGYFPEPVTLTW--NSGSLSSGVHT 170
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Query: 2 DDRRSSTELVISGVQREHGGRYSCVAGN---PAGVYRGD-----LHVTVNAPPIFIQRPV 53
D+ +++ L ++ ++ E Y C G+ G Y G + AP ++ PV
Sbjct: 73 DNPKNTLFLQMTSLRSEDTAMYYCARGDYYGSRGAYWGQGTLVTVSAKTTAPSVYPLAPV 132
Query: 54 STTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDHV 92
+TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 133 CGD-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVHT 170
>pdb|1HCF|X Chain X, Crystal Structure Of Trkb-D5 Bound To Neurotrophin-45
pdb|1HCF|Y Chain Y, Crystal Structure Of Trkb-D5 Bound To Neurotrophin-45
Length = 101
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 15/92 (16%)
Query: 44 APPI-FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD------HVT--Y 94
AP I F++ P S + I V+G+P P + WF++G L+ HVT
Sbjct: 4 APTITFLESPTSDHHWC-----IPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHT 58
Query: 95 EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE 126
E+ G L L+ + G Y +A+N G E
Sbjct: 59 EYHG-CLQLDNPTHMNNGDYTLIAKNEYGKDE 89
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 15/92 (16%)
Query: 228 APPI-FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD------HVT--Y 278
AP I F++ P S + I V+G+P P + WF++G L+ HVT
Sbjct: 4 APTITFLESPTSDHHWC-----IPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHT 58
Query: 279 EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE 310
E+ G L L+ + G Y +A+N G E
Sbjct: 59 EYHG-CLQLDNPTHMNNGDYTLIAKNEYGKDE 89
>pdb|1YNL|H Chain H, Identification Of Key Residues Of The Nc6.8 Fab Antibody
Fragment Binding To Synthetic Sweeterners: Crystal
Structure Of Nc6.8 Co-Crystalized With High Potency
Sweetener Compound Sc45647
Length = 219
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 7/106 (6%)
Query: 174 KDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCT----ASNLLGEDVAEGYLTVTGAP 229
K +A F D + T ++L ++ +DS +Y CT + + G+ + P
Sbjct: 65 KGKATFTADTSSN---TAYMQLSSLTSEDSAVYYCTRGYSSMDYWGQGTSVTVSAAKTTP 121
Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH 275
P +TGS+ + CLV+G+ +T + SL S H
Sbjct: 122 PSVYPLAPGCGDTTGSSVTLGCLVKGYFPESVTVTWNSGSLSSSVH 167
>pdb|2L7U|A Chain A, Structure Of Cel-Pep-Rage V Domain Complex
Length = 105
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 182 DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY 222
D ++ GSL L +G QD G++RC A N G++ Y
Sbjct: 53 DSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNY 93
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 366 DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY 406
D ++ GSL L +G QD G++RC A N G++ Y
Sbjct: 53 DSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNY 93
>pdb|2FGW|L Chain L, X-Ray Structures Of Fragments From Binding And Nonbinding
Versions Of A Humanized Anti-Cd18 Antibody: Structural
Indications Of The Key Role Of Vh Residues 59 To 65
Length = 214
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 10 LVISGVQREHGGRYSCVAGN--PAGVYRG---DLHVTVNAPPIFIQRPVSTTYSTGSTSR 64
L IS +Q E Y C GN P +G ++ TV AP +FI P +G+ S
Sbjct: 73 LTISSLQPEDFATYYCQQGNTLPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASV 132
Query: 65 ITCLVEGHPLPQMTWFHDGNSLDS 88
+ L +P + N+L S
Sbjct: 133 VCLLNNFYPREAKVQWKVDNALQS 156
>pdb|7FAB|H Chain H, Crystal Structure Of Human Immunoglobulin Fragment Fab New
Refined At 2.0 Angstroms Resolution
Length = 217
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 11/85 (12%)
Query: 192 SLRLYNIGPQDSGLYRCTASNLL--GEDV-AEGYLTV-----TGAPPIFIQRPVSTTYST 243
SLRL ++ D+ +Y C A NL+ G DV +G L T P +F P S + ++
Sbjct: 79 SLRLSSVTAADTAVYYC-ARNLIAGGIDVWGQGSLVTVSSASTKGPSVFPLAPSSKS-TS 136
Query: 244 GSTSRITCLVEGH-PLPQMTWFHDG 267
G T+ + CLV+ + P P ++ G
Sbjct: 137 GGTAALGCLVKDYFPEPVTVSWNSG 161
>pdb|1YNK|H Chain H, Identification Of Key Residues Of The Nc6.8 Fab Antibody
Fragment Binding To Synthetic Sweeteners: Crystal
Structure Of Nc6.8 Co-Crystalized With High Potency
Sweetener Compound Sc45647
Length = 219
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 7/106 (6%)
Query: 174 KDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCT----ASNLLGEDVAEGYLTVTGAP 229
K +A F D + T ++L ++ +DS +Y CT + + G+ + P
Sbjct: 65 KGKATFTADTSSN---TAYMQLSSLTSEDSAVYYCTRGYSSMDYWGQGTSVTVSAAKTTP 121
Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH 275
P +TGS+ + CLV+G+ +T + SL S H
Sbjct: 122 PSVYPLAPGCGDTTGSSVTLGCLVKGYFPESVTVTWNSGSLSSSVH 167
>pdb|2CR3|A Chain A, Solution Structure Of The First Ig-Like Domain Of Human
Fibroblast Growth Factor Receptor 1
Length = 99
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 170 ISWSKDEAEFVEDRNHKIHRTGS-LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGA 228
I+W +D + E +I TG + + + P DSGLY C S+ G D + V+ A
Sbjct: 34 INWLRDGVQLAESNRTRI--TGEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDA 91
Query: 229 PP 230
P
Sbjct: 92 LP 93
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 354 ISWSKDEAEFVEDRNHKIHRTGS-LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGE 412
I+W +D + E +I TG + + + P DSGLY C S+ G D Y +V
Sbjct: 34 INWLRDGVQLAESNRTRI--TGEEVEVQDSVPADSGLYACVTSSPSGSDTT--YFSVNVS 89
Query: 413 NSVEPAPHT 421
+++ P +
Sbjct: 90 DALPSGPSS 98
>pdb|3NCJ|L Chain L, Crystal Structure Of Fab15 Mut8
Length = 214
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 10 LVISGVQREHGGRYSCVAGN--PAGVYRG---DLHVTVNAPPIFIQRPVSTTYSTGSTSR 64
L IS +Q E Y C GN P +G ++ TV AP +FI P +G+ S
Sbjct: 73 LTISSLQPEDFATYYCQQGNTLPYTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASV 132
Query: 65 ITCLVEGHPLPQMTWFHDGNSLDS 88
+ L +P + N+L S
Sbjct: 133 VCLLNNFYPREAKVQWKVDNALQS 156
>pdb|3NCM|A Chain A, Neural Cell Adhesion Molecule, Module 2, Nmr, 20
Structures
Length = 92
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Query: 47 IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNS--LDSDDHVTYEHDGFVLVLN 104
+F P + G + I C V P + W H G L D + + L +
Sbjct: 3 MFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY-LQIR 61
Query: 105 GVRESDAGVYNC 116
G++++D G Y C
Sbjct: 62 GIKKTDEGTYRC 73
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Query: 231 IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNS--LDSDDHVTYEHDGFVLVLN 288
+F P + G + I C V P + W H G L D + + L +
Sbjct: 3 MFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY-LQIR 61
Query: 289 GVRESDAGVYNC 300
G++++D G Y C
Sbjct: 62 GIKKTDEGTYRC 73
>pdb|4AL8|H Chain H, Structure Of Dengue Virus Diii In Complex With Fab 2h12
pdb|4ALA|H Chain H, Structure Of Dengue Virus Diii In Complex With Fab 2h12
Length = 217
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 190 TGSLRLYNIGPQDSGLYRCT-----ASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTG 244
T ++L ++ +DS +Y CT A + G+ + + PP +TG
Sbjct: 78 TAYMQLSSLTSEDSAVYYCTRGGSHAMDYWGQGTSVTVSSAKTTPPSVYPLAPGCGDTTG 137
Query: 245 STSRITCLVEGHPLPQMTWFHDGNSLDSDDH 275
S+ + CLV+G+ +T + SL S H
Sbjct: 138 SSVTLGCLVKGYFPESVTVTWNSGSLSSSVH 168
>pdb|3FN0|L Chain L, Crystal Structure Of Hiv-1 Neutralizing Human Fab Z13e1 In
Complex With A 12-Residue Peptide Containing The Z13e1
Epitope On Gp41
pdb|3Q1S|L Chain L, Hiv-1 Neutralizing Antibody Z13e1 In Complex With Epitope
Display Protein
Length = 212
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 192 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT----VTGAPPIFIQRPVSTTYSTGSTS 247
+L + ++ P+D +Y C A LL + +G AP +FI P +G+ S
Sbjct: 70 TLTISSLEPEDFAVYYCQARLLLPQTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTAS 129
Query: 248 RITCLVEGHPLPQMTWFHDGNSLDS 272
+ L +P + N+L S
Sbjct: 130 VVCLLNNFYPREAKVQWKVDNALQS 154
>pdb|4G6K|L Chain L, Crystal Structure Of The Therapeutic Antibody Binding
Fragment Of Gevokizumab In Its Unbound State
Length = 212
Score = 30.8 bits (68), Expect = 3.9, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 10 LVISGVQREHGGRYSCVAGN--PAGVYRG---DLHVTVNAPPIFIQRPVSTTYSTGSTSR 64
L IS +Q+E Y C+ G P +G ++ TV AP +FI P +G+ S
Sbjct: 73 LTISSLQQEDFATYFCLQGKMLPWTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASV 132
Query: 65 ITCLVEGHPLPQMTWFHDGNSLDS 88
+ L +P + N+L S
Sbjct: 133 VCLLNNFYPREAKVQWKVDNALQS 156
>pdb|2O26|X Chain X, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|Y Chain Y, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|U Chain U, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|W Chain W, Structure Of A Class Iii Rtk Signaling Assembly
Length = 290
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 61 STSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN 120
STS + ++ +P PQ NS D YE L ++ R D+GV+ C A N
Sbjct: 216 STSVNSMWLKMNPQPQHIAQVKHNSWHRGD-FNYERQE-TLTISSARVDDSGVFMCYANN 273
Query: 121 SEGSAESVAMIRI 133
+ GSA +++
Sbjct: 274 TFGSANVTTTLKV 286
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 245 STSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN 304
STS + ++ +P PQ NS D YE L ++ R D+GV+ C A N
Sbjct: 216 STSVNSMWLKMNPQPQHIAQVKHNSWHRGD-FNYERQE-TLTISSARVDDSGVFMCYANN 273
Query: 305 SEGSAESVAMIRI 317
+ GSA +++
Sbjct: 274 TFGSANVTTTLKV 286
>pdb|1HE7|A Chain A, Human Nerve Growth Factor Receptor Trka
Length = 126
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 10/72 (13%)
Query: 158 IPCKPDGEPLPRISW----------SKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYR 207
IP DG+P P + W S EF+E ++ R G LRL ++G Y
Sbjct: 20 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79
Query: 208 CTASNLLGEDVA 219
A+N G+ A
Sbjct: 80 LLAANPFGQASA 91
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 10/72 (13%)
Query: 342 IPCKPDGEPLPRISW----------SKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYR 391
IP DG+P P + W S EF+E ++ R G LRL ++G Y
Sbjct: 20 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79
Query: 392 CTASNLLGEDVA 403
A+N G+ A
Sbjct: 80 LLAANPFGQASA 91
>pdb|4G6M|L Chain L, Crystal Strucure Of Human Il-1beta In Complex With
Therapeutic Antibody Binding Fragment Of Gevokizumab
Length = 213
Score = 30.8 bits (68), Expect = 4.0, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 10 LVISGVQREHGGRYSCVAGN--PAGVYRG---DLHVTVNAPPIFIQRPVSTTYSTGSTSR 64
L IS +Q+E Y C+ G P +G ++ TV AP +FI P +G+ S
Sbjct: 73 LTISSLQQEDFATYFCLQGKMLPWTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASV 132
Query: 65 ITCLVEGHPLPQMTWFHDGNSLDS 88
+ L +P + N+L S
Sbjct: 133 VCLLNNFYPREAKVQWKVDNALQS 156
>pdb|1IFH|H Chain H, A Detailed Analysis Of The Free And Bound Conformation Of
An Antibody: X-Ray Structures Of Anti-Peptide Fab
17(Slash)9 And Three Different Fab-Peptide Complexes
pdb|1HIL|B Chain B, Structural Evidence For Induced Fit As A Mechanism For
Antigen-Antibody Recognition
pdb|1HIL|D Chain D, Structural Evidence For Induced Fit As A Mechanism For
Antigen-Antibody Recognition
pdb|1HIM|L Chain L, Structural Evidence For Induced Fit As A Mechanism For
Antibody-Antigen Recognition
pdb|1HIM|M Chain M, Structural Evidence For Induced Fit As A Mechanism For
Antibody-Antigen Recognition
pdb|1HIN|H Chain H, Structural Evidence For Induced Fit As A Mechanism For
Antibody-Antigen Recognition
Length = 220
Score = 30.8 bits (68), Expect = 4.0, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 14/94 (14%)
Query: 193 LRLYNIGPQDSGLYRCTASNLLGED----VAEGYLTV-----TGAPPIFIQRPVSTTYST 243
L++ ++ +DS +Y C E+ +G L T AP ++ PV +T
Sbjct: 81 LQMSSLKSEDSAMYYCARRERYDENGFAYWGQGTLVTVSAAKTTAPSVYPLAPVCGD-TT 139
Query: 244 GSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
GS+ + CLV+G+ P P +TW + SL S H
Sbjct: 140 GSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 171
>pdb|1MH5|B Chain B, The Structure Of The Complex Of The Fab Fragment Of The
Esterolytic Antibody Ms6-164 And A Transition-State
Analog
pdb|1MH5|H Chain H, The Structure Of The Complex Of The Fab Fragment Of The
Esterolytic Antibody Ms6-164 And A Transition-State
Analog
Length = 230
Score = 30.8 bits (68), Expect = 4.1, Method: Composition-based stats.
Identities = 40/159 (25%), Positives = 64/159 (40%), Gaps = 39/159 (24%)
Query: 153 GSSVEIPCKPDGEPLPR--ISWSKDEA-------------EFVEDRNHKIHR-------- 189
G+SV++ CK G I+W K + + N K R
Sbjct: 15 GASVKLSCKASGYTFTSNWINWVKQRPGQGLEWIGNIYPDSYRTNYNEKFKRKATLTVDT 74
Query: 190 ---TGSLRLYNIGPQDSGLYRCTASNLLGEDV---AEGYLTV-----TGAPPIFIQRPVS 238
T ++L ++ DS +Y C + + V +G L T AP ++ PV
Sbjct: 75 SSSTAYMQLSSLTSDDSAVYYCVRKHYSYDGVVYWGQGTLVTVSAAKTTAPSVYPLAPVC 134
Query: 239 TTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
++GS+ + CLV+G+ P P +TW + SL S H
Sbjct: 135 GD-TSGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 170
>pdb|2OSL|H Chain H, Crystal Structure Of Rituximab Fab In Complex With An
Epitope Peptide
pdb|2OSL|A Chain A, Crystal Structure Of Rituximab Fab In Complex With An
Epitope Peptide
Length = 224
Score = 30.8 bits (68), Expect = 4.1, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 174 KDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV------AEGYLTVTG 227
K +A D++ T ++L ++ +DS +Y C S G D A +TV+
Sbjct: 65 KGKATLTADKSSS---TAYMQLSSLTSEDSAVYYCARSTYYGGDWYFNVWGAGTTVTVSA 121
Query: 228 A----PPIFIQRPVSTTYSTGSTSRITCLVEGH-PLPQMTWFHDG 267
A P +F P S + ++G T+ + CLV+ + P P ++ G
Sbjct: 122 ASTKGPSVFPLAPSSKS-TSGGTAALGCLVKDYFPEPVTVSWNSG 165
>pdb|1ZLS|L Chain L, Fab 2g12 + Man4
pdb|1ZLU|L Chain L, Fab 2g12 + Man5
pdb|1ZLU|K Chain K, Fab 2g12 + Man5
pdb|1ZLV|L Chain L, Fab 2g12 + Man7
pdb|1ZLV|K Chain K, Fab 2g12 + Man7
pdb|1ZLW|L Chain L, Fab 2g12 + Man8
pdb|1ZLW|K Chain K, Fab 2g12 + Man8
pdb|2OQJ|A Chain A, Crystal Structure Analysis Of Fab 2g12 In Complex With
Peptide 2g12.1
pdb|2OQJ|D Chain D, Crystal Structure Analysis Of Fab 2g12 In Complex With
Peptide 2g12.1
pdb|2OQJ|G Chain G, Crystal Structure Analysis Of Fab 2g12 In Complex With
Peptide 2g12.1
pdb|2OQJ|J Chain J, Crystal Structure Analysis Of Fab 2g12 In Complex With
Peptide 2g12.1
Length = 211
Score = 30.8 bits (68), Expect = 4.1, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 6 SSTE--LVISGVQREHGGRYSC--VAGNPAGVYRG---DLHVTVNAPPIFIQRPVSTTYS 58
S TE L ISG+Q + Y C AG A +G ++ TV AP +FI P
Sbjct: 66 SGTEFTLTISGLQFDDFATYHCQHYAGYSATFGQGTRVEIKRTVAAPSVFIFPPSDEQLK 125
Query: 59 TGSTSRITCLVEGHPLPQMTWFHDGNSLDS 88
+G+ S + L +P + N+L S
Sbjct: 126 SGTASVVCLLNNFYPREAKVQWKVDNALQS 155
>pdb|1OM3|L Chain L, Fab 2g12 Unliganded
pdb|1OM3|M Chain M, Fab 2g12 Unliganded
pdb|1OP3|L Chain L, Crystal Structure Of Fab 2g12 Bound To Man1->2man
pdb|1OP3|K Chain K, Crystal Structure Of Fab 2g12 Bound To Man1->2man
pdb|1OP5|L Chain L, Crystal Structure Of Fab 2g12 Bound To Man9glcnac2
pdb|1OP5|K Chain K, Crystal Structure Of Fab 2g12 Bound To Man9glcnac2
pdb|3OAU|L Chain L, Antibody 2g12 Recognizes Di-Mannose Equivalently In
Domain- And Non- Domain-Exchanged Forms, But Only Binds
The Hiv-1 Glycan Shield If Domain-Exchanged
Length = 212
Score = 30.8 bits (68), Expect = 4.1, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 6 SSTE--LVISGVQREHGGRYSC--VAGNPAGVYRG---DLHVTVNAPPIFIQRPVSTTYS 58
S TE L ISG+Q + Y C AG A +G ++ TV AP +FI P
Sbjct: 66 SGTEFTLTISGLQFDDFATYHCQHYAGYSATFGQGTRVEIKRTVAAPSVFIFPPSDEQLK 125
Query: 59 TGSTSRITCLVEGHPLPQMTWFHDGNSLDS 88
+G+ S + L +P + N+L S
Sbjct: 126 SGTASVVCLLNNFYPREAKVQWKVDNALQS 155
>pdb|3OAY|K Chain K, A Non-Self Sugar Mimic Of The Hiv Glycan Shield Shows
Enhanced Antigenicity
pdb|3OAY|L Chain L, A Non-Self Sugar Mimic Of The Hiv Glycan Shield Shows
Enhanced Antigenicity
pdb|3OAZ|K Chain K, A Non-Self Sugar Mimic Of The Hiv Glycan Shield Shows
Enhanced Antigenicity
pdb|3OAZ|L Chain L, A Non-Self Sugar Mimic Of The Hiv Glycan Shield Shows
Enhanced Antigenicity
pdb|3OB0|L Chain L, A Non-Self Sugar Mimic Of The Hiv Glycan Shield Shows
Enhanced Antigenicity
pdb|3OB0|K Chain K, A Non-Self Sugar Mimic Of The Hiv Glycan Shield Shows
Enhanced Antigenicity
Length = 213
Score = 30.8 bits (68), Expect = 4.1, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 6 SSTE--LVISGVQREHGGRYSC--VAGNPAGVYRG---DLHVTVNAPPIFIQRPVSTTYS 58
S TE L ISG+Q + Y C AG A +G ++ TV AP +FI P
Sbjct: 67 SGTEFTLTISGLQFDDFATYHCQHYAGYSATFGQGTRVEIKRTVAAPSVFIFPPSDEQLK 126
Query: 59 TGSTSRITCLVEGHPLPQMTWFHDGNSLDS 88
+G+ S + L +P + N+L S
Sbjct: 127 SGTASVVCLLNNFYPREAKVQWKVDNALQS 156
>pdb|1MJ8|H Chain H, High Resolution Crystal Structure Of The Fab Fragment Of
The Esterolytic Antibody Ms6-126
Length = 230
Score = 30.8 bits (68), Expect = 4.2, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 13/96 (13%)
Query: 190 TGSLRLYNIGPQDSGLYRCTASNLLGEDV---AEGYLTV-----TGAPPIFIQRPVSTTY 241
T ++L ++ DS +Y C + + V +G L T AP ++ PV
Sbjct: 78 TAYMQLSSLTSDDSAVYYCARKHYFYDGVVYWGQGTLVTVSAAKTTAPSVYPLAPVCGD- 136
Query: 242 STGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
++GS+ + CLV+G+ P P +TW + SL S H
Sbjct: 137 TSGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 170
>pdb|1KNO|B Chain B, Crystal Structure Of The Complex Of A Catalytic Antibody
Fab With A Transition State Analog: Structural
Similarities In Esterase-Like Abzymes
pdb|1KNO|D Chain D, Crystal Structure Of The Complex Of A Catalytic Antibody
Fab With A Transition State Analog: Structural
Similarities In Esterase-Like Abzymes
pdb|1KNO|F Chain F, Crystal Structure Of The Complex Of A Catalytic Antibody
Fab With A Transition State Analog: Structural
Similarities In Esterase-Like Abzymes
Length = 220
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 13/94 (13%)
Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVA---EGYLTV-----TGAPPIFIQRPVSTTYSTG 244
L++ ++ +D+ +Y C + G A +G L T AP ++ PV +TG
Sbjct: 81 LQMTSLRSEDTAMYYCARGDYYGSRGAYWGQGTLVTVSAAKTTAPSVYPLAPVCGD-TTG 139
Query: 245 STSRITCLVEGH-PLP-QMTWFHDGNSLDSDDHV 276
S+ + CLV+G+ P P +TW + SL S H
Sbjct: 140 SSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVHT 171
>pdb|3V4P|H Chain H, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1
pdb|3V4P|M Chain M, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1
pdb|3V4V|H Chain H, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1 And Ro0505376
pdb|3V4V|M Chain M, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1 And Ro0505376
Length = 219
Score = 30.8 bits (68), Expect = 4.2, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 13/97 (13%)
Query: 190 TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY------LTVTGA---PPIFIQRPVSTT 240
T ++L ++ +DS +Y C G D A Y +TV+ A PP +
Sbjct: 78 TAYMQLSSLTSEDSAVYYCARGGYDGWDYAIDYWGQGTSVTVSSAKTTPPSVYPLAPGSA 137
Query: 241 YSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
T S + CLV+G+ P P +TW + SL S H
Sbjct: 138 AQTNSMVTLGCLVKGYFPEPVTVTW--NSGSLSSGVH 172
>pdb|3BP5|B Chain B, Crystal Structure Of The Mouse Pd-1 And Pd-L2 Complex
pdb|3BP6|B Chain B, Crystal Structure Of The Mouse Pd-1 Mutant And Pd-L2
Complex
Length = 202
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 12 ISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEG 71
I VQ G+Y C+ A L V V A + I + TG ++TC G
Sbjct: 71 IPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEV-QLTCQARG 129
Query: 72 HPLPQMTW 79
+PL +++W
Sbjct: 130 YPLAEVSW 137
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 197 NIGPQDSGLYRCTASNLLGEDVAEGYLTV-TGAPPIFIQRPVSTTYSTGSTSRITCLVEG 255
++ +DSG YRC + G YLTV A + I + TG ++TC G
Sbjct: 73 SVQVRDSGQYRCLV--ICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEV-QLTCQARG 129
Query: 256 HPLPQMTW 263
+PL +++W
Sbjct: 130 YPLAEVSW 137
>pdb|1IAI|H Chain H, Idiotype-Anti-Idiotype Fab Complex
Length = 219
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Query: 190 TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY------LTV----TGAPPIFIQRPVST 239
T L++ N+ +D+ Y C A Y +TV T AP ++ PV
Sbjct: 78 TAYLQINNLKNEDTATYFCARDGYYENYYAMDYWGQGTSVTVSSAKTTAPSVYPLAPVCG 137
Query: 240 TYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
+TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 138 D-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 172
>pdb|3TT3|H Chain H, Crystal Structure Of Leut In The Inward-Open Conformation
In Complex With Fab
Length = 221
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 34/103 (33%), Positives = 46/103 (44%), Gaps = 15/103 (14%)
Query: 1 TDDRRSSTELV-ISGVQREHGGRYSCVAGNPAGVY-----RGDLHVTVNA----PPIFIQ 50
T DR SST + +S + E Y C GN + +G L VTV+A PP
Sbjct: 71 TVDRSSSTAYMELSSLTSEDSAVYYCARGNYGSAWFAYWGQGTL-VTVSAAKTTPPSVYP 129
Query: 51 RPVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 91
+ T S + CLV+G+ P P +TW + SL S H
Sbjct: 130 LAPGSAAQTNSMVTLGCLVKGYFPEPVTVTW--NSGSLSSGVH 170
>pdb|3RNQ|B Chain B, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Pd-L2
Length = 201
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 12 ISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEG 71
I VQ G+Y C+ A L V V A + I + TG ++TC G
Sbjct: 70 IPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEV-QLTCQARG 128
Query: 72 HPLPQMTW 79
+PL +++W
Sbjct: 129 YPLAEVSW 136
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 197 NIGPQDSGLYRCTASNLLGEDVAEGYLTV-TGAPPIFIQRPVSTTYSTGSTSRITCLVEG 255
++ +DSG YRC + G YLTV A + I + TG ++TC G
Sbjct: 72 SVQVRDSGQYRCLV--ICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEV-QLTCQARG 128
Query: 256 HPLPQMTW 263
+PL +++W
Sbjct: 129 YPLAEVSW 136
>pdb|2WUB|L Chain L, Crystal Structure Of Hgfa In Complex With The Allosteric
Non-Inhibitory Antibody Fab40.Deltatrp
pdb|2WUB|Q Chain Q, Crystal Structure Of Hgfa In Complex With The Allosteric
Non-Inhibitory Antibody Fab40.Deltatrp
pdb|2WUC|L Chain L, Crystal Structure Of Hgfa In Complex With The Allosteric
Non- Inhibitory Antibody Fab40.Deltatrp And
Ac-Kqlr-Chloromethylketone
pdb|3K2U|L Chain L, Crystal Structure Of Hgfa In Complex With The Allosteric
Inhibitory Antibody Fab40
Length = 214
Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 10 LVISGVQREHGGRYSCVAGN--PAGVYRG---DLHVTVNAPPIFIQRPVSTTYSTGSTSR 64
L IS +Q E Y C N PA +G ++ TV AP +FI P +G+ S
Sbjct: 73 LTISSLQPEDFATYYCQQSNRAPATFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASV 132
Query: 65 ITCLVEGHPLPQMTWFHDGNSLDS 88
+ L +P + N+L S
Sbjct: 133 VCLLNNFYPREAKVQWKVDNALQS 156
>pdb|1QKZ|H Chain H, Fab Fragment (Mn14c11.6) In Complex With A Peptide Antigen
Derived From Neisseria Meningitidis P1.7 Serosubtype
Antigen And Domain Ii From Streptococcal Protein G
Length = 219
Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 15/94 (15%)
Query: 193 LRLYNIGPQDSGLYRCTASNL---------LGEDVAEGYLTVTGAPPIFIQRPVSTTYST 243
L++ ++ +D+G+Y C L G VA T AP ++ PV +T
Sbjct: 81 LQMNSLKSEDTGMYYCARDPLEYYGMDYWGQGTSVAVSSAKTT-APSVYPLAPVCGD-TT 138
Query: 244 GSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
GS+ + CLV+G+ P P +TW + SL S H
Sbjct: 139 GSSVTLGCLVKGYFPEPVTVTW--NSGSLSSGVH 170
>pdb|3THM|H Chain H, Crystal Structure Of Fas Receptor Extracellular Domain In
Complex With Fab Ep6b_b01
Length = 245
Score = 30.4 bits (67), Expect = 4.7, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 21/94 (22%)
Query: 192 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGY-------------LTVTGA----PPIFIQ 234
SLRL ++ D+ LY C LL D GY +TV+ A P +F
Sbjct: 86 SLRLTSVTAADTALYYCARRQLL--DDGTGYQWAAFDVWGQGTMVTVSSASTKGPSVFPL 143
Query: 235 RPVSTTYSTGSTSRITCLVEGH-PLPQMTWFHDG 267
P S + ++G T+ + CLV+ + P P ++ G
Sbjct: 144 APSSKS-TSGGTAALGCLVKDYFPEPVTVSWNSG 176
>pdb|3UJT|H Chain H, Structure Of The Fab Fragment Of Ab-52, An Antibody That
Binds The O- Antigen Of Francisella Tularensis
pdb|3UJT|I Chain I, Structure Of The Fab Fragment Of Ab-52, An Antibody That
Binds The O- Antigen Of Francisella Tularensis
Length = 213
Score = 30.4 bits (67), Expect = 4.8, Method: Composition-based stats.
Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 13/99 (13%)
Query: 1 TDDRRSSTELV-ISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNA-----PPIFIQRPVS 54
T D SST V +S + E Y CV G A +G L VTV+A P ++ PV
Sbjct: 71 TVDTSSSTAYVDLSSLTSEDSAVYYCVRGF-AYWGQGTL-VTVSAAKTTAPSVYPLAPVC 128
Query: 55 TTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 91
+TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 129 GD-TTGSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 164
>pdb|4AT6|A Chain A, Fab Fragment Of Antiporphyrin Antibody 14h7
pdb|4AT6|C Chain C, Fab Fragment Of Antiporphyrin Antibody 14h7
pdb|4AT6|E Chain E, Fab Fragment Of Antiporphyrin Antibody 14h7
pdb|4AT6|G Chain G, Fab Fragment Of Antiporphyrin Antibody 14h7
pdb|4AT6|H Chain H, Fab Fragment Of Antiporphyrin Antibody 14h7
pdb|4AT6|J Chain J, Fab Fragment Of Antiporphyrin Antibody 14h7
pdb|4AT6|M Chain M, Fab Fragment Of Antiporphyrin Antibody 14h7
pdb|4AT6|O Chain O, Fab Fragment Of Antiporphyrin Antibody 14h7
Length = 217
Score = 30.4 bits (67), Expect = 5.4, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 12/109 (11%)
Query: 174 KDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCT--ASNLLGEDVAEGYLTVTGA--- 228
+D+A D++ T ++L ++ +DS +Y C S LL +TV+ A
Sbjct: 65 RDKATLTADKSSS---TAYMQLSSLTSEDSAVYHCARGGSGLLAYWGQGTLVTVSSAKTT 121
Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
PP + T S + CLV+G+ P P +TW + SL S H
Sbjct: 122 PPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTW--NSGSLSSGVH 168
>pdb|2CKN|A Chain A, Nmr Structure Of The First Ig Module Of Mouse Fgfr1
Length = 95
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 170 ISWSKDEAEFVEDRNHKIHRTGS-LRLYNIGPQDSGLYRCTASNLLGED 217
I+W +D + VE +I TG + + + P DSGLY C S+ G D
Sbjct: 40 INWLRDGVQLVESNRTRI--TGEEVEVRDSIPADSGLYACVTSSPSGSD 86
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 354 ISWSKDEAEFVEDRNHKIHRTGS-LRLYNIGPQDSGLYRCTASNLLGED 401
I+W +D + VE +I TG + + + P DSGLY C S+ G D
Sbjct: 40 INWLRDGVQLVESNRTRI--TGEEVEVRDSIPADSGLYACVTSSPSGSD 86
>pdb|1WWA|X Chain X, Ngf Binding Domain Of Human Trka Receptor
pdb|1WWA|Y Chain Y, Ngf Binding Domain Of Human Trka Receptor
Length = 109
Score = 30.0 bits (66), Expect = 5.6, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 10/72 (13%)
Query: 158 IPCKPDGEPLPRISWSKDEA----------EFVEDRNHKIHRTGSLRLYNIGPQDSGLYR 207
IP DG+P P + W + + EF+E ++ R G LRL ++G Y
Sbjct: 24 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 83
Query: 208 CTASNLLGEDVA 219
A+N G+ A
Sbjct: 84 LLAANPFGQASA 95
Score = 30.0 bits (66), Expect = 5.6, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 10/72 (13%)
Query: 342 IPCKPDGEPLPRISWSKDEA----------EFVEDRNHKIHRTGSLRLYNIGPQDSGLYR 391
IP DG+P P + W + + EF+E ++ R G LRL ++G Y
Sbjct: 24 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 83
Query: 392 CTASNLLGEDVA 403
A+N G+ A
Sbjct: 84 LLAANPFGQASA 95
>pdb|1UM4|H Chain H, Catalytic Antibody 21h3 With Hapten
pdb|1UM5|H Chain H, Catalytic Antibody 21h3 With Alcohol Substrate
pdb|1UM6|H Chain H, Catalytic Antibody 21h3
Length = 217
Score = 30.0 bits (66), Expect = 5.7, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 186 KIHRTGSLRLYNIGPQDSGLYRCTASNLL--GEDVAEGYLTV-----TGAPPIFIQRPVS 238
K T L L ++ +DS +Y C S++ G + G L T P +F P S
Sbjct: 73 KSSNTAYLELSSLTSEDSAVYYCARSSMSDPGANWGPGTLVTVSSASTKGPSVFPLAPSS 132
Query: 239 TTYSTGSTSRITCLVEGH-PLPQMTWFHDG 267
+ ++G T+ + CLV+ + P P ++ G
Sbjct: 133 KS-TSGGTAALGCLVKDYFPEPVTVSWNSG 161
>pdb|3SE9|L Chain L, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc- Pg04 In Complex With Hiv-1 Gp120
pdb|4I3R|L Chain L, Crystal Structure Of The Outer Domain Of Hiv-1 Gp120 In
Complex With Vrc-pg04 Space Group P3221
pdb|4I3S|L Chain L, Crystal Structure Of The Outer Domain Of Hiv-1 Gp120 In
Complex With Vrc-pg04 Space Group P21
Length = 208
Score = 30.0 bits (66), Expect = 6.5, Method: Composition-based stats.
Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 2/114 (1%)
Query: 161 KPDGEPLPRISWSKDEAEFVEDR--NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV 218
KP P I + A + DR + + +L + + P+D Y C G+
Sbjct: 37 KPGQPPKLLIFATSKRASGIPDRFSGSQFGKQYTLTITRMEPEDFARYYCQQLEFFGQGT 96
Query: 219 AEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDS 272
AP +FI P +G+ S + L +P + N+L S
Sbjct: 97 RLEIRRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQS 150
>pdb|3TJE|H Chain H, Crystal Structure Of Fas Receptor Extracellular Domain In
Complex With Fab E09
Length = 245
Score = 30.0 bits (66), Expect = 6.7, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 21/94 (22%)
Query: 192 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGY-------------LTVTGA----PPIFIQ 234
SLRL ++ D+ LY C LL D GY +TV+ A P +F
Sbjct: 86 SLRLTSVTAADTALYYCARRQLL--DDGTGYQWAAFDVWGQGTMVTVSSASTKGPSVFPL 143
Query: 235 RPVSTTYSTGSTSRITCLVEGH-PLPQMTWFHDG 267
P S + ++G T+ + CLV+ + P P ++ G
Sbjct: 144 APSSKS-TSGGTAALGCLVKDYFPEPVTVSWNSG 176
>pdb|1WWW|X Chain X, Ngf In Complex With Domain 5 Of The Trka Receptor
pdb|1WWW|Y Chain Y, Ngf In Complex With Domain 5 Of The Trka Receptor
Length = 101
Score = 30.0 bits (66), Expect = 6.7, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 10/72 (13%)
Query: 158 IPCKPDGEPLPRISWSKDEA----------EFVEDRNHKIHRTGSLRLYNIGPQDSGLYR 207
IP DG+P P + W + + EF+E ++ R G LRL ++G Y
Sbjct: 20 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79
Query: 208 CTASNLLGEDVA 219
A+N G+ A
Sbjct: 80 LLAANPFGQASA 91
Score = 30.0 bits (66), Expect = 6.7, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 10/72 (13%)
Query: 342 IPCKPDGEPLPRISWSKDEA----------EFVEDRNHKIHRTGSLRLYNIGPQDSGLYR 391
IP DG+P P + W + + EF+E ++ R G LRL ++G Y
Sbjct: 20 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79
Query: 392 CTASNLLGEDVA 403
A+N G+ A
Sbjct: 80 LLAANPFGQASA 91
>pdb|4ERS|L Chain L, A Molecular Basis For Negative Regulation Of The Glucagon
Receptor
Length = 214
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 10 LVISGVQREHGGRYSCVAGNP-----AGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSR 64
L IS VQ E Y C+ N G + ++ TV AP +FI P +G+ S
Sbjct: 73 LTISSVQPEDFVTYYCLQHNSNPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASV 132
Query: 65 ITCLVEGHPLPQMTWFHDGNSLDSDD 90
+ L +P + N+L S +
Sbjct: 133 VCLLNNFYPREAKVQWKVDNALQSGN 158
>pdb|1V7M|H Chain H, Human Thrombopoietin Functional Domain Complexed To
Neutralizing Antibody Tn1 Fab
pdb|1V7M|I Chain I, Human Thrombopoietin Functional Domain Complexed To
Neutralizing Antibody Tn1 Fab
pdb|1V7N|H Chain H, Human Thrombopoietin Functional Domain Complexed To
Neutralizing Antibody Tn1 Fab
pdb|1V7N|I Chain I, Human Thrombopoietin Functional Domain Complexed To
Neutralizing Antibody Tn1 Fab
pdb|1V7N|J Chain J, Human Thrombopoietin Functional Domain Complexed To
Neutralizing Antibody Tn1 Fab
pdb|1V7N|K Chain K, Human Thrombopoietin Functional Domain Complexed To
Neutralizing Antibody Tn1 Fab
pdb|2ZKH|H Chain H, Human Thrombopoietin Neutralizing Antibody Tn1 Fab
Length = 217
Score = 30.0 bits (66), Expect = 6.8, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 2 DDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNA----PPIFIQRPVSTTY 57
DD +SS L ++ ++ E G Y C + +G L VTV+A PP +
Sbjct: 75 DDSKSSVYLQMNSLRAEDTGIYYCSGWSFLYWGQGTL-VTVSAAKTTPPSVYPLAPGSAA 133
Query: 58 STGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 91
T S + CLV+G+ P P +TW + SL S H
Sbjct: 134 QTNSMVTLGCLVKGYFPEPVTVTW--NSGSLSSGVH 167
>pdb|1Y0L|L Chain L, Catalytic Elimination Antibody 34e4 In Complex With Hapten
pdb|1Y0L|A Chain A, Catalytic Elimination Antibody 34e4 In Complex With Hapten
pdb|1Y0L|C Chain C, Catalytic Elimination Antibody 34e4 In Complex With Hapten
pdb|1Y0L|E Chain E, Catalytic Elimination Antibody 34e4 In Complex With Hapten
pdb|1Y18|L Chain L, Fab Fragment Of Catalytic Elimination Antibody 34e4
E(H50)d Mutant In Complex With Hapten
pdb|1Y18|A Chain A, Fab Fragment Of Catalytic Elimination Antibody 34e4
E(H50)d Mutant In Complex With Hapten
pdb|1Y18|C Chain C, Fab Fragment Of Catalytic Elimination Antibody 34e4
E(H50)d Mutant In Complex With Hapten
pdb|1Y18|E Chain E, Fab Fragment Of Catalytic Elimination Antibody 34e4
E(H50)d Mutant In Complex With Hapten
pdb|3CFJ|L Chain L, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Orthorhombic Crystal Form
pdb|3CFJ|A Chain A, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Orthorhombic Crystal Form
pdb|3CFJ|C Chain C, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Orthorhombic Crystal Form
pdb|3CFJ|E Chain E, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Orthorhombic Crystal Form
pdb|3CFK|L Chain L, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|A Chain A, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|C Chain C, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|E Chain E, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|G Chain G, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|J Chain J, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|M Chain M, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|O Chain O, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
Length = 216
Score = 30.0 bits (66), Expect = 6.9, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
Query: 10 LVISGVQREHGGRYSCVAGNP-----AGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSR 64
L I+G Q E Y C N G + ++ TV AP +FI P +G+ S
Sbjct: 75 LTITGAQTEDEAIYFCALWNSNHLVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASV 134
Query: 65 ITCLVEGHPLPQMTWFHDGNSLDS 88
+ L +P + N+L S
Sbjct: 135 VCLLNNFYPREAKVQWKVDNALQS 158
>pdb|2XKN|B Chain B, Crystal Structure Of The Fab Fragment Of The Anti-Egfr
Antibody 7a7
pdb|2XKN|D Chain D, Crystal Structure Of The Fab Fragment Of The Anti-Egfr
Antibody 7a7
Length = 216
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 2 DDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGD-LHVTVNA-----PPIFIQRPVST 55
D+ +++ L +S ++ E Y C + Y G VTV+A P ++ PV
Sbjct: 73 DNVKNTLYLQMSSLRSEDTAMYYCARDSGGFAYWGQGTLVTVSAAKTTPPSVYPLAPVCG 132
Query: 56 TYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 91
+TGS+ + CLV+G+ P P +TW + SL S H
Sbjct: 133 D-TTGSSVTLGCLVKGYFPEPVTVTW--NSGSLSSGVH 167
>pdb|3V0A|C Chain C, 2.7 Angstrom Crystal Structure Of BontAI IN COMPLEX WITH
NTNHA
Length = 152
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
Query: 354 ISWSKDEAE--FVEDRNHKIHRTGSLRLYNIGPQDSGLYRC-----TASNLLGEDVAEGY 406
+W D A+ F R+ T L++ N+ P+D+G+Y C T + + G +G
Sbjct: 65 TAWDGDSAKGRFTTSRDDA-KNTLYLQMSNLQPEDTGVYYCATGYRTDTRIPGGSWGQGT 123
Query: 407 LTVTGENSVEPAPHTSREP 425
P P TS P
Sbjct: 124 QVTVSSEPKTPKPQTSGAP 142
>pdb|1SM3|H Chain H, Crystal Structure Of The Tumor Specific Antibody Sm3
Complex With Its Peptide Epitope
Length = 218
Score = 29.6 bits (65), Expect = 7.5, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Query: 2 DDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNA----PPIFIQRPVSTTY 57
DD +SS L ++ ++ E G Y C + VTV++ PP P++
Sbjct: 75 DDSKSSVYLQMNNLRAEDTGIYYCTGVGQFAYWGQGTTVTVSSAKTTPPTVY--PLAPGS 132
Query: 58 STGSTSRIT--CLVEGH-PLP-QMTWFHDGNSLDSDDH 91
+ S S +T CLV+G+ P P +TW + SL S H
Sbjct: 133 NAASQSMVTLGCLVKGYFPEPVTVTW--NSGSLASGVH 168
>pdb|3QEH|B Chain B, Crystal Structure Of Human N12-I15, An Adcc And
Non-Neutralizing Anti- Hiv-1 Env Antibody
pdb|3QEH|D Chain D, Crystal Structure Of Human N12-I15, An Adcc And
Non-Neutralizing Anti- Hiv-1 Env Antibody
pdb|3QEH|F Chain F, Crystal Structure Of Human N12-I15, An Adcc And
Non-Neutralizing Anti- Hiv-1 Env Antibody
pdb|3QEH|H Chain H, Crystal Structure Of Human N12-I15, An Adcc And
Non-Neutralizing Anti- Hiv-1 Env Antibody
Length = 218
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVY----RGDLHVTVNAPPIFIQRPVSTTYSTGSTSRI 65
L IS V+ E G Y C+ + + + ++ TV AP +FI P +G+ S +
Sbjct: 78 LKISRVEAEDVGVYYCMQAKESPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVV 137
Query: 66 TCLVEGHPLPQMTWFHDGNSLDSDD 90
L +P + N+L S +
Sbjct: 138 CLLNNFYPREAKVQWKVDNALQSGN 162
>pdb|2FJH|L Chain L, Structure Of The B20-4 Fab, A Phage Derived Fab Fragment,
In Complex With Vegf
pdb|2FJH|A Chain A, Structure Of The B20-4 Fab, A Phage Derived Fab Fragment,
In Complex With Vegf
Length = 214
Score = 29.6 bits (65), Expect = 7.7, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRG-----DLHVTVNAPPIFIQRPVSTTYSTGSTSR 64
L IS +Q E Y C N + + G ++ TV AP +FI P +G+ S
Sbjct: 73 LTISSLQPEDFATYYCQQSNTSPLTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASV 132
Query: 65 ITCLVEGHPLPQMTWFHDGNSLDS 88
+ L +P + N+L S
Sbjct: 133 VCLLNNFYPREAKVQWKVDNALQS 156
>pdb|3H0T|B Chain B, Hepcidin-Fab Complex
Length = 237
Score = 29.6 bits (65), Expect = 7.8, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 20/120 (16%)
Query: 164 GEPLPRISWSKDEAEFVEDR---NHKIHRTG-SLRLYNIGPQDSGLYRCT-------ASN 212
G R W D A V+ R N + SL+L ++ P+D+ +Y C A +
Sbjct: 51 GRTYYRSKWFNDYAVSVQSRITINPDTSKNQFSLQLNSVTPEDTAVYYCARGIVFSYAMD 110
Query: 213 LLGEDVAEGYLTVTGA----PPIFIQRPVSTTYSTGSTSRITCLVEGH-PLPQMTWFHDG 267
+ G+ +TV+ A P +F P S + ++G T+ + CLV+ + P P ++ G
Sbjct: 111 VWGQGTT---VTVSSASTKGPSVFPLAPSSKS-TSGGTAALGCLVKDYFPEPVTVSWNSG 166
>pdb|3I2C|H Chain H, Crystal Structure Of Anti-Il-23 Antibody Cnto4088
Length = 222
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 16/118 (13%)
Query: 171 SWSKDEAEFVEDRNHKIHRTGS-----LRLYNIGPQDSGLYRCTASNLLGEDVAEG---Y 222
+++ D A+ V+DR I R S L + N+ +D+ +Y C + G G
Sbjct: 57 NYATDYADPVKDR-FTISRDDSQGLLYLLMNNLKTEDTAMYYCMREGIYGSFAYWGQGTL 115
Query: 223 LTVTGA---PPIFIQRPVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
+TV+ A PP + T S + CLV+G+ P P +TW + SL S H
Sbjct: 116 VTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTW--NSGSLSSGVH 171
>pdb|3S35|H Chain H, Structural Basis For The Function Of Two Anti-Vegf
Receptor Antibodies
Length = 217
Score = 29.6 bits (65), Expect = 7.9, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 12/109 (11%)
Query: 174 KDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV-AEGY-LTVTGA--- 228
KD+A D++ T + L + +DS +Y CT + D +G LTV+ A
Sbjct: 65 KDKATLTADKSSS---TVYMELSRLTSEDSAVYFCTRHDGTNFDYWGQGTTLTVSSAKTT 121
Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
PP + T S + CLV+G+ P P +TW + SL S H
Sbjct: 122 PPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTW--NSGSLSSGVH 168
>pdb|2AAB|H Chain H, Structural Basis Of Antigen Mimicry In A Clinically
Relevant Melanoma Antigen System
Length = 243
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 17/97 (17%)
Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGA------------PPIFIQRPVSTT 240
L++ ++ +D+ +Y C SN +G V Y V GA PP +
Sbjct: 81 LQMTSLRSEDTAMYYCARSNYVGYHV-RWYFDVWGAGTTVTVSSAKTTPPSVYPLAPGSA 139
Query: 241 YSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
T S + CLV+G+ P P +TW + SL S H
Sbjct: 140 AQTNSMVTLGCLVKGYFPEPVTVTW--NSGSLSSGVH 174
>pdb|3JWO|L Chain L, Structure Of Hiv-1 Gp120 With Gp41-Interactive Region:
Layered Architecture And Basis Of Conformational
Mobility
Length = 209
Score = 29.6 bits (65), Expect = 8.7, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHV----TVNAPPIFIQRPVSTTYSTGSTSRI 65
L I+ +Q E Y C N + G V TV AP +FI P +G+ S +
Sbjct: 73 LTINSLQPEDFATYYCQQANSFFTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVV 132
Query: 66 TCLVEGHPLPQMTWFHDGNSLDS 88
L +P + N+L S
Sbjct: 133 CLLNNFYPREAKVQWKVDNALQS 155
>pdb|4HWE|L Chain L, Crystal Structure Of Ectodomain 3 Of The Il-13 Receptor
Alpha1 In Complex With A Human Neutralizing Monoclonal
Antibody Fragment
Length = 211
Score = 29.6 bits (65), Expect = 8.9, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 31/81 (38%)
Query: 192 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITC 251
+L + + P+D +Y C G+ AP +FI P +G+ S +
Sbjct: 73 TLTISRLEPEDFAVYYCQQYETFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCL 132
Query: 252 LVEGHPLPQMTWFHDGNSLDS 272
L +P + N+L S
Sbjct: 133 LNNFYPREAKVQWKVDNALQS 153
>pdb|1RZ7|L Chain L, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 48d
pdb|4DVR|L Chain L, Crystal Structure Of Yu2 Gp120 Core In Complex With Fab
48d And Nbd- 557
Length = 212
Score = 29.6 bits (65), Expect = 8.9, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHV----TVNAPPIFIQRPVSTTYSTGSTSRI 65
L I+ +Q E Y C N + G V TV AP +FI P +G+ S +
Sbjct: 73 LTINSLQPEDFATYYCQQANSFFTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVV 132
Query: 66 TCLVEGHPLPQMTWFHDGNSLDS 88
L +P + N+L S
Sbjct: 133 CLLNNFYPREAKVQWKVDNALQS 155
>pdb|3JWD|L Chain L, Structure Of Hiv-1 Gp120 With Gp41-Interactive Region:
Layered Architecture And Basis Of Conformational
Mobility
pdb|3JWD|O Chain O, Structure Of Hiv-1 Gp120 With Gp41-Interactive Region:
Layered Architecture And Basis Of Conformational
Mobility
Length = 213
Score = 29.6 bits (65), Expect = 8.9, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHV----TVNAPPIFIQRPVSTTYSTGSTSRI 65
L I+ +Q E Y C N + G V TV AP +FI P +G+ S +
Sbjct: 73 LTINSLQPEDFATYYCQQANSFFTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVV 132
Query: 66 TCLVEGHPLPQMTWFHDGNSLDS 88
L +P + N+L S
Sbjct: 133 CLLNNFYPREAKVQWKVDNALQS 155
>pdb|4HWB|L Chain L, Crystal Structure Of Ectodomain 3 Of The Il-13 Receptor
Alpha 1 In Complex With A Human Neutralizing Monoclonal
Antibody Fragment
Length = 212
Score = 29.6 bits (65), Expect = 9.1, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 31/81 (38%)
Query: 192 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITC 251
+L + + P+D +Y C G+ AP +FI P +G+ S +
Sbjct: 73 TLTISRLEPEDFAVYYCQQYETFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCL 132
Query: 252 LVEGHPLPQMTWFHDGNSLDS 272
L +P + N+L S
Sbjct: 133 LNNFYPREAKVQWKVDNALQS 153
>pdb|4F9L|A Chain A, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 20.1 Single Chain Antibody
pdb|4F9L|B Chain B, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 20.1 Single Chain Antibody
pdb|4F9P|A Chain A, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 103.2 Single Chain Antibody
pdb|4F9P|B Chain B, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 103.2 Single Chain Antibody
Length = 220
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 60/140 (42%), Gaps = 16/140 (11%)
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC 160
L ++ V SD+G Y C Q+ + +++ +++ + V D++ + + C
Sbjct: 85 LRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHV----DVKGYKDGGIHLEC 140
Query: 161 KPDG-EPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNI-------GPQDSGLYRCTASN 212
+ G P P+I WS ++ E + + G + LY + G G+ S+
Sbjct: 141 RSTGWYPQPQIQWSNNKGENIPTVEAPVVADG-VGLYAVAASVIMRGSSGEGVSCTIRSS 199
Query: 213 LLGEDVAEGYLTVTGAPPIF 232
LLG E +++ A P F
Sbjct: 200 LLG---LEKTASISIADPFF 216
>pdb|4F80|A Chain A, Crystal Structure Of The Human Btn3a1 Ectodomain
Length = 226
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 60/140 (42%), Gaps = 16/140 (11%)
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC 160
L ++ V SD+G Y C Q+ + +++ +++ + V D++ + + C
Sbjct: 85 LRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHV----DVKGYKDGGIHLEC 140
Query: 161 KPDG-EPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNI-------GPQDSGLYRCTASN 212
+ G P P+I WS ++ E + + G + LY + G G+ S+
Sbjct: 141 RSTGWYPQPQIQWSNNKGENIPTVEAPVVADG-VGLYAVAASVIMRGSSGEGVSCTIRSS 199
Query: 213 LLGEDVAEGYLTVTGAPPIF 232
LLG E +++ A P F
Sbjct: 200 LLG---LEKTASISIADPFF 216
>pdb|2A6D|H Chain H, Crystal Structure Analysis Of The Anti-Arsonate Germline
Antibody 36-65 In Complex With A Phage Display Derived
Dodecapeptide Rlliadppspre
pdb|2A6D|B Chain B, Crystal Structure Analysis Of The Anti-Arsonate Germline
Antibody 36-65 In Complex With A Phage Display Derived
Dodecapeptide Rlliadppspre
pdb|2A6I|B Chain B, Crystal Structure Analysis Of The Anti-Arsonate Germline
Antibody 36-65 In Complex With A Phage Display Derived
Dodecapeptide Klasipthtspl
pdb|2A6J|H Chain H, Crystal Structure Analysis Of The Anti-Arsonate Germline
Antibody 36- 65
pdb|2A6J|B Chain B, Crystal Structure Analysis Of The Anti-Arsonate Germline
Antibody 36- 65
pdb|2A6K|B Chain B, Crystal Structure Analysis Of The Germline Antibody 36-65
Fab In Complex With The Dodecapeptide Slgdnltnhnlr
pdb|2A6K|H Chain H, Crystal Structure Analysis Of The Germline Antibody 36-65
Fab In Complex With The Dodecapeptide Slgdnltnhnlr
Length = 222
Score = 29.6 bits (65), Expect = 9.3, Method: Composition-based stats.
Identities = 43/161 (26%), Positives = 61/161 (37%), Gaps = 39/161 (24%)
Query: 152 AGSSVEIPCKPDGEPLPR--ISWSKDEA----EFVEDRN--------------------H 185
AGSSV++ CK G I+W K E++ N
Sbjct: 14 AGSSVKMSCKASGYTFTSYGINWVKQRPGQGLEWIGYINPGNGYTKYNEKFKGKTTLTVD 73
Query: 186 KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY------LTVTGA---PPIFIQRP 236
K T ++L ++ +DS +Y C S G Y LTV+ A PP
Sbjct: 74 KSSSTAYMQLRSLTSEDSAVYFCARSVYYGGSYYFDYWGQGTTLTVSSAKTTPPSVYPLA 133
Query: 237 VSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
+ T S + CLV+G+ P P +TW + SL S H
Sbjct: 134 PGSAAQTNSMVTLGCLVKGYFPEPVTVTW--NSGSLSSGVH 172
>pdb|1FRG|H Chain H, Crystal Structure, Sequence, And Epitope Mapping Of A
Peptide Complex Of An Anti-Influenza Ha Peptide Antibody
Fab 26(Slash)9: Fine-Tuning Antibody Specificity
Length = 220
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 14/94 (14%)
Query: 193 LRLYNIGPQDSGLYRCTASNLLGED----VAEGYLTV-----TGAPPIFIQRPVSTTYST 243
L + ++ +D+GLY C E G L T AP ++ PV +T
Sbjct: 81 LEMTSLKSEDAGLYYCARRERYDEKGFAYWGRGTLVTVSAAKTTAPSVYPLAPVCGD-TT 139
Query: 244 GSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
GS+ + CLV+G+ P P +TW + SL S H
Sbjct: 140 GSSVTLGCLVKGYFPEPVTLTW--NSGSLSSGVH 171
>pdb|3S62|H Chain H, Structure Of Fab Fragment Of Malaria Transmission Blocking
Antibody 2a8 Against P. Vivax P25 Protein
Length = 216
Score = 29.3 bits (64), Expect = 9.9, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 15/99 (15%)
Query: 186 KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA---EGYLTVTGA----PPIFIQRPVS 238
K T ++L ++ +DS +Y C G DVA +G L A PP
Sbjct: 74 KSSSTAYMQLSSLTSEDSAVYYCAR----GADVAYWGQGTLVTVSAAKTTPPSVYPLAPG 129
Query: 239 TTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH 275
+ T S + CLV+G+ P P +TW + SL S H
Sbjct: 130 SAAQTNSMVTLGCLVKGYFPEPVTVTW--NSGSLSSGVH 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,406,373
Number of Sequences: 62578
Number of extensions: 1379774
Number of successful extensions: 6871
Number of sequences better than 100.0: 353
Number of HSP's better than 100.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 227
Number of HSP's that attempted gapping in prelim test: 4962
Number of HSP's gapped (non-prelim): 1286
length of query: 940
length of database: 14,973,337
effective HSP length: 108
effective length of query: 832
effective length of database: 8,214,913
effective search space: 6834807616
effective search space used: 6834807616
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)