Query psy11143
Match_columns 940
No_of_seqs 561 out of 3533
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 19:08:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11143.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11143hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 3.6E-49 7.7E-54 469.5 44.1 444 7-465 95-559 (1051)
2 KOG3513|consensus 100.0 1.9E-45 4.1E-50 437.8 42.8 404 6-415 191-617 (1051)
3 KOG2408|consensus 100.0 7.1E-46 1.5E-50 441.3 10.1 221 484-867 462-687 (719)
4 PF03098 An_peroxidase: Animal 100.0 3.8E-42 8.2E-47 407.1 3.3 223 484-867 302-526 (530)
5 KOG4222|consensus 100.0 8.7E-37 1.9E-41 358.6 27.4 393 19-415 103-514 (1281)
6 KOG4222|consensus 100.0 6.5E-36 1.4E-40 351.3 26.4 450 44-505 30-508 (1281)
7 KOG4221|consensus 100.0 3.4E-35 7.3E-40 346.9 31.7 364 44-414 40-420 (1381)
8 KOG4221|consensus 100.0 8.7E-35 1.9E-39 343.4 31.9 406 6-414 94-522 (1381)
9 PLN02283 alpha-dioxygenase 100.0 1.5E-31 3.3E-36 314.9 4.2 212 484-863 373-601 (633)
10 KOG4194|consensus 100.0 2.1E-27 4.5E-32 263.9 23.0 274 43-319 501-797 (873)
11 KOG4194|consensus 99.9 1E-26 2.2E-31 258.4 21.9 276 135-413 500-799 (873)
12 KOG2408|consensus 99.9 3.3E-28 7.1E-33 290.5 6.4 161 632-939 114-275 (719)
13 PHA02785 IL-beta-binding prote 99.9 2.2E-25 4.7E-30 249.1 28.4 251 147-402 35-319 (326)
14 PHA02785 IL-beta-binding prote 99.9 3.3E-25 7.1E-30 247.6 29.0 248 56-309 37-318 (326)
15 PHA02826 IL-1 receptor-like pr 99.7 6.5E-17 1.4E-21 170.7 18.3 158 146-310 30-215 (227)
16 PHA02826 IL-1 receptor-like pr 99.7 1.8E-16 4E-21 167.3 19.3 155 237-399 30-212 (227)
17 KOG3515|consensus 99.7 8.4E-16 1.8E-20 181.1 19.0 406 6-414 57-497 (741)
18 KOG3515|consensus 99.6 3.3E-15 7.1E-20 176.1 17.6 356 46-411 8-397 (741)
19 PF03098 An_peroxidase: Animal 99.6 1.4E-17 3.1E-22 197.8 -2.9 40 669-708 1-40 (530)
20 cd05762 Ig8_MLCK Eighth immuno 99.5 7.7E-14 1.7E-18 128.2 13.0 92 323-414 1-95 (98)
21 cd05762 Ig8_MLCK Eighth immuno 99.5 2.7E-13 5.9E-18 124.5 13.5 94 46-139 1-96 (98)
22 cd05851 Ig3_Contactin-1 Third 99.5 1.7E-13 3.6E-18 123.3 11.1 88 322-410 1-88 (88)
23 cd05851 Ig3_Contactin-1 Third 99.4 9.3E-13 2E-17 118.5 11.8 87 45-133 1-87 (88)
24 cd05852 Ig5_Contactin-1 Fifth 99.4 4.7E-13 1E-17 115.9 9.2 73 337-409 1-73 (73)
25 cd05745 Ig3_Peroxidasin Third 99.4 5.1E-13 1.1E-17 116.0 9.2 74 336-409 1-74 (74)
26 cd04968 Ig3_Contactin_like Thi 99.4 2.9E-12 6.3E-17 115.2 11.7 88 322-410 1-88 (88)
27 cd05747 Ig5_Titin_like M5, fif 99.4 2.7E-12 5.9E-17 116.4 11.4 87 321-407 2-91 (92)
28 cd05723 Ig4_Neogenin Fourth im 99.4 2.7E-12 5.8E-17 110.5 10.1 71 339-409 1-71 (71)
29 cd05728 Ig4_Contactin-2-like F 99.4 3.8E-12 8.3E-17 113.7 10.2 84 325-409 2-85 (85)
30 cd04975 Ig4_SCFR_like Fourth i 99.4 4.6E-12 9.9E-17 116.8 10.7 80 331-410 12-100 (101)
31 cd05892 Ig_Myotilin_C C-termin 99.4 3.6E-12 7.9E-17 110.9 9.5 70 340-409 1-75 (75)
32 PF07679 I-set: Immunoglobulin 99.4 1.1E-11 2.4E-16 111.4 13.1 87 323-409 1-90 (90)
33 cd05747 Ig5_Titin_like M5, fif 99.3 8.4E-12 1.8E-16 113.2 12.2 88 44-131 2-91 (92)
34 cd04975 Ig4_SCFR_like Fourth i 99.3 9.2E-12 2E-16 114.8 11.8 82 53-134 11-100 (101)
35 cd05730 Ig3_NCAM-1_like Third 99.3 8.3E-12 1.8E-16 113.9 11.3 90 322-411 1-94 (95)
36 cd04969 Ig5_Contactin_like Fif 99.3 5.3E-12 1.1E-16 109.2 9.3 73 337-409 1-73 (73)
37 PF07679 I-set: Immunoglobulin 99.3 1.3E-11 2.9E-16 110.9 12.2 88 46-133 1-90 (90)
38 cd05730 Ig3_NCAM-1_like Third 99.3 1.1E-11 2.4E-16 113.0 11.8 91 45-135 1-94 (95)
39 cd05735 Ig8_DSCAM Eight immuno 99.3 1.2E-11 2.5E-16 111.4 11.6 78 337-414 1-86 (88)
40 cd05745 Ig3_Peroxidasin Third 99.3 7.6E-12 1.7E-16 108.6 9.7 74 243-317 1-74 (74)
41 cd05893 Ig_Palladin_C C-termin 99.3 6.2E-12 1.4E-16 109.5 9.1 70 340-409 1-75 (75)
42 cd05737 Ig_Myomesin_like_C C-t 99.3 1.2E-11 2.7E-16 112.1 11.2 82 328-409 7-92 (92)
43 cd04968 Ig3_Contactin_like Thi 99.3 1.9E-11 4.2E-16 109.8 12.4 87 45-133 1-87 (88)
44 cd05737 Ig_Myomesin_like_C C-t 99.3 1.9E-11 4.1E-16 110.9 12.4 83 51-133 7-92 (92)
45 cd05865 Ig1_NCAM-1 First immun 99.3 1.5E-11 3.4E-16 112.3 11.7 84 326-409 4-95 (96)
46 cd05869 Ig5_NCAM-1 Fifth immun 99.3 1.4E-11 3.1E-16 112.9 11.2 88 322-409 2-97 (97)
47 cd05852 Ig5_Contactin-1 Fifth 99.3 1E-11 2.2E-16 107.5 9.3 73 244-317 1-73 (73)
48 cd05894 Ig_C5_MyBP-C C5 immuno 99.3 1.8E-11 4E-16 109.6 11.1 79 331-409 4-86 (86)
49 cd05867 Ig4_L1-CAM_like Fourth 99.3 1.6E-11 3.5E-16 107.1 10.6 72 337-409 1-75 (76)
50 cd05746 Ig4_Peroxidasin Fourth 99.3 6.9E-12 1.5E-16 107.3 8.0 68 340-407 1-68 (69)
51 cd05870 Ig5_NCAM-2 Fifth immun 99.3 2E-11 4.4E-16 112.1 11.6 87 322-409 2-98 (98)
52 cd07693 Ig1_Robo First immunog 99.3 2.1E-11 4.5E-16 111.7 11.7 88 322-409 1-99 (100)
53 cd04972 Ig_TrkABC_d4 Fourth do 99.3 1.5E-11 3.3E-16 111.1 10.5 83 327-409 5-90 (90)
54 cd05868 Ig4_NrCAM Fourth immun 99.3 1.7E-11 3.7E-16 107.1 10.0 73 337-409 1-75 (76)
55 cd05726 Ig4_Robo Fhird immunog 99.3 1.8E-11 3.9E-16 110.6 10.5 78 337-414 1-86 (90)
56 cd05771 IgC_Tapasin_R Tapasin- 99.3 4.9E-11 1.1E-15 116.9 14.4 116 8-123 1-132 (139)
57 cd05859 Ig4_PDGFR-alpha Fourth 99.3 2.5E-11 5.4E-16 112.0 11.4 80 331-410 12-100 (101)
58 cd05728 Ig4_Contactin-2-like F 99.3 2.1E-11 4.6E-16 108.9 10.4 84 48-133 2-85 (85)
59 cd04972 Ig_TrkABC_d4 Fourth do 99.3 3.5E-11 7.6E-16 108.6 11.9 85 49-133 4-90 (90)
60 cd05894 Ig_C5_MyBP-C C5 immuno 99.3 4.6E-11 9.9E-16 107.0 12.2 80 54-133 4-86 (86)
61 cd05850 Ig1_Contactin-2 First 99.3 6.3E-11 1.4E-15 108.0 13.0 86 46-131 2-92 (94)
62 cd04978 Ig4_L1-NrCAM_like Four 99.3 2.5E-11 5.4E-16 105.6 9.8 73 337-409 1-75 (76)
63 cd05876 Ig3_L1-CAM Third immun 99.3 1.6E-11 3.4E-16 105.7 8.4 71 340-410 1-71 (71)
64 cd05854 Ig6_Contactin-2 Sixth 99.3 3.3E-11 7.2E-16 107.6 10.7 76 338-413 1-85 (85)
65 cd05848 Ig1_Contactin-5 First 99.3 5.4E-11 1.2E-15 108.4 12.2 82 46-127 2-87 (94)
66 cd05867 Ig4_L1-CAM_like Fourth 99.3 4.2E-11 9.1E-16 104.5 11.0 74 60-133 1-75 (76)
67 cd05744 Ig_Myotilin_C_like Imm 99.3 2.7E-11 5.8E-16 105.5 9.7 70 340-409 1-75 (75)
68 cd05865 Ig1_NCAM-1 First immun 99.3 5E-11 1.1E-15 108.9 11.9 86 48-133 3-95 (96)
69 cd05849 Ig1_Contactin-1 First 99.3 6.3E-11 1.4E-15 107.7 12.3 85 322-407 1-91 (93)
70 cd05868 Ig4_NrCAM Fourth immun 99.2 3.8E-11 8.2E-16 104.8 10.0 74 60-133 1-75 (76)
71 cd05853 Ig6_Contactin-4 Sixth 99.2 3.2E-11 6.9E-16 107.2 9.5 76 338-413 1-85 (85)
72 cd05848 Ig1_Contactin-5 First 99.2 6.1E-11 1.3E-15 108.1 11.6 81 323-403 2-87 (94)
73 cd05892 Ig_Myotilin_C C-termin 99.2 3.6E-11 7.8E-16 104.6 9.5 71 247-317 1-75 (75)
74 cd05723 Ig4_Neogenin Fourth im 99.2 5.3E-11 1.1E-15 102.5 10.5 71 246-317 1-71 (71)
75 cd05859 Ig4_PDGFR-alpha Fourth 99.2 7.2E-11 1.6E-15 109.0 12.0 81 54-134 12-100 (101)
76 cd05863 Ig2_VEGFR-3 Second imm 99.2 3.3E-11 7.2E-16 102.2 8.7 66 340-410 1-66 (67)
77 cd05732 Ig5_NCAM-1_like Fifth 99.2 4.5E-11 9.7E-16 109.1 10.3 87 322-409 2-96 (96)
78 cd05866 Ig1_NCAM-2 First immun 99.2 8.1E-11 1.7E-15 106.6 11.6 83 326-409 4-91 (92)
79 cd05748 Ig_Titin_like Immunogl 99.2 5.8E-11 1.2E-15 103.0 10.2 71 339-409 1-74 (74)
80 cd04970 Ig6_Contactin_like Six 99.2 4.2E-11 9.2E-16 106.9 9.3 76 338-413 1-85 (85)
81 cd05857 Ig2_FGFR Second immuno 99.2 7.5E-11 1.6E-15 105.0 10.8 78 332-409 4-85 (85)
82 cd07693 Ig1_Robo First immunog 99.2 9E-11 2E-15 107.4 11.7 89 45-133 1-99 (100)
83 cd05773 Ig8_hNephrin_like Eigh 99.2 9.8E-11 2.1E-15 109.7 12.0 93 321-413 3-108 (109)
84 cd05764 Ig_2 Subgroup of the i 99.2 6.8E-11 1.5E-15 102.5 10.1 73 337-409 1-74 (74)
85 cd05850 Ig1_Contactin-2 First 99.2 1.5E-10 3.2E-15 105.6 12.7 84 323-407 2-92 (94)
86 cd05849 Ig1_Contactin-1 First 99.2 1.2E-10 2.6E-15 105.9 12.1 86 45-131 1-91 (93)
87 cd05738 Ig2_RPTP_IIa_LAR_like 99.2 4.1E-11 8.9E-16 104.0 8.5 71 340-410 1-74 (74)
88 cd05857 Ig2_FGFR Second immuno 99.2 9.6E-11 2.1E-15 104.4 11.0 79 55-133 4-85 (85)
89 cd04969 Ig5_Contactin_like Fif 99.2 6.5E-11 1.4E-15 102.4 9.6 73 244-317 1-73 (73)
90 cd05893 Ig_Palladin_C C-termin 99.2 5.9E-11 1.3E-15 103.3 9.3 71 63-133 1-75 (75)
91 cd05866 Ig1_NCAM-2 First immun 99.2 1.4E-10 3E-15 105.1 12.0 85 48-133 3-91 (92)
92 cd05725 Ig3_Robo Third immunog 99.2 5.4E-11 1.2E-15 101.7 8.8 69 340-409 1-69 (69)
93 cd05724 Ig2_Robo Second immuno 99.2 8.8E-11 1.9E-15 104.7 10.6 82 328-409 2-86 (86)
94 cd05863 Ig2_VEGFR-3 Second imm 99.2 6.5E-11 1.4E-15 100.5 9.1 66 63-134 1-66 (67)
95 cd05891 Ig_M-protein_C C-termi 99.2 1.1E-10 2.3E-15 106.0 11.0 81 329-409 8-92 (92)
96 cd05722 Ig1_Neogenin First imm 99.2 9.8E-11 2.1E-15 106.8 10.7 85 325-409 2-95 (95)
97 cd05740 Ig_CEACAM_D4 Fourth im 99.2 1E-10 2.3E-15 105.8 10.8 79 329-409 10-90 (91)
98 cd05740 Ig_CEACAM_D4 Fourth im 99.2 1.2E-10 2.7E-15 105.3 11.2 81 51-133 9-90 (91)
99 cd05869 Ig5_NCAM-1 Fifth immun 99.2 1.8E-10 3.9E-15 105.6 12.4 89 45-133 2-97 (97)
100 cd05743 Ig_Perlecan_D2_like Im 99.2 8.6E-11 1.9E-15 103.1 9.8 73 337-409 1-76 (78)
101 cd05735 Ig8_DSCAM Eight immuno 99.2 1.9E-10 4.2E-15 103.4 12.2 79 60-138 1-86 (88)
102 cd05891 Ig_M-protein_C C-termi 99.2 1.6E-10 3.5E-15 104.8 11.8 83 51-133 7-92 (92)
103 cd05731 Ig3_L1-CAM_like Third 99.2 5.9E-11 1.3E-15 101.8 8.3 71 340-410 1-71 (71)
104 cd04978 Ig4_L1-NrCAM_like Four 99.2 1.2E-10 2.7E-15 101.3 10.4 74 60-133 1-75 (76)
105 cd05739 Ig3_RPTP_IIa_LAR_like 99.2 1E-10 2.2E-15 100.1 9.5 69 337-408 1-69 (69)
106 cd05870 Ig5_NCAM-2 Fifth immun 99.2 1.8E-10 3.9E-15 105.8 11.7 88 45-133 2-98 (98)
107 cd04976 Ig2_VEGFR Second immun 99.2 9.6E-11 2.1E-15 100.9 9.1 70 340-410 1-70 (71)
108 cd04973 Ig1_FGFR First immunog 99.2 1.5E-10 3.2E-15 101.9 10.0 79 52-133 1-79 (79)
109 cd05732 Ig5_NCAM-1_like Fifth 99.2 2.1E-10 4.6E-15 104.7 11.4 88 45-133 2-96 (96)
110 cd05724 Ig2_Robo Second immuno 99.2 2E-10 4.3E-15 102.4 10.9 80 51-131 2-84 (86)
111 cd04973 Ig1_FGFR First immunog 99.2 1.4E-10 3.1E-15 102.0 9.7 79 329-409 1-79 (79)
112 cd05748 Ig_Titin_like Immunogl 99.2 1.9E-10 4.2E-15 99.6 10.4 72 62-133 1-74 (74)
113 cd05864 Ig2_VEGFR-2 Second imm 99.2 1E-10 2.2E-15 100.3 8.4 69 340-410 1-69 (70)
114 cd05758 Ig5_KIRREL3-like Fifth 99.2 2.4E-10 5.2E-15 105.0 11.4 85 322-407 2-97 (98)
115 cd04976 Ig2_VEGFR Second immun 99.2 1.6E-10 3.5E-15 99.5 9.6 70 63-134 1-70 (71)
116 cd05749 Ig2_Tyro3_like Second 99.2 1.5E-10 3.3E-15 102.2 9.3 74 48-127 1-75 (81)
117 cd05744 Ig_Myotilin_C_like Imm 99.2 1.9E-10 4.2E-15 100.1 9.8 71 247-317 1-75 (75)
118 cd05855 Ig_TrkB_d5 Fifth domai 99.1 1.3E-10 2.9E-15 101.8 8.7 68 341-408 2-77 (79)
119 cd05743 Ig_Perlecan_D2_like Im 99.1 3E-10 6.6E-15 99.6 10.6 74 60-133 1-76 (78)
120 cd05854 Ig6_Contactin-2 Sixth 99.1 3.1E-10 6.7E-15 101.4 10.8 75 61-135 1-83 (85)
121 cd05746 Ig4_Peroxidasin Fourth 99.1 1.4E-10 3.1E-15 99.1 8.1 68 247-315 1-68 (69)
122 cd05876 Ig3_L1-CAM Third immun 99.1 2.1E-10 4.5E-15 98.7 8.9 70 247-317 1-70 (71)
123 cd05760 Ig2_PTK7 Second immuno 99.1 2.7E-10 5.8E-15 99.7 9.7 71 63-133 1-72 (77)
124 cd04974 Ig3_FGFR Third immunog 99.1 1.7E-10 3.6E-15 104.3 8.6 74 337-410 1-90 (90)
125 cd05856 Ig2_FGFRL1-like Second 99.1 2.4E-10 5.3E-15 100.7 9.5 78 55-132 4-81 (82)
126 cd05763 Ig_1 Subgroup of the i 99.1 2.4E-10 5.3E-15 99.3 9.3 70 340-409 1-74 (75)
127 cd05722 Ig1_Neogenin First imm 99.1 3.8E-10 8.2E-15 103.0 10.8 84 48-132 2-94 (95)
128 cd05864 Ig2_VEGFR-2 Second imm 99.1 2.4E-10 5.3E-15 98.0 8.9 69 247-318 1-69 (70)
129 cd05773 Ig8_hNephrin_like Eigh 99.1 6.9E-10 1.5E-14 104.0 12.5 93 43-135 2-106 (109)
130 cd05760 Ig2_PTK7 Second immuno 99.1 3.9E-10 8.4E-15 98.7 9.9 72 247-318 1-73 (77)
131 cd04971 Ig_TrKABC_d5 Fifth dom 99.1 3.4E-10 7.4E-15 100.1 9.5 69 341-409 2-80 (81)
132 cd05749 Ig2_Tyro3_like Second 99.1 2.5E-10 5.4E-15 100.8 8.5 77 326-407 2-80 (81)
133 cd04977 Ig1_NCAM-1_like First 99.1 6.1E-10 1.3E-14 101.0 11.2 83 326-409 4-92 (92)
134 cd05858 Ig3_FGFR-2 Third immun 99.1 3.3E-10 7.1E-15 102.3 9.4 73 337-409 1-89 (90)
135 cd05771 IgC_Tapasin_R Tapasin- 99.1 1.1E-09 2.3E-14 107.4 13.6 112 284-397 2-130 (139)
136 cd04977 Ig1_NCAM-1_like First 99.1 8.7E-10 1.9E-14 100.0 11.9 84 48-132 3-91 (92)
137 cd05856 Ig2_FGFRL1-like Second 99.1 4.2E-10 9E-15 99.2 9.4 77 240-316 5-81 (82)
138 cd05853 Ig6_Contactin-4 Sixth 99.1 5.9E-10 1.3E-14 99.2 9.7 76 61-136 1-84 (85)
139 cd05739 Ig3_RPTP_IIa_LAR_like 99.1 8.6E-10 1.9E-14 94.4 9.9 68 244-315 1-68 (69)
140 cd05763 Ig_1 Subgroup of the i 99.1 5.8E-10 1.3E-14 96.9 9.0 71 247-317 1-74 (75)
141 cd05726 Ig4_Robo Fhird immunog 99.1 7.2E-10 1.6E-14 100.1 9.8 75 244-319 1-83 (90)
142 cd05764 Ig_2 Subgroup of the i 99.1 8.1E-10 1.8E-14 95.7 9.7 73 244-317 1-74 (74)
143 cd05756 Ig1_IL1R_like First im 99.1 4.9E-10 1.1E-14 102.1 8.7 81 53-133 7-94 (94)
144 cd04970 Ig6_Contactin_like Six 99.1 8E-10 1.7E-14 98.6 10.0 76 61-136 1-84 (85)
145 cd05738 Ig2_RPTP_IIa_LAR_like 99.1 7.7E-10 1.7E-14 96.0 9.2 70 247-317 1-73 (74)
146 cd05725 Ig3_Robo Third immunog 99.1 6.3E-10 1.4E-14 95.1 8.5 69 63-133 1-69 (69)
147 cd04967 Ig1_Contactin First Ig 99.0 1.3E-09 2.9E-14 98.5 11.0 82 46-127 2-87 (91)
148 cd05765 Ig_3 Subgroup of the i 99.0 7.1E-10 1.5E-14 97.7 9.0 73 337-409 1-81 (81)
149 PLN02283 alpha-dioxygenase 99.0 4.1E-11 8.8E-16 142.6 1.3 40 666-705 82-122 (633)
150 cd07702 Ig2_VEGFR-1 Second imm 99.0 8E-10 1.7E-14 95.1 8.6 68 340-408 1-69 (72)
151 cd04971 Ig_TrKABC_d5 Fifth dom 99.0 1.4E-09 3E-14 96.2 10.4 69 64-132 2-79 (81)
152 cd05734 Ig7_DSCAM Seventh immu 99.0 6.4E-10 1.4E-14 97.7 8.0 70 340-409 1-79 (79)
153 cd05731 Ig3_L1-CAM_like Third 99.0 8.3E-10 1.8E-14 94.6 8.5 70 247-317 1-70 (71)
154 cd04974 Ig3_FGFR Third immunog 99.0 6.5E-10 1.4E-14 100.4 8.1 74 60-133 1-89 (90)
155 cd07702 Ig2_VEGFR-1 Second imm 99.0 1.3E-09 2.8E-14 93.9 9.1 70 63-133 1-70 (72)
156 cd05855 Ig_TrkB_d5 Fifth domai 99.0 1.5E-09 3.2E-14 95.2 9.6 69 64-132 2-77 (79)
157 cd04967 Ig1_Contactin First Ig 99.0 2.3E-09 4.9E-14 97.0 11.1 80 323-403 2-87 (91)
158 cd05758 Ig5_KIRREL3-like Fifth 99.0 2.7E-09 5.8E-14 98.0 11.6 86 45-131 2-97 (98)
159 cd05736 Ig2_Follistatin_like S 99.0 1.7E-09 3.8E-14 94.1 9.6 72 63-134 1-74 (76)
160 cd05858 Ig3_FGFR-2 Third immun 99.0 2.4E-09 5.1E-14 96.7 10.3 74 60-133 1-89 (90)
161 cd05736 Ig2_Follistatin_like S 99.0 2.4E-09 5.3E-14 93.2 10.0 72 247-318 1-74 (76)
162 cd05756 Ig1_IL1R_like First im 99.0 1.7E-09 3.6E-14 98.5 8.7 78 331-409 8-94 (94)
163 cd05750 Ig_Pro_neuregulin Immu 99.0 1.6E-09 3.5E-14 93.9 8.0 67 340-406 1-74 (75)
164 cd05752 Ig1_FcgammaR_like Frst 99.0 1.7E-09 3.7E-14 94.8 8.0 67 46-121 1-68 (78)
165 cd05752 Ig1_FcgammaR_like Frst 98.9 2.6E-09 5.6E-14 93.7 7.9 67 323-397 1-68 (78)
166 cd05754 Ig3_Perlecan_like Thir 98.9 4.4E-09 9.4E-14 93.8 9.4 78 327-407 6-84 (85)
167 cd05898 Ig5_KIRREL3 Fifth immu 98.9 8.4E-09 1.8E-13 94.2 11.4 85 322-407 2-97 (98)
168 cd05875 Ig6_hNeurofascin_like 98.9 4.2E-09 9.1E-14 92.2 9.0 65 340-404 1-72 (77)
169 cd05873 Ig_Sema4D_like Immunog 98.9 7.7E-09 1.7E-13 92.4 10.7 70 51-122 2-71 (87)
170 cd05873 Ig_Sema4D_like Immunog 98.9 8.2E-09 1.8E-13 92.2 10.8 69 328-398 2-71 (87)
171 cd05733 Ig6_L1-CAM_like Sixth 98.9 3.1E-09 6.7E-14 93.0 7.8 65 63-127 1-71 (77)
172 cd05874 Ig6_NrCAM Sixth immuno 98.9 4.3E-09 9.4E-14 92.1 8.7 65 340-404 1-72 (77)
173 cd05742 Ig1_VEGFR_like First i 98.9 5.2E-09 1.1E-13 93.1 9.1 73 337-409 1-83 (84)
174 cd05750 Ig_Pro_neuregulin Immu 98.9 5.1E-09 1.1E-13 90.7 8.5 68 63-130 1-74 (75)
175 cd05733 Ig6_L1-CAM_like Sixth 98.9 3.8E-09 8.2E-14 92.4 7.7 64 340-403 1-71 (77)
176 cd05874 Ig6_NrCAM Sixth immuno 98.9 6.7E-09 1.4E-13 90.9 9.1 65 63-127 1-71 (77)
177 cd05875 Ig6_hNeurofascin_like 98.9 7.8E-09 1.7E-13 90.5 9.5 66 63-128 1-72 (77)
178 cd05765 Ig_3 Subgroup of the i 98.9 7E-09 1.5E-13 91.3 8.9 74 60-133 1-81 (81)
179 cd04979 Ig_Semaphorin_C Immuno 98.9 1.1E-08 2.4E-13 92.1 10.0 83 51-134 2-87 (89)
180 cd05729 Ig2_FGFR_like Second i 98.9 1.9E-08 4.1E-13 89.1 11.2 78 332-409 4-85 (85)
181 cd05754 Ig3_Perlecan_like Thir 98.9 9.7E-09 2.1E-13 91.6 9.3 78 50-131 6-84 (85)
182 cd05734 Ig7_DSCAM Seventh immu 98.8 1.2E-08 2.7E-13 89.6 8.7 69 247-316 1-78 (79)
183 cd05729 Ig2_FGFR_like Second i 98.8 3.1E-08 6.6E-13 87.7 10.9 78 55-132 4-84 (85)
184 cd05742 Ig1_VEGFR_like First i 98.8 1.9E-08 4.1E-13 89.5 9.4 74 60-133 1-83 (84)
185 cd07701 Ig1_Necl-3 First (N-te 98.8 3E-08 6.6E-13 90.5 9.6 80 329-409 4-95 (95)
186 cd05895 Ig_Pro_neuregulin-1 Im 98.8 1.7E-08 3.7E-13 87.9 7.6 67 340-406 1-75 (76)
187 cd07701 Ig1_Necl-3 First (N-te 98.8 4.4E-08 9.6E-13 89.4 10.4 82 51-133 3-95 (95)
188 cd05753 Ig2_FcgammaR_like Seco 98.8 1.9E-08 4.2E-13 89.3 7.9 71 51-127 5-76 (83)
189 cd05898 Ig5_KIRREL3 Fifth immu 98.8 6.3E-08 1.4E-12 88.5 11.3 86 45-131 2-97 (98)
190 cd05757 Ig2_IL1R_like Second i 98.8 3E-08 6.5E-13 89.8 9.2 77 332-409 5-86 (92)
191 cd05861 Ig1_PDGFR-alphabeta Fr 98.8 4.8E-08 1E-12 87.0 10.3 74 337-410 1-83 (84)
192 cd04979 Ig_Semaphorin_C Immuno 98.8 4.9E-08 1.1E-12 87.8 9.9 80 329-410 3-87 (89)
193 cd05757 Ig2_IL1R_like Second i 98.7 4.6E-08 1E-12 88.6 9.6 78 54-133 4-86 (92)
194 cd05882 Ig1_Necl-1 First (N-te 98.7 6.7E-08 1.5E-12 88.1 10.5 79 330-409 5-95 (95)
195 cd05882 Ig1_Necl-1 First (N-te 98.7 9.9E-08 2.1E-12 87.0 11.3 80 52-132 4-94 (95)
196 cd05861 Ig1_PDGFR-alphabeta Fr 98.7 7.9E-08 1.7E-12 85.6 10.4 74 60-133 1-82 (84)
197 cd05895 Ig_Pro_neuregulin-1 Im 98.7 4.1E-08 8.8E-13 85.5 8.1 68 63-130 1-75 (76)
198 smart00408 IGc2 Immunoglobulin 98.7 6.7E-08 1.5E-12 79.3 8.5 63 59-123 1-63 (63)
199 smart00408 IGc2 Immunoglobulin 98.7 7.4E-08 1.6E-12 79.0 8.4 63 336-399 1-63 (63)
200 cd05727 Ig2_Contactin-2-like S 98.7 4.7E-08 1E-12 88.7 7.6 73 53-125 11-86 (96)
201 PF13895 Ig_2: Immunoglobulin 98.7 1.7E-07 3.6E-12 81.6 10.8 78 323-409 2-80 (80)
202 TIGR00864 PCC polycystin catio 98.7 0.00035 7.7E-09 93.3 45.3 361 16-413 1665-2042(2740)
203 PF13895 Ig_2: Immunoglobulin 98.7 1.4E-07 3.1E-12 82.1 10.1 69 46-124 2-70 (80)
204 smart00409 IG Immunoglobulin. 98.6 4.9E-07 1.1E-11 78.7 12.6 82 52-133 1-85 (86)
205 smart00410 IG_like Immunoglobu 98.6 4.9E-07 1.1E-11 78.7 12.6 82 52-133 1-85 (86)
206 TIGR00864 PCC polycystin catio 98.6 0.00015 3.4E-09 96.5 40.4 358 18-412 1565-1951(2740)
207 cd05753 Ig2_FcgammaR_like Seco 98.6 1.1E-07 2.3E-12 84.6 8.1 67 331-402 8-75 (83)
208 cd05845 Ig2_L1-CAM_like Second 98.6 8E-08 1.7E-12 87.1 7.2 71 330-400 11-84 (95)
209 smart00410 IG_like Immunoglobu 98.6 5.8E-07 1.3E-11 78.2 12.0 79 331-409 3-85 (86)
210 smart00409 IG Immunoglobulin. 98.6 5.8E-07 1.3E-11 78.2 12.0 79 331-409 3-85 (86)
211 cd05727 Ig2_Contactin-2-like S 98.6 1E-07 2.2E-12 86.6 7.2 71 331-401 12-86 (96)
212 cd05871 Ig_Semaphorin_classIII 98.6 3.6E-07 7.7E-12 82.7 10.7 78 332-411 6-90 (91)
213 cd05862 Ig1_VEGFR First immuno 98.6 2.2E-07 4.8E-12 83.1 9.2 75 337-411 1-86 (86)
214 cd07690 Ig1_CD4 First immunogl 98.6 2.2E-07 4.7E-12 84.5 8.0 71 55-125 2-91 (94)
215 cd05871 Ig_Semaphorin_classIII 98.5 5.4E-07 1.2E-11 81.5 10.1 80 54-134 5-89 (91)
216 cd05717 Ig1_Necl-1-3_like Firs 98.5 5E-07 1.1E-11 82.3 9.8 79 330-409 5-95 (95)
217 cd05845 Ig2_L1-CAM_like Second 98.5 2.4E-07 5.1E-12 84.0 7.1 72 52-124 10-84 (95)
218 PF00047 ig: Immunoglobulin do 98.5 1.9E-07 4.1E-12 78.2 5.9 59 60-118 1-64 (64)
219 cd05717 Ig1_Necl-1-3_like Firs 98.5 8.5E-07 1.8E-11 80.8 10.4 81 52-133 4-95 (95)
220 cd05896 Ig1_IL1RAPL-1_like Fir 98.4 1E-06 2.2E-11 80.5 9.0 80 54-133 9-104 (104)
221 cd05860 Ig4_SCFR Fourth immuno 98.4 1.5E-06 3.3E-11 79.1 9.9 80 331-410 12-100 (101)
222 cd05862 Ig1_VEGFR First immuno 98.4 1.1E-06 2.4E-11 78.6 8.8 75 60-134 1-85 (86)
223 PF13927 Ig_3: Immunoglobulin 98.4 6.3E-07 1.4E-11 76.8 6.7 74 322-396 1-75 (75)
224 cd05897 Ig2_IL1R2_like Second 98.4 1.4E-06 3.1E-11 79.1 8.4 74 54-127 4-83 (95)
225 cd05897 Ig2_IL1R2_like Second 98.4 1.5E-06 3.1E-11 79.1 8.2 71 332-402 5-82 (95)
226 PF00047 ig: Immunoglobulin do 98.4 8.8E-07 1.9E-11 74.1 6.3 59 244-302 1-64 (64)
227 cd05860 Ig4_SCFR Fourth immuno 98.3 4.6E-06 1E-10 76.0 11.2 82 237-318 11-100 (101)
228 cd07690 Ig1_CD4 First immunogl 98.3 1.5E-06 3.2E-11 79.1 7.8 70 332-401 2-91 (94)
229 cd05885 Ig2_Necl-4 Second immu 98.3 3E-06 6.4E-11 74.3 8.7 65 62-126 1-70 (80)
230 cd05774 Ig_CEACAM_D1 First imm 98.3 3.8E-06 8.2E-11 78.0 9.8 81 329-409 5-105 (105)
231 cd05885 Ig2_Necl-4 Second immu 98.3 3.5E-06 7.6E-11 73.9 8.9 62 340-401 2-69 (80)
232 PF13927 Ig_3: Immunoglobulin 98.3 1.4E-06 3.1E-11 74.5 6.0 74 45-120 1-75 (75)
233 cd05872 Ig_Sema4B_like Immunog 98.3 4.6E-06 9.9E-11 74.2 9.1 77 53-133 4-80 (85)
234 PHA03376 BARF1; Provisional 98.2 1.1E-05 2.4E-10 80.1 12.0 122 54-177 20-163 (221)
235 cd05751 Ig1_LILRB1_like First 98.2 2.8E-06 6.1E-11 76.8 7.2 74 322-397 2-75 (91)
236 cd05751 Ig1_LILRB1_like First 98.2 3E-06 6.6E-11 76.6 7.1 74 45-121 2-75 (91)
237 cd05759 Ig2_KIRREL3-like Secon 98.2 8.6E-06 1.9E-10 72.0 9.3 72 62-133 1-80 (82)
238 cd05872 Ig_Sema4B_like Immunog 98.2 9.4E-06 2E-10 72.1 9.0 78 237-318 4-81 (85)
239 cd05881 Ig1_Necl-2 First (N-te 98.2 1.7E-05 3.8E-10 72.1 11.0 68 53-120 5-83 (95)
240 cd05759 Ig2_KIRREL3-like Secon 98.2 1.1E-05 2.4E-10 71.2 9.5 71 247-317 2-80 (82)
241 cd05896 Ig1_IL1RAPL-1_like Fir 98.1 1.3E-05 2.8E-10 73.4 9.0 79 238-316 9-103 (104)
242 cd04983 IgV_TCR_alpha_like Imm 98.1 1.8E-05 3.9E-10 73.8 10.0 73 50-122 3-93 (109)
243 PHA03376 BARF1; Provisional 98.1 3.6E-05 7.8E-10 76.5 12.3 122 238-361 20-163 (221)
244 cd05881 Ig1_Necl-2 First (N-te 98.1 3.2E-05 6.9E-10 70.4 10.7 67 330-396 5-83 (95)
245 cd05879 Ig_P0 Immunoglobulin ( 98.0 4.7E-05 1E-09 72.1 11.2 82 51-132 4-113 (116)
246 cd05774 Ig_CEACAM_D1 First imm 98.0 2.5E-05 5.4E-10 72.5 9.1 81 143-223 3-103 (105)
247 cd05714 Ig_CSPGs_LP Immunoglob 98.0 3.6E-05 7.8E-10 71.6 9.8 76 336-411 1-104 (106)
248 cd05877 Ig_LP_like Immunoglobu 98.0 3E-05 6.6E-10 72.0 9.2 76 336-411 1-104 (106)
249 cd05741 Ig_CEACAM_D1_like Firs 98.0 2.9E-05 6.3E-10 69.9 8.3 72 337-408 1-91 (92)
250 cd05714 Ig_CSPGs_LP Immunoglob 98.0 6.4E-05 1.4E-09 69.9 10.7 77 59-135 1-104 (106)
251 cd05899 IgV_TCR_beta Immunoglo 98.0 3.4E-05 7.4E-10 72.3 8.8 73 49-122 2-95 (110)
252 cd05877 Ig_LP_like Immunoglobu 97.9 7.2E-05 1.6E-09 69.5 10.6 77 59-135 1-104 (106)
253 cd05741 Ig_CEACAM_D1_like Firs 97.9 3.4E-05 7.4E-10 69.5 8.0 66 60-126 1-84 (92)
254 cd04983 IgV_TCR_alpha_like Imm 97.9 4.5E-05 9.8E-10 71.1 8.6 72 328-399 4-94 (109)
255 cd05900 Ig_Aggrecan Immunoglob 97.9 7.3E-05 1.6E-09 70.3 9.7 77 59-135 1-110 (112)
256 cd04980 IgV_L_kappa Immunoglob 97.9 6.5E-05 1.4E-09 69.8 9.3 74 48-121 3-93 (106)
257 cd05900 Ig_Aggrecan Immunoglob 97.9 7.3E-05 1.6E-09 70.3 9.4 76 336-411 1-110 (112)
258 cd05713 Ig_MOG_like Immunoglob 97.8 9.7E-05 2.1E-09 67.8 9.8 73 337-409 1-99 (100)
259 PHA03269 envelope glycoprotein 97.8 0.0011 2.5E-08 74.4 18.7 197 5-212 286-512 (566)
260 cd05713 Ig_MOG_like Immunoglob 97.8 0.00012 2.6E-09 67.1 9.7 74 60-133 1-99 (100)
261 cd05879 Ig_P0 Immunoglobulin ( 97.8 0.00013 2.8E-09 69.1 9.9 73 329-401 5-106 (116)
262 cd05775 Ig_SLAM-CD84_like_N N- 97.8 6.6E-05 1.4E-09 68.8 7.5 76 58-133 2-96 (97)
263 PHA03270 envelope glycoprotein 97.8 0.0017 3.7E-08 72.3 19.3 193 8-211 182-400 (466)
264 cd05718 Ig1_PVR_like First imm 97.8 0.00015 3.2E-09 66.2 9.5 73 61-133 1-97 (98)
265 cd05880 Ig_EVA1 Immunoglobulin 97.8 0.00017 3.7E-09 68.2 10.1 74 51-124 4-104 (115)
266 cd00099 IgV Immunoglobulin var 97.8 8.2E-05 1.8E-09 68.7 7.8 68 56-123 2-91 (105)
267 cd05715 Ig_P0-like Immunoglobu 97.8 0.00018 4E-09 68.0 10.4 74 51-124 4-105 (116)
268 cd05899 IgV_TCR_beta Immunoglo 97.8 0.0001 2.2E-09 69.0 8.4 72 327-399 3-96 (110)
269 cd05878 Ig_Aggrecan_like Immun 97.7 0.00027 5.8E-09 66.4 11.0 77 59-135 1-108 (110)
270 cd05755 Ig2_ICAM-1_like Second 97.7 0.00014 3E-09 66.7 8.6 78 47-124 3-87 (100)
271 cd05718 Ig1_PVR_like First imm 97.7 0.00016 3.4E-09 66.0 8.8 72 338-409 1-97 (98)
272 cd04982 IgV_TCR_gamma Immunogl 97.7 0.00014 3.1E-09 68.7 8.3 71 50-120 3-98 (116)
273 cd05878 Ig_Aggrecan_like Immun 97.7 0.00029 6.2E-09 66.2 10.2 76 336-411 1-108 (110)
274 cd00099 IgV Immunoglobulin var 97.7 0.00012 2.7E-09 67.4 7.5 67 333-399 2-91 (105)
275 PHA03273 envelope glycoprotein 97.7 0.003 6.5E-08 71.1 19.2 194 7-212 197-421 (486)
276 cd05711 Ig_FcalphaRI Immunoglo 97.6 0.00018 3.8E-09 65.5 7.7 73 46-120 2-76 (94)
277 PF07686 V-set: Immunoglobulin 97.6 0.00038 8.2E-09 64.6 10.2 71 51-121 7-101 (114)
278 cd05775 Ig_SLAM-CD84_like_N N- 97.6 0.00018 3.9E-09 65.9 7.7 75 335-409 2-96 (97)
279 cd05883 Ig2_Necl-2 Second immu 97.6 0.00029 6.4E-09 62.1 8.6 61 63-123 2-68 (82)
280 cd04980 IgV_L_kappa Immunoglob 97.6 0.00022 4.8E-09 66.2 8.3 72 326-397 4-93 (106)
281 cd05883 Ig2_Necl-2 Second immu 97.6 0.00039 8.5E-09 61.3 8.9 61 247-307 2-68 (82)
282 cd05755 Ig2_ICAM-1_like Second 97.6 0.00037 8E-09 63.9 8.9 74 326-400 5-87 (100)
283 PHA03270 envelope glycoprotein 97.5 0.0068 1.5E-07 67.7 19.7 194 101-304 184-401 (466)
284 cd05761 Ig2_Necl-1-4_like Seco 97.5 0.00032 7E-09 62.0 7.7 63 63-125 2-71 (82)
285 cd04984 IgV_L_lambda Immunoglo 97.5 0.00036 7.9E-09 63.8 8.3 66 56-121 2-85 (98)
286 cd05888 Ig1_Nectin-4_like Frst 97.5 0.00057 1.2E-08 62.9 9.5 71 339-409 2-99 (100)
287 cd00098 IgC Immunoglobulin Con 97.5 0.00033 7.1E-09 63.4 7.8 67 58-124 11-87 (95)
288 cd07705 Ig2_Necl-1 Second immu 97.5 0.00065 1.4E-08 60.3 9.3 63 63-125 2-72 (83)
289 cd05761 Ig2_Necl-1-4_like Seco 97.5 0.0005 1.1E-08 60.8 8.5 63 247-309 2-71 (82)
290 PHA03273 envelope glycoprotein 97.5 0.0059 1.3E-07 68.8 18.6 194 101-304 200-421 (486)
291 PF07686 V-set: Immunoglobulin 97.5 0.00085 1.8E-08 62.2 10.2 81 329-409 8-114 (114)
292 cd05711 Ig_FcalphaRI Immunoglo 97.5 0.00044 9.6E-09 62.9 7.9 71 323-395 2-75 (94)
293 cd07694 Ig2_CD4 Second immunog 97.5 0.00071 1.5E-08 59.8 8.8 75 55-133 9-85 (88)
294 cd05887 Ig1_Nectin-3_like Firs 97.5 0.00077 1.7E-08 61.5 9.4 72 338-409 1-95 (96)
295 cd05888 Ig1_Nectin-4_like Frst 97.4 0.00072 1.6E-08 62.3 9.2 72 62-133 2-99 (100)
296 PHA02987 Ig domain OX-2-like p 97.4 0.00089 1.9E-08 67.3 10.4 85 53-137 23-125 (189)
297 cd05886 Ig1_Nectin-1_like Firs 97.4 0.00096 2.1E-08 61.3 10.0 71 339-409 2-98 (99)
298 cd04982 IgV_TCR_gamma Immunogl 97.4 0.0004 8.8E-09 65.6 7.8 68 329-396 5-98 (116)
299 cd05902 Ig_Neurocan Immunoglob 97.4 0.00094 2E-08 62.6 10.0 76 60-135 2-108 (110)
300 cd05846 Ig1_MRC-OX-2_like Firs 97.4 0.00076 1.7E-08 61.6 9.3 74 60-133 1-96 (97)
301 cd00098 IgC Immunoglobulin Con 97.4 0.0005 1.1E-08 62.2 7.9 67 242-308 11-87 (95)
302 PHA03269 envelope glycoprotein 97.4 0.011 2.4E-07 66.7 19.6 192 192-395 290-511 (566)
303 cd05880 Ig_EVA1 Immunoglobulin 97.4 0.0011 2.5E-08 62.6 10.4 74 235-308 4-104 (115)
304 PHA03271 envelope glycoprotein 97.4 0.0063 1.4E-07 67.4 17.2 199 3-212 202-430 (490)
305 KOG1480|consensus 97.4 9.6E-05 2.1E-09 86.8 3.4 179 138-317 24-218 (909)
306 cd05715 Ig_P0-like Immunoglobu 97.4 0.0014 3E-08 62.0 10.7 74 235-308 4-105 (116)
307 cd05901 Ig_Versican Immunoglob 97.4 0.0018 3.8E-08 61.1 11.1 38 98-135 78-115 (117)
308 cd07706 IgV_TCR_delta Immunogl 97.4 0.00069 1.5E-08 64.0 8.6 73 49-121 3-94 (116)
309 cd05886 Ig1_Nectin-1_like Firs 97.4 0.0014 3.1E-08 60.2 10.3 72 62-133 2-98 (99)
310 cd05902 Ig_Neurocan Immunoglob 97.4 0.00092 2E-08 62.6 8.9 76 336-411 1-108 (110)
311 cd05901 Ig_Versican Immunoglob 97.4 0.0015 3.4E-08 61.5 10.4 75 337-411 2-115 (117)
312 cd07694 Ig2_CD4 Second immunog 97.3 0.0014 3.1E-08 57.9 8.8 77 147-226 8-86 (88)
313 cd07705 Ig2_Necl-1 Second immu 97.3 0.002 4.4E-08 57.1 10.0 63 247-309 2-72 (83)
314 cd05884 Ig2_Necl-3 Second immu 97.2 0.0013 2.8E-08 58.4 8.1 62 63-124 2-71 (83)
315 cd05887 Ig1_Nectin-3_like Firs 97.2 0.002 4.3E-08 58.8 9.4 73 61-133 1-95 (96)
316 KOG1480|consensus 97.2 0.00015 3.2E-09 85.3 2.3 172 45-217 24-209 (909)
317 cd05716 Ig_pIgR Immunoglobulin 97.2 0.0014 3E-08 59.9 8.4 68 55-122 2-87 (98)
318 cd04984 IgV_L_lambda Immunoglo 97.2 0.0011 2.3E-08 60.7 7.6 65 333-397 2-85 (98)
319 PHA02987 Ig domain OX-2-like p 97.2 0.002 4.4E-08 64.8 10.0 82 332-413 25-125 (189)
320 cd05884 Ig2_Necl-3 Second immu 97.2 0.0016 3.4E-08 57.9 8.1 63 247-309 2-72 (83)
321 cd05712 Ig_Siglec_N Immunoglob 97.2 0.0027 5.9E-08 60.4 10.3 71 51-121 5-102 (119)
322 cd05846 Ig1_MRC-OX-2_like Firs 97.2 0.0022 4.7E-08 58.6 9.1 73 337-409 1-96 (97)
323 cd07700 IgV_CD8_beta Immunoglo 97.2 0.0014 3.1E-08 61.0 8.0 65 56-120 2-93 (107)
324 cd00096 Ig Immunoglobulin doma 97.1 0.0019 4.1E-08 52.8 7.8 60 63-122 1-66 (74)
325 cd00096 Ig Immunoglobulin doma 97.1 0.0019 4.2E-08 52.7 7.7 59 340-398 1-66 (74)
326 cd07706 IgV_TCR_delta Immunogl 97.1 0.0025 5.5E-08 60.2 9.2 70 327-396 4-93 (116)
327 cd07698 IgC_MHC_I_alpha3 Class 97.0 0.0042 9.1E-08 56.3 9.7 65 60-124 14-85 (93)
328 cd05772 IgC_SIRP Signal-regula 97.0 0.0059 1.3E-07 57.4 10.5 71 54-125 15-95 (111)
329 PHA02914 Immunoglobulin-like d 97.0 0.6 1.3E-05 52.0 26.7 254 5-271 78-422 (500)
330 cd07699 IgC_L Immunoglobulin C 97.0 0.0023 5E-08 58.9 7.1 73 52-124 9-91 (100)
331 cd05716 Ig_pIgR Immunoglobulin 96.9 0.0031 6.7E-08 57.6 7.9 67 332-398 2-87 (98)
332 PF08205 C2-set_2: CD80-like C 96.9 0.0044 9.6E-08 55.4 8.5 66 60-125 14-87 (89)
333 cd05772 IgC_SIRP Signal-regula 96.9 0.0097 2.1E-07 55.9 10.6 72 237-309 14-95 (111)
334 cd05720 Ig_CD8_alpha Immunoglo 96.8 0.0029 6.3E-08 58.6 6.6 65 56-120 2-90 (104)
335 cd05847 IgC_CH2_IgE CH2 domain 96.8 0.0066 1.4E-07 55.2 8.5 73 52-124 6-88 (94)
336 cd05766 IgC_MHC_II_beta Class 96.7 0.012 2.6E-07 53.5 10.0 67 58-124 12-85 (94)
337 cd05768 IgC_CH4 CH4 domain (fo 96.7 0.0056 1.2E-07 56.6 7.9 72 53-124 9-93 (102)
338 PF08205 C2-set_2: CD80-like C 96.7 0.0072 1.6E-07 54.0 8.4 64 337-400 14-86 (89)
339 cd05889 Ig1_DNAM-1_like First 96.7 0.012 2.7E-07 53.6 9.9 70 338-407 1-93 (96)
340 cd04981 IgV_H Immunoglobulin ( 96.7 0.0061 1.3E-07 57.8 8.2 71 50-120 2-97 (117)
341 cd05767 IgC_MHC_II_alpha Class 96.7 0.013 2.8E-07 53.3 9.8 63 58-123 13-85 (94)
342 PHA03271 envelope glycoprotein 96.7 0.1 2.2E-06 58.2 18.3 195 100-304 208-430 (490)
343 cd07698 IgC_MHC_I_alpha3 Class 96.7 0.019 4.2E-07 52.0 10.9 65 244-308 14-85 (93)
344 smart00407 IGc1 Immunoglobulin 96.7 0.011 2.4E-07 51.2 8.8 62 62-123 1-72 (75)
345 cd05889 Ig1_DNAM-1_like First 96.6 0.013 2.7E-07 53.6 9.3 69 61-129 1-91 (96)
346 cd07699 IgC_L Immunoglobulin C 96.6 0.0079 1.7E-07 55.4 7.8 70 240-309 13-92 (100)
347 cd05770 IgC_beta2m Class I maj 96.6 0.015 3.3E-07 52.7 9.4 65 58-123 13-84 (93)
348 cd07700 IgV_CD8_beta Immunoglo 96.5 0.0087 1.9E-07 55.7 7.3 64 333-396 2-93 (107)
349 KOG0613|consensus 96.5 0.012 2.7E-07 73.8 10.5 208 100-307 279-517 (1205)
350 cd07696 IgC_CH3 CH3 domain (th 96.4 0.011 2.3E-07 54.1 7.5 74 51-124 5-88 (96)
351 cd05720 Ig_CD8_alpha Immunoglo 96.4 0.009 2E-07 55.4 6.9 64 333-396 2-90 (104)
352 cd05767 IgC_MHC_II_alpha Class 96.4 0.041 8.9E-07 50.0 10.9 62 243-307 14-85 (94)
353 cd05769 IgC_TCR_beta T cell re 96.3 0.017 3.7E-07 54.5 8.5 77 51-127 9-97 (115)
354 cd05768 IgC_CH4 CH4 domain (fo 96.3 0.012 2.7E-07 54.3 7.2 69 240-308 12-93 (102)
355 cd05766 IgC_MHC_II_beta Class 96.3 0.049 1.1E-06 49.5 10.9 68 242-309 12-86 (94)
356 KOG0613|consensus 96.3 0.046 1E-06 68.9 13.9 176 234-414 234-432 (1205)
357 cd05847 IgC_CH2_IgE CH2 domain 96.2 0.022 4.8E-07 51.8 8.4 67 336-402 13-90 (94)
358 cd04981 IgV_H Immunoglobulin ( 96.2 0.016 3.4E-07 55.0 7.6 69 144-212 3-97 (117)
359 cd05712 Ig_Siglec_N Immunoglob 96.2 0.024 5.1E-07 53.9 8.7 71 235-305 5-102 (119)
360 cd05770 IgC_beta2m Class I maj 96.2 0.062 1.3E-06 48.8 10.8 64 242-307 13-84 (93)
361 smart00407 IGc1 Immunoglobulin 96.1 0.025 5.3E-07 49.0 7.8 59 339-397 1-70 (75)
362 smart00406 IGv Immunoglobulin 96.1 0.017 3.6E-07 50.0 6.6 57 62-118 1-81 (81)
363 PF07654 C1-set: Immunoglobuli 96.0 0.051 1.1E-06 48.0 9.5 63 59-124 7-79 (83)
364 cd07697 IgC_TCR_gamma T cell r 95.9 0.048 1E-06 49.8 8.9 68 52-122 8-85 (96)
365 cd05769 IgC_TCR_beta T cell re 95.8 0.04 8.8E-07 52.0 8.2 76 236-311 10-97 (115)
366 cd05719 Ig2_PVR_like Second im 95.6 0.063 1.4E-06 48.9 8.5 65 336-400 14-84 (95)
367 cd07696 IgC_CH3 CH3 domain (th 95.6 0.045 9.8E-07 50.0 7.6 71 144-214 5-86 (96)
368 PF07654 C1-set: Immunoglobuli 95.6 0.12 2.6E-06 45.6 9.9 64 243-309 7-80 (83)
369 cd07692 Ig_CD3_epsilon Immunog 95.5 0.018 3.9E-07 48.0 4.1 52 58-121 5-56 (65)
370 cd05719 Ig2_PVR_like Second im 95.5 0.085 1.8E-06 48.1 9.0 73 59-132 14-92 (95)
371 cd04985 IgC_CH1 CH1 domain (fi 95.4 0.12 2.5E-06 47.2 9.4 63 59-122 15-87 (95)
372 cd07692 Ig_CD3_epsilon Immunog 95.4 0.046 1E-06 45.7 6.0 52 335-397 5-56 (65)
373 smart00406 IGv Immunoglobulin 95.4 0.038 8.1E-07 47.8 6.0 56 339-394 1-81 (81)
374 cd07697 IgC_TCR_gamma T cell r 95.3 0.093 2E-06 47.9 8.5 70 236-306 8-85 (96)
375 PHA02633 hypothetical protein; 95.3 0.043 9.4E-07 45.0 5.4 40 6-45 16-55 (63)
376 cd07703 Ig2_Nectin-2_like Seco 95.2 0.088 1.9E-06 48.0 8.1 70 61-131 16-91 (95)
377 cd04986 IgC_CH2 CH2 domain (se 95.1 0.04 8.6E-07 50.5 5.5 73 51-124 10-91 (99)
378 cd07691 Ig_CD3_gamma_delta Imm 94.9 0.046 1E-06 46.0 4.9 49 337-396 6-54 (69)
379 cd07704 Ig2_Nectin-3-4_like Se 94.9 0.11 2.4E-06 47.5 7.7 70 54-124 10-86 (97)
380 cd04985 IgC_CH1 CH1 domain (fi 94.9 0.16 3.5E-06 46.2 8.9 63 243-306 15-87 (95)
381 cd07704 Ig2_Nectin-3-4_like Se 94.8 0.16 3.4E-06 46.5 8.3 74 236-310 8-88 (97)
382 cd05721 IgV_CTLA-4 Immunoglobu 94.7 0.14 3E-06 48.0 7.9 70 50-119 3-94 (115)
383 PF08204 V-set_CD47: CD47 immu 94.2 0.12 2.6E-06 49.5 6.5 77 334-411 24-121 (130)
384 cd07703 Ig2_Nectin-2_like Seco 93.9 0.3 6.4E-06 44.5 8.2 68 154-221 16-89 (95)
385 PHA02633 hypothetical protein; 93.8 0.12 2.7E-06 42.4 4.9 39 97-135 16-54 (63)
386 cd07691 Ig_CD3_gamma_delta Imm 93.8 0.12 2.6E-06 43.5 4.9 49 244-304 6-54 (69)
387 cd04986 IgC_CH2 CH2 domain (se 93.7 0.14 3.1E-06 46.9 5.8 73 235-308 10-91 (99)
388 PF08204 V-set_CD47: CD47 immu 93.6 0.2 4.4E-06 48.0 6.8 75 58-133 25-119 (130)
389 PHA02914 Immunoglobulin-like d 93.5 16 0.00035 41.2 32.7 118 239-364 274-422 (500)
390 cd07689 Ig2_VCAM-1 Second immu 93.5 0.23 4.9E-06 45.3 6.5 64 57-121 12-85 (99)
391 KOG4597|consensus 92.7 0.15 3.3E-06 57.7 5.2 89 323-411 197-293 (560)
392 cd05721 IgV_CTLA-4 Immunoglobu 92.5 0.71 1.5E-05 43.4 8.5 66 329-394 5-93 (115)
393 PRK14081 triple tyrosine motif 91.8 39 0.00084 41.4 36.4 278 57-355 302-610 (667)
394 PF07354 Sp38: Zona-pellucida- 91.7 0.2 4.4E-06 53.1 4.5 47 350-396 11-58 (271)
395 cd07689 Ig2_VCAM-1 Second immu 91.7 0.51 1.1E-05 43.1 6.3 64 149-213 11-85 (99)
396 PHA02982 hypothetical protein; 91.1 1 2.2E-05 46.1 8.4 117 53-177 32-172 (251)
397 PHA02982 hypothetical protein; 90.6 2.1 4.5E-05 44.0 10.0 117 146-269 32-173 (251)
398 PHA03283 envelope glycoprotein 90.2 8.8 0.00019 44.8 15.9 76 6-81 132-233 (542)
399 KOG1026|consensus 90.1 0.38 8.2E-06 58.8 5.2 163 238-413 201-366 (774)
400 KOG4597|consensus 89.6 0.48 1E-05 53.9 5.1 86 142-227 200-293 (560)
401 PHA03042 CD47-like protein; Pr 89.2 1.4 3E-05 47.1 7.9 70 59-133 30-104 (286)
402 PF07354 Sp38: Zona-pellucida- 89.2 0.52 1.1E-05 50.1 4.8 48 166-213 11-59 (271)
403 PF02124 Marek_A: Marek's dise 88.7 11 0.00025 39.2 14.0 128 260-395 8-158 (211)
404 PF06328 Lep_receptor_Ig: Ig-l 88.0 1.6 3.4E-05 39.3 6.5 68 51-118 9-81 (89)
405 PHA03042 CD47-like protein; Pr 87.7 2.1 4.5E-05 45.8 8.0 71 336-410 30-105 (286)
406 PHA03282 envelope glycoprotein 86.2 14 0.00031 42.4 13.9 37 7-43 123-161 (540)
407 PF11465 Receptor_2B4: Natural 84.6 5.5 0.00012 36.8 8.1 43 91-133 63-106 (108)
408 PRK14081 triple tyrosine motif 84.6 1.1E+02 0.0024 37.7 40.8 329 57-412 203-574 (667)
409 KOG1026|consensus 84.1 1.7 3.7E-05 53.3 6.1 157 54-226 201-363 (774)
410 PF02124 Marek_A: Marek's dise 82.4 30 0.00066 36.1 13.5 129 76-212 8-159 (211)
411 PF02480 Herpes_gE: Alphaherpe 82.3 5.1 0.00011 46.9 8.9 75 7-81 88-189 (439)
412 PHA03286 envelope glycoprotein 81.8 40 0.00086 38.9 15.1 76 6-81 125-225 (492)
413 PF06328 Lep_receptor_Ig: Ig-l 79.9 5.6 0.00012 35.8 6.4 69 234-302 8-81 (89)
414 PHA03283 envelope glycoprotein 79.8 10 0.00022 44.3 9.8 87 375-462 134-235 (542)
415 PHA02865 MHC-like TNF binding 79.7 5 0.00011 44.8 7.2 21 62-82 216-238 (338)
416 PHA02865 MHC-like TNF binding 78.8 6.8 0.00015 43.8 7.9 21 246-266 216-238 (338)
417 PF05790 C2-set: Immunoglobuli 77.6 21 0.00045 31.4 9.1 38 74-119 26-63 (80)
418 PF11465 Receptor_2B4: Natural 76.6 21 0.00046 33.0 9.0 56 348-403 38-99 (108)
419 PF02010 REJ: REJ domain; Int 74.2 4.7 0.0001 47.3 5.6 290 62-358 2-340 (440)
420 PHA03281 envelope glycoprotein 73.6 92 0.002 36.8 15.1 75 7-81 297-394 (642)
421 PF03921 ICAM_N: Intercellular 65.1 64 0.0014 29.2 9.4 80 141-227 6-87 (91)
422 PF05790 C2-set: Immunoglobuli 64.9 50 0.0011 29.1 8.6 51 352-409 27-78 (80)
423 PF02010 REJ: REJ domain; Int 64.5 6.6 0.00014 46.0 4.1 256 155-413 2-301 (440)
424 PHA03052 Hypothetical protein; 63.5 28 0.0006 29.5 6.2 36 52-87 4-42 (69)
425 KOG0200|consensus 63.2 78 0.0017 39.0 13.1 106 99-212 13-138 (609)
426 KOG0200|consensus 55.9 1.1E+02 0.0024 37.6 12.7 109 5-120 10-138 (609)
427 PF03921 ICAM_N: Intercellular 54.4 1.7E+02 0.0037 26.5 11.2 80 326-413 7-89 (91)
428 PF06832 BiPBP_C: Penicillin-B 54.1 1.1E+02 0.0023 27.2 9.1 56 62-127 31-86 (89)
429 PHA03282 envelope glycoprotein 53.5 60 0.0013 37.6 8.8 39 373-411 122-162 (540)
430 PHA03189 UL14 tegument protein 51.9 78 0.0017 34.7 8.9 82 51-133 58-167 (348)
431 PHA03052 Hypothetical protein; 47.2 44 0.00095 28.3 4.8 35 329-363 4-41 (69)
432 PF02480 Herpes_gE: Alphaherpe 45.6 11 0.00024 44.1 1.7 88 374-462 88-191 (439)
433 PF06832 BiPBP_C: Penicillin-B 43.2 1.8E+02 0.004 25.7 8.9 56 339-403 31-86 (89)
434 PHA03240 envelope glycoprotein 42.8 36 0.00079 35.2 4.5 71 54-124 32-130 (258)
435 PHA03281 envelope glycoprotein 42.6 98 0.0021 36.6 8.4 88 374-462 297-396 (642)
436 cd05890 Ig2_Nectin-1_like Seco 42.4 90 0.002 28.5 6.4 69 339-407 22-96 (98)
437 cd05890 Ig2_Nectin-1_like Seco 41.2 1.2E+02 0.0025 27.8 6.9 61 156-216 23-89 (98)
438 PHA03286 envelope glycoprotein 41.1 1.5E+02 0.0032 34.5 9.4 87 375-462 127-227 (492)
439 PHA03189 UL14 tegument protein 41.0 1.5E+02 0.0033 32.5 9.1 74 236-309 59-159 (348)
440 KOG4289|consensus 39.9 1.1E+03 0.024 31.9 39.7 439 14-474 331-833 (2531)
441 PF00801 PKD: PKD domain; Int 38.9 1.6E+02 0.0036 24.4 7.5 60 332-402 6-68 (69)
442 smart00089 PKD Repeats in poly 36.4 2.7E+02 0.0058 23.6 9.0 64 335-409 12-78 (79)
443 PF02440 Adeno_E3_CR1: Adenovi 26.8 1.3E+02 0.0028 25.3 4.5 52 57-112 2-63 (63)
444 PF13119 DUF3973: Domain of un 26.7 23 0.0005 26.4 0.2 15 696-724 18-32 (41)
445 smart00089 PKD Repeats in poly 23.3 4.5E+02 0.0098 22.1 7.9 63 58-132 12-77 (79)
446 PF00801 PKD: PKD domain; Int 23.0 1.5E+02 0.0033 24.6 4.6 29 55-83 6-34 (69)
447 PRK13610 photosystem II reacti 22.5 28 0.00061 32.3 -0.1 42 795-848 11-56 (113)
448 PHA03112 IL-18 binding protein 21.8 2.7E+02 0.0059 27.3 6.4 26 58-83 36-63 (141)
449 PRK13612 photosystem II reacti 20.3 35 0.00077 31.8 0.1 41 795-847 7-51 (113)
No 1
>KOG3513|consensus
Probab=100.00 E-value=3.6e-49 Score=469.50 Aligned_cols=444 Identities=27% Similarity=0.449 Sum_probs=365.5
Q ss_pred ccEEEECCCC-CCCCeEEEEEEEcCCceEE-EEEEEEEeCCCeEE-eCCCcEEEecCCeEEEEEEee-ccCCCeEEEEEC
Q psy11143 7 STELVISGVQ-REHGGRYSCVAGNPAGVYR-GDLHVTVNAPPIFI-QRPVSTTYSTGSTSRITCLVE-GHPLPQMTWFHD 82 (940)
Q Consensus 7 ~~tL~I~~v~-~sDsG~Y~C~a~n~~g~~~-~~v~l~V~~pP~~~-~~p~~~~V~eGesv~L~C~v~-g~P~p~V~W~kd 82 (940)
.++|.|.+.. ..|+|.|+|.|+|..|.+. .++.|....-+.|. .....+.+.+|+.+.|.|... +.|.+.|.|..+
T Consensus 95 ~G~lvI~~p~~~~d~G~YqC~AsN~~Gta~S~~~~l~~~~i~~F~~e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~ 174 (1051)
T KOG3513|consen 95 GGTLVITNPDAALDQGIYQCFASNKLGTAVSREARLQFGFIPKFKKEERSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLN 174 (1051)
T ss_pred cCceEecCCcchhhcceeEEEeecccceeeccceeecccccccCccccCCcEEEEeCCceEEeCCCCCCCCCccEEehhc
Confidence 6789999998 7899999999999999765 45777766555565 556778999999999999974 578889999877
Q ss_pred CEee-cCCC--CeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEE---EEEEEEe-----cccCCeeEecC-Cceee
Q psy11143 83 GNSL-DSDD--HVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES---VAMIRIN-----GHRAPRLVVKP-FDMRA 150 (940)
Q Consensus 83 g~~I-~~~~--~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~---~~~L~V~-----~~~~P~~~~~p-~~~~v 150 (940)
+.+- ...+ ++....+|. |.|.+|..+|.+.|.|.|.+....... ...|++. ...+|.+...+ .+...
T Consensus 175 ~~~~~~~~~~~r~~~~~~G~-Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a 253 (1051)
T KOG3513|consen 175 EFPHFVQIDNRRVFSQENGN-LYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETA 253 (1051)
T ss_pred cCCcccccCcceeEecccce-EEEeecchhhcCceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccc
Confidence 6432 2222 333334444 599999999999999999984332221 4455552 22346555543 36778
Q ss_pred cCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEEeeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeecCCCC
Q psy11143 151 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPP 230 (940)
Q Consensus 151 ~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~~~p 230 (940)
..|+.+.|+|.+.|+|.|+|.|.|.+.............+.+|.|.+++.+|+|.|+|.|+|..|.......+.|. .+|
T Consensus 254 ~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~-a~P 332 (1051)
T KOG3513|consen 254 LKGQSVKLECFALGNPTPQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVY-APP 332 (1051)
T ss_pred cCCCeEEEEEEecCCCCCcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEe-cCc
Confidence 8999999999999999999999997764333333334456689999999999999999999999999999999998 899
Q ss_pred eeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCc---eEEeecCeEEEEeeeccCCCeEEEEEEEeCCC
Q psy11143 231 IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH---VTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG 307 (940)
Q Consensus 231 ~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~---~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~G 307 (940)
.++..+.+..+..|++++|.|.+.|.|.|+|+|++||.++....+ ..+ ....|+|.++...|+|.|.|.|+|..|
T Consensus 333 ~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i--~~g~L~is~v~~~dsg~YQC~A~Nk~G 410 (1051)
T KOG3513|consen 333 YWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKI--DDGTLIISNVQESDSGVYQCIAENKYG 410 (1051)
T ss_pred hhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEE--eCCEEEEEecccccCeEEEeeeecccc
Confidence 999999999999999999999999999999999999999986655 444 333599999999999999999999999
Q ss_pred CceeEEEEEEeeccCCeEEEcCCce--eecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCC
Q psy11143 308 SAESVAMIRINGHRAPRLVVKPFDM--RAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQ 385 (940)
Q Consensus 308 s~~~s~~l~V~~~~~P~i~~~p~~~--~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~ 385 (940)
...+++.|.|.. .+|.+...|... .+..|.++.|.|.+.+.|.|.+.|.|++..+..++++.+..+|+|.|.+++.+
T Consensus 411 ~i~anA~L~V~a-~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~ 489 (1051)
T KOG3513|consen 411 TIYANAELKVLA-SAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRS 489 (1051)
T ss_pred eEeeeeEEEEEc-cCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCCcEEecccCcc
Confidence 999999999986 667777666554 67899999999999999999999999999788899999999999999999999
Q ss_pred CCeEEEEEEEeCCeeEEEEEEEEEecCCCCCCCCCCCCCCCCCCCccccccceeeeeecccccCcccceEEEeccCCCCc
Q psy11143 386 DSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVNATINSLFGYHSN 465 (940)
Q Consensus 386 D~G~YtC~A~N~~G~~~~s~~L~V~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~~in~t~~~lf~~~~~ 465 (940)
|+|.|+|.|+|..|.+...+.|.|+.++.+..+|.... ...+ ++++..|.+.+|+.+..++.|.+||++.
T Consensus 490 DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~~------v~~g----~~v~l~Ce~shD~~ld~~f~W~~nG~~i 559 (1051)
T KOG3513|consen 490 DAGKYTCVAENKLGKAESTGNLIVKDATRITLAPSNTD------VKVG----ESVTLTCEASHDPSLDITFTWKKNGRPI 559 (1051)
T ss_pred cCcEEEEEEEcccCccceEEEEEEecCceEEeccchhh------hccC----ceEEEEeecccCCCcceEEEEEECCEEh
Confidence 99999999999999999999999999987655443222 1222 3566789999999999999999999544
No 2
>KOG3513|consensus
Probab=100.00 E-value=1.9e-45 Score=437.82 Aligned_cols=404 Identities=30% Similarity=0.521 Sum_probs=345.2
Q ss_pred cccEEEECCCCCCCCeEEEEEEEcCCce---EEEEEEEEE-------eCCCeEEe-CCCcEEEecCCeEEEEEEeeccCC
Q psy11143 6 SSTELVISGVQREHGGRYSCVAGNPAGV---YRGDLHVTV-------NAPPIFIQ-RPVSTTYSTGSTSRITCLVEGHPL 74 (940)
Q Consensus 6 s~~tL~I~~v~~sDsG~Y~C~a~n~~g~---~~~~v~l~V-------~~pP~~~~-~p~~~~V~eGesv~L~C~v~g~P~ 74 (940)
..+.|.|.++..+|.+.|.|.|.+.... ...-+.|++ ..+|.+.. .|.......|+.|.|.|.+.|+|.
T Consensus 191 ~~G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~ 270 (1051)
T KOG3513|consen 191 ENGNLYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFALGNPT 270 (1051)
T ss_pred ccceEEEeecchhhcCceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEecCCCC
Confidence 4679999999999999999999984432 122244444 23555544 455677889999999999999999
Q ss_pred CeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEEecccCCeeEecCCceeecCCC
Q psy11143 75 PQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGS 154 (940)
Q Consensus 75 p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge 154 (940)
|+|.|+|.+... ...+.++...+.+|.|.+++.+|+|.|+|.|+|..|.......|.|. ..|.++..+.+..+..|+
T Consensus 271 P~i~W~k~~g~~-~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~--a~P~w~~~~~d~~~~~gs 347 (1051)
T KOG3513|consen 271 PQIKWRKVDGKP-PPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVY--APPYWLQKPQDTEADTGS 347 (1051)
T ss_pred CcEEEEeCCCCC-CCcceeeeccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEe--cCchhhcccceeEecCCC
Confidence 999999988752 24456666777889999999999999999999999976667767665 468899999999999999
Q ss_pred cEEEEEEeCCCCCCeEEEeeCCeeccccCc--eEEeeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeecCCCCee
Q psy11143 155 SVEIPCKPDGEPLPRISWSKDEAEFVEDRN--HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIF 232 (940)
Q Consensus 155 ~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~--~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~~~p~~ 232 (940)
+++|.|.+.|.|.|.|+|.+||.++....+ ......+.|.|.+++..|+|.|.|.|+|..|...+++.|.|...+|.+
T Consensus 348 ~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f 427 (1051)
T KOG3513|consen 348 NVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVF 427 (1051)
T ss_pred CeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCC
Confidence 999999999999999999999999976544 133456799999999999999999999999999999999999887888
Q ss_pred eeCCCee--EEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCce
Q psy11143 233 IQRPVST--TYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE 310 (940)
Q Consensus 233 ~~~p~~~--~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~ 310 (940)
...+... .+..|..+.|.|...+.|.|.+.|.|++..+..+.++.+..+|+ |.|.+++.+|+|.|+|.|+|..|..+
T Consensus 428 ~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGt-L~I~n~t~~DaG~YtC~A~N~~G~a~ 506 (1051)
T KOG3513|consen 428 PLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGT-LEISNVTRSDAGKYTCVAENKLGKAE 506 (1051)
T ss_pred CCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCCc-EEecccCcccCcEEEEEEEcccCccc
Confidence 8776555 67789999999999999999999999999888889999999998 99999999999999999999999999
Q ss_pred eEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEeecCcCCC--eEEEEeCCeeecc---CCcEEEee---eceEEEecC
Q psy11143 311 SVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP--RISWSKDEAEFVE---DRNHKIHR---TGSLRLYNI 382 (940)
Q Consensus 311 ~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p--~i~W~k~g~~i~~---~~~~~i~~---~~sL~I~~v 382 (940)
..+.|.|+ .+++|...|....+..|+.++|.|.+.-.|.. .|.|.+||..+.. ...+.... ++.|+|.++
T Consensus 507 ~~~~L~Vk--d~tri~~~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv 584 (1051)
T KOG3513|consen 507 STGNLIVK--DATRITLAPSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANV 584 (1051)
T ss_pred eEEEEEEe--cCceEEeccchhhhccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEee
Confidence 99999887 58999999999999999999999999877665 8999999997642 22333221 245999999
Q ss_pred CCCCCeEEEEEEEeCCeeEEEEEEEEEecCCCC
Q psy11143 383 GPQDSGLYRCTASNLLGEDVAEGYLTVTGENSV 415 (940)
Q Consensus 383 ~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~~~ 415 (940)
+..|+|.|+|+|.-..-+.++.+.|.|+++|.+
T Consensus 585 ~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPgp 617 (1051)
T KOG3513|consen 585 SLEDSGKYTCVAQTALDSASARADLLVRGPPGP 617 (1051)
T ss_pred ccccCceEEEEEEEeecchhcccceEEecCCCC
Confidence 999999999999998888999999999998764
No 3
>KOG2408|consensus
Probab=100.00 E-value=7.1e-46 Score=441.34 Aligned_cols=221 Identities=48% Similarity=0.881 Sum_probs=199.8
Q ss_pred cceeeeccchhhhhheeeEEEEeeccccccc--ccccccccccCcccccccCCCCchhhccccCcCccCCCCccccHHHH
Q psy11143 484 ARTVVRAADVYERTLSHIKKHIQAGVKMNLS--EDLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELT 561 (940)
Q Consensus 484 ~~~~~~Aa~~fg~t~~~i~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (940)
.++|+.||+||||+++.-...+...+...+. .++.+++.||+|+.++.+||+|++++||+++++++.+ |++++.+++
T Consensus 462 sneFataAfRfgHsli~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~i~~~ggid~llrGl~~~~~~~~~-d~~~~~~i~ 540 (719)
T KOG2408|consen 462 SNEFATAAFRFGHSLIPPFFQRLDENFQPIGEVVNLPLHDAFFNPWLILNEGGIDPLLRGLTTQPAKMPD-DQLLNGEIT 540 (719)
T ss_pred hhhhhHHHHhhhcccCchhhhhhcccCcccccccCchhhhhhcchhhhhhccChhHHHHHHHhchhhccc-chhcCHHHH
Confidence 6899999999999995322222222211222 3788999999999999999999999999999999987 899999999
Q ss_pred Hhhhccccchh-hhhhhhhhcccccCCCCcchhhhhHhCCCCcccHHHHHHHhhhHHHHHHHHHhhCCCCCccccCCChh
Q psy11143 562 DKLFTTFHAVS-LDLAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHPGFSYHDVLSPR 640 (940)
Q Consensus 562 ~~~~~~~~~~~-~d~~~~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (940)
++||...+..+ +||+|+|||||||||||+||+||++|||+++++||||.++|. +.++.+|+++|++|+
T Consensus 541 ~~lf~~~~~~~~~DL~ainIQRgRDhGlp~Yn~yR~~cgL~~~~s~edL~~~i~-~~~~~kl~~lY~~~d---------- 609 (719)
T KOG2408|consen 541 ERLFVKTDEDGELDLAALNIQRGRDHGLPPYNEYRKFCGLSPATSFEDLSDEIE-PEIINKLRTLYGTPD---------- 609 (719)
T ss_pred HHHhhhcCcccccchhhhhhhccccCCCCCHHHHHHHcCCCCCCCHHHhhhhhh-HHHHHHHHHhcCCch----------
Confidence 99999987776 999999999999999999999999999999999999999998 999999999999988
Q ss_pred HHHHHHhcccccccccccCCCcccccccccccCCcccCCCCCcccccchhhhccccccccCCCcCCCcCCCCCCCCCCCC
Q psy11143 641 QIELIANLSGCMEHQRTANCSDLCFHTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPILSSPMAGNID 720 (940)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (940)
+|
T Consensus 610 -----------------------------------------------------------------------------di- 611 (719)
T KOG2408|consen 610 -----------------------------------------------------------------------------DI- 611 (719)
T ss_pred -----------------------------------------------------------------------------hh-
Confidence 54
Q ss_pred cccccccccccCCCCcCCccchhhhhhhhhcccCCCCccccceeecccCCCccccccchhhhhhhhccccCCCCccccce
Q psy11143 721 PFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPFVGAI 800 (940)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (940)
|||||++
T Consensus 612 -------------------------------------------------------------------------DL~vG~~ 618 (719)
T KOG2408|consen 612 -------------------------------------------------------------------------DLYVGLL 618 (719)
T ss_pred -------------------------------------------------------------------------ccccccc
Confidence 4999999
Q ss_pred eccccCCCCCCcchhhhhhhhhhhcccCCcccccC--CCCCChhHHhHhhhceeeeeeecCCCceeeEE
Q psy11143 801 LEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYEN--PSTFKPAQLTQIKQASLARVICDSGDRLTEVR 867 (940)
Q Consensus 801 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (940)
+|++++|+++||||.|||++||+|+|+|||||||| ++.||++||.||++.+|++|||+|++.+..+.
T Consensus 619 ~E~~~~g~~vGPTl~cii~~Qf~r~r~gDRf~yen~~~~~Ft~~QL~ei~k~sLariiC~N~~~~~~~~ 687 (719)
T KOG2408|consen 619 LEKPLPGGLVGPTLACIIAEQFLRLRDGDRFWYENFNPGVFTPEQLEEIRKVSLARIICDNGTKITKVS 687 (719)
T ss_pred ccccCCCceecccHHHHHHHHHHHHhccCceeecCCCCCccCHHHHHHHHHhhchheeecCCccccccc
Confidence 99999999999999999999999999999999999 99999999999999999999999988787776
No 4
>PF03098 An_peroxidase: Animal haem peroxidase; InterPro: IPR002007 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. On the basis of sequence similarity, a number of animal haem peroxidases can be categorised as members of a superfamily: myeloperoxidase (MPO); eosinophil peroxidase (EPO); lactoperoxidase (LPO); thyroid peroxidase (TPO); prostaglandin H synthase (PGHS); and peroxidasin [, , ]. MPO plays a major role in the oxygen-dependent microbicidal system of neutrophils. EPO from eosinophilic granulocytes participates in immunological reactions, and potentiates tumor necrosis factor (TNF) production and hydrogen peroxide release by human monocyte-derived macrophages [, ]. In the main, MPO (and possibly EPO) utilises Cl-ions and H2O2 to form hypochlorous acid (HOCl), which can effectively kill bacteria or parasites. In secreted fluids, LPO catalyses the oxidation of thiocyanate ions (SCN-) by H2O2, producing the weak oxidising agent hypothiocyanite (OSCN-), which has bacteriostatic activity []. TPO uses I- ions and H2O2 to generate iodine, and plays a central role in the biosynthesis of thyroid hormones T(3) and T(4). To date, the 3D structures of MPO and PGHS have been reported. MPO is a homodimer: each monomer consists of a light (A or B) and a heavy (C or D) chain resulting from post-translational excision of 6 residues from the common precursor. Monomers are linked by a single inter-chain disulphide. Each monomer includes a bound calcium ion []. PGHS exists as a symmetric dimer, each monomer of which consists of 3 domains: an N-terminal epidermal growth factor (EGF) like module; a membrane-binding domain; and a large C-terminal catalytic domain containing the cyclooxygenase and the peroxidase active sites. The catalytic domain shows striking structural similarity to MPO. The cyclooxygenase active site, which catalyses the formation of prostaglandin G2 (PGG2) from arachidonic acid, resides at the apex of a long hydrophobic channel, extending from the membrane-binding domain to the centre of the molecule. The peroxidase active site, which catalyses the reduction of PGG2 to PGH2, is located on the other side of the molecule, at the haem binding site []. Both MPO and the catalytic domain of PGHS are mainly alpha-helical, 19 helices being identified as topologically and spatially equivalent; PGHS contains 5 additional N-terminal helices that have no equivalent in MPO. In both proteins, three Asn residues in each monomer are glycosylated.; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1FE2_A 1PGG_B 1PGF_A 3N8W_B 1IGZ_A 3KK6_B 3N8Z_A 1Q4G_A 1PTH_A 1EQH_A ....
Probab=100.00 E-value=3.8e-42 Score=407.05 Aligned_cols=223 Identities=44% Similarity=0.829 Sum_probs=188.5
Q ss_pred cceeeeccchhhhhheeeEEEEeecccccccccccccccccCcc-cccccCCCCchhhccccCcCccCCCCccccHHHHH
Q psy11143 484 ARTVVRAADVYERTLSHIKKHIQAGVKMNLSEDLSLGKAFFSPW-RLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTD 562 (940)
Q Consensus 484 ~~~~~~Aa~~fg~t~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (940)
..||+.||+||||+++.-...+...+.-...+.+.|.++||+|. .++.+++++.+++||..|+++..+....++++|++
T Consensus 302 ~~EFa~aA~RfgHs~i~~~~~~~~~~~~~~~~~~~L~d~f~~~~~~~~~~~gid~ll~G~~~~~a~~~d~~~~~~~~l~~ 381 (530)
T PF03098_consen 302 SNEFAAAAYRFGHSMIPDTYDRWDENFEIPEPSLPLSDAFFNPSNRLLEEGGIDPLLRGLASQPAQKVDNPRFLVDDLRN 381 (530)
T ss_dssp BTTH-HHHGGGGGGGS-SEEEEBTTTSBETTSEEEGGGGBT-HH-HHHTTTCSHHHHHHHHHSEEEHHBTTBHSHHHHHT
T ss_pred hHHHHHHHHHhhheeehhhhhhccccCCcccccccccccccCcchhhhhccchHHHHhHHhhCccccccHHHHhhhHhhc
Confidence 68999999999999964332222111100245789999999998 78889999999999999999987433889999999
Q ss_pred hhhccccchh-hhhhhhhhcccccCCCCcchhhhhHhCCCCcccHHHHHHHhhhHHHHHHHHHhhCCCCCccccCCChhH
Q psy11143 563 KLFTTFHAVS-LDLAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHPGFSYHDVLSPRQ 641 (940)
Q Consensus 563 ~~~~~~~~~~-~d~~~~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (940)
+||+.....+ +||+|+|||||||||||+||+||++|||+++++|+||++.+.++.++++|+++|++++
T Consensus 382 ~lf~~~~~~~~~DL~a~nIqRGRdhGLp~yn~~R~~cgl~~~~sf~dl~~~~~~~~i~~~L~~~Y~~vd----------- 450 (530)
T PF03098_consen 382 HLFGPRNVPGSLDLAALNIQRGRDHGLPSYNDYREFCGLPPATSFEDLTDEISDEEIAAALRALYGHVD----------- 450 (530)
T ss_dssp SEESTTSSSEEEHHHHHHHHHHHHTTB-BHHHHHHHTT----SSHHHHHHHHTSHHHHHHHHHHHSSGG-----------
T ss_pred ccccccCCcchhHHHHHHHHHHHHhCCchHHHHHHHhccCCCCCHHHhhhhhhHHHHHHHHHHhccchh-----------
Confidence 9997765554 5999999999999999999999999999999999999999999999999999998877
Q ss_pred HHHHHhcccccccccccCCCcccccccccccCCcccCCCCCcccccchhhhccccccccCCCcCCCcCCCCCCCCCCCCc
Q psy11143 642 IELIANLSGCMEHQRTANCSDLCFHTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPILSSPMAGNIDP 721 (940)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (940)
T Consensus 451 -------------------------------------------------------------------------------- 450 (530)
T PF03098_consen 451 -------------------------------------------------------------------------------- 450 (530)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccCCCCcCCccchhhhhhhhhcccCCCCccccceeecccCCCccccccchhhhhhhhccccCCCCcccccee
Q psy11143 722 FVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPFVGAIL 801 (940)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (940)
+||||+|+|+
T Consensus 451 ----------------------------------------------------------------------dvDL~vG~la 460 (530)
T PF03098_consen 451 ----------------------------------------------------------------------DVDLWVGGLA 460 (530)
T ss_dssp ----------------------------------------------------------------------GSBHHHHHHH
T ss_pred ----------------------------------------------------------------------cccccceeee
Confidence 4559999999
Q ss_pred ccccCCCCCCcchhhhhhhhhhhcccCCcccccCCCCCChhHHhHhhhceeeeeeecCCCceeeEE
Q psy11143 802 EDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQASLARVICDSGDRLTEVR 867 (940)
Q Consensus 802 e~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (940)
|++++|+++||||.|||++||.|+|+||||||||++.||+.||++|++++|++|||+|++.+++||
T Consensus 461 E~~~~G~~lGpt~~~Ii~~qf~~l~~gDRf~yen~~~ft~~ql~~i~~~tla~iic~n~~~~~~iq 526 (530)
T PF03098_consen 461 EKPVPGGLLGPTFSCIIAEQFSRLRRGDRFWYENPGSFTPEQLEEIRKTTLARIICDNTDDITRIQ 526 (530)
T ss_dssp S-BSTTSSSBHHHHHHHHHHHHHHHHTSTTGTTSCTTCTHHHHHHHTTT-HHHHHHHHSTS-SEEE
T ss_pred eccccCCCCCHHHHhHHHHHHHHHHhcCcccccCcCcCCHHHHHHHHHCCHHHHHHhcCCccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999998
No 5
>KOG4222|consensus
Probab=100.00 E-value=8.7e-37 Score=358.59 Aligned_cols=393 Identities=33% Similarity=0.576 Sum_probs=334.1
Q ss_pred CCeEEEEEEEcCCceEEE-EEEEEEe-CCCeEEeCCCcEEEecCCeEEEEEEe-eccCCCeEEEEECCEeecCCCC-eEE
Q psy11143 19 HGGRYSCVAGNPAGVYRG-DLHVTVN-APPIFIQRPVSTTYSTGSTSRITCLV-EGHPLPQMTWFHDGNSLDSDDH-VTY 94 (940)
Q Consensus 19 DsG~Y~C~a~n~~g~~~~-~v~l~V~-~pP~~~~~p~~~~V~eGesv~L~C~v-~g~P~p~V~W~kdg~~I~~~~~-~~~ 94 (940)
|.|.|+|.+.|..|...+ ...|.|. .+..|.+.|.++.+..|+.++|.|.- .|.|.+.|.|.|+|+++..... .+.
T Consensus 103 d~G~y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~ 182 (1281)
T KOG4222|consen 103 DHGVYSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIA 182 (1281)
T ss_pred CCceeEeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEE
Confidence 999999999999987654 2344433 25578888999999999999999996 6799999999999999873222 222
Q ss_pred EeeceEEEEcccccCCCeEEEEEEEeCCCceEE-EEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEe
Q psy11143 95 EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES-VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWS 173 (940)
Q Consensus 95 ~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~-~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~ 173 (940)
...+..|.|.++..+|+|+|.|++.|..|..++ .++|.|.+ .|.+...+.+..|.+|..+.+.|.+.|.|.|.+.|.
T Consensus 183 lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e--~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwk 260 (1281)
T KOG4222|consen 183 LISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQE--KPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWK 260 (1281)
T ss_pred EecCCcEEEeccccCCCceeeeeecccccccccccceeeecc--CCccccccccceeecccccccccccCCCCCCceeee
Confidence 244555699999999999999999999999887 77888875 678999999999999999999999999999999999
Q ss_pred eCCeeccccCceEEeeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEE
Q psy11143 174 KDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLV 253 (940)
Q Consensus 174 k~g~~i~~~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v 253 (940)
+++..++.........+.+|.|.++++.|.|.|.|.+.|..|...+...++|. .+|.+...+....+..|..++|.|.+
T Consensus 261 k~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~-apP~f~kkp~dq~v~lg~~vt~pc~~ 339 (1281)
T KOG4222|consen 261 KDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQ-APPSFGKKPRDQKVALGGTVTFPCET 339 (1281)
T ss_pred ccCCCCCccceeeeeccccccccccCCCcccceeeeccccccccccccceEEe-cCcccccccCccccccCceEEeeeec
Confidence 98888877655555556899999999999999999999999999999999999 88999999999999999999999999
Q ss_pred eeeCCCeEEEEECCeec--------CCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEe-----ec
Q psy11143 254 EGHPLPQMTWFHDGNSL--------DSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN-----GH 320 (940)
Q Consensus 254 ~G~P~p~ItW~k~g~~l--------~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~-----~~ 320 (940)
.|+|.|.+.|.+.|... ..+.+..+...+. |.|.+++..|.|.|.|...+..++......+.+. ..
T Consensus 340 ~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~-L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~r 418 (1281)
T KOG4222|consen 340 LGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGT-LTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSR 418 (1281)
T ss_pred CCCCCcceEEeccCcceecccCCCCCcCccceecCCCC-cccccccccccceEeecccccccccccceeEEEEeeeccCC
Confidence 99999999999987542 2344556666674 9999999999999999988888777554444332 25
Q ss_pred cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeecc-CCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCe
Q psy11143 321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVE-DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLG 399 (940)
Q Consensus 321 ~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~-~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G 399 (940)
.+|.|...+.+++..++..+.|.|.+.|.|.|.+.|.+++-.+.. +.+..+...++|+|.+....|.|.|+|.|.+..|
T Consensus 419 Ppp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~~~s~~~~~~l~i~dl~~~DtG~YTc~as~~~g 498 (1281)
T KOG4222|consen 419 PPPIIEQGPANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNPDSRISQQEIGSLRIRDLKGPDTGRYTCIASDESG 498 (1281)
T ss_pred CCceeeecccccccccCcccccChhhhCCCCCCchhhhcccccccCCcccceeeeceeeeeeeecCCCcceeeeccCccc
Confidence 677888889999999999999999999999999999999876643 3566666778999999999999999999999999
Q ss_pred eEEEEEEEEEecCCCC
Q psy11143 400 EDVAEGYLTVTGENSV 415 (940)
Q Consensus 400 ~~~~s~~L~V~~~~~~ 415 (940)
+...++.|.|......
T Consensus 499 es~wSatl~v~~~~~s 514 (1281)
T KOG4222|consen 499 ESTWSATLTVEKAGSS 514 (1281)
T ss_pred ccccceeeEhhhcCcc
Confidence 9999999999877654
No 6
>KOG4222|consensus
Probab=100.00 E-value=6.5e-36 Score=351.26 Aligned_cols=450 Identities=27% Similarity=0.479 Sum_probs=350.0
Q ss_pred CCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCC--CeEEE-eeceEEEEccc----ccCCCeEEEE
Q psy11143 44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD--HVTYE-HDGFVLVLNGV----RESDAGVYNC 116 (940)
Q Consensus 44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~--~~~~~-~~gs~L~I~~v----~~~DsG~YtC 116 (940)
.+|.++.+|.+..|..|+.++|.|.++|.|+|+|+|||+|..+...+ ..++. .+|+++.+.-+ ...|.|.|+|
T Consensus 30 ~~p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y~c 109 (1281)
T KOG4222|consen 30 QPPRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVYSC 109 (1281)
T ss_pred CCCceEecchhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCceeEe
Confidence 47899999999999999999999999999999999999996543322 23333 66666544433 1238999999
Q ss_pred EEEeCCCceEE-EEEEEEecccCCeeEecCCceeecCCCcEEEEEEe-CCCCCCeEEEeeCCeecc--ccCceEEeeece
Q psy11143 117 VAQNSEGSAES-VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKP-DGEPLPRISWSKDEAEFV--EDRNHKIHRTGS 192 (940)
Q Consensus 117 ~a~n~~g~~~~-~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v-~g~P~p~ItW~k~g~~i~--~~~~~~~~~~~s 192 (940)
++.|..|...+ .+.|.+... .-.|.+.+....+..|+.+.|+|.- .|.|.+.+.|.|+|+.+. ......+...+.
T Consensus 110 vasn~~g~avSr~a~L~vavl-rddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG~ 188 (1281)
T KOG4222|consen 110 VASNRLGEAVSRGASLIVAVL-RDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGGN 188 (1281)
T ss_pred eecCccceeeecCceEEEEEe-chhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCCc
Confidence 99999998877 455555443 2356677788889999999999975 479999999999999886 445566678889
Q ss_pred EEEeecccCCCceEEEEEEcCCcce-eeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecC
Q psy11143 193 LRLYNIGPQDSGLYRCTASNLLGED-VAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLD 271 (940)
Q Consensus 193 L~I~~v~~~DsG~YtC~a~N~~g~~-s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~ 271 (940)
|.|.+++..|+|.|.|++.|.+|.. +..+.|+|. .+|.+...+....+..|..+.+.|.+.|.|.|.+.|.+++..++
T Consensus 189 LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~-e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P 267 (1281)
T KOG4222|consen 189 LLISNVRKSDEGTYACVATNMVGERESIPARLSVQ-EKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLP 267 (1281)
T ss_pred EEEeccccCCCceeeeeecccccccccccceeeec-cCCccccccccceeecccccccccccCCCCCCceeeeccCCCCC
Confidence 9999999999999999999999974 567788888 78889999999999999999999999999999999999888777
Q ss_pred CCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEeecCcCC
Q psy11143 272 SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPL 351 (940)
Q Consensus 272 ~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~ 351 (940)
.. ++.+..+..+|.|.++...|.|.|.|.+.|..|..+..+.++|+ .+|.+...|.+..+..|..++|.|.+.|.|.
T Consensus 268 ~~-ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~--apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~ 344 (1281)
T KOG4222|consen 268 RS-RYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQ--APPSFGKKPRDQKVALGGTVTFPCETLGNPP 344 (1281)
T ss_pred cc-ceeeeeccccccccccCCCcccceeeeccccccccccccceEEe--cCcccccccCccccccCceEEeeeecCCCCC
Confidence 54 56676776669999999999999999999999999999999997 5899999999999999999999999999999
Q ss_pred CeEEEEeCCeee--------ccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecCCCC-CCCCCCC
Q psy11143 352 PRISWSKDEAEF--------VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSV-EPAPHTS 422 (940)
Q Consensus 352 p~i~W~k~g~~i--------~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~~~-~~~p~~~ 422 (940)
|.+.|.|.|... ..+.+.++...++|.|.+++..|.|.|.|...|..|+....+++.+...-.. .|.|...
T Consensus 345 PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~ 424 (1281)
T KOG4222|consen 345 PAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIE 424 (1281)
T ss_pred cceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccceeEEEEeeeccCCCCceee
Confidence 999999988632 2356778888899999999999999999999999999888888777654332 2222211
Q ss_pred CCCCCCCCccccccceeeeeecccccCcccceEEEeccCCCCccccc-------cccc-eeeeeccCCccceeeeccchh
Q psy11143 423 REPSASKPSVADDTIHMAVKLASREVDAAVNATINSLFGYHSNEQQD-------HGSL-MKLLRFPDESARTVVRAADVY 494 (940)
Q Consensus 423 ~~~~~~~~~~~d~~~~~~~~~~~~~~d~~in~t~~~lf~~~~~~~~~-------~~~l-l~l~r~p~~~~~~~~~Aa~~f 494 (940)
.-+......++ ..+...|.+..++.. .+.||.++-.....+ .+.+ .+-++.+ |.|+|.|.|+..-
T Consensus 425 ~g~~nQtl~v~----s~a~l~c~atg~P~p--~i~wl~dg~~v~~~d~~~s~~~~~~l~i~dl~~~-DtG~YTc~as~~~ 497 (1281)
T KOG4222|consen 425 QGPANQTLPVG----STASLPCSATGAPTP--NISWLKDGCNVMNPDSRISQQEIGSLRIRDLKGP-DTGRYTCIASDES 497 (1281)
T ss_pred ecccccccccC----cccccChhhhCCCCC--CchhhhcccccccCCcccceeeeceeeeeeeecC-CCcceeeeccCcc
Confidence 11212111221 234456666666654 556787663222111 1111 1222333 6799999999888
Q ss_pred hhhheeeEEEE
Q psy11143 495 ERTLSHIKKHI 505 (940)
Q Consensus 495 g~t~~~i~~~v 505 (940)
|.+.-.....+
T Consensus 498 ges~wSatl~v 508 (1281)
T KOG4222|consen 498 GESTWSATLTV 508 (1281)
T ss_pred cccccceeeEh
Confidence 87765444433
No 7
>KOG4221|consensus
Probab=100.00 E-value=3.4e-35 Score=346.87 Aligned_cols=364 Identities=25% Similarity=0.501 Sum_probs=303.8
Q ss_pred CCCeEEeCCCcEEEecCCeEEEEEEeec--cCCCeEEEEECCEeecCCCCeEEE--eeceEEEEccccc-----CCCeEE
Q psy11143 44 APPIFIQRPVSTTYSTGSTSRITCLVEG--HPLPQMTWFHDGNSLDSDDHVTYE--HDGFVLVLNGVRE-----SDAGVY 114 (940)
Q Consensus 44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g--~P~p~V~W~kdg~~I~~~~~~~~~--~~gs~L~I~~v~~-----~DsG~Y 114 (940)
.+..|.++|.+. .+|.++.|.|.+.. .+.++|.|.|||..+....+.+.. .+|++ .|.++.. -|+|.|
T Consensus 40 ~~~~f~~ep~d~--~~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~~d~~~~~LsNgSl-~i~~v~~~kh~~~~eg~Y 116 (1381)
T KOG4221|consen 40 TPLQFLLEPSDA--MEGSSVLLECSAYAAGGTSVKIEWKKDGSQLNEVYDDRRQLLSNGSL-YISSVLASKHNKVDEGVY 116 (1381)
T ss_pred CcceEEeccccc--ccccceEEeccccccCCCCeeEEEccCchhhhhhhhhHHhhccCCce-eEeeecccccccccCceE
Confidence 456788888854 89999999999743 347799999999887654332222 56655 8888876 789999
Q ss_pred EEEEEeC-CCceEE-EEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEEeeece
Q psy11143 115 NCVAQNS-EGSAES-VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS 192 (940)
Q Consensus 115 tC~a~n~-~g~~~~-~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~~~~s 192 (940)
+|.|+-. .|..-+ .+.|.+. ..+.|...+.+.++..|+++.|.|.+.+.|.+.+.|.++..+++.+.++.+..++.
T Consensus 117 qc~atv~~~gsi~Sr~a~v~~a--~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lpsG~ 194 (1381)
T KOG4221|consen 117 QCLATVEDVGSILSRTAKVALA--GLADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLPSGA 194 (1381)
T ss_pred EEEEEccccceeecceEEEEec--ccCccccCccceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcCCCc
Confidence 9999876 333333 5555554 35678889999999999999999999999999999999999998888888899999
Q ss_pred EEEeecccCCCceEEEEEEcCCcc-eeeeeeeeecCCC-----CeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEEC
Q psy11143 193 LRLYNIGPQDSGLYRCTASNLLGE-DVAEGYLTVTGAP-----PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD 266 (940)
Q Consensus 193 L~I~~v~~~DsG~YtC~a~N~~g~-~s~s~~L~V~~~~-----p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~ 266 (940)
|.|.++++.|.|.|+|.+++.... .+..+.|+|...+ ..|...|....+.+|+++.|.|.+.|.|.|+|.|.+|
T Consensus 195 L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrn 274 (1381)
T KOG4221|consen 195 LEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRN 274 (1381)
T ss_pred EEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeC
Confidence 999999999999999999987554 3556777776322 2356678888999999999999999999999999999
Q ss_pred CeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEee
Q psy11143 267 GNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKP 346 (940)
Q Consensus 267 g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v 346 (940)
|..|..+........+.+|.|.+++..|+|.|+|.|+|......+++.|.|. .+|.|...|.+..+.++.++.|.|.+
T Consensus 275 g~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~--a~P~~~~~p~~l~A~e~~die~ec~~ 352 (1381)
T KOG4221|consen 275 GEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVL--APPGFTKAPTTLVAHESMDIEFECPV 352 (1381)
T ss_pred CeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEE--cCCCCCCCCcceeeeeccceeEeCCC
Confidence 9999876633333335569999999999999999999987777777888876 57999999999999999999999999
Q ss_pred cCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecCCC
Q psy11143 347 DGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENS 414 (940)
Q Consensus 347 ~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~~ 414 (940)
.|.|.|.+.|+|+|..+..+..+.+...+.|.|..+-..|+|.|.|.++|..|...+.+.|.|...+.
T Consensus 353 ~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~ 420 (1381)
T KOG4221|consen 353 SGKPIPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPA 420 (1381)
T ss_pred CCCCcceEEEEecCcccCcccceEecCCCCcEEEEEecccchhhhhhhccCcccccchhhheeccCCc
Confidence 99999999999999988778888887777799999999999999999999999999999987665543
No 8
>KOG4221|consensus
Probab=100.00 E-value=8.7e-35 Score=343.44 Aligned_cols=406 Identities=26% Similarity=0.407 Sum_probs=317.6
Q ss_pred cccEEEECCCCC-----CCCeEEEEEEEcC-Cce-EEEEEEEEEeCCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEE
Q psy11143 6 SSTELVISGVQR-----EHGGRYSCVAGNP-AGV-YRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMT 78 (940)
Q Consensus 6 s~~tL~I~~v~~-----sDsG~Y~C~a~n~-~g~-~~~~v~l~V~~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~ 78 (940)
++++|.|.++.. -|+|.|+|.|.-. .|. .+....|.+...+.|..++.+.++..|+++.|.|.+.+.|.+.+.
T Consensus 94 sNgSl~i~~v~~~kh~~~~eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~ 173 (1381)
T KOG4221|consen 94 SNGSLYISSVLASKHNKVDEGVYQCLATVEDVGSILSRTAKVALAGLADFALQPESTTLLYGQTALFSCEVNAEPVPTIM 173 (1381)
T ss_pred cCCceeEeeecccccccccCceEEEEEEccccceeecceEEEEecccCccccCccceeEecCCcEEEEEEEcCccCceeE
Confidence 577899999887 7999999999854 443 455667777788899999999999999999999999999999999
Q ss_pred EEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEE-EEEEEEecccC----CeeEecCCceeecCC
Q psy11143 79 WFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES-VAMIRINGHRA----PRLVVKPFDMRAPAG 153 (940)
Q Consensus 79 W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~-~~~L~V~~~~~----P~~~~~p~~~~v~~G 153 (940)
|.|+..+++...+.....+|.+ .|.++++.|.|.|+|.|++......+ .+.|+|...+. -.|...|.+..+.+|
T Consensus 174 w~kn~~pl~~~~r~i~lpsG~L-~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g 252 (1381)
T KOG4221|consen 174 WLKNDQPLPLDSRVIVLPSGAL-EISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEG 252 (1381)
T ss_pred EecccccccCCCcEEEcCCCcE-EecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccC
Confidence 9999998887775555566655 99999999999999999987655444 77888874322 245677888999999
Q ss_pred CcEEEEEEeCCCCCCeEEEeeCCeeccccC-ceEEeeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeecCCCCee
Q psy11143 154 SSVEIPCKPDGEPLPRISWSKDEAEFVEDR-NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIF 232 (940)
Q Consensus 154 e~vtL~C~v~g~P~p~ItW~k~g~~i~~~~-~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~~~p~~ 232 (940)
+.+.|+|.+.+.|.|+|.|.+++..+.-+. ++.+...+.|.|.+++..|+|.|+|.|.|......+.+.|.|. .+|.+
T Consensus 253 ~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~-a~P~~ 331 (1381)
T KOG4221|consen 253 DDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVL-APPGF 331 (1381)
T ss_pred CcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEE-cCCCC
Confidence 999999999999999999999999886554 3444556789999999999999999999977777888889998 77999
Q ss_pred eeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeE
Q psy11143 233 IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESV 312 (940)
Q Consensus 233 ~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s 312 (940)
...|......++.++.|.|.+.|.|.|.+.|+|||..+..+..+++..++. |+|..+-..|.|.|.|.++|..|.....
T Consensus 332 ~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~-lrIlgi~~sdeg~yQcvaen~~G~a~a~ 410 (1381)
T KOG4221|consen 332 TKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGN-LRILGIVKSDEGFYQCVAENDAGSAQAA 410 (1381)
T ss_pred CCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCCC-cEEEEEecccchhhhhhhccCcccccch
Confidence 999999999999999999999999999999999999988888888888888 9999999999999999999999999988
Q ss_pred EEEEEeeccC----CeEEEcCCceeecCCCeEEEEEe-----ecCcCCCeEEEEeCCeeeccCCcEEEeeec-eEEEecC
Q psy11143 313 AMIRINGHRA----PRLVVKPFDMRAPAGSSVEIPCK-----PDGEPLPRISWSKDEAEFVEDRNHKIHRTG-SLRLYNI 382 (940)
Q Consensus 313 ~~l~V~~~~~----P~i~~~p~~~~v~~G~~vtL~C~-----v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~-sL~I~~v 382 (940)
+.+.+..... +.+-..|.++.+..-++-.+.|. ..+.+.+.++|++.............+..| .+.+.++
T Consensus 411 a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~rer~~~tss~g~~~tv~nl 490 (1381)
T KOG4221|consen 411 AQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEGDVRERLQNTSSPGIQVTVQNL 490 (1381)
T ss_pred hhheeccCCcccccCccccCCcceecccccceeEEEeecCccccCCCcceEEEEEecCCchhhhheeccCCceEEEeeec
Confidence 8886643210 11112222333333333333333 334566788998644332222222233334 2344444
Q ss_pred CCCCCeEEEEEEEeCCeeEEEEEEEEEecCCC
Q psy11143 383 GPQDSGLYRCTASNLLGEDVAEGYLTVTGENS 414 (940)
Q Consensus 383 ~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~~ 414 (940)
.......+.|.|.|..|....+..|+|..+++
T Consensus 491 ~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pE 522 (1381)
T KOG4221|consen 491 SPLTMYFFRVRAKNEAGSGESSAPLKVTTQPE 522 (1381)
T ss_pred ccceeEEEEEeccCcccCCccCCceEEecCCC
Confidence 44433344568899999999999999998774
No 9
>PLN02283 alpha-dioxygenase
Probab=99.97 E-value=1.5e-31 Score=314.94 Aligned_cols=212 Identities=19% Similarity=0.244 Sum_probs=165.0
Q ss_pred cceeeeccchhhhhheeeEEEEeeccc-------ccccccccccccccCc-ccccccCCCCchhhccccCcCccCCCCcc
Q psy11143 484 ARTVVRAADVYERTLSHIKKHIQAGVK-------MNLSEDLSLGKAFFSP-WRLVDEGGVDPLLRGFITSPAKRKRPTEN 555 (940)
Q Consensus 484 ~~~~~~Aa~~fg~t~~~i~~~v~~~~~-------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (940)
+.|| .|++|| |+++.-...+..... ....+.+.+.+.++.. ...+.+.|++++++||..|+++... .+
T Consensus 373 s~EF-~aaYR~-Hslip~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~l~~~Gl~~ll~~l~~q~aga~~--l~ 448 (633)
T PLN02283 373 TEEF-TSVYRM-HSLLPDHLILRDITAAPGENKSPPLIEEIPMPELIGLKGEKKLSKIGFEKLMVSMGHQACGALE--LW 448 (633)
T ss_pred hHHH-HHHHhh-hhcCCCceecccccccccccccccccccccHHHHHhhcccccccccCHHHHHHHHhhcchhccc--cc
Confidence 5667 478998 998643322221110 0112234455444321 1233467899999999999998763 22
Q ss_pred ccHH-HHH----hhhccccchhhhhhhhhhcccccCCCCcchhhhhHhCCCCcccHHHHHHHhhhHHHHHHHHHhhC-CC
Q psy11143 556 LNKE-LTD----KLFTTFHAVSLDLAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYG-HP 629 (940)
Q Consensus 556 ~~~~-~~~----~~~~~~~~~~~d~~~~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 629 (940)
..+. +++ .+++..+..++||+|+|||||||||||+||+||++|||+++++||||+. |+++++.|+++|+ ++
T Consensus 449 n~p~~l~~l~~~~~~g~~~~~g~DLaal~IqRgRDhGlp~YNefR~~~gL~~~~sFedlt~---d~e~~~~L~~lY~~~v 525 (633)
T PLN02283 449 NYPSWMRDLVPQDIDGEDRPDHVDMAALEIYRDRERGVARYNEFRRNLLMIPISKWEDLTD---DEEAIEVLREVYGDDV 525 (633)
T ss_pred cCcHHHHhhhhccccCCcccccccHHHHHHHhhhhcCCccHHHHHHHcCCCCCCCHHHcCC---CHHHHHHHHHHhCCCH
Confidence 3333 333 2345455578999999999999999999999999999999999999984 7899999999998 67
Q ss_pred CCccccCCChhHHHHHHhcccccccccccCCCcccccccccccCCcccCCCCCcccccchhhhccccccccCCCcCCCcC
Q psy11143 630 GFSYHDVLSPRQIELIANLSGCMEHQRTANCSDLCFHTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAP 709 (940)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (940)
+
T Consensus 526 d------------------------------------------------------------------------------- 526 (633)
T PLN02283 526 E------------------------------------------------------------------------------- 526 (633)
T ss_pred H-------------------------------------------------------------------------------
Confidence 6
Q ss_pred CCCCCCCCCCCcccccccccccCCCCcCCccchhhhhhhhhcccCCCCccccceeecccCCCccccccchhhhhhhhccc
Q psy11143 710 ILSSPMAGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIR 789 (940)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (940)
T Consensus 527 -------------------------------------------------------------------------------- 526 (633)
T PLN02283 527 -------------------------------------------------------------------------------- 526 (633)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccccceeccccCCCCCCcchhhhhhhhhhhcccCCcccccC--CCCCChhHHhHhhhc-eeeeeeecCCCce
Q psy11143 790 DGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYEN--PSTFKPAQLTQIKQA-SLARVICDSGDRL 863 (940)
Q Consensus 790 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 863 (940)
+||||||+++|++++|+.+||||.||++.||.|+++||||||++ ++.||+.||++|+++ +|++|||+|-..+
T Consensus 527 --dVDL~VG~laE~~v~G~~vG~T~~~i~~~~a~r~~~gDRF~~en~np~~fT~~gl~~I~~t~tl~dvl~r~~p~~ 601 (633)
T PLN02283 527 --KLDLLVGLMAEKKIKGFAISETAFFIFLLMASRRLEADRFFTSNFNEKTYTKKGLEWVNTTESLKDVIDRHYPEM 601 (633)
T ss_pred --HHHhhhhheecccCCCCCcCHHHHHHHHHHHHHHhcCCCCeEecCCcCcCCHHHHHHHHccCcHHHHHHHhCcch
Confidence 45599999999999999999999999999999999999999995 889999999999996 9999999997654
No 10
>KOG4194|consensus
Probab=99.95 E-value=2.1e-27 Score=263.90 Aligned_cols=274 Identities=27% Similarity=0.492 Sum_probs=228.4
Q ss_pred eCCCeEEeCCCcEEEecCCeEEEEEEeec--cCCCeEEEEECCEeecCC---CCeEEE---ee---------ceEEEEcc
Q psy11143 43 NAPPIFIQRPVSTTYSTGSTSRITCLVEG--HPLPQMTWFHDGNSLDSD---DHVTYE---HD---------GFVLVLNG 105 (940)
Q Consensus 43 ~~pP~~~~~p~~~~V~eGesv~L~C~v~g--~P~p~V~W~kdg~~I~~~---~~~~~~---~~---------gs~L~I~~ 105 (940)
..+|.+..+|..+....|+.++|+|.+.+ ..+.++.|.++++..+.- ...++. .+ ...|.+.+
T Consensus 501 spkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~n 580 (873)
T KOG4194|consen 501 SPKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDN 580 (873)
T ss_pred CCCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeee
Confidence 35688899999999999999999999976 445599999988743211 111111 01 13489999
Q ss_pred cccCCCeEEEEEEEeCCCceEE-EEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCee-ccc--
Q psy11143 106 VRESDAGVYNCVAQNSEGSAES-VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAE-FVE-- 181 (940)
Q Consensus 106 v~~~DsG~YtC~a~n~~g~~~~-~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~-i~~-- 181 (940)
|+..|+|.|+|+++|..|+..+ .++++|.. .|.|...|.+.+...|+...|.|.++|.|.|+|.|.|+|.. .+.
T Consensus 581 Vt~td~grYQCVvtN~FGStysqk~KltV~~--~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~ 658 (873)
T KOG4194|consen 581 VTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQ--APSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAAR 658 (873)
T ss_pred eecccCceEEEEEecccCcchhheeEEEeec--cCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhh
Confidence 9999999999999999998776 77888765 68899999999999999999999999999999999997765 443
Q ss_pred cCceEE-eeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEeeeCC-C
Q psy11143 182 DRNHKI-HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPL-P 259 (940)
Q Consensus 182 ~~~~~~-~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~-p 259 (940)
..+..+ ..+..+.|.+|..+|.|.|+|.|.|.+|..++++.|+|. ..|.+..+.....|..|+++.|.|.+.|.|. |
T Consensus 659 eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~-e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~p 737 (873)
T KOG4194|consen 659 ERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVL-ETPSFSIPLEDQLVVVGETLVLQCLAEGAPADP 737 (873)
T ss_pred hheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEe-cCCcccccccceEEEecceEEEEEecCCCCCCc
Confidence 233333 344579999999999999999999999999999999999 6667777788899999999999999999887 9
Q ss_pred eEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEee
Q psy11143 260 QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 319 (940)
Q Consensus 260 ~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~ 319 (940)
.+.|+|+.+++....+.++..+...|++.+...+|+|.|+|...|..|.......+.+..
T Consensus 738 r~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~ 797 (873)
T KOG4194|consen 738 RLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQ 797 (873)
T ss_pred cccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEee
Confidence 999999999998877777777777799999999999999999999999887766666543
No 11
>KOG4194|consensus
Probab=99.95 E-value=1e-26 Score=258.37 Aligned_cols=276 Identities=26% Similarity=0.491 Sum_probs=228.2
Q ss_pred cccCCeeEecCCceeecCCCcEEEEEEeCC--CCCCeEEEeeCCeeccccC-----ce-EEe----------eeceEEEe
Q psy11143 135 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDG--EPLPRISWSKDEAEFVEDR-----NH-KIH----------RTGSLRLY 196 (940)
Q Consensus 135 ~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g--~P~p~ItW~k~g~~i~~~~-----~~-~~~----------~~~sL~I~ 196 (940)
..+.|.+...|..+....|+.++|+|.+.+ ..+.++.|.++....+... .+ ... ..+.|.+.
T Consensus 500 DspkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~ 579 (873)
T KOG4194|consen 500 DSPKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLD 579 (873)
T ss_pred CCCCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeee
Confidence 446688899999999999999999999986 4556999999765332210 00 000 12359999
Q ss_pred ecccCCCceEEEEEEcCCcce-eeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCee-cC--C
Q psy11143 197 NIGPQDSGLYRCTASNLLGED-VAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNS-LD--S 272 (940)
Q Consensus 197 ~v~~~DsG~YtC~a~N~~g~~-s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~-l~--~ 272 (940)
+|+..|+|.|.|+++|..|.. +..++++|. ..|.+...|.+.++..|+.+.|.|.++|.|.|+|.|.|+|.. .+ .
T Consensus 580 nVt~td~grYQCVvtN~FGStysqk~KltV~-~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~ 658 (873)
T KOG4194|consen 580 NVTFTDEGRYQCVVTNHFGSTYSQKAKLTVN-QAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAAR 658 (873)
T ss_pred eeecccCceEEEEEecccCcchhheeEEEee-ccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhh
Confidence 999999999999999999985 557788888 778899999999999999999999999999999999998765 44 3
Q ss_pred CCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEeecCcCC-
Q psy11143 273 DDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPL- 351 (940)
Q Consensus 273 ~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~- 351 (940)
..+..+..+...+.|.+++.+|+|.|+|.|.|..|..++.+.+.|. ..|.+..+..+..+..|+++.|.|.+.+.|.
T Consensus 659 eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~--e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~ 736 (873)
T KOG4194|consen 659 ERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVL--ETPSFSIPLEDQLVVVGETLVLQCLAEGAPAD 736 (873)
T ss_pred hheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEe--cCCcccccccceEEEecceEEEEEecCCCCCC
Confidence 4456666666669999999999999999999999999999999997 4677777777889999999999999999998
Q ss_pred CeEEEEeCCeeeccCCcEEEee-eceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecCC
Q psy11143 352 PRISWSKDEAEFVEDRNHKIHR-TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGEN 413 (940)
Q Consensus 352 p~i~W~k~g~~i~~~~~~~i~~-~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~ 413 (940)
|.+.|+|+++++.-.++..... +.-|++.+...+|+|.|+|+.+|..|.......+.|...+
T Consensus 737 pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~~ 799 (873)
T KOG4194|consen 737 PRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQKK 799 (873)
T ss_pred ccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeecC
Confidence 9999999998886555555443 3457888999999999999999999988887777766554
No 12
>KOG2408|consensus
Probab=99.94 E-value=3.3e-28 Score=290.47 Aligned_cols=161 Identities=43% Similarity=0.750 Sum_probs=141.2
Q ss_pred ccccCCChhHHHHHHhcccccccccccCCCcccccccccccCCcccCCCCCcccccchhhhccccccccCCCcCCCcCCC
Q psy11143 632 SYHDVLSPRQIELIANLSGCMEHQRTANCSDLCFHTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPIL 711 (940)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (940)
+..++++..++...++.++|..++...+|.++|||.||||+||+|||+.+|+||+|+++|+|||||.|||||++|.+|..
T Consensus 114 ~~~d~~~~~~~~~~~~~s~~~~~~~~~~c~~~~~~~~yRt~dG~CNN~~~P~~Gas~~~~~Rllpp~Yedg~~~p~~~~~ 193 (719)
T KOG2408|consen 114 NVTDLLPERHLHVNPRASGCVCSQPPPVCLNDCFHSKYRTIDGTCNNLRNPTLGASNSPFRRLLPPKYEDGFSTPRGWSD 193 (719)
T ss_pred ccccccccccccccccccCcccCCCCCCccCcccccCccccccccCCCCCCCcccccChhhccCCccccccccCcccccc
Confidence 56788888888888999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCCCCCCcccccccccccCCCCcCCccchhhhhhhhhcccCCCCccccceeecccCCCccccccchhhhhhhhccccC
Q psy11143 712 SSPMAGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDG 791 (940)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (940)
+.
T Consensus 194 ~~------------------------------------------------------------------------------ 195 (719)
T KOG2408|consen 194 GT------------------------------------------------------------------------------ 195 (719)
T ss_pred CC------------------------------------------------------------------------------
Confidence 61
Q ss_pred CCCccccceeccccCCCCCCcchhhhhhhhhhhcccCCcccccCCCCCChhHHhHhhhceeeeeeecCCCceeeEEEeec
Q psy11143 792 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQASLARVICDSGDRLTEVRVCFS 871 (940)
Q Consensus 792 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (940)
. +|..|+ +++.|-.
T Consensus 196 ---~---------lP~~R~-------------------------------------vS~~l~~----------------- 209 (719)
T KOG2408|consen 196 ---P---------LPSARL-------------------------------------VSNKLLS----------------- 209 (719)
T ss_pred ---C---------CCchHH-------------------------------------hhHhhhc-----------------
Confidence 1 666666 4444432
Q ss_pred CCCCccccCCCceecccccccceecCCCCCCcccccccc-ccCCCcccccCCCCCccceecCCCCCCCC
Q psy11143 872 PRPTTSITPDPVITHMVMQWGQFLDHDLDHAIPATSLES-WEGIDCKKSCAFSPPCFPMEVPHDDPGPT 939 (940)
Q Consensus 872 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 939 (940)
... .++++.++||+||||||+|||+.+++..+.... +.+..|.+.|...++||||.+|++||...
T Consensus 210 -~~~--~~~~~~~~~~~mqwgQFi~HDl~~~~~~~~~~~~~~~~~C~~~~~~~p~C~pi~~p~~dp~~~ 275 (719)
T KOG2408|consen 210 -RSF--SPPDSKFNHMAMQWGQFIDHDLYFTPLSTVQNGELNIRCCNKPQLPSPPCFPIKIPPNDPYFP 275 (719)
T ss_pred -ccc--CCCCcchhHHHHHHHHHhcccccccCCcccccCCccccccCCCcCCCCcccceecCCCCCccC
Confidence 011 559999999999999999999999888888876 68888999999999999999999999864
No 13
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.94 E-value=2.2e-25 Score=249.05 Aligned_cols=251 Identities=20% Similarity=0.342 Sum_probs=184.2
Q ss_pred ceeecCCCcEEEEEEe-----CCCCCCeEEEeeCCeeccccCceEEeeeceEEEeecccCCCceEEEEEEcCCcceeeee
Q psy11143 147 DMRAPAGSSVEIPCKP-----DGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG 221 (940)
Q Consensus 147 ~~~v~~Ge~vtL~C~v-----~g~P~p~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~ 221 (940)
...+.+|+.+.|.|.+ .|.|.++++|+|++.... .......+..|.|.++..+|+|.|+|.+.|..+....++
T Consensus 35 ~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~--~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~ 112 (326)
T PHA02785 35 SFMELENEPVILPCPQINTLSSGYNILDILWEKRGADND--RIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMSL 112 (326)
T ss_pred hhhhhcCCCEEEECCCccccccCCCCceEEEEECCCccc--eEEEccCCceEEEcccCcccCeEEEEEEECCCcceEEEE
Confidence 3446689999999997 688999999999875321 112222233588999999999999999999998888888
Q ss_pred eeeecCCC-CeeeeCCCeeEEecCCeEEEEEE-----EeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCC
Q psy11143 222 YLTVTGAP-PIFIQRPVSTTYSTGSTSRITCL-----VEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDA 295 (940)
Q Consensus 222 ~L~V~~~~-p~~~~~p~~~~v~~G~~v~L~C~-----v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~Ds 295 (940)
.|.|.... +.+...+....+.+|..+.|.|. ..+.|.+.|+|+++.. + ...++....++ .|.|.+++.+|+
T Consensus 113 ~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r~~~~~~~-~L~i~~v~~~d~ 189 (326)
T PHA02785 113 NLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKRLKQRTPG-IITIEDVRKNDA 189 (326)
T ss_pred EEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcceEecCCC-eEEEeecChhhC
Confidence 88886433 22323334456778999999996 2467889999998643 3 23344443333 599999999999
Q ss_pred eEEEEEEEeCCCCceeE----EEEEEeeccCCeEEEcCCceeecCCCeEEEEEeecCcCCC---eEEEEeCCeeeccC--
Q psy11143 296 GVYNCVAQNSEGSAESV----AMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP---RISWSKDEAEFVED-- 366 (940)
Q Consensus 296 G~YtC~A~N~~Gs~~~s----~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p---~i~W~k~g~~i~~~-- 366 (940)
|.|+|.|.|..|..... +.+.|.....|.....|....+..|+.++|.|.+.|.|.+ .|.|+|||..+...
T Consensus 190 G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~ 269 (326)
T PHA02785 190 GYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDE 269 (326)
T ss_pred eEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCC
Confidence 99999999998876433 2344433233333455677788899999999999998874 89999999877432
Q ss_pred ---CcEEEe-----------eeceEEEecCCCCCCeEEEEEEEeCCeeEE
Q psy11143 367 ---RNHKIH-----------RTGSLRLYNIGPQDSGLYRCTASNLLGEDV 402 (940)
Q Consensus 367 ---~~~~i~-----------~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~ 402 (940)
.++... ..+.|.|.+++.+|+|.|+|.|.|..|...
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~ 319 (326)
T PHA02785 270 DGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSISK 319 (326)
T ss_pred CCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCceE
Confidence 122211 145799999999999999999999886443
No 14
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.94 E-value=3.3e-25 Score=247.59 Aligned_cols=248 Identities=21% Similarity=0.362 Sum_probs=185.3
Q ss_pred EEecCCeEEEEEEe-----eccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEE
Q psy11143 56 TYSTGSTSRITCLV-----EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAM 130 (940)
Q Consensus 56 ~V~eGesv~L~C~v-----~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~ 130 (940)
.+.+|+.+.|.|.+ .|+|.++|+|+|+|.... +......+..|.|.++..+|+|.|+|.+.|..|....++.
T Consensus 37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~---~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~ 113 (326)
T PHA02785 37 MELENEPVILPCPQINTLSSGYNILDILWEKRGADND---RIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMSLN 113 (326)
T ss_pred hhhcCCCEEEECCCccccccCCCCceEEEEECCCccc---eEEEccCCceEEEcccCcccCeEEEEEEECCCcceEEEEE
Confidence 45689999999997 688989999999985321 1112234556789999999999999999999988888888
Q ss_pred EEEecccCCeeEecCCceeecCCCcEEEEEE-----eCCCCCCeEEEeeCCeeccccCceEEeeeceEEEeecccCCCce
Q psy11143 131 IRINGHRAPRLVVKPFDMRAPAGSSVEIPCK-----PDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGL 205 (940)
Q Consensus 131 L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~-----v~g~P~p~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~~~DsG~ 205 (940)
|+|....++.+...+.+..+.+|+.+.|.|. ..+.|.+.++|+++.. + ...+.....++.|.|.+++.+|+|.
T Consensus 114 L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r~~~~~~~~L~i~~v~~~d~G~ 191 (326)
T PHA02785 114 LTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKRLKQRTPGIITIEDVRKNDAGY 191 (326)
T ss_pred EEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcceEecCCCeEEEeecChhhCeE
Confidence 8887654444444445566789999999997 2467889999987542 2 3344444456789999999999999
Q ss_pred EEEEEEcCCcceee----eeeeeecC--CCCeeeeCCCeeEEecCCeEEEEEEEeeeCCC---eEEEEECCeecCCCC--
Q psy11143 206 YRCTASNLLGEDVA----EGYLTVTG--APPIFIQRPVSTTYSTGSTSRITCLVEGHPLP---QMTWFHDGNSLDSDD-- 274 (940)
Q Consensus 206 YtC~a~N~~g~~s~----s~~L~V~~--~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p---~ItW~k~g~~l~~~~-- 274 (940)
|+|.+.|..+.... .+.|.|.. .+|. ...|....+..|+.++|.|.+.|.|.+ .+.|++||..+....
T Consensus 192 Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~-~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~ 270 (326)
T PHA02785 192 YTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPT-MQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDED 270 (326)
T ss_pred EEEEEEeccCCEEEeEEEEEEEEEeccCCCce-ecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCC
Confidence 99999998776533 33455542 2333 345667778889999999999998864 899999999885421
Q ss_pred ---ceEEee----------cCeEEEEeeeccCCCeEEEEEEEeCCCCc
Q psy11143 275 ---HVTYEH----------DGFVLVLNGVRESDAGVYNCVAQNSEGSA 309 (940)
Q Consensus 275 ---~~~~~~----------~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~ 309 (940)
++.... ....|+|.+++.+|.|.|+|.|.|..|..
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~ 318 (326)
T PHA02785 271 GDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSIS 318 (326)
T ss_pred CceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCce
Confidence 222111 12359999999999999999999988443
No 15
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.74 E-value=6.5e-17 Score=170.69 Aligned_cols=158 Identities=20% Similarity=0.361 Sum_probs=122.7
Q ss_pred CceeecCCCcEEEEEEeCCCC-----------CCeEEEeeCCeec--cc-cCc--------eE-EeeeceEEEeecccCC
Q psy11143 146 FDMRAPAGSSVEIPCKPDGEP-----------LPRISWSKDEAEF--VE-DRN--------HK-IHRTGSLRLYNIGPQD 202 (940)
Q Consensus 146 ~~~~v~~Ge~vtL~C~v~g~P-----------~p~ItW~k~g~~i--~~-~~~--------~~-~~~~~sL~I~~v~~~D 202 (940)
....+.+|+++.|.|.+.+.| .+++.|+|.+... .. ..+ .. ...+++|.|.+++.+|
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D 109 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID 109 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence 456788999999999987644 3489999987542 10 011 01 1224689999999999
Q ss_pred CceEEEEEEcCCcceeeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEe-----eeCCCeEEEEECCeecCCCCceE
Q psy11143 203 SGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVE-----GHPLPQMTWFHDGNSLDSDDHVT 277 (940)
Q Consensus 203 sG~YtC~a~N~~g~~s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~-----G~P~p~ItW~k~g~~l~~~~~~~ 277 (940)
+|.|+|.|.|..+.....+.|.|... +....+.+|+.++|.|.+. +.|.|+|+|+|+|.++..+.++.
T Consensus 110 sG~Y~C~a~N~~~~~~~~i~L~V~~~-------~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~ 182 (227)
T PHA02826 110 EGIYICTISSGNICEESTIRLTFDSG-------TINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQ 182 (227)
T ss_pred CEEEEEEEEECCcceEEEEEEEEecC-------CccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEE
Confidence 99999999998888887887877521 2334677899999999985 34678999999999998777777
Q ss_pred EeecCeEEEEeeeccCCCeEEEEEEEeCCCCce
Q psy11143 278 YEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE 310 (940)
Q Consensus 278 ~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~ 310 (940)
+..++.+|.|.+++.+|+|.|+|.|+...+...
T Consensus 183 ~~~~~~~L~I~~V~~~DsG~YtC~a~~~~~g~~ 215 (227)
T PHA02826 183 LRNNNSTLVIKSATHDDSGIYTCNLRFNKNSNN 215 (227)
T ss_pred EeCCCCEEEECcCCHHhCEEEEEEEEEeECCEE
Confidence 766666799999999999999999998754443
No 16
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.72 E-value=1.8e-16 Score=167.25 Aligned_cols=155 Identities=15% Similarity=0.230 Sum_probs=118.6
Q ss_pred CeeEEecCCeEEEEEEEeeeCC-----------CeEEEEECCeec--C-CCCc--------eEEeecCeEEEEeeeccCC
Q psy11143 237 VSTTYSTGSTSRITCLVEGHPL-----------PQMTWFHDGNSL--D-SDDH--------VTYEHDGFVLVLNGVRESD 294 (940)
Q Consensus 237 ~~~~v~~G~~v~L~C~v~G~P~-----------p~ItW~k~g~~l--~-~~~~--------~~~~~~g~sL~I~~v~~~D 294 (940)
....+.+|+++.|.|.+.++|. +.+.|+|++... . .+.+ ..+...+..|.|.+++.+|
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D 109 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID 109 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence 4567889999999999877553 489999987542 1 1111 0111224469999999999
Q ss_pred CeEEEEEEEeCCCCceeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEeec-----CcCCCeEEEEeCCeeeccCCcE
Q psy11143 295 AGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPD-----GEPLPRISWSKDEAEFVEDRNH 369 (940)
Q Consensus 295 sG~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~-----g~P~p~i~W~k~g~~i~~~~~~ 369 (940)
+|.|+|.|.|..+..+.++.|.|.. + +.+..+.+|+++.|.|.+. +.|.|+|+|+|++..+..+.++
T Consensus 110 sG~Y~C~a~N~~~~~~~~i~L~V~~--~------~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~ 181 (227)
T PHA02826 110 EGIYICTISSGNICEESTIRLTFDS--G------TINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRI 181 (227)
T ss_pred CEEEEEEEEECCcceEEEEEEEEec--C------CccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCE
Confidence 9999999999888877777776632 1 1234667899999999986 3467899999999998877676
Q ss_pred EEee-eceEEEecCCCCCCeEEEEEEEeCCe
Q psy11143 370 KIHR-TGSLRLYNIGPQDSGLYRCTASNLLG 399 (940)
Q Consensus 370 ~i~~-~~sL~I~~v~~~D~G~YtC~A~N~~G 399 (940)
.+.. .++|.|.+++.+|+|.|+|.|...++
T Consensus 182 ~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~~ 212 (227)
T PHA02826 182 QLRNNNSTLVIKSATHDDSGIYTCNLRFNKN 212 (227)
T ss_pred EEeCCCCEEEECcCCHHhCEEEEEEEEEeEC
Confidence 6654 35899999999999999999998653
No 17
>KOG3515|consensus
Probab=99.68 E-value=8.4e-16 Score=181.06 Aligned_cols=406 Identities=19% Similarity=0.262 Sum_probs=258.2
Q ss_pred cccEEEECCCCCCCCeEEEEEEEcCCce-EEEEEEEEEeCCCeEEeCCCcEEEecCCeEEEEEEee--ccCCCeEEEEEC
Q psy11143 6 SSTELVISGVQREHGGRYSCVAGNPAGV-YRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVE--GHPLPQMTWFHD 82 (940)
Q Consensus 6 s~~tL~I~~v~~sDsG~Y~C~a~n~~g~-~~~~v~l~V~~pP~~~~~p~~~~V~eGesv~L~C~v~--g~P~p~V~W~kd 82 (940)
...+|...+...+.-+.|.|++.|..+. ......+.|..+|.-...........+..+.+.|.+. +.|.+.+.|+.+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n 136 (741)
T KOG3515|consen 57 ADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFN 136 (741)
T ss_pred cCCceeeecchhhhhhhhhhhhcccccCceecceeeccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeec
Confidence 3557788888888899999999998664 3455777888888766665666677889999999664 577889999998
Q ss_pred CEeecCCCC--eEEE--------eeceEEEEcccccCCCeEEEEEEEeCCCc---eEEEEEEEEecccCCeeEe-cCCce
Q psy11143 83 GNSLDSDDH--VTYE--------HDGFVLVLNGVRESDAGVYNCVAQNSEGS---AESVAMIRINGHRAPRLVV-KPFDM 148 (940)
Q Consensus 83 g~~I~~~~~--~~~~--------~~gs~L~I~~v~~~DsG~YtC~a~n~~g~---~~~~~~L~V~~~~~P~~~~-~p~~~ 148 (940)
+........ ..+. ...+.+.+...+.+|.|.|+|.|.+.... ......+.+.......... .....
T Consensus 137 ~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~q 216 (741)
T KOG3515|consen 137 NRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQ 216 (741)
T ss_pred cEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccccCccccccceeEeecccccccceecchhhcC
Confidence 765432221 1111 22445788989999999999999985333 2234444443322222222 22235
Q ss_pred eecCCCcEEEEEEeC-CCCCCeEEEeeCCeeccccCceEEe-----eeceEEEeecccCCCceEEEEEEcCCcceeeeee
Q psy11143 149 RAPAGSSVEIPCKPD-GEPLPRISWSKDEAEFVEDRNHKIH-----RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY 222 (940)
Q Consensus 149 ~v~~Ge~vtL~C~v~-g~P~p~ItW~k~g~~i~~~~~~~~~-----~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~ 222 (940)
...+|+.+.|.|.+. |+|.+.++|+++............. ....+.+..-...+.-...|.+.| ....+..
T Consensus 217 sF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n---~~~~~~~ 293 (741)
T KOG3515|consen 217 SFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN---LLAASQI 293 (741)
T ss_pred cccccceEEEEehhhcCCcchhhhhccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccC---cccccee
Confidence 788999999999776 5899999999977665443111100 111233322233334467899998 1122222
Q ss_pred eeecCCCCeeeeCCCeeEEecCCeEEEEEEEe-eeCCCeEEEEECCeecCCCCceE--EeecC----eEEEEeeeccCCC
Q psy11143 223 LTVTGAPPIFIQRPVSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVT--YEHDG----FVLVLNGVRESDA 295 (940)
Q Consensus 223 L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~-G~P~p~ItW~k~g~~l~~~~~~~--~~~~g----~sL~I~~v~~~Ds 295 (940)
+.+...+-...+.+....+..|.+..+.|... ++|.+.+.|+|+........... ....+ ..+........|.
T Consensus 294 tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~ 373 (741)
T KOG3515|consen 294 TAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDG 373 (741)
T ss_pred eecccccccccccCcccccccccccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcC
Confidence 33332232333444555588899999999764 57888999999655432221110 00111 1255566778999
Q ss_pred eEEEEEEEeCCCCceeEEEEEEeeccCCeEEEc-CCceeecCCCeEEEEEeecCcCC-CeEEEEeCCeeeccCC--cEEE
Q psy11143 296 GVYNCVAQNSEGSAESVAMIRINGHRAPRLVVK-PFDMRAPAGSSVEIPCKPDGEPL-PRISWSKDEAEFVEDR--NHKI 371 (940)
Q Consensus 296 G~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~-p~~~~v~~G~~vtL~C~v~g~P~-p~i~W~k~g~~i~~~~--~~~i 371 (940)
|.|+|.+.|.......+....+.+.++|.+... ...+...+++.....-.+.++|. +.+.|.+.+.++.... .+.+
T Consensus 374 g~v~c~a~~~~~~~~sss~~~l~~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v 453 (741)
T KOG3515|consen 374 GQVTCPADNLELAHSSSSSFLLPVLPSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVRV 453 (741)
T ss_pred ceEEccccccccccccccceeccccCCchhhhhcccceeeccCccccccCcccCCCcccchhheecceecccccCceEEe
Confidence 999999999886666666666666566665543 22333444444443333335554 5999999988775433 2333
Q ss_pred ee-eceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecCCC
Q psy11143 372 HR-TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENS 414 (940)
Q Consensus 372 ~~-~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~~ 414 (940)
.. .+-..+.++...|.|.|.|.|.|..|.+.....+.+...+.
T Consensus 454 ~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~sp~ 497 (741)
T KOG3515|consen 454 GAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHTSPH 497 (741)
T ss_pred eccccccccceeeeccCCcceeeeccCCCceeeEEeeccccCCc
Confidence 22 33445777999999999999999999988887766665543
No 18
>KOG3515|consensus
Probab=99.64 E-value=3.3e-15 Score=176.12 Aligned_cols=356 Identities=19% Similarity=0.284 Sum_probs=216.9
Q ss_pred CeEEeCCCcEEEecCCeEEEEEEeecc-CCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCc
Q psy11143 46 PIFIQRPVSTTYSTGSTSRITCLVEGH-PLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 124 (940)
Q Consensus 46 P~~~~~p~~~~V~eGesv~L~C~v~g~-P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~ 124 (940)
|.....+.+..+.+|+.|.|.|.+.++ |.+.|.||+.++.+. .+..... ...|.........-+.|.|.+.|..+.
T Consensus 8 pv~~~~~l~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~c~a~ns~~~ 84 (741)
T KOG3515|consen 8 PVCESSSLTVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH--GRYATIA-DPTLVTTGDVRDTVAELNCRAFNSVGM 84 (741)
T ss_pred ccccCCCCChhhccCCcceeeeecCCCCCCcceEEEecCcccc--ccccccc-CCceeeecchhhhhhhhhhhhcccccC
Confidence 344444445578999999999999875 456999999988765 1111112 233566677777788999999998555
Q ss_pred eEE-EEEEEEecccCCeeEecCCceeecCCCcEEEEEEeC--CCCCCeEEEeeCCeeccccCc-----------eEEeee
Q psy11143 125 AES-VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPD--GEPLPRISWSKDEAEFVEDRN-----------HKIHRT 190 (940)
Q Consensus 125 ~~~-~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~--g~P~p~ItW~k~g~~i~~~~~-----------~~~~~~ 190 (940)
... ...+.+. .+|.-...........+..+.+.|.+. +.|.+.+.|..+......... ......
T Consensus 85 ~~~~~~~l~v~--~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~ 162 (741)
T KOG3515|consen 85 PSRCPMILDVD--YPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEP 162 (741)
T ss_pred ceecceeeccc--cCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccc
Confidence 443 3333333 344333333344566788999999655 577889999987654322110 011223
Q ss_pred ceEEEeecccCCCceEEEEEEcCC---cceeeeeeeeecCCCCeeee--CCCeeEEecCCeEEEEEEEe-eeCCCeEEEE
Q psy11143 191 GSLRLYNIGPQDSGLYRCTASNLL---GEDVAEGYLTVTGAPPIFIQ--RPVSTTYSTGSTSRITCLVE-GHPLPQMTWF 264 (940)
Q Consensus 191 ~sL~I~~v~~~DsG~YtC~a~N~~---g~~s~s~~L~V~~~~p~~~~--~p~~~~v~~G~~v~L~C~v~-G~P~p~ItW~ 264 (940)
..+.+...+.++.|.|+|.+.|.. +.......+.|......+.. ........+|+.+.|.|.+. |+|.++++|+
T Consensus 163 s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~ 242 (741)
T KOG3515|consen 163 SLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWY 242 (741)
T ss_pred cceeeEEEEecCCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhc
Confidence 457888888999999999999843 23333333444322222222 23335788999999999765 4799999999
Q ss_pred ECCeecCCCCceEEeecCe----EEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEeeccCCe-EEEcCCceeecCCCe
Q psy11143 265 HDGNSLDSDDHVTYEHDGF----VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPR-LVVKPFDMRAPAGSS 339 (940)
Q Consensus 265 k~g~~l~~~~~~~~~~~g~----sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~~~~P~-i~~~p~~~~v~~G~~ 339 (940)
++..............++. .+.+..-.....-...|.+.|. +. .+..+.+. .+|. ..+.+....+..|++
T Consensus 243 ~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n~-~~--~~~~tav~--~~~~~~~Ist~~~~ls~g~s 317 (741)
T KOG3515|consen 243 KDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASNL-LA--ASQITAVQ--VKPTAVPISTSDSGLSSGRS 317 (741)
T ss_pred cccccchhhhcccCCCCCCcccccccccccccchhhhhhccccCc-cc--cceeeecc--cccccccccCcccccccccc
Confidence 9987765542211111221 1333333344455677999982 21 12222222 1221 122333445778999
Q ss_pred EEEEEee-cCcCCCeEEEEeCCeeeccCCcEE-------EeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEec
Q psy11143 340 VEIPCKP-DGEPLPRISWSKDEAEFVEDRNHK-------IHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411 (940)
Q Consensus 340 vtL~C~v-~g~P~p~i~W~k~g~~i~~~~~~~-------i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~ 411 (940)
..+.|.. .++|.+.+.|+|+........... ....-.+....+...|.|.|+|.|.|.......+....+..
T Consensus 318 ~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~~ 397 (741)
T KOG3515|consen 318 ARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLPV 397 (741)
T ss_pred cccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceeccc
Confidence 9999875 456878999999654332211000 01111356667788899999999999886665555555443
No 19
>PF03098 An_peroxidase: Animal haem peroxidase; InterPro: IPR002007 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. On the basis of sequence similarity, a number of animal haem peroxidases can be categorised as members of a superfamily: myeloperoxidase (MPO); eosinophil peroxidase (EPO); lactoperoxidase (LPO); thyroid peroxidase (TPO); prostaglandin H synthase (PGHS); and peroxidasin [, , ]. MPO plays a major role in the oxygen-dependent microbicidal system of neutrophils. EPO from eosinophilic granulocytes participates in immunological reactions, and potentiates tumor necrosis factor (TNF) production and hydrogen peroxide release by human monocyte-derived macrophages [, ]. In the main, MPO (and possibly EPO) utilises Cl-ions and H2O2 to form hypochlorous acid (HOCl), which can effectively kill bacteria or parasites. In secreted fluids, LPO catalyses the oxidation of thiocyanate ions (SCN-) by H2O2, producing the weak oxidising agent hypothiocyanite (OSCN-), which has bacteriostatic activity []. TPO uses I- ions and H2O2 to generate iodine, and plays a central role in the biosynthesis of thyroid hormones T(3) and T(4). To date, the 3D structures of MPO and PGHS have been reported. MPO is a homodimer: each monomer consists of a light (A or B) and a heavy (C or D) chain resulting from post-translational excision of 6 residues from the common precursor. Monomers are linked by a single inter-chain disulphide. Each monomer includes a bound calcium ion []. PGHS exists as a symmetric dimer, each monomer of which consists of 3 domains: an N-terminal epidermal growth factor (EGF) like module; a membrane-binding domain; and a large C-terminal catalytic domain containing the cyclooxygenase and the peroxidase active sites. The catalytic domain shows striking structural similarity to MPO. The cyclooxygenase active site, which catalyses the formation of prostaglandin G2 (PGG2) from arachidonic acid, resides at the apex of a long hydrophobic channel, extending from the membrane-binding domain to the centre of the molecule. The peroxidase active site, which catalyses the reduction of PGG2 to PGH2, is located on the other side of the molecule, at the haem binding site []. Both MPO and the catalytic domain of PGHS are mainly alpha-helical, 19 helices being identified as topologically and spatially equivalent; PGHS contains 5 additional N-terminal helices that have no equivalent in MPO. In both proteins, three Asn residues in each monomer are glycosylated.; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1FE2_A 1PGG_B 1PGF_A 3N8W_B 1IGZ_A 3KK6_B 3N8Z_A 1Q4G_A 1PTH_A 1EQH_A ....
Probab=99.63 E-value=1.4e-17 Score=197.77 Aligned_cols=40 Identities=60% Similarity=1.113 Sum_probs=32.2
Q ss_pred ccccCCcccCCCCCcccccchhhhccccccccCCCcCCCc
Q psy11143 669 YRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVA 708 (940)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (940)
|||+||+|||+.||.||++.|||+|+|||.|.||+++|..
T Consensus 1 yRt~dG~cNN~~~p~~G~~~~~~~Rllp~~Y~dg~~~pr~ 40 (530)
T PF03098_consen 1 YRTYDGSCNNLANPSWGAAGTPFRRLLPPAYADGVSEPRG 40 (530)
T ss_dssp S--SSSTTSSSSSTTTT-SSEE-BESS-B--TTSSSBTTT
T ss_pred CCCCCCCccCCCcccccCCCCcccccCCcccccccccccc
Confidence 9999999999999999999999999999999999999887
No 20
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.54 E-value=7.7e-14 Score=128.15 Aligned_cols=92 Identities=29% Similarity=0.421 Sum_probs=83.5
Q ss_pred CeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEee---eceEEEecCCCCCCeEEEEEEEeCCe
Q psy11143 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR---TGSLRLYNIGPQDSGLYRCTASNLLG 399 (940)
Q Consensus 323 P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~---~~sL~I~~v~~~D~G~YtC~A~N~~G 399 (940)
|.|...+.++.+..|+.+.|.|.+.|.|.|.+.|+|+|..+..+.++.+.. .+.|+|.++..+|+|.|+|.|.|..|
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G 80 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLG 80 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCC
Confidence 567888889999999999999999999999999999999998776666653 45799999999999999999999999
Q ss_pred eEEEEEEEEEecCCC
Q psy11143 400 EDVAEGYLTVTGENS 414 (940)
Q Consensus 400 ~~~~s~~L~V~~~~~ 414 (940)
...+++.|.|.+.|.
T Consensus 81 ~~~~~~~l~V~~~P~ 95 (98)
T cd05762 81 SRQAQVNLTVVDKPD 95 (98)
T ss_pred ceeEEEEEEEecCCC
Confidence 999999999998865
No 21
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.50 E-value=2.7e-13 Score=124.49 Aligned_cols=94 Identities=19% Similarity=0.358 Sum_probs=83.4
Q ss_pred CeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEE--eeceEEEEcccccCCCeEEEEEEEeCCC
Q psy11143 46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE--HDGFVLVLNGVRESDAGVYNCVAQNSEG 123 (940)
Q Consensus 46 P~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~--~~gs~L~I~~v~~~DsG~YtC~a~n~~g 123 (940)
|.|...|.+..+.+|+.+.|.|.+.|.|+++|.|+|+|..|....+.++. ...+.|.|.++..+|+|.|+|.|.|..|
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G 80 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLG 80 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCC
Confidence 56788899999999999999999999999999999999999866666655 3456689999999999999999999999
Q ss_pred ceEEEEEEEEecccCC
Q psy11143 124 SAESVAMIRINGHRAP 139 (940)
Q Consensus 124 ~~~~~~~L~V~~~~~P 139 (940)
....++.|.|.+.+.|
T Consensus 81 ~~~~~~~l~V~~~P~p 96 (98)
T cd05762 81 SRQAQVNLTVVDKPDP 96 (98)
T ss_pred ceeEEEEEEEecCCCC
Confidence 9999999999876543
No 22
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.49 E-value=1.7e-13 Score=123.31 Aligned_cols=88 Identities=30% Similarity=0.518 Sum_probs=78.1
Q ss_pred CCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeE
Q psy11143 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 401 (940)
Q Consensus 322 ~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~ 401 (940)
||.|...+.+..+.+|++++|.|.+.|.|.|.++|+|++..+....++.. ..+.|.|.++..+|+|.|+|.|.|..|..
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 79 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISM-SGAVLKIFNIQPEDEGTYECEAENIKGKD 79 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEec-CCCEEEECcCChhhCEEEEEEEEcCCCce
Confidence 58888889999999999999999999999999999999987765544433 35589999999999999999999999999
Q ss_pred EEEEEEEEe
Q psy11143 402 VAEGYLTVT 410 (940)
Q Consensus 402 ~~s~~L~V~ 410 (940)
..++.|.|+
T Consensus 80 ~~~~~l~V~ 88 (88)
T cd05851 80 KHQARVYVQ 88 (88)
T ss_pred EEEEEEEEC
Confidence 999999874
No 23
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.44 E-value=9.3e-13 Score=118.48 Aligned_cols=87 Identities=22% Similarity=0.417 Sum_probs=76.7
Q ss_pred CCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCc
Q psy11143 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 124 (940)
Q Consensus 45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~ 124 (940)
||.+...+.+..+.+|+.+.|.|.+.|+|.|.|+|+|++..+.... ++...+..|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 78 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATA--EISMSGAVLKIFNIQPEDEGTYECEAENIKGK 78 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCC--EEecCCCEEEECcCChhhCEEEEEEEEcCCCc
Confidence 5788899999999999999999999999999999999998876543 34445567899999999999999999999999
Q ss_pred eEEEEEEEE
Q psy11143 125 AESVAMIRI 133 (940)
Q Consensus 125 ~~~~~~L~V 133 (940)
....+.|.|
T Consensus 79 ~~~~~~l~V 87 (88)
T cd05851 79 DKHQARVYV 87 (88)
T ss_pred eEEEEEEEE
Confidence 988888776
No 24
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.43 E-value=4.7e-13 Score=115.92 Aligned_cols=73 Identities=40% Similarity=0.677 Sum_probs=68.4
Q ss_pred CCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy11143 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409 (940)
Q Consensus 337 G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 409 (940)
|+.+.|.|.+.|.|.|.|.|+|++..+..+.++.+..+++|.|.+++.+|+|.|+|.|.|..|+...++.|+|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 6889999999999999999999999888778888878889999999999999999999999999999999875
No 25
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.43 E-value=5.1e-13 Score=116.01 Aligned_cols=74 Identities=34% Similarity=0.706 Sum_probs=67.9
Q ss_pred CCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy11143 336 AGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409 (940)
Q Consensus 336 ~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 409 (940)
+|+++.|.|.+.|.|.|.|+|+|++..+....+..+..+++|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 58999999999999999999999999887766666667789999999999999999999999999999998875
No 26
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.39 E-value=2.9e-12 Score=115.18 Aligned_cols=88 Identities=31% Similarity=0.541 Sum_probs=76.2
Q ss_pred CCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeE
Q psy11143 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 401 (940)
Q Consensus 322 ~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~ 401 (940)
||.+...|.+..+.+|++++|.|.+.|.|.|.++|+|++..+....... ...+.|.|.+++.+|+|.|+|.|.|..|..
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~ 79 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS-MSGAVLKIPNIQFEDEGTYECEAENIKGKD 79 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE-EeCCEEEECCCCcccCEEEEEEEEECCCcE
Confidence 4667777888889999999999999999999999999887665544333 456799999999999999999999999999
Q ss_pred EEEEEEEEe
Q psy11143 402 VAEGYLTVT 410 (940)
Q Consensus 402 ~~s~~L~V~ 410 (940)
..++.|.|.
T Consensus 80 ~~~~~l~V~ 88 (88)
T cd04968 80 THQGRIYVQ 88 (88)
T ss_pred EEEEEEEEC
Confidence 999999873
No 27
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.39 E-value=2.7e-12 Score=116.43 Aligned_cols=87 Identities=24% Similarity=0.499 Sum_probs=78.0
Q ss_pred cCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEee---eceEEEecCCCCCCeEEEEEEEeC
Q psy11143 321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR---TGSLRLYNIGPQDSGLYRCTASNL 397 (940)
Q Consensus 321 ~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~---~~sL~I~~v~~~D~G~YtC~A~N~ 397 (940)
.||.|...|.+..+.+|+.+.|.|.+.|+|.|.+.|+|+|..+..+.++.+.. .++|.|.++..+|+|.|+|.|.|.
T Consensus 2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~ 81 (92)
T cd05747 2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENS 81 (92)
T ss_pred CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcC
Confidence 47888888999999999999999999999999999999999887766666654 358999999999999999999999
Q ss_pred CeeEEEEEEE
Q psy11143 398 LGEDVAEGYL 407 (940)
Q Consensus 398 ~G~~~~s~~L 407 (940)
.|....++.|
T Consensus 82 ~G~~~~~~~l 91 (92)
T cd05747 82 EGKQEAQFTL 91 (92)
T ss_pred CCCEeEEEEe
Confidence 9998888776
No 28
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.37 E-value=2.7e-12 Score=110.53 Aligned_cols=71 Identities=27% Similarity=0.551 Sum_probs=65.3
Q ss_pred eEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy11143 339 SVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409 (940)
Q Consensus 339 ~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 409 (940)
+++|.|.+.|.|.|.++|+|++..+....++.+..++.|.|.++..+|+|.|+|.|.|..|+..+++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 47899999999999999999999887777777777889999999999999999999999999999998875
No 29
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.36 E-value=3.8e-12 Score=113.68 Aligned_cols=84 Identities=31% Similarity=0.540 Sum_probs=74.6
Q ss_pred EEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEE
Q psy11143 325 LVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE 404 (940)
Q Consensus 325 i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s 404 (940)
|...|.+..+..|+.++|.|.+.|.|.|.+.|+|++..+....++.+ .++.|.|.++..+|+|.|+|.|.|..|...++
T Consensus 2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~-~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~ 80 (85)
T cd05728 2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEV-EAGDLRITKLSLSDSGMYQCVAENKHGTIYAS 80 (85)
T ss_pred ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEE-eCCEEEEeeCCHHHCEEEEEEEECCCCeEEEE
Confidence 34567788999999999999999999999999999998876666554 56789999999999999999999999999999
Q ss_pred EEEEE
Q psy11143 405 GYLTV 409 (940)
Q Consensus 405 ~~L~V 409 (940)
+.|.|
T Consensus 81 ~~l~V 85 (85)
T cd05728 81 AELAV 85 (85)
T ss_pred EEEEC
Confidence 98875
No 30
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.35 E-value=4.6e-12 Score=116.84 Aligned_cols=80 Identities=19% Similarity=0.319 Sum_probs=69.9
Q ss_pred ceeecCCCeEEEEEeecC-cCCCeEEEEeCCeeeccCCcEEEee--------eceEEEecCCCCCCeEEEEEEEeCCeeE
Q psy11143 331 DMRAPAGSSVEIPCKPDG-EPLPRISWSKDEAEFVEDRNHKIHR--------TGSLRLYNIGPQDSGLYRCTASNLLGED 401 (940)
Q Consensus 331 ~~~v~~G~~vtL~C~v~g-~P~p~i~W~k~g~~i~~~~~~~i~~--------~~sL~I~~v~~~D~G~YtC~A~N~~G~~ 401 (940)
.+.+.+|+++.|.|.+.| .|.|.+.|+|+|.++.......+.. .++|.|..+..+|+|.|+|.|+|..|..
T Consensus 12 ~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~ 91 (101)
T cd04975 12 TIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK 91 (101)
T ss_pred eEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccE
Confidence 567889999999999999 8999999999999987654433322 3679999999999999999999999999
Q ss_pred EEEEEEEEe
Q psy11143 402 VAEGYLTVT 410 (940)
Q Consensus 402 ~~s~~L~V~ 410 (940)
+.++.|.|.
T Consensus 92 ~~t~~L~V~ 100 (101)
T cd04975 92 SLTFELYVN 100 (101)
T ss_pred EEEEEEEEE
Confidence 999999886
No 31
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.35 E-value=3.6e-12 Score=110.86 Aligned_cols=70 Identities=24% Similarity=0.471 Sum_probs=61.2
Q ss_pred EEEEEeecCcCCCeEEEEeCCeeecc-CCcEEEeee--c--eEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy11143 340 VEIPCKPDGEPLPRISWSKDEAEFVE-DRNHKIHRT--G--SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409 (940)
Q Consensus 340 vtL~C~v~g~P~p~i~W~k~g~~i~~-~~~~~i~~~--~--sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 409 (940)
|.|.|.+.|.|.|.|.|+|++..+.. ..++.+..+ + +|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 57999999999999999999998874 356665433 2 7999999999999999999999999999999875
No 32
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.35 E-value=1.1e-11 Score=111.40 Aligned_cols=87 Identities=34% Similarity=0.617 Sum_probs=79.5
Q ss_pred CeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEee---eceEEEecCCCCCCeEEEEEEEeCCe
Q psy11143 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR---TGSLRLYNIGPQDSGLYRCTASNLLG 399 (940)
Q Consensus 323 P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~---~~sL~I~~v~~~D~G~YtC~A~N~~G 399 (940)
|.|...+.++.+.+|++++|.|.+.|.|.|.+.|++++..+..+.++.+.. ..+|.|.++..+|+|.|+|.|.|..|
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g 80 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSG 80 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCC
Confidence 678888889999999999999999999999999999999998877777654 44899999999999999999999999
Q ss_pred eEEEEEEEEE
Q psy11143 400 EDVAEGYLTV 409 (940)
Q Consensus 400 ~~~~s~~L~V 409 (940)
..+.++.|.|
T Consensus 81 ~~~~~~~l~V 90 (90)
T PF07679_consen 81 EATASVNLTV 90 (90)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEC
Confidence 9999999876
No 33
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.35 E-value=8.4e-12 Score=113.20 Aligned_cols=88 Identities=31% Similarity=0.566 Sum_probs=76.2
Q ss_pred CCCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEee--ceEEEEcccccCCCeEEEEEEEeC
Q psy11143 44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD--GFVLVLNGVRESDAGVYNCVAQNS 121 (940)
Q Consensus 44 ~pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~--gs~L~I~~v~~~DsG~YtC~a~n~ 121 (940)
.||.+...|....+.+|+.+.|.|.+.|+|.|.+.|+|+|..+....+..+... ...|.|.+++.+|+|.|+|.|.|.
T Consensus 2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~ 81 (92)
T cd05747 2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENS 81 (92)
T ss_pred CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcC
Confidence 478888999999999999999999999999999999999998876656555432 356899999999999999999999
Q ss_pred CCceEEEEEE
Q psy11143 122 EGSAESVAMI 131 (940)
Q Consensus 122 ~g~~~~~~~L 131 (940)
.|.......|
T Consensus 82 ~G~~~~~~~l 91 (92)
T cd05747 82 EGKQEAQFTL 91 (92)
T ss_pred CCCEeEEEEe
Confidence 9987776654
No 34
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.34 E-value=9.2e-12 Score=114.83 Aligned_cols=82 Identities=24% Similarity=0.345 Sum_probs=69.5
Q ss_pred CcEEEecCCeEEEEEEeec-cCCCeEEEEECCEeecCCCCeEEEee-------ceEEEEcccccCCCeEEEEEEEeCCCc
Q psy11143 53 VSTTYSTGSTSRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYEHD-------GFVLVLNGVRESDAGVYNCVAQNSEGS 124 (940)
Q Consensus 53 ~~~~V~eGesv~L~C~v~g-~P~p~V~W~kdg~~I~~~~~~~~~~~-------gs~L~I~~v~~~DsG~YtC~a~n~~g~ 124 (940)
..+.+.+|+++.|.|.+.| .|+|.|.|+|||.+|.......+... ++.|.|.++..+|+|.|+|.|.|..|.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~ 90 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence 4678999999999999999 89999999999999975444332222 367899999999999999999999999
Q ss_pred eEEEEEEEEe
Q psy11143 125 AESVAMIRIN 134 (940)
Q Consensus 125 ~~~~~~L~V~ 134 (940)
.+..+.|.|.
T Consensus 91 ~~~t~~L~V~ 100 (101)
T cd04975 91 KSLTFELYVN 100 (101)
T ss_pred EEEEEEEEEE
Confidence 8888888775
No 35
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.33 E-value=8.3e-12 Score=113.88 Aligned_cols=90 Identities=27% Similarity=0.502 Sum_probs=74.2
Q ss_pred CCeEEEcC--CceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccC-CcEEEeee-ceEEEecCCCCCCeEEEEEEEeC
Q psy11143 322 APRLVVKP--FDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED-RNHKIHRT-GSLRLYNIGPQDSGLYRCTASNL 397 (940)
Q Consensus 322 ~P~i~~~p--~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~-~~~~i~~~-~sL~I~~v~~~D~G~YtC~A~N~ 397 (940)
||.|...+ .+..+..|+++.|.|.+.|.|.|.|.|+|+|..+... .++..... +.|.|.+++.+|+|.|+|.|.|.
T Consensus 1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 80 (95)
T cd05730 1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENK 80 (95)
T ss_pred CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcC
Confidence 45554433 3457889999999999999999999999999988654 44444433 46999999999999999999999
Q ss_pred CeeEEEEEEEEEec
Q psy11143 398 LGEDVAEGYLTVTG 411 (940)
Q Consensus 398 ~G~~~~s~~L~V~~ 411 (940)
.|....++.|.|..
T Consensus 81 ~G~~~~~~~L~V~~ 94 (95)
T cd05730 81 AGEQEAEIHLKVFA 94 (95)
T ss_pred CCeEEEEEEEEEEe
Confidence 99999999998864
No 36
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.33 E-value=5.3e-12 Score=109.25 Aligned_cols=73 Identities=38% Similarity=0.684 Sum_probs=67.7
Q ss_pred CCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy11143 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409 (940)
Q Consensus 337 G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 409 (940)
|+++.|.|.+.|.|.|.++|+|++..+....++.+..+++|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 6889999999999999999999999988777887777789999999999999999999999999999988875
No 37
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.33 E-value=1.3e-11 Score=110.94 Aligned_cols=88 Identities=33% Similarity=0.690 Sum_probs=78.1
Q ss_pred CeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEe--eceEEEEcccccCCCeEEEEEEEeCCC
Q psy11143 46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH--DGFVLVLNGVRESDAGVYNCVAQNSEG 123 (940)
Q Consensus 46 P~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~--~gs~L~I~~v~~~DsG~YtC~a~n~~g 123 (940)
|.|...+.++.+.+|+++.|.|.+.+.|.+.+.|+++|..+....+..+.. ....|.|.++..+|+|.|+|.|.|..|
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g 80 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSG 80 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCC
Confidence 567888899999999999999999999999999999999998877777763 345689999999999999999999988
Q ss_pred ceEEEEEEEE
Q psy11143 124 SAESVAMIRI 133 (940)
Q Consensus 124 ~~~~~~~L~V 133 (940)
.....+.|.|
T Consensus 81 ~~~~~~~l~V 90 (90)
T PF07679_consen 81 EATASVNLTV 90 (90)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEC
Confidence 8888777765
No 38
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.33 E-value=1.1e-11 Score=113.03 Aligned_cols=91 Identities=29% Similarity=0.626 Sum_probs=74.4
Q ss_pred CCeEEeCC--CcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCC-CCeEEEeeceEEEEcccccCCCeEEEEEEEeC
Q psy11143 45 PPIFIQRP--VSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSD-DHVTYEHDGFVLVLNGVRESDAGVYNCVAQNS 121 (940)
Q Consensus 45 pP~~~~~p--~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~-~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~ 121 (940)
||.+...+ ....+.+|+++.|.|.+.|.|.|.|.|+|+|..+... .+..+...++.|.|.+++.+|+|.|+|.|.|.
T Consensus 1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 80 (95)
T cd05730 1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENK 80 (95)
T ss_pred CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcC
Confidence 34444433 3457899999999999999999999999999988755 33444456667899999999999999999999
Q ss_pred CCceEEEEEEEEec
Q psy11143 122 EGSAESVAMIRING 135 (940)
Q Consensus 122 ~g~~~~~~~L~V~~ 135 (940)
.|.....+.|.|..
T Consensus 81 ~G~~~~~~~L~V~~ 94 (95)
T cd05730 81 AGEQEAEIHLKVFA 94 (95)
T ss_pred CCeEEEEEEEEEEe
Confidence 99988888888753
No 39
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.33 E-value=1.2e-11 Score=111.36 Aligned_cols=78 Identities=26% Similarity=0.431 Sum_probs=67.6
Q ss_pred CCeEEEEEeecCcCCCeEEEEeCCeeeccC-CcEEEee-------eceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy11143 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVED-RNHKIHR-------TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT 408 (940)
Q Consensus 337 G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~-~~~~i~~-------~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~ 408 (940)
|+.++|.|.+.|.|.|.++|+|++..+... .++.+.. .++|.|.++..+|+|.|+|.|.|.+|..+..+.|.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 789999999999999999999999887543 3555432 25799999999999999999999999999999999
Q ss_pred EecCCC
Q psy11143 409 VTGENS 414 (940)
Q Consensus 409 V~~~~~ 414 (940)
|+.+|.
T Consensus 81 V~~~P~ 86 (88)
T cd05735 81 VQEPPD 86 (88)
T ss_pred EeCCCC
Confidence 998764
No 40
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.32 E-value=7.6e-12 Score=108.59 Aligned_cols=74 Identities=31% Similarity=0.546 Sum_probs=65.2
Q ss_pred cCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEE
Q psy11143 243 TGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317 (940)
Q Consensus 243 ~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V 317 (940)
+|+.+.|.|.+.|.|.|.|+|+|++..+....+..+..++ +|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~-~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSG-TLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCC-eEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 5899999999999999999999999998876665554444 5999999999999999999999999988887764
No 41
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.32 E-value=6.2e-12 Score=109.45 Aligned_cols=70 Identities=26% Similarity=0.507 Sum_probs=61.2
Q ss_pred EEEEEeecCcCCCeEEEEeCCeeeccC-CcEEEeeec----eEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy11143 340 VEIPCKPDGEPLPRISWSKDEAEFVED-RNHKIHRTG----SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409 (940)
Q Consensus 340 vtL~C~v~g~P~p~i~W~k~g~~i~~~-~~~~i~~~~----sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 409 (940)
|+|.|.+.|.|.|.|.|+|++..+..+ .++.+...+ +|.|.++..+|+|.|+|.|.|..|+.+.++.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 579999999999999999999988653 456664433 6999999999999999999999999999999875
No 42
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.31 E-value=1.2e-11 Score=112.12 Aligned_cols=82 Identities=22% Similarity=0.431 Sum_probs=70.6
Q ss_pred cCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEee----eceEEEecCCCCCCeEEEEEEEeCCeeEEE
Q psy11143 328 KPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR----TGSLRLYNIGPQDSGLYRCTASNLLGEDVA 403 (940)
Q Consensus 328 ~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~----~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~ 403 (940)
.|..+.+.+|++++|.|.+.|.|.|.+.|+|++..+....++.+.. ..+|.|.++..+|+|.|+|.|.|..|....
T Consensus 7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 86 (92)
T cd05737 7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETV 86 (92)
T ss_pred CCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceE
Confidence 3445678999999999999999999999999999887666655532 237999999999999999999999999998
Q ss_pred EEEEEE
Q psy11143 404 EGYLTV 409 (940)
Q Consensus 404 s~~L~V 409 (940)
.+.|.|
T Consensus 87 ~~~v~v 92 (92)
T cd05737 87 DVTVSV 92 (92)
T ss_pred EEEEeC
Confidence 887764
No 43
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.31 E-value=1.9e-11 Score=109.79 Aligned_cols=87 Identities=28% Similarity=0.548 Sum_probs=73.9
Q ss_pred CCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCc
Q psy11143 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 124 (940)
Q Consensus 45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~ 124 (940)
|+.+...|....+.+|+.+.|.|.+.|.|.|.++|+|++..+......+ ..+..|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~--~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~ 78 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS--MSGAVLKIPNIQFEDEGTYECEAENIKGK 78 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE--EeCCEEEECCCCcccCEEEEEEEEECCCc
Confidence 4667778889999999999999999999999999999988765443322 34456899999999999999999999999
Q ss_pred eEEEEEEEE
Q psy11143 125 AESVAMIRI 133 (940)
Q Consensus 125 ~~~~~~L~V 133 (940)
....+.|.|
T Consensus 79 ~~~~~~l~V 87 (88)
T cd04968 79 DTHQGRIYV 87 (88)
T ss_pred EEEEEEEEE
Confidence 888888776
No 44
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.31 E-value=1.9e-11 Score=110.90 Aligned_cols=83 Identities=28% Similarity=0.499 Sum_probs=70.6
Q ss_pred CCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEee---ceEEEEcccccCCCeEEEEEEEeCCCceEE
Q psy11143 51 RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD---GFVLVLNGVRESDAGVYNCVAQNSEGSAES 127 (940)
Q Consensus 51 ~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~---gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~ 127 (940)
-|..+++.+|+++.|.|.+.|.|.|+|.|+|++..+....+.++... ...|.|.+++.+|+|.|+|.|.|..|....
T Consensus 7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 86 (92)
T cd05737 7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETV 86 (92)
T ss_pred CCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceE
Confidence 35667899999999999999999999999999999977666665422 346899999999999999999999998888
Q ss_pred EEEEEE
Q psy11143 128 VAMIRI 133 (940)
Q Consensus 128 ~~~L~V 133 (940)
...|.|
T Consensus 87 ~~~v~v 92 (92)
T cd05737 87 DVTVSV 92 (92)
T ss_pred EEEEeC
Confidence 766653
No 45
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.31 E-value=1.5e-11 Score=112.30 Aligned_cols=84 Identities=26% Similarity=0.461 Sum_probs=69.2
Q ss_pred EEcCCceeecCCCeEEEEEeecCcCC-CeEEEEe-CCeeecc-CCcEEEeee----ceEEEecCCCCCCeEEEEEEEeCC
Q psy11143 326 VVKPFDMRAPAGSSVEIPCKPDGEPL-PRISWSK-DEAEFVE-DRNHKIHRT----GSLRLYNIGPQDSGLYRCTASNLL 398 (940)
Q Consensus 326 ~~~p~~~~v~~G~~vtL~C~v~g~P~-p~i~W~k-~g~~i~~-~~~~~i~~~----~sL~I~~v~~~D~G~YtC~A~N~~ 398 (940)
.+.|.+..+..|++++|.|.+.|.|. |.|+|++ ++..+.. +.++.+..+ ++|.|.++..+|+|.|+|.|+|..
T Consensus 4 ~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~ 83 (96)
T cd05865 4 DIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNED 83 (96)
T ss_pred EEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCC
Confidence 34566678899999999999999995 6999998 7766654 345544332 589999999999999999999997
Q ss_pred -eeEEEEEEEEE
Q psy11143 399 -GEDVAEGYLTV 409 (940)
Q Consensus 399 -G~~~~s~~L~V 409 (940)
|..++++.|.|
T Consensus 84 ~g~~~~s~~l~v 95 (96)
T cd05865 84 EGESEATVNVKI 95 (96)
T ss_pred CCcEEEEEEEEE
Confidence 89999998876
No 46
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.31 E-value=1.4e-11 Score=112.88 Aligned_cols=88 Identities=27% Similarity=0.539 Sum_probs=72.1
Q ss_pred CCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccC-----CcEEEee---eceEEEecCCCCCCeEEEEE
Q psy11143 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED-----RNHKIHR---TGSLRLYNIGPQDSGLYRCT 393 (940)
Q Consensus 322 ~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~-----~~~~i~~---~~sL~I~~v~~~D~G~YtC~ 393 (940)
.|.|...+....+..|+.++|.|.+.|.|.|.|+|++++..+... .++.+.. .++|.|.+++.+|+|.|+|.
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT 81 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence 577777776666667899999999999999999999988766432 2333322 25899999999999999999
Q ss_pred EEeCCeeEEEEEEEEE
Q psy11143 394 ASNLLGEDVAEGYLTV 409 (940)
Q Consensus 394 A~N~~G~~~~s~~L~V 409 (940)
|.|..|..+.++.|.|
T Consensus 82 A~N~~G~~~~~~~l~v 97 (97)
T cd05869 82 ASNTIGQDSQSMYLEV 97 (97)
T ss_pred EecCCCCeeEEEEEEC
Confidence 9999999999998875
No 47
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.30 E-value=1e-11 Score=107.52 Aligned_cols=73 Identities=26% Similarity=0.552 Sum_probs=66.2
Q ss_pred CCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEE
Q psy11143 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317 (940)
Q Consensus 244 G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V 317 (940)
|+.+.|.|.+.|.|.|.|+|+|++..+..+.++.+..++. |.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~-L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGS-LEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCE-EEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 6889999999999999999999999888777877766665 999999999999999999999999999888764
No 48
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.30 E-value=1.8e-11 Score=109.55 Aligned_cols=79 Identities=27% Similarity=0.524 Sum_probs=68.6
Q ss_pred ceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccC-CcEEEee---eceEEEecCCCCCCeEEEEEEEeCCeeEEEEEE
Q psy11143 331 DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED-RNHKIHR---TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY 406 (940)
Q Consensus 331 ~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~-~~~~i~~---~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~ 406 (940)
.+.+..|+.+.|.|.+.|.|.|.+.|+|++..+... .++.+.. .++|.|.++..+|+|.|+|.|.|..|...+++.
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~ 83 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF 83 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence 356789999999999999999999999999988653 3555543 357999999999999999999999999998888
Q ss_pred EEE
Q psy11143 407 LTV 409 (940)
Q Consensus 407 L~V 409 (940)
|.|
T Consensus 84 l~V 86 (86)
T cd05894 84 VKV 86 (86)
T ss_pred EEC
Confidence 865
No 49
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.30 E-value=1.6e-11 Score=107.10 Aligned_cols=72 Identities=29% Similarity=0.608 Sum_probs=63.5
Q ss_pred CCeEEEEEeecCcCCCeEEEEeCCeeeccCC---cEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy11143 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDR---NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409 (940)
Q Consensus 337 G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~---~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 409 (940)
|++++|.|.+.|.|.|.|+|+|+|..+.... ++. ...++|.|.+++.+|+|.|+|.|.|..|...+++.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRH-VSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEE-eeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 6889999999999999999999999876432 333 35678999999999999999999999999999999987
No 50
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.30 E-value=6.9e-12 Score=107.31 Aligned_cols=68 Identities=35% Similarity=0.714 Sum_probs=63.0
Q ss_pred EEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEE
Q psy11143 340 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYL 407 (940)
Q Consensus 340 vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L 407 (940)
|.|.|.+.|.|.|.|+|+|++..+....++.+..+++|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 57999999999999999999998887778888778899999999999999999999999999988876
No 51
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.30 E-value=2e-11 Score=112.11 Aligned_cols=87 Identities=26% Similarity=0.590 Sum_probs=71.0
Q ss_pred CCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeC--Ceeecc-----CCcEEEee---eceEEEecCCCCCCeEEE
Q psy11143 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EAEFVE-----DRNHKIHR---TGSLRLYNIGPQDSGLYR 391 (940)
Q Consensus 322 ~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~--g~~i~~-----~~~~~i~~---~~sL~I~~v~~~D~G~Yt 391 (940)
+|.+.. +.+..+.+|++++|.|.+.|.|.|.|.|+|+ +..+.. +.++.+.. .++|.|.+++.+|+|.|+
T Consensus 2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~ 80 (98)
T cd05870 2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYD 80 (98)
T ss_pred CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEE
Confidence 566654 6678999999999999999999999999994 444321 23555532 358999999999999999
Q ss_pred EEEEeCCeeEEEEEEEEE
Q psy11143 392 CTASNLLGEDVAEGYLTV 409 (940)
Q Consensus 392 C~A~N~~G~~~~s~~L~V 409 (940)
|.|.|.+|....++.|.|
T Consensus 81 C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 81 CEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEeccCCcceeEEEEeC
Confidence 999999999999988865
No 52
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.30 E-value=2.1e-11 Score=111.68 Aligned_cols=88 Identities=34% Similarity=0.637 Sum_probs=69.8
Q ss_pred CCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccC-----CcEEEeeeceEEEe-----cCCCCCCeEEE
Q psy11143 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED-----RNHKIHRTGSLRLY-----NIGPQDSGLYR 391 (940)
Q Consensus 322 ~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~-----~~~~i~~~~sL~I~-----~v~~~D~G~Yt 391 (940)
||.|...|.+..+.+|++++|.|.+.|.|.|.|.|+|+|..+... .+.....++.+.+. .+..+|+|.|+
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~ 80 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV 80 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence 588888899999999999999999999999999999999887651 22223334443322 23689999999
Q ss_pred EEEEeCCee-EEEEEEEEE
Q psy11143 392 CTASNLLGE-DVAEGYLTV 409 (940)
Q Consensus 392 C~A~N~~G~-~~~s~~L~V 409 (940)
|.|.|..|. .+..+.|.|
T Consensus 81 C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 81 CVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEccccceecceEEEEe
Confidence 999999998 666777776
No 53
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.29 E-value=1.5e-11 Score=111.06 Aligned_cols=83 Identities=25% Similarity=0.431 Sum_probs=69.8
Q ss_pred EcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEE---eeeceEEEecCCCCCCeEEEEEEEeCCeeEEE
Q psy11143 327 VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI---HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA 403 (940)
Q Consensus 327 ~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i---~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~ 403 (940)
..|.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+........ ...++|.|.++..+|.|.|+|.|.|..|...+
T Consensus 5 ~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~ 84 (90)
T cd04972 5 DGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANV 84 (90)
T ss_pred cCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeE
Confidence 345566789999999999999999999999999988765443222 22458999999999999999999999999999
Q ss_pred EEEEEE
Q psy11143 404 EGYLTV 409 (940)
Q Consensus 404 s~~L~V 409 (940)
++.|.|
T Consensus 85 ~~~L~v 90 (90)
T cd04972 85 SVQVTV 90 (90)
T ss_pred EEEEeC
Confidence 988865
No 54
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.29 E-value=1.7e-11 Score=107.05 Aligned_cols=73 Identities=23% Similarity=0.485 Sum_probs=62.8
Q ss_pred CCeEEEEEeecCcCCCeEEEEeCCeeeccCC--cEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy11143 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDR--NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409 (940)
Q Consensus 337 G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~--~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 409 (940)
|+.++|.|.+.|.|.|+|+|+|+|.++.... .......+.|.|.+++.+|+|.|+|.|.|..|...++++|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 6889999999999999999999999885332 222234458999999999999999999999999999999987
No 55
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.29 E-value=1.8e-11 Score=110.57 Aligned_cols=78 Identities=29% Similarity=0.601 Sum_probs=68.3
Q ss_pred CCeEEEEEeecCcCCCeEEEEeCCeee--------ccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy11143 337 GSSVEIPCKPDGEPLPRISWSKDEAEF--------VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT 408 (940)
Q Consensus 337 G~~vtL~C~v~g~P~p~i~W~k~g~~i--------~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~ 408 (940)
|++++|.|.+.|.|.|.+.|+|++..+ ....++.+..+++|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLE 80 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEE
Confidence 689999999999999999999988643 234566766678999999999999999999999999999999999
Q ss_pred EecCCC
Q psy11143 409 VTGENS 414 (940)
Q Consensus 409 V~~~~~ 414 (940)
|.+...
T Consensus 81 V~~~~~ 86 (90)
T cd05726 81 VTDVIA 86 (90)
T ss_pred Eeeccc
Confidence 998643
No 56
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.28 E-value=4.9e-11 Score=116.95 Aligned_cols=116 Identities=19% Similarity=0.336 Sum_probs=88.6
Q ss_pred cEEEECCCCCCCCeEEEEEEEcCCceEEEEEEEEEeCCCeEEeCCCcEEEecCCeEEEEEEeecc-CC-CeEEEEECCEe
Q psy11143 8 TELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGH-PL-PQMTWFHDGNS 85 (940)
Q Consensus 8 ~tL~I~~v~~sDsG~Y~C~a~n~~g~~~~~v~l~V~~pP~~~~~p~~~~V~eGesv~L~C~v~g~-P~-p~V~W~kdg~~ 85 (940)
.+|+|.+++.+|+|.|+|.+.+..+.....+.|.|..+|.+...+......+|+.++|.|.+.|. |. +.|+|+++|..
T Consensus 1 asL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~ 80 (139)
T cd05771 1 ASLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG 80 (139)
T ss_pred CeEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence 37999999999999999999998888888899999999999888877666689999999999984 54 48999999864
Q ss_pred ecC----CCC-----eEEEeec-----eEEEEcccccCCCeEEEEEEEeCCC
Q psy11143 86 LDS----DDH-----VTYEHDG-----FVLVLNGVRESDAGVYNCVAQNSEG 123 (940)
Q Consensus 86 I~~----~~~-----~~~~~~g-----s~L~I~~v~~~DsG~YtC~a~n~~g 123 (940)
... ... .+...++ +.|.|......+.+.|+|.+.+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l 132 (139)
T cd05771 81 DSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL 132 (139)
T ss_pred CccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence 211 011 1112233 2356665555667799999987644
No 57
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.28 E-value=2.5e-11 Score=112.05 Aligned_cols=80 Identities=24% Similarity=0.262 Sum_probs=69.3
Q ss_pred ceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEe---------eeceEEEecCCCCCCeEEEEEEEeCCeeE
Q psy11143 331 DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH---------RTGSLRLYNIGPQDSGLYRCTASNLLGED 401 (940)
Q Consensus 331 ~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~---------~~~sL~I~~v~~~D~G~YtC~A~N~~G~~ 401 (940)
...+..|+.+.|.|.+.|+|.|.+.|+|+|.++..+.+.... ..++|.|.++..+|+|.|+|.|.|..|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 457888999999999999999999999999998765543221 13579999999999999999999999999
Q ss_pred EEEEEEEEe
Q psy11143 402 VAEGYLTVT 410 (940)
Q Consensus 402 ~~s~~L~V~ 410 (940)
+.++.|.|.
T Consensus 92 ~~t~~l~V~ 100 (101)
T cd05859 92 SYTFALQIQ 100 (101)
T ss_pred EEEEEEEEE
Confidence 999999885
No 58
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.28 E-value=2.1e-11 Score=108.88 Aligned_cols=84 Identities=27% Similarity=0.554 Sum_probs=71.8
Q ss_pred EEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEE
Q psy11143 48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES 127 (940)
Q Consensus 48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~ 127 (940)
|...|.+..+.+|+.+.|.|.+.|.|.|.+.|+|+|..+....+.. ..+..|.|.+++.+|+|.|+|.|.|..|....
T Consensus 2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~--~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~ 79 (85)
T cd05728 2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIE--VEAGDLRITKLSLSDSGMYQCVAENKHGTIYA 79 (85)
T ss_pred ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEE--EeCCEEEEeeCCHHHCEEEEEEEECCCCeEEE
Confidence 4567888999999999999999999999999999999987554443 34456799999999999999999999999888
Q ss_pred EEEEEE
Q psy11143 128 VAMIRI 133 (940)
Q Consensus 128 ~~~L~V 133 (940)
++.|.|
T Consensus 80 ~~~l~V 85 (85)
T cd05728 80 SAELAV 85 (85)
T ss_pred EEEEEC
Confidence 777654
No 59
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.28 E-value=3.5e-11 Score=108.64 Aligned_cols=85 Identities=27% Similarity=0.481 Sum_probs=70.0
Q ss_pred EeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEE--eeceEEEEcccccCCCeEEEEEEEeCCCceE
Q psy11143 49 IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE--HDGFVLVLNGVRESDAGVYNCVAQNSEGSAE 126 (940)
Q Consensus 49 ~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~--~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~ 126 (940)
...|....+.+|+.+.|.|.+.|+|.|.|.|+++|..+......... .....|.|.++..+|.|.|+|.|.|..|...
T Consensus 4 v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~ 83 (90)
T cd04972 4 VDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQAN 83 (90)
T ss_pred ccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCcee
Confidence 44566777999999999999999999999999999988654332222 2345689999999999999999999999988
Q ss_pred EEEEEEE
Q psy11143 127 SVAMIRI 133 (940)
Q Consensus 127 ~~~~L~V 133 (940)
..+.|.|
T Consensus 84 ~~~~L~v 90 (90)
T cd04972 84 VSVQVTV 90 (90)
T ss_pred EEEEEeC
Confidence 8777654
No 60
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.27 E-value=4.6e-11 Score=106.98 Aligned_cols=80 Identities=23% Similarity=0.483 Sum_probs=67.6
Q ss_pred cEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCC-CCeEEE--eeceEEEEcccccCCCeEEEEEEEeCCCceEEEEE
Q psy11143 54 STTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSD-DHVTYE--HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAM 130 (940)
Q Consensus 54 ~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~-~~~~~~--~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~ 130 (940)
.+.+.+|+.+.|.|.+.|.|.|.+.|+|++.++... .++.+. ...+.|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~ 83 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF 83 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence 567899999999999999999999999999998653 344444 23467899999999999999999999999887776
Q ss_pred EEE
Q psy11143 131 IRI 133 (940)
Q Consensus 131 L~V 133 (940)
|.|
T Consensus 84 l~V 86 (86)
T cd05894 84 VKV 86 (86)
T ss_pred EEC
Confidence 654
No 61
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.27 E-value=6.3e-11 Score=107.96 Aligned_cols=86 Identities=27% Similarity=0.487 Sum_probs=68.4
Q ss_pred CeEEeCCCcEEEecC---CeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccc-cCCCeEEEEEEEeC
Q psy11143 46 PIFIQRPVSTTYSTG---STSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVR-ESDAGVYNCVAQNS 121 (940)
Q Consensus 46 P~~~~~p~~~~V~eG---esv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~-~~DsG~YtC~a~n~ 121 (940)
|.|..+|.++.+.+| +.++|.|.+.|+|.|+|+|+++|..+......++...+..|.|.++. .+|+|.|+|.|+|.
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~ 81 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINR 81 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcC
Confidence 678888899888776 57999999999999999999999998654444444334456887765 69999999999999
Q ss_pred CCceEE-EEEE
Q psy11143 122 EGSAES-VAMI 131 (940)
Q Consensus 122 ~g~~~~-~~~L 131 (940)
.|...+ .+.|
T Consensus 82 ~G~~~s~~a~l 92 (94)
T cd05850 82 CGTVVSREANL 92 (94)
T ss_pred cCcEEEEEEEE
Confidence 998776 4443
No 62
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.26 E-value=2.5e-11 Score=105.64 Aligned_cols=73 Identities=30% Similarity=0.607 Sum_probs=64.0
Q ss_pred CCeEEEEEeecCcCCCeEEEEeCCeeeccCCc--EEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy11143 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRN--HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409 (940)
Q Consensus 337 G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~--~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 409 (940)
|++++|.|.+.|.|.|.|.|+++|..+..... ......+.|.|.+++.+|+|.|+|.|.|..|...+++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 78999999999999999999999998865432 23344678999999999999999999999999999999987
No 63
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.26 E-value=1.6e-11 Score=105.74 Aligned_cols=71 Identities=28% Similarity=0.535 Sum_probs=60.9
Q ss_pred EEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy11143 340 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410 (940)
Q Consensus 340 vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~ 410 (940)
+.|.|.+.|.|.|.|.|+|++..+..+........++|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~Ve 71 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTVE 71 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEEC
Confidence 47999999999999999999987765433333456799999999999999999999999999999888773
No 64
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.26 E-value=3.3e-11 Score=107.62 Aligned_cols=76 Identities=24% Similarity=0.444 Sum_probs=64.2
Q ss_pred CeEEEEEeecCcCCC--eEEEEeCCeeeccC---CcEEE----eeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy11143 338 SSVEIPCKPDGEPLP--RISWSKDEAEFVED---RNHKI----HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT 408 (940)
Q Consensus 338 ~~vtL~C~v~g~P~p--~i~W~k~g~~i~~~---~~~~i----~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~ 408 (940)
++++|.|.+.|.|.| .|.|++++..+... .++.. ...++|.|.+++.+|+|.|+|.|.|..|..++++.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 478999999999998 68999999887542 23221 1357899999999999999999999999999999999
Q ss_pred EecCC
Q psy11143 409 VTGEN 413 (940)
Q Consensus 409 V~~~~ 413 (940)
|.++|
T Consensus 81 V~~~P 85 (85)
T cd05854 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 99864
No 65
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.26 E-value=5.4e-11 Score=108.42 Aligned_cols=82 Identities=28% Similarity=0.622 Sum_probs=66.6
Q ss_pred CeEEeCCCcEEEe---cCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccc-cCCCeEEEEEEEeC
Q psy11143 46 PIFIQRPVSTTYS---TGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVR-ESDAGVYNCVAQNS 121 (940)
Q Consensus 46 P~~~~~p~~~~V~---eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~-~~DsG~YtC~a~n~ 121 (940)
|.|+.+|.++.+. +|+.++|.|.+.|.|.|+|+|+|+|..+......++...+..|.|.++. .+|+|.|+|.|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~ 81 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNS 81 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcC
Confidence 6778888887665 4789999999999999999999999998755444554333456888874 69999999999999
Q ss_pred CCceEE
Q psy11143 122 EGSAES 127 (940)
Q Consensus 122 ~g~~~~ 127 (940)
.|...+
T Consensus 82 ~G~~~S 87 (94)
T cd05848 82 IGSILS 87 (94)
T ss_pred CCeEEe
Confidence 998765
No 66
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.26 E-value=4.2e-11 Score=104.51 Aligned_cols=74 Identities=34% Similarity=0.634 Sum_probs=62.5
Q ss_pred CCeEEEEEEeeccCCCeEEEEECCEeecCCCC-eEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEE
Q psy11143 60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH-VTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133 (940)
Q Consensus 60 Gesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~-~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V 133 (940)
|++++|.|.+.|.|.|+|+|+|+|..+..... .++......|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 78999999999999999999999998865332 233334456799999999999999999999999888888776
No 67
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.26 E-value=2.7e-11 Score=105.53 Aligned_cols=70 Identities=24% Similarity=0.433 Sum_probs=60.4
Q ss_pred EEEEEeecCcCCCeEEEEeCCeeeccC-CcEEEeeec----eEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy11143 340 VEIPCKPDGEPLPRISWSKDEAEFVED-RNHKIHRTG----SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409 (940)
Q Consensus 340 vtL~C~v~g~P~p~i~W~k~g~~i~~~-~~~~i~~~~----sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 409 (940)
++|.|.+.|.|.|.|.|+|++..+..+ .++.+...+ +|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 579999999999999999999988743 455554332 6999999999999999999999999999998875
No 68
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.26 E-value=5e-11 Score=108.93 Aligned_cols=86 Identities=24% Similarity=0.537 Sum_probs=67.9
Q ss_pred EEeCCCcEEEecCCeEEEEEEeeccCC-CeEEEEE-CCEeecC-CCCeEEEee---ceEEEEcccccCCCeEEEEEEEeC
Q psy11143 48 FIQRPVSTTYSTGSTSRITCLVEGHPL-PQMTWFH-DGNSLDS-DDHVTYEHD---GFVLVLNGVRESDAGVYNCVAQNS 121 (940)
Q Consensus 48 ~~~~p~~~~V~eGesv~L~C~v~g~P~-p~V~W~k-dg~~I~~-~~~~~~~~~---gs~L~I~~v~~~DsG~YtC~a~n~ 121 (940)
+.+.|....+.+|++++|.|.+.|.|. |.|+|++ ++..+.. ..++.+..+ .+.|.|.+++.+|+|.|+|.|.|.
T Consensus 3 ~~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~ 82 (96)
T cd05865 3 VDIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNE 82 (96)
T ss_pred EEEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcC
Confidence 345677788999999999999999985 7999998 7776654 323333222 356899999999999999999999
Q ss_pred C-CceEEEEEEEE
Q psy11143 122 E-GSAESVAMIRI 133 (940)
Q Consensus 122 ~-g~~~~~~~L~V 133 (940)
. |..+.++.|.|
T Consensus 83 ~~g~~~~s~~l~v 95 (96)
T cd05865 83 DEGESEATVNVKI 95 (96)
T ss_pred CCCcEEEEEEEEE
Confidence 6 77777777765
No 69
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.25 E-value=6.3e-11 Score=107.69 Aligned_cols=85 Identities=26% Similarity=0.496 Sum_probs=67.3
Q ss_pred CCeEEEcCCceeecCC---CeEEEEEeecCcCCCeEEEEeCCeeecc-CCcEEEeeeceEEEecCC-CCCCeEEEEEEEe
Q psy11143 322 APRLVVKPFDMRAPAG---SSVEIPCKPDGEPLPRISWSKDEAEFVE-DRNHKIHRTGSLRLYNIG-PQDSGLYRCTASN 396 (940)
Q Consensus 322 ~P~i~~~p~~~~v~~G---~~vtL~C~v~g~P~p~i~W~k~g~~i~~-~~~~~i~~~~sL~I~~v~-~~D~G~YtC~A~N 396 (940)
+|.|...|.++.+.++ ..+.|.|.+.|.|.|.|+|+|++..+.. ..++. ..++.|.|.++. .+|+|.|+|.|+|
T Consensus 1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~-~~~g~L~I~~~~~~~D~G~Y~C~A~N 79 (93)
T cd05849 1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYS-MVGGNLVINNPDKYKDAGRYVCIVSN 79 (93)
T ss_pred CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEE-EECCEEEECcCCcCCCCEEEEEEEEe
Confidence 3677777777665544 4899999999999999999999988753 33443 356899999985 6899999999999
Q ss_pred CCeeEEE-EEEE
Q psy11143 397 LLGEDVA-EGYL 407 (940)
Q Consensus 397 ~~G~~~~-s~~L 407 (940)
..|...+ .+.|
T Consensus 80 ~~G~~~s~~a~l 91 (93)
T cd05849 80 IYGKVRSREATL 91 (93)
T ss_pred CcceEEEccEEE
Confidence 9998755 4444
No 70
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.25 E-value=3.8e-11 Score=104.85 Aligned_cols=74 Identities=24% Similarity=0.573 Sum_probs=62.8
Q ss_pred CCeEEEEEEeeccCCCeEEEEECCEeecCCCC-eEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEE
Q psy11143 60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH-VTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133 (940)
Q Consensus 60 Gesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~-~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V 133 (940)
|+.++|.|.+.|.|.|+|+|+|+|.++..... .....++..|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 78999999999999999999999999864322 222345557799999999999999999999999999888876
No 71
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.24 E-value=3.2e-11 Score=107.23 Aligned_cols=76 Identities=20% Similarity=0.327 Sum_probs=64.4
Q ss_pred CeEEEEEeecCc--CCCeEEEEeCCeeec--c-CCcEEE----eeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy11143 338 SSVEIPCKPDGE--PLPRISWSKDEAEFV--E-DRNHKI----HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT 408 (940)
Q Consensus 338 ~~vtL~C~v~g~--P~p~i~W~k~g~~i~--~-~~~~~i----~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~ 408 (940)
+++.|.|.+.+. +.+.|.|+|+|..|. . ..++.. ...+.|.|.+++..|+|.|+|.|+|..++.++++.|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 468999999874 467999999999986 2 234444 2356899999999999999999999999999999999
Q ss_pred EecCC
Q psy11143 409 VTGEN 413 (940)
Q Consensus 409 V~~~~ 413 (940)
|++||
T Consensus 81 V~~pP 85 (85)
T cd05853 81 VRGPP 85 (85)
T ss_pred EecCC
Confidence 99875
No 72
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.24 E-value=6.1e-11 Score=108.05 Aligned_cols=81 Identities=28% Similarity=0.546 Sum_probs=65.5
Q ss_pred CeEEEcCCceeec---CCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEE-EeeeceEEEecCC-CCCCeEEEEEEEeC
Q psy11143 323 PRLVVKPFDMRAP---AGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHK-IHRTGSLRLYNIG-PQDSGLYRCTASNL 397 (940)
Q Consensus 323 P~i~~~p~~~~v~---~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~-i~~~~sL~I~~v~-~~D~G~YtC~A~N~ 397 (940)
|.|+..|.++.+. +|+.++|.|.+.|.|.|.|+|+|+|..+....... ...+++|.|.++. .+|+|.|+|.|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~ 81 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNS 81 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcC
Confidence 6777778776554 47899999999999999999999999886443222 2346789999985 69999999999999
Q ss_pred CeeEEE
Q psy11143 398 LGEDVA 403 (940)
Q Consensus 398 ~G~~~~ 403 (940)
+|...+
T Consensus 82 ~G~~~S 87 (94)
T cd05848 82 IGSILS 87 (94)
T ss_pred CCeEEe
Confidence 998754
No 73
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.24 E-value=3.6e-11 Score=104.62 Aligned_cols=71 Identities=25% Similarity=0.542 Sum_probs=60.5
Q ss_pred EEEEEEEeeeCCCeEEEEECCeecCC-CCceEEeec--C-eEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEE
Q psy11143 247 SRITCLVEGHPLPQMTWFHDGNSLDS-DDHVTYEHD--G-FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317 (940)
Q Consensus 247 v~L~C~v~G~P~p~ItW~k~g~~l~~-~~~~~~~~~--g-~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V 317 (940)
+.|.|.+.|.|.|.|+|+|++..+.. ..++.+..+ + .+|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 57999999999999999999999874 355555433 2 26999999999999999999999999999888765
No 74
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.24 E-value=5.3e-11 Score=102.46 Aligned_cols=71 Identities=28% Similarity=0.573 Sum_probs=62.7
Q ss_pred eEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEE
Q psy11143 246 TSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317 (940)
Q Consensus 246 ~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V 317 (940)
++.|.|.+.|.|.|.++|+|++..+....++.+..++. |.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~-l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHN-LQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCC-EEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 47899999999999999999999988777777666665 889999999999999999999999988887764
No 75
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.24 E-value=7.2e-11 Score=108.98 Aligned_cols=81 Identities=22% Similarity=0.291 Sum_probs=68.3
Q ss_pred cEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEE--------eeceEEEEcccccCCCeEEEEEEEeCCCce
Q psy11143 54 STTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE--------HDGFVLVLNGVRESDAGVYNCVAQNSEGSA 125 (940)
Q Consensus 54 ~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~--------~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~ 125 (940)
..++..|+.+.|.|.+.|+|+|.|.|+|||.+|..+...... ...+.|.|.+++.+|+|.|+|.|.|..|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 567889999999999999999999999999998755432221 113568999999999999999999999998
Q ss_pred EEEEEEEEe
Q psy11143 126 ESVAMIRIN 134 (940)
Q Consensus 126 ~~~~~L~V~ 134 (940)
+.++.|.|.
T Consensus 92 ~~t~~l~V~ 100 (101)
T cd05859 92 SYTFALQIQ 100 (101)
T ss_pred EEEEEEEEE
Confidence 888888775
No 76
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.23 E-value=3.3e-11 Score=102.24 Aligned_cols=66 Identities=23% Similarity=0.315 Sum_probs=57.4
Q ss_pred EEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy11143 340 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410 (940)
Q Consensus 340 vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~ 410 (940)
++|.|.+.|+|.|.++|+|+|..+... ...+.|.|.++..+|+|.|+|.|+|..|..+++..|+|.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~-----~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK-----HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc-----CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 579999999999999999999988532 134589999999999999999999999988888777764
No 77
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.23 E-value=4.5e-11 Score=109.13 Aligned_cols=87 Identities=29% Similarity=0.577 Sum_probs=71.1
Q ss_pred CCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccC-----CcEEEee---eceEEEecCCCCCCeEEEEE
Q psy11143 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED-----RNHKIHR---TGSLRLYNIGPQDSGLYRCT 393 (940)
Q Consensus 322 ~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~-----~~~~i~~---~~sL~I~~v~~~D~G~YtC~ 393 (940)
+|.|. .+.+..+.+|++++|.|.+.|.|.|.+.|++++..+... .++.+.. .++|.|.+++.+|+|.|+|.
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 80 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE 80 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence 56665 355678899999999999999999999999998655432 2333322 35899999999999999999
Q ss_pred EEeCCeeEEEEEEEEE
Q psy11143 394 ASNLLGEDVAEGYLTV 409 (940)
Q Consensus 394 A~N~~G~~~~s~~L~V 409 (940)
|.|..|..+.++.|.|
T Consensus 81 a~N~~G~~~~s~~l~v 96 (96)
T cd05732 81 ASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEeCCCCcEEEEEEeC
Confidence 9999999999888865
No 78
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.23 E-value=8.1e-11 Score=106.62 Aligned_cols=83 Identities=27% Similarity=0.524 Sum_probs=69.1
Q ss_pred EEcCCceeecCCCeEEEEEeecCcCCCeEEEEeC-CeeeccCCcEEEeeec---eEEEecCCCCCCeEEEEEEEeCCeeE
Q psy11143 326 VVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD-EAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGED 401 (940)
Q Consensus 326 ~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~-g~~i~~~~~~~i~~~~---sL~I~~v~~~D~G~YtC~A~N~~G~~ 401 (940)
.+.+.+..+.+|+++.|.|.+.|.|. .+.|+++ +..+..+.++.+..++ +|.|.++..+|+|.|+|.|+|..|..
T Consensus 4 ~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 82 (92)
T cd05866 4 SISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQT 82 (92)
T ss_pred EEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcE
Confidence 44566788999999999999999998 9999984 6677666677776555 89999999999999999999999986
Q ss_pred -EEEEEEEE
Q psy11143 402 -VAEGYLTV 409 (940)
Q Consensus 402 -~~s~~L~V 409 (940)
.+++.|.|
T Consensus 83 ~~~~i~l~~ 91 (92)
T cd05866 83 QEATVVLEI 91 (92)
T ss_pred EEEEEEEEE
Confidence 55666654
No 79
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.23 E-value=5.8e-11 Score=102.97 Aligned_cols=71 Identities=32% Similarity=0.433 Sum_probs=62.6
Q ss_pred eEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEee---eceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy11143 339 SVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR---TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409 (940)
Q Consensus 339 ~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~---~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 409 (940)
++.|.|.+.|.|.|.+.|+|+|..+..+.++.+.. .++|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 47899999999999999999999987666666543 457999999999999999999999999999988865
No 80
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.22 E-value=4.2e-11 Score=106.87 Aligned_cols=76 Identities=24% Similarity=0.413 Sum_probs=64.0
Q ss_pred CeEEEEEeecCcCCC--eEEEEeCCeeeccCC---cE----EEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy11143 338 SSVEIPCKPDGEPLP--RISWSKDEAEFVEDR---NH----KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT 408 (940)
Q Consensus 338 ~~vtL~C~v~g~P~p--~i~W~k~g~~i~~~~---~~----~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~ 408 (940)
++++|.|.+.|.|.| .+.|+++|..+.... .+ .....++|.|.+++.+|+|.|+|.|.|..|..++++.|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 468999999999988 679999998875332 11 112467899999999999999999999999999999999
Q ss_pred EecCC
Q psy11143 409 VTGEN 413 (940)
Q Consensus 409 V~~~~ 413 (940)
|.++|
T Consensus 81 V~~pP 85 (85)
T cd04970 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 99874
No 81
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.22 E-value=7.5e-11 Score=105.04 Aligned_cols=78 Identities=29% Similarity=0.537 Sum_probs=66.4
Q ss_pred eeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcE---EE-eeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEE
Q psy11143 332 MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH---KI-HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYL 407 (940)
Q Consensus 332 ~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~---~i-~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L 407 (940)
..+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+.+. .. ....+|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 83 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence 45788999999999999999999999999988655432 22 124479999999999999999999999999999988
Q ss_pred EE
Q psy11143 408 TV 409 (940)
Q Consensus 408 ~V 409 (940)
.|
T Consensus 84 ~v 85 (85)
T cd05857 84 DV 85 (85)
T ss_pred EC
Confidence 75
No 82
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.22 E-value=9e-11 Score=107.39 Aligned_cols=89 Identities=33% Similarity=0.632 Sum_probs=68.3
Q ss_pred CCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCC----CC-eEEEeeceE--EEE--cccccCCCeEEE
Q psy11143 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSD----DH-VTYEHDGFV--LVL--NGVRESDAGVYN 115 (940)
Q Consensus 45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~----~~-~~~~~~gs~--L~I--~~v~~~DsG~Yt 115 (940)
||.+...|.+..+.+|+.+.|.|.+.|.|.|.|.|+|+|..+... .. .....++.+ +.+ ..++.+|+|.|+
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~ 80 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV 80 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence 578889999999999999999999999999999999999988651 11 122233333 222 234789999999
Q ss_pred EEEEeCCCceE-EEEEEEE
Q psy11143 116 CVAQNSEGSAE-SVAMIRI 133 (940)
Q Consensus 116 C~a~n~~g~~~-~~~~L~V 133 (940)
|.|.|..|... ..+.|.|
T Consensus 81 C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 81 CVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEccccceecceEEEEe
Confidence 99999999844 4666665
No 83
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.22 E-value=9.8e-11 Score=109.74 Aligned_cols=93 Identities=27% Similarity=0.398 Sum_probs=72.8
Q ss_pred cCCeEEEcCCceee----cCCCeEEEEEeecCcCCCeEEEEeCCeeeccC-CcEEEee-------eceEEEecCC-CCCC
Q psy11143 321 RAPRLVVKPFDMRA----PAGSSVEIPCKPDGEPLPRISWSKDEAEFVED-RNHKIHR-------TGSLRLYNIG-PQDS 387 (940)
Q Consensus 321 ~~P~i~~~p~~~~v----~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~-~~~~i~~-------~~sL~I~~v~-~~D~ 387 (940)
.+|.|...|....+ ..|..++|.|.+.|.|.|.++|+|+|..+... .++.+.. .++|.|.++. .+|.
T Consensus 3 ~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~ 82 (109)
T cd05773 3 FAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDY 82 (109)
T ss_pred cccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCC
Confidence 46666665542221 35689999999999999999999999988633 3443221 3579999997 5899
Q ss_pred eEEEEEEEeCCeeEEEEEEEEEecCC
Q psy11143 388 GLYRCTASNLLGEDVAEGYLTVTGEN 413 (940)
Q Consensus 388 G~YtC~A~N~~G~~~~s~~L~V~~~~ 413 (940)
|.|+|.|.|.+|....++.|.|..+|
T Consensus 83 G~Y~C~A~N~~G~~~~~i~L~~~~~p 108 (109)
T cd05773 83 ALFTCTAHNSLGEDSLDIQLVSTSRP 108 (109)
T ss_pred EEEEEEEEeCCccCcEEEEEEecCCC
Confidence 99999999999999999999998764
No 84
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.22 E-value=6.8e-11 Score=102.49 Aligned_cols=73 Identities=29% Similarity=0.534 Sum_probs=63.9
Q ss_pred CCeEEEEEeecCcCCCeEEEEe-CCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy11143 337 GSSVEIPCKPDGEPLPRISWSK-DEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409 (940)
Q Consensus 337 G~~vtL~C~v~g~P~p~i~W~k-~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 409 (940)
|+.+.|.|.+.|.|.|.+.|++ ++..+....+..+...++|.|..+..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 6889999999999999999997 566666556666667789999999999999999999999999988888765
No 85
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.22 E-value=1.5e-10 Score=105.57 Aligned_cols=84 Identities=26% Similarity=0.471 Sum_probs=67.2
Q ss_pred CeEEEcCCceeecCC---CeEEEEEeecCcCCCeEEEEeCCeeeccC--CcEEEeeeceEEEecCC-CCCCeEEEEEEEe
Q psy11143 323 PRLVVKPFDMRAPAG---SSVEIPCKPDGEPLPRISWSKDEAEFVED--RNHKIHRTGSLRLYNIG-PQDSGLYRCTASN 396 (940)
Q Consensus 323 P~i~~~p~~~~v~~G---~~vtL~C~v~g~P~p~i~W~k~g~~i~~~--~~~~i~~~~sL~I~~v~-~~D~G~YtC~A~N 396 (940)
|.|...|.++.+.+| ++++|.|.+.|+|.|.|+|+++|..+... .++.+ .+++|.|.++. ..|+|.|+|.|+|
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~-~~g~L~I~~~~~~~D~G~Y~C~A~N 80 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTL-VAGNLVINNPQKARDAGSYQCLAIN 80 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEE-ECCeEEEccCCccCcCEEEEEEEEc
Confidence 667777887776665 58999999999999999999999988633 34433 46789998865 5999999999999
Q ss_pred CCeeEEE-EEEE
Q psy11143 397 LLGEDVA-EGYL 407 (940)
Q Consensus 397 ~~G~~~~-s~~L 407 (940)
..|...+ .+.|
T Consensus 81 ~~G~~~s~~a~l 92 (94)
T cd05850 81 RCGTVVSREANL 92 (94)
T ss_pred CcCcEEEEEEEE
Confidence 9998765 4444
No 86
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.22 E-value=1.2e-10 Score=105.86 Aligned_cols=86 Identities=29% Similarity=0.560 Sum_probs=67.5
Q ss_pred CCeEEeCCCcEEEecCC---eEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccc-cCCCeEEEEEEEe
Q psy11143 45 PPIFIQRPVSTTYSTGS---TSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVR-ESDAGVYNCVAQN 120 (940)
Q Consensus 45 pP~~~~~p~~~~V~eGe---sv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~-~~DsG~YtC~a~n 120 (940)
+|.|..+|.++.+.++. .+.|.|.+.|+|.|+|+|+|++..+..... ++...+..|.|.++. .+|+|.|+|.|.|
T Consensus 1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~-~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N 79 (93)
T cd05849 1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTND-RYSMVGGNLVINNPDKYKDAGRYVCIVSN 79 (93)
T ss_pred CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCC-eEEEECCEEEECcCCcCCCCEEEEEEEEe
Confidence 47788888888776654 899999999999999999999998854322 333334567898885 6999999999999
Q ss_pred CCCceEE-EEEE
Q psy11143 121 SEGSAES-VAMI 131 (940)
Q Consensus 121 ~~g~~~~-~~~L 131 (940)
..|...+ .+.|
T Consensus 80 ~~G~~~s~~a~l 91 (93)
T cd05849 80 IYGKVRSREATL 91 (93)
T ss_pred CcceEEEccEEE
Confidence 9998766 4433
No 87
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.21 E-value=4.1e-11 Score=104.02 Aligned_cols=71 Identities=32% Similarity=0.526 Sum_probs=61.9
Q ss_pred EEEEEeecCcCCCeEEEEeCCeeec--cCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeE-EEEEEEEEe
Q psy11143 340 VEIPCKPDGEPLPRISWSKDEAEFV--EDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED-VAEGYLTVT 410 (940)
Q Consensus 340 vtL~C~v~g~P~p~i~W~k~g~~i~--~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~-~~s~~L~V~ 410 (940)
++|.|.+.|.|.|.|+|+|++..+. ...++....+++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|+
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v~ 74 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYVR 74 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEEC
Confidence 4799999999999999999998876 4556766677899999999999999999999999985 668888774
No 88
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.21 E-value=9.6e-11 Score=104.36 Aligned_cols=79 Identities=24% Similarity=0.594 Sum_probs=65.7
Q ss_pred EEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCe---EEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEE
Q psy11143 55 TTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMI 131 (940)
Q Consensus 55 ~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~---~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L 131 (940)
..|.+|+.+.|.|.+.|.|.|.|.|+|+|..+...... ........|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 83 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence 45789999999999999999999999999998754432 222334568999999999999999999999998888777
Q ss_pred EE
Q psy11143 132 RI 133 (940)
Q Consensus 132 ~V 133 (940)
.|
T Consensus 84 ~v 85 (85)
T cd05857 84 DV 85 (85)
T ss_pred EC
Confidence 64
No 89
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.21 E-value=6.5e-11 Score=102.40 Aligned_cols=73 Identities=29% Similarity=0.508 Sum_probs=65.6
Q ss_pred CCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEE
Q psy11143 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317 (940)
Q Consensus 244 G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V 317 (940)
|+.+.|.|.+.|.|.|.++|+|++..+....++.+..++. |.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~-L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGS-LEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCe-EEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 6889999999999999999999999998777777766665 999999999999999999999999988887764
No 90
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.21 E-value=5.9e-11 Score=103.30 Aligned_cols=71 Identities=34% Similarity=0.671 Sum_probs=59.3
Q ss_pred EEEEEEeeccCCCeEEEEECCEeecCC-CCeEEEee--c-eEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEE
Q psy11143 63 SRITCLVEGHPLPQMTWFHDGNSLDSD-DHVTYEHD--G-FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133 (940)
Q Consensus 63 v~L~C~v~g~P~p~V~W~kdg~~I~~~-~~~~~~~~--g-s~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V 133 (940)
|+|.|.+.|.|.|+|+|+|++..+... .++.+..+ + ..|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 579999999999999999999998643 34444333 2 25899999999999999999999999998888764
No 91
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.21 E-value=1.4e-10 Score=105.09 Aligned_cols=85 Identities=24% Similarity=0.518 Sum_probs=68.1
Q ss_pred EEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEE-CCEeecCCCCeEEEeec--eEEEEcccccCCCeEEEEEEEeCCCc
Q psy11143 48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEHDG--FVLVLNGVRESDAGVYNCVAQNSEGS 124 (940)
Q Consensus 48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~k-dg~~I~~~~~~~~~~~g--s~L~I~~v~~~DsG~YtC~a~n~~g~ 124 (940)
+...|.+..+.+|+++.|.|.+.|.|. .+.|++ ++..+....+..+..++ ..|.|.++..+|+|.|+|.|+|..|.
T Consensus 3 ~~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 81 (92)
T cd05866 3 VSISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQ 81 (92)
T ss_pred EEEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCc
Confidence 345667888999999999999999998 999998 57777666666655444 46899999999999999999999988
Q ss_pred eEE-EEEEEE
Q psy11143 125 AES-VAMIRI 133 (940)
Q Consensus 125 ~~~-~~~L~V 133 (940)
... +..|.+
T Consensus 82 ~~~~~i~l~~ 91 (92)
T cd05866 82 TQEATVVLEI 91 (92)
T ss_pred EEEEEEEEEE
Confidence 643 444443
No 92
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.21 E-value=5.4e-11 Score=101.70 Aligned_cols=69 Identities=35% Similarity=0.686 Sum_probs=60.6
Q ss_pred EEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy11143 340 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409 (940)
Q Consensus 340 vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 409 (940)
++|.|.+.|.|.|.+.|+|++..+.. .++.+...++|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPK-GRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCC-CcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 57999999999999999999877643 4555567779999999999999999999999999999888865
No 93
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.21 E-value=8.8e-11 Score=104.73 Aligned_cols=82 Identities=32% Similarity=0.631 Sum_probs=68.5
Q ss_pred cCCceeecCCCeEEEEEee-cCcCCCeEEEEeCCeeecc-CCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEE-EE
Q psy11143 328 KPFDMRAPAGSSVEIPCKP-DGEPLPRISWSKDEAEFVE-DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV-AE 404 (940)
Q Consensus 328 ~p~~~~v~~G~~vtL~C~v-~g~P~p~i~W~k~g~~i~~-~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~-~s 404 (940)
.|.+..+.+|+++.|.|.+ .|.|.|.+.|+|++..+.. ..++.+...++|.|.+++.+|+|.|+|.|.|..|... ..
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~ 81 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAA 81 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeee
Confidence 3556788899999999998 7999999999999988765 4456665678999999999999999999999999764 45
Q ss_pred EEEEE
Q psy11143 405 GYLTV 409 (940)
Q Consensus 405 ~~L~V 409 (940)
+.|.|
T Consensus 82 ~~l~V 86 (86)
T cd05724 82 ARLSV 86 (86)
T ss_pred EEEEC
Confidence 55543
No 94
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.21 E-value=6.5e-11 Score=100.45 Aligned_cols=66 Identities=26% Similarity=0.492 Sum_probs=57.0
Q ss_pred EEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEEe
Q psy11143 63 SRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 134 (940)
Q Consensus 63 v~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V~ 134 (940)
+.|.|.+.|+|.|.++|+|||..+... ..+..|.|.++..+|+|.|+|.|+|..|..+.+..++|.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 579999999999999999999998632 234578999999999999999999999988887777664
No 95
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.20 E-value=1.1e-10 Score=105.97 Aligned_cols=81 Identities=21% Similarity=0.415 Sum_probs=69.2
Q ss_pred CCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEee----eceEEEecCCCCCCeEEEEEEEeCCeeEEEE
Q psy11143 329 PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR----TGSLRLYNIGPQDSGLYRCTASNLLGEDVAE 404 (940)
Q Consensus 329 p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~----~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s 404 (940)
|..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+..+.++.+.. .++|.|.++..+|+|.|+|.|.|.+|....+
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 87 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVD 87 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeE
Confidence 456788999999999999999999999999998887665554321 2379999999999999999999999999988
Q ss_pred EEEEE
Q psy11143 405 GYLTV 409 (940)
Q Consensus 405 ~~L~V 409 (940)
+.|.|
T Consensus 88 ~~v~~ 92 (92)
T cd05891 88 VTVSV 92 (92)
T ss_pred EEEEC
Confidence 87764
No 96
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.20 E-value=9.8e-11 Score=106.83 Aligned_cols=85 Identities=33% Similarity=0.573 Sum_probs=68.8
Q ss_pred EEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCC--cEEEeeeceEEEecC-----CCCCCeEEEEEEEeC
Q psy11143 325 LVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDR--NHKIHRTGSLRLYNI-----GPQDSGLYRCTASNL 397 (940)
Q Consensus 325 i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~--~~~i~~~~sL~I~~v-----~~~D~G~YtC~A~N~ 397 (940)
|...|.+..+.+|+++.|.|.+.|.|.|.|+|+|+|..+.... +..+..+++|.|.++ ..+|.|.|+|.|.|.
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~ 81 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQND 81 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECC
Confidence 3456777888899999999999999999999999999886543 345555677888777 588999999999999
Q ss_pred -CeeE-EEEEEEEE
Q psy11143 398 -LGED-VAEGYLTV 409 (940)
Q Consensus 398 -~G~~-~~s~~L~V 409 (940)
.|.. +..+.|.|
T Consensus 82 ~~G~~~s~~~~l~v 95 (95)
T cd05722 82 SLGSIVSRTARLTV 95 (95)
T ss_pred ccCcEEEeeeEEeC
Confidence 9977 44666654
No 97
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.20 E-value=1e-10 Score=105.82 Aligned_cols=79 Identities=22% Similarity=0.396 Sum_probs=65.9
Q ss_pred CCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEe-eeceEEEecCCCCCCeEEEEEEEeCCeeEEE-EEE
Q psy11143 329 PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH-RTGSLRLYNIGPQDSGLYRCTASNLLGEDVA-EGY 406 (940)
Q Consensus 329 p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~-~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~-s~~ 406 (940)
+.++.+.+|++++|.|.+.|. .|.|.|+|++..+... +..+. ..++|.|.+++.+|+|.|+|.|.|..|...+ .+.
T Consensus 10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~ 87 (91)
T cd05740 10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYI 87 (91)
T ss_pred cCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEE
Confidence 446788999999999999999 9999999999887644 34443 3458999999999999999999999997554 666
Q ss_pred EEE
Q psy11143 407 LTV 409 (940)
Q Consensus 407 L~V 409 (940)
|.|
T Consensus 88 L~V 90 (91)
T cd05740 88 LNV 90 (91)
T ss_pred EEe
Confidence 766
No 98
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.20 E-value=1.2e-10 Score=105.35 Aligned_cols=81 Identities=23% Similarity=0.411 Sum_probs=67.6
Q ss_pred CCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEE-EE
Q psy11143 51 RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES-VA 129 (940)
Q Consensus 51 ~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~-~~ 129 (940)
.+..+.+.+|++++|.|.+.|. .|.|.|+|++..+... +..+..++..|.|.+++.+|+|.|+|.|.|..|...+ .+
T Consensus 9 ~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~ 86 (91)
T cd05740 9 SVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPY 86 (91)
T ss_pred ccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeE
Confidence 3456789999999999999999 9999999999988643 4555555667899999999999999999999998766 55
Q ss_pred EEEE
Q psy11143 130 MIRI 133 (940)
Q Consensus 130 ~L~V 133 (940)
.|.|
T Consensus 87 ~L~V 90 (91)
T cd05740 87 ILNV 90 (91)
T ss_pred EEEe
Confidence 5555
No 99
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.20 E-value=1.8e-10 Score=105.57 Aligned_cols=89 Identities=24% Similarity=0.445 Sum_probs=70.2
Q ss_pred CCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCC-----CeEEEe--eceEEEEcccccCCCeEEEEE
Q psy11143 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD-----HVTYEH--DGFVLVLNGVRESDAGVYNCV 117 (940)
Q Consensus 45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~-----~~~~~~--~gs~L~I~~v~~~DsG~YtC~ 117 (940)
.|.|...+....+..|+.++|.|.+.|.|.|.|+|++++..+.... ++.+.. ....|.|.+++.+|+|.|+|.
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT 81 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence 4667666777767779999999999999999999999988765321 122221 124689999999999999999
Q ss_pred EEeCCCceEEEEEEEE
Q psy11143 118 AQNSEGSAESVAMIRI 133 (940)
Q Consensus 118 a~n~~g~~~~~~~L~V 133 (940)
|.|..|....++.|.|
T Consensus 82 A~N~~G~~~~~~~l~v 97 (97)
T cd05869 82 ASNTIGQDSQSMYLEV 97 (97)
T ss_pred EecCCCCeeEEEEEEC
Confidence 9999999888777654
No 100
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.20 E-value=8.6e-11 Score=103.10 Aligned_cols=73 Identities=26% Similarity=0.449 Sum_probs=63.0
Q ss_pred CCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEee---eceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy11143 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR---TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409 (940)
Q Consensus 337 G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~---~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 409 (940)
|++++|.|.+.|.|.|.|+|++++..+....++.+.. .++|.|.++..+|+|.|+|.|.|..|...+.+.+.+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~ 76 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL 76 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence 6899999999999999999999998887666665543 358999999999999999999999999887766554
No 101
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.19 E-value=1.9e-10 Score=103.41 Aligned_cols=79 Identities=16% Similarity=0.330 Sum_probs=65.5
Q ss_pred CCeEEEEEEeeccCCCeEEEEECCEeecCCC-CeEEEe----e--ceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEE
Q psy11143 60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDD-HVTYEH----D--GFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR 132 (940)
Q Consensus 60 Gesv~L~C~v~g~P~p~V~W~kdg~~I~~~~-~~~~~~----~--gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~ 132 (940)
|+.++|.|.+.|.|++.++|+|++..+.... ++.+.. . .+.|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 7899999999999999999999999886432 333321 1 14589999999999999999999999999999999
Q ss_pred EecccC
Q psy11143 133 INGHRA 138 (940)
Q Consensus 133 V~~~~~ 138 (940)
|...+.
T Consensus 81 V~~~P~ 86 (88)
T cd05735 81 VQEPPD 86 (88)
T ss_pred EeCCCC
Confidence 986543
No 102
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.19 E-value=1.6e-10 Score=104.81 Aligned_cols=83 Identities=27% Similarity=0.539 Sum_probs=69.3
Q ss_pred CCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEE-eec--eEEEEcccccCCCeEEEEEEEeCCCceEE
Q psy11143 51 RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE-HDG--FVLVLNGVRESDAGVYNCVAQNSEGSAES 127 (940)
Q Consensus 51 ~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~-~~g--s~L~I~~v~~~DsG~YtC~a~n~~g~~~~ 127 (940)
.|..+++.+|+++.|.|.+.|.|.|.+.|+|++..+....+.... ..+ ..|.|.+++.+|+|.|+|.|.|..|....
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 86 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETV 86 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceee
Confidence 456788999999999999999999999999999988765554433 122 35899999999999999999999999888
Q ss_pred EEEEEE
Q psy11143 128 VAMIRI 133 (940)
Q Consensus 128 ~~~L~V 133 (940)
++.|.|
T Consensus 87 ~~~v~~ 92 (92)
T cd05891 87 DVTVSV 92 (92)
T ss_pred EEEEEC
Confidence 776654
No 103
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.19 E-value=5.9e-11 Score=101.78 Aligned_cols=71 Identities=37% Similarity=0.576 Sum_probs=59.7
Q ss_pred EEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy11143 340 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410 (940)
Q Consensus 340 vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~ 410 (940)
++|.|.+.|.|.|.+.|+|++..+...........++|.|.+++.+|+|.|+|.|.|..|..+.++.|.|+
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 71 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTVE 71 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEEC
Confidence 57999999999999999999987654432222335689999999999999999999999999999988874
No 104
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.19 E-value=1.2e-10 Score=101.26 Aligned_cols=74 Identities=32% Similarity=0.582 Sum_probs=63.1
Q ss_pred CCeEEEEEEeeccCCCeEEEEECCEeecCCCCe-EEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEE
Q psy11143 60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV-TYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133 (940)
Q Consensus 60 Gesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~-~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V 133 (940)
|+.++|.|.+.|.|.|+|.|+++|..+...... .....+..|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 789999999999999999999999988654332 33344567899999999999999999999999888887776
No 105
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.19 E-value=1e-10 Score=100.09 Aligned_cols=69 Identities=32% Similarity=0.551 Sum_probs=58.0
Q ss_pred CCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy11143 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT 408 (940)
Q Consensus 337 G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~ 408 (940)
|++++|.|.+.|.|.|.|+|+|++..+....+... ....|.|.++. |+|.|+|.|.|..|...+++.|+
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~-~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l~ 69 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV-GRNVLELTNIY--ESANYTCVAISSLGMIEATAQVT 69 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceec-CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEEC
Confidence 67899999999999999999999988765544433 34579999874 79999999999999999888763
No 106
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.18 E-value=1.8e-10 Score=105.77 Aligned_cols=88 Identities=25% Similarity=0.528 Sum_probs=68.1
Q ss_pred CCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEEC--CEeecC-----CCCeEEEe--eceEEEEcccccCCCeEEE
Q psy11143 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD--GNSLDS-----DDHVTYEH--DGFVLVLNGVRESDAGVYN 115 (940)
Q Consensus 45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd--g~~I~~-----~~~~~~~~--~gs~L~I~~v~~~DsG~Yt 115 (940)
+|.+. .+.+.++.+|+.++|.|.+.|.|.|.|.|+|+ +..+.. ..++.+.. ....|.|.+++.+|+|.|+
T Consensus 2 ~p~i~-~~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~ 80 (98)
T cd05870 2 QPHII-QLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYD 80 (98)
T ss_pred CCEEE-eeccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEE
Confidence 46654 46789999999999999999999999999994 444432 12233322 2346899999999999999
Q ss_pred EEEEeCCCceEEEEEEEE
Q psy11143 116 CVAQNSEGSAESVAMIRI 133 (940)
Q Consensus 116 C~a~n~~g~~~~~~~L~V 133 (940)
|.|.|..|....++.|.|
T Consensus 81 C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 81 CEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEeccCCcceeEEEEeC
Confidence 999999998887766653
No 107
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.18 E-value=9.6e-11 Score=100.87 Aligned_cols=70 Identities=24% Similarity=0.363 Sum_probs=60.8
Q ss_pred EEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy11143 340 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410 (940)
Q Consensus 340 vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~ 410 (940)
|.|.|.+.|.|.|.+.|+|+|..+..+.++. ...++|.|.++..+|+|.|+|.|.|..|..+.+..+.|.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~-~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTK-KSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEE-cCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 5799999999999999999999987665443 345789999999999999999999999998888877764
No 108
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.17 E-value=1.5e-10 Score=101.92 Aligned_cols=79 Identities=19% Similarity=0.437 Sum_probs=65.4
Q ss_pred CCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEE
Q psy11143 52 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMI 131 (940)
Q Consensus 52 p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L 131 (940)
|....+.+|+.+.|.|.+.+. .+.|.|+|+|.+|....+.++. +..|.|.+++.+|+|.|+|.|.|..|.....+.|
T Consensus 1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~--~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v 77 (79)
T cd04973 1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT--GEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSV 77 (79)
T ss_pred CCcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe--CCEEEECCCChhhCEEEEEEEeCCCCcccEEEEE
Confidence 466788999999999999986 5689999999999766555543 4568999999999999999999998887666655
Q ss_pred EE
Q psy11143 132 RI 133 (940)
Q Consensus 132 ~V 133 (940)
+|
T Consensus 78 ~V 79 (79)
T cd04973 78 NV 79 (79)
T ss_pred eC
Confidence 43
No 109
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.17 E-value=2.1e-10 Score=104.66 Aligned_cols=88 Identities=25% Similarity=0.442 Sum_probs=69.3
Q ss_pred CCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCC-----CeEEEe--eceEEEEcccccCCCeEEEEE
Q psy11143 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD-----HVTYEH--DGFVLVLNGVRESDAGVYNCV 117 (940)
Q Consensus 45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~-----~~~~~~--~gs~L~I~~v~~~DsG~YtC~ 117 (940)
+|.+. .+.+..+.+|+.+.|.|.+.|.|.|.|.|++++..+.... +..+.. ....|.|.+++.+|+|.|+|.
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 80 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE 80 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence 46664 4567889999999999999999999999999987665321 222221 234689999999999999999
Q ss_pred EEeCCCceEEEEEEEE
Q psy11143 118 AQNSEGSAESVAMIRI 133 (940)
Q Consensus 118 a~n~~g~~~~~~~L~V 133 (940)
|.|..|....++.|.|
T Consensus 81 a~N~~G~~~~s~~l~v 96 (96)
T cd05732 81 ASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEeCCCCcEEEEEEeC
Confidence 9999999877776653
No 110
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.17 E-value=2e-10 Score=102.43 Aligned_cols=80 Identities=35% Similarity=0.637 Sum_probs=65.3
Q ss_pred CCCcEEEecCCeEEEEEEe-eccCCCeEEEEECCEeecCC-CCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEE-
Q psy11143 51 RPVSTTYSTGSTSRITCLV-EGHPLPQMTWFHDGNSLDSD-DHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES- 127 (940)
Q Consensus 51 ~p~~~~V~eGesv~L~C~v-~g~P~p~V~W~kdg~~I~~~-~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~- 127 (940)
+|....+.+|+++.|.|.+ .|.|.|.|.|+|+|..+... .+..... +..|.|.+++.+|+|.|+|.|.|..|...+
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~-~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~ 80 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD-DGNLLIAEARKSDEGTYKCVATNMVGERESA 80 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc-CCEEEEeECCcccCEEEEEEEEeccCceeee
Confidence 5678889999999999998 78999999999999988753 2333333 346799999999999999999999998765
Q ss_pred EEEE
Q psy11143 128 VAMI 131 (940)
Q Consensus 128 ~~~L 131 (940)
.+.|
T Consensus 81 ~~~l 84 (86)
T cd05724 81 AARL 84 (86)
T ss_pred eEEE
Confidence 4443
No 111
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.17 E-value=1.4e-10 Score=102.01 Aligned_cols=79 Identities=25% Similarity=0.490 Sum_probs=67.6
Q ss_pred CCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy11143 329 PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT 408 (940)
Q Consensus 329 p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~ 408 (940)
|.+..+.+|++++|.|.+.+. .+.|.|+|+|.++..+.++.+. .++|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus 1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~-~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~ 78 (79)
T cd04973 1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT-GEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVN 78 (79)
T ss_pred CCcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe-CCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEe
Confidence 345678899999999999986 5789999999998777666654 46899999999999999999999999988777665
Q ss_pred E
Q psy11143 409 V 409 (940)
Q Consensus 409 V 409 (940)
|
T Consensus 79 V 79 (79)
T cd04973 79 V 79 (79)
T ss_pred C
Confidence 4
No 112
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.17 E-value=1.9e-10 Score=99.63 Aligned_cols=72 Identities=26% Similarity=0.536 Sum_probs=61.3
Q ss_pred eEEEEEEeeccCCCeEEEEECCEeecCCCCeEEE--eeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEE
Q psy11143 62 TSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE--HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133 (940)
Q Consensus 62 sv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~--~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V 133 (940)
++.|.|.+.|.|.|.+.|+|+|..+....+..+. .....|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 4789999999999999999999998666555554 33567899999999999999999999999888777654
No 113
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.16 E-value=1e-10 Score=100.32 Aligned_cols=69 Identities=25% Similarity=0.459 Sum_probs=58.7
Q ss_pred EEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy11143 340 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410 (940)
Q Consensus 340 vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~ 410 (940)
+.|.|.+.|.|.|.+.|+|+|.++....++ .....|.|.++..+|+|.|+|.|.|..|..+...++.+.
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~--~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTF--KRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEE--ccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 468999999999999999999998755332 345589999999999999999999999988877776654
No 114
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.16 E-value=2.4e-10 Score=104.96 Aligned_cols=85 Identities=26% Similarity=0.355 Sum_probs=69.9
Q ss_pred CCeEEEcCCceeecCCCeEEEEEeecCcCCC-eEEEEeCCeeeccC--CcEEEeee-------ceEEEecCCCCC-CeEE
Q psy11143 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVED--RNHKIHRT-------GSLRLYNIGPQD-SGLY 390 (940)
Q Consensus 322 ~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p-~i~W~k~g~~i~~~--~~~~i~~~-------~sL~I~~v~~~D-~G~Y 390 (940)
||.+ ..+....+.+|++++|.|.+.|.|.| .|.|++++..+... .++.+... ++|.|.++..+| .|.|
T Consensus 2 pp~i-~~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y 80 (98)
T cd05758 2 PPII-TSEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY 80 (98)
T ss_pred CCeE-cCCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence 4555 44566778999999999999999999 69999999887643 46666543 379999999955 8999
Q ss_pred EEEEEeCCeeEEEEEEE
Q psy11143 391 RCTASNLLGEDVAEGYL 407 (940)
Q Consensus 391 tC~A~N~~G~~~~s~~L 407 (940)
+|.|.|..|.+...+.|
T Consensus 81 ~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 81 NCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEEcCCCcccEEEEe
Confidence 99999999998888766
No 115
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.16 E-value=1.6e-10 Score=99.46 Aligned_cols=70 Identities=24% Similarity=0.509 Sum_probs=59.7
Q ss_pred EEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEEe
Q psy11143 63 SRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 134 (940)
Q Consensus 63 v~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V~ 134 (940)
+.|.|.+.|.|.|.+.|+|+|..+.... ++...+..|.|.+++.+|+|.|+|.|.|..|..+.+..++|.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~--~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKN--RTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCC--EEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 4799999999999999999999987653 334455678999999999999999999999988887777664
No 116
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.15 E-value=1.5e-10 Score=102.22 Aligned_cols=74 Identities=24% Similarity=0.542 Sum_probs=61.2
Q ss_pred EEeCCCcEEEecCCeEEEEEEeeccCCC-eEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceE
Q psy11143 48 FIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE 126 (940)
Q Consensus 48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p-~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~ 126 (940)
|..+|.++.+.+|+.+.|.|.+.|.|.| +|.|+|+|.++... ....++.|.|..+ .|+|.|+|.|+|..|...
T Consensus 1 f~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~----~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~ 74 (81)
T cd05749 1 FTVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP----PAPSPSVLNVPGL--NETSKFSCEAHNAKGVTT 74 (81)
T ss_pred CcCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC----CCCCCCEEEEccc--cCCeEEEEEEEeccCcEE
Confidence 3457888999999999999999999999 79999999988641 1223456788877 588999999999999776
Q ss_pred E
Q psy11143 127 S 127 (940)
Q Consensus 127 ~ 127 (940)
+
T Consensus 75 s 75 (81)
T cd05749 75 S 75 (81)
T ss_pred e
Confidence 5
No 117
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.15 E-value=1.9e-10 Score=100.11 Aligned_cols=71 Identities=28% Similarity=0.550 Sum_probs=59.6
Q ss_pred EEEEEEEeeeCCCeEEEEECCeecCCC-CceEEeec--C-eEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEE
Q psy11143 247 SRITCLVEGHPLPQMTWFHDGNSLDSD-DHVTYEHD--G-FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317 (940)
Q Consensus 247 v~L~C~v~G~P~p~ItW~k~g~~l~~~-~~~~~~~~--g-~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V 317 (940)
++|.|.+.|.|.|.|+|+|++..+... .++.+... + .+|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 479999999999999999999998743 45554333 2 25999999999999999999999999988887764
No 118
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.15 E-value=1.3e-10 Score=101.77 Aligned_cols=68 Identities=28% Similarity=0.388 Sum_probs=57.5
Q ss_pred EEEEeecCcCCCeEEEEeCCeeeccCCcEEE--------eeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy11143 341 EIPCKPDGEPLPRISWSKDEAEFVEDRNHKI--------HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT 408 (940)
Q Consensus 341 tL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i--------~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~ 408 (940)
.|.|.+.|+|.|+|+|+|+|..+..+.+... ...++|.|.++..+|+|.|+|.|+|..|++.+++.+.
T Consensus 2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 3789999999999999999999976654321 1245899999999999999999999999988887764
No 119
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.14 E-value=3e-10 Score=99.60 Aligned_cols=74 Identities=27% Similarity=0.473 Sum_probs=62.2
Q ss_pred CCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEee--ceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEE
Q psy11143 60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD--GFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133 (940)
Q Consensus 60 Gesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~--gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V 133 (940)
|+++.|.|.+.|.|.|.|.|++++..+....+..+... ...|.|.++..+|+|.|+|.|.|..|.....+.+.+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~ 76 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL 76 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence 78999999999999999999999988876655554422 356899999999999999999999998887665554
No 120
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.14 E-value=3.1e-10 Score=101.36 Aligned_cols=75 Identities=29% Similarity=0.424 Sum_probs=61.6
Q ss_pred CeEEEEEEeeccCCC--eEEEEECCEeecCCC---Ce-EEE--eeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEE
Q psy11143 61 STSRITCLVEGHPLP--QMTWFHDGNSLDSDD---HV-TYE--HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR 132 (940)
Q Consensus 61 esv~L~C~v~g~P~p--~V~W~kdg~~I~~~~---~~-~~~--~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~ 132 (940)
+.++|.|.+.|.|.| +|+|+++|..+.... +. ++. .....|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 468999999999887 689999999886432 22 112 2345689999999999999999999999999999999
Q ss_pred Eec
Q psy11143 133 ING 135 (940)
Q Consensus 133 V~~ 135 (940)
|.+
T Consensus 81 V~~ 83 (85)
T cd05854 81 VRG 83 (85)
T ss_pred EEC
Confidence 976
No 121
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.14 E-value=1.4e-10 Score=99.11 Aligned_cols=68 Identities=31% Similarity=0.627 Sum_probs=60.1
Q ss_pred EEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEE
Q psy11143 247 SRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMI 315 (940)
Q Consensus 247 v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l 315 (940)
|.|.|.+.|.|.|.|+|+|+|..+....++.+..++ .|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~-~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEG-YLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCC-EEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 579999999999999999999999877777665555 49999999999999999999999998877655
No 122
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.13 E-value=2.1e-10 Score=98.72 Aligned_cols=70 Identities=33% Similarity=0.556 Sum_probs=59.0
Q ss_pred EEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEE
Q psy11143 247 SRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317 (940)
Q Consensus 247 v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V 317 (940)
+.|.|.+.|.|.|.+.|+|++..+.... ......+.+|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNR-TKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCc-eeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 4799999999999999999998776543 233344456999999999999999999999999888877776
No 123
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.13 E-value=2.7e-10 Score=99.72 Aligned_cols=71 Identities=30% Similarity=0.620 Sum_probs=57.5
Q ss_pred EEEEEEeeccCCCeEEEEECCEeecCCC-CeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEE
Q psy11143 63 SRITCLVEGHPLPQMTWFHDGNSLDSDD-HVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133 (940)
Q Consensus 63 v~L~C~v~g~P~p~V~W~kdg~~I~~~~-~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V 133 (940)
|+|.|.+.|.|.|.|+|+|+|..+.... ...+......|.|.+++.+|+|.|+|.|.|..|...++..++|
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l 72 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTL 72 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEE
Confidence 5799999999999999999999886543 3344444457899999999999999999999998766444444
No 124
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.13 E-value=1.7e-10 Score=104.29 Aligned_cols=74 Identities=32% Similarity=0.557 Sum_probs=58.5
Q ss_pred CCeEEEEEeecCcCCCeEEEEeCC----eeeccCC--cEEE----------eeeceEEEecCCCCCCeEEEEEEEeCCee
Q psy11143 337 GSSVEIPCKPDGEPLPRISWSKDE----AEFVEDR--NHKI----------HRTGSLRLYNIGPQDSGLYRCTASNLLGE 400 (940)
Q Consensus 337 G~~vtL~C~v~g~P~p~i~W~k~g----~~i~~~~--~~~i----------~~~~sL~I~~v~~~D~G~YtC~A~N~~G~ 400 (940)
|++++|.|.+.|.|.|.|+|+|++ ..+.... .... .....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 678999999999999999999963 3332111 1111 11247999999999999999999999999
Q ss_pred EEEEEEEEEe
Q psy11143 401 DVAEGYLTVT 410 (940)
Q Consensus 401 ~~~s~~L~V~ 410 (940)
..+++.|.|.
T Consensus 81 ~~~sa~L~V~ 90 (90)
T cd04974 81 SHHSAWLTVL 90 (90)
T ss_pred ccCCEEEEeC
Confidence 9999999874
No 125
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.13 E-value=2.4e-10 Score=100.67 Aligned_cols=78 Identities=24% Similarity=0.575 Sum_probs=63.5
Q ss_pred EEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEE
Q psy11143 55 TTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR 132 (940)
Q Consensus 55 ~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~ 132 (940)
..+..|+++.|.|.+.|.|.|.+.|+|++..+..............|.|.+++.+|+|.|+|.|.|..|.......|.
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~ 81 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD 81 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence 446789999999999999999999999999876543333233445689999999999999999999999877666554
No 126
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.13 E-value=2.4e-10 Score=99.34 Aligned_cols=70 Identities=30% Similarity=0.599 Sum_probs=58.2
Q ss_pred EEEEEeecCcCCCeEEEEeCCeeec---cCCcEEEe-eeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy11143 340 VEIPCKPDGEPLPRISWSKDEAEFV---EDRNHKIH-RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409 (940)
Q Consensus 340 vtL~C~v~g~P~p~i~W~k~g~~i~---~~~~~~i~-~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 409 (940)
++|.|.+.|.|.|.|+|+|++.... ...++.+. ..+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 4799999999999999999986422 22344433 3468999999999999999999999999999999987
No 127
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.12 E-value=3.8e-10 Score=102.96 Aligned_cols=84 Identities=32% Similarity=0.574 Sum_probs=66.3
Q ss_pred EEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCC--eEEEeeceEEEEccc-----ccCCCeEEEEEEEe
Q psy11143 48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH--VTYEHDGFVLVLNGV-----RESDAGVYNCVAQN 120 (940)
Q Consensus 48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~--~~~~~~gs~L~I~~v-----~~~DsG~YtC~a~n 120 (940)
|..+|.+..+.+|+++.|.|.+.|.|.|.|+|+|+|..+..... .....++. |.|.++ ..+|.|.|+|.|.|
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~-l~i~~v~~~~~~~~D~G~Y~C~a~N 80 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGS-LLITSVVHSKHNKPDEGFYQCVAQN 80 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCe-EEEeeeeccCCCCCcCEEEEEEEEC
Confidence 56678888999999999999999999999999999999875443 23334444 466666 58999999999999
Q ss_pred C-CCceEE-EEEEE
Q psy11143 121 S-EGSAES-VAMIR 132 (940)
Q Consensus 121 ~-~g~~~~-~~~L~ 132 (940)
. .|...+ .+.|.
T Consensus 81 ~~~G~~~s~~~~l~ 94 (95)
T cd05722 81 DSLGSIVSRTARLT 94 (95)
T ss_pred CccCcEEEeeeEEe
Confidence 9 888754 55444
No 128
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.12 E-value=2.4e-10 Score=97.97 Aligned_cols=69 Identities=25% Similarity=0.442 Sum_probs=58.5
Q ss_pred EEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEe
Q psy11143 247 SRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 318 (940)
Q Consensus 247 v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~ 318 (940)
+.|.|.+.|+|.|.++|+|+|.++....++ . .+..|.|.++..+|+|.|+|.|.|..|..+....+.+.
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~--~-~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTF--K-RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEE--c-cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 468999999999999999999999765432 2 34469999999999999999999999988887776664
No 129
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.12 E-value=6.9e-10 Score=104.02 Aligned_cols=93 Identities=23% Similarity=0.367 Sum_probs=70.6
Q ss_pred eCCCeEEeCCCcEEE-e---cCCeEEEEEEeeccCCCeEEEEECCEeecCCC-CeEEE--e----eceEEEEcccc-cCC
Q psy11143 43 NAPPIFIQRPVSTTY-S---TGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD-HVTYE--H----DGFVLVLNGVR-ESD 110 (940)
Q Consensus 43 ~~pP~~~~~p~~~~V-~---eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~-~~~~~--~----~gs~L~I~~v~-~~D 110 (940)
..+|.|...|....+ . .|..++|.|.+.|.|.+.++|+|+|..+.... +.... . .++.|.|.++. .+|
T Consensus 2 ~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D 81 (109)
T cd05773 2 RFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALD 81 (109)
T ss_pred ccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCC
Confidence 446776666553222 2 46799999999999999999999999986432 22222 1 13568999997 699
Q ss_pred CeEEEEEEEeCCCceEEEEEEEEec
Q psy11143 111 AGVYNCVAQNSEGSAESVAMIRING 135 (940)
Q Consensus 111 sG~YtC~a~n~~g~~~~~~~L~V~~ 135 (940)
.|.|+|.|.|..|.....+.|.+..
T Consensus 82 ~G~Y~C~A~N~~G~~~~~i~L~~~~ 106 (109)
T cd05773 82 YALFTCTAHNSLGEDSLDIQLVSTS 106 (109)
T ss_pred CEEEEEEEEeCCccCcEEEEEEecC
Confidence 9999999999999998888888765
No 130
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.11 E-value=3.9e-10 Score=98.70 Aligned_cols=72 Identities=29% Similarity=0.616 Sum_probs=58.8
Q ss_pred EEEEEEEeeeCCCeEEEEECCeecCCCC-ceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEe
Q psy11143 247 SRITCLVEGHPLPQMTWFHDGNSLDSDD-HVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 318 (940)
Q Consensus 247 v~L~C~v~G~P~p~ItW~k~g~~l~~~~-~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~ 318 (940)
++|.|.+.|.|.|.|+|+|+|.++.... .+.+...+.+|.|.++..+|+|.|+|.|.|..|....+..+.|.
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~ 73 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLS 73 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEE
Confidence 5799999999999999999999986543 34444444569999999999999999999999987655555553
No 131
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.11 E-value=3.4e-10 Score=100.06 Aligned_cols=69 Identities=26% Similarity=0.373 Sum_probs=57.6
Q ss_pred EEEEeecCcCCCeEEEEeCCeeeccCCcEEEe----------eeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy11143 341 EIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH----------RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409 (940)
Q Consensus 341 tL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~----------~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 409 (940)
.|.|.+.|+|.|.|+|+|+|..+..+.+.... ..++|.|.++..+|+|.|+|.|.|.+|..++++.|..
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~~ 80 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAHF 80 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEeee
Confidence 37899999999999999999998766543221 1447999999999999999999999999998877653
No 132
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.11 E-value=2.5e-10 Score=100.82 Aligned_cols=77 Identities=21% Similarity=0.459 Sum_probs=61.5
Q ss_pred EEcCCceeecCCCeEEEEEeecCcCCC-eEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEE-
Q psy11143 326 VVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA- 403 (940)
Q Consensus 326 ~~~p~~~~v~~G~~vtL~C~v~g~P~p-~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~- 403 (940)
...|.++.+.+|+++.|.|.+.|.|.| .|.|+|+|.++... .. ...+.|.|..+ .|+|.|.|.|+|.+|...+
T Consensus 2 ~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~--~~-~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~ 76 (81)
T cd05749 2 TVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--PA-PSPSVLNVPGL--NETSKFSCEAHNAKGVTTSR 76 (81)
T ss_pred cCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC--CC-CCCCEEEEccc--cCCeEEEEEEEeccCcEEee
Confidence 345778899999999999999999999 79999999987541 11 13457999887 4789999999999997664
Q ss_pred EEEE
Q psy11143 404 EGYL 407 (940)
Q Consensus 404 s~~L 407 (940)
.+.|
T Consensus 77 ~a~~ 80 (81)
T cd05749 77 TGTV 80 (81)
T ss_pred eEEe
Confidence 4443
No 133
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.10 E-value=6.1e-10 Score=101.02 Aligned_cols=83 Identities=28% Similarity=0.514 Sum_probs=64.7
Q ss_pred EEcCCceeecCCCeEEEEEeecCcCCCeEEEEe-CCeeeccCCcEEEeee----ceEEEecCCCCCCeEEEEEEEeCCe-
Q psy11143 326 VVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSK-DEAEFVEDRNHKIHRT----GSLRLYNIGPQDSGLYRCTASNLLG- 399 (940)
Q Consensus 326 ~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k-~g~~i~~~~~~~i~~~----~sL~I~~v~~~D~G~YtC~A~N~~G- 399 (940)
.+.|.+..+..|+++.|.|.+.|.|. .+.|++ ++..+....++.+... ++|+|.+++.+|+|.|+|.|.|..|
T Consensus 4 ~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~ 82 (92)
T cd04977 4 DIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGT 82 (92)
T ss_pred EEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCC
Confidence 44566788999999999999999974 999998 5665655444444332 3799999999999999999999965
Q ss_pred eEEEEEEEEE
Q psy11143 400 EDVAEGYLTV 409 (940)
Q Consensus 400 ~~~~s~~L~V 409 (940)
...+++.|.|
T Consensus 83 ~~~~sv~l~~ 92 (92)
T cd04977 83 ESEATVNLKI 92 (92)
T ss_pred cceeEEEEEC
Confidence 4566666654
No 134
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.10 E-value=3.3e-10 Score=102.31 Aligned_cols=73 Identities=33% Similarity=0.532 Sum_probs=58.8
Q ss_pred CCeEEEEEeecCcCCCeEEEEeC----CeeeccCCc--EEEe----------eeceEEEecCCCCCCeEEEEEEEeCCee
Q psy11143 337 GSSVEIPCKPDGEPLPRISWSKD----EAEFVEDRN--HKIH----------RTGSLRLYNIGPQDSGLYRCTASNLLGE 400 (940)
Q Consensus 337 G~~vtL~C~v~g~P~p~i~W~k~----g~~i~~~~~--~~i~----------~~~sL~I~~v~~~D~G~YtC~A~N~~G~ 400 (940)
|++++|.|.+.|.|.|.|+|+|+ +..+..+.. ..+. ..++|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 68899999999999999999984 444432221 1111 1247999999999999999999999999
Q ss_pred EEEEEEEEE
Q psy11143 401 DVAEGYLTV 409 (940)
Q Consensus 401 ~~~s~~L~V 409 (940)
...++.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 999999987
No 135
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.10 E-value=1.1e-09 Score=107.43 Aligned_cols=112 Identities=19% Similarity=0.381 Sum_probs=82.0
Q ss_pred EEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEeecCc-CC-CeEEEEeCCe
Q psy11143 284 VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PL-PRISWSKDEA 361 (940)
Q Consensus 284 sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~-P~-p~i~W~k~g~ 361 (940)
+|+|.+++.+|+|.|+|.+.+..+.....+.|.|. .+|.+...+......+|+.++|.|.+.|. |. +.|.|++++.
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~--~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~ 79 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVS--EPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPP 79 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEe--cCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCC
Confidence 48999999999999999999988887777777775 67888777765555578999999999996 54 3899999985
Q ss_pred eecc-----CC----cE------EEeeeceEEEecCCCCCCeEEEEEEEeC
Q psy11143 362 EFVE-----DR----NH------KIHRTGSLRLYNIGPQDSGLYRCTASNL 397 (940)
Q Consensus 362 ~i~~-----~~----~~------~i~~~~sL~I~~v~~~D~G~YtC~A~N~ 397 (940)
.... .. .. .....+.|.+..-...+...|+|.|.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~ 130 (139)
T cd05771 80 GDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHV 130 (139)
T ss_pred CCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcC
Confidence 4111 11 01 1122335666655555677899999875
No 136
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.10 E-value=8.7e-10 Score=100.04 Aligned_cols=84 Identities=25% Similarity=0.549 Sum_probs=63.6
Q ss_pred EEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEE-CCEeecCCCCeEEEee---ceEEEEcccccCCCeEEEEEEEeCCC
Q psy11143 48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEHD---GFVLVLNGVRESDAGVYNCVAQNSEG 123 (940)
Q Consensus 48 ~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~k-dg~~I~~~~~~~~~~~---gs~L~I~~v~~~DsG~YtC~a~n~~g 123 (940)
+.+.|....+.+|+++.|.|.+.|.|+ .+.|++ ++..+....+...... ...|+|.+++.+|+|.|+|.|.|..|
T Consensus 3 v~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g 81 (92)
T cd04977 3 VDIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKG 81 (92)
T ss_pred EEEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCC
Confidence 345677788999999999999999875 999998 6666654444433322 24689999999999999999999865
Q ss_pred c-eEEEEEEE
Q psy11143 124 S-AESVAMIR 132 (940)
Q Consensus 124 ~-~~~~~~L~ 132 (940)
. .+.++.|.
T Consensus 82 ~~~~~sv~l~ 91 (92)
T cd04977 82 TESEATVNLK 91 (92)
T ss_pred CcceeEEEEE
Confidence 5 34454443
No 137
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.09 E-value=4.2e-10 Score=99.19 Aligned_cols=77 Identities=25% Similarity=0.585 Sum_probs=63.6
Q ss_pred EEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEE
Q psy11143 240 TYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR 316 (940)
Q Consensus 240 ~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~ 316 (940)
....|+.+.|.|.+.|.|.|.++|++++..+.............+|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~ 81 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD 81 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence 45579999999999999999999999999886554433333445699999999999999999999999877766654
No 138
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.08 E-value=5.9e-10 Score=99.16 Aligned_cols=76 Identities=22% Similarity=0.368 Sum_probs=61.8
Q ss_pred CeEEEEEEeec--cCCCeEEEEECCEeecCC-CCeEEEe-----eceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEE
Q psy11143 61 STSRITCLVEG--HPLPQMTWFHDGNSLDSD-DHVTYEH-----DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR 132 (940)
Q Consensus 61 esv~L~C~v~g--~P~p~V~W~kdg~~I~~~-~~~~~~~-----~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~ 132 (940)
+++.|.|.+.+ .+++.|.|+|||+.|... ...++.. ....|+|.+++.+|+|.|+|.|.|..+....++.|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 47899999977 447799999999999632 2223322 345689999999999999999999999999999999
Q ss_pred Eecc
Q psy11143 133 INGH 136 (940)
Q Consensus 133 V~~~ 136 (940)
|.++
T Consensus 81 V~~p 84 (85)
T cd05853 81 VRGP 84 (85)
T ss_pred EecC
Confidence 9864
No 139
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.07 E-value=8.6e-10 Score=94.35 Aligned_cols=68 Identities=31% Similarity=0.650 Sum_probs=56.3
Q ss_pred CCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEE
Q psy11143 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMI 315 (940)
Q Consensus 244 G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l 315 (940)
|++++|.|.+.|.|.|.|+|+|++.++....+... ....|.|.++. |+|.|+|.|.|..|..+.++.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~--~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV--GRNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceec--CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 67899999999999999999999998866544332 33358898874 7899999999999998877665
No 140
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.07 E-value=5.8e-10 Score=96.95 Aligned_cols=71 Identities=32% Similarity=0.659 Sum_probs=58.1
Q ss_pred EEEEEEEeeeCCCeEEEEECCeec-C--CCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEE
Q psy11143 247 SRITCLVEGHPLPQMTWFHDGNSL-D--SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317 (940)
Q Consensus 247 v~L~C~v~G~P~p~ItW~k~g~~l-~--~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V 317 (940)
++|.|.+.|.|.|.|+|+|++... + ...++.+...+..|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 479999999999999999998643 2 2234444445557999999999999999999999999888888776
No 141
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.06 E-value=7.2e-10 Score=100.07 Aligned_cols=75 Identities=28% Similarity=0.557 Sum_probs=63.2
Q ss_pred CCeEEEEEEEeeeCCCeEEEEECCeec--------CCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEE
Q psy11143 244 GSTSRITCLVEGHPLPQMTWFHDGNSL--------DSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMI 315 (940)
Q Consensus 244 G~~v~L~C~v~G~P~p~ItW~k~g~~l--------~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l 315 (940)
|+.+.|.|.+.|.|.|.+.|+|++..+ ....++.+..++ .|+|.+++.+|+|.|+|.|.|..|.....+.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~-~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 79 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTG-DLTITNVQRSDVGYYICQTLNVAGSILTKAYL 79 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCC-eEEEeeCChhhCEEEEEEEEcCCCceEEEEEE
Confidence 788999999999999999999998653 123445554445 49999999999999999999999999999998
Q ss_pred EEee
Q psy11143 316 RING 319 (940)
Q Consensus 316 ~V~~ 319 (940)
.|..
T Consensus 80 ~V~~ 83 (90)
T cd05726 80 EVTD 83 (90)
T ss_pred EEee
Confidence 8864
No 142
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.06 E-value=8.1e-10 Score=95.68 Aligned_cols=73 Identities=25% Similarity=0.571 Sum_probs=60.6
Q ss_pred CCeEEEEEEEeeeCCCeEEEEE-CCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEE
Q psy11143 244 GSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317 (940)
Q Consensus 244 G~~v~L~C~v~G~P~p~ItW~k-~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V 317 (940)
|+.+.|.|.+.|.|.|.+.|++ ++..+....+.....++ +|.|..+..+|.|.|+|.|.|..|..+.++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~-~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNG-TLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCC-EEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 7889999999999999999997 57666655555554455 4999999999999999999999998877766654
No 143
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.06 E-value=4.9e-10 Score=102.06 Aligned_cols=81 Identities=17% Similarity=0.297 Sum_probs=65.9
Q ss_pred CcEEEecCCeEEEEEEeec-----cCCCeEEEEECCEeecC--CCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCce
Q psy11143 53 VSTTYSTGSTSRITCLVEG-----HPLPQMTWFHDGNSLDS--DDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA 125 (940)
Q Consensus 53 ~~~~V~eGesv~L~C~v~g-----~P~p~V~W~kdg~~I~~--~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~ 125 (940)
....+.+|+++.|.|.+.+ .|.+.|.|||++..+.. ....++...+..|.|.++..+|+|.|+|.++|..|..
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~ 86 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCM 86 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccE
Confidence 4566789999999999998 68889999999976532 2234554455678999999999999999999999998
Q ss_pred EEEEEEEE
Q psy11143 126 ESVAMIRI 133 (940)
Q Consensus 126 ~~~~~L~V 133 (940)
+..+.|+|
T Consensus 87 ~~~~~L~v 94 (94)
T cd05756 87 KVSISLTV 94 (94)
T ss_pred EEEEEEEC
Confidence 88776654
No 144
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.06 E-value=8e-10 Score=98.58 Aligned_cols=76 Identities=22% Similarity=0.380 Sum_probs=61.2
Q ss_pred CeEEEEEEeeccCCC--eEEEEECCEeecCCCC---e-EE-E-eeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEE
Q psy11143 61 STSRITCLVEGHPLP--QMTWFHDGNSLDSDDH---V-TY-E-HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR 132 (940)
Q Consensus 61 esv~L~C~v~g~P~p--~V~W~kdg~~I~~~~~---~-~~-~-~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~ 132 (940)
++++|.|.+.|.|.| ++.|+++|..+..... + +. . .....|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 478999999999877 6799999998864321 1 11 1 2345679999999999999999999999998899999
Q ss_pred Eecc
Q psy11143 133 INGH 136 (940)
Q Consensus 133 V~~~ 136 (940)
|.++
T Consensus 81 V~~p 84 (85)
T cd04970 81 VRGP 84 (85)
T ss_pred EECC
Confidence 8763
No 145
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.05 E-value=7.7e-10 Score=96.02 Aligned_cols=70 Identities=34% Similarity=0.666 Sum_probs=57.8
Q ss_pred EEEEEEEeeeCCCeEEEEECCeecC--CCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCc-eeEEEEEE
Q psy11143 247 SRITCLVEGHPLPQMTWFHDGNSLD--SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA-ESVAMIRI 317 (940)
Q Consensus 247 v~L~C~v~G~P~p~ItW~k~g~~l~--~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~-~~s~~l~V 317 (940)
++|.|.+.|.|.|.|+|+|++.++. ...++....++ .|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g-~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSG-ALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCc-EEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 4799999999999999999999887 44455554444 49999999999999999999999985 45666655
No 146
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.05 E-value=6.3e-10 Score=95.05 Aligned_cols=69 Identities=28% Similarity=0.535 Sum_probs=57.3
Q ss_pred EEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEE
Q psy11143 63 SRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133 (940)
Q Consensus 63 v~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V 133 (940)
++|.|.+.|.|.|.+.|+|++..++.. +.... .+..|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKG-RAEIL-DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCC-cEEEe-eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 579999999999999999998877543 33433 4446799999999999999999999999888777654
No 147
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.05 E-value=1.3e-09 Score=98.52 Aligned_cols=82 Identities=29% Similarity=0.613 Sum_probs=64.6
Q ss_pred CeEEeCCCcEEEecC---CeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccc-cCCCeEEEEEEEeC
Q psy11143 46 PIFIQRPVSTTYSTG---STSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVR-ESDAGVYNCVAQNS 121 (940)
Q Consensus 46 P~~~~~p~~~~V~eG---esv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~-~~DsG~YtC~a~n~ 121 (940)
|.|..+|.++.+.+| +.+.|.|.+.|+|.|+|+|+|++..+......++...+..|.|.++. .+|+|.|+|.|+|.
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~ 81 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNI 81 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcC
Confidence 677888888776554 57999999999999999999999988543333444333456888876 59999999999999
Q ss_pred CCceEE
Q psy11143 122 EGSAES 127 (940)
Q Consensus 122 ~g~~~~ 127 (940)
.|...+
T Consensus 82 ~G~~~S 87 (91)
T cd04967 82 VGTVLS 87 (91)
T ss_pred CCEEEe
Confidence 997655
No 148
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.05 E-value=7.1e-10 Score=97.65 Aligned_cols=73 Identities=37% Similarity=0.617 Sum_probs=59.3
Q ss_pred CCeEEEEEeecCcCCCeEEEEeCCe---e--eccC---CcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy11143 337 GSSVEIPCKPDGEPLPRISWSKDEA---E--FVED---RNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT 408 (940)
Q Consensus 337 G~~vtL~C~v~g~P~p~i~W~k~g~---~--i~~~---~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~ 408 (940)
|++++|.|.+.|.|.|.+.|+|++. . +... .++.....++|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS 80 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence 7899999999999999999999732 1 1111 123334457899999999999999999999999999998887
Q ss_pred E
Q psy11143 409 V 409 (940)
Q Consensus 409 V 409 (940)
|
T Consensus 81 v 81 (81)
T cd05765 81 V 81 (81)
T ss_pred C
Confidence 5
No 149
>PLN02283 alpha-dioxygenase
Probab=99.05 E-value=4.1e-11 Score=142.61 Aligned_cols=40 Identities=30% Similarity=0.431 Sum_probs=35.7
Q ss_pred cccccccCCcccCCCCCcccccchhhhcccccc-ccCCCcC
Q psy11143 666 HTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPI-YENGFST 705 (940)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 705 (940)
..+|||.||+|||+.||.||++.|+|+|++||. |.+|++.
T Consensus 82 ~~~yRt~DGscNNl~~P~~G~agt~f~R~v~p~~~~~~~~~ 122 (633)
T PLN02283 82 EYPYRTADGKCNDPFNEGAGSQGTFFGRNMPPVDQKDKLLD 122 (633)
T ss_pred cccccCCCCCCcCCCCcccccCCCccccCCCccccCCCCCC
Confidence 689999999999999999999999999999997 5555543
No 150
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.04 E-value=8e-10 Score=95.14 Aligned_cols=68 Identities=19% Similarity=0.221 Sum_probs=55.2
Q ss_pred EEEEEeecCcCCCeEEEEeCCeeeccC-CcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEE
Q psy11143 340 VEIPCKPDGEPLPRISWSKDEAEFVED-RNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT 408 (940)
Q Consensus 340 vtL~C~v~g~P~p~i~W~k~g~~i~~~-~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~ 408 (940)
+.|.|.+.|.|.|++.|+|++.++... .++.. ...+|.|.++..+|+|.|+|.|+|..+.......++
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~-~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~ 69 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHV-DGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTIT 69 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEe-CCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEE
Confidence 479999999999999999999988755 33333 445899999999999999999999866655554444
No 151
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.04 E-value=1.4e-09 Score=96.21 Aligned_cols=69 Identities=28% Similarity=0.452 Sum_probs=56.3
Q ss_pred EEEEEeeccCCCeEEEEECCEeecCCCCeEEE--e-------eceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEE
Q psy11143 64 RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE--H-------DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR 132 (940)
Q Consensus 64 ~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~--~-------~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~ 132 (940)
.|.|.+.|+|.|+|+|+|+|..|......... . ....|.|.+++.+|+|.|+|.|.|..|.......+.
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 37899999999999999999999766543222 1 123589999999999999999999999988876654
No 152
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.03 E-value=6.4e-10 Score=97.74 Aligned_cols=70 Identities=31% Similarity=0.528 Sum_probs=56.0
Q ss_pred EEEEEeecCcCCCeEEEEeCCeee--------ccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeE-EEEEEEEE
Q psy11143 340 VEIPCKPDGEPLPRISWSKDEAEF--------VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED-VAEGYLTV 409 (940)
Q Consensus 340 vtL~C~v~g~P~p~i~W~k~g~~i--------~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~-~~s~~L~V 409 (940)
|+|.|.+.|+|.|.|.|++++... ....++.+..+++|.|.++..+|+|.|+|.|.|..|.. +.++.|+|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 579999999999999999974321 12345555667899999999999999999999999977 44555553
No 153
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.03 E-value=8.3e-10 Score=94.60 Aligned_cols=70 Identities=33% Similarity=0.651 Sum_probs=58.7
Q ss_pred EEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEE
Q psy11143 247 SRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317 (940)
Q Consensus 247 v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V 317 (940)
+.|.|.+.|.|.|.+.|++++..+... +......+..|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPAD-RTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCC-ceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 479999999999999999999887643 3333344556999999999999999999999999888877766
No 154
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.03 E-value=6.5e-10 Score=100.39 Aligned_cols=74 Identities=30% Similarity=0.490 Sum_probs=57.5
Q ss_pred CCeEEEEEEeeccCCCeEEEEECC----EeecCCCCe--EEE---------eeceEEEEcccccCCCeEEEEEEEeCCCc
Q psy11143 60 GSTSRITCLVEGHPLPQMTWFHDG----NSLDSDDHV--TYE---------HDGFVLVLNGVRESDAGVYNCVAQNSEGS 124 (940)
Q Consensus 60 Gesv~L~C~v~g~P~p~V~W~kdg----~~I~~~~~~--~~~---------~~gs~L~I~~v~~~DsG~YtC~a~n~~g~ 124 (940)
|+.++|.|.+.|.|.|.|+|+|++ ..+...... ... .....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 789999999999999999999964 333211111 111 12346899999999999999999999999
Q ss_pred eEEEEEEEE
Q psy11143 125 AESVAMIRI 133 (940)
Q Consensus 125 ~~~~~~L~V 133 (940)
...++.|.|
T Consensus 81 ~~~sa~L~V 89 (90)
T cd04974 81 SHHSAWLTV 89 (90)
T ss_pred ccCCEEEEe
Confidence 888888877
No 155
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.02 E-value=1.3e-09 Score=93.85 Aligned_cols=70 Identities=29% Similarity=0.485 Sum_probs=55.5
Q ss_pred EEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEE
Q psy11143 63 SRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133 (940)
Q Consensus 63 v~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V 133 (940)
+.|.|.+.|.|.|++.|+|+|.++.... .++..++..|.|.+++.+|+|.|+|.|.|..........+++
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~-~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~ 70 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKC-SRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL 70 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCC-cEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence 4799999999999999999999987542 234445557899999999999999999998665555444443
No 156
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.02 E-value=1.5e-09 Score=95.16 Aligned_cols=69 Identities=28% Similarity=0.492 Sum_probs=55.8
Q ss_pred EEEEEeeccCCCeEEEEECCEeecCCCCeEEE-------eeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEE
Q psy11143 64 RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE-------HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR 132 (940)
Q Consensus 64 ~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~-------~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~ 132 (940)
.|.|.+.|+|.|+|+|+|||.+|..+...... .....|.|.++..+|+|.|+|.|+|..|....+..+.
T Consensus 2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 47899999999999999999999765543211 1224589999999999999999999999887766554
No 157
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.02 E-value=2.3e-09 Score=96.99 Aligned_cols=80 Identities=29% Similarity=0.544 Sum_probs=63.3
Q ss_pred CeEEEcCCceeecC---CCeEEEEEeecCcCCCeEEEEeCCeeecc--CCcEEEeeeceEEEecCCC-CCCeEEEEEEEe
Q psy11143 323 PRLVVKPFDMRAPA---GSSVEIPCKPDGEPLPRISWSKDEAEFVE--DRNHKIHRTGSLRLYNIGP-QDSGLYRCTASN 396 (940)
Q Consensus 323 P~i~~~p~~~~v~~---G~~vtL~C~v~g~P~p~i~W~k~g~~i~~--~~~~~i~~~~sL~I~~v~~-~D~G~YtC~A~N 396 (940)
|.|...|.++.+.. |+++.|.|.+.|+|.|.|+|+|++..+.. ..++. ..++.|.|.++.. +|+|.|+|.|.|
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~-~~~~~L~i~~~~~~~d~G~Y~C~a~N 80 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYS-LVGGNLVISNPSKAKDAGRYQCLASN 80 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEE-EECCEEEEecCCccCCCEEEEEEEEc
Confidence 66777777765544 46799999999999999999999988743 23333 3457899998875 899999999999
Q ss_pred CCeeEEE
Q psy11143 397 LLGEDVA 403 (940)
Q Consensus 397 ~~G~~~~ 403 (940)
..|....
T Consensus 81 ~~G~~~S 87 (91)
T cd04967 81 IVGTVLS 87 (91)
T ss_pred CCCEEEe
Confidence 9997654
No 158
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.01 E-value=2.7e-09 Score=97.98 Aligned_cols=86 Identities=31% Similarity=0.550 Sum_probs=67.8
Q ss_pred CCeEEeCCCcEEEecCCeEEEEEEeeccCCC-eEEEEECCEeecCCC--CeEEEee------ceEEEEcccccCC-CeEE
Q psy11143 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDD--HVTYEHD------GFVLVLNGVRESD-AGVY 114 (940)
Q Consensus 45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p-~V~W~kdg~~I~~~~--~~~~~~~------gs~L~I~~v~~~D-sG~Y 114 (940)
||.+ ..+....+.+|+++.|.|.+.|.|.| .|.|++++..+.... ++.+... .+.|.|.++..+| .|.|
T Consensus 2 pp~i-~~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y 80 (98)
T cd05758 2 PPII-TSEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY 80 (98)
T ss_pred CCeE-cCCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence 5655 44567788999999999999999998 699999999886543 3444322 1468999999955 8999
Q ss_pred EEEEEeCCCceEEEEEE
Q psy11143 115 NCVAQNSEGSAESVAMI 131 (940)
Q Consensus 115 tC~a~n~~g~~~~~~~L 131 (940)
+|.|.|..|.....+.|
T Consensus 81 ~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 81 NCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEEcCCCcccEEEEe
Confidence 99999999987776554
No 159
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.01 E-value=1.7e-09 Score=94.15 Aligned_cols=72 Identities=31% Similarity=0.675 Sum_probs=61.2
Q ss_pred EEEEEEeeccCCCeEEEEECCEeecCCCC--eEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEEe
Q psy11143 63 SRITCLVEGHPLPQMTWFHDGNSLDSDDH--VTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 134 (940)
Q Consensus 63 v~L~C~v~g~P~p~V~W~kdg~~I~~~~~--~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V~ 134 (940)
+.|.|.+.|.|.|.|.|+|++..+..... .....++..|.|.++..+|.|.|+|.+.|..|..+..+.|.|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 46999999999999999999998865433 3333556678999999999999999999999999988888775
No 160
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.00 E-value=2.4e-09 Score=96.72 Aligned_cols=74 Identities=34% Similarity=0.539 Sum_probs=58.0
Q ss_pred CCeEEEEEEeeccCCCeEEEEEC----CEeecCCCC--eEEEe---------eceEEEEcccccCCCeEEEEEEEeCCCc
Q psy11143 60 GSTSRITCLVEGHPLPQMTWFHD----GNSLDSDDH--VTYEH---------DGFVLVLNGVRESDAGVYNCVAQNSEGS 124 (940)
Q Consensus 60 Gesv~L~C~v~g~P~p~V~W~kd----g~~I~~~~~--~~~~~---------~gs~L~I~~v~~~DsG~YtC~a~n~~g~ 124 (940)
|+.++|.|.+.|.|.|.|+|+|+ |..+..... ..+.. ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 78999999999999999999984 444432221 11111 1246899999999999999999999999
Q ss_pred eEEEEEEEE
Q psy11143 125 AESVAMIRI 133 (940)
Q Consensus 125 ~~~~~~L~V 133 (940)
...++.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 888888876
No 161
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=98.99 E-value=2.4e-09 Score=93.22 Aligned_cols=72 Identities=31% Similarity=0.682 Sum_probs=62.0
Q ss_pred EEEEEEEeeeCCCeEEEEECCeecCCCC--ceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEEe
Q psy11143 247 SRITCLVEGHPLPQMTWFHDGNSLDSDD--HVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 318 (940)
Q Consensus 247 v~L~C~v~G~P~p~ItW~k~g~~l~~~~--~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V~ 318 (940)
+.|.|.+.|.|.|.+.|+|++..+.... ++....++..|.|.++..+|.|.|+|.|.|..|..+.++.|.|+
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 3689999999999999999999886543 34445556679999999999999999999999999999888875
No 162
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.98 E-value=1.7e-09 Score=98.52 Aligned_cols=78 Identities=23% Similarity=0.250 Sum_probs=64.4
Q ss_pred ceeecCCCeEEEEEeecC-----cCCCeEEEEeCCeeecc----CCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeE
Q psy11143 331 DMRAPAGSSVEIPCKPDG-----EPLPRISWSKDEAEFVE----DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 401 (940)
Q Consensus 331 ~~~v~~G~~vtL~C~v~g-----~P~p~i~W~k~g~~i~~----~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~ 401 (940)
...+.+|+.+.|.|.+.| .|.|.|.|+|++..+.. ..++. ...++|.|.++..+|+|.|+|.+.|..|..
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~-~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~ 86 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMH-QQKDLLWFLPAALEDSGLYTCVVRNSTYCM 86 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceee-ecCCeEEEccCCcccCeEEEEEEcCCCccE
Confidence 346678999999999999 68899999999875432 22322 235789999999999999999999999999
Q ss_pred EEEEEEEE
Q psy11143 402 VAEGYLTV 409 (940)
Q Consensus 402 ~~s~~L~V 409 (940)
..++.|.|
T Consensus 87 ~~~~~L~v 94 (94)
T cd05756 87 KVSISLTV 94 (94)
T ss_pred EEEEEEEC
Confidence 99988875
No 163
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.97 E-value=1.6e-09 Score=93.88 Aligned_cols=67 Identities=27% Similarity=0.551 Sum_probs=55.6
Q ss_pred EEEEEeecC-cCCCeEEEEeCCeeeccCCcEE---Ee---eeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEE
Q psy11143 340 VEIPCKPDG-EPLPRISWSKDEAEFVEDRNHK---IH---RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY 406 (940)
Q Consensus 340 vtL~C~v~g-~P~p~i~W~k~g~~i~~~~~~~---i~---~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~ 406 (940)
++|.|.+.| .|.|.+.|+|++..+....... +. ..++|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 479999999 9999999999999886554322 21 2457999999999999999999999999887764
No 164
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.97 E-value=1.7e-09 Score=94.82 Aligned_cols=67 Identities=25% Similarity=0.467 Sum_probs=56.7
Q ss_pred CeEEeCCCcEEEecCCeEEEEEEeeccCC-CeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeC
Q psy11143 46 PIFIQRPVSTTYSTGSTSRITCLVEGHPL-PQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNS 121 (940)
Q Consensus 46 P~~~~~p~~~~V~eGesv~L~C~v~g~P~-p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~ 121 (940)
|.+...|....+.+|++|+|+|.+.+.|. ..+.|+|||..+.. .+..|.|.++ .+|+|.|+|.|.+.
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~--------~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET--------TTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec--------cCCeEEEeec-ccCCEEeEEECCCC
Confidence 45677888899999999999999998775 47999999998732 2445799999 99999999999875
No 165
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.94 E-value=2.6e-09 Score=93.72 Aligned_cols=67 Identities=22% Similarity=0.362 Sum_probs=57.1
Q ss_pred CeEEEcCCceeecCCCeEEEEEeecCcCCC-eEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeC
Q psy11143 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNL 397 (940)
Q Consensus 323 P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p-~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~ 397 (940)
|.+...|....+.+|++|+|.|.+.+.|.+ .+.|+|+|..+.. ..++|.|.++ .+|+|.|+|.|.|.
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~-------~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET-------TTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec-------cCCeEEEeec-ccCCEEeEEECCCC
Confidence 456677777889999999999999998875 7999999987732 3458999999 99999999999885
No 166
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.93 E-value=4.4e-09 Score=93.80 Aligned_cols=78 Identities=26% Similarity=0.486 Sum_probs=64.8
Q ss_pred EcCCceeecCCCeEEEEEeecC-cCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEE
Q psy11143 327 VKPFDMRAPAGSSVEIPCKPDG-EPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG 405 (940)
Q Consensus 327 ~~p~~~~v~~G~~vtL~C~v~g-~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~ 405 (940)
..|....+.+|++++|.|.+.+ .|.+.+.|++++..+... .....+.|.|.++..+|+|.|+|.|.|..|...+++
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~---~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~ 82 (85)
T cd05754 6 EEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR---AMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATA 82 (85)
T ss_pred cCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc---ccccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEE
Confidence 3455678899999999999975 788899999998765332 123457899999999999999999999999999988
Q ss_pred EE
Q psy11143 406 YL 407 (940)
Q Consensus 406 ~L 407 (940)
.|
T Consensus 83 ~l 84 (85)
T cd05754 83 TL 84 (85)
T ss_pred EE
Confidence 76
No 167
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.93 E-value=8.4e-09 Score=94.23 Aligned_cols=85 Identities=27% Similarity=0.379 Sum_probs=69.1
Q ss_pred CCeEEEcCCceeecCCCeEEEEEeecCcCCC-eEEEEeCCeeecc--CCcEEEee-------eceEEEecCCCCC-CeEE
Q psy11143 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVE--DRNHKIHR-------TGSLRLYNIGPQD-SGLY 390 (940)
Q Consensus 322 ~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p-~i~W~k~g~~i~~--~~~~~i~~-------~~sL~I~~v~~~D-~G~Y 390 (940)
||.| .....+.+.+|++++|.|.+.+.|.| .|.|.+++..+.. ..++.+.. .++|.|.++...| .|.|
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y 80 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY 80 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence 5555 55566789999999999999999998 7899988877654 35776654 3479999998777 7999
Q ss_pred EEEEEeCCeeEEEEEEE
Q psy11143 391 RCTASNLLGEDVAEGYL 407 (940)
Q Consensus 391 tC~A~N~~G~~~~s~~L 407 (940)
.|.|.|.+|+....+.|
T Consensus 81 ~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 81 NCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEeCCccceEEEEe
Confidence 99999999999887766
No 168
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.93 E-value=4.2e-09 Score=92.17 Aligned_cols=65 Identities=29% Similarity=0.635 Sum_probs=52.0
Q ss_pred EEEEEeecCcCCCeEEEEeCCeeec--cCCcEEE-eeeceEEEecCCC----CCCeEEEEEEEeCCeeEEEE
Q psy11143 340 VEIPCKPDGEPLPRISWSKDEAEFV--EDRNHKI-HRTGSLRLYNIGP----QDSGLYRCTASNLLGEDVAE 404 (940)
Q Consensus 340 vtL~C~v~g~P~p~i~W~k~g~~i~--~~~~~~i-~~~~sL~I~~v~~----~D~G~YtC~A~N~~G~~~~s 404 (940)
+.|.|.+.|+|.|.|+|+|++..+. .+.++.+ ..+++|.|..+.. +|+|.|+|.|.|..|...+.
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 4799999999999999999998753 3445554 3467899988642 46999999999999977664
No 169
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.93 E-value=7.7e-09 Score=92.38 Aligned_cols=70 Identities=24% Similarity=0.500 Sum_probs=56.9
Q ss_pred CCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCC
Q psy11143 51 RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE 122 (940)
Q Consensus 51 ~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~ 122 (940)
.|.+..+.+|+++.|.|.+.+ |.++|+|++||.+|..+.. ++......|.|.+++.+|+|.|+|.+.+..
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~-r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESA-KYLLYRDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCc-eEEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence 577889999999999999865 6789999999999976532 233233346999999999999999998764
No 170
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.92 E-value=8.2e-09 Score=92.21 Aligned_cols=69 Identities=22% Similarity=0.448 Sum_probs=58.6
Q ss_pred cCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccC-CcEEEeeeceEEEecCCCCCCeEEEEEEEeCC
Q psy11143 328 KPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED-RNHKIHRTGSLRLYNIGPQDSGLYRCTASNLL 398 (940)
Q Consensus 328 ~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~-~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~ 398 (940)
.|.+..+..|+++.|.|.+.+ |.+.|.|+++|..+..+ .++. ..++.|.|.+++.+|+|.|+|.|.+..
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~-~~~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYL-LYRDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEE-EECCcEEEeCCCHHHCEEEEEEEEecc
Confidence 356778899999999999864 77899999999998766 3444 456789999999999999999999874
No 171
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.92 E-value=3.1e-09 Score=93.00 Aligned_cols=65 Identities=32% Similarity=0.623 Sum_probs=51.5
Q ss_pred EEEEEEeeccCCCeEEEEECCEeecCCC--CeEEEeeceEEEEccccc----CCCeEEEEEEEeCCCceEE
Q psy11143 63 SRITCLVEGHPLPQMTWFHDGNSLDSDD--HVTYEHDGFVLVLNGVRE----SDAGVYNCVAQNSEGSAES 127 (940)
Q Consensus 63 v~L~C~v~g~P~p~V~W~kdg~~I~~~~--~~~~~~~gs~L~I~~v~~----~DsG~YtC~a~n~~g~~~~ 127 (940)
++|.|.+.|.|.|+|+|+|+|..+.... ..........|.|.++.. +|+|.|+|.|.|..|...+
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 5799999999999999999999886433 333333345668888754 7899999999999998665
No 172
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.92 E-value=4.3e-09 Score=92.10 Aligned_cols=65 Identities=31% Similarity=0.639 Sum_probs=51.5
Q ss_pred EEEEEeecCcCCCeEEEEeCCeeecc--CCcEEEe-eeceEEEecCCC----CCCeEEEEEEEeCCeeEEEE
Q psy11143 340 VEIPCKPDGEPLPRISWSKDEAEFVE--DRNHKIH-RTGSLRLYNIGP----QDSGLYRCTASNLLGEDVAE 404 (940)
Q Consensus 340 vtL~C~v~g~P~p~i~W~k~g~~i~~--~~~~~i~-~~~sL~I~~v~~----~D~G~YtC~A~N~~G~~~~s 404 (940)
+.|.|.+.|.|.|+|+|+|++..+.. ..+..+. .+++|.|..+.. .|.|.|+|.|.|..|...+.
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSN 72 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence 57999999999999999999987632 2333333 367898988764 37899999999999987663
No 173
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.91 E-value=5.2e-09 Score=93.09 Aligned_cols=73 Identities=18% Similarity=0.284 Sum_probs=58.8
Q ss_pred CCeEEEEEeecCc--CCCeEEEEeCCeeeccCC----cEE----EeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEE
Q psy11143 337 GSSVEIPCKPDGE--PLPRISWSKDEAEFVEDR----NHK----IHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY 406 (940)
Q Consensus 337 G~~vtL~C~v~g~--P~p~i~W~k~g~~i~~~~----~~~----i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~ 406 (940)
|++++|.|.+.|. |.|.|.|.+++..+.... +.. ....++|.|.+++.+|+|.|+|.|.|..|..++++.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 7899999999999 888999998776542211 011 113458999999999999999999999999999998
Q ss_pred EEE
Q psy11143 407 LTV 409 (940)
Q Consensus 407 L~V 409 (940)
|.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 876
No 174
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.90 E-value=5.1e-09 Score=90.70 Aligned_cols=68 Identities=25% Similarity=0.492 Sum_probs=55.2
Q ss_pred EEEEEEeec-cCCCeEEEEECCEeecCCCCeE---EE--eeceEEEEcccccCCCeEEEEEEEeCCCceEEEEE
Q psy11143 63 SRITCLVEG-HPLPQMTWFHDGNSLDSDDHVT---YE--HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAM 130 (940)
Q Consensus 63 v~L~C~v~g-~P~p~V~W~kdg~~I~~~~~~~---~~--~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~ 130 (940)
++|.|.+.| .|.|.+.|+|+|..+....... +. .....|.|.+++.+|+|.|+|.|.|..|....++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 469999999 9999999999999987654432 22 23356899999999999999999999998776553
No 175
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.90 E-value=3.8e-09 Score=92.42 Aligned_cols=64 Identities=30% Similarity=0.660 Sum_probs=51.9
Q ss_pred EEEEEeecCcCCCeEEEEeCCeeeccC--CcEEEe-eeceEEEecCCC----CCCeEEEEEEEeCCeeEEE
Q psy11143 340 VEIPCKPDGEPLPRISWSKDEAEFVED--RNHKIH-RTGSLRLYNIGP----QDSGLYRCTASNLLGEDVA 403 (940)
Q Consensus 340 vtL~C~v~g~P~p~i~W~k~g~~i~~~--~~~~i~-~~~sL~I~~v~~----~D~G~YtC~A~N~~G~~~~ 403 (940)
++|.|.+.|.|.|+|+|+|++..+... .++.+. .+++|.|..+.. +|+|.|+|.|.|.+|...+
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 579999999999999999999887532 344332 367899998854 7899999999999997655
No 176
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.90 E-value=6.7e-09 Score=90.91 Aligned_cols=65 Identities=35% Similarity=0.643 Sum_probs=50.8
Q ss_pred EEEEEEeeccCCCeEEEEECCEeecCCC--CeEEEeeceEEEEccccc----CCCeEEEEEEEeCCCceEE
Q psy11143 63 SRITCLVEGHPLPQMTWFHDGNSLDSDD--HVTYEHDGFVLVLNGVRE----SDAGVYNCVAQNSEGSAES 127 (940)
Q Consensus 63 v~L~C~v~g~P~p~V~W~kdg~~I~~~~--~~~~~~~gs~L~I~~v~~----~DsG~YtC~a~n~~g~~~~ 127 (940)
+.|.|.+.|.|.|+|+|+|+|.++.... ...+...+..|.|..+.. .|+|.|+|.|.|..|...+
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 5799999999999999999999874332 334444445668877764 3789999999999998666
No 177
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.90 E-value=7.8e-09 Score=90.48 Aligned_cols=66 Identities=30% Similarity=0.550 Sum_probs=50.9
Q ss_pred EEEEEEeeccCCCeEEEEECCEeecC--CCCeEEEeeceEEEEcccc----cCCCeEEEEEEEeCCCceEEE
Q psy11143 63 SRITCLVEGHPLPQMTWFHDGNSLDS--DDHVTYEHDGFVLVLNGVR----ESDAGVYNCVAQNSEGSAESV 128 (940)
Q Consensus 63 v~L~C~v~g~P~p~V~W~kdg~~I~~--~~~~~~~~~gs~L~I~~v~----~~DsG~YtC~a~n~~g~~~~~ 128 (940)
+.|.|.+.|+|.|.|+|+|+|..+.. ..+..+...+..|.|..+. .+|+|.|+|.|.|..|...+.
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 47999999999999999999987643 3334443345567888764 246999999999999977663
No 178
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.89 E-value=7e-09 Score=91.28 Aligned_cols=74 Identities=27% Similarity=0.490 Sum_probs=56.1
Q ss_pred CCeEEEEEEeeccCCCeEEEEECCE---e--ecCCC-CeEEE-eeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEE
Q psy11143 60 GSTSRITCLVEGHPLPQMTWFHDGN---S--LDSDD-HVTYE-HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR 132 (940)
Q Consensus 60 Gesv~L~C~v~g~P~p~V~W~kdg~---~--I~~~~-~~~~~-~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~ 132 (940)
|+.++|.|.+.|.|.|.|+|+|++. . +.... ..++. .....|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS 80 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence 7899999999999999999999742 1 11111 01111 2334679999999999999999999999988877765
Q ss_pred E
Q psy11143 133 I 133 (940)
Q Consensus 133 V 133 (940)
|
T Consensus 81 v 81 (81)
T cd05765 81 V 81 (81)
T ss_pred C
Confidence 4
No 179
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.87 E-value=1.1e-08 Score=92.05 Aligned_cols=83 Identities=18% Similarity=0.322 Sum_probs=61.8
Q ss_pred CCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCC--CeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceE-E
Q psy11143 51 RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD--HVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE-S 127 (940)
Q Consensus 51 ~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~--~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~-~ 127 (940)
+|..+.+.+|+++.|.|.+.+ |.+.+.|+|++..+.... ..++......|.|.+++.+|+|.|+|.|.+..+... .
T Consensus 2 ~~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~ 80 (89)
T cd04979 2 EEKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLA 80 (89)
T ss_pred cceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEe
Confidence 356678899999999999987 778999999998776542 123333333478999999999999999997755333 3
Q ss_pred EEEEEEe
Q psy11143 128 VAMIRIN 134 (940)
Q Consensus 128 ~~~L~V~ 134 (940)
+..|.|.
T Consensus 81 ~~~l~V~ 87 (89)
T cd04979 81 TYSLNVL 87 (89)
T ss_pred EEEEEEe
Confidence 5555553
No 180
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.87 E-value=1.9e-08 Score=89.06 Aligned_cols=78 Identities=32% Similarity=0.526 Sum_probs=64.1
Q ss_pred eeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEe----eeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEE
Q psy11143 332 MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH----RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYL 407 (940)
Q Consensus 332 ~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~----~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L 407 (940)
+.+..|+.++|.|.+.+.|.+.+.|++++..+......... ....|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l 83 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV 83 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence 35678999999999999999999999999887644333221 12369999999999999999999999998888877
Q ss_pred EE
Q psy11143 408 TV 409 (940)
Q Consensus 408 ~V 409 (940)
.|
T Consensus 84 ~v 85 (85)
T cd05729 84 DV 85 (85)
T ss_pred eC
Confidence 64
No 181
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.87 E-value=9.7e-09 Score=91.56 Aligned_cols=78 Identities=26% Similarity=0.421 Sum_probs=63.3
Q ss_pred eCCCcEEEecCCeEEEEEEeec-cCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEE
Q psy11143 50 QRPVSTTYSTGSTSRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESV 128 (940)
Q Consensus 50 ~~p~~~~V~eGesv~L~C~v~g-~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~ 128 (940)
..|....+.+|++++|.|.+.+ .|.+.|.|++++..++.. ....+..|.|.+++.+|+|.|+|.+.|..|.....
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~----~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~ 81 (85)
T cd05754 6 EEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR----AMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEAT 81 (85)
T ss_pred cCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc----ccccCCEEEECCCCHHHCEEEEEEEeccCCeEeEE
Confidence 4456778999999999999975 688899999998775432 12234568999999999999999999999988876
Q ss_pred EEE
Q psy11143 129 AMI 131 (940)
Q Consensus 129 ~~L 131 (940)
+.|
T Consensus 82 ~~l 84 (85)
T cd05754 82 ATL 84 (85)
T ss_pred EEE
Confidence 654
No 182
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.84 E-value=1.2e-08 Score=89.55 Aligned_cols=69 Identities=25% Similarity=0.510 Sum_probs=52.1
Q ss_pred EEEEEEEeeeCCCeEEEEECCeecC--------CCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCce-eEEEEE
Q psy11143 247 SRITCLVEGHPLPQMTWFHDGNSLD--------SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE-SVAMIR 316 (940)
Q Consensus 247 v~L~C~v~G~P~p~ItW~k~g~~l~--------~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~-~s~~l~ 316 (940)
++|.|.+.|+|.|.++|++++.... ...++....++ +|.|.++..+|+|.|+|.|.|..|... .++.|.
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~-~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~ 78 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNG-SLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLT 78 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCC-eEEECcCCcccCEEEEEEEEeCCCCCCceEEEEe
Confidence 5799999999999999999743211 23344444444 499999999999999999999999773 344443
No 183
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.82 E-value=3.1e-08 Score=87.69 Aligned_cols=78 Identities=29% Similarity=0.632 Sum_probs=62.1
Q ss_pred EEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEE---eeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEE
Q psy11143 55 TTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE---HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMI 131 (940)
Q Consensus 55 ~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~---~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L 131 (940)
..+.+|+.+.|.|.+.+.|.+.+.|++++..+......... .....|.|.++..+|+|.|+|.+.|..|..+.+..|
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l 83 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV 83 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence 45678999999999999999999999999887644322211 223458999999999999999999999987766655
Q ss_pred E
Q psy11143 132 R 132 (940)
Q Consensus 132 ~ 132 (940)
.
T Consensus 84 ~ 84 (85)
T cd05729 84 D 84 (85)
T ss_pred e
Confidence 4
No 184
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.82 E-value=1.9e-08 Score=89.46 Aligned_cols=74 Identities=18% Similarity=0.299 Sum_probs=57.9
Q ss_pred CCeEEEEEEeecc--CCCeEEEEECCEeecCCCCe---EE----EeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEE
Q psy11143 60 GSTSRITCLVEGH--PLPQMTWFHDGNSLDSDDHV---TY----EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAM 130 (940)
Q Consensus 60 Gesv~L~C~v~g~--P~p~V~W~kdg~~I~~~~~~---~~----~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~ 130 (940)
|++++|.|.+.+. |.+.|+|++++..+...... .. ....+.|+|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 7899999999998 88899999887654322110 00 123356899999999999999999999999888887
Q ss_pred EEE
Q psy11143 131 IRI 133 (940)
Q Consensus 131 L~V 133 (940)
|.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 765
No 185
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.78 E-value=3e-08 Score=90.48 Aligned_cols=80 Identities=20% Similarity=0.448 Sum_probs=61.9
Q ss_pred CCceeecCCCeEEEEEeecCcCCCeEEEEeCCe--------eeccCCcEEEee----eceEEEecCCCCCCeEEEEEEEe
Q psy11143 329 PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEA--------EFVEDRNHKIHR----TGSLRLYNIGPQDSGLYRCTASN 396 (940)
Q Consensus 329 p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~--------~i~~~~~~~i~~----~~sL~I~~v~~~D~G~YtC~A~N 396 (940)
+.++.+.+|++++|.|.+.+.|.|.+.|++.+. ....+.++.+.. ..+|.|.+++.+|+|.|+|.+.+
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t 83 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT 83 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence 456789999999999999999999999986332 222345665432 35899999999999999999998
Q ss_pred CCeeEEEEEEEEE
Q psy11143 397 LLGEDVAEGYLTV 409 (940)
Q Consensus 397 ~~G~~~~s~~L~V 409 (940)
. ...+.+++|+|
T Consensus 84 ~-~~~~~~~~l~v 95 (95)
T cd07701 84 M-PVKTSKAYLTV 95 (95)
T ss_pred e-cCccEEEEEEC
Confidence 5 44477777765
No 186
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.78 E-value=1.7e-08 Score=87.91 Aligned_cols=67 Identities=25% Similarity=0.488 Sum_probs=53.3
Q ss_pred EEEEEeecC-cCCCeEEEEeCCeeeccC----CcEEEe---eeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEE
Q psy11143 340 VEIPCKPDG-EPLPRISWSKDEAEFVED----RNHKIH---RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY 406 (940)
Q Consensus 340 vtL~C~v~g-~P~p~i~W~k~g~~i~~~----~~~~i~---~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~ 406 (940)
+.|.|.+.+ .|.+.+.|++++..+... .++.+. ..++|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 479999874 688899999999887532 122222 2357999999999999999999999999888764
No 187
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.77 E-value=4.4e-08 Score=89.40 Aligned_cols=82 Identities=20% Similarity=0.334 Sum_probs=59.3
Q ss_pred CCCcEEEecCCeEEEEEEeeccCCCeEEEEECC--------EeecCCCCeEEE---eeceEEEEcccccCCCeEEEEEEE
Q psy11143 51 RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG--------NSLDSDDHVTYE---HDGFVLVLNGVRESDAGVYNCVAQ 119 (940)
Q Consensus 51 ~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg--------~~I~~~~~~~~~---~~gs~L~I~~v~~~DsG~YtC~a~ 119 (940)
.++++.+.+|++++|.|.+.+.|.+.|.|++.+ .......++... .....|.|.+++.+|+|.|+|.+.
T Consensus 3 ~~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~ 82 (95)
T cd07701 3 LTQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLF 82 (95)
T ss_pred ccceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeE
Confidence 356788999999999999999999999998632 222223344332 233568999999999999999999
Q ss_pred eCCCceEEEEEEEE
Q psy11143 120 NSEGSAESVAMIRI 133 (940)
Q Consensus 120 n~~g~~~~~~~L~V 133 (940)
...+. ...+.|+|
T Consensus 83 t~~~~-~~~~~l~v 95 (95)
T cd07701 83 TMPVK-TSKAYLTV 95 (95)
T ss_pred eecCc-cEEEEEEC
Confidence 75333 44555543
No 188
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.77 E-value=1.9e-08 Score=89.32 Aligned_cols=71 Identities=21% Similarity=0.301 Sum_probs=56.4
Q ss_pred CCCcEEEecCCeEEEEEEeec-cCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEE
Q psy11143 51 RPVSTTYSTGSTSRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES 127 (940)
Q Consensus 51 ~p~~~~V~eGesv~L~C~v~g-~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~ 127 (940)
++....|.+|++++|.|.+.+ .+.+.+.|+|+|..+... ..+..|.|.+++.+|+|.|+|.+.+..+...+
T Consensus 5 ~~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s 76 (83)
T cd05753 5 QVPSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS------HSNSNLSIPQATLSDSGSYHCSGIIGSYDYSS 76 (83)
T ss_pred ECCcceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc------CCCceEEECccCHHHCEEEEEEEEeCCceecC
Confidence 344557899999999999854 566789999999876421 22356799999999999999999999885544
No 189
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.77 E-value=6.3e-08 Score=88.49 Aligned_cols=86 Identities=29% Similarity=0.529 Sum_probs=67.3
Q ss_pred CCeEEeCCCcEEEecCCeEEEEEEeeccCCC-eEEEEECCEeecCC--CCeEEEe------eceEEEEcccccCC-CeEE
Q psy11143 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSD--DHVTYEH------DGFVLVLNGVRESD-AGVY 114 (940)
Q Consensus 45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p-~V~W~kdg~~I~~~--~~~~~~~------~gs~L~I~~v~~~D-sG~Y 114 (940)
||.+ .....+.+.+|+++.|.|.+.+.|+| .|.|..++..|... .++.+.. ..+.|.|.++..+| .|.|
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y 80 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY 80 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence 5655 56677889999999999999887776 78999888877554 3444442 33569999998877 7999
Q ss_pred EEEEEeCCCceEEEEEE
Q psy11143 115 NCVAQNSEGSAESVAMI 131 (940)
Q Consensus 115 tC~a~n~~g~~~~~~~L 131 (940)
.|.|.|..|.....+.|
T Consensus 81 ~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 81 NCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEeCCccceEEEEe
Confidence 99999999998776554
No 190
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.77 E-value=3e-08 Score=89.84 Aligned_cols=77 Identities=21% Similarity=0.272 Sum_probs=62.8
Q ss_pred eeecCCCeEEEEEeecC-----cCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEE
Q psy11143 332 MRAPAGSSVEIPCKPDG-----EPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY 406 (940)
Q Consensus 332 ~~v~~G~~vtL~C~v~g-----~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~ 406 (940)
+.+.+|+++.|.|...+ +|.|.+.|+|++.++....+.. ...+.|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~-~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t 83 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRF-VKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVT 83 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEE-ecCCEEEEeeCChhhCEEEEEEEEecCCCEEEEEE
Confidence 46788999999998653 3678999999999987655443 36779999999999999999999999988776665
Q ss_pred EEE
Q psy11143 407 LTV 409 (940)
Q Consensus 407 L~V 409 (940)
.++
T Consensus 84 ~t~ 86 (92)
T cd05757 84 RTI 86 (92)
T ss_pred EEE
Confidence 544
No 191
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.77 E-value=4.8e-08 Score=87.02 Aligned_cols=74 Identities=20% Similarity=0.388 Sum_probs=57.0
Q ss_pred CCeEEEEEeecCcCCCeEEEEeCCeeeccCC----cEEE---eeeceEEEecCCCCCCeEEEEEEEeCCe--eEEEEEEE
Q psy11143 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDR----NHKI---HRTGSLRLYNIGPQDSGLYRCTASNLLG--EDVAEGYL 407 (940)
Q Consensus 337 G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~----~~~i---~~~~sL~I~~v~~~D~G~YtC~A~N~~G--~~~~s~~L 407 (940)
|++++|.|.+.+.|.+.+.|++.+....... +..+ ....+|.|.+++.+|+|.|+|.|+|..+ ....++.|
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 7899999999999999999998775322111 1111 1245899999999999999999999887 66777777
Q ss_pred EEe
Q psy11143 408 TVT 410 (940)
Q Consensus 408 ~V~ 410 (940)
+|.
T Consensus 81 ~V~ 83 (84)
T cd05861 81 TVH 83 (84)
T ss_pred EEe
Confidence 764
No 192
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.75 E-value=4.9e-08 Score=87.82 Aligned_cols=80 Identities=20% Similarity=0.369 Sum_probs=62.3
Q ss_pred CCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccC----CcEEEeeeceEEEecCCCCCCeEEEEEEEeCC-eeEEE
Q psy11143 329 PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED----RNHKIHRTGSLRLYNIGPQDSGLYRCTASNLL-GEDVA 403 (940)
Q Consensus 329 p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~----~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~-G~~~~ 403 (940)
|..+.+.+|+.+.|.|.+.+ |.+.+.|+|++..+... .++.. ..+.|.|.+++.+|+|.|+|.|.|.. +....
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~ 80 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLV-TEDGLLIRSVSPADAGVYTCQSVEHGFKQTLA 80 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEE-cCCCEEEccCCHHHCEEEEEEEecCccceeEe
Confidence 44567889999999999987 88899999999876544 23333 34579999999999999999999754 45555
Q ss_pred EEEEEEe
Q psy11143 404 EGYLTVT 410 (940)
Q Consensus 404 s~~L~V~ 410 (940)
+..|.|.
T Consensus 81 ~~~l~V~ 87 (89)
T cd04979 81 TYSLNVL 87 (89)
T ss_pred EEEEEEe
Confidence 6677765
No 193
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.75 E-value=4.6e-08 Score=88.61 Aligned_cols=78 Identities=23% Similarity=0.441 Sum_probs=61.8
Q ss_pred cEEEecCCeEEEEEEeec-----cCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEE
Q psy11143 54 STTYSTGSTSRITCLVEG-----HPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESV 128 (940)
Q Consensus 54 ~~~V~eGesv~L~C~v~g-----~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~ 128 (940)
.+.+.+|+.+.|.|...+ +|.|.|.|||++.++..... .+. .+..|.|.++..+|+|.|+|.+.|..+.....
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~-~~~-~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~ 81 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRK-RFV-KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYN 81 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCcc-EEe-cCCEEEEeeCChhhCEEEEEEEEecCCCEEEE
Confidence 456889999999998743 35779999999999875443 332 55678999999999999999999998887765
Q ss_pred EEEEE
Q psy11143 129 AMIRI 133 (940)
Q Consensus 129 ~~L~V 133 (940)
++.++
T Consensus 82 ~t~t~ 86 (92)
T cd05757 82 VTRTI 86 (92)
T ss_pred EEEEE
Confidence 54444
No 194
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.74 E-value=6.7e-08 Score=88.13 Aligned_cols=79 Identities=19% Similarity=0.362 Sum_probs=60.2
Q ss_pred CceeecCCCeEEEEEeecCcCCCeEEEEeCCeee--------ccCCcEEEee----eceEEEecCCCCCCeEEEEEEEeC
Q psy11143 330 FDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEF--------VEDRNHKIHR----TGSLRLYNIGPQDSGLYRCTASNL 397 (940)
Q Consensus 330 ~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i--------~~~~~~~i~~----~~sL~I~~v~~~D~G~YtC~A~N~ 397 (940)
.++.+.+|+++.|.|.+.+.|.|.|.|+|++..+ ..+.++.+.. ..+|.|.++..+|+|.|+|.+..
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t- 83 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT- 83 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe-
Confidence 4678899999999999999999999999877543 1234444321 35899999999999999999988
Q ss_pred CeeEEEEEEEEE
Q psy11143 398 LGEDVAEGYLTV 409 (940)
Q Consensus 398 ~G~~~~s~~L~V 409 (940)
.-..++.+.|+|
T Consensus 84 ~~~~~~~~~~~v 95 (95)
T cd05882 84 MPVRTAKATVTV 95 (95)
T ss_pred eccccEEEEEEC
Confidence 334455555543
No 195
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.73 E-value=9.9e-08 Score=87.01 Aligned_cols=80 Identities=19% Similarity=0.354 Sum_probs=58.3
Q ss_pred CCcEEEecCCeEEEEEEeeccCCCeEEEEECCEee--------cCCCCeEEE---eeceEEEEcccccCCCeEEEEEEEe
Q psy11143 52 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL--------DSDDHVTYE---HDGFVLVLNGVRESDAGVYNCVAQN 120 (940)
Q Consensus 52 p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I--------~~~~~~~~~---~~gs~L~I~~v~~~DsG~YtC~a~n 120 (940)
..++++.+|+++.|.|.+.+.|.+.|.|++++..+ ....++.+. .....|.|.+++.+|+|.|+|.+..
T Consensus 4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 45788999999999999999999999999877532 112233322 1235689999999999999999987
Q ss_pred CCCceEEEEEEE
Q psy11143 121 SEGSAESVAMIR 132 (940)
Q Consensus 121 ~~g~~~~~~~L~ 132 (940)
. -..+..++|+
T Consensus 84 ~-~~~~~~~~~~ 94 (95)
T cd05882 84 M-PVRTAKATVT 94 (95)
T ss_pred e-ccccEEEEEE
Confidence 2 2333344443
No 196
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.73 E-value=7.9e-08 Score=85.63 Aligned_cols=74 Identities=23% Similarity=0.425 Sum_probs=53.9
Q ss_pred CCeEEEEEEeeccCCCeEEEEECCEeecCCC----CeEEE--eeceEEEEcccccCCCeEEEEEEEeCCC--ceEEEEEE
Q psy11143 60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDD----HVTYE--HDGFVLVLNGVRESDAGVYNCVAQNSEG--SAESVAMI 131 (940)
Q Consensus 60 Gesv~L~C~v~g~P~p~V~W~kdg~~I~~~~----~~~~~--~~gs~L~I~~v~~~DsG~YtC~a~n~~g--~~~~~~~L 131 (940)
|++++|+|.+.+.|.+.+.|++.++...... ...+. .....|.|.+++.+|+|.|+|.|.|..+ ....++.|
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 7899999999999999999998776432111 11111 2245689999999999999999999876 33345555
Q ss_pred EE
Q psy11143 132 RI 133 (940)
Q Consensus 132 ~V 133 (940)
+|
T Consensus 81 ~V 82 (84)
T cd05861 81 TV 82 (84)
T ss_pred EE
Confidence 54
No 197
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.72 E-value=4.1e-08 Score=85.52 Aligned_cols=68 Identities=18% Similarity=0.404 Sum_probs=52.3
Q ss_pred EEEEEEeec-cCCCeEEEEECCEeecCCC--Ce--EEE--eeceEEEEcccccCCCeEEEEEEEeCCCceEEEEE
Q psy11143 63 SRITCLVEG-HPLPQMTWFHDGNSLDSDD--HV--TYE--HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAM 130 (940)
Q Consensus 63 v~L~C~v~g-~P~p~V~W~kdg~~I~~~~--~~--~~~--~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~ 130 (940)
+.|+|.+.+ .|.+.+.|+|+|..+.... .. .+. .....|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 479999875 6888999999999886432 12 222 23356899999999999999999999998776543
No 198
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.70 E-value=6.7e-08 Score=79.30 Aligned_cols=63 Identities=38% Similarity=0.795 Sum_probs=52.6
Q ss_pred cCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCC
Q psy11143 59 TGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG 123 (940)
Q Consensus 59 eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g 123 (940)
+|++++|.|.+.+.|.+.+.|++++..+. ...........|.|.+++.+|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP--ESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECC--CCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 58999999999888999999999998887 2333344556789999999999999999988754
No 199
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.69 E-value=7.4e-08 Score=79.04 Aligned_cols=63 Identities=33% Similarity=0.690 Sum_probs=53.1
Q ss_pred CCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCe
Q psy11143 336 AGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLG 399 (940)
Q Consensus 336 ~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G 399 (940)
+|++++|.|.+.+.|.+.+.|++++..+. ...........|.|.++..+|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP-ESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECC-CCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 48899999999999999999999998776 3333334456899999999999999999999865
No 200
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.68 E-value=4.7e-08 Score=88.74 Aligned_cols=73 Identities=16% Similarity=0.208 Sum_probs=56.9
Q ss_pred CcEEEecCCeEEEEEEe-eccCCCeEEEEECCEee--cCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCce
Q psy11143 53 VSTTYSTGSTSRITCLV-EGHPLPQMTWFHDGNSL--DSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA 125 (940)
Q Consensus 53 ~~~~V~eGesv~L~C~v-~g~P~p~V~W~kdg~~I--~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~ 125 (940)
..+.+.+|+.+.|.|.. .|.|.+.|.|++++..+ ..+.+..+......|.|.+|+.+|+|.|+|.|+|.....
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence 45678999999999986 67899999999998764 223333344434456999999999999999999976543
No 201
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.68 E-value=1.7e-07 Score=81.64 Aligned_cols=78 Identities=33% Similarity=0.610 Sum_probs=60.4
Q ss_pred CeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCe-eE
Q psy11143 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLG-ED 401 (940)
Q Consensus 323 P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G-~~ 401 (940)
|.+...+ ..+.+|++++|.|.+.+.|.+.+.|++++..+.... ..+.+..+..+|.|.|+|.|.|..| ..
T Consensus 2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~-------~~~~~~~~~~~~~g~y~C~~~~~~~~~~ 72 (80)
T PF13895_consen 2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ-------NGLFIPNVSPEDSGNYTCRASNGSGSNT 72 (80)
T ss_dssp -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEES-------SEEEESSEEGGGTEEEEEEEEETTEEEE
T ss_pred cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee-------eeeeeeeeccccCEEEEEEEEeCCCCeE
Confidence 5555544 568899999999999999999999999987775222 1277888999999999999999665 45
Q ss_pred EEEEEEEE
Q psy11143 402 VAEGYLTV 409 (940)
Q Consensus 402 ~~s~~L~V 409 (940)
+.++.|+|
T Consensus 73 s~~~~v~V 80 (80)
T PF13895_consen 73 STSVNVTV 80 (80)
T ss_dssp EEEEEEEE
T ss_pred eeeEEeeC
Confidence 55666654
No 202
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=98.67 E-value=0.00035 Score=93.30 Aligned_cols=361 Identities=14% Similarity=0.088 Sum_probs=215.5
Q ss_pred CCCCCeEEEEEE--EcCCceEEEEEEEEEeCCC-eEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCe
Q psy11143 16 QREHGGRYSCVA--GNPAGVYRGDLHVTVNAPP-IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV 92 (940)
Q Consensus 16 ~~sDsG~Y~C~a--~n~~g~~~~~v~l~V~~pP-~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~ 92 (940)
...+.|.|...+ .|..|....+..+.|..|- .+.+......+..|++|.|.-...+.....+.|..++..-......
T Consensus 1665 t~~~pG~Y~VtL~aSN~vG~~t~s~~i~v~epi~~L~L~aS~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~~s~p 1744 (2740)
T TIGR00864 1665 NPLEAGPCDIFLQAANLLGQATADCTIDFLEPAGNLMLQASDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLETSEP 1744 (2740)
T ss_pred ecCCCceEEEEEEEeecccceeeEEEEEEEEEcCceEEeccCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCcccCCC
Confidence 446789888865 4888877666666665432 3334444555678999999987777777899998765321110111
Q ss_pred EEEeeceEEEEcccccCCCeEEEE--EEEeCCCceEEEEEEEEecccCCeeEecCCc----eeecCCCcEEEEEEeCCCC
Q psy11143 93 TYEHDGFVLVLNGVRESDAGVYNC--VAQNSEGSAESVAMIRINGHRAPRLVVKPFD----MRAPAGSSVEIPCKPDGEP 166 (940)
Q Consensus 93 ~~~~~gs~L~I~~v~~~DsG~YtC--~a~n~~g~~~~~~~L~V~~~~~P~~~~~p~~----~~v~~Ge~vtL~C~v~g~P 166 (940)
.+ .-+-...|.|.. .|.|..|+...+..+.|...-. -+.+.... ..+..|.++.|.=.+....
T Consensus 1745 ~~----------tHtf~~~G~y~VtVta~N~vss~~~s~~V~VqepV~-GL~i~~~~~~~~~~~~ag~~v~F~a~vstGs 1813 (2740)
T TIGR00864 1745 FM----------SHSFPSAGLHLVTMKAFNELGSANASEEVDVQEPIS-GLKIRAADAGEQNFFAADSSVCFQGELATGT 1813 (2740)
T ss_pred ce----------EEEccCCceEEEEEEEEccccccceeEEEEEEeccc-cceEecCCCCcccceecCcEEEEEEEccCCC
Confidence 00 122445788855 5578888777766666654322 12222111 1455688888877755434
Q ss_pred CCeEEEeeCCeeccccCceEEeeeceEEEeecccCCCceEEE--EEEcCCcceeeeeeeeecCCCCeeeeCCCeeEEecC
Q psy11143 167 LPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRC--TASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTG 244 (940)
Q Consensus 167 ~p~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~~~DsG~YtC--~a~N~~g~~s~s~~L~V~~~~p~~~~~p~~~~v~~G 244 (940)
...+.|..++..-...+ .. ..+..+.|.|+. .|.|..+....+..+.|+.....+........+..|
T Consensus 1814 nVsw~W~f~~g~s~~gk--------~v---~~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~as~~~~~~n 1882 (2740)
T TIGR00864 1814 NVSWCWAIDGGSSKMGK--------HA---CMTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIFGLELKASKKIAAIG 1882 (2740)
T ss_pred eeEEEEEeCCCCccccc--------ee---EEecCCCeEEEEEEEEEcccCcceeeeeEEEEEecceEEEecccccccCC
Confidence 44788877654311111 11 135678898866 467888888888888888555555566666677889
Q ss_pred CeEEEEEEEeeeCCCeEEEEECCee-cCCCCceEEeecCeEEEEeeeccCCCeEE--EEEEEeCCCCceeEEEEEEeecc
Q psy11143 245 STSRITCLVEGHPLPQMTWFHDGNS-LDSDDHVTYEHDGFVLVLNGVRESDAGVY--NCVAQNSEGSAESVAMIRINGHR 321 (940)
Q Consensus 245 ~~v~L~C~v~G~P~p~ItW~k~g~~-l~~~~~~~~~~~g~sL~I~~v~~~DsG~Y--tC~A~N~~Gs~~~s~~l~V~~~~ 321 (940)
+.++|.+.+...+...+.|...+.. .... .+. .....- ...|.| +-.|.|..+.......+.|....
T Consensus 1883 ~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t-------~~~-t~~HsY--~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V 1952 (2740)
T TIGR00864 1883 EKVEFQILLAAGSAVNFRLQIGGAAPEVLQ-------PGP-RFSHSF--PRVDDHMVNLRAKNEVSCAQANLHIEVLEAV 1952 (2740)
T ss_pred CEEEEEEEecCCCceEEEEEeCCCCceeec-------CCC-eEEeec--CCCCcEEEEEEEEeccceeeeeEEEEEEEec
Confidence 9999999988777788889876432 2110 111 111112 234555 45678988887777666664321
Q ss_pred CCeEEEcCCce-eecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEE--EEEEeCC
Q psy11143 322 APRLVVKPFDM-RAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYR--CTASNLL 398 (940)
Q Consensus 322 ~P~i~~~p~~~-~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~Yt--C~A~N~~ 398 (940)
.-+.+..... .+..|+..++.-.+...-+..+.|+..-..+..+..+. ....+.+.. ....|.|+ ..|.|..
T Consensus 1953 -~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~V~f~W~f~~~~~~g~~~~~-~~G~~vty~---~~~~G~~~I~v~A~N~l 2027 (2740)
T TIGR00864 1953 -RGLQIPDCCAAGIATGEEKNFTANVQRGKPVAFAWTFDLHHLHGDSLVI-HMGKDVSYT---AEAAGLLEIQLGAFNAL 2027 (2740)
T ss_pred -cceEecCCcccceecCceEEEEEEEecCCceEEEEEeeecccCCCccee-ecCCceEEc---cCCCcEEEEEEEEEccc
Confidence 2222222111 26789999999887654445899986533222222211 111111111 13578875 5789999
Q ss_pred eeEEEEEEEEEecCC
Q psy11143 399 GEDVAEGYLTVTGEN 413 (940)
Q Consensus 399 G~~~~s~~L~V~~~~ 413 (940)
|.......+.|+.+-
T Consensus 2028 ~s~n~t~~i~VQ~~i 2042 (2740)
T TIGR00864 2028 GAENITLQLEAQDAL 2042 (2740)
T ss_pred CcccccEEEEEEehe
Confidence 988777777777653
No 203
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.67 E-value=1.4e-07 Score=82.12 Aligned_cols=69 Identities=33% Similarity=0.756 Sum_probs=54.9
Q ss_pred CeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCc
Q psy11143 46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 124 (940)
Q Consensus 46 P~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~ 124 (940)
|.+..++ ..+.+|+.++|.|.+.+.|.+.+.|++++..+.... +. +.|.++..+|+|.|+|.+.+..+.
T Consensus 2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~-------~~-~~~~~~~~~~~g~y~C~~~~~~~~ 70 (80)
T PF13895_consen 2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ-------NG-LFIPNVSPEDSGNYTCRASNGSGS 70 (80)
T ss_dssp -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEES-------SE-EEESSEEGGGTEEEEEEEEETTEE
T ss_pred cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee-------ee-eeeeeeccccCEEEEEEEEeCCCC
Confidence 4444444 568999999999999999889999999998876221 11 578999999999999999996653
No 204
>smart00409 IG Immunoglobulin.
Probab=98.64 E-value=4.9e-07 Score=78.74 Aligned_cols=82 Identities=33% Similarity=0.676 Sum_probs=65.8
Q ss_pred CCcEEEecCCeEEEEEEeeccCCCeEEEEEC-CEeecCCCCeEEEeec--eEEEEcccccCCCeEEEEEEEeCCCceEEE
Q psy11143 52 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHD-GNSLDSDDHVTYEHDG--FVLVLNGVRESDAGVYNCVAQNSEGSAESV 128 (940)
Q Consensus 52 p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd-g~~I~~~~~~~~~~~g--s~L~I~~v~~~DsG~YtC~a~n~~g~~~~~ 128 (940)
|..+.+.+|+++.|.|.+.+.+.+.+.|+++ +..+............ ..|.|.+++.+|+|.|+|.+.+..+.....
T Consensus 1 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~ 80 (86)
T smart00409 1 PPSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST 80 (86)
T ss_pred CCcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE
Confidence 3456788999999999999888889999998 8887655555555443 568999999999999999999887776666
Q ss_pred EEEEE
Q psy11143 129 AMIRI 133 (940)
Q Consensus 129 ~~L~V 133 (940)
..|.|
T Consensus 81 ~~l~V 85 (86)
T smart00409 81 TTLTV 85 (86)
T ss_pred EEEEE
Confidence 55554
No 205
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.64 E-value=4.9e-07 Score=78.74 Aligned_cols=82 Identities=33% Similarity=0.676 Sum_probs=65.8
Q ss_pred CCcEEEecCCeEEEEEEeeccCCCeEEEEEC-CEeecCCCCeEEEeec--eEEEEcccccCCCeEEEEEEEeCCCceEEE
Q psy11143 52 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHD-GNSLDSDDHVTYEHDG--FVLVLNGVRESDAGVYNCVAQNSEGSAESV 128 (940)
Q Consensus 52 p~~~~V~eGesv~L~C~v~g~P~p~V~W~kd-g~~I~~~~~~~~~~~g--s~L~I~~v~~~DsG~YtC~a~n~~g~~~~~ 128 (940)
|..+.+.+|+++.|.|.+.+.+.+.+.|+++ +..+............ ..|.|.+++.+|+|.|+|.+.+..+.....
T Consensus 1 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~ 80 (86)
T smart00410 1 PPSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST 80 (86)
T ss_pred CCcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE
Confidence 3456788999999999999888889999998 8887655555555443 568999999999999999999887776666
Q ss_pred EEEEE
Q psy11143 129 AMIRI 133 (940)
Q Consensus 129 ~~L~V 133 (940)
..|.|
T Consensus 81 ~~l~V 85 (86)
T smart00410 81 TTLTV 85 (86)
T ss_pred EEEEE
Confidence 55554
No 206
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=98.64 E-value=0.00015 Score=96.55 Aligned_cols=358 Identities=16% Similarity=0.102 Sum_probs=215.2
Q ss_pred CCCeEEEEEE--EcCCceEEEEEEEEEeCCC---eEEeC-----------CCcEEEecCCeEEEEEEeeccCCCeEEEEE
Q psy11143 18 EHGGRYSCVA--GNPAGVYRGDLHVTVNAPP---IFIQR-----------PVSTTYSTGSTSRITCLVEGHPLPQMTWFH 81 (940)
Q Consensus 18 sDsG~Y~C~a--~n~~g~~~~~v~l~V~~pP---~~~~~-----------p~~~~V~eGesv~L~C~v~g~P~p~V~W~k 81 (940)
...|.|+... .|..|....+..+.|..+. .+... +....+..|..+.|.-.+......++.|..
T Consensus 1565 ~spGtYtVtLTvtN~~Gs~~~T~~i~V~~~I~GlqI~~~~~~gg~~~~~~~~~~~~~t~~~v~l~~~~~~GTnvsysW~~ 1644 (2740)
T TIGR00864 1565 RSVGTFNIIVTAENDVGAAQASIFLFVLQEIEGLQILGETAEGGGGGVQELDGCYFETNHTVQFHAGFKDGTNLSFSWNA 1644 (2740)
T ss_pred cCCceEEEEEEEecCCCccceeEEEEEeecccceEEEeecccccCCcccccccceeccCCEEEeeeccCCCCeeEEEEEE
Confidence 3578898855 4888887777777776543 22221 112345667778887666544555888855
Q ss_pred CCEeecCCCCeEEEeeceEEEEcccccCCCeEEE--EEEEeCCCceEEEEEEEEecccCCeeEecCCceeecCCCcEEEE
Q psy11143 82 DGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYN--CVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIP 159 (940)
Q Consensus 82 dg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~Yt--C~a~n~~g~~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~ 159 (940)
.+..-+ ....+...|. ...+...+.|.|. -.|.|..|....+..+.|.. +...+.+......+..|+.|.|.
T Consensus 1645 ~~~n~~--dg~~~~~tGk---~~~vt~~~pG~Y~VtL~aSN~vG~~t~s~~i~v~e-pi~~L~L~aS~~~aavn~~V~fs 1718 (2740)
T TIGR00864 1645 ILDNEP--DGPAFAGSGK---GAKLNPLEAGPCDIFLQAANLLGQATADCTIDFLE-PAGNLMLQASDNPAAVNALINLS 1718 (2740)
T ss_pred ecCCCC--CCccccccCc---eeEEecCCCceEEEEEEEeecccceeeEEEEEEEE-EcCceEEeccCCcccCCCeEEEE
Confidence 111000 0000112221 2224457789885 46678889888877777765 34455566666677889999998
Q ss_pred EEeCCCCCCeEEEeeCCeeccccCceEEeeeceEEEeecccCCCceEEE--EEEcCCcceeeeeeeeecCCCCeeeeCCC
Q psy11143 160 CKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRC--TASNLLGEDVAEGYLTVTGAPPIFIQRPV 237 (940)
Q Consensus 160 C~v~g~P~p~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~~~DsG~YtC--~a~N~~g~~s~s~~L~V~~~~p~~~~~p~ 237 (940)
-...+.....++|..++..-.....-... -+....|.|.. .|.|..|....+..+.|.....-+.+...
T Consensus 1719 ~~lt~GS~vty~W~~gdG~s~~~s~p~~t---------Htf~~~G~y~VtVta~N~vss~~~s~~V~VqepV~GL~i~~~ 1789 (2740)
T TIGR00864 1719 AELAEGSGLQYRWFLEEGDDLETSEPFMS---------HSFPSAGLHLVTMKAFNELGSANASEEVDVQEPISGLKIRAA 1789 (2740)
T ss_pred EEecCCCCcEEEEEECCCCCcccCCCceE---------EEccCCceEEEEEEEEccccccceeEEEEEEeccccceEecC
Confidence 87777778899999855422111111010 12345687755 45688887777777777643322222211
Q ss_pred e----eEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEE--EEEeCCCCcee
Q psy11143 238 S----TTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNC--VAQNSEGSAES 311 (940)
Q Consensus 238 ~----~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC--~A~N~~Gs~~~ 311 (940)
. ..+..|..+.|.-.+.......+.|..++..-..... . .....+.|.|+. .|.|..+....
T Consensus 1790 ~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~gk~---------v---~~Tf~~aG~ytV~L~AsN~vs~~~~ 1857 (2740)
T TIGR00864 1790 DAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSKMGKH---------A---CMTFPDAGTFAIRLNASNAVSGKSA 1857 (2740)
T ss_pred CCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCccccce---------e---EEecCCCeEEEEEEEEEcccCccee
Confidence 1 1455677787776643333347888877543111111 1 134567898875 57799988888
Q ss_pred EEEEEEeeccCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCee-eccCCcEEEeeeceEEEecCCCCCCeEE
Q psy11143 312 VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAE-FVEDRNHKIHRTGSLRLYNIGPQDSGLY 390 (940)
Q Consensus 312 s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~-i~~~~~~~i~~~~sL~I~~v~~~D~G~Y 390 (940)
+..+.|+. ..-.+........+..|+.++|++.....+...+.|...+.. ... ..+....+... ..|.|
T Consensus 1858 s~~~~VQe-~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~-------t~~~t~~HsY~--~~G~Y 1927 (2740)
T TIGR00864 1858 SREFFAEE-PIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVL-------QPGPRFSHSFP--RVDDH 1927 (2740)
T ss_pred eeeEEEEE-ecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCCCCceee-------cCCCeEEeecC--CCCcE
Confidence 88888864 222344445555778999999999988777889999876532 111 01111112222 34555
Q ss_pred --EEEEEeCCeeEEEEEEEEEecC
Q psy11143 391 --RCTASNLLGEDVAEGYLTVTGE 412 (940)
Q Consensus 391 --tC~A~N~~G~~~~s~~L~V~~~ 412 (940)
+..|.|..+...+...+.|.++
T Consensus 1928 ~VtV~A~N~Vs~~~a~~~V~Vle~ 1951 (2740)
T TIGR00864 1928 MVNLRAKNEVSCAQANLHIEVLEA 1951 (2740)
T ss_pred EEEEEEEeccceeeeeEEEEEEEe
Confidence 5688999999888888888665
No 207
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.63 E-value=1.1e-07 Score=84.58 Aligned_cols=67 Identities=16% Similarity=0.237 Sum_probs=54.6
Q ss_pred ceeecCCCeEEEEEeecC-cCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEE
Q psy11143 331 DMRAPAGSSVEIPCKPDG-EPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV 402 (940)
Q Consensus 331 ~~~v~~G~~vtL~C~v~g-~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~ 402 (940)
...+.+|++|+|.|.+.+ .|.+.+.|+|++..+... ...+.|.|.+++.+|+|.|+|.|.|..|...
T Consensus 8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~-----~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~ 75 (83)
T cd05753 8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS-----HSNSNLSIPQATLSDSGSYHCSGIIGSYDYS 75 (83)
T ss_pred cceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc-----CCCceEEECccCHHHCEEEEEEEEeCCceec
Confidence 346889999999999864 566799999999766421 1345899999999999999999999998544
No 208
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.62 E-value=8e-08 Score=87.05 Aligned_cols=71 Identities=27% Similarity=0.407 Sum_probs=61.6
Q ss_pred CceeecCCCeEEEEEe-ecCcCCCeEEEEeCCee-eccCCcEEEeeeceEEEecCCCCCCe-EEEEEEEeCCee
Q psy11143 330 FDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAE-FVEDRNHKIHRTGSLRLYNIGPQDSG-LYRCTASNLLGE 400 (940)
Q Consensus 330 ~~~~v~~G~~vtL~C~-v~g~P~p~i~W~k~g~~-i~~~~~~~i~~~~sL~I~~v~~~D~G-~YtC~A~N~~G~ 400 (940)
..+.+.+|+.+.|.|. ..|.|.|.|.|++++.. +..+.++.+..+|.|.|.++..+|+| .|.|.|+|....
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~ 84 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGLR 84 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEccccc
Confidence 4578899999999997 79999999999987754 44567888888899999999999999 799999997643
No 209
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.60 E-value=5.8e-07 Score=78.24 Aligned_cols=79 Identities=32% Similarity=0.635 Sum_probs=66.5
Q ss_pred ceeecCCCeEEEEEeecCcCCCeEEEEeC-CeeeccCCcEEEeee---ceEEEecCCCCCCeEEEEEEEeCCeeEEEEEE
Q psy11143 331 DMRAPAGSSVEIPCKPDGEPLPRISWSKD-EAEFVEDRNHKIHRT---GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY 406 (940)
Q Consensus 331 ~~~v~~G~~vtL~C~v~g~P~p~i~W~k~-g~~i~~~~~~~i~~~---~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~ 406 (940)
...+..|+++.|.|.+.+.+.+.+.|+++ +..+....++..... .+|.|.++..+|+|.|+|.+.|..|.....+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 45678999999999999988889999998 777764555555444 58999999999999999999999998888877
Q ss_pred EEE
Q psy11143 407 LTV 409 (940)
Q Consensus 407 L~V 409 (940)
|.|
T Consensus 83 l~V 85 (86)
T smart00410 83 LTV 85 (86)
T ss_pred EEE
Confidence 766
No 210
>smart00409 IG Immunoglobulin.
Probab=98.60 E-value=5.8e-07 Score=78.24 Aligned_cols=79 Identities=32% Similarity=0.635 Sum_probs=66.5
Q ss_pred ceeecCCCeEEEEEeecCcCCCeEEEEeC-CeeeccCCcEEEeee---ceEEEecCCCCCCeEEEEEEEeCCeeEEEEEE
Q psy11143 331 DMRAPAGSSVEIPCKPDGEPLPRISWSKD-EAEFVEDRNHKIHRT---GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY 406 (940)
Q Consensus 331 ~~~v~~G~~vtL~C~v~g~P~p~i~W~k~-g~~i~~~~~~~i~~~---~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~ 406 (940)
...+..|+++.|.|.+.+.+.+.+.|+++ +..+....++..... .+|.|.++..+|+|.|+|.+.|..|.....+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 45678999999999999988889999998 777764555555444 58999999999999999999999998888877
Q ss_pred EEE
Q psy11143 407 LTV 409 (940)
Q Consensus 407 L~V 409 (940)
|.|
T Consensus 83 l~V 85 (86)
T smart00409 83 LTV 85 (86)
T ss_pred EEE
Confidence 766
No 211
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.60 E-value=1e-07 Score=86.60 Aligned_cols=71 Identities=23% Similarity=0.379 Sum_probs=57.4
Q ss_pred ceeecCCCeEEEEEe-ecCcCCCeEEEEeCCeee--ccCCcEEEe-eeceEEEecCCCCCCeEEEEEEEeCCeeE
Q psy11143 331 DMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEF--VEDRNHKIH-RTGSLRLYNIGPQDSGLYRCTASNLLGED 401 (940)
Q Consensus 331 ~~~v~~G~~vtL~C~-v~g~P~p~i~W~k~g~~i--~~~~~~~i~-~~~sL~I~~v~~~D~G~YtC~A~N~~G~~ 401 (940)
...+.+|+.+.|.|. ..|.|.|.|.|++++..+ ..+.+..+. .+|.|.|.+++.+|+|.|+|.|+|..+..
T Consensus 12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence 356889999999996 568899999999998753 233444444 47999999999999999999999976543
No 212
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.59 E-value=3.6e-07 Score=82.71 Aligned_cols=78 Identities=21% Similarity=0.358 Sum_probs=60.6
Q ss_pred eeecCCCeEEEEEeecCcCCCeEEEEeCC--ee----eccCCcEEEeeeceEEEecCCCCCCeEEEEEEE-eCCeeEEEE
Q psy11143 332 MRAPAGSSVEIPCKPDGEPLPRISWSKDE--AE----FVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTAS-NLLGEDVAE 404 (940)
Q Consensus 332 ~~v~~G~~vtL~C~v~g~P~p~i~W~k~g--~~----i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~-N~~G~~~~s 404 (940)
+.+.+|++++|.|.. +.|.|.+.|++.+ .. +....++.. ..++|.|.++..+|+|.|+|.|. |..|.....
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~-~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~ 83 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH-TERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAK 83 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE-ecCeEEEeeCChhHCEEEEEEEEccCCeEEEEE
Confidence 457789999999997 4899999999843 11 112334443 45679999999999999999998 688888888
Q ss_pred EEEEEec
Q psy11143 405 GYLTVTG 411 (940)
Q Consensus 405 ~~L~V~~ 411 (940)
+.|+|..
T Consensus 84 ~~l~v~~ 90 (91)
T cd05871 84 YTLHVIE 90 (91)
T ss_pred EEEEEec
Confidence 8888864
No 213
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.59 E-value=2.2e-07 Score=83.12 Aligned_cols=75 Identities=19% Similarity=0.231 Sum_probs=57.7
Q ss_pred CCeEEEEEeecCcCCC--eEEEEeCCeeecc---CC--cEE----EeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEE
Q psy11143 337 GSSVEIPCKPDGEPLP--RISWSKDEAEFVE---DR--NHK----IHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG 405 (940)
Q Consensus 337 G~~vtL~C~v~g~P~p--~i~W~k~g~~i~~---~~--~~~----i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~ 405 (940)
|++++|.|.+.+.|.+ .+.|..++..... .. +.. ....++|.|.+++.+|+|.|+|.|.|..|....++
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 7899999999876654 8899887753311 01 111 11346899999999999999999999999999999
Q ss_pred EEEEec
Q psy11143 406 YLTVTG 411 (940)
Q Consensus 406 ~L~V~~ 411 (940)
.|.|.+
T Consensus 81 ~~~V~~ 86 (86)
T cd05862 81 IVIVHE 86 (86)
T ss_pred EEEEeC
Confidence 998863
No 214
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.55 E-value=2.2e-07 Score=84.47 Aligned_cols=71 Identities=15% Similarity=0.360 Sum_probs=52.6
Q ss_pred EEEecCCeEEEEEEeeccCCCeEEEEECCEee-cC-------------CCC--eEE---EeeceEEEEcccccCCCeEEE
Q psy11143 55 TTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL-DS-------------DDH--VTY---EHDGFVLVLNGVRESDAGVYN 115 (940)
Q Consensus 55 ~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I-~~-------------~~~--~~~---~~~gs~L~I~~v~~~DsG~Yt 115 (940)
+.+.+|++|+|.|.+++.+.+.|.|+++++.. .. ..+ .+. ......|+|.+++.+|+|+|.
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 46789999999999999899999999876332 11 011 111 112245899999999999999
Q ss_pred EEEEeCCCce
Q psy11143 116 CVAQNSEGSA 125 (940)
Q Consensus 116 C~a~n~~g~~ 125 (940)
|.+.|..++.
T Consensus 82 C~v~~~~~~~ 91 (94)
T cd07690 82 CEVEDKKEEV 91 (94)
T ss_pred EEECCccceE
Confidence 9999877654
No 215
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.53 E-value=5.4e-07 Score=81.50 Aligned_cols=80 Identities=20% Similarity=0.328 Sum_probs=55.5
Q ss_pred cEEEecCCeEEEEEEeeccCCCeEEEEECCE--eecC--CCCeEEEeeceEEEEcccccCCCeEEEEEEEe-CCCceEEE
Q psy11143 54 STTYSTGSTSRITCLVEGHPLPQMTWFHDGN--SLDS--DDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN-SEGSAESV 128 (940)
Q Consensus 54 ~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~--~I~~--~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n-~~g~~~~~ 128 (940)
.+.+.+|+++.|.|.. +.|.+.|.|||.+. .... ....++......|.|.+++.+|+|.|+|.+.+ ..+.....
T Consensus 5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~ 83 (91)
T cd05871 5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAK 83 (91)
T ss_pred EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEEEEE
Confidence 4567899999999996 47888999998432 2111 11223333444579999999999999999985 54544446
Q ss_pred EEEEEe
Q psy11143 129 AMIRIN 134 (940)
Q Consensus 129 ~~L~V~ 134 (940)
+.|+|.
T Consensus 84 ~~l~v~ 89 (91)
T cd05871 84 YTLHVI 89 (91)
T ss_pred EEEEEe
Confidence 666654
No 216
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.53 E-value=5e-07 Score=82.33 Aligned_cols=79 Identities=19% Similarity=0.397 Sum_probs=59.4
Q ss_pred CceeecCCCeEEEEEeecCcCCCeEEEEeCCeee--------ccCCcEEEe----eeceEEEecCCCCCCeEEEEEEEeC
Q psy11143 330 FDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEF--------VEDRNHKIH----RTGSLRLYNIGPQDSGLYRCTASNL 397 (940)
Q Consensus 330 ~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i--------~~~~~~~i~----~~~sL~I~~v~~~D~G~YtC~A~N~ 397 (940)
.++.+.+|++++|.|.+.+.|.+.+.|++.+..+ ..+.++.+. ...+|.|.+++.+|+|.|+|.+.+.
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 84 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTM 84 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecC
Confidence 4567899999999999999999999998633211 123455542 2347999999999999999999987
Q ss_pred CeeEEEEEEEEE
Q psy11143 398 LGEDVAEGYLTV 409 (940)
Q Consensus 398 ~G~~~~s~~L~V 409 (940)
. ..++++.|+|
T Consensus 85 ~-~~~~~~~~~v 95 (95)
T cd05717 85 P-VQTAKATVTV 95 (95)
T ss_pred C-CceEEEEEEC
Confidence 5 3466666654
No 217
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.51 E-value=2.4e-07 Score=84.01 Aligned_cols=72 Identities=18% Similarity=0.306 Sum_probs=57.5
Q ss_pred CCcEEEecCCeEEEEEE-eeccCCCeEEEEECCEe-ecCCCCeEEEeeceEEEEcccccCCCe-EEEEEEEeCCCc
Q psy11143 52 PVSTTYSTGSTSRITCL-VEGHPLPQMTWFHDGNS-LDSDDHVTYEHDGFVLVLNGVRESDAG-VYNCVAQNSEGS 124 (940)
Q Consensus 52 p~~~~V~eGesv~L~C~-v~g~P~p~V~W~kdg~~-I~~~~~~~~~~~gs~L~I~~v~~~DsG-~YtC~a~n~~g~ 124 (940)
.+.+.|.+|+.+.|.|. ..|.|.|.|.|++++.. +..+.++....+| .|.|.+|+.+|+| .|.|.|.|....
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~G-nL~fs~v~~~D~g~~Y~C~a~~~~~~ 84 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNG-NLYFANVEEQDSHPDYICHAHFPGLR 84 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCc-eEEEEEEehhhCCCCeEEEEEccccc
Confidence 46788999999999998 58999999999987654 3334444444454 5699999999999 899999987644
No 218
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.50 E-value=1.9e-07 Score=78.15 Aligned_cols=59 Identities=32% Similarity=0.655 Sum_probs=46.4
Q ss_pred CCeEEEEEEe-eccCCCeEEEEECCEeecCCCCeEEEeece----EEEEcccccCCCeEEEEEE
Q psy11143 60 GSTSRITCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDGF----VLVLNGVRESDAGVYNCVA 118 (940)
Q Consensus 60 Gesv~L~C~v-~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs----~L~I~~v~~~DsG~YtC~a 118 (940)
|++++|.|.+ .+.+...|.|++++..+...........+. .|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 777888999999988765443333332222 2899999999999999986
No 219
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.49 E-value=8.5e-07 Score=80.80 Aligned_cols=81 Identities=17% Similarity=0.338 Sum_probs=56.7
Q ss_pred CCcEEEecCCeEEEEEEeeccCCCeEEEEECCEee--------cCCCCeEEE---eeceEEEEcccccCCCeEEEEEEEe
Q psy11143 52 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL--------DSDDHVTYE---HDGFVLVLNGVRESDAGVYNCVAQN 120 (940)
Q Consensus 52 p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I--------~~~~~~~~~---~~gs~L~I~~v~~~DsG~YtC~a~n 120 (940)
++.+.+.+|++++|.|.+.+.+.+.+.|++.+..+ ....++... .....|.|.+++.+|+|.|+|.+..
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 83 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYT 83 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEec
Confidence 35678999999999999988888899998632211 112233331 1234689999999999999999987
Q ss_pred CCCceEEEEEEEE
Q psy11143 121 SEGSAESVAMIRI 133 (940)
Q Consensus 121 ~~g~~~~~~~L~V 133 (940)
... .+..+.|+|
T Consensus 84 ~~~-~~~~~~~~v 95 (95)
T cd05717 84 MPV-QTAKATVTV 95 (95)
T ss_pred CCC-ceEEEEEEC
Confidence 643 344554543
No 220
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.43 E-value=1e-06 Score=80.51 Aligned_cols=80 Identities=16% Similarity=0.306 Sum_probs=60.0
Q ss_pred cEEEecCCeEEEEEEe------ec-----cCCCeEEEEECCEeecCCC-----CeEEEeeceEEEEcccccCCCeEEEEE
Q psy11143 54 STTYSTGSTSRITCLV------EG-----HPLPQMTWFHDGNSLDSDD-----HVTYEHDGFVLVLNGVRESDAGVYNCV 117 (940)
Q Consensus 54 ~~~V~eGesv~L~C~v------~g-----~P~p~V~W~kdg~~I~~~~-----~~~~~~~gs~L~I~~v~~~DsG~YtC~ 117 (940)
...+.+|+++.|.|.. .+ .+...+.|||++..+.... ..|+...+..|.|.++..+|+|.|+|+
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~ 88 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCV 88 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEE
Confidence 3567899999999996 11 1234899999975544322 246677788889999999999999999
Q ss_pred EEeCCCceEEEEEEEE
Q psy11143 118 AQNSEGSAESVAMIRI 133 (940)
Q Consensus 118 a~n~~g~~~~~~~L~V 133 (940)
+.|.....+.+..|+|
T Consensus 89 ~rN~t~C~~~~i~l~V 104 (104)
T cd05896 89 LRNSTYCMKVSMSLTV 104 (104)
T ss_pred ECCCCcceEEEEEEEC
Confidence 9998876666655543
No 221
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.42 E-value=1.5e-06 Score=79.13 Aligned_cols=80 Identities=16% Similarity=0.221 Sum_probs=66.0
Q ss_pred ceeecCCCeEEEEEeecCcCCCe-EEEEeCCeeeccCCc--EEEe------eeceEEEecCCCCCCeEEEEEEEeCCeeE
Q psy11143 331 DMRAPAGSSVEIPCKPDGEPLPR-ISWSKDEAEFVEDRN--HKIH------RTGSLRLYNIGPQDSGLYRCTASNLLGED 401 (940)
Q Consensus 331 ~~~v~~G~~vtL~C~v~g~P~p~-i~W~k~g~~i~~~~~--~~i~------~~~sL~I~~v~~~D~G~YtC~A~N~~G~~ 401 (940)
.+.+.+|+++.|.|.++++|.|+ +.|.+++..+..... .... ..+.|.+..+..+|.|.|+|.|.|..++.
T Consensus 12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~ 91 (101)
T cd05860 12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA 91 (101)
T ss_pred eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence 46789999999999999999997 999998775533222 1111 23579999999999999999999999999
Q ss_pred EEEEEEEEe
Q psy11143 402 VAEGYLTVT 410 (940)
Q Consensus 402 ~~s~~L~V~ 410 (940)
+.++.|.|+
T Consensus 92 s~tF~l~v~ 100 (101)
T cd05860 92 SVTFNVYVN 100 (101)
T ss_pred EEEEEEEEe
Confidence 999999876
No 222
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.41 E-value=1.1e-06 Score=78.63 Aligned_cols=75 Identities=17% Similarity=0.279 Sum_probs=54.7
Q ss_pred CCeEEEEEEeeccC--CCeEEEEECCEeecCC---CCeEE-----EeeceEEEEcccccCCCeEEEEEEEeCCCceEEEE
Q psy11143 60 GSTSRITCLVEGHP--LPQMTWFHDGNSLDSD---DHVTY-----EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVA 129 (940)
Q Consensus 60 Gesv~L~C~v~g~P--~p~V~W~kdg~~I~~~---~~~~~-----~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~ 129 (940)
|+++.|.|.+.+.+ ...+.|.+.++..... ...+. ....+.|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 78999999998755 4478998877643211 11011 11235689999999999999999999888777777
Q ss_pred EEEEe
Q psy11143 130 MIRIN 134 (940)
Q Consensus 130 ~L~V~ 134 (940)
.|.|.
T Consensus 81 ~~~V~ 85 (86)
T cd05862 81 IVIVH 85 (86)
T ss_pred EEEEe
Confidence 77764
No 223
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.40 E-value=6.3e-07 Score=76.77 Aligned_cols=74 Identities=31% Similarity=0.632 Sum_probs=52.8
Q ss_pred CCeEEEcCCceeecCCCeEEEEEeecCcC-CCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEe
Q psy11143 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEP-LPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 396 (940)
Q Consensus 322 ~P~i~~~p~~~~v~~G~~vtL~C~v~g~P-~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N 396 (940)
+|.|...+.......+. ++|.|.+.+.| .+.|+|+.................++|.|.++..+|.|.|+|.|+|
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 46677766655444444 99999999998 7799999111111122233334566899999999999999999998
No 224
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.37 E-value=1.4e-06 Score=79.10 Aligned_cols=74 Identities=19% Similarity=0.338 Sum_probs=56.1
Q ss_pred cEEEecCCeEEEEEEe-e----ccCCCeEEEEECCEeecCCCC-eEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEE
Q psy11143 54 STTYSTGSTSRITCLV-E----GHPLPQMTWFHDGNSLDSDDH-VTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES 127 (940)
Q Consensus 54 ~~~V~eGesv~L~C~v-~----g~P~p~V~W~kdg~~I~~~~~-~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~ 127 (940)
.+.+.+|....|.|.- . ..+.++|+||||+.++..... .....++..|.|.++..+|+|.|+|.+.+..+...-
T Consensus 4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y 83 (95)
T cd05897 4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKY 83 (95)
T ss_pred eeEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEEE
Confidence 3457789999999973 2 346679999999999874432 222134456899999999999999999998776544
No 225
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.36 E-value=1.5e-06 Score=79.06 Aligned_cols=71 Identities=17% Similarity=0.263 Sum_probs=54.9
Q ss_pred eeecCCCeEEEEEee-c----CcCCCeEEEEeCCeeeccCC-cEEE-eeeceEEEecCCCCCCeEEEEEEEeCCeeEE
Q psy11143 332 MRAPAGSSVEIPCKP-D----GEPLPRISWSKDEAEFVEDR-NHKI-HRTGSLRLYNIGPQDSGLYRCTASNLLGEDV 402 (940)
Q Consensus 332 ~~v~~G~~vtL~C~v-~----g~P~p~i~W~k~g~~i~~~~-~~~i-~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~ 402 (940)
+.+.+|.+..|.|.- . ..+.|.++|+|++.++..+. ++.. ...+.|.|.++..+|+|.|+|.|.|.+|...
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~ 82 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKK 82 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence 456788999999972 2 34667999999999886543 3333 2345799999999999999999999876543
No 226
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.35 E-value=8.8e-07 Score=74.07 Aligned_cols=59 Identities=32% Similarity=0.661 Sum_probs=48.0
Q ss_pred CCeEEEEEEE-eeeCCCeEEEEECCeecCCCCceEEeecCeE----EEEeeeccCCCeEEEEEE
Q psy11143 244 GSTSRITCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV----LVLNGVRESDAGVYNCVA 302 (940)
Q Consensus 244 G~~v~L~C~v-~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~s----L~I~~v~~~DsG~YtC~A 302 (940)
|++++|.|.+ .+.+.+.+.|++++..+...........+.. |.|.++..+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 6778889999999987765544444433332 999999999999999986
No 227
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.34 E-value=4.6e-06 Score=76.01 Aligned_cols=82 Identities=20% Similarity=0.329 Sum_probs=65.9
Q ss_pred CeeEEecCCeEEEEEEEeeeCCCe-EEEEECCeecCCCCc--eEEeec-----CeEEEEeeeccCCCeEEEEEEEeCCCC
Q psy11143 237 VSTTYSTGSTSRITCLVEGHPLPQ-MTWFHDGNSLDSDDH--VTYEHD-----GFVLVLNGVRESDAGVYNCVAQNSEGS 308 (940)
Q Consensus 237 ~~~~v~~G~~v~L~C~v~G~P~p~-ItW~k~g~~l~~~~~--~~~~~~-----g~sL~I~~v~~~DsG~YtC~A~N~~Gs 308 (940)
....+.+|+.+.|.|.++++|+|+ +.|.+++..+..... ...... .+.|.+..++.+++|.|+|.|.|....
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence 456789999999999999999997 999999887643332 211111 135999999999999999999999999
Q ss_pred ceeEEEEEEe
Q psy11143 309 AESVAMIRIN 318 (940)
Q Consensus 309 ~~~s~~l~V~ 318 (940)
.+.++.|.|+
T Consensus 91 ~s~tF~l~v~ 100 (101)
T cd05860 91 ASVTFNVYVN 100 (101)
T ss_pred EEEEEEEEEe
Confidence 9888888764
No 228
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.34 E-value=1.5e-06 Score=79.06 Aligned_cols=70 Identities=19% Similarity=0.345 Sum_probs=52.6
Q ss_pred eeecCCCeEEEEEeecCcCCCeEEEEeCCeee-cc-------------CCcEEEee------eceEEEecCCCCCCeEEE
Q psy11143 332 MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEF-VE-------------DRNHKIHR------TGSLRLYNIGPQDSGLYR 391 (940)
Q Consensus 332 ~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i-~~-------------~~~~~i~~------~~sL~I~~v~~~D~G~Yt 391 (940)
+.+.+|++|+|.|.+.+.|.+.|.|++++... .. ..++.... ..+|+|.+++.+|+|+|.
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 35678999999999999999999999766322 11 11222111 236999999999999999
Q ss_pred EEEEeCCeeE
Q psy11143 392 CTASNLLGED 401 (940)
Q Consensus 392 C~A~N~~G~~ 401 (940)
|.|.|..+..
T Consensus 82 C~v~~~~~~~ 91 (94)
T cd07690 82 CEVEDKKEEV 91 (94)
T ss_pred EEECCccceE
Confidence 9999987754
No 229
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.31 E-value=3e-06 Score=74.34 Aligned_cols=65 Identities=17% Similarity=0.327 Sum_probs=49.1
Q ss_pred eEEEEEEee-ccCCCeEEEEECCEeecCCCCeE----EEeeceEEEEcccccCCCeEEEEEEEeCCCceE
Q psy11143 62 TSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVT----YEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE 126 (940)
Q Consensus 62 sv~L~C~v~-g~P~p~V~W~kdg~~I~~~~~~~----~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~ 126 (940)
.+.|+|.+. |+|++.|+|||++++|....... .....+.|.|.....+|.+.|+|+|.|..+...
T Consensus 1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~ 70 (80)
T cd05885 1 EVELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVSQ 70 (80)
T ss_pred CEEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCCC
Confidence 378999985 58999999999999996532111 011223579999999999999999999877643
No 230
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.30 E-value=3.8e-06 Score=77.98 Aligned_cols=81 Identities=21% Similarity=0.231 Sum_probs=59.2
Q ss_pred CCceeecCCCeEEEEEeecCcCCCeEEEEeCCe-----ee--------------ccCCcEEEeeeceEEEecCCCCCCeE
Q psy11143 329 PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEA-----EF--------------VEDRNHKIHRTGSLRLYNIGPQDSGL 389 (940)
Q Consensus 329 p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~-----~i--------------~~~~~~~i~~~~sL~I~~v~~~D~G~ 389 (940)
+.+..+.+|++|.|.|.....+...++|+|... .| ....|..+..+++|.|.+++.+|+|.
T Consensus 5 ~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~ 84 (105)
T cd05774 5 LVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGF 84 (105)
T ss_pred ccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEE
Confidence 444578899999999975433334999999631 11 02356667778999999999999999
Q ss_pred EEEEEEeCC-eeEEEEEEEEE
Q psy11143 390 YRCTASNLL-GEDVAEGYLTV 409 (940)
Q Consensus 390 YtC~A~N~~-G~~~~s~~L~V 409 (940)
|+|.+.|.. ......+.|.|
T Consensus 85 Y~~~v~~~~~~~~~~~v~l~V 105 (105)
T cd05774 85 YTLQTITTNFQVEQATVHLQV 105 (105)
T ss_pred EEEEEEeCCccEEEEEEEEEC
Confidence 999999987 45555555543
No 231
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.30 E-value=3.5e-06 Score=73.89 Aligned_cols=62 Identities=19% Similarity=0.369 Sum_probs=49.2
Q ss_pred EEEEEeec-CcCCCeEEEEeCCeeeccCC-----cEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeE
Q psy11143 340 VEIPCKPD-GEPLPRISWSKDEAEFVEDR-----NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 401 (940)
Q Consensus 340 vtL~C~v~-g~P~p~i~W~k~g~~i~~~~-----~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~ 401 (940)
+.|+|.+. |.|.+.|+|+|++.++.... .......++|.+.....+|.+.|+|+|.|..+..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 78999976 67889999999999885421 1122345679999999999999999999988853
No 232
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.27 E-value=1.4e-06 Score=74.50 Aligned_cols=74 Identities=31% Similarity=0.578 Sum_probs=50.5
Q ss_pred CCeEEeCCCcEEEecCCeEEEEEEeeccC-CCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEe
Q psy11143 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHP-LPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN 120 (940)
Q Consensus 45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P-~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n 120 (940)
+|.+...+.......+. +.|.|.+.+.+ .+.|+|+ +..................|.|.++..+|.|.|+|.|+|
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 36666666665555444 99999998877 7899999 221111111112223445689999999999999999986
No 233
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.27 E-value=4.6e-06 Score=74.15 Aligned_cols=77 Identities=22% Similarity=0.462 Sum_probs=57.9
Q ss_pred CcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEE
Q psy11143 53 VSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR 132 (940)
Q Consensus 53 ~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~ 132 (940)
...+|.+|+++.|.|...+. .+++.|+++|..+..+.+......| |.|..++.+|+|.|+|.+. ..|-....+.+.
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~G--LlI~~~~~~dsG~Y~C~s~-E~gf~~~~~~y~ 79 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDG--LLILVTSPEHSGTYRCYSE-EEGFQQLVASYS 79 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCC--CEEEECCHhhCEEEEEEEe-cCCCeEEEEEEE
Confidence 45789999999999999875 5599999999998765444443444 5799999999999999987 334444434443
Q ss_pred E
Q psy11143 133 I 133 (940)
Q Consensus 133 V 133 (940)
+
T Consensus 80 l 80 (85)
T cd05872 80 L 80 (85)
T ss_pred E
Confidence 3
No 234
>PHA03376 BARF1; Provisional
Probab=98.24 E-value=1.1e-05 Score=80.08 Aligned_cols=122 Identities=20% Similarity=0.307 Sum_probs=76.1
Q ss_pred cEEEecCCeEEEEEEee---ccCCCeEEEEECCE----ee-c----------CCCCeEEE----eeceEEEEcccccCCC
Q psy11143 54 STTYSTGSTSRITCLVE---GHPLPQMTWFHDGN----SL-D----------SDDHVTYE----HDGFVLVLNGVRESDA 111 (940)
Q Consensus 54 ~~~V~eGesv~L~C~v~---g~P~p~V~W~kdg~----~I-~----------~~~~~~~~----~~gs~L~I~~v~~~Ds 111 (940)
.+.+..|+.++|+|... ..+...|.|+|.+. .+ . ...+.+.. .+...|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 56678999999999975 22455899999421 11 0 01122222 2334589999999999
Q ss_pred eEEEEEEEeCCCceEEEEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCe
Q psy11143 112 GVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEA 177 (940)
Q Consensus 112 G~YtC~a~n~~g~~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~ 177 (940)
|+|+|.+..........-.|++.. +-.+.+.........-+..++.|.+.|.|.|.+.|..+..
T Consensus 100 GtY~C~fQkge~~~~k~ehLt~V~--~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~ 163 (221)
T PHA03376 100 GNYLCRMKLGETEVTKQEHLSVVK--PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEG 163 (221)
T ss_pred ceEEEEEEcCCCceeeeeeeeeee--cceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccC
Confidence 999999987654443333333321 1112222211112225678899998899999999988543
No 235
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.23 E-value=2.8e-06 Score=76.85 Aligned_cols=74 Identities=16% Similarity=0.302 Sum_probs=56.4
Q ss_pred CCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeC
Q psy11143 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNL 397 (940)
Q Consensus 322 ~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~ 397 (940)
.|.+...|. ..+..|++|+|.|... .+...+.|+|+|..............+.|.|.+++.+|+|.|+|.+.|.
T Consensus 2 kP~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 2 KPSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CCEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 466777664 4688999999999986 6777999999987543211111223457999999999999999999986
No 236
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.22 E-value=3e-06 Score=76.62 Aligned_cols=74 Identities=12% Similarity=0.308 Sum_probs=55.5
Q ss_pred CCeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeC
Q psy11143 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNS 121 (940)
Q Consensus 45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~ 121 (940)
.|.+...|. ..|.+|+.|+|+|... .+...+.|+|+|....... .........+.|.+|+.+|+|.|+|.+.+.
T Consensus 2 kP~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~-~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 2 KPSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK-PPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CCEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc-cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 466667765 4689999999999885 5667899999998654221 111123345799999999999999999876
No 237
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.19 E-value=8.6e-06 Score=71.97 Aligned_cols=72 Identities=21% Similarity=0.410 Sum_probs=50.8
Q ss_pred eEEEEEEeec-cCCCeEEEEECCEeecCCCCeEE-Eee------ceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEE
Q psy11143 62 TSRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTY-EHD------GFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133 (940)
Q Consensus 62 sv~L~C~v~g-~P~p~V~W~kdg~~I~~~~~~~~-~~~------gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V 133 (940)
.+.|+|.+.| +|.+.|+|+|+|+.+........ ..+ .+.|.|.....+|.|.|+|.|.|..........+++
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l 80 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL 80 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence 3689999987 68889999999998764321111 111 235778877888999999999998765555444443
No 238
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.17 E-value=9.4e-06 Score=72.14 Aligned_cols=78 Identities=23% Similarity=0.473 Sum_probs=61.6
Q ss_pred CeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEE
Q psy11143 237 VSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR 316 (940)
Q Consensus 237 ~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~ 316 (940)
...++..|+++.|.|...+. .+.+.|+++|..+..+.++.....| |.|..++..|+|.|.|.+. +.|-....+.+.
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~G--LlI~~~~~~dsG~Y~C~s~-E~gf~~~~~~y~ 79 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDG--LLILVTSPEHSGTYRCYSE-EEGFQQLVASYS 79 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCC--CEEEECCHhhCEEEEEEEe-cCCCeEEEEEEE
Confidence 45678899999999998875 6699999999999877666665555 7899999999999999986 555555544444
Q ss_pred Ee
Q psy11143 317 IN 318 (940)
Q Consensus 317 V~ 318 (940)
+.
T Consensus 80 l~ 81 (85)
T cd05872 80 LN 81 (85)
T ss_pred EE
Confidence 43
No 239
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.17 E-value=1.7e-05 Score=72.09 Aligned_cols=68 Identities=19% Similarity=0.279 Sum_probs=51.5
Q ss_pred CcEEEecCCeEEEEEEeeccCCCeEEEEECCEee--------cCCCCeEEEe---eceEEEEcccccCCCeEEEEEEEe
Q psy11143 53 VSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL--------DSDDHVTYEH---DGFVLVLNGVRESDAGVYNCVAQN 120 (940)
Q Consensus 53 ~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I--------~~~~~~~~~~---~gs~L~I~~v~~~DsG~YtC~a~n 120 (940)
+++++.+|++++|+|.+.+.....+.|++-+..+ ....++.... ....|.|.+++.+|+|.|.|.+..
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 5688999999999999988766678888765332 2334444332 233589999999999999999975
No 240
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.17 E-value=1.1e-05 Score=71.22 Aligned_cols=71 Identities=23% Similarity=0.474 Sum_probs=50.3
Q ss_pred EEEEEEEee-eCCCeEEEEECCeecCCCCce-EEeecC------eEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEE
Q psy11143 247 SRITCLVEG-HPLPQMTWFHDGNSLDSDDHV-TYEHDG------FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317 (940)
Q Consensus 247 v~L~C~v~G-~P~p~ItW~k~g~~l~~~~~~-~~~~~g------~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V 317 (940)
+.|.|.+.| +|.+.|+|+++|..+...... ....++ +.|.|.....+|.|.|+|.|.|..........+.+
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l 80 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL 80 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence 689999987 688899999999988643211 111222 24777777778889999999998765554444443
No 241
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.12 E-value=1.3e-05 Score=73.40 Aligned_cols=79 Identities=16% Similarity=0.280 Sum_probs=57.9
Q ss_pred eeEEecCCeEEEEEEEe------ee-----CCCeEEEEECCeecCCCCc-----eEEeecCeEEEEeeeccCCCeEEEEE
Q psy11143 238 STTYSTGSTSRITCLVE------GH-----PLPQMTWFHDGNSLDSDDH-----VTYEHDGFVLVLNGVRESDAGVYNCV 301 (940)
Q Consensus 238 ~~~v~~G~~v~L~C~v~------G~-----P~p~ItW~k~g~~l~~~~~-----~~~~~~g~sL~I~~v~~~DsG~YtC~ 301 (940)
...+.+|+.+.|.|..- ++ ....+.|+|++..+..... ..+...+..|.|.++..+|+|.|+|+
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~ 88 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCV 88 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEE
Confidence 35678999999999851 11 1337999999755543321 34555666799999999999999999
Q ss_pred EEeCCCCceeEEEEE
Q psy11143 302 AQNSEGSAESVAMIR 316 (940)
Q Consensus 302 A~N~~Gs~~~s~~l~ 316 (940)
+.|.......++.|+
T Consensus 89 ~rN~t~C~~~~i~l~ 103 (104)
T cd05896 89 LRNSTYCMKVSMSLT 103 (104)
T ss_pred ECCCCcceEEEEEEE
Confidence 999886666555544
No 242
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.10 E-value=1.8e-05 Score=73.80 Aligned_cols=73 Identities=18% Similarity=0.337 Sum_probs=54.1
Q ss_pred eCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEe------e--------cCCCCeEEEe----eceEEEEcccccCCC
Q psy11143 50 QRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNS------L--------DSDDHVTYEH----DGFVLVLNGVRESDA 111 (940)
Q Consensus 50 ~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~------I--------~~~~~~~~~~----~gs~L~I~~v~~~Ds 111 (940)
..|..+.+.+|++|+|.|.+.+.+...+.|||.... + ....++.+.. ....|.|.+++.+|+
T Consensus 3 q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds 82 (109)
T cd04983 3 QSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDS 82 (109)
T ss_pred ecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHC
Confidence 456778899999999999998777779999985311 0 0122333331 345689999999999
Q ss_pred eEEEEEEEeCC
Q psy11143 112 GVYNCVAQNSE 122 (940)
Q Consensus 112 G~YtC~a~n~~ 122 (940)
|.|.|.+.+..
T Consensus 83 G~Y~C~~~~~~ 93 (109)
T cd04983 83 AVYFCALSESG 93 (109)
T ss_pred EEEEEEEecCC
Confidence 99999998754
No 243
>PHA03376 BARF1; Provisional
Probab=98.10 E-value=3.6e-05 Score=76.50 Aligned_cols=122 Identities=20% Similarity=0.322 Sum_probs=77.1
Q ss_pred eeEEecCCeEEEEEEEe---eeCCCeEEEEECCe----ec-------------CCCCceEEe--ecCeEEEEeeeccCCC
Q psy11143 238 STTYSTGSTSRITCLVE---GHPLPQMTWFHDGN----SL-------------DSDDHVTYE--HDGFVLVLNGVRESDA 295 (940)
Q Consensus 238 ~~~v~~G~~v~L~C~v~---G~P~p~ItW~k~g~----~l-------------~~~~~~~~~--~~g~sL~I~~v~~~Ds 295 (940)
......|+.+.|+|... ..+.-.|.|+|.+. .+ +...+..+. .+..+|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 45567899999999764 22445899999432 11 111112221 2334599999999999
Q ss_pred eEEEEEEEeCCCCceeEEEEEEeeccCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCe
Q psy11143 296 GVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEA 361 (940)
Q Consensus 296 G~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~ 361 (940)
|+|+|...-..........+.+. .|-.+.+.......+.-...++.|.+.|+|.|.++|.-+..
T Consensus 100 GtY~C~fQkge~~~~k~ehLt~V--~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~ 163 (221)
T PHA03376 100 GNYLCRMKLGETEVTKQEHLSVV--KPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEG 163 (221)
T ss_pred ceEEEEEEcCCCceeeeeeeeee--ecceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccC
Confidence 99999998765444333333332 12223332222233446778999999999999999987643
No 244
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.08 E-value=3.2e-05 Score=70.36 Aligned_cols=67 Identities=18% Similarity=0.305 Sum_probs=53.2
Q ss_pred CceeecCCCeEEEEEeecCcCCCeEEEEeCCeee--------ccCCcEEEee-ec---eEEEecCCCCCCeEEEEEEEe
Q psy11143 330 FDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEF--------VEDRNHKIHR-TG---SLRLYNIGPQDSGLYRCTASN 396 (940)
Q Consensus 330 ~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i--------~~~~~~~i~~-~~---sL~I~~v~~~D~G~YtC~A~N 396 (940)
.++.+.+|++++|+|.+.+.....+.|++.+..+ ..+.|+.... ++ +|.|.+++.+|+|.|.|.+..
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 4578999999999999998877788888766432 3455666554 22 699999999999999999976
No 245
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.02 E-value=4.7e-05 Score=72.10 Aligned_cols=82 Identities=15% Similarity=0.303 Sum_probs=55.0
Q ss_pred CCCcEEEecCCeEEEEEEeecc----CCCeEEEE---------------ECCEeecCC-----CCeEEE----eeceEEE
Q psy11143 51 RPVSTTYSTGSTSRITCLVEGH----PLPQMTWF---------------HDGNSLDSD-----DHVTYE----HDGFVLV 102 (940)
Q Consensus 51 ~p~~~~V~eGesv~L~C~v~g~----P~p~V~W~---------------kdg~~I~~~-----~~~~~~----~~gs~L~ 102 (940)
.+..+.+..|+.++|.|..... +..+|.|. ++|...... .+..+. .....|.
T Consensus 4 ~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~ 83 (116)
T cd05879 4 TDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIV 83 (116)
T ss_pred ccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEE
Confidence 3456778999999999998653 33589993 344443211 133332 2234589
Q ss_pred EcccccCCCeEEEEEEEeCCCceEEEEEEE
Q psy11143 103 LNGVRESDAGVYNCVAQNSEGSAESVAMIR 132 (940)
Q Consensus 103 I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~ 132 (940)
|.+++.+|.|+|+|.+.|..+.......+.
T Consensus 84 I~nv~~sD~G~Y~C~v~n~p~~~~~~~~~~ 113 (116)
T cd05879 84 IHNLDYTDNGTFTCDVKNPPDIVGKSSQVT 113 (116)
T ss_pred EccCCcccCEEEEEEEEcCCCcCCceeEEE
Confidence 999999999999999999766433333333
No 246
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.02 E-value=2.5e-05 Score=72.55 Aligned_cols=81 Identities=20% Similarity=0.229 Sum_probs=57.6
Q ss_pred ecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCe-----ec----c----------ccCceEEeeeceEEEeecccCCC
Q psy11143 143 VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEA-----EF----V----------EDRNHKIHRTGSLRLYNIGPQDS 203 (940)
Q Consensus 143 ~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~-----~i----~----------~~~~~~~~~~~sL~I~~v~~~Ds 203 (940)
+.+.+..+.+|+++.|.|.....+...++|+|+.. .+ . ...+..+..+++|.|.+++.+|+
T Consensus 3 ie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~ 82 (105)
T cd05774 3 IELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDT 82 (105)
T ss_pred EeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccC
Confidence 44556678899999999976544444899999521 11 0 12455566678999999999999
Q ss_pred ceEEEEEEcCCc-ceeeeeee
Q psy11143 204 GLYRCTASNLLG-EDVAEGYL 223 (940)
Q Consensus 204 G~YtC~a~N~~g-~~s~s~~L 223 (940)
|.|+|.+.+... .......|
T Consensus 83 G~Y~~~v~~~~~~~~~~~v~l 103 (105)
T cd05774 83 GFYTLQTITTNFQVEQATVHL 103 (105)
T ss_pred EEEEEEEEeCCccEEEEEEEE
Confidence 999999998763 34444444
No 247
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.00 E-value=3.6e-05 Score=71.58 Aligned_cols=76 Identities=30% Similarity=0.526 Sum_probs=56.1
Q ss_pred CCCeEEEEEeecCcC------CCeEEEEeCC-----e-ee--ccCC----------cEEE----eeeceEEEecCCCCCC
Q psy11143 336 AGSSVEIPCKPDGEP------LPRISWSKDE-----A-EF--VEDR----------NHKI----HRTGSLRLYNIGPQDS 387 (940)
Q Consensus 336 ~G~~vtL~C~v~g~P------~p~i~W~k~g-----~-~i--~~~~----------~~~i----~~~~sL~I~~v~~~D~ 387 (940)
.|++|+|.|.....+ .+.|.|+|.. . .+ ..+. +... ..+.+|.|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 489999999987654 4599999862 1 11 0111 1111 1245799999999999
Q ss_pred eEEEEEEEeCCeeEEEEEEEEEec
Q psy11143 388 GLYRCTASNLLGEDVAEGYLTVTG 411 (940)
Q Consensus 388 G~YtC~A~N~~G~~~~s~~L~V~~ 411 (940)
|.|.|.+.+..+..+..+.|.|.+
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999999988888899998875
No 248
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.99 E-value=3e-05 Score=72.03 Aligned_cols=76 Identities=28% Similarity=0.510 Sum_probs=57.1
Q ss_pred CCCeEEEEEeecCcC------CCeEEEEeCCe------e-e-cc----------CCcEEEee----eceEEEecCCCCCC
Q psy11143 336 AGSSVEIPCKPDGEP------LPRISWSKDEA------E-F-VE----------DRNHKIHR----TGSLRLYNIGPQDS 387 (940)
Q Consensus 336 ~G~~vtL~C~v~g~P------~p~i~W~k~g~------~-i-~~----------~~~~~i~~----~~sL~I~~v~~~D~ 387 (940)
.|++|+|.|.....| ...|.|+|... . + .. ..++.+.. ..+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 489999999987653 34799998531 1 1 10 13444321 34799999999999
Q ss_pred eEEEEEEEeCCeeEEEEEEEEEec
Q psy11143 388 GLYRCTASNLLGEDVAEGYLTVTG 411 (940)
Q Consensus 388 G~YtC~A~N~~G~~~~s~~L~V~~ 411 (940)
|.|.|.+.+..|..+..+.|.|++
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEEE
Confidence 999999999999999999998875
No 249
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=97.97 E-value=2.9e-05 Score=69.92 Aligned_cols=72 Identities=29% Similarity=0.398 Sum_probs=52.9
Q ss_pred CCeEEEEEeecCcCCCeEEEEeCCeee-----c-------------cCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCC
Q psy11143 337 GSSVEIPCKPDGEPLPRISWSKDEAEF-----V-------------EDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLL 398 (940)
Q Consensus 337 G~~vtL~C~v~g~P~p~i~W~k~g~~i-----~-------------~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~ 398 (940)
|++|+|.|.....+...|.|++..... . ...+..+..+++|.|.+++.+|+|.|+|.+.+..
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~ 80 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN 80 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence 789999999887666699999865321 0 1234555567899999999999999999999876
Q ss_pred ee-EEEEEEEE
Q psy11143 399 GE-DVAEGYLT 408 (940)
Q Consensus 399 G~-~~~s~~L~ 408 (940)
|. ......|.
T Consensus 81 ~~~~~~~~~l~ 91 (92)
T cd05741 81 GVTENAKFFLR 91 (92)
T ss_pred CcEEEEEEEEE
Confidence 53 33344443
No 250
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=97.95 E-value=6.4e-05 Score=69.86 Aligned_cols=77 Identities=18% Similarity=0.390 Sum_probs=53.5
Q ss_pred cCCeEEEEEEeeccC------CCeEEEEECC-----E-ee--cCC--------CCeEEE-----eeceEEEEcccccCCC
Q psy11143 59 TGSTSRITCLVEGHP------LPQMTWFHDG-----N-SL--DSD--------DHVTYE-----HDGFVLVLNGVRESDA 111 (940)
Q Consensus 59 eGesv~L~C~v~g~P------~p~V~W~kdg-----~-~I--~~~--------~~~~~~-----~~gs~L~I~~v~~~Ds 111 (940)
.|+.|+|.|.....+ ...|.|+|.. . .+ ... .+.++. .....|+|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 489999999987643 4599999862 1 11 011 111221 1235689999999999
Q ss_pred eEEEEEEEeCCCceEEEEEEEEec
Q psy11143 112 GVYNCVAQNSEGSAESVAMIRING 135 (940)
Q Consensus 112 G~YtC~a~n~~g~~~~~~~L~V~~ 135 (940)
|.|.|.+.+..+.....+.|.|.+
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999998877666677777754
No 251
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.95 E-value=3.4e-05 Score=72.26 Aligned_cols=73 Identities=18% Similarity=0.356 Sum_probs=53.1
Q ss_pred EeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCE--eec--------------C--CCCeEEEe---eceEEEEcccc
Q psy11143 49 IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGN--SLD--------------S--DDHVTYEH---DGFVLVLNGVR 107 (940)
Q Consensus 49 ~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~--~I~--------------~--~~~~~~~~---~gs~L~I~~v~ 107 (940)
...|..+.+.+|++|+|.|.+.+ +...+.|||... ... . ..++.... ....|.|.+++
T Consensus 2 ~Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~ 80 (110)
T cd05899 2 TQSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAE 80 (110)
T ss_pred EECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCC
Confidence 34677888999999999999987 667899998532 100 0 12222221 23568999999
Q ss_pred cCCCeEEEEEEEeCC
Q psy11143 108 ESDAGVYNCVAQNSE 122 (940)
Q Consensus 108 ~~DsG~YtC~a~n~~ 122 (940)
.+|+|.|.|.+.+..
T Consensus 81 ~~Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 81 PEDSAVYLCASSLGG 95 (110)
T ss_pred hhhCEEEEEEeeCCC
Confidence 999999999998653
No 252
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.93 E-value=7.2e-05 Score=69.48 Aligned_cols=77 Identities=19% Similarity=0.354 Sum_probs=54.1
Q ss_pred cCCeEEEEEEeeccC------CCeEEEEECCE----e----ecC----------CCCeEEE---eeceEEEEcccccCCC
Q psy11143 59 TGSTSRITCLVEGHP------LPQMTWFHDGN----S----LDS----------DDHVTYE---HDGFVLVLNGVRESDA 111 (940)
Q Consensus 59 eGesv~L~C~v~g~P------~p~V~W~kdg~----~----I~~----------~~~~~~~---~~gs~L~I~~v~~~Ds 111 (940)
.|+.|+|.|.....| ...|.|+|... . +.. ..+..+. .....|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 489999999987653 34799998641 0 110 1122221 1134689999999999
Q ss_pred eEEEEEEEeCCCceEEEEEEEEec
Q psy11143 112 GVYNCVAQNSEGSAESVAMIRING 135 (940)
Q Consensus 112 G~YtC~a~n~~g~~~~~~~L~V~~ 135 (940)
|.|.|.+.+..+..+....|.|.+
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEEE
Confidence 999999999888777777777754
No 253
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=97.92 E-value=3.4e-05 Score=69.49 Aligned_cols=66 Identities=17% Similarity=0.314 Sum_probs=47.7
Q ss_pred CCeEEEEEEeeccCCCeEEEEECCEeecC------------------CCCeEEEeeceEEEEcccccCCCeEEEEEEEeC
Q psy11143 60 GSTSRITCLVEGHPLPQMTWFHDGNSLDS------------------DDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNS 121 (940)
Q Consensus 60 Gesv~L~C~v~g~P~p~V~W~kdg~~I~~------------------~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~ 121 (940)
|++|+|.|.....+...|.|+++...... ..+..+..+ ..|.|.+++.+|+|.|+|.+...
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~-~sL~I~~l~~~DsG~Y~c~v~~~ 79 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN-GSLLIQNLTKEDSGTYTLQIIST 79 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC-ceEEEccCCchhcEEEEEEEEcC
Confidence 78999999987666669999987633211 112222233 55799999999999999999987
Q ss_pred CCceE
Q psy11143 122 EGSAE 126 (940)
Q Consensus 122 ~g~~~ 126 (940)
.+...
T Consensus 80 ~~~~~ 84 (92)
T cd05741 80 NGVTE 84 (92)
T ss_pred CCcEE
Confidence 75433
No 254
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.90 E-value=4.5e-05 Score=71.08 Aligned_cols=72 Identities=19% Similarity=0.338 Sum_probs=54.6
Q ss_pred cCCceeecCCCeEEEEEeecCcCCCeEEEEeCCe---e---e--------ccCCcEEEee-----eceEEEecCCCCCCe
Q psy11143 328 KPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEA---E---F--------VEDRNHKIHR-----TGSLRLYNIGPQDSG 388 (940)
Q Consensus 328 ~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~---~---i--------~~~~~~~i~~-----~~sL~I~~v~~~D~G 388 (940)
.|..+.+.+|++|+|.|.+.+.+.+.+.|+|... . + ....++.+.. ..+|.|.+++.+|+|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG 83 (109)
T cd04983 4 SPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSA 83 (109)
T ss_pred cCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCE
Confidence 4556789999999999999988888999998431 0 0 1234555432 337999999999999
Q ss_pred EEEEEEEeCCe
Q psy11143 389 LYRCTASNLLG 399 (940)
Q Consensus 389 ~YtC~A~N~~G 399 (940)
.|.|.+.+..+
T Consensus 84 ~Y~C~~~~~~~ 94 (109)
T cd04983 84 VYFCALSESGG 94 (109)
T ss_pred EEEEEEecCCC
Confidence 99999997643
No 255
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.89 E-value=7.3e-05 Score=70.27 Aligned_cols=77 Identities=21% Similarity=0.405 Sum_probs=53.6
Q ss_pred cCCeEEEEEEeeccC------------CCeEEEEECC--E---eec---------C--CCCeEEEe-----eceEEEEcc
Q psy11143 59 TGSTSRITCLVEGHP------------LPQMTWFHDG--N---SLD---------S--DDHVTYEH-----DGFVLVLNG 105 (940)
Q Consensus 59 eGesv~L~C~v~g~P------------~p~V~W~kdg--~---~I~---------~--~~~~~~~~-----~gs~L~I~~ 105 (940)
.|++|+|.|...... .+.|.|+|.. . .+. . ..++.+.. ....|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 489999999986432 3589999842 1 110 0 11233322 456789999
Q ss_pred cccCCCeEEEEEEEeCCCceEEEEEEEEec
Q psy11143 106 VRESDAGVYNCVAQNSEGSAESVAMIRING 135 (940)
Q Consensus 106 v~~~DsG~YtC~a~n~~g~~~~~~~L~V~~ 135 (940)
++.+|+|+|+|.+.+..........|.|.+
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 999999999999997767666677777754
No 256
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.88 E-value=6.5e-05 Score=69.85 Aligned_cols=74 Identities=23% Similarity=0.440 Sum_probs=51.7
Q ss_pred EEeCCCcEEEecCCeEEEEEEeeccC-CCeEEEEECC--E---eec-------C--CCCeEEEe--eceEEEEcccccCC
Q psy11143 48 FIQRPVSTTYSTGSTSRITCLVEGHP-LPQMTWFHDG--N---SLD-------S--DDHVTYEH--DGFVLVLNGVRESD 110 (940)
Q Consensus 48 ~~~~p~~~~V~eGesv~L~C~v~g~P-~p~V~W~kdg--~---~I~-------~--~~~~~~~~--~gs~L~I~~v~~~D 110 (940)
+...|....+.+|++|+|.|.+.+.. ...+.|||.. + .+. . ..++.... ....|.|.+++.+|
T Consensus 3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~D 82 (106)
T cd04980 3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPED 82 (106)
T ss_pred EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHH
Confidence 34567788899999999999997654 5689999742 1 111 0 11222221 22458999999999
Q ss_pred CeEEEEEEEeC
Q psy11143 111 AGVYNCVAQNS 121 (940)
Q Consensus 111 sG~YtC~a~n~ 121 (940)
+|.|.|.+.+.
T Consensus 83 sg~Y~Ca~~~~ 93 (106)
T cd04980 83 AAVYYCQQYGT 93 (106)
T ss_pred CEEEEEEEeCC
Confidence 99999998653
No 257
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.87 E-value=7.3e-05 Score=70.29 Aligned_cols=76 Identities=28% Similarity=0.431 Sum_probs=56.0
Q ss_pred CCCeEEEEEeecCcC------------CCeEEEEeC--Ce--e-e---------cc--CCcEEEe------eeceEEEec
Q psy11143 336 AGSSVEIPCKPDGEP------------LPRISWSKD--EA--E-F---------VE--DRNHKIH------RTGSLRLYN 381 (940)
Q Consensus 336 ~G~~vtL~C~v~g~P------------~p~i~W~k~--g~--~-i---------~~--~~~~~i~------~~~sL~I~~ 381 (940)
.|++|+|.|.....+ .+.|.|+|- |. . + .. ..|+.+. .+.+|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 489999999987432 459999984 21 1 1 00 1244443 245899999
Q ss_pred CCCCCCeEEEEEEEeCCeeEEEEEEEEEec
Q psy11143 382 IGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411 (940)
Q Consensus 382 v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~ 411 (940)
++.+|+|+|.|.+.+..........|.|++
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 999999999999998888888888888875
No 258
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=97.85 E-value=9.7e-05 Score=67.79 Aligned_cols=73 Identities=22% Similarity=0.348 Sum_probs=50.7
Q ss_pred CCeEEEEEeecCcCC---CeEEEEeCCe--ee---------c------cCCcEEEee------eceEEEecCCCCCCeEE
Q psy11143 337 GSSVEIPCKPDGEPL---PRISWSKDEA--EF---------V------EDRNHKIHR------TGSLRLYNIGPQDSGLY 390 (940)
Q Consensus 337 G~~vtL~C~v~g~P~---p~i~W~k~g~--~i---------~------~~~~~~i~~------~~sL~I~~v~~~D~G~Y 390 (940)
|++|+|.|....... ..+.|+|... .+ . -.+|..+.. ..+|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 688999998753221 2688887541 11 0 012433321 24799999999999999
Q ss_pred EEEEEeCCeeEEEEEEEEE
Q psy11143 391 RCTASNLLGEDVAEGYLTV 409 (940)
Q Consensus 391 tC~A~N~~G~~~~s~~L~V 409 (940)
+|.+.|..+..+..+.|+|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999998888777777776
No 259
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.81 E-value=0.0011 Score=74.44 Aligned_cols=197 Identities=14% Similarity=0.190 Sum_probs=117.1
Q ss_pred CcccEEEECCCCCCCCeEEEEEEEcC---CceEEEEEEEEEeCCCeEEeCCCcEEEecCCeEEEEEEeecc-CCC--eEE
Q psy11143 5 RSSTELVISGVQREHGGRYSCVAGNP---AGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGH-PLP--QMT 78 (940)
Q Consensus 5 ~s~~tL~I~~v~~sDsG~Y~C~a~n~---~g~~~~~v~l~V~~pP~~~~~p~~~~V~eGesv~L~C~v~g~-P~p--~V~ 78 (940)
.+.-.|+|.+++..++|.|+=.+.+. .......++|.+..+|.+.+.+.. +.+|+...-.|.+..+ |+- .+.
T Consensus 286 p~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~P--VL~Ge~YkAtC~vA~YYPp~Svrlr 363 (566)
T PHA03269 286 TSDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGDP--VLLGNPYAAYCKVNKYYPPHSVIVK 363 (566)
T ss_pred CCccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCCc--cccCCCceEEEEeeeecCCCceEEE
Confidence 34567999999999999998766532 224455677777778877776655 7899999999999774 433 789
Q ss_pred EEECCEeecCCC---CeEEEeeceEEEEccccc-CC-Ce-----EEEEEEEeCCCce-EE--EEEEEEecccCCeeEecC
Q psy11143 79 WFHDGNSLDSDD---HVTYEHDGFVLVLNGVRE-SD-AG-----VYNCVAQNSEGSA-ES--VAMIRINGHRAPRLVVKP 145 (940)
Q Consensus 79 W~kdg~~I~~~~---~~~~~~~gs~L~I~~v~~-~D-sG-----~YtC~a~n~~g~~-~~--~~~L~V~~~~~P~~~~~p 145 (940)
|++||.++.... ..+...+|..-.++-++. ++ .+ ..+|.+.=..+.. .. ++...-.+.+.|.+.+..
T Consensus 364 Wf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~PtISm~F 443 (566)
T PHA03269 364 WTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPFPNVSIEI 443 (566)
T ss_pred EEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCccccCCeEEEEE
Confidence 999999887421 122234443323333322 22 34 4599886433322 22 344444444556555443
Q ss_pred CceeecCCCcEEEEEEeCCCCC--CeEEEeeCCeeccccCceEEe-----eeceEEEee---cccCC-CceEEEEEEc
Q psy11143 146 FDMRAPAGSSVEIPCKPDGEPL--PRISWSKDEAEFVEDRNHKIH-----RTGSLRLYN---IGPQD-SGLYRCTASN 212 (940)
Q Consensus 146 ~~~~v~~Ge~vtL~C~v~g~P~--p~ItW~k~g~~i~~~~~~~~~-----~~~sL~I~~---v~~~D-sG~YtC~a~N 212 (940)
..|. ..|.+.-.|. ..+.|..++...... ..... ..+...|.+ ++..| --+|+|....
T Consensus 444 -----edG~---AVCtA~CVP~~~V~l~WlVgD~p~~~~-~t~itG~C~ehPGLVNLRS~~pLS~~dgpveYTCrL~G 512 (566)
T PHA03269 444 -----IDGH---IVCLAKCVPRGVVHFNWWINDIPIEHE-NSEILGVCDNNKRFVNLQSSCDTSELDGPITYSCHLDG 512 (566)
T ss_pred -----eCCE---EEEecccccCCCceEEEEecCCCCCCc-cceeeccCCCCCCceeecccccccccCCceeEEEEEee
Confidence 2333 4577765554 479999877654332 22221 122355555 33333 2489999863
No 260
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=97.80 E-value=0.00012 Score=67.14 Aligned_cols=74 Identities=19% Similarity=0.409 Sum_probs=48.5
Q ss_pred CCeEEEEEEeeccC---CCeEEEEECCE--ee---------cC------CCCeEEE-----eeceEEEEcccccCCCeEE
Q psy11143 60 GSTSRITCLVEGHP---LPQMTWFHDGN--SL---------DS------DDHVTYE-----HDGFVLVLNGVRESDAGVY 114 (940)
Q Consensus 60 Gesv~L~C~v~g~P---~p~V~W~kdg~--~I---------~~------~~~~~~~-----~~gs~L~I~~v~~~DsG~Y 114 (940)
|++|+|.|...... ...|.|+|... .+ .. ..+..+. .....|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 78999999986322 23688887541 11 10 0122221 1225689999999999999
Q ss_pred EEEEEeCCCceEEEEEEEE
Q psy11143 115 NCVAQNSEGSAESVAMIRI 133 (940)
Q Consensus 115 tC~a~n~~g~~~~~~~L~V 133 (940)
+|.+.+..+..+....|+|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999987776555665554
No 261
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=97.80 E-value=0.00013 Score=69.07 Aligned_cols=73 Identities=18% Similarity=0.337 Sum_probs=51.6
Q ss_pred CCceeecCCCeEEEEEeecCc----CCCeEEEEe---------------CCeeeccC-----CcEEEe-----eeceEEE
Q psy11143 329 PFDMRAPAGSSVEIPCKPDGE----PLPRISWSK---------------DEAEFVED-----RNHKIH-----RTGSLRL 379 (940)
Q Consensus 329 p~~~~v~~G~~vtL~C~v~g~----P~p~i~W~k---------------~g~~i~~~-----~~~~i~-----~~~sL~I 379 (940)
+..+.+..|++++|.|..... +...|.|.+ +|...... .|..+. .+.+|.|
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I 84 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI 84 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence 445678899999999998653 335999943 23322211 244332 3458999
Q ss_pred ecCCCCCCeEEEEEEEeCCeeE
Q psy11143 380 YNIGPQDSGLYRCTASNLLGED 401 (940)
Q Consensus 380 ~~v~~~D~G~YtC~A~N~~G~~ 401 (940)
.+++.+|+|+|+|.+.|.-+..
T Consensus 85 ~nv~~sD~G~Y~C~v~n~p~~~ 106 (116)
T cd05879 85 HNLDYTDNGTFTCDVKNPPDIV 106 (116)
T ss_pred ccCCcccCEEEEEEEEcCCCcC
Confidence 9999999999999999976643
No 262
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=97.79 E-value=6.6e-05 Score=68.77 Aligned_cols=76 Identities=16% Similarity=0.357 Sum_probs=51.6
Q ss_pred ecCCeEEEEEEeec-cCCCeEEEEECCEeec--C-----------C----CCeEEEeeceEEEEcccccCCCeEEEEEEE
Q psy11143 58 STGSTSRITCLVEG-HPLPQMTWFHDGNSLD--S-----------D----DHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 119 (940)
Q Consensus 58 ~eGesv~L~C~v~g-~P~p~V~W~kdg~~I~--~-----------~----~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~ 119 (940)
..|++|+|.|.... .....|.|+|....+. . . .+..+..+...|+|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 37999999998754 4455899998643221 0 0 112222334668999999999999999999
Q ss_pred eCCCceEE-EEEEEE
Q psy11143 120 NSEGSAES-VAMIRI 133 (940)
Q Consensus 120 n~~g~~~~-~~~L~V 133 (940)
...|.... ...|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 88765433 444444
No 263
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.77 E-value=0.0017 Score=72.27 Aligned_cols=193 Identities=18% Similarity=0.245 Sum_probs=115.0
Q ss_pred cEEEECCCCCCCCeEEEEEEEcCCce--EEEEEEEEEeCCCeEEeCCCcEEEecCCeEEEEEEeecc-CCC--eEEEEEC
Q psy11143 8 TELVISGVQREHGGRYSCVAGNPAGV--YRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGH-PLP--QMTWFHD 82 (940)
Q Consensus 8 ~tL~I~~v~~sDsG~Y~C~a~n~~g~--~~~~v~l~V~~pP~~~~~p~~~~V~eGesv~L~C~v~g~-P~p--~V~W~kd 82 (940)
..|+|..++...+|.|+=...+..+. ..+.++|....+|.+.+.+.. +.+|+...-.|.+..+ |+- .+.||+|
T Consensus 182 ~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~P--vL~Ge~Y~AtC~va~YYPp~Sv~lrWf~n 259 (466)
T PHA03270 182 QRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPHA--VLEGEPFGATCVAANYYPGDRAAFRWFEG 259 (466)
T ss_pred ceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc--cccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 45999999999999999998876663 345566666678887776655 6899999999999774 432 7899999
Q ss_pred CEeecCCCCeEEE----eeceEEEEcccccCCCe------EEEEEEEeCCCce-EE--EEEEEEecccCCeeEecCCcee
Q psy11143 83 GNSLDSDDHVTYE----HDGFVLVLNGVRESDAG------VYNCVAQNSEGSA-ES--VAMIRINGHRAPRLVVKPFDMR 149 (940)
Q Consensus 83 g~~I~~~~~~~~~----~~gs~L~I~~v~~~DsG------~YtC~a~n~~g~~-~~--~~~L~V~~~~~P~~~~~p~~~~ 149 (940)
|.++......+.. .++.+ .++-++.++.+ ..+|.+.=..... .+ ++...-.+.+.|.+.+..
T Consensus 260 g~~V~~~~~i~~~~~~~~dGfs-~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY~~P~Isv~F---- 334 (466)
T PHA03270 260 GDEVFAPERVRTRVDAQRDGFS-ATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPRPTIEMEF---- 334 (466)
T ss_pred CccccCcceeeeeeEecCCCee-EEEEEeccccccCCCCCCceEEEEEccCCccceeecccccCccccCCeEEEEE----
Confidence 9988542222211 33322 44444444433 6799986433332 22 333443444455555443
Q ss_pred ecCCCcEEEEEEeCCCC-CCeEEEeeCCeeccccCceEEe-----eeceEEEeecc-c-CCCceEEEEEE
Q psy11143 150 APAGSSVEIPCKPDGEP-LPRISWSKDEAEFVEDRNHKIH-----RTGSLRLYNIG-P-QDSGLYRCTAS 211 (940)
Q Consensus 150 v~~Ge~vtL~C~v~g~P-~p~ItW~k~g~~i~~~~~~~~~-----~~~sL~I~~v~-~-~DsG~YtC~a~ 211 (940)
..|. ..|.+.-.| ...+.|..++............ ..+...|.+.- . ++..+|+|.+.
T Consensus 335 -~dG~---AVCtA~CVPegV~l~W~V~D~~~pa~~~~v~~G~C~~~PGlvNlrS~~plSd~~~eYTCrl~ 400 (466)
T PHA03270 335 -GGDE---AVCTAACVPEGVTLAWLLGADPAPAEKAAVAGGPCPGRPGLARVRSALPLSREHSEYTCRLV 400 (466)
T ss_pred -eCCE---EEEeccccCCCCEEEEEecCCCCCCccceeecccCCCCCCceeeecccccccCCceEEEEEe
Confidence 2333 346665444 3489998876555433221111 11223333321 1 12469999986
No 264
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=97.77 E-value=0.00015 Score=66.17 Aligned_cols=73 Identities=15% Similarity=0.355 Sum_probs=49.5
Q ss_pred CeEEEEEEeeccC---CCeEEEEECCEe----e-----------cCCCCeEEE--e---eceEEEEcccccCCCeEEEEE
Q psy11143 61 STSRITCLVEGHP---LPQMTWFHDGNS----L-----------DSDDHVTYE--H---DGFVLVLNGVRESDAGVYNCV 117 (940)
Q Consensus 61 esv~L~C~v~g~P---~p~V~W~kdg~~----I-----------~~~~~~~~~--~---~gs~L~I~~v~~~DsG~YtC~ 117 (940)
++|+|.|.....+ ...|.|+|.... + ......+.. . ....|+|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4789999987654 347999986421 0 111122222 1 245689999999999999999
Q ss_pred EEe-CCCceEEEEEEEE
Q psy11143 118 AQN-SEGSAESVAMIRI 133 (940)
Q Consensus 118 a~n-~~g~~~~~~~L~V 133 (940)
+.. ..|..+....|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 975 5666666666665
No 265
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=97.76 E-value=0.00017 Score=68.24 Aligned_cols=74 Identities=16% Similarity=0.355 Sum_probs=49.7
Q ss_pred CCCcEEEecCCeEEEEEEeeccC----CCeEEEEEC----CEe--e---cC------CCC--eEEE------eeceEEEE
Q psy11143 51 RPVSTTYSTGSTSRITCLVEGHP----LPQMTWFHD----GNS--L---DS------DDH--VTYE------HDGFVLVL 103 (940)
Q Consensus 51 ~p~~~~V~eGesv~L~C~v~g~P----~p~V~W~kd----g~~--I---~~------~~~--~~~~------~~gs~L~I 103 (940)
.|..+.+.+|++++|.|.....+ ...|.|++. +.. + .. ..+ .++. .....|.|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I 83 (115)
T cd05880 4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI 83 (115)
T ss_pred cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence 35678899999999999986433 236999752 111 1 00 001 1221 12345899
Q ss_pred cccccCCCeEEEEEEEeCCCc
Q psy11143 104 NGVRESDAGVYNCVAQNSEGS 124 (940)
Q Consensus 104 ~~v~~~DsG~YtC~a~n~~g~ 124 (940)
.+++.+|+|.|+|.+.|..+.
T Consensus 84 ~~v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 84 WQLQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred eeCChhhCEEEEEEEEeCCCC
Confidence 999999999999999987654
No 266
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.76 E-value=8.2e-05 Score=68.67 Aligned_cols=68 Identities=21% Similarity=0.445 Sum_probs=49.5
Q ss_pred EEecCCeEEEEEEeecc-CCCeEEEEECCE-----eec------------CCCCeEEEe----eceEEEEcccccCCCeE
Q psy11143 56 TYSTGSTSRITCLVEGH-PLPQMTWFHDGN-----SLD------------SDDHVTYEH----DGFVLVLNGVRESDAGV 113 (940)
Q Consensus 56 ~V~eGesv~L~C~v~g~-P~p~V~W~kdg~-----~I~------------~~~~~~~~~----~gs~L~I~~v~~~DsG~ 113 (940)
++.+|++|+|.|.+.+. +...+.|+|... .+. ...+..+.. ....|.|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 57899999999999876 667899998532 110 112222222 23468999999999999
Q ss_pred EEEEEEeCCC
Q psy11143 114 YNCVAQNSEG 123 (940)
Q Consensus 114 YtC~a~n~~g 123 (940)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999987765
No 267
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.76 E-value=0.00018 Score=68.05 Aligned_cols=74 Identities=22% Similarity=0.399 Sum_probs=49.5
Q ss_pred CCCcEEEecCCeEEEEEEeeccC----CCeEEEEECCE------eec----------CCC----CeEEE----eeceEEE
Q psy11143 51 RPVSTTYSTGSTSRITCLVEGHP----LPQMTWFHDGN------SLD----------SDD----HVTYE----HDGFVLV 102 (940)
Q Consensus 51 ~p~~~~V~eGesv~L~C~v~g~P----~p~V~W~kdg~------~I~----------~~~----~~~~~----~~gs~L~ 102 (940)
.|..+.+.+|+.|+|.|..+... ...|.|++... .+- ... +..+. .....|+
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 83 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV 83 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence 35677889999999999986432 24699986321 110 011 11111 1124589
Q ss_pred EcccccCCCeEEEEEEEeCCCc
Q psy11143 103 LNGVRESDAGVYNCVAQNSEGS 124 (940)
Q Consensus 103 I~~v~~~DsG~YtC~a~n~~g~ 124 (940)
|.+++.+|+|.|.|.+.+....
T Consensus 84 I~~v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 84 IHNLQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred EeeCCcccCEEEEEEEEeCCCC
Confidence 9999999999999999987554
No 268
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.75 E-value=0.0001 Score=69.05 Aligned_cols=72 Identities=22% Similarity=0.395 Sum_probs=53.1
Q ss_pred EcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCe--e---ec-------------cCCcEEEee----eceEEEecCCC
Q psy11143 327 VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEA--E---FV-------------EDRNHKIHR----TGSLRLYNIGP 384 (940)
Q Consensus 327 ~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~--~---i~-------------~~~~~~i~~----~~sL~I~~v~~ 384 (940)
..|..+.+.+|++|+|.|.+.+ +.+.+.|+|... . |. ...++.+.. ..+|.|.+++.
T Consensus 3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~ 81 (110)
T cd05899 3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP 81 (110)
T ss_pred ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh
Confidence 3456678999999999999988 778999998531 1 10 123444432 23799999999
Q ss_pred CCCeEEEEEEEeCCe
Q psy11143 385 QDSGLYRCTASNLLG 399 (940)
Q Consensus 385 ~D~G~YtC~A~N~~G 399 (940)
+|+|.|.|.+.+..|
T Consensus 82 ~Dsg~Y~Ca~~~~~~ 96 (110)
T cd05899 82 EDSAVYLCASSLGGG 96 (110)
T ss_pred hhCEEEEEEeeCCCC
Confidence 999999999987543
No 269
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=97.74 E-value=0.00027 Score=66.38 Aligned_cols=77 Identities=19% Similarity=0.432 Sum_probs=53.6
Q ss_pred cCCeEEEEEEeeccC----------CCeEEEEECC--Eee------------cC--CCCeEEE-----eeceEEEEcccc
Q psy11143 59 TGSTSRITCLVEGHP----------LPQMTWFHDG--NSL------------DS--DDHVTYE-----HDGFVLVLNGVR 107 (940)
Q Consensus 59 eGesv~L~C~v~g~P----------~p~V~W~kdg--~~I------------~~--~~~~~~~-----~~gs~L~I~~v~ 107 (940)
.|++|+|.|.....+ ...|.|+|.. ... .. ..+..+. .....|+|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 389999999987543 2579999852 111 00 0122221 123568999999
Q ss_pred cCCCeEEEEEEEeCCCceEEEEEEEEec
Q psy11143 108 ESDAGVYNCVAQNSEGSAESVAMIRING 135 (940)
Q Consensus 108 ~~DsG~YtC~a~n~~g~~~~~~~L~V~~ 135 (940)
.+|+|+|.|.+.......+..+.|.|.+
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 9999999999998777777777777764
No 270
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=97.73 E-value=0.00014 Score=66.70 Aligned_cols=78 Identities=13% Similarity=0.214 Sum_probs=52.9
Q ss_pred eEEeCCCcEEEecCCeEEEEEEeec-cCCCe--EEEEECCEeecCCCCeE----EEeeceEEEEcccccCCCeEEEEEEE
Q psy11143 47 IFIQRPVSTTYSTGSTSRITCLVEG-HPLPQ--MTWFHDGNSLDSDDHVT----YEHDGFVLVLNGVRESDAGVYNCVAQ 119 (940)
Q Consensus 47 ~~~~~p~~~~V~eGesv~L~C~v~g-~P~p~--V~W~kdg~~I~~~~~~~----~~~~gs~L~I~~v~~~DsG~YtC~a~ 119 (940)
.+.+.+....+.+|+.++|+|.+.| .|.+. |.|||++..+....... -......|.+.....+|.-.|+|+|.
T Consensus 3 ~V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~ 82 (100)
T cd05755 3 SVELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETE 82 (100)
T ss_pred eEEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEE
Confidence 4556666667899999999999976 67775 79999999986432111 01122345665444444448999999
Q ss_pred eCCCc
Q psy11143 120 NSEGS 124 (940)
Q Consensus 120 n~~g~ 124 (940)
+..+.
T Consensus 83 l~l~~ 87 (100)
T cd05755 83 LDLRP 87 (100)
T ss_pred eccCc
Confidence 87654
No 271
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=97.72 E-value=0.00016 Score=66.02 Aligned_cols=72 Identities=19% Similarity=0.327 Sum_probs=51.6
Q ss_pred CeEEEEEeecCcC---CCeEEEEeCCee----e-----------cc--CCcEEEe----eeceEEEecCCCCCCeEEEEE
Q psy11143 338 SSVEIPCKPDGEP---LPRISWSKDEAE----F-----------VE--DRNHKIH----RTGSLRLYNIGPQDSGLYRCT 393 (940)
Q Consensus 338 ~~vtL~C~v~g~P---~p~i~W~k~g~~----i-----------~~--~~~~~i~----~~~sL~I~~v~~~D~G~YtC~ 393 (940)
++|+|.|.....+ ...|.|+|.... + .. ..+..+. .+.+|.|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4799999987654 348999985421 0 11 1222222 245899999999999999999
Q ss_pred EEe-CCeeEEEEEEEEE
Q psy11143 394 ASN-LLGEDVAEGYLTV 409 (940)
Q Consensus 394 A~N-~~G~~~~s~~L~V 409 (940)
+.+ ..|.......|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 975 6788888888876
No 272
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.69 E-value=0.00014 Score=68.69 Aligned_cols=71 Identities=20% Similarity=0.456 Sum_probs=51.5
Q ss_pred eCCCcEEEecCCeEEEEEEeec--cCCCeEEEEEC--CEe----e--c-----------CCCCeEEEe----eceEEEEc
Q psy11143 50 QRPVSTTYSTGSTSRITCLVEG--HPLPQMTWFHD--GNS----L--D-----------SDDHVTYEH----DGFVLVLN 104 (940)
Q Consensus 50 ~~p~~~~V~eGesv~L~C~v~g--~P~p~V~W~kd--g~~----I--~-----------~~~~~~~~~----~gs~L~I~ 104 (940)
..|..+.+.+|++|+|.|.+.+ .+.+.+.|||. +.. + . ...++.+.. ....|+|.
T Consensus 3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~ 82 (116)
T cd04982 3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQ 82 (116)
T ss_pred CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEE
Confidence 3466778899999999999977 57779999984 211 0 0 122333332 23568999
Q ss_pred ccccCCCeEEEEEEEe
Q psy11143 105 GVRESDAGVYNCVAQN 120 (940)
Q Consensus 105 ~v~~~DsG~YtC~a~n 120 (940)
+++.+|+|.|.|.+..
T Consensus 83 ~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 83 NLEKEDSATYYCAYWE 98 (116)
T ss_pred ECCHHHCEEEEEEEec
Confidence 9999999999999864
No 273
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=97.68 E-value=0.00029 Score=66.16 Aligned_cols=76 Identities=32% Similarity=0.490 Sum_probs=55.9
Q ss_pred CCCeEEEEEeecCcC----------CCeEEEEeCC--ee---e---------c--cCCcEEEe------eeceEEEecCC
Q psy11143 336 AGSSVEIPCKPDGEP----------LPRISWSKDE--AE---F---------V--EDRNHKIH------RTGSLRLYNIG 383 (940)
Q Consensus 336 ~G~~vtL~C~v~g~P----------~p~i~W~k~g--~~---i---------~--~~~~~~i~------~~~sL~I~~v~ 383 (940)
.|++|+|.|.....+ ...|.|+|.. .. + . -.+|+.+. ...+|+|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 489999999987544 2579999852 11 0 0 01244432 23479999999
Q ss_pred CCCCeEEEEEEEeCCeeEEEEEEEEEec
Q psy11143 384 PQDSGLYRCTASNLLGEDVAEGYLTVTG 411 (940)
Q Consensus 384 ~~D~G~YtC~A~N~~G~~~~s~~L~V~~ 411 (940)
.+|+|+|.|.+.......+..+.|.|.+
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 9999999999999878888888888875
No 274
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.67 E-value=0.00012 Score=67.44 Aligned_cols=67 Identities=24% Similarity=0.392 Sum_probs=50.1
Q ss_pred eecCCCeEEEEEeecCc-CCCeEEEEeCCe-----ee------------ccCCcEEEee-----eceEEEecCCCCCCeE
Q psy11143 333 RAPAGSSVEIPCKPDGE-PLPRISWSKDEA-----EF------------VEDRNHKIHR-----TGSLRLYNIGPQDSGL 389 (940)
Q Consensus 333 ~v~~G~~vtL~C~v~g~-P~p~i~W~k~g~-----~i------------~~~~~~~i~~-----~~sL~I~~v~~~D~G~ 389 (940)
.+.+|++|+|.|.+.+. +...+.|+|... .+ ....++.+.. ..+|.|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 56789999999999876 667999998432 11 0123444332 2379999999999999
Q ss_pred EEEEEEeCCe
Q psy11143 390 YRCTASNLLG 399 (940)
Q Consensus 390 YtC~A~N~~G 399 (940)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999998765
No 275
>PHA03273 envelope glycoprotein C; Provisional
Probab=97.65 E-value=0.003 Score=71.10 Aligned_cols=194 Identities=18% Similarity=0.285 Sum_probs=113.1
Q ss_pred ccEEEECCCCCCCCeEEEEEEEcCCceEEEEEEEEE--eCCCeEEeCCCcEEEecCCeEEEEEEeecc-CCC--eEEEEE
Q psy11143 7 STELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV--NAPPIFIQRPVSTTYSTGSTSRITCLVEGH-PLP--QMTWFH 81 (940)
Q Consensus 7 ~~tL~I~~v~~sDsG~Y~C~a~n~~g~~~~~v~l~V--~~pP~~~~~p~~~~V~eGesv~L~C~v~g~-P~p--~V~W~k 81 (940)
...|+|..++..++|.|+=.+.+..+....+..++| ..+|.+.+.+.. +.+|+...-.|.+..+ |+- .+.|++
T Consensus 197 ~~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~P--vL~Ge~y~A~C~aa~YYPp~Sv~~rWf~ 274 (486)
T PHA03273 197 KFPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVHP--SLKGENYRAVCVVASYFPHSSVKLRWYK 274 (486)
T ss_pred ccceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc--cccCCCceEEEEeeeecCCCceEEEEEe
Confidence 356999999999999999776665554444444444 678887776655 7899999999999774 432 789999
Q ss_pred CCEeecCCCCe----EEEeeceEEEEcccccCC------CeEEEEEEEeCCCce-EE--EEEEEEecccCCeeEecCCce
Q psy11143 82 DGNSLDSDDHV----TYEHDGFVLVLNGVRESD------AGVYNCVAQNSEGSA-ES--VAMIRINGHRAPRLVVKPFDM 148 (940)
Q Consensus 82 dg~~I~~~~~~----~~~~~gs~L~I~~v~~~D------sG~YtC~a~n~~g~~-~~--~~~L~V~~~~~P~~~~~p~~~ 148 (940)
||.++...... ....+|....++-++..+ .=..+|.+.=..... .+ .+...-.+.+.|.+.+..
T Consensus 275 dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~Is~~F--- 351 (486)
T PHA03273 275 NAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPTVSVTV--- 351 (486)
T ss_pred CCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccccCccccCCeEEEEE---
Confidence 99998732221 111223222233232222 236799986443332 22 233333344455555443
Q ss_pred eecCCCcEEEEEEeCCCCC--CeEEEeeCCeeccccCc-eEE-----eeeceEEEee---cccCCCc--eEEEEEEc
Q psy11143 149 RAPAGSSVEIPCKPDGEPL--PRISWSKDEAEFVEDRN-HKI-----HRTGSLRLYN---IGPQDSG--LYRCTASN 212 (940)
Q Consensus 149 ~v~~Ge~vtL~C~v~g~P~--p~ItW~k~g~~i~~~~~-~~~-----~~~~sL~I~~---v~~~DsG--~YtC~a~N 212 (940)
..| ...|.+.-.|. ..+.|..++. .+.... ... ..-+...|.. +...| | +|+|.+..
T Consensus 352 --~~G---~AVCtA~CVP~egV~l~W~v~D~-~p~a~~~~~~tG~C~~~PglvNlrS~~pls~~d-gp~eYTCrl~G 421 (486)
T PHA03273 352 --EDG---DAVCTAKCVPSTGVFVSWSVNDH-LPGVPSQDMTTGVCSSHPGLVNMQSRRPLSEEN-GEREYSCIIEG 421 (486)
T ss_pred --eCC---EEEEecccccCCCeeEEEEccCC-CCCCcccccccccCCCCCCceeeeccccccccC-CceeEEEEEee
Confidence 233 34577776655 5899988663 211111 111 1122355555 33333 5 89999863
No 276
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=97.63 E-value=0.00018 Score=65.52 Aligned_cols=73 Identities=18% Similarity=0.308 Sum_probs=50.3
Q ss_pred CeEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCC--CeEEEeeceEEEEcccccCCCeEEEEEEEe
Q psy11143 46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD--HVTYEHDGFVLVLNGVRESDAGVYNCVAQN 120 (940)
Q Consensus 46 P~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~--~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n 120 (940)
|.+...| ...|.+|++|+|.|.... +...+.|+|+|....... ..........+.|.+++.+|+|.|.|....
T Consensus 2 P~l~a~p-~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 2 PFLSAHP-SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred CEEEecC-CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 4555544 456889999999998765 445899999987533210 000011233579999999999999999864
No 277
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.63 E-value=0.00038 Score=64.63 Aligned_cols=71 Identities=20% Similarity=0.464 Sum_probs=51.1
Q ss_pred CCCcEEEecCCeEEEEEEee-ccCCCeEEEEECCE-----eec---C-----------CCCeEEEee----ceEEEEccc
Q psy11143 51 RPVSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGN-----SLD---S-----------DDHVTYEHD----GFVLVLNGV 106 (940)
Q Consensus 51 ~p~~~~V~eGesv~L~C~v~-g~P~p~V~W~kdg~-----~I~---~-----------~~~~~~~~~----gs~L~I~~v 106 (940)
.|..+.+.+|+++.|.|... ......+.|++... .+. . ..+..+..+ ...|.|.++
T Consensus 7 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l 86 (114)
T PF07686_consen 7 PPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNL 86 (114)
T ss_dssp EESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSE
T ss_pred eCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCC
Confidence 45678899999999999998 44566899998322 111 0 112222222 245899999
Q ss_pred ccCCCeEEEEEEEeC
Q psy11143 107 RESDAGVYNCVAQNS 121 (940)
Q Consensus 107 ~~~DsG~YtC~a~n~ 121 (940)
+.+|+|.|.|.+...
T Consensus 87 ~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 87 QPSDSGTYFCQVSTS 101 (114)
T ss_dssp SGGGEEEEEEEEEES
T ss_pred CcCcCEEEEEEEEEC
Confidence 999999999999987
No 278
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=97.62 E-value=0.00018 Score=65.90 Aligned_cols=75 Identities=24% Similarity=0.349 Sum_probs=52.9
Q ss_pred cCCCeEEEEEeecC-cCCCeEEEEeCCeeec--c-----------C----CcEEEee-eceEEEecCCCCCCeEEEEEEE
Q psy11143 335 PAGSSVEIPCKPDG-EPLPRISWSKDEAEFV--E-----------D----RNHKIHR-TGSLRLYNIGPQDSGLYRCTAS 395 (940)
Q Consensus 335 ~~G~~vtL~C~v~g-~P~p~i~W~k~g~~i~--~-----------~----~~~~i~~-~~sL~I~~v~~~D~G~YtC~A~ 395 (940)
..|++|+|.|.... .....+.|+|....+. . . .++.+.. +.+|.|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 46999999998764 4445899998643211 0 0 1333333 3689999999999999999999
Q ss_pred eCCeeE-EEEEEEEE
Q psy11143 396 NLLGED-VAEGYLTV 409 (940)
Q Consensus 396 N~~G~~-~~s~~L~V 409 (940)
+..|.. ...+.|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 988754 44555554
No 279
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.62 E-value=0.00029 Score=62.06 Aligned_cols=61 Identities=18% Similarity=0.329 Sum_probs=44.2
Q ss_pred EEEEEEeec-cCCCeEEEEECCEeecCCCCeE-EE----eeceEEEEcccccCCCeEEEEEEEeCCC
Q psy11143 63 SRITCLVEG-HPLPQMTWFHDGNSLDSDDHVT-YE----HDGFVLVLNGVRESDAGVYNCVAQNSEG 123 (940)
Q Consensus 63 v~L~C~v~g-~P~p~V~W~kdg~~I~~~~~~~-~~----~~gs~L~I~~v~~~DsG~YtC~a~n~~g 123 (940)
+.|.|.+.| .|.+.|+|||+++++....... .. ...+.|.|......|...|+|.|.|..-
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l 68 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAV 68 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCccc
Confidence 689999976 7889999999999987543211 11 1224477876666677789999998764
No 280
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.61 E-value=0.00022 Score=66.25 Aligned_cols=72 Identities=17% Similarity=0.378 Sum_probs=51.6
Q ss_pred EEcCCceeecCCCeEEEEEeecCcC-CCeEEEEeCC--e---eec---------cCCcEEEeee---ceEEEecCCCCCC
Q psy11143 326 VVKPFDMRAPAGSSVEIPCKPDGEP-LPRISWSKDE--A---EFV---------EDRNHKIHRT---GSLRLYNIGPQDS 387 (940)
Q Consensus 326 ~~~p~~~~v~~G~~vtL~C~v~g~P-~p~i~W~k~g--~---~i~---------~~~~~~i~~~---~sL~I~~v~~~D~ 387 (940)
...|..+.+.+|++|+|.|.+.+.. ...+.|+|.. . .+. ...++..... ..|.|.+++.+|+
T Consensus 4 ~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Ds 83 (106)
T cd04980 4 TQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDA 83 (106)
T ss_pred EECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHC
Confidence 3446667889999999999998765 5689999742 1 111 1124444322 3699999999999
Q ss_pred eEEEEEEEeC
Q psy11143 388 GLYRCTASNL 397 (940)
Q Consensus 388 G~YtC~A~N~ 397 (940)
|.|.|.+.+.
T Consensus 84 g~Y~Ca~~~~ 93 (106)
T cd04980 84 AVYYCQQYGT 93 (106)
T ss_pred EEEEEEEeCC
Confidence 9999999764
No 281
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.58 E-value=0.00039 Score=61.27 Aligned_cols=61 Identities=18% Similarity=0.330 Sum_probs=43.9
Q ss_pred EEEEEEEee-eCCCeEEEEECCeecCCCCceE-EeecC----eEEEEeeeccCCCeEEEEEEEeCCC
Q psy11143 247 SRITCLVEG-HPLPQMTWFHDGNSLDSDDHVT-YEHDG----FVLVLNGVRESDAGVYNCVAQNSEG 307 (940)
Q Consensus 247 v~L~C~v~G-~P~p~ItW~k~g~~l~~~~~~~-~~~~g----~sL~I~~v~~~DsG~YtC~A~N~~G 307 (940)
++|.|.+.| .|.+.|+||+++.++....... ....+ ++|.+..-..+|...|+|.|.|+.-
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l 68 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAV 68 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCccc
Confidence 689999877 6888999999999997543211 11111 2377766666677789999999764
No 282
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=97.57 E-value=0.00037 Score=63.93 Aligned_cols=74 Identities=14% Similarity=0.330 Sum_probs=50.4
Q ss_pred EEcCCceeecCCCeEEEEEeecC-cCCCe--EEEEeCCeeeccCCcEE-----EeeeceEEEecCCCCCCe-EEEEEEEe
Q psy11143 326 VVKPFDMRAPAGSSVEIPCKPDG-EPLPR--ISWSKDEAEFVEDRNHK-----IHRTGSLRLYNIGPQDSG-LYRCTASN 396 (940)
Q Consensus 326 ~~~p~~~~v~~G~~vtL~C~v~g-~P~p~--i~W~k~g~~i~~~~~~~-----i~~~~sL~I~~v~~~D~G-~YtC~A~N 396 (940)
.+.+....+.+|+.++|.|.+.| .|.+. |.|+|++..+....... .....+|++.. .++|.| .|+|.|.+
T Consensus 5 ~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~-~r~D~g~~~sC~A~l 83 (100)
T cd05755 5 ELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITV-DREDHGANFSCETEL 83 (100)
T ss_pred EEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEec-chhhCCcEEEEEEEe
Confidence 34444456789999999999986 56665 79999998885432111 12234677654 455555 79999999
Q ss_pred CCee
Q psy11143 397 LLGE 400 (940)
Q Consensus 397 ~~G~ 400 (940)
..+.
T Consensus 84 ~l~~ 87 (100)
T cd05755 84 DLRP 87 (100)
T ss_pred ccCc
Confidence 7664
No 283
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.54 E-value=0.0068 Score=67.71 Aligned_cols=194 Identities=14% Similarity=0.284 Sum_probs=109.4
Q ss_pred EEEcccccCCCeEEEEEEEeCCCceEEEEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCCC-CCC--eEEEeeCCe
Q psy11143 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLP--RISWSKDEA 177 (940)
Q Consensus 101 L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~-P~p--~ItW~k~g~ 177 (940)
|.|..++...+|.|+-...+..+.......++|.....|.+.+.+. .+.+|+...-.|.+..+ |.- .+.|++|+.
T Consensus 184 L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~ 261 (466)
T PHA03270 184 LVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPH--AVLEGEPFGATCVAANYYPGDRAAFRWFEGGD 261 (466)
T ss_pred EEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCCc
Confidence 8999999999999999998877765555556676666677666554 47799999999999864 433 699999998
Q ss_pred eccccCce----EEeeeceEEEeecccCCCc------eEEEEEEcCCcce-eeeeeeeecCCCCeeeeCCC-eeEEecCC
Q psy11143 178 EFVEDRNH----KIHRTGSLRLYNIGPQDSG------LYRCTASNLLGED-VAEGYLTVTGAPPIFIQRPV-STTYSTGS 245 (940)
Q Consensus 178 ~i~~~~~~----~~~~~~sL~I~~v~~~DsG------~YtC~a~N~~g~~-s~s~~L~V~~~~p~~~~~p~-~~~v~~G~ 245 (940)
++...... ....++-..++-++.++.+ ..+|.+.=..... .....- . ..|.....|. .+.+..|.
T Consensus 262 ~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nA--a-~~P~VY~~P~Isv~F~dG~ 338 (466)
T PHA03270 262 EVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNA--T-GAPTVLPRPTIEMEFGGDE 338 (466)
T ss_pred cccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeecc--c-ccCccccCCeEEEEEeCCE
Confidence 77431111 1111222233333333322 6899986322221 111111 1 1122222222 22333443
Q ss_pred eEEEEEEEeeeCC-CeEEEEECCeecCCCCceEE-----eecCeEEEEee---eccCCCeEEEEEEEe
Q psy11143 246 TSRITCLVEGHPL-PQMTWFHDGNSLDSDDHVTY-----EHDGFVLVLNG---VRESDAGVYNCVAQN 304 (940)
Q Consensus 246 ~v~L~C~v~G~P~-p~ItW~k~g~~l~~~~~~~~-----~~~g~sL~I~~---v~~~DsG~YtC~A~N 304 (940)
- .|.+.-.|. ..+.|+-++...+....... ...+. ..|.+ ++. ....|+|.+.-
T Consensus 339 A---VCtA~CVPegV~l~W~V~D~~~pa~~~~v~~G~C~~~PGl-vNlrS~~plSd-~~~eYTCrl~G 401 (466)
T PHA03270 339 A---VCTAACVPEGVTLAWLLGADPAPAEKAAVAGGPCPGRPGL-ARVRSALPLSR-EHSEYTCRLVG 401 (466)
T ss_pred E---EEeccccCCCCEEEEEecCCCCCCccceeecccCCCCCCc-eeeeccccccc-CCceEEEEEee
Confidence 3 366554443 38999987766654332111 11122 33332 223 34689999863
No 284
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=97.52 E-value=0.00032 Score=62.02 Aligned_cols=63 Identities=21% Similarity=0.393 Sum_probs=42.8
Q ss_pred EEEEEEeec-cCCCeEEEEECCEeecCCCCeEEEeec------eEEEEcccccCCCeEEEEEEEeCCCce
Q psy11143 63 SRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYEHDG------FVLVLNGVRESDAGVYNCVAQNSEGSA 125 (940)
Q Consensus 63 v~L~C~v~g-~P~p~V~W~kdg~~I~~~~~~~~~~~g------s~L~I~~v~~~DsG~YtC~a~n~~g~~ 125 (940)
+.|.|.+.+ +|.+.|+|+++++.+...........+ +.|.+......+.+.|+|.|.|.....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS 71 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence 689999976 588899999999988643211111121 224555445566779999999976653
No 285
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.52 E-value=0.00036 Score=63.82 Aligned_cols=66 Identities=21% Similarity=0.339 Sum_probs=45.8
Q ss_pred EEecCCeEEEEEEeecc--CCCeEEEEECCE--ee---c---------CCCCeEEE--eeceEEEEcccccCCCeEEEEE
Q psy11143 56 TYSTGSTSRITCLVEGH--PLPQMTWFHDGN--SL---D---------SDDHVTYE--HDGFVLVLNGVRESDAGVYNCV 117 (940)
Q Consensus 56 ~V~eGesv~L~C~v~g~--P~p~V~W~kdg~--~I---~---------~~~~~~~~--~~gs~L~I~~v~~~DsG~YtC~ 117 (940)
.|.+|++|+|.|.+.+. ....+.|||... .. . ...++... .....|.|.+++.+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 57899999999998764 456799997431 11 0 01123322 2234589999999999999999
Q ss_pred EEeC
Q psy11143 118 AQNS 121 (940)
Q Consensus 118 a~n~ 121 (940)
+.+.
T Consensus 82 ~~~~ 85 (98)
T cd04984 82 VWDS 85 (98)
T ss_pred EccC
Confidence 8753
No 286
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=97.51 E-value=0.00057 Score=62.93 Aligned_cols=71 Identities=27% Similarity=0.479 Sum_probs=50.2
Q ss_pred eEEEEEeecCcC---CCeEEEEeCCe-----ee-----------cc--CCcEEEe-----eeceEEEecCCCCCCeEEEE
Q psy11143 339 SVEIPCKPDGEP---LPRISWSKDEA-----EF-----------VE--DRNHKIH-----RTGSLRLYNIGPQDSGLYRC 392 (940)
Q Consensus 339 ~vtL~C~v~g~P---~p~i~W~k~g~-----~i-----------~~--~~~~~i~-----~~~sL~I~~v~~~D~G~YtC 392 (940)
+|+|.|.....+ ...|.|+|... .+ .. .+|..+. .+.+|+|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 689999876443 33899998321 11 00 0233332 14589999999999999999
Q ss_pred EEEe-CCeeEEEEEEEEE
Q psy11143 393 TASN-LLGEDVAEGYLTV 409 (940)
Q Consensus 393 ~A~N-~~G~~~~s~~L~V 409 (940)
.+.+ +.|..++.+.|+|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9998 7887777888876
No 287
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=97.51 E-value=0.00033 Score=63.42 Aligned_cols=67 Identities=25% Similarity=0.455 Sum_probs=48.7
Q ss_pred ecCCeEEEEEEeecc-C-CCeEEEEECCEeecCCCC---eEEEeec-----eEEEEcccccCCCeEEEEEEEeCCCc
Q psy11143 58 STGSTSRITCLVEGH-P-LPQMTWFHDGNSLDSDDH---VTYEHDG-----FVLVLNGVRESDAGVYNCVAQNSEGS 124 (940)
Q Consensus 58 ~eGesv~L~C~v~g~-P-~p~V~W~kdg~~I~~~~~---~~~~~~g-----s~L~I~~v~~~DsG~YtC~a~n~~g~ 124 (940)
..|+.++|.|.+.|. | .+.|+|+++|..+..... .....++ +.|.|......|.|.|+|.|.+....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 478999999999996 6 368999999998865432 1111222 23566666667999999999987654
No 288
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.50 E-value=0.00065 Score=60.30 Aligned_cols=63 Identities=17% Similarity=0.402 Sum_probs=43.7
Q ss_pred EEEEEEeec-cCCCeEEEEECCEeecCCCCeEEE-eec------eEEEEcccccCCCeEEEEEEEeCCCce
Q psy11143 63 SRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYE-HDG------FVLVLNGVRESDAGVYNCVAQNSEGSA 125 (940)
Q Consensus 63 v~L~C~v~g-~P~p~V~W~kdg~~I~~~~~~~~~-~~g------s~L~I~~v~~~DsG~YtC~a~n~~g~~ 125 (940)
+.|+|.+.| +|.+.|+|+++|+.+......... .++ +.|.|......|...|+|.|.+.....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~ 72 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD 72 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence 689999987 688999999999988653321111 222 224454555667789999999986544
No 289
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=97.49 E-value=0.0005 Score=60.79 Aligned_cols=63 Identities=21% Similarity=0.391 Sum_probs=42.9
Q ss_pred EEEEEEEee-eCCCeEEEEECCeecCCCCceEEeecCe------EEEEeeeccCCCeEEEEEEEeCCCCc
Q psy11143 247 SRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYEHDGF------VLVLNGVRESDAGVYNCVAQNSEGSA 309 (940)
Q Consensus 247 v~L~C~v~G-~P~p~ItW~k~g~~l~~~~~~~~~~~g~------sL~I~~v~~~DsG~YtC~A~N~~Gs~ 309 (940)
+.|.|.+.+ +|.+.|+|++++..+..........++. .|.+.....++.+.|+|.|.|.....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS 71 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence 689999977 5889999999999886433111111221 24444445566779999999987654
No 290
>PHA03273 envelope glycoprotein C; Provisional
Probab=97.49 E-value=0.0059 Score=68.80 Aligned_cols=194 Identities=19% Similarity=0.324 Sum_probs=110.0
Q ss_pred EEEcccccCCCeEEEEEEEeCCCceEEEEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCCC-CCC--eEEEeeCCe
Q psy11143 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLP--RISWSKDEA 177 (940)
Q Consensus 101 L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~-P~p--~ItW~k~g~ 177 (940)
|.|..++...+|.|+-...+..+.......++|....+|.+.+.+. .+.+|+...-.|.+..+ |.- .+.|++++.
T Consensus 200 LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~ 277 (486)
T PHA03273 200 LTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVH--PSLKGENYRAVCVVASYFPHSSVKLRWYKNAK 277 (486)
T ss_pred eEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCCe
Confidence 8999999999999998887776766666667776666777666654 47899999999999864 433 699999999
Q ss_pred eccccCc----eEEe------eeceEEEeeccc-CCCceEEEEEEcCCcceeeeeeeeecCCCCeeeeCCC-eeEEecCC
Q psy11143 178 EFVEDRN----HKIH------RTGSLRLYNIGP-QDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPV-STTYSTGS 245 (940)
Q Consensus 178 ~i~~~~~----~~~~------~~~sL~I~~v~~-~DsG~YtC~a~N~~g~~s~s~~L~V~~~~p~~~~~p~-~~~v~~G~ 245 (940)
++..... .... ..++|.+..... +..=..+|.+.-.....+. ..+.-. ..|.+...|. .+....|.
T Consensus 278 ~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~-~RfsAt-~~P~Vy~~P~Is~~F~~G~ 355 (486)
T PHA03273 278 EVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSF-ARIAKA-GTPSVFVAPTVSVTVEDGD 355 (486)
T ss_pred eccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcce-eecccc-ccCccccCCeEEEEEeCCE
Confidence 8862111 1111 122344433222 2233789998632222111 111111 1122222222 22333443
Q ss_pred eEEEEEEEeeeCC--CeEEEEECCeecC--CCCceE----EeecCeEEEEee---eccCCCe--EEEEEEEe
Q psy11143 246 TSRITCLVEGHPL--PQMTWFHDGNSLD--SDDHVT----YEHDGFVLVLNG---VRESDAG--VYNCVAQN 304 (940)
Q Consensus 246 ~v~L~C~v~G~P~--p~ItW~k~g~~l~--~~~~~~----~~~~g~sL~I~~---v~~~DsG--~YtC~A~N 304 (940)
..|.+.-.|. ..+.|+.++ .++ ...... ....|. ..|.. +...| | .|+|.+..
T Consensus 356 ---AVCtA~CVP~egV~l~W~v~D-~~p~a~~~~~~tG~C~~~Pgl-vNlrS~~pls~~d-gp~eYTCrl~G 421 (486)
T PHA03273 356 ---AVCTAKCVPSTGVFVSWSVND-HLPGVPSQDMTTGVCSSHPGL-VNMQSRRPLSEEN-GEREYSCIIEG 421 (486)
T ss_pred ---EEEecccccCCCeeEEEEccC-CCCCCcccccccccCCCCCCc-eeeeccccccccC-CceeEEEEEee
Confidence 3477766665 589998776 222 111111 111222 45554 33443 5 89999874
No 291
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.46 E-value=0.00085 Score=62.23 Aligned_cols=81 Identities=25% Similarity=0.371 Sum_probs=55.8
Q ss_pred CCceeecCCCeEEEEEeec-CcCCCeEEEEeCCe-----eec--------------cCCcEEEeee-----ceEEEecCC
Q psy11143 329 PFDMRAPAGSSVEIPCKPD-GEPLPRISWSKDEA-----EFV--------------EDRNHKIHRT-----GSLRLYNIG 383 (940)
Q Consensus 329 p~~~~v~~G~~vtL~C~v~-g~P~p~i~W~k~g~-----~i~--------------~~~~~~i~~~-----~sL~I~~v~ 383 (940)
|..+.+.+|++++|.|... ......+.|++... .+. ...+..+..+ .+|.|.+++
T Consensus 8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~ 87 (114)
T PF07686_consen 8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQ 87 (114)
T ss_dssp ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSES
T ss_pred CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCC
Confidence 5567889999999999998 44556999998322 111 0123333332 269999999
Q ss_pred CCCCeEEEEEEEeC-CeeEEEEEEEEE
Q psy11143 384 PQDSGLYRCTASNL-LGEDVAEGYLTV 409 (940)
Q Consensus 384 ~~D~G~YtC~A~N~-~G~~~~s~~L~V 409 (940)
.+|+|.|.|.+... .+.......|+|
T Consensus 88 ~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 88 PSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp GGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred cCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 99999999999987 334444555554
No 292
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=97.46 E-value=0.00044 Score=62.91 Aligned_cols=71 Identities=27% Similarity=0.405 Sum_probs=50.6
Q ss_pred CeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeecc---CCcEEEeeeceEEEecCCCCCCeEEEEEEE
Q psy11143 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVE---DRNHKIHRTGSLRLYNIGPQDSGLYRCTAS 395 (940)
Q Consensus 323 P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~---~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~ 395 (940)
|.+...| ...+.+|++|+|.|.... +...+.|+|+|..... .....-.....+.|..++.+|+|.|.|...
T Consensus 2 P~l~a~p-~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 2 PFLSAHP-SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred CEEEecC-CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 5566655 356889999999998764 5568999998864221 011111123478999999999999999975
No 293
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.46 E-value=0.00071 Score=59.78 Aligned_cols=75 Identities=16% Similarity=0.273 Sum_probs=53.2
Q ss_pred EEEecCCeEEEEEEeeccC--CCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEE
Q psy11143 55 TTYSTGSTSRITCLVEGHP--LPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR 132 (940)
Q Consensus 55 ~~V~eGesv~L~C~v~g~P--~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~ 132 (940)
..+..|++++|+|...+.+ .++|+|+..+..... ....++..|.+..+...|+|+++|.+.......+....|.
T Consensus 9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~----~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~ 84 (88)
T cd07694 9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ----ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIK 84 (88)
T ss_pred CeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce----eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeEE
Confidence 3578999999999996544 459999976554321 1114556789999999999999999986644444444444
Q ss_pred E
Q psy11143 133 I 133 (940)
Q Consensus 133 V 133 (940)
|
T Consensus 85 V 85 (88)
T cd07694 85 V 85 (88)
T ss_pred E
Confidence 4
No 294
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.46 E-value=0.00077 Score=61.51 Aligned_cols=72 Identities=24% Similarity=0.398 Sum_probs=51.2
Q ss_pred CeEEEEEeecCcCC-CeEEEEeCCe----eec-------------cCCcEEEe----eeceEEEecCCCCCCeEEEEEE-
Q psy11143 338 SSVEIPCKPDGEPL-PRISWSKDEA----EFV-------------EDRNHKIH----RTGSLRLYNIGPQDSGLYRCTA- 394 (940)
Q Consensus 338 ~~vtL~C~v~g~P~-p~i~W~k~g~----~i~-------------~~~~~~i~----~~~sL~I~~v~~~D~G~YtC~A- 394 (940)
++|+|.|.....+. ..|.|.|... .+. -.+|..+. .+++|.|.+++.+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 36899999874332 3899988421 111 01233332 2568999999999999999997
Q ss_pred EeCCeeEEEEEEEEE
Q psy11143 395 SNLLGEDVAEGYLTV 409 (940)
Q Consensus 395 ~N~~G~~~~s~~L~V 409 (940)
..+.|+..++..|+|
T Consensus 81 tfP~G~~~~~~~l~~ 95 (96)
T cd05887 81 TFPLGNTQSSTTVTV 95 (96)
T ss_pred eCCCCCeeEEEEEEE
Confidence 558899999998887
No 295
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=97.44 E-value=0.00072 Score=62.27 Aligned_cols=72 Identities=19% Similarity=0.458 Sum_probs=48.0
Q ss_pred eEEEEEEeeccC---CCeEEEEECCE-----eec---C----------CCCeEEEe----eceEEEEcccccCCCeEEEE
Q psy11143 62 TSRITCLVEGHP---LPQMTWFHDGN-----SLD---S----------DDHVTYEH----DGFVLVLNGVRESDAGVYNC 116 (940)
Q Consensus 62 sv~L~C~v~g~P---~p~V~W~kdg~-----~I~---~----------~~~~~~~~----~gs~L~I~~v~~~DsG~YtC 116 (940)
.|+|.|.....+ ...|.|+|... .+. . ..+.++.. ....|+|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 689999986543 34899998421 111 0 12344442 24458999999999999999
Q ss_pred EEEe-CCCceEEEEEEEE
Q psy11143 117 VAQN-SEGSAESVAMIRI 133 (940)
Q Consensus 117 ~a~n-~~g~~~~~~~L~V 133 (940)
.+.+ +.|..+..+.|+|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9997 5666555666655
No 296
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.44 E-value=0.00089 Score=67.32 Aligned_cols=85 Identities=16% Similarity=0.321 Sum_probs=59.0
Q ss_pred CcEEEecCCeEEEEEEee-ccCCCeEEEEECCEeec----------CCCCeEEE-----eeceEEEEcccccCCCeEEEE
Q psy11143 53 VSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLD----------SDDHVTYE-----HDGFVLVLNGVRESDAGVYNC 116 (940)
Q Consensus 53 ~~~~V~eGesv~L~C~v~-g~P~p~V~W~kdg~~I~----------~~~~~~~~-----~~gs~L~I~~v~~~DsG~YtC 116 (940)
..++|.+|+.|+|.|... +...+.|+|+|..+.+. ..-..++. ...+.|+|.+++.+|+|.|+|
T Consensus 23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C 102 (189)
T PHA02987 23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTC 102 (189)
T ss_pred EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEE
Confidence 356789999999999985 55677999999743221 11111332 244668999999999999999
Q ss_pred EEEeC-CC-ceEEEEEEEEeccc
Q psy11143 117 VAQNS-EG-SAESVAMIRINGHR 137 (940)
Q Consensus 117 ~a~n~-~g-~~~~~~~L~V~~~~ 137 (940)
...-- .| ..+..+-|+|....
T Consensus 103 ~F~tfp~G~~~~gt~CLtVt~~~ 125 (189)
T PHA02987 103 IFNTLLSKNNEKGVVCLNVTTDS 125 (189)
T ss_pred EEEecCCCCCceeEEEEEEEchh
Confidence 98653 44 45557777776543
No 297
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=97.44 E-value=0.00096 Score=61.30 Aligned_cols=71 Identities=21% Similarity=0.403 Sum_probs=50.2
Q ss_pred eEEEEEeecCc-CCC---eEEEEeCC--e--ee--cc-----------CCcEEEe----eeceEEEecCCCCCCeEEEEE
Q psy11143 339 SVEIPCKPDGE-PLP---RISWSKDE--A--EF--VE-----------DRNHKIH----RTGSLRLYNIGPQDSGLYRCT 393 (940)
Q Consensus 339 ~vtL~C~v~g~-P~p---~i~W~k~g--~--~i--~~-----------~~~~~i~----~~~sL~I~~v~~~D~G~YtC~ 393 (940)
.|+|.|..... |.. +|.|.+.. . .+ .. ..|..+. .+++|.|.+++.+|+|.|+|.
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~ 81 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE 81 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence 58899997742 211 79998742 1 11 01 1233322 246899999999999999999
Q ss_pred EEe-CCeeEEEEEEEEE
Q psy11143 394 ASN-LLGEDVAEGYLTV 409 (940)
Q Consensus 394 A~N-~~G~~~~s~~L~V 409 (940)
+.| +.|..+..+.|+|
T Consensus 82 v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 82 FATFPTGNRESQLNLTV 98 (99)
T ss_pred EEeCCCCCeEEEEEEEE
Confidence 999 7898888888887
No 298
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.44 E-value=0.0004 Score=65.58 Aligned_cols=68 Identities=22% Similarity=0.446 Sum_probs=50.7
Q ss_pred CCceeecCCCeEEEEEeecC--cCCCeEEEEeC--Cee---ec--------------cCCcEEEee-----eceEEEecC
Q psy11143 329 PFDMRAPAGSSVEIPCKPDG--EPLPRISWSKD--EAE---FV--------------EDRNHKIHR-----TGSLRLYNI 382 (940)
Q Consensus 329 p~~~~v~~G~~vtL~C~v~g--~P~p~i~W~k~--g~~---i~--------------~~~~~~i~~-----~~sL~I~~v 382 (940)
|..+.+.+|++|+|.|.+.+ .+.+.+.|+|. +.. +. ...++.+.. ..+|.|.++
T Consensus 5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~ 84 (116)
T cd04982 5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL 84 (116)
T ss_pred CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence 45567889999999999987 67789999984 211 00 124555543 236999999
Q ss_pred CCCCCeEEEEEEEe
Q psy11143 383 GPQDSGLYRCTASN 396 (940)
Q Consensus 383 ~~~D~G~YtC~A~N 396 (940)
+.+|+|.|.|.+..
T Consensus 85 ~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 85 EKEDSATYYCAYWE 98 (116)
T ss_pred CHHHCEEEEEEEec
Confidence 99999999999875
No 299
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.44 E-value=0.00094 Score=62.59 Aligned_cols=76 Identities=21% Similarity=0.379 Sum_probs=51.7
Q ss_pred CCeEEEEEEeeccC-------CCeEEEEECC-----Eee----cC----------CCCeEEEe-----eceEEEEccccc
Q psy11143 60 GSTSRITCLVEGHP-------LPQMTWFHDG-----NSL----DS----------DDHVTYEH-----DGFVLVLNGVRE 108 (940)
Q Consensus 60 Gesv~L~C~v~g~P-------~p~V~W~kdg-----~~I----~~----------~~~~~~~~-----~gs~L~I~~v~~ 108 (940)
|++|+|.|..+-.| .+.|.|+|.. ..+ .. ..+..+.. ....|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 78999999965322 3689998741 111 01 11222221 235689999999
Q ss_pred CCCeEEEEEEEeCCCceEEEEEEEEec
Q psy11143 109 SDAGVYNCVAQNSEGSAESVAMIRING 135 (940)
Q Consensus 109 ~DsG~YtC~a~n~~g~~~~~~~L~V~~ 135 (940)
+|+|.|.|.+.......+....|.|.+
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 999999999999766666677777754
No 300
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=97.44 E-value=0.00076 Score=61.64 Aligned_cols=74 Identities=16% Similarity=0.328 Sum_probs=47.6
Q ss_pred CCeEEEEEEeeccCC-CeEEEEECCE----eec---C----------CCCeEEE---eeceEEEEcccccCCCeEEEEEE
Q psy11143 60 GSTSRITCLVEGHPL-PQMTWFHDGN----SLD---S----------DDHVTYE---HDGFVLVLNGVRESDAGVYNCVA 118 (940)
Q Consensus 60 Gesv~L~C~v~g~P~-p~V~W~kdg~----~I~---~----------~~~~~~~---~~gs~L~I~~v~~~DsG~YtC~a 118 (940)
|++|+|.|....... ..|.|+|... .+. . ..+..+. .....|.|.+++.+|+|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 789999999754332 3799998532 110 0 0011111 12345899999999999999998
Q ss_pred Ee-CCCceEEEEEEEE
Q psy11143 119 QN-SEGSAESVAMIRI 133 (940)
Q Consensus 119 ~n-~~g~~~~~~~L~V 133 (940)
.. +.|.....+-|+|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 74 4555555666665
No 301
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=97.43 E-value=0.0005 Score=62.24 Aligned_cols=67 Identities=25% Similarity=0.466 Sum_probs=48.2
Q ss_pred ecCCeEEEEEEEeee-CC-CeEEEEECCeecCCCCc---eEEeecCe-----EEEEeeeccCCCeEEEEEEEeCCCC
Q psy11143 242 STGSTSRITCLVEGH-PL-PQMTWFHDGNSLDSDDH---VTYEHDGF-----VLVLNGVRESDAGVYNCVAQNSEGS 308 (940)
Q Consensus 242 ~~G~~v~L~C~v~G~-P~-p~ItW~k~g~~l~~~~~---~~~~~~g~-----sL~I~~v~~~DsG~YtC~A~N~~Gs 308 (940)
..|+.++|.|.+.|+ |. ..|+|+++|..+..... .....++. .|.|......+.+.|+|.|.|....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 468899999999997 54 58999999998875542 11122222 2555555556999999999998764
No 302
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.42 E-value=0.011 Score=66.71 Aligned_cols=192 Identities=14% Similarity=0.193 Sum_probs=109.4
Q ss_pred eEEEeecccCCCceEEEEEEcCC-cc--eeeeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEEeeeCCC---eEEEEE
Q psy11143 192 SLRLYNIGPQDSGLYRCTASNLL-GE--DVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLP---QMTWFH 265 (940)
Q Consensus 192 sL~I~~v~~~DsG~YtC~a~N~~-g~--~s~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v~G~P~p---~ItW~k 265 (940)
.|.|.+++..++|.|+=.+.+.. +. ....+.+.+. .+|.+.+. ...+.+|+...-.|.+..+-++ .++|++
T Consensus 290 pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~y-r~PsVsV~--p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ 366 (566)
T PHA03269 290 SLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSY-KRPNITVI--GDPVLLGNPYAAYCKVNKYYPPHSVIVKWTS 366 (566)
T ss_pred ceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEe-cCCCcccc--CCccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 49999999999999987665322 22 3344455555 44444333 3457789999999999876444 789999
Q ss_pred CCeecCCCC---ceEEeecCeEEEEeeecc-C-CCe-----EEEEEEEeCCCCce-e--EEEEEEeeccCCeEEEcCCce
Q psy11143 266 DGNSLDSDD---HVTYEHDGFVLVLNGVRE-S-DAG-----VYNCVAQNSEGSAE-S--VAMIRINGHRAPRLVVKPFDM 332 (940)
Q Consensus 266 ~g~~l~~~~---~~~~~~~g~sL~I~~v~~-~-DsG-----~YtC~A~N~~Gs~~-~--s~~l~V~~~~~P~i~~~p~~~ 332 (940)
|+.++.... ......+|..-.++-+.. + .++ ..+|.+.-..+... . ++.....+..+|.+..
T Consensus 367 ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~PtISm----- 441 (566)
T PHA03269 367 NFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPFPNVSI----- 441 (566)
T ss_pred CCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCccccCCeEEE-----
Confidence 998887421 122234443222222222 1 233 45999875544332 2 2333334445666554
Q ss_pred eecCCCeEEEEEeecCcCC--CeEEEEeCCeeeccCCcEEEee-----eceEEEec---CCCCCC-eEEEEEEE
Q psy11143 333 RAPAGSSVEIPCKPDGEPL--PRISWSKDEAEFVEDRNHKIHR-----TGSLRLYN---IGPQDS-GLYRCTAS 395 (940)
Q Consensus 333 ~v~~G~~vtL~C~v~g~P~--p~i~W~k~g~~i~~~~~~~i~~-----~~sL~I~~---v~~~D~-G~YtC~A~ 395 (940)
.+..|. ..|.+...|. ..+.|.-++..... ....+.. .+-..|.+ ++.+|+ -.|+|...
T Consensus 442 ~FedG~---AVCtA~CVP~~~V~l~WlVgD~p~~~-~~t~itG~C~ehPGLVNLRS~~pLS~~dgpveYTCrL~ 511 (566)
T PHA03269 442 EIIDGH---IVCLAKCVPRGVVHFNWWINDIPIEH-ENSEILGVCDNNKRFVNLQSSCDTSELDGPITYSCHLD 511 (566)
T ss_pred EEeCCE---EEEecccccCCCceEEEEecCCCCCC-ccceeeccCCCCCCceeecccccccccCCceeEEEEEe
Confidence 333343 4577777776 38999877655322 2222222 22334444 333432 35999864
No 303
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=97.41 E-value=0.0011 Score=62.60 Aligned_cols=74 Identities=18% Similarity=0.431 Sum_probs=50.3
Q ss_pred CCCeeEEecCCeEEEEEEEeeeC----CCeEEEEEC----Cee--c---C------CC----CceEEe----ecCeEEEE
Q psy11143 235 RPVSTTYSTGSTSRITCLVEGHP----LPQMTWFHD----GNS--L---D------SD----DHVTYE----HDGFVLVL 287 (940)
Q Consensus 235 ~p~~~~v~~G~~v~L~C~v~G~P----~p~ItW~k~----g~~--l---~------~~----~~~~~~----~~g~sL~I 287 (940)
.+..+.+.+|++++|.|.....+ ...|.|++. +.+ + . .. .++.+. ....+|.|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I 83 (115)
T cd05880 4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI 83 (115)
T ss_pred cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence 45677889999999999976543 236999752 111 1 0 01 122221 12345999
Q ss_pred eeeccCCCeEEEEEEEeCCCC
Q psy11143 288 NGVRESDAGVYNCVAQNSEGS 308 (940)
Q Consensus 288 ~~v~~~DsG~YtC~A~N~~Gs 308 (940)
.+++.+|+|.|+|.+.|..+.
T Consensus 84 ~~v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 84 WQLQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred eeCChhhCEEEEEEEEeCCCC
Confidence 999999999999999987664
No 304
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.41 E-value=0.0063 Score=67.40 Aligned_cols=199 Identities=16% Similarity=0.255 Sum_probs=111.0
Q ss_pred CCCcccEEEECCCCCCCCeEEEEEEEcCCce--EEEEEEEEE-eCCCeEEeCCCcEEEecCCeEEEEEEeecc-CCC--e
Q psy11143 3 DRRSSTELVISGVQREHGGRYSCVAGNPAGV--YRGDLHVTV-NAPPIFIQRPVSTTYSTGSTSRITCLVEGH-PLP--Q 76 (940)
Q Consensus 3 ~~~s~~tL~I~~v~~sDsG~Y~C~a~n~~g~--~~~~v~l~V-~~pP~~~~~p~~~~V~eGesv~L~C~v~g~-P~p--~ 76 (940)
++.+.-.|.|.+++..|+|.|+....+.... ..+.+.+.| +.||.+.+.+.. +.+|+...-.|.+..+ |+- .
T Consensus 202 ktt~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~P--VL~Ge~YkAtC~vAnYYPP~Svr 279 (490)
T PHA03271 202 KTTNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAPP--VLSGENYKASCIVRHFYPPGSVY 279 (490)
T ss_pred cccceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCCc--cccCCCceEEEEeeeecCCCceE
Confidence 3456778999999999999887666654432 223333333 456767666555 6799999999999874 433 7
Q ss_pred EEEEECCEeecCCCC--eEE---E-eeceEEEEcccccCCCe-----EEEEEEEeCCCceEE--EEEEEEecccCCeeEe
Q psy11143 77 MTWFHDGNSLDSDDH--VTY---E-HDGFVLVLNGVRESDAG-----VYNCVAQNSEGSAES--VAMIRINGHRAPRLVV 143 (940)
Q Consensus 77 V~W~kdg~~I~~~~~--~~~---~-~~gs~L~I~~v~~~DsG-----~YtC~a~n~~g~~~~--~~~L~V~~~~~P~~~~ 143 (940)
+.|++||.++..... ... . .++.+ .+..+...+++ ..+|.+.=..+.... .+...-.+.+.|.+.+
T Consensus 280 lrWf~nG~~V~~~~~rdt~~~w~d~~~g~S-~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~rnAaatP~VY~~P~ISv 358 (490)
T PHA03271 280 VSWRQNGNIATPRKDRDGSFWWFESGRGAT-LVSTITLGNSGIDPPPKISCLVAWKQGDMISTTNATAIPTVYHHPRISL 358 (490)
T ss_pred EEEEeCCccccCccccceeEEEecCCCcee-EEEEEEcccccCCCCCCceEEEEEccCCceeeeecccCCccccCCeEEE
Confidence 899999988754321 111 1 11212 22333232333 789998644332222 3333333334455544
Q ss_pred cCCceeecCCCcEEEEEEeCCCC-CCeEEEeeCCeeccccCce------EEeeeceEEEee-cccCCC---ceEEEEEEc
Q psy11143 144 KPFDMRAPAGSSVEIPCKPDGEP-LPRISWSKDEAEFVEDRNH------KIHRTGSLRLYN-IGPQDS---GLYRCTASN 212 (940)
Q Consensus 144 ~p~~~~v~~Ge~vtL~C~v~g~P-~p~ItW~k~g~~i~~~~~~------~~~~~~sL~I~~-v~~~Ds---G~YtC~a~N 212 (940)
. ...|+ -.|.+.-.| ...+.|.-++...+..... .....+...|.+ ...+|. -.|+|.+..
T Consensus 359 ~-----FedG~---AVCtA~CVP~gV~lrWlVgD~p~pn~t~d~~itGvC~erPGlVNLrS~lPlSd~dgpveYTCrL~G 430 (490)
T PHA03271 359 A-----FKDGY---AICTIECVPSGITVRWLVHDEPQPNTTYDTVVTGLCRTIDRHRNLISRIPVQDNWQKTKYTCRLIG 430 (490)
T ss_pred E-----EeCCE---EEEeccccCCCcEEEEEecCCCCCCcccccccccccCCCCCceeeeccCCchhcCCceeEEEEEee
Confidence 3 33343 346655433 3489998876554322110 011123345554 333433 489999863
No 305
>KOG1480|consensus
Probab=97.39 E-value=9.6e-05 Score=86.76 Aligned_cols=179 Identities=21% Similarity=0.329 Sum_probs=111.8
Q ss_pred CCeeEecCCceeecCCCcEEEEEEeCCCCCC----eEEEeeCCeecc--ccCce--EEeeeceEEEeecccCCCc---eE
Q psy11143 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLP----RISWSKDEAEFV--EDRNH--KIHRTGSLRLYNIGPQDSG---LY 206 (940)
Q Consensus 138 ~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p----~ItW~k~g~~i~--~~~~~--~~~~~~sL~I~~v~~~DsG---~Y 206 (940)
.|.++..|.+..+..|..+.|.|.+...+.. .-.|........ ..+.. .....-.+.|.....++.+ .|
T Consensus 24 l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~d~ 103 (909)
T KOG1480|consen 24 LPHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPEDY 103 (909)
T ss_pred cceeeecCCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCccce
Confidence 3678888889999999999999998643322 223544222111 11000 0011112334433333332 46
Q ss_pred EE--EEEcCCccee-eeeeeeecCCCCeeeeCCCeeEEecCCeEEEEEEE-eeeCCCeEEEEECCeecCCCCceEEeecC
Q psy11143 207 RC--TASNLLGEDV-AEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDG 282 (940)
Q Consensus 207 tC--~a~N~~g~~s-~s~~L~V~~~~p~~~~~p~~~~v~~G~~v~L~C~v-~G~P~p~ItW~k~g~~l~~~~~~~~~~~g 282 (940)
.| .+....|... ..+.+.+......+...+....|..+..+.+.|.. .+.|...+.|++++..+....+.....+.
T Consensus 104 ~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d~ 183 (909)
T KOG1480|consen 104 WCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASDH 183 (909)
T ss_pred eeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhhhcC
Confidence 55 5555555321 12222222233345555666788889999999975 67888899999999988876666555555
Q ss_pred eEEEEeeeccCCCeEEEEEEEeCCCCcee-EEEEEE
Q psy11143 283 FVLVLNGVRESDAGVYNCVAQNSEGSAES-VAMIRI 317 (940)
Q Consensus 283 ~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~-s~~l~V 317 (940)
. +++..+...|.|+|+|+|.|..+.... .+.+.|
T Consensus 184 ~-li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~v 218 (909)
T KOG1480|consen 184 N-LIISQARLSDSGNYTCEATNIVAKRKSDPATVQV 218 (909)
T ss_pred C-ccccchhhhhcccceeeeehhhccccccceEEEE
Confidence 5 999999999999999999999877654 333333
No 306
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.39 E-value=0.0014 Score=62.04 Aligned_cols=74 Identities=23% Similarity=0.427 Sum_probs=50.2
Q ss_pred CCCeeEEecCCeEEEEEEEeeeC----CCeEEEEECCe------ec---------C-CC----CceEEee----cCeEEE
Q psy11143 235 RPVSTTYSTGSTSRITCLVEGHP----LPQMTWFHDGN------SL---------D-SD----DHVTYEH----DGFVLV 286 (940)
Q Consensus 235 ~p~~~~v~~G~~v~L~C~v~G~P----~p~ItW~k~g~------~l---------~-~~----~~~~~~~----~g~sL~ 286 (940)
.|....+.+|++++|.|...... ...+.|++... .+ . .. .++.+.. +..+|+
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 83 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV 83 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence 35667888999999999886532 24699986321 11 0 01 1222221 124699
Q ss_pred EeeeccCCCeEEEEEEEeCCCC
Q psy11143 287 LNGVRESDAGVYNCVAQNSEGS 308 (940)
Q Consensus 287 I~~v~~~DsG~YtC~A~N~~Gs 308 (940)
|.+++.+|+|.|.|.+.|....
T Consensus 84 I~~v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 84 IHNLQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred EeeCCcccCEEEEEEEEeCCCC
Confidence 9999999999999999987654
No 307
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.39 E-value=0.0018 Score=61.15 Aligned_cols=38 Identities=26% Similarity=0.493 Sum_probs=33.0
Q ss_pred ceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEEec
Q psy11143 98 GFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 135 (940)
Q Consensus 98 gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V~~ 135 (940)
...|.|.+++.+|+|.|.|.+.+.....+....|.|.+
T Consensus 78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred ceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 35689999999999999999999888888888888764
No 308
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.38 E-value=0.00069 Score=64.05 Aligned_cols=73 Identities=14% Similarity=0.300 Sum_probs=51.2
Q ss_pred EeCCCcEEEecCCeEEEEEEeecc-CCCeEEEEECC--Ee---e---------cCCCCeEEE----eeceEEEEcccccC
Q psy11143 49 IQRPVSTTYSTGSTSRITCLVEGH-PLPQMTWFHDG--NS---L---------DSDDHVTYE----HDGFVLVLNGVRES 109 (940)
Q Consensus 49 ~~~p~~~~V~eGesv~L~C~v~g~-P~p~V~W~kdg--~~---I---------~~~~~~~~~----~~gs~L~I~~v~~~ 109 (940)
...|..+.+.+|++|+|.|..... ....+.|||.. .. + ....++.+. .....|.|.+++.+
T Consensus 3 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~ 82 (116)
T cd07706 3 TQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLE 82 (116)
T ss_pred EEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHH
Confidence 455677889999999999998753 45679999832 11 1 011233332 12345899999999
Q ss_pred CCeEEEEEEEeC
Q psy11143 110 DAGVYNCVAQNS 121 (940)
Q Consensus 110 DsG~YtC~a~n~ 121 (940)
|+|.|.|.+...
T Consensus 83 Dsg~Y~C~~~~~ 94 (116)
T cd07706 83 DSAKYFCALSTL 94 (116)
T ss_pred HCEEEEEEEECC
Confidence 999999999853
No 309
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=97.38 E-value=0.0014 Score=60.18 Aligned_cols=72 Identities=24% Similarity=0.404 Sum_probs=47.4
Q ss_pred eEEEEEEeecc-CC---CeEEEEECCE----ee-----------cC--CCCeEEE---eeceEEEEcccccCCCeEEEEE
Q psy11143 62 TSRITCLVEGH-PL---PQMTWFHDGN----SL-----------DS--DDHVTYE---HDGFVLVLNGVRESDAGVYNCV 117 (940)
Q Consensus 62 sv~L~C~v~g~-P~---p~V~W~kdg~----~I-----------~~--~~~~~~~---~~gs~L~I~~v~~~DsG~YtC~ 117 (940)
.|+|.|..... |. .+|+|.+... .+ .. ..++.+. .....|.|.+++.+|+|.|+|.
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~ 81 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE 81 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence 68999998742 21 1699987421 11 00 1222322 1124579999999999999999
Q ss_pred EEe-CCCceEEEEEEEE
Q psy11143 118 AQN-SEGSAESVAMIRI 133 (940)
Q Consensus 118 a~n-~~g~~~~~~~L~V 133 (940)
+.+ +.|..+..+.|+|
T Consensus 82 v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 82 FATFPTGNRESQLNLTV 98 (99)
T ss_pred EEeCCCCCeEEEEEEEE
Confidence 999 6776666777766
No 310
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.36 E-value=0.00092 Score=62.63 Aligned_cols=76 Identities=32% Similarity=0.417 Sum_probs=54.5
Q ss_pred CCCeEEEEEeecCcC-------CCeEEEEeCC-----eee----c----------cCCcEEEee------eceEEEecCC
Q psy11143 336 AGSSVEIPCKPDGEP-------LPRISWSKDE-----AEF----V----------EDRNHKIHR------TGSLRLYNIG 383 (940)
Q Consensus 336 ~G~~vtL~C~v~g~P-------~p~i~W~k~g-----~~i----~----------~~~~~~i~~------~~sL~I~~v~ 383 (940)
.|++|+|.|...-.| .+.|.|.|.. ..+ . -.+|..+.. +.+|.|.+++
T Consensus 1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~ 80 (110)
T cd05902 1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR 80 (110)
T ss_pred CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence 378899999955332 3589998741 111 0 113444432 4489999999
Q ss_pred CCCCeEEEEEEEeCCeeEEEEEEEEEec
Q psy11143 384 PQDSGLYRCTASNLLGEDVAEGYLTVTG 411 (940)
Q Consensus 384 ~~D~G~YtC~A~N~~G~~~~s~~L~V~~ 411 (940)
.+|+|.|.|.+.......+..+.|+|.+
T Consensus 81 ~~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 81 YSDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred HHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 9999999999999777788888888875
No 311
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.35 E-value=0.0015 Score=61.52 Aligned_cols=75 Identities=25% Similarity=0.462 Sum_probs=54.8
Q ss_pred CCeEEEEEeecCcC-----------CCeEEEEeC-----C-----eee--c----------cCCcEEEe------eeceE
Q psy11143 337 GSSVEIPCKPDGEP-----------LPRISWSKD-----E-----AEF--V----------EDRNHKIH------RTGSL 377 (940)
Q Consensus 337 G~~vtL~C~v~g~P-----------~p~i~W~k~-----g-----~~i--~----------~~~~~~i~------~~~sL 377 (940)
|++++|.|...-.| .+.|.|++- | ..+ . ..+|..+. .+.+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 67899999987444 138999873 1 111 0 11233332 24589
Q ss_pred EEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEec
Q psy11143 378 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411 (940)
Q Consensus 378 ~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~ 411 (940)
.|.+++.+|+|.|.|.+.+........+.|.|.+
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred EEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 9999999999999999999999999999998875
No 312
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.30 E-value=0.0014 Score=57.87 Aligned_cols=77 Identities=17% Similarity=0.276 Sum_probs=54.5
Q ss_pred ceeecCCCcEEEEEEeCCCC--CCeEEEeeCCeeccccCceEEeeeceEEEeecccCCCceEEEEEEcCCcceeeeeeee
Q psy11143 147 DMRAPAGSSVEIPCKPDGEP--LPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT 224 (940)
Q Consensus 147 ~~~v~~Ge~vtL~C~v~g~P--~p~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~ 224 (940)
+..+..|++++|+|.....+ .+.|+|...+...... ......+|.+..++..|+|.++|.++...-.....+.+.
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~---~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~ 84 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQI---LNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIK 84 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCcccee---ccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeEE
Confidence 44678999999999996544 4599998866543211 112345799999999999999999986544444555554
Q ss_pred ec
Q psy11143 225 VT 226 (940)
Q Consensus 225 V~ 226 (940)
|.
T Consensus 85 Vl 86 (88)
T cd07694 85 VL 86 (88)
T ss_pred EE
Confidence 43
No 313
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.30 E-value=0.002 Score=57.12 Aligned_cols=63 Identities=17% Similarity=0.399 Sum_probs=44.0
Q ss_pred EEEEEEEee-eCCCeEEEEECCeecCCCCc-eEEeecC------eEEEEeeeccCCCeEEEEEEEeCCCCc
Q psy11143 247 SRITCLVEG-HPLPQMTWFHDGNSLDSDDH-VTYEHDG------FVLVLNGVRESDAGVYNCVAQNSEGSA 309 (940)
Q Consensus 247 v~L~C~v~G-~P~p~ItW~k~g~~l~~~~~-~~~~~~g------~sL~I~~v~~~DsG~YtC~A~N~~Gs~ 309 (940)
++|+|.+.| +|.+.|+|+++|..+..... .....++ +.|.+.....++...|+|+|.|.....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~ 72 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD 72 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence 689999987 58899999999998865432 1122222 124454555667789999999987544
No 314
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.24 E-value=0.0013 Score=58.41 Aligned_cols=62 Identities=18% Similarity=0.356 Sum_probs=42.7
Q ss_pred EEEEEEeec-cCCCeEEEEECCEeecCCCCeEEE--eec-----eEEEEcccccCCCeEEEEEEEeCCCc
Q psy11143 63 SRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYE--HDG-----FVLVLNGVRESDAGVYNCVAQNSEGS 124 (940)
Q Consensus 63 v~L~C~v~g-~P~p~V~W~kdg~~I~~~~~~~~~--~~g-----s~L~I~~v~~~DsG~YtC~a~n~~g~ 124 (940)
++|.|.+.| +|.+.|+|+|+|+.+......... .++ +.|.+......|...|+|.|.+....
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 689999987 788899999999997643221111 112 23566555566778999999987544
No 315
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.24 E-value=0.002 Score=58.79 Aligned_cols=73 Identities=22% Similarity=0.381 Sum_probs=48.6
Q ss_pred CeEEEEEEeecc-CCCeEEEEECC----Eeec-------------CCCCeEEE---eeceEEEEcccccCCCeEEEEEEE
Q psy11143 61 STSRITCLVEGH-PLPQMTWFHDG----NSLD-------------SDDHVTYE---HDGFVLVLNGVRESDAGVYNCVAQ 119 (940)
Q Consensus 61 esv~L~C~v~g~-P~p~V~W~kdg----~~I~-------------~~~~~~~~---~~gs~L~I~~v~~~DsG~YtC~a~ 119 (940)
+.|+|.|..... ...+|+|.|.. ..+. -..+..+. .....|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 368999998642 33489998742 1211 01123332 223457999999999999999975
Q ss_pred -eCCCceEEEEEEEE
Q psy11143 120 -NSEGSAESVAMIRI 133 (940)
Q Consensus 120 -n~~g~~~~~~~L~V 133 (940)
.+.|..+.+..|+|
T Consensus 81 tfP~G~~~~~~~l~~ 95 (96)
T cd05887 81 TFPLGNTQSSTTVTV 95 (96)
T ss_pred eCCCCCeeEEEEEEE
Confidence 56777777777776
No 316
>KOG1480|consensus
Probab=97.22 E-value=0.00015 Score=85.31 Aligned_cols=172 Identities=22% Similarity=0.419 Sum_probs=109.1
Q ss_pred CCeEEeCCCcEEEecCCeEEEEEEeeccCCC----eEEEEECCEeecCC--CCeE-EEeeceEEEEcccccCCCe---EE
Q psy11143 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLP----QMTWFHDGNSLDSD--DHVT-YEHDGFVLVLNGVRESDAG---VY 114 (940)
Q Consensus 45 pP~~~~~p~~~~V~eGesv~L~C~v~g~P~p----~V~W~kdg~~I~~~--~~~~-~~~~gs~L~I~~v~~~DsG---~Y 114 (940)
-|.|+.+|.+..+..|.++.|.|.+...+.. .=.|..+...+... +... .......+.|.....++.| .|
T Consensus 24 l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~d~ 103 (909)
T KOG1480|consen 24 LPHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPEDY 103 (909)
T ss_pred cceeeecCCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCccce
Confidence 4678899999999999999999998543322 22355433322110 0000 0000011234433333332 35
Q ss_pred --EEEEEeCCCceEE-EEEEEEecccCCeeEecCCceeecCCCcEEEEEEeC-CCCCCeEEEeeCCeeccccCceEEeee
Q psy11143 115 --NCVAQNSEGSAES-VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPD-GEPLPRISWSKDEAEFVEDRNHKIHRT 190 (940)
Q Consensus 115 --tC~a~n~~g~~~~-~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~-g~P~p~ItW~k~g~~i~~~~~~~~~~~ 190 (940)
+|.+....|...+ .+.+++.. ..-.+...+.-..|..+..+.+.|... +.|...+.|++++..+...........
T Consensus 104 ~cQc~a~~~~g~~~s~~a~vr~ay-~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d 182 (909)
T KOG1480|consen 104 WCQCVAWSDDGTVKSRKATVRIAY-LRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASD 182 (909)
T ss_pred eeeeeeecCCCcchhhhHHHHHHH-HHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhhhc
Confidence 6677777774333 22222211 112344556667788899999999864 688889999999988877666666667
Q ss_pred ceEEEeecccCCCceEEEEEEcCCcce
Q psy11143 191 GSLRLYNIGPQDSGLYRCTASNLLGED 217 (940)
Q Consensus 191 ~sL~I~~v~~~DsG~YtC~a~N~~g~~ 217 (940)
..+.+..+...|.|+|+|+|.|..+..
T Consensus 183 ~~li~~~arlsd~~nytc~a~ni~~~r 209 (909)
T KOG1480|consen 183 HNLIISQARLSDSGNYTCEATNIVAKR 209 (909)
T ss_pred CCccccchhhhhcccceeeeehhhccc
Confidence 789999999999999999999987753
No 317
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.22 E-value=0.0014 Score=59.89 Aligned_cols=68 Identities=24% Similarity=0.398 Sum_probs=47.5
Q ss_pred EEEecCCeEEEEEEeec-cCCCeEEEEECCEe-----e--------cCCCCeEEEe----eceEEEEcccccCCCeEEEE
Q psy11143 55 TTYSTGSTSRITCLVEG-HPLPQMTWFHDGNS-----L--------DSDDHVTYEH----DGFVLVLNGVRESDAGVYNC 116 (940)
Q Consensus 55 ~~V~eGesv~L~C~v~g-~P~p~V~W~kdg~~-----I--------~~~~~~~~~~----~gs~L~I~~v~~~DsG~YtC 116 (940)
+.+.+|++|+|.|.... .+...+.|+|.... + ....+..+.. ....|.|.+++.+|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 46789999999999865 34567899986421 1 0112333321 22458999999999999999
Q ss_pred EEEeCC
Q psy11143 117 VAQNSE 122 (940)
Q Consensus 117 ~a~n~~ 122 (940)
.+....
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 997654
No 318
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.22 E-value=0.0011 Score=60.68 Aligned_cols=65 Identities=15% Similarity=0.331 Sum_probs=46.7
Q ss_pred eecCCCeEEEEEeecCc--CCCeEEEEeCCe---e--ec---------cCCcEEEeee---ceEEEecCCCCCCeEEEEE
Q psy11143 333 RAPAGSSVEIPCKPDGE--PLPRISWSKDEA---E--FV---------EDRNHKIHRT---GSLRLYNIGPQDSGLYRCT 393 (940)
Q Consensus 333 ~v~~G~~vtL~C~v~g~--P~p~i~W~k~g~---~--i~---------~~~~~~i~~~---~sL~I~~v~~~D~G~YtC~ 393 (940)
.+.+|++|+|.|.+.+. ....+.|++... + +. ...++..... .+|.|.+++.+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 46789999999998765 456899987421 1 11 0234544332 3699999999999999999
Q ss_pred EEeC
Q psy11143 394 ASNL 397 (940)
Q Consensus 394 A~N~ 397 (940)
+.+.
T Consensus 82 ~~~~ 85 (98)
T cd04984 82 VWDS 85 (98)
T ss_pred EccC
Confidence 8763
No 319
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.21 E-value=0.002 Score=64.79 Aligned_cols=82 Identities=20% Similarity=0.367 Sum_probs=60.2
Q ss_pred eeecCCCeEEEEEeec-CcCCCeEEEEeCCeee----------ccC--CcEEEe----eeceEEEecCCCCCCeEEEEEE
Q psy11143 332 MRAPAGSSVEIPCKPD-GEPLPRISWSKDEAEF----------VED--RNHKIH----RTGSLRLYNIGPQDSGLYRCTA 394 (940)
Q Consensus 332 ~~v~~G~~vtL~C~v~-g~P~p~i~W~k~g~~i----------~~~--~~~~i~----~~~sL~I~~v~~~D~G~YtC~A 394 (940)
+.+.+|++|+|.|... +...+.+.|+|....+ .++ .|..+. .+.+|+|.+++.+|+|.|+|..
T Consensus 25 v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F 104 (189)
T PHA02987 25 ITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIF 104 (189)
T ss_pred EEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEE
Confidence 5788999999999984 5567799999864322 111 233321 2458999999999999999987
Q ss_pred Ee-CCe-eEEEEEEEEEecCC
Q psy11143 395 SN-LLG-EDVAEGYLTVTGEN 413 (940)
Q Consensus 395 ~N-~~G-~~~~s~~L~V~~~~ 413 (940)
.- +.| ..+..+.|.|..+.
T Consensus 105 ~tfp~G~~~~gt~CLtVt~~~ 125 (189)
T PHA02987 105 NTLLSKNNEKGVVCLNVTTDS 125 (189)
T ss_pred EecCCCCCceeEEEEEEEchh
Confidence 54 456 77778889998764
No 320
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.19 E-value=0.0016 Score=57.88 Aligned_cols=63 Identities=19% Similarity=0.363 Sum_probs=43.3
Q ss_pred EEEEEEEee-eCCCeEEEEECCeecCCCCceEEe--ecC-----eEEEEeeeccCCCeEEEEEEEeCCCCc
Q psy11143 247 SRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYE--HDG-----FVLVLNGVRESDAGVYNCVAQNSEGSA 309 (940)
Q Consensus 247 v~L~C~v~G-~P~p~ItW~k~g~~l~~~~~~~~~--~~g-----~sL~I~~v~~~DsG~YtC~A~N~~Gs~ 309 (940)
++|.|.+.| +|...|+|+|+|..+......... .++ ++|.+..-..++...|+|+|.|.....
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~~ 72 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLNA 72 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcCC
Confidence 689999987 677899999999998643322211 112 125555445666779999999886543
No 321
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.19 E-value=0.0027 Score=60.35 Aligned_cols=71 Identities=14% Similarity=0.216 Sum_probs=48.0
Q ss_pred CCCcEEEecCCeEEEEEEeeccC------CCeEEEEECCEe------ec--C---------CCCeEEE----eeceEEEE
Q psy11143 51 RPVSTTYSTGSTSRITCLVEGHP------LPQMTWFHDGNS------LD--S---------DDHVTYE----HDGFVLVL 103 (940)
Q Consensus 51 ~p~~~~V~eGesv~L~C~v~g~P------~p~V~W~kdg~~------I~--~---------~~~~~~~----~~gs~L~I 103 (940)
.|..+.+.+|+.|+|.|...... ...+.|||.... +. . ..++.+. .....|.|
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I 84 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI 84 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence 46677899999999999875321 246899985321 10 0 0122221 12245899
Q ss_pred cccccCCCeEEEEEEEeC
Q psy11143 104 NGVRESDAGVYNCVAQNS 121 (940)
Q Consensus 104 ~~v~~~DsG~YtC~a~n~ 121 (940)
.+++.+|+|.|.|.+...
T Consensus 85 ~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 85 SDAQPEDSGKYFFRVELG 102 (119)
T ss_pred ccCChhhCeEEEEEEEcC
Confidence 999999999999998764
No 322
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=97.18 E-value=0.0022 Score=58.64 Aligned_cols=73 Identities=25% Similarity=0.448 Sum_probs=50.4
Q ss_pred CCeEEEEEeecCcCCC-eEEEEeCCe----eec---c----------CCcEEEe----eeceEEEecCCCCCCeEEEEEE
Q psy11143 337 GSSVEIPCKPDGEPLP-RISWSKDEA----EFV---E----------DRNHKIH----RTGSLRLYNIGPQDSGLYRCTA 394 (940)
Q Consensus 337 G~~vtL~C~v~g~P~p-~i~W~k~g~----~i~---~----------~~~~~i~----~~~sL~I~~v~~~D~G~YtC~A 394 (940)
|++|+|.|........ .|.|+|... .+. . ..+..+. .+.+|.|.+++.+|+|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 7899999986644332 799998432 110 0 1122221 2447999999999999999997
Q ss_pred E-eCCeeEEEEEEEEE
Q psy11143 395 S-NLLGEDVAEGYLTV 409 (940)
Q Consensus 395 ~-N~~G~~~~s~~L~V 409 (940)
. .+.|.....+.|+|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 6 47788777888877
No 323
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.17 E-value=0.0014 Score=61.02 Aligned_cols=65 Identities=18% Similarity=0.444 Sum_probs=44.4
Q ss_pred EEecCCeEEEEEEeecc-CCCeEEEEECCEe---------e--cC-----------CCCeEEE--e--eceEEEEccccc
Q psy11143 56 TYSTGSTSRITCLVEGH-PLPQMTWFHDGNS---------L--DS-----------DDHVTYE--H--DGFVLVLNGVRE 108 (940)
Q Consensus 56 ~V~eGesv~L~C~v~g~-P~p~V~W~kdg~~---------I--~~-----------~~~~~~~--~--~gs~L~I~~v~~ 108 (940)
.|.+|++|+|.|.+.+. ....+.|||.... + .. ..++++. . ....|+|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 57899999999998653 3457999984221 0 00 1123222 1 124589999999
Q ss_pred CCCeEEEEEEEe
Q psy11143 109 SDAGVYNCVAQN 120 (940)
Q Consensus 109 ~DsG~YtC~a~n 120 (940)
+|+|.|.|...+
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999999863
No 324
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.14 E-value=0.0019 Score=52.81 Aligned_cols=60 Identities=35% Similarity=0.661 Sum_probs=45.2
Q ss_pred EEEEEEeeccCCCeEEEEECCEeecCCCCe------EEEeeceEEEEcccccCCCeEEEEEEEeCC
Q psy11143 63 SRITCLVEGHPLPQMTWFHDGNSLDSDDHV------TYEHDGFVLVLNGVRESDAGVYNCVAQNSE 122 (940)
Q Consensus 63 v~L~C~v~g~P~p~V~W~kdg~~I~~~~~~------~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~ 122 (940)
+.|.|.+.+.+...+.|++++......... ........|.|.++..+|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 478999988778899999998776543211 111333457999999999999999998765
No 325
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.13 E-value=0.0019 Score=52.74 Aligned_cols=59 Identities=31% Similarity=0.572 Sum_probs=45.7
Q ss_pred EEEEEeecCcCCCeEEEEeCCeeeccCC-------cEEEeeeceEEEecCCCCCCeEEEEEEEeCC
Q psy11143 340 VEIPCKPDGEPLPRISWSKDEAEFVEDR-------NHKIHRTGSLRLYNIGPQDSGLYRCTASNLL 398 (940)
Q Consensus 340 vtL~C~v~g~P~p~i~W~k~g~~i~~~~-------~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~ 398 (940)
+.|.|.+.+.+.+.+.|++++....... .........|.|.++...|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 4789999987778999999887654322 1222345579999999999999999999876
No 326
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.11 E-value=0.0025 Score=60.19 Aligned_cols=70 Identities=21% Similarity=0.313 Sum_probs=50.8
Q ss_pred EcCCceeecCCCeEEEEEeecCc-CCCeEEEEeCC--ee---e---------ccCCcEEEee-----eceEEEecCCCCC
Q psy11143 327 VKPFDMRAPAGSSVEIPCKPDGE-PLPRISWSKDE--AE---F---------VEDRNHKIHR-----TGSLRLYNIGPQD 386 (940)
Q Consensus 327 ~~p~~~~v~~G~~vtL~C~v~g~-P~p~i~W~k~g--~~---i---------~~~~~~~i~~-----~~sL~I~~v~~~D 386 (940)
..|..+.+.+|++|+|.|..... ....+.|+|.. .. + ....++.+.. ..+|.|.++..+|
T Consensus 4 q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~D 83 (116)
T cd07706 4 QAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLED 83 (116)
T ss_pred EeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHH
Confidence 34556788999999999998754 44589999732 11 1 1124565542 2379999999999
Q ss_pred CeEEEEEEEe
Q psy11143 387 SGLYRCTASN 396 (940)
Q Consensus 387 ~G~YtC~A~N 396 (940)
+|.|.|.+..
T Consensus 84 sg~Y~C~~~~ 93 (116)
T cd07706 84 SAKYFCALST 93 (116)
T ss_pred CEEEEEEEEC
Confidence 9999999985
No 327
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.05 E-value=0.0042 Score=56.30 Aligned_cols=65 Identities=25% Similarity=0.436 Sum_probs=41.1
Q ss_pred CCeEEEEEEeecc-CCC-eEEEEECCEeecCCC---CeEEEeeceE--EEEcccccCCCeEEEEEEEeCCCc
Q psy11143 60 GSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDD---HVTYEHDGFV--LVLNGVRESDAGVYNCVAQNSEGS 124 (940)
Q Consensus 60 Gesv~L~C~v~g~-P~p-~V~W~kdg~~I~~~~---~~~~~~~gs~--L~I~~v~~~DsG~YtC~a~n~~g~ 124 (940)
|+.++|.|.+.|. |.. .|+|+++|+.+.... ......++.. .....+...+.+.|+|.+.+....
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~~ 85 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGLK 85 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCCC
Confidence 7889999999994 554 899999996432211 1121223322 112234455889999999887543
No 328
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.01 E-value=0.0059 Score=57.36 Aligned_cols=71 Identities=24% Similarity=0.397 Sum_probs=45.4
Q ss_pred cEEEecCCeEEEEEEeec-cCC-CeEEEEECCEeecCCCCeEE-Eeec------eEEEEcccccCCCe-EEEEEEEeCCC
Q psy11143 54 STTYSTGSTSRITCLVEG-HPL-PQMTWFHDGNSLDSDDHVTY-EHDG------FVLVLNGVRESDAG-VYNCVAQNSEG 123 (940)
Q Consensus 54 ~~~V~eGesv~L~C~v~g-~P~-p~V~W~kdg~~I~~~~~~~~-~~~g------s~L~I~~v~~~DsG-~YtC~a~n~~g 123 (940)
......|+.++|.|.+.| +|. .+|+|+|||+.+........ ..++ +.|.+.. ...|.| .|+|.+.+...
T Consensus 15 ~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~l 93 (111)
T cd05772 15 SGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRTL 93 (111)
T ss_pred hhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCCC
Confidence 444567889999999988 564 59999999999864221111 1222 1234443 344444 59999998764
Q ss_pred ce
Q psy11143 124 SA 125 (940)
Q Consensus 124 ~~ 125 (940)
..
T Consensus 94 ~~ 95 (111)
T cd05772 94 QA 95 (111)
T ss_pred CC
Confidence 43
No 329
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=96.98 E-value=0.6 Score=51.97 Aligned_cols=254 Identities=14% Similarity=0.227 Sum_probs=133.3
Q ss_pred CcccEEEECCCCCCCCeEEEEEEE-cCCceEEEEEEEEEeCCCeEEeCCCcEEEecCC-eEEEEEEeec---cCCCeEEE
Q psy11143 5 RSSTELVISGVQREHGGRYSCVAG-NPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGS-TSRITCLVEG---HPLPQMTW 79 (940)
Q Consensus 5 ~s~~tL~I~~v~~sDsG~Y~C~a~-n~~g~~~~~v~l~V~~pP~~~~~p~~~~V~eGe-sv~L~C~v~g---~P~p~V~W 79 (940)
.-..++.+.|+..+|.|.|+|... +..-..+.++.+.|. |.+... ....|+ .+.+-|..+. ...+++.-
T Consensus 78 dkeYsf~~~Nvs~sdEGrYrCIFYLn~~EtyrH~I~vrVm--PKId~t----~~~~~dk~~~y~CNrtrtm~dd~vKv~~ 151 (500)
T PHA02914 78 DKEYSFIEENIGEHEDGDFKCIFYLGDNESHKHEILVRKA--PKIDTT----FLEFNDKHTCICCKIDKPMNQDALKVFF 151 (500)
T ss_pred cceeEEEecCcccccCCcEEEEEEeCCceeEEEEEEEEEc--cceeee----eeecCCCcEEEEEecCcccccCceeEEE
Confidence 456789999999999999999987 444456666666654 443311 112333 4445577643 12335555
Q ss_pred EECCEeecCCCC--eEEEeeceE--E-EEcccccCC-CeEEEEEEEeCCCceEEEE------EEEEe-------------
Q psy11143 80 FHDGNSLDSDDH--VTYEHDGFV--L-VLNGVRESD-AGVYNCVAQNSEGSAESVA------MIRIN------------- 134 (940)
Q Consensus 80 ~kdg~~I~~~~~--~~~~~~gs~--L-~I~~v~~~D-sG~YtC~a~n~~g~~~~~~------~L~V~------------- 134 (940)
.-.|..+..... -.+..+.+. + ...+-...| +-.-+|.++...-..+..+ .+.+.
T Consensus 152 iaGGV~v~~~~~g~~~fnsd~s~~~v~~~Adksy~D~Trev~C~VSY~G~~~e~~iSy~~~~~vn~s~i~~~~~p~n~~~ 231 (500)
T PHA02914 152 VAGGVNVDGNFLGKKDFNNDPSNRTVKLCADKSHDDTAREALCGVEYFGALKELNISYDGTNAVNISEILSKVCPENVIN 231 (500)
T ss_pred EeccEEEcCeeeccccccCCCceeEEEEecCCCCccchhheEEEEEEccceeEEEeeecCccceeHHHhhhhcCCccccc
Confidence 555555543111 111111111 1 111111122 3345666654322211100 01100
Q ss_pred ----c--------------ccCC--------eeE--e-cCCceeecCCCcEEEEEEeC--CC-CCCeEEEeeCCeeccc-
Q psy11143 135 ----G--------------HRAP--------RLV--V-KPFDMRAPAGSSVEIPCKPD--GE-PLPRISWSKDEAEFVE- 181 (940)
Q Consensus 135 ----~--------------~~~P--------~~~--~-~p~~~~v~~Ge~vtL~C~v~--g~-P~p~ItW~k~g~~i~~- 181 (940)
+ ...+ .++ . +...+.+..|.+|.|.|..+ |+ ....++|+.-|-++.+
T Consensus 232 ~~~~~~~~~~~s~~~~~~ee~~~y~~~~~~~~v~y~kk~~~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~ 311 (500)
T PHA02914 232 SKVCGDNGSKDSELLEDEEEEDDYEESGDYSEVTYDKKKFDEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPL 311 (500)
T ss_pred ccccccCCcccchhhcchhhcCChhhcCCcceEEecccccceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccce
Confidence 0 0000 011 1 12345677799999999876 33 3447899765433321
Q ss_pred ----------------cCceEEe---------eeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeecCCCCeeeeCC
Q psy11143 182 ----------------DRNHKIH---------RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRP 236 (940)
Q Consensus 182 ----------------~~~~~~~---------~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~~~p~~~~~p 236 (940)
...+.+. ..++|+|.++..+..|-|.|+|....-......-|.|.. ...+.
T Consensus 312 ~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d-~V~f~--- 387 (500)
T PHA02914 312 IGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKAHINNAGCYEAQAFMGKFKEECRHCFKVAD-HVFFK--- 387 (500)
T ss_pred eEEEEecceeecccccCCceEEEEecccccchhhceEEeeeEEEEcCCceEEEEecCcchhhhhhheEecc-EEEEE---
Confidence 1122221 245799999999999999999987655555555555541 11111
Q ss_pred CeeEEecCC-eEEEEEEEeee--CCCeEEEEECCeecC
Q psy11143 237 VSTTYSTGS-TSRITCLVEGH--PLPQMTWFHDGNSLD 271 (940)
Q Consensus 237 ~~~~v~~G~-~v~L~C~v~G~--P~p~ItW~k~g~~l~ 271 (940)
-..+|. .....|-+-.+ .+++|.|..+|....
T Consensus 388 ---W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~ 422 (500)
T PHA02914 388 ---WNTEGDNETKVACYAAQYDMQPFSILWKSNGVSFG 422 (500)
T ss_pred ---EEeccCceEEEEEEEEecccCCceeEEEEccEEec
Confidence 011333 34678987654 345799999887553
No 330
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.95 E-value=0.0023 Score=58.93 Aligned_cols=73 Identities=22% Similarity=0.402 Sum_probs=47.3
Q ss_pred CCcEEEecCCeEEEEEEeec-cC-CCeEEEEECCEeecCCC---CeEEEeece-----EEEEcccccCCCeEEEEEEEeC
Q psy11143 52 PVSTTYSTGSTSRITCLVEG-HP-LPQMTWFHDGNSLDSDD---HVTYEHDGF-----VLVLNGVRESDAGVYNCVAQNS 121 (940)
Q Consensus 52 p~~~~V~eGesv~L~C~v~g-~P-~p~V~W~kdg~~I~~~~---~~~~~~~gs-----~L~I~~v~~~DsG~YtC~a~n~ 121 (940)
|.......++.++|.|.+.| +| ...|+|++||+.+.... ......+++ .|.+..-...+...|+|.+.+.
T Consensus 9 p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~ 88 (100)
T cd07699 9 PSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHE 88 (100)
T ss_pred CCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEec
Confidence 33444556788999999998 55 45899999999885321 111112332 2455544455578999999987
Q ss_pred CCc
Q psy11143 122 EGS 124 (940)
Q Consensus 122 ~g~ 124 (940)
...
T Consensus 89 ~l~ 91 (100)
T cd07699 89 GLS 91 (100)
T ss_pred CCC
Confidence 543
No 331
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=96.94 E-value=0.0031 Score=57.56 Aligned_cols=67 Identities=19% Similarity=0.284 Sum_probs=48.1
Q ss_pred eeecCCCeEEEEEeecC-cCCCeEEEEeCCe-----ee--------ccCCcEEEee-----eceEEEecCCCCCCeEEEE
Q psy11143 332 MRAPAGSSVEIPCKPDG-EPLPRISWSKDEA-----EF--------VEDRNHKIHR-----TGSLRLYNIGPQDSGLYRC 392 (940)
Q Consensus 332 ~~v~~G~~vtL~C~v~g-~P~p~i~W~k~g~-----~i--------~~~~~~~i~~-----~~sL~I~~v~~~D~G~YtC 392 (940)
+.+.+|++|+|.|.... .+...+.|+|... .+ ....++.+.. ..+|.|.+++.+|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 35778999999999875 3456899998542 11 1123455432 2379999999999999999
Q ss_pred EEEeCC
Q psy11143 393 TASNLL 398 (940)
Q Consensus 393 ~A~N~~ 398 (940)
.+.+..
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 998753
No 332
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=96.91 E-value=0.0044 Score=55.40 Aligned_cols=66 Identities=27% Similarity=0.516 Sum_probs=43.0
Q ss_pred CCeEEEEEEee-ccCCCeEEEEECCEeecCCCCeEE-E-ee-----ceEEEEcccccCCCeEEEEEEEeCCCce
Q psy11143 60 GSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTY-E-HD-----GFVLVLNGVRESDAGVYNCVAQNSEGSA 125 (940)
Q Consensus 60 Gesv~L~C~v~-g~P~p~V~W~kdg~~I~~~~~~~~-~-~~-----gs~L~I~~v~~~DsG~YtC~a~n~~g~~ 125 (940)
|+.+.|+|.+. ++|++.|+|+.++..+........ . .. .+.|.+..-...+...++|.|.+.....
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~~ 87 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALSQ 87 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccCC
Confidence 78999999875 589999999999987721111111 1 11 1335665545556778899999876543
No 333
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=96.86 E-value=0.0097 Score=55.90 Aligned_cols=72 Identities=25% Similarity=0.392 Sum_probs=45.5
Q ss_pred CeeEEecCCeEEEEEEEeee-CC-CeEEEEECCeecCCCCce-EEeecC-e-----EEEEeeeccCCCe-EEEEEEEeCC
Q psy11143 237 VSTTYSTGSTSRITCLVEGH-PL-PQMTWFHDGNSLDSDDHV-TYEHDG-F-----VLVLNGVRESDAG-VYNCVAQNSE 306 (940)
Q Consensus 237 ~~~~v~~G~~v~L~C~v~G~-P~-p~ItW~k~g~~l~~~~~~-~~~~~g-~-----sL~I~~v~~~DsG-~YtC~A~N~~ 306 (940)
.......|+.++|.|.+.|+ |. ..++|++||..+...... ....++ + .|.+.. ...|.| .|+|.+.+..
T Consensus 14 ~~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 14 PSGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT 92 (111)
T ss_pred chhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence 34445578889999999984 54 489999999998643221 112232 1 133343 334444 5999999976
Q ss_pred CCc
Q psy11143 307 GSA 309 (940)
Q Consensus 307 Gs~ 309 (940)
...
T Consensus 93 l~~ 95 (111)
T cd05772 93 LQA 95 (111)
T ss_pred CCC
Confidence 444
No 334
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=96.80 E-value=0.0029 Score=58.65 Aligned_cols=65 Identities=18% Similarity=0.441 Sum_probs=44.2
Q ss_pred EEecCCeEEEEEEeeccCCCeEEEEECCE----e---e---cCCC----------CeEEE----eeceEEEEcccccCCC
Q psy11143 56 TYSTGSTSRITCLVEGHPLPQMTWFHDGN----S---L---DSDD----------HVTYE----HDGFVLVLNGVRESDA 111 (940)
Q Consensus 56 ~V~eGesv~L~C~v~g~P~p~V~W~kdg~----~---I---~~~~----------~~~~~----~~gs~L~I~~v~~~Ds 111 (940)
.+.+|++|+|.|.+.......+.|||... . | .... ..++. .....|.|.+++.+|+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs 81 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE 81 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence 36799999999998655455799998431 1 1 1100 12222 2234589999999999
Q ss_pred eEEEEEEEe
Q psy11143 112 GVYNCVAQN 120 (940)
Q Consensus 112 G~YtC~a~n 120 (940)
|+|.|.+.+
T Consensus 82 gtY~Ca~~~ 90 (104)
T cd05720 82 GYYFCSVAS 90 (104)
T ss_pred EEEEEEEcc
Confidence 999999863
No 335
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=96.78 E-value=0.0066 Score=55.23 Aligned_cols=73 Identities=18% Similarity=0.288 Sum_probs=45.4
Q ss_pred CCcEEEecCCeEEEEEEeec-cCC-CeEEEEECCEeecCCC---CeEEEeec-----eEEEEcccccCCCeEEEEEEEeC
Q psy11143 52 PVSTTYSTGSTSRITCLVEG-HPL-PQMTWFHDGNSLDSDD---HVTYEHDG-----FVLVLNGVRESDAGVYNCVAQNS 121 (940)
Q Consensus 52 p~~~~V~eGesv~L~C~v~g-~P~-p~V~W~kdg~~I~~~~---~~~~~~~g-----s~L~I~~v~~~DsG~YtC~a~n~ 121 (940)
|.......++.++|.|.+.| +|. ..|+|+++|..+.... ......++ +.|.+..-...+...|+|.|.+.
T Consensus 6 ps~~~~~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~ 85 (94)
T cd05847 6 SSCCDTGTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQ 85 (94)
T ss_pred cChHHcCCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEEC
Confidence 33333335677999999998 554 5899999999863221 11111222 22445544445677999999987
Q ss_pred CCc
Q psy11143 122 EGS 124 (940)
Q Consensus 122 ~g~ 124 (940)
...
T Consensus 86 ~~~ 88 (94)
T cd05847 86 GTT 88 (94)
T ss_pred Cee
Confidence 544
No 336
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=96.75 E-value=0.012 Score=53.51 Aligned_cols=67 Identities=24% Similarity=0.376 Sum_probs=42.8
Q ss_pred ecCCeEEEEEEeec-cCCC-eEEEEECCEeecCCC---CeEEEeeceE--EEEcccccCCCeEEEEEEEeCCCc
Q psy11143 58 STGSTSRITCLVEG-HPLP-QMTWFHDGNSLDSDD---HVTYEHDGFV--LVLNGVRESDAGVYNCVAQNSEGS 124 (940)
Q Consensus 58 ~eGesv~L~C~v~g-~P~p-~V~W~kdg~~I~~~~---~~~~~~~gs~--L~I~~v~~~DsG~YtC~a~n~~g~ 124 (940)
..|+.++|.|.+.| +|.. .++|++||+.+.... ......+++. .....+...+...|+|.+.+....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l~ 85 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSLQ 85 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCCC
Confidence 46899999999998 5544 889999999876531 1111122221 111123345677999999987554
No 337
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.75 E-value=0.0056 Score=56.61 Aligned_cols=72 Identities=25% Similarity=0.433 Sum_probs=44.7
Q ss_pred CcEEEecCCeEEEEEEeec-cCCC-eEEEEECCEeecCCCCe----EEEe--ece-----EEEEcccccCCCeEEEEEEE
Q psy11143 53 VSTTYSTGSTSRITCLVEG-HPLP-QMTWFHDGNSLDSDDHV----TYEH--DGF-----VLVLNGVRESDAGVYNCVAQ 119 (940)
Q Consensus 53 ~~~~V~eGesv~L~C~v~g-~P~p-~V~W~kdg~~I~~~~~~----~~~~--~gs-----~L~I~~v~~~DsG~YtC~a~ 119 (940)
....+..|..++|.|.+.| +|.. .|+|+|||+++...... .... +++ .|.|..-...+...|+|.|.
T Consensus 9 ~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~ 88 (102)
T cd05768 9 PSEELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVG 88 (102)
T ss_pred ChHHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeE
Confidence 3334456789999999999 4543 78999999987532211 1111 132 24454333445678999998
Q ss_pred eCCCc
Q psy11143 120 NSEGS 124 (940)
Q Consensus 120 n~~g~ 124 (940)
+....
T Consensus 89 H~~l~ 93 (102)
T cd05768 89 HEALP 93 (102)
T ss_pred eCCCC
Confidence 86543
No 338
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=96.73 E-value=0.0072 Score=54.01 Aligned_cols=64 Identities=23% Similarity=0.434 Sum_probs=42.3
Q ss_pred CCeEEEEEeec-CcCCCeEEEEeCCeeeccCCcEE--------EeeeceEEEecCCCCCCeEEEEEEEeCCee
Q psy11143 337 GSSVEIPCKPD-GEPLPRISWSKDEAEFVEDRNHK--------IHRTGSLRLYNIGPQDSGLYRCTASNLLGE 400 (940)
Q Consensus 337 G~~vtL~C~v~-g~P~p~i~W~k~g~~i~~~~~~~--------i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~ 400 (940)
|+.+.|.|.+. ++|.|.|+|+.++..+....... ....++|.+..-...+...++|.|.|..-.
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 78999999654 78999999999987761110000 111235666655555667799999997543
No 339
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=96.72 E-value=0.012 Score=53.63 Aligned_cols=70 Identities=20% Similarity=0.287 Sum_probs=45.9
Q ss_pred CeEEEEEeecCc-CCCeEEEEeCCe----ee-----------cc--CCcEEEe----eeceEEEecCCCCCCeEEEEEEE
Q psy11143 338 SSVEIPCKPDGE-PLPRISWSKDEA----EF-----------VE--DRNHKIH----RTGSLRLYNIGPQDSGLYRCTAS 395 (940)
Q Consensus 338 ~~vtL~C~v~g~-P~p~i~W~k~g~----~i-----------~~--~~~~~i~----~~~sL~I~~v~~~D~G~YtC~A~ 395 (940)
++++|.|..... ...++.|.|... .+ .. .+|..+. .+.+|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 468899987532 234888988421 11 11 1233332 24689999999999999999997
Q ss_pred e-CCeeEEEEEEE
Q psy11143 396 N-LLGEDVAEGYL 407 (940)
Q Consensus 396 N-~~G~~~~s~~L 407 (940)
. +.|..++.+.|
T Consensus 81 t~P~g~~~~~i~~ 93 (96)
T cd05889 81 TYPQGSWEKVIEV 93 (96)
T ss_pred eCCCCCeEEEEEE
Confidence 6 46666655444
No 340
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=96.71 E-value=0.0061 Score=57.81 Aligned_cols=71 Identities=18% Similarity=0.375 Sum_probs=48.2
Q ss_pred eCCCcEEEecCCeEEEEEEeeccC--CCeEEEEECC--E-e--e---cC-----------CCCeEEEee----ceEEEEc
Q psy11143 50 QRPVSTTYSTGSTSRITCLVEGHP--LPQMTWFHDG--N-S--L---DS-----------DDHVTYEHD----GFVLVLN 104 (940)
Q Consensus 50 ~~p~~~~V~eGesv~L~C~v~g~P--~p~V~W~kdg--~-~--I---~~-----------~~~~~~~~~----gs~L~I~ 104 (940)
.+|....+.+|++|+|.|...+.. ...+.|||.. + + | .. ..++....+ ...|.|.
T Consensus 2 ~~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~ 81 (117)
T cd04981 2 VESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLN 81 (117)
T ss_pred ccCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEEC
Confidence 356778899999999999976432 4569999732 1 1 1 00 112222211 1358999
Q ss_pred ccccCCCeEEEEEEEe
Q psy11143 105 GVRESDAGVYNCVAQN 120 (940)
Q Consensus 105 ~v~~~DsG~YtC~a~n 120 (940)
+++.+|+|.|.|.+..
T Consensus 82 ~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 82 SLTPEDTAVYYCARGL 97 (117)
T ss_pred CCCHHHCEEEEEEEEc
Confidence 9999999999998865
No 341
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=96.70 E-value=0.013 Score=53.31 Aligned_cols=63 Identities=17% Similarity=0.423 Sum_probs=41.2
Q ss_pred ecCCeEEEEEEeec-cCC-CeEEEEECCEeecCCC---CeEEEeece-----EEEEcccccCCCeEEEEEEEeCCC
Q psy11143 58 STGSTSRITCLVEG-HPL-PQMTWFHDGNSLDSDD---HVTYEHDGF-----VLVLNGVRESDAGVYNCVAQNSEG 123 (940)
Q Consensus 58 ~eGesv~L~C~v~g-~P~-p~V~W~kdg~~I~~~~---~~~~~~~gs-----~L~I~~v~~~DsG~YtC~a~n~~g 123 (940)
..|+.++|.|.+.| +|. ..++|.+||..+.... ......+++ .|.+ ...+...|+|.+.+...
T Consensus 13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v---~~~~~~~ytC~V~H~~l 85 (94)
T cd05767 13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNF---TPEEGDIYSCIVEHWGL 85 (94)
T ss_pred cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEE---ECCCCCeEEEEEEeCCC
Confidence 34677899999999 554 4889999999875421 111122332 2333 34566799999988643
No 342
>PHA03271 envelope glycoprotein C; Provisional
Probab=96.69 E-value=0.1 Score=58.19 Aligned_cols=195 Identities=16% Similarity=0.225 Sum_probs=100.5
Q ss_pred EEEEcccccCCCeEEEEEEEeCCCceEE--EEEEEEecccCCeeEecCCceeecCCCcEEEEEEeCCC-CCC--eEEEee
Q psy11143 100 VLVLNGVRESDAGVYNCVAQNSEGSAES--VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLP--RISWSK 174 (940)
Q Consensus 100 ~L~I~~v~~~DsG~YtC~a~n~~g~~~~--~~~L~V~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~-P~p--~ItW~k 174 (940)
.|.|.++...|+|.|+-...+.....-. ...+.+. ..+|.+.+.+. .+.+|+...-.|.+..+ |+- .++|++
T Consensus 208 ~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~-~RPPsVsV~a~--PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~ 284 (490)
T PHA03271 208 GVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVC-QRPASVDVLAP--PVLSGENYKASCIVRHFYPPGSVYVSWRQ 284 (490)
T ss_pred eEEEEEeecccceEEEEEecCCCCCccccceEEEEEE-ecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 3799999999999775555544333322 2223332 23444555543 47799999999999874 433 699999
Q ss_pred CCeeccccCceEE-----------eeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeecCCCCeeeeCCCe-eEEe
Q psy11143 175 DEAEFVEDRNHKI-----------HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVS-TTYS 242 (940)
Q Consensus 175 ~g~~i~~~~~~~~-----------~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~~~p~~~~~p~~-~~v~ 242 (940)
+|........... ...++|.+.+...+..=..+|.+.=..+....+. .-. ..|.....|.- +...
T Consensus 285 nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~r--nAa-atP~VY~~P~ISv~Fe 361 (490)
T PHA03271 285 NGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTT--NAT-AIPTVYHHPRISLAFK 361 (490)
T ss_pred CCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeee--ecc-cCCccccCCeEEEEEe
Confidence 9887643221110 1112343433322223379999864333222211 111 22222222322 2344
Q ss_pred cCCeEEEEEEEeeeC-CCeEEEEECCeecCCCCc------eEEeecCeEEEEee-eccCC---CeEEEEEEEe
Q psy11143 243 TGSTSRITCLVEGHP-LPQMTWFHDGNSLDSDDH------VTYEHDGFVLVLNG-VRESD---AGVYNCVAQN 304 (940)
Q Consensus 243 ~G~~v~L~C~v~G~P-~p~ItW~k~g~~l~~~~~------~~~~~~g~sL~I~~-v~~~D---sG~YtC~A~N 304 (940)
.|.. .|.+.--| ...+.|+-++...+.... ......|. ..|.+ ...+| --.|+|.+..
T Consensus 362 dG~A---VCtA~CVP~gV~lrWlVgD~p~pn~t~d~~itGvC~erPGl-VNLrS~lPlSd~dgpveYTCrL~G 430 (490)
T PHA03271 362 DGYA---ICTIECVPSGITVRWLVHDEPQPNTTYDTVVTGLCRTIDRH-RNLISRIPVQDNWQKTKYTCRLIG 430 (490)
T ss_pred CCEE---EEeccccCCCcEEEEEecCCCCCCcccccccccccCCCCCc-eeeeccCCchhcCCceeEEEEEee
Confidence 4443 35554443 348999987765433211 11111222 44444 23333 2479999874
No 343
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=96.68 E-value=0.019 Score=51.95 Aligned_cols=65 Identities=25% Similarity=0.436 Sum_probs=41.7
Q ss_pred CCeEEEEEEEeee-CCC-eEEEEECCeecCCCC---ceEEeecCeE--EEEeeeccCCCeEEEEEEEeCCCC
Q psy11143 244 GSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDD---HVTYEHDGFV--LVLNGVRESDAGVYNCVAQNSEGS 308 (940)
Q Consensus 244 G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~~~~---~~~~~~~g~s--L~I~~v~~~DsG~YtC~A~N~~Gs 308 (940)
++.++|.|.+.|+ |.. .++|+++|..+.... ......++.- .....+...+...|+|.+.+....
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~~ 85 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGLK 85 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCCC
Confidence 6789999999995 554 899999996433221 1222223321 122344456888999999887543
No 344
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=96.67 E-value=0.011 Score=51.23 Aligned_cols=62 Identities=23% Similarity=0.454 Sum_probs=40.6
Q ss_pred eEEEEEEeecc-CC-CeEEEEECCEeecCCCC---eEEEeec-----eEEEEcccccCCCeEEEEEEEeCCC
Q psy11143 62 TSRITCLVEGH-PL-PQMTWFHDGNSLDSDDH---VTYEHDG-----FVLVLNGVRESDAGVYNCVAQNSEG 123 (940)
Q Consensus 62 sv~L~C~v~g~-P~-p~V~W~kdg~~I~~~~~---~~~~~~g-----s~L~I~~v~~~DsG~YtC~a~n~~g 123 (940)
.++|.|.+.|. |. ..|+|+|||+++..... .....++ +.|.|......+...|+|.|.+...
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~~ 72 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEGL 72 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcCC
Confidence 37899999984 55 59999999987432211 1111222 2355655566778899999987643
No 345
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=96.64 E-value=0.013 Score=53.58 Aligned_cols=69 Identities=23% Similarity=0.467 Sum_probs=43.6
Q ss_pred CeEEEEEEeec-cCCCeEEEEECCE----eec-----------C--CCCeEEE---eeceEEEEcccccCCCeEEEEEEE
Q psy11143 61 STSRITCLVEG-HPLPQMTWFHDGN----SLD-----------S--DDHVTYE---HDGFVLVLNGVRESDAGVYNCVAQ 119 (940)
Q Consensus 61 esv~L~C~v~g-~P~p~V~W~kdg~----~I~-----------~--~~~~~~~---~~gs~L~I~~v~~~DsG~YtC~a~ 119 (940)
+.++|.|.... ....+|+|.|... .+. . ..++.+. .....|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 46899999753 2345889987432 111 0 1223322 123567999999999999999996
Q ss_pred eC-CCceEEEE
Q psy11143 120 NS-EGSAESVA 129 (940)
Q Consensus 120 n~-~g~~~~~~ 129 (940)
.. .|..+...
T Consensus 81 t~P~g~~~~~i 91 (96)
T cd05889 81 TYPQGSWEKVI 91 (96)
T ss_pred eCCCCCeEEEE
Confidence 54 55544443
No 346
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.60 E-value=0.0079 Score=55.39 Aligned_cols=70 Identities=20% Similarity=0.390 Sum_probs=44.6
Q ss_pred EEecCCeEEEEEEEee-eC-CCeEEEEECCeecCCCCc---eEEeecCe-----EEEEeeeccCCCeEEEEEEEeCCCCc
Q psy11143 240 TYSTGSTSRITCLVEG-HP-LPQMTWFHDGNSLDSDDH---VTYEHDGF-----VLVLNGVRESDAGVYNCVAQNSEGSA 309 (940)
Q Consensus 240 ~v~~G~~v~L~C~v~G-~P-~p~ItW~k~g~~l~~~~~---~~~~~~g~-----sL~I~~v~~~DsG~YtC~A~N~~Gs~ 309 (940)
....++.++|.|.+.| +| ...|+|++||..+..+.. .....+++ .|.+..-...+...|+|.+.+.....
T Consensus 13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l~~ 92 (100)
T cd07699 13 ELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGLSS 92 (100)
T ss_pred HHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCCCC
Confidence 3445778999999999 45 348999999999853311 11122332 14444333445678999999876433
No 347
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=96.59 E-value=0.015 Score=52.74 Aligned_cols=65 Identities=17% Similarity=0.400 Sum_probs=42.4
Q ss_pred ecCCeEEEEEEeec-cCC-CeEEEEECCEeecCCCC---eEEEeeceE--EEEcccccCCCeEEEEEEEeCCC
Q psy11143 58 STGSTSRITCLVEG-HPL-PQMTWFHDGNSLDSDDH---VTYEHDGFV--LVLNGVRESDAGVYNCVAQNSEG 123 (940)
Q Consensus 58 ~eGesv~L~C~v~g-~P~-p~V~W~kdg~~I~~~~~---~~~~~~gs~--L~I~~v~~~DsG~YtC~a~n~~g 123 (940)
..|...+|.|.+.| +|. ..|+|+|||+.+. ... .....+++. .....+...+...|+|.+.+...
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~l 84 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNSM 84 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECCC
Confidence 45777899999999 453 4889999999876 321 111133332 11112456788899999988643
No 348
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=96.46 E-value=0.0087 Score=55.72 Aligned_cols=64 Identities=22% Similarity=0.455 Sum_probs=44.7
Q ss_pred eecCCCeEEEEEeecCcC-CCeEEEEeCCee--------e---c-----------cCCcEEEee-----eceEEEecCCC
Q psy11143 333 RAPAGSSVEIPCKPDGEP-LPRISWSKDEAE--------F---V-----------EDRNHKIHR-----TGSLRLYNIGP 384 (940)
Q Consensus 333 ~v~~G~~vtL~C~v~g~P-~p~i~W~k~g~~--------i---~-----------~~~~~~i~~-----~~sL~I~~v~~ 384 (940)
.+.+|++|+|.|.+.+.. ...+.|++.... + . ...++.+.. ...|+|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 478899999999987643 458999974211 0 0 023444321 12599999999
Q ss_pred CCCeEEEEEEEe
Q psy11143 385 QDSGLYRCTASN 396 (940)
Q Consensus 385 ~D~G~YtC~A~N 396 (940)
+|+|.|.|...+
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999999864
No 349
>KOG0613|consensus
Probab=96.46 E-value=0.012 Score=73.84 Aligned_cols=208 Identities=16% Similarity=0.121 Sum_probs=124.5
Q ss_pred EEEEcccccCCCeEEEEEEEeCCCceEEEEEEEEecc---cC--------------CeeEecCCceeecCCCcEEEEEEe
Q psy11143 100 VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGH---RA--------------PRLVVKPFDMRAPAGSSVEIPCKP 162 (940)
Q Consensus 100 ~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V~~~---~~--------------P~~~~~p~~~~v~~Ge~vtL~C~v 162 (940)
...|.+-...+.+.|+|...+..+.....+...+... .. +........+.+..+..+++.|..
T Consensus 279 t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~ 358 (1205)
T KOG0613|consen 279 TKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTAL 358 (1205)
T ss_pred cccccccCCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccc
Confidence 3566666777888899998888777666433332211 00 111112234456667789999999
Q ss_pred CCCCCCe-EEEeeCCeeccccCceEE-----eeeceEEEeecccCCCceEEEEEEcCCcceeeeeeeeecCC----CCee
Q psy11143 163 DGEPLPR-ISWSKDEAEFVEDRNHKI-----HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGA----PPIF 232 (940)
Q Consensus 163 ~g~P~p~-ItW~k~g~~i~~~~~~~~-----~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~~L~V~~~----~p~~ 232 (940)
.+.+.+. +.|++++........... .....+.|..+...+.+.|.|.|.|..|.........|... .+..
T Consensus 359 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~~~~ 438 (1205)
T KOG0613|consen 359 SGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQPPK 438 (1205)
T ss_pred cCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchhhcccccCCCCCcc
Confidence 9988885 999987655543321111 12235788888999999999999999887655544445432 2222
Q ss_pred eeCCCeeEEecC--CeEEEEEEEeeeCCC--eEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCC
Q psy11143 233 IQRPVSTTYSTG--STSRITCLVEGHPLP--QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG 307 (940)
Q Consensus 233 ~~~p~~~~v~~G--~~v~L~C~v~G~P~p--~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~G 307 (940)
.......+...+ +.+.+.|.+.+.+.+ .++|++++..............-.+|.+.-....+.|.|.-......+
T Consensus 439 ~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~~s~~l~r~~~tslLlk~~~~~~~A~~~~a~~~~~~ 517 (1205)
T KOG0613|consen 439 FKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLSDRSVTLTRDVLTSLLLKVASLSDGAQYTRALRTLQG 517 (1205)
T ss_pred ccccccccccccCCcccccccCCCCccccceeEeeccCCcccccccccccccchhhheeeccCCCccchhhhhhhccCC
Confidence 223333333444 788899998887755 556666655443221111111223367777778888888655444333
No 350
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.43 E-value=0.011 Score=54.08 Aligned_cols=74 Identities=14% Similarity=0.252 Sum_probs=44.5
Q ss_pred CCCcEEEecCCeEEEEEEeecc--CC-CeEEEEECCEeecC-C-CCeEEEeeceE-----EEEcccccCCCeEEEEEEEe
Q psy11143 51 RPVSTTYSTGSTSRITCLVEGH--PL-PQMTWFHDGNSLDS-D-DHVTYEHDGFV-----LVLNGVRESDAGVYNCVAQN 120 (940)
Q Consensus 51 ~p~~~~V~eGesv~L~C~v~g~--P~-p~V~W~kdg~~I~~-~-~~~~~~~~gs~-----L~I~~v~~~DsG~YtC~a~n 120 (940)
.|....+..|+.++|.|.+.|. |. ..|+|+|+|..... . .......+++. |.+..-...+.-.|+|.|.+
T Consensus 5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H 84 (96)
T cd07696 5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTH 84 (96)
T ss_pred CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEEC
Confidence 3444556778999999999987 43 38899998753321 1 11111123322 34443333345689999998
Q ss_pred CCCc
Q psy11143 121 SEGS 124 (940)
Q Consensus 121 ~~g~ 124 (940)
....
T Consensus 85 ~~l~ 88 (96)
T cd07696 85 PDLP 88 (96)
T ss_pred CCCC
Confidence 7543
No 351
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=96.40 E-value=0.009 Score=55.36 Aligned_cols=64 Identities=23% Similarity=0.398 Sum_probs=44.5
Q ss_pred eecCCCeEEEEEeecCcCCCeEEEEeCCe----e---ec---c------------CCcEEEee---eceEEEecCCCCCC
Q psy11143 333 RAPAGSSVEIPCKPDGEPLPRISWSKDEA----E---FV---E------------DRNHKIHR---TGSLRLYNIGPQDS 387 (940)
Q Consensus 333 ~v~~G~~vtL~C~v~g~P~p~i~W~k~g~----~---i~---~------------~~~~~i~~---~~sL~I~~v~~~D~ 387 (940)
.+.+|++|+|.|.+...-...+.|+|... . +. . ..++.+.. ..+|.|.+++.+|+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs 81 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE 81 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence 36789999999998755455799997431 1 10 0 12333322 23699999999999
Q ss_pred eEEEEEEEe
Q psy11143 388 GLYRCTASN 396 (940)
Q Consensus 388 G~YtC~A~N 396 (940)
|+|.|.+.+
T Consensus 82 gtY~Ca~~~ 90 (104)
T cd05720 82 GYYFCSVAS 90 (104)
T ss_pred EEEEEEEcc
Confidence 999998864
No 352
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=96.37 E-value=0.041 Score=50.04 Aligned_cols=62 Identities=18% Similarity=0.427 Sum_probs=40.7
Q ss_pred cCCeEEEEEEEeee-CCC-eEEEEECCeecCCCCc---eEEeecCe-----EEEEeeeccCCCeEEEEEEEeCCC
Q psy11143 243 TGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH---VTYEHDGF-----VLVLNGVRESDAGVYNCVAQNSEG 307 (940)
Q Consensus 243 ~G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~~~~~---~~~~~~g~-----sL~I~~v~~~DsG~YtC~A~N~~G 307 (940)
.++..+|.|.+.|+ |.. .++|.+||..+..+.. .....+++ .|.+ ...+...|+|.+.+...
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v---~~~~~~~ytC~V~H~~l 85 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNF---TPEEGDIYSCIVEHWGL 85 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEE---ECCCCCeEEEEEEeCCC
Confidence 35668999999994 543 8899999998764321 12222332 1333 34566699999988753
No 353
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=96.35 E-value=0.017 Score=54.54 Aligned_cols=77 Identities=14% Similarity=0.329 Sum_probs=48.9
Q ss_pred CCCcEEEecCCeEEEEEEeec-cCC-CeEEEEECCEeecCCCC---eEEEee-c-----eEEEEcccccCC-CeEEEEEE
Q psy11143 51 RPVSTTYSTGSTSRITCLVEG-HPL-PQMTWFHDGNSLDSDDH---VTYEHD-G-----FVLVLNGVRESD-AGVYNCVA 118 (940)
Q Consensus 51 ~p~~~~V~eGesv~L~C~v~g-~P~-p~V~W~kdg~~I~~~~~---~~~~~~-g-----s~L~I~~v~~~D-sG~YtC~a 118 (940)
.|....+.+++.++|.|.+.| +|. .+|+|+|||..+..... .....+ + +.|.|......+ ...|+|.+
T Consensus 9 ~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V 88 (115)
T cd05769 9 PPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIV 88 (115)
T ss_pred CcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEE
Confidence 344444556788999999998 565 48999999988764321 111111 2 225555444434 56899999
Q ss_pred EeCCCceEE
Q psy11143 119 QNSEGSAES 127 (940)
Q Consensus 119 ~n~~g~~~~ 127 (940)
.+.......
T Consensus 89 ~H~g~~~~~ 97 (115)
T cd05769 89 QFYGGTDTD 97 (115)
T ss_pred EEeCCccce
Confidence 987655443
No 354
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.30 E-value=0.012 Score=54.30 Aligned_cols=69 Identities=26% Similarity=0.459 Sum_probs=42.6
Q ss_pred EEecCCeEEEEEEEeee-CCC-eEEEEECCeecCCCCceE--E--ee--cCe-----EEEEeeeccCCCeEEEEEEEeCC
Q psy11143 240 TYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDHVT--Y--EH--DGF-----VLVLNGVRESDAGVYNCVAQNSE 306 (940)
Q Consensus 240 ~v~~G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~~~~~~~--~--~~--~g~-----sL~I~~v~~~DsG~YtC~A~N~~ 306 (940)
.+..|..++|.|.+.|+ |.. .++|+++|.++....... . .. +++ .|.|..-...+...|+|.+.+..
T Consensus 12 ~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~ 91 (102)
T cd05768 12 ELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEA 91 (102)
T ss_pred HhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCC
Confidence 34457889999999995 443 789999999875432111 1 11 232 14343222345568999999875
Q ss_pred CC
Q psy11143 307 GS 308 (940)
Q Consensus 307 Gs 308 (940)
..
T Consensus 92 l~ 93 (102)
T cd05768 92 LP 93 (102)
T ss_pred CC
Confidence 43
No 355
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=96.28 E-value=0.049 Score=49.52 Aligned_cols=68 Identities=24% Similarity=0.381 Sum_probs=43.6
Q ss_pred ecCCeEEEEEEEeee-CCC-eEEEEECCeecCCCC---ceEEeecCeE--EEEeeeccCCCeEEEEEEEeCCCCc
Q psy11143 242 STGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDD---HVTYEHDGFV--LVLNGVRESDAGVYNCVAQNSEGSA 309 (940)
Q Consensus 242 ~~G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~~~~---~~~~~~~g~s--L~I~~v~~~DsG~YtC~A~N~~Gs~ 309 (940)
..|+.++|.|.+.|+ |.. .++|+++|..+.... ......+++- ...-.+...+...|+|.+.+.....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l~~ 86 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSLQE 86 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCCCC
Confidence 357889999999994 544 889999999876531 1112222221 1111334456678999999876543
No 356
>KOG0613|consensus
Probab=96.25 E-value=0.046 Score=68.90 Aligned_cols=176 Identities=14% Similarity=0.092 Sum_probs=118.5
Q ss_pred eCCCeeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEE
Q psy11143 234 QRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVA 313 (940)
Q Consensus 234 ~~p~~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~ 313 (940)
..+.......++...+.|.+.+.+.+.+.|+.+....... ...+.++.|.+......+.|+|...+..+.....+
T Consensus 234 ~~~~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~-----~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v 308 (1205)
T KOG0613|consen 234 SAPSMSVTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRK-----HKGGNTKTIQNDGPEPELSWTVADKRQGCQDRFKV 308 (1205)
T ss_pred CccccccccchhheeeeEEeecCCCchHHHHhcchhhhcc-----cCCCccccccccCCccccceeeecccCCcccceee
Confidence 3344556667888899999999888888888765433222 22344577777778888899999888887776554
Q ss_pred EEEEee--------------ccCCe---EEEcCCceeecCCCeEEEEEeecCcCCC-eEEEEeCCeeeccCCcEEEe---
Q psy11143 314 MIRING--------------HRAPR---LVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKIH--- 372 (940)
Q Consensus 314 ~l~V~~--------------~~~P~---i~~~p~~~~v~~G~~vtL~C~v~g~P~p-~i~W~k~g~~i~~~~~~~i~--- 372 (940)
...+.. ..+|. .......+.+..+..+++.|...+.+.| .++|+.++.....+..-.+.
T Consensus 309 ~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1205)
T KOG0613|consen 309 TEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVG 388 (1205)
T ss_pred eEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCchheeecccccccccccccccccc
Confidence 433321 01111 1111123455677889999999999998 49999887655433211111
Q ss_pred --eeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecCCC
Q psy11143 373 --RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENS 414 (940)
Q Consensus 373 --~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~~ 414 (940)
..-.+.|..+...+.+.|.|.|.|..|........+|.....
T Consensus 389 ~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~ 432 (1205)
T KOG0613|consen 389 TVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMP 432 (1205)
T ss_pred cccCcchhhhhcCcccccccccceeccCCcccccchhhcccccC
Confidence 122578888999999999999999999887777766666543
No 357
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=96.24 E-value=0.022 Score=51.81 Aligned_cols=67 Identities=13% Similarity=0.190 Sum_probs=42.6
Q ss_pred CCCeEEEEEeecCc-CCC-eEEEEeCCeeeccCC---cE------EEeeeceEEEecCCCCCCeEEEEEEEeCCeeEE
Q psy11143 336 AGSSVEIPCKPDGE-PLP-RISWSKDEAEFVEDR---NH------KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV 402 (940)
Q Consensus 336 ~G~~vtL~C~v~g~-P~p-~i~W~k~g~~i~~~~---~~------~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~ 402 (940)
....++|.|.+.|. |.. .|+|.++|..+.... .. .....+.|.+..-...+...|+|.|........
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~~ 90 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTFE 90 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeeee
Confidence 45679999999985 553 899999998763221 01 112233455554333456789999998765433
No 358
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=96.20 E-value=0.016 Score=54.99 Aligned_cols=69 Identities=20% Similarity=0.388 Sum_probs=47.1
Q ss_pred cCCceeecCCCcEEEEEEeCCCC--CCeEEEee--CCeec------cc-----------cCceEEeee-----ceEEEee
Q psy11143 144 KPFDMRAPAGSSVEIPCKPDGEP--LPRISWSK--DEAEF------VE-----------DRNHKIHRT-----GSLRLYN 197 (940)
Q Consensus 144 ~p~~~~v~~Ge~vtL~C~v~g~P--~p~ItW~k--~g~~i------~~-----------~~~~~~~~~-----~sL~I~~ 197 (940)
.|....+.+|++++|.|...+.. ...+.|++ .|... .. ..++..... ..|.|.+
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~ 82 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS 82 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence 45667889999999999876432 45699998 22211 00 123333211 2599999
Q ss_pred cccCCCceEEEEEEc
Q psy11143 198 IGPQDSGLYRCTASN 212 (940)
Q Consensus 198 v~~~DsG~YtC~a~N 212 (940)
++.+|+|.|.|.+..
T Consensus 83 ~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 83 LTPEDTAVYYCARGL 97 (117)
T ss_pred CCHHHCEEEEEEEEc
Confidence 999999999998864
No 359
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=96.18 E-value=0.024 Score=53.90 Aligned_cols=71 Identities=14% Similarity=0.242 Sum_probs=47.9
Q ss_pred CCCeeEEecCCeEEEEEEEeeeC------CCeEEEEECCe-----e-c---C--------CCCceEEe----ecCeEEEE
Q psy11143 235 RPVSTTYSTGSTSRITCLVEGHP------LPQMTWFHDGN-----S-L---D--------SDDHVTYE----HDGFVLVL 287 (940)
Q Consensus 235 ~p~~~~v~~G~~v~L~C~v~G~P------~p~ItW~k~g~-----~-l---~--------~~~~~~~~----~~g~sL~I 287 (940)
.|....+.+|+.|+|.|...... ...+.|++... . + . ...++... ....+|.|
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I 84 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI 84 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence 46667889999999999865322 24689998531 1 0 0 01233331 12245999
Q ss_pred eeeccCCCeEEEEEEEeC
Q psy11143 288 NGVRESDAGVYNCVAQNS 305 (940)
Q Consensus 288 ~~v~~~DsG~YtC~A~N~ 305 (940)
.+++.+|+|.|.|.+...
T Consensus 85 ~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 85 SDAQPEDSGKYFFRVELG 102 (119)
T ss_pred ccCChhhCeEEEEEEEcC
Confidence 999999999999998764
No 360
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=96.17 E-value=0.062 Score=48.78 Aligned_cols=64 Identities=16% Similarity=0.408 Sum_probs=42.0
Q ss_pred ecCCeEEEEEEEeee-CCC-eEEEEECCeecCCCCc---eEEeecCeEEEE---eeeccCCCeEEEEEEEeCCC
Q psy11143 242 STGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH---VTYEHDGFVLVL---NGVRESDAGVYNCVAQNSEG 307 (940)
Q Consensus 242 ~~G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~~~~~---~~~~~~g~sL~I---~~v~~~DsG~YtC~A~N~~G 307 (940)
..|...+|.|.+.|+ |.. .++|++||..+. +.. .....+++ +.+ ..+...+...|+|.+.+...
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~t-yq~~s~l~~~~~~~~~ysC~V~H~~l 84 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWT-FYLLKSTEFTPTKGDEYACRVRHNSM 84 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCC-EEEEEEEEECCCCCCeEEEEEEECCC
Confidence 346677999999995 433 889999999886 321 11223332 222 23456677789999998643
No 361
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=96.13 E-value=0.025 Score=49.03 Aligned_cols=59 Identities=14% Similarity=0.284 Sum_probs=38.7
Q ss_pred eEEEEEeecCc-CC-CeEEEEeCCeeeccCCc---E------EEeeeceEEEecCCCCCCeEEEEEEEeC
Q psy11143 339 SVEIPCKPDGE-PL-PRISWSKDEAEFVEDRN---H------KIHRTGSLRLYNIGPQDSGLYRCTASNL 397 (940)
Q Consensus 339 ~vtL~C~v~g~-P~-p~i~W~k~g~~i~~~~~---~------~i~~~~sL~I~~v~~~D~G~YtC~A~N~ 397 (940)
.++|.|.+.|. |. ..++|+|+|..+..+.. . .....+.|.|......+...|+|.|...
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence 36899999986 55 49999999986433211 1 1111234555554556777899999875
No 362
>smart00406 IGv Immunoglobulin V-Type.
Probab=96.06 E-value=0.017 Score=50.02 Aligned_cols=57 Identities=23% Similarity=0.512 Sum_probs=36.7
Q ss_pred eEEEEEEeeccCC--CeEEEEECCE-----eec-------------CCCCeEEEee----ceEEEEcccccCCCeEEEEE
Q psy11143 62 TSRITCLVEGHPL--PQMTWFHDGN-----SLD-------------SDDHVTYEHD----GFVLVLNGVRESDAGVYNCV 117 (940)
Q Consensus 62 sv~L~C~v~g~P~--p~V~W~kdg~-----~I~-------------~~~~~~~~~~----gs~L~I~~v~~~DsG~YtC~ 117 (940)
+|.|.|.+..... ..+.|++... .+. ...++.+... ...|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 4789999876544 3789987431 110 0122222221 24589999999999999996
Q ss_pred E
Q psy11143 118 A 118 (940)
Q Consensus 118 a 118 (940)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 4
No 363
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=96.01 E-value=0.051 Score=47.97 Aligned_cols=63 Identities=25% Similarity=0.509 Sum_probs=43.0
Q ss_pred cCCeEEEEEEeec-cCCC-eEEEEECCEeecCCCCeEE---Eeece-----EEEEcccccCCCeEEEEEEEeCCCc
Q psy11143 59 TGSTSRITCLVEG-HPLP-QMTWFHDGNSLDSDDHVTY---EHDGF-----VLVLNGVRESDAGVYNCVAQNSEGS 124 (940)
Q Consensus 59 eGesv~L~C~v~g-~P~p-~V~W~kdg~~I~~~~~~~~---~~~gs-----~L~I~~v~~~DsG~YtC~a~n~~g~ 124 (940)
.++.++|.|.+.+ +|.. .|+|+++|..+........ ..+|. .|.+. ..+...|+|.+.+....
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP 79 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence 4889999999998 5544 8999999998864332111 12332 23444 56667899999987654
No 364
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=95.88 E-value=0.048 Score=49.76 Aligned_cols=68 Identities=13% Similarity=0.264 Sum_probs=40.4
Q ss_pred CCcEEEecCCeEEEEEEeec-cCC-CeEEEEECCEeecCCCCe--EEEeece-----EEEEcccccC-CCeEEEEEEEeC
Q psy11143 52 PVSTTYSTGSTSRITCLVEG-HPL-PQMTWFHDGNSLDSDDHV--TYEHDGF-----VLVLNGVRES-DAGVYNCVAQNS 121 (940)
Q Consensus 52 p~~~~V~eGesv~L~C~v~g-~P~-p~V~W~kdg~~I~~~~~~--~~~~~gs-----~L~I~~v~~~-DsG~YtC~a~n~ 121 (940)
|....+..+..++|.|.+.| +|. .+|+|++||..+..+... ....+++ .|.|. .+ ....|+|.+.+.
T Consensus 8 ps~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt---~~~~~~~ysC~V~H~ 84 (96)
T cd07697 8 PSKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVT---KDSLGKKFRCIYKHE 84 (96)
T ss_pred CCHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEEC---chhCCCeEEEEEEEC
Confidence 33344455678999999999 453 488999999986532110 0111111 12333 33 234599999985
Q ss_pred C
Q psy11143 122 E 122 (940)
Q Consensus 122 ~ 122 (940)
.
T Consensus 85 g 85 (96)
T cd07697 85 G 85 (96)
T ss_pred C
Confidence 4
No 365
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=95.80 E-value=0.04 Score=52.02 Aligned_cols=76 Identities=14% Similarity=0.352 Sum_probs=47.0
Q ss_pred CCeeEEecCCeEEEEEEEeee-CCC-eEEEEECCeecCCCCc---eEEeec-Ce-----EEEEeeeccCC-CeEEEEEEE
Q psy11143 236 PVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH---VTYEHD-GF-----VLVLNGVRESD-AGVYNCVAQ 303 (940)
Q Consensus 236 p~~~~v~~G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~~~~~---~~~~~~-g~-----sL~I~~v~~~D-sG~YtC~A~ 303 (940)
|....+..++.++|.|.+.|+ |.. .|+|++||..+..... .....+ ++ .|.|......+ ...|+|.+.
T Consensus 10 ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~ 89 (115)
T cd05769 10 PSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQ 89 (115)
T ss_pred cChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEE
Confidence 333344456789999999995 553 8999999988764321 111222 22 14444333333 568999999
Q ss_pred eCCCCcee
Q psy11143 304 NSEGSAES 311 (940)
Q Consensus 304 N~~Gs~~~ 311 (940)
+.......
T Consensus 90 H~g~~~~~ 97 (115)
T cd05769 90 FYGGTDTD 97 (115)
T ss_pred EeCCccce
Confidence 88655543
No 366
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=95.63 E-value=0.063 Score=48.93 Aligned_cols=65 Identities=20% Similarity=0.297 Sum_probs=40.2
Q ss_pred CCCeEEEEEee-cCcCCCeEEEEeCCeeec-----cCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCee
Q psy11143 336 AGSSVEIPCKP-DGEPLPRISWSKDEAEFV-----EDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE 400 (940)
Q Consensus 336 ~G~~vtL~C~v-~g~P~p~i~W~k~g~~i~-----~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~ 400 (940)
......+.|.+ .|.|.+.|+|+++..... ....-.....+.|.+......+.-.|+|.|.|..-.
T Consensus 14 ~~~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~ 84 (95)
T cd05719 14 GEPVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQ 84 (95)
T ss_pred CCccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence 34567899998 588999999999721100 011111122345666555555666799999997643
No 367
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.61 E-value=0.045 Score=49.97 Aligned_cols=71 Identities=15% Similarity=0.271 Sum_probs=41.8
Q ss_pred cCCceeecCCCcEEEEEEeCCC--CCC-eEEEeeCCeecccc--Cce------EEeeeceEEEeecccCCCceEEEEEEc
Q psy11143 144 KPFDMRAPAGSSVEIPCKPDGE--PLP-RISWSKDEAEFVED--RNH------KIHRTGSLRLYNIGPQDSGLYRCTASN 212 (940)
Q Consensus 144 ~p~~~~v~~Ge~vtL~C~v~g~--P~p-~ItW~k~g~~i~~~--~~~------~~~~~~sL~I~~v~~~DsG~YtC~a~N 212 (940)
.|....+..|+.++|.|.+.|. |.. .++|.++++..... ... .+...+.|.+..-...+.-.|+|.+..
T Consensus 5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H 84 (96)
T cd07696 5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTH 84 (96)
T ss_pred CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEEC
Confidence 3444456678999999999987 433 78999986433210 011 111222344443333344589999987
Q ss_pred CC
Q psy11143 213 LL 214 (940)
Q Consensus 213 ~~ 214 (940)
..
T Consensus 85 ~~ 86 (96)
T cd07696 85 PD 86 (96)
T ss_pred CC
Confidence 54
No 368
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=95.56 E-value=0.12 Score=45.58 Aligned_cols=64 Identities=25% Similarity=0.512 Sum_probs=43.8
Q ss_pred cCCeEEEEEEEeee-CCC-eEEEEECCeecCCCCceE--E-eecCe-----EEEEeeeccCCCeEEEEEEEeCCCCc
Q psy11143 243 TGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDHVT--Y-EHDGF-----VLVLNGVRESDAGVYNCVAQNSEGSA 309 (940)
Q Consensus 243 ~G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~~~~~~~--~-~~~g~-----sL~I~~v~~~DsG~YtC~A~N~~Gs~ 309 (940)
.+..++|.|.+.++ |.. .|+|+++|..+....... . ..+|. .|.+. ..+...|+|.+.+.....
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~~ 80 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLPE 80 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSSS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCCC
Confidence 38899999999985 544 899999999886543322 1 22332 13333 566668999999876543
No 369
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=95.52 E-value=0.018 Score=48.05 Aligned_cols=52 Identities=25% Similarity=0.505 Sum_probs=36.2
Q ss_pred ecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeC
Q psy11143 58 STGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNS 121 (940)
Q Consensus 58 ~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~ 121 (940)
-.|.+|+|+|...+. .+.|++++..+.... ..+.+.+-. ++.|.|+|.+.+.
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~~--------~~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGSD--------EKYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCCccCCCCC--------ceEEeeccC-CCCceEEEEeCCC
Confidence 368999999986532 399999997665321 123444444 8899999999643
No 370
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=95.50 E-value=0.085 Score=48.07 Aligned_cols=73 Identities=15% Similarity=0.246 Sum_probs=43.4
Q ss_pred cCCeEEEEEEe-eccCCCeEEEEECCEeecCCCCeEEEeec-----eEEEEcccccCCCeEEEEEEEeCCCceEEEEEEE
Q psy11143 59 TGSTSRITCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDG-----FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR 132 (940)
Q Consensus 59 eGesv~L~C~v-~g~P~p~V~W~kdg~~I~~~~~~~~~~~g-----s~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~ 132 (940)
......+.|.+ .|+|.+.|+|+++..... ........+| +.|.+......|.-.|+|.+.+..........++
T Consensus 14 ~~~~~va~C~s~~gkP~a~ItW~~~~~~~~-~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~~~~ 92 (95)
T cd05719 14 GEPVTVATCVSANGKPPATISWETTLGGEA-ETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRFSVT 92 (95)
T ss_pred CCccEEEEEECCCCcCCCEEEEEeCCCCcc-eeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEE
Confidence 34577889998 579999999999721110 0011111222 2356655555566689999999875544443333
No 371
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.38 E-value=0.12 Score=47.20 Aligned_cols=63 Identities=19% Similarity=0.381 Sum_probs=38.3
Q ss_pred cCCeEEEEEEeec-cCC-CeEEEEECCEeecCCC---CeEEEeece-----EEEEcccccCCCeEEEEEEEeCC
Q psy11143 59 TGSTSRITCLVEG-HPL-PQMTWFHDGNSLDSDD---HVTYEHDGF-----VLVLNGVRESDAGVYNCVAQNSE 122 (940)
Q Consensus 59 eGesv~L~C~v~g-~P~-p~V~W~kdg~~I~~~~---~~~~~~~gs-----~L~I~~v~~~DsG~YtC~a~n~~ 122 (940)
.++.++|.|.+.| +|. .+|+|+|||+. .... ......++. .|.+........-.|+|.+.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 4667999999998 453 48899999997 3221 011111232 23444332223567999999865
No 372
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=95.36 E-value=0.046 Score=45.66 Aligned_cols=52 Identities=29% Similarity=0.520 Sum_probs=36.2
Q ss_pred cCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeC
Q psy11143 335 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNL 397 (940)
Q Consensus 335 ~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~ 397 (940)
..|.+|+|+|...+. .+.|.+++..+.... ..+.+.+.. ++.|.|+|.+.+.
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~~-------~~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGSD-------EKYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCCccCCCCC-------ceEEeeccC-CCCceEEEEeCCC
Confidence 458899999976522 399999986554322 234444555 8899999999653
No 373
>smart00406 IGv Immunoglobulin V-Type.
Probab=95.36 E-value=0.038 Score=47.77 Aligned_cols=56 Identities=27% Similarity=0.503 Sum_probs=37.5
Q ss_pred eEEEEEeecCcCCC--eEEEEeCCe-----eec-------------cCCcEEEeee-----ceEEEecCCCCCCeEEEEE
Q psy11143 339 SVEIPCKPDGEPLP--RISWSKDEA-----EFV-------------EDRNHKIHRT-----GSLRLYNIGPQDSGLYRCT 393 (940)
Q Consensus 339 ~vtL~C~v~g~P~p--~i~W~k~g~-----~i~-------------~~~~~~i~~~-----~sL~I~~v~~~D~G~YtC~ 393 (940)
+|+|.|.+.....+ .+.|++... .+. ...++.+... .+|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 47899988765543 789987431 010 1234444332 3699999999999999996
Q ss_pred E
Q psy11143 394 A 394 (940)
Q Consensus 394 A 394 (940)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 3
No 374
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=95.31 E-value=0.093 Score=47.89 Aligned_cols=70 Identities=14% Similarity=0.260 Sum_probs=40.7
Q ss_pred CCeeEEecCCeEEEEEEEeee-CCC-eEEEEECCeecCCCCce--EEeecCeEEEEe---eeccC-CCeEEEEEEEeCC
Q psy11143 236 PVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDHV--TYEHDGFVLVLN---GVRES-DAGVYNCVAQNSE 306 (940)
Q Consensus 236 p~~~~v~~G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~~~~~~--~~~~~g~sL~I~---~v~~~-DsG~YtC~A~N~~ 306 (940)
|....+..+..++|.|.+.|. |.. .++|.++|..+..+... ....++ ++.+. .+... ....|+|.+.+..
T Consensus 8 ps~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~d-ty~~~S~L~vt~~~~~~~ysC~V~H~g 85 (96)
T cd07697 8 PSKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDND-VYSTTSWLTVTKDSLGKKFRCIYKHEG 85 (96)
T ss_pred CCHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCC-EEEEEEEEEECchhCCCeEEEEEEECC
Confidence 333344456779999999995 543 78999999987543111 111112 22211 22333 2345999999854
No 375
>PHA02633 hypothetical protein; Provisional
Probab=95.28 E-value=0.043 Score=45.03 Aligned_cols=40 Identities=13% Similarity=0.243 Sum_probs=34.6
Q ss_pred cccEEEECCCCCCCCeEEEEEEEcCCceEEEEEEEEEeCC
Q psy11143 6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAP 45 (940)
Q Consensus 6 s~~tL~I~~v~~sDsG~Y~C~a~n~~g~~~~~v~l~V~~p 45 (940)
+...|.|-++..+|+|.|.|+++|..-....++.++|...
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~ 55 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR 55 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence 5678999999999999999999998888888888887643
No 376
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=95.23 E-value=0.088 Score=47.96 Aligned_cols=70 Identities=13% Similarity=0.236 Sum_probs=42.2
Q ss_pred CeEEEEEEee-ccCCCeEEEEECCEeecCCCCeEEEeec-----eEEEEcccccCCCeEEEEEEEeCCCceEEEEEE
Q psy11143 61 STSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEHDG-----FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMI 131 (940)
Q Consensus 61 esv~L~C~v~-g~P~p~V~W~kdg~~I~~~~~~~~~~~g-----s~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L 131 (940)
+.+.++|.+. |.|.+.|+|+++..... ........++ +.|.+......|...|+|++.+..........+
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~-~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~ 91 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNA-NTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPV 91 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCe-eEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence 4788999885 68999999999722111 0011111222 235665555566678999999976544443333
No 377
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.12 E-value=0.04 Score=50.53 Aligned_cols=73 Identities=23% Similarity=0.432 Sum_probs=43.2
Q ss_pred CCCcEEEecCCeEEEEEEeec-c-CC-CeEEEEECCEeecCC-CCeEEEeec-----eEEEEcccccCCCeEEEEEEEeC
Q psy11143 51 RPVSTTYSTGSTSRITCLVEG-H-PL-PQMTWFHDGNSLDSD-DHVTYEHDG-----FVLVLNGVRESDAGVYNCVAQNS 121 (940)
Q Consensus 51 ~p~~~~V~eGesv~L~C~v~g-~-P~-p~V~W~kdg~~I~~~-~~~~~~~~g-----s~L~I~~v~~~DsG~YtC~a~n~ 121 (940)
.|.......+..++|.|.+.+ + |. ..|+|.++|.. ... .......++ +.|.+..-...-...|+|.|.+.
T Consensus 10 pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~ 88 (99)
T cd04986 10 RPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHP 88 (99)
T ss_pred CcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECC
Confidence 344444557889999999998 4 43 48999999875 111 011111233 22444432333345699999887
Q ss_pred CCc
Q psy11143 122 EGS 124 (940)
Q Consensus 122 ~g~ 124 (940)
...
T Consensus 89 ~l~ 91 (99)
T cd04986 89 EGD 91 (99)
T ss_pred Ccc
Confidence 543
No 378
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=94.95 E-value=0.046 Score=46.00 Aligned_cols=49 Identities=27% Similarity=0.427 Sum_probs=37.4
Q ss_pred CCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEe
Q psy11143 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 396 (940)
Q Consensus 337 G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N 396 (940)
.+.|.|+|.+. .+|.|++ |..+.... +.+|.+.....+-.|.|.|.+++
T Consensus 6 ~~~V~L~C~~~----tsi~W~k-G~~~~~~~------~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNGA----TNITWKK-GKEILEVS------NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecCC----CcEEEec-Cccccccc------ccEEeccCcccCCCcceEecCcc
Confidence 45799999762 5699999 65543221 45788888888999999999988
No 379
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=94.93 E-value=0.11 Score=47.45 Aligned_cols=70 Identities=19% Similarity=0.358 Sum_probs=45.3
Q ss_pred cEEEecCCeEEE-EEEe-eccCCCeEEEEECCEeecCCCCeEEEeece-----EEEEcccccCCCeEEEEEEEeCCCc
Q psy11143 54 STTYSTGSTSRI-TCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDGF-----VLVLNGVRESDAGVYNCVAQNSEGS 124 (940)
Q Consensus 54 ~~~V~eGesv~L-~C~v-~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs-----~L~I~~v~~~DsG~YtC~a~n~~g~ 124 (940)
...+.+|+.+.+ .|.+ .|.|++.|+|+.+..... ........+|+ .+.+......|.-.++|.+.+..-.
T Consensus 10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~-~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~ 86 (97)
T cd07704 10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS-ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQ 86 (97)
T ss_pred eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc-ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccC
Confidence 456788999999 9997 568999999998743221 11111112222 2455555566777899999987543
No 380
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=94.92 E-value=0.16 Score=46.24 Aligned_cols=63 Identities=21% Similarity=0.449 Sum_probs=38.2
Q ss_pred cCCeEEEEEEEeee-CCC-eEEEEECCeecCCCCc---eEEeecCe-----EEEEeeeccCCCeEEEEEEEeCC
Q psy11143 243 TGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH---VTYEHDGF-----VLVLNGVRESDAGVYNCVAQNSE 306 (940)
Q Consensus 243 ~G~~v~L~C~v~G~-P~p-~ItW~k~g~~l~~~~~---~~~~~~g~-----sL~I~~v~~~DsG~YtC~A~N~~ 306 (940)
.++.++|.|.+.|+ |.. .|+|+++|.. ..... .....++. .|.+..-.......|+|.+.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 46679999999995 443 8899999997 32211 11111332 13333322223567999999875
No 381
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=94.78 E-value=0.16 Score=46.45 Aligned_cols=74 Identities=18% Similarity=0.335 Sum_probs=46.5
Q ss_pred CCeeEEecCCeEEE-EEEE-eeeCCCeEEEEECCeecCCCCceEEeecCe-----EEEEeeeccCCCeEEEEEEEeCCCC
Q psy11143 236 PVSTTYSTGSTSRI-TCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDGF-----VLVLNGVRESDAGVYNCVAQNSEGS 308 (940)
Q Consensus 236 p~~~~v~~G~~v~L-~C~v-~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~-----sL~I~~v~~~DsG~YtC~A~N~~Gs 308 (940)
.....+.+|+.+.+ .|.+ .|.|.+.|+|+.+..... ........+|+ .|.+......|.-.++|++.+..-.
T Consensus 8 ~~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~-~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~ 86 (97)
T cd07704 8 GPSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS-ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQ 86 (97)
T ss_pred CCeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc-ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccC
Confidence 34456778899999 9986 568999999998733221 11111222232 2555545555666899999988654
Q ss_pred ce
Q psy11143 309 AE 310 (940)
Q Consensus 309 ~~ 310 (940)
..
T Consensus 87 ~~ 88 (97)
T cd07704 87 QD 88 (97)
T ss_pred CC
Confidence 33
No 382
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=94.67 E-value=0.14 Score=48.03 Aligned_cols=70 Identities=11% Similarity=0.232 Sum_probs=46.4
Q ss_pred eCCCcEEEecCCeEEEEEEeeccCC---CeEEEEECCE-e------e------c--CCCCeEEE----eeceEEEEcccc
Q psy11143 50 QRPVSTTYSTGSTSRITCLVEGHPL---PQMTWFHDGN-S------L------D--SDDHVTYE----HDGFVLVLNGVR 107 (940)
Q Consensus 50 ~~p~~~~V~eGesv~L~C~v~g~P~---p~V~W~kdg~-~------I------~--~~~~~~~~----~~gs~L~I~~v~ 107 (940)
.++....+..|..++|.|.++|... -.+.|+|... . + . ...++... .+...|.|.+++
T Consensus 3 ~~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~ 82 (115)
T cd05721 3 VQQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLR 82 (115)
T ss_pred eecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCC
Confidence 3455667888999999999977433 3678987421 1 0 0 11122222 223458999999
Q ss_pred cCCCeEEEEEEE
Q psy11143 108 ESDAGVYNCVAQ 119 (940)
Q Consensus 108 ~~DsG~YtC~a~ 119 (940)
.+|.+.|.|..+
T Consensus 83 a~DTa~Y~Ca~e 94 (115)
T cd05721 83 ANQTDIYFCKIE 94 (115)
T ss_pred HHHCeEEEEEee
Confidence 999999999763
No 383
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=94.19 E-value=0.12 Score=49.48 Aligned_cols=77 Identities=19% Similarity=0.307 Sum_probs=46.8
Q ss_pred ecCCCeEEEEEeecCc-----CCCeEEEEeCCeeec--cCCcEEE--------------eeeceEEEecCCCCCCeEEEE
Q psy11143 334 APAGSSVEIPCKPDGE-----PLPRISWSKDEAEFV--EDRNHKI--------------HRTGSLRLYNIGPQDSGLYRC 392 (940)
Q Consensus 334 v~~G~~vtL~C~v~g~-----P~p~i~W~k~g~~i~--~~~~~~i--------------~~~~sL~I~~v~~~D~G~YtC 392 (940)
..-.++|.|.|.+... +...|.|..++..+. .+..... ..+.+|.+.....- .|+|+|
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTC 102 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTC 102 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEE
T ss_pred EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEE
Confidence 3457899999999752 234799999988653 1111111 11235777664443 899999
Q ss_pred EEEeCCeeEEEEEEEEEec
Q psy11143 393 TASNLLGEDVAEGYLTVTG 411 (940)
Q Consensus 393 ~A~N~~G~~~~s~~L~V~~ 411 (940)
+|.......+..+.|+.+.
T Consensus 103 eVt~~~~ege~~i~Lk~~~ 121 (130)
T PF08204_consen 103 EVTELSREGETTIELKYRV 121 (130)
T ss_dssp EEEETTEEEEEEEEEEE--
T ss_pred EEEecCCCceEEEEEEEEE
Confidence 9999999999888888753
No 384
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=93.88 E-value=0.3 Score=44.54 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=40.9
Q ss_pred CcEEEEEEeC-CCCCCeEEEeeCCeecccc-----CceEEeeeceEEEeecccCCCceEEEEEEcCCcceeeee
Q psy11143 154 SSVEIPCKPD-GEPLPRISWSKDEAEFVED-----RNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG 221 (940)
Q Consensus 154 e~vtL~C~v~-g~P~p~ItW~k~g~~i~~~-----~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s~s~ 221 (940)
..+.+.|.+. |+|.+.|+|+++....... ........+.|.+.....+|...|+|.+.+..-......
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~ 89 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLL 89 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEE
Confidence 3478999876 6999999999962211110 111122233466655455555689999999765444333
No 385
>PHA02633 hypothetical protein; Provisional
Probab=93.85 E-value=0.12 Score=42.43 Aligned_cols=39 Identities=21% Similarity=0.251 Sum_probs=32.5
Q ss_pred eceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEEec
Q psy11143 97 DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 135 (940)
Q Consensus 97 ~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V~~ 135 (940)
.+..|.|-++..+|+|.|.|.++|..-..+.+..|+|..
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~ 54 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICL 54 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEee
Confidence 455689999999999999999998877777777777754
No 386
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=93.81 E-value=0.12 Score=43.54 Aligned_cols=49 Identities=18% Similarity=0.361 Sum_probs=36.3
Q ss_pred CCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEe
Q psy11143 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN 304 (940)
Q Consensus 244 G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N 304 (940)
.+.|.|+|.+. .+|.|++ |..+.... ..+|.+.....+-.|.|.|.+++
T Consensus 6 ~~~V~L~C~~~----tsi~W~k-G~~~~~~~-------~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNGA----TNITWKK-GKEILEVS-------NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecCC----CcEEEec-Cccccccc-------ccEEeccCcccCCCcceEecCcc
Confidence 45799999652 4699999 55543221 23488888888999999999877
No 387
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=93.74 E-value=0.14 Score=46.92 Aligned_cols=73 Identities=23% Similarity=0.433 Sum_probs=42.7
Q ss_pred CCCeeEEecCCeEEEEEEEeee--CC-CeEEEEECCeecCCCCc-eEEeecCe-----EEEEeeeccCCCeEEEEEEEeC
Q psy11143 235 RPVSTTYSTGSTSRITCLVEGH--PL-PQMTWFHDGNSLDSDDH-VTYEHDGF-----VLVLNGVRESDAGVYNCVAQNS 305 (940)
Q Consensus 235 ~p~~~~v~~G~~v~L~C~v~G~--P~-p~ItW~k~g~~l~~~~~-~~~~~~g~-----sL~I~~v~~~DsG~YtC~A~N~ 305 (940)
.|....+..+..++|.|.+.++ |. ..|+|.++|.. ..... .....+++ .|.|..-.......|+|.+.+.
T Consensus 10 pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~ 88 (99)
T cd04986 10 RPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHP 88 (99)
T ss_pred CcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECC
Confidence 3443445568889999999994 43 38999999875 11100 11112332 2444432234445799999987
Q ss_pred CCC
Q psy11143 306 EGS 308 (940)
Q Consensus 306 ~Gs 308 (940)
...
T Consensus 89 ~l~ 91 (99)
T cd04986 89 EGD 91 (99)
T ss_pred Ccc
Confidence 653
No 388
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=93.58 E-value=0.2 Score=47.99 Aligned_cols=75 Identities=13% Similarity=0.247 Sum_probs=44.1
Q ss_pred ecCCeEEEEEEeec-----cCCCeEEEEECCEeecC---CCCeEEE------------eeceEEEEcccccCCCeEEEEE
Q psy11143 58 STGSTSRITCLVEG-----HPLPQMTWFHDGNSLDS---DDHVTYE------------HDGFVLVLNGVRESDAGVYNCV 117 (940)
Q Consensus 58 ~eGesv~L~C~v~g-----~P~p~V~W~kdg~~I~~---~~~~~~~------------~~gs~L~I~~v~~~DsG~YtC~ 117 (940)
.=+++|.|.|.+.. -+...|+|.++|+.|-. ....... .....|.+.....- .|.|+|.
T Consensus 25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCe 103 (130)
T PF08204_consen 25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCE 103 (130)
T ss_dssp TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEE
T ss_pred ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEE
Confidence 34789999999964 12347999999987631 1111100 11123566664444 8999999
Q ss_pred EEeCCCceEEEEEEEE
Q psy11143 118 AQNSEGSAESVAMIRI 133 (940)
Q Consensus 118 a~n~~g~~~~~~~L~V 133 (940)
+.....+.+..+.|..
T Consensus 104 Vt~~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 104 VTELSREGETTIELKY 119 (130)
T ss_dssp EEETTEEEEEEEEEEE
T ss_pred EEecCCCceEEEEEEE
Confidence 9988877777766665
No 389
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=93.49 E-value=16 Score=41.18 Aligned_cols=118 Identities=16% Similarity=0.301 Sum_probs=72.2
Q ss_pred eEEecCCeEEEEEEEee---eCCCeEEEEECCeecC-----------------CCCceEEee--------cCeEEEEeee
Q psy11143 239 TTYSTGSTSRITCLVEG---HPLPQMTWFHDGNSLD-----------------SDDHVTYEH--------DGFVLVLNGV 290 (940)
Q Consensus 239 ~~v~~G~~v~L~C~v~G---~P~p~ItW~k~g~~l~-----------------~~~~~~~~~--------~g~sL~I~~v 290 (940)
..+..|..|.|.|...- .....+.|+--|-++. ....+.+.. ..++|+|..+
T Consensus 274 ~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka 353 (500)
T PHA02914 274 VMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKA 353 (500)
T ss_pred eEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeE
Confidence 44556999999998753 3345788986554332 111222221 1346999999
Q ss_pred ccCCCeEEEEEEEeCCCCceeEEEEEEeeccCCeEEEcCCceeecCCC-eEEEEEeecCc--CCCeEEEEeCCeeec
Q psy11143 291 RESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGS-SVEIPCKPDGE--PLPRISWSKDEAEFV 364 (940)
Q Consensus 291 ~~~DsG~YtC~A~N~~Gs~~~s~~l~V~~~~~P~i~~~p~~~~v~~G~-~vtL~C~v~g~--P~p~i~W~k~g~~i~ 364 (940)
.-+.+|-|+|+|....-..+...-+.|...+--.+. .+|. .....|-+-.. -+++|.|.-+|....
T Consensus 354 ~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~V~f~W~--------~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~ 422 (500)
T PHA02914 354 HINNAGCYEAQAFMGKFKEECRHCFKVADHVFFKWN--------TEGDNETKVACYAAQYDMQPFSILWKSNGVSFG 422 (500)
T ss_pred EEEcCCceEEEEecCcchhhhhhheEeccEEEEEEE--------eccCceEEEEEEEEecccCCceeEEEEccEEec
Confidence 999999999999877655555555555432111111 1333 33456765433 334899999887543
No 390
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=93.46 E-value=0.23 Score=45.29 Aligned_cols=64 Identities=19% Similarity=0.333 Sum_probs=42.1
Q ss_pred EecCCeEEEEEEeec-cCC--CeEEEEECCEeecCCCCeE------EEeeceEEEEcccccCCCe-EEEEEEEeC
Q psy11143 57 YSTGSTSRITCLVEG-HPL--PQMTWFHDGNSLDSDDHVT------YEHDGFVLVLNGVRESDAG-VYNCVAQNS 121 (940)
Q Consensus 57 V~eGesv~L~C~v~g-~P~--p~V~W~kdg~~I~~~~~~~------~~~~gs~L~I~~v~~~DsG-~YtC~a~n~ 121 (940)
+.+|..+++.|.+.+ .|. .+|.|++++..+....... ....+..+++.. +.+|.| .|+|.|.-.
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~ 85 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLH 85 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEe
Confidence 479999999999975 555 5899999776665432111 011223445554 466666 899999744
No 391
>KOG4597|consensus
Probab=92.71 E-value=0.15 Score=57.68 Aligned_cols=89 Identities=17% Similarity=0.138 Sum_probs=67.9
Q ss_pred CeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEe---CCeee--cc---CCcEEEeeeceEEEecCCCCCCeEEEEEE
Q psy11143 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSK---DEAEF--VE---DRNHKIHRTGSLRLYNIGPQDSGLYRCTA 394 (940)
Q Consensus 323 P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k---~g~~i--~~---~~~~~i~~~~sL~I~~v~~~D~G~YtC~A 394 (940)
|.+...|....+..++++.++|-+.|.|.+.|+|.+ ++..+ .. -++..+.+...|.|.+....|+|.|+|.|
T Consensus 197 c~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~ 276 (560)
T KOG4597|consen 197 CALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSA 276 (560)
T ss_pred cccccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeecc
Confidence 334444555567889999999999999999999976 23222 11 12334456678999999999999999999
Q ss_pred EeCCeeEEEEEEEEEec
Q psy11143 395 SNLLGEDVAEGYLTVTG 411 (940)
Q Consensus 395 ~N~~G~~~~s~~L~V~~ 411 (940)
.|..|...+++.+.+..
T Consensus 277 rcg~g~~~rdv~c~s~~ 293 (560)
T KOG4597|consen 277 RCGAGFLRRDVPCSSVK 293 (560)
T ss_pred ccccceeeccceeeeec
Confidence 99999999988876543
No 392
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=92.50 E-value=0.71 Score=43.39 Aligned_cols=66 Identities=15% Similarity=0.221 Sum_probs=44.2
Q ss_pred CCceeecCCCeEEEEEeecCcCCC---eEEEEeCCe-e--e------------ccCCcEEEeee-----ceEEEecCCCC
Q psy11143 329 PFDMRAPAGSSVEIPCKPDGEPLP---RISWSKDEA-E--F------------VEDRNHKIHRT-----GSLRLYNIGPQ 385 (940)
Q Consensus 329 p~~~~v~~G~~vtL~C~v~g~P~p---~i~W~k~g~-~--i------------~~~~~~~i~~~-----~sL~I~~v~~~ 385 (940)
+....+..|..++|+|.+.|.-.. .+.|.|... . + ....++.++.+ -+|.|.+++.+
T Consensus 5 ~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~ 84 (115)
T cd05721 5 QSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRAN 84 (115)
T ss_pred cCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHH
Confidence 444567788899999999775444 678887321 1 0 01123333321 26999999999
Q ss_pred CCeEEEEEE
Q psy11143 386 DSGLYRCTA 394 (940)
Q Consensus 386 D~G~YtC~A 394 (940)
|.+.|.|..
T Consensus 85 DTa~Y~Ca~ 93 (115)
T cd05721 85 QTDIYFCKI 93 (115)
T ss_pred HCeEEEEEe
Confidence 999999976
No 393
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=91.82 E-value=39 Score=41.43 Aligned_cols=278 Identities=15% Similarity=0.168 Sum_probs=153.7
Q ss_pred EecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCce------EEEEE
Q psy11143 57 YSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA------ESVAM 130 (940)
Q Consensus 57 V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~------~~~~~ 130 (940)
...|+.+.|...+.|.....+...-.|..+... .+...... +-+++.+|.|.-.+.-..... .....
T Consensus 302 ql~g~~I~ika~a~GG~~llYrf~I~G~~~e~~---~Y~~~n~~----~w~P~~~G~Y~I~v~VKDk~S~~eyD~~~~v~ 374 (667)
T PRK14081 302 QLTDTDIELKAVAEGGKELLYRFIIKGKESEDS---GYIRNNIY----TWKPKIAGKYSITLWVKDISSKGEYEDKSSID 374 (667)
T ss_pred eecCceEEEEEEecCCCceEEEEEECCcEEeec---cccccceE----EEeeCCCceEEEEEEEEcCcCcccccceEEEE
Confidence 368999999999998666566544456554311 11122222 234567999988775432221 12344
Q ss_pred EEEecccC-Ce-e--EecCCceeecCCCcEEEEEEeCCCCCCeEE-E-eeCCeeccccCceEEeeeceEEEeecccCCCc
Q psy11143 131 IRINGHRA-PR-L--VVKPFDMRAPAGSSVEIPCKPDGEPLPRIS-W-SKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSG 204 (940)
Q Consensus 131 L~V~~~~~-P~-~--~~~p~~~~v~~Ge~vtL~C~v~g~P~p~It-W-~k~g~~i~~~~~~~~~~~~sL~I~~v~~~DsG 204 (940)
+.+...+. |. + ++.+.......|+++.+.|.+.+.....+. | .++|..+... ....+..+.+ .+.-+|
T Consensus 375 f~i~~~~~~p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg~~~lY~f~ik~ng~~ve~~---~Y~~~~~~~f---~P~~~G 448 (667)
T PRK14081 375 YTIEEKSKEPIKIEDVILDKGKHILKGEEIKIRVIAEGGTNLRYSFIIKKDGKEEEKI---DYGKNNWVNF---IPEEKG 448 (667)
T ss_pred EEEcccCCCCeEEEEEEECCCCceEeCCeEEEEEEecCCCeEEEEEEEEECCEEEEEe---ecccccEEEE---EECCCe
Confidence 45444311 22 1 133334567789999999999875544443 3 2366655432 1112223333 457789
Q ss_pred eEEEEEE--cCCcc----eeeeeeeeecCCCCe-ee--eCCCeeEEecCCeEEEEEEEeeeCCCeEE--EEECCeecCCC
Q psy11143 205 LYRCTAS--NLLGE----DVAEGYLTVTGAPPI-FI--QRPVSTTYSTGSTSRITCLVEGHPLPQMT--WFHDGNSLDSD 273 (940)
Q Consensus 205 ~YtC~a~--N~~g~----~s~s~~L~V~~~~p~-~~--~~p~~~~v~~G~~v~L~C~v~G~P~p~It--W~k~g~~l~~~ 273 (940)
.|+-.+. +.... ....+.+.|....|. +. +.+.......|+.+++.|.+++.-...+. -+.+|..+...
T Consensus 449 ~Y~IeV~vKdk~S~~~yD~~k~v~l~V~e~~P~~i~~il~~~~~~~~vg~~i~~~~~~~~~k~v~y~y~~~~NG~~v~~t 528 (667)
T PRK14081 449 NYELEVRVKDKYSDKEYDAHTIVYIKVHEYIPAEIDYILLPVKEYYLVGDDIEIEVIIQNTKDVLIKYILKINGHKVEET 528 (667)
T ss_pred eEEEEEEEecccCchhcccceEEEEEEeccCceeeeeEEecccccEEeCCEEEEEEEEeCCCeEEEEEEEEECCEEEEEe
Confidence 9988764 33222 345667778765554 22 33555667889999999999885444333 23455544211
Q ss_pred CceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCc------eeEEEEEEeeccCCeEE--EcCCceeecCCCeEEEEEe
Q psy11143 274 DHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA------ESVAMIRINGHRAPRLV--VKPFDMRAPAGSSVEIPCK 345 (940)
Q Consensus 274 ~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~------~~s~~l~V~~~~~P~i~--~~p~~~~v~~G~~vtL~C~ 345 (940)
. .+.+. .+++. +.-+|.|+..+.-..... ...+.+.|.... |... +.........++.+++...
T Consensus 529 ~---Ys~~~-~ysf~---P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~e~~-pi~nt~~~~~~~~~~~n~~~t~~~~ 600 (667)
T PRK14081 529 D---YIKNK-KYKFI---PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVREAL-PITNTKIKTSKKKFKCNEEVTFSVK 600 (667)
T ss_pred e---ccccc-eEEEe---ecCCceEEEEEEEcccccccccccceEEEEEEcCCC-CceeeEEEeecceEEcCCeEEEEEE
Confidence 0 11111 14333 566899998765443322 234455555322 3222 2234456777888888888
Q ss_pred ecCcCCCeEE
Q psy11143 346 PDGEPLPRIS 355 (940)
Q Consensus 346 v~g~P~p~i~ 355 (940)
+.|.-..-+.
T Consensus 601 ~~gg~~v~Ye 610 (667)
T PRK14081 601 SEGGKDVCYE 610 (667)
T ss_pred ccCCCcEEEE
Confidence 7765544443
No 394
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=91.73 E-value=0.2 Score=53.07 Aligned_cols=47 Identities=28% Similarity=0.394 Sum_probs=40.1
Q ss_pred CCCeEEEEeCC-eeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEe
Q psy11143 350 PLPRISWSKDE-AEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 396 (940)
Q Consensus 350 P~p~i~W~k~g-~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N 396 (940)
..|.+.|...+ ..+.......+..+|.|.+.+...+++|.|+|+.+-
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsY 58 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSY 58 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEE
Confidence 45899999754 556666788899999999999999999999999865
No 395
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=91.68 E-value=0.51 Score=43.07 Aligned_cols=64 Identities=17% Similarity=0.224 Sum_probs=40.8
Q ss_pred eecCCCcEEEEEEeCC-CCC--CeEEEeeCCeeccccCceE-------EeeeceEEEeecccCCCc-eEEEEEEcC
Q psy11143 149 RAPAGSSVEIPCKPDG-EPL--PRISWSKDEAEFVEDRNHK-------IHRTGSLRLYNIGPQDSG-LYRCTASNL 213 (940)
Q Consensus 149 ~v~~Ge~vtL~C~v~g-~P~--p~ItW~k~g~~i~~~~~~~-------~~~~~sL~I~~v~~~DsG-~YtC~a~N~ 213 (940)
.+.+|+.+++.|.+.+ .|. ..|.|+++...+....-.. ......+.+.. +.+|.| .|+|.|.-.
T Consensus 11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~ 85 (99)
T cd07689 11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLH 85 (99)
T ss_pred cccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEe
Confidence 3579999999999985 555 4799998665544321110 01112355544 467777 999999753
No 396
>PHA02982 hypothetical protein; Provisional
Probab=91.11 E-value=1 Score=46.10 Aligned_cols=117 Identities=13% Similarity=0.273 Sum_probs=69.9
Q ss_pred CcEEEecCCeEEEEEEeec-cCCCeEEEEECCE-eecC------------------CCCeE--EEeeceEEEEcccccCC
Q psy11143 53 VSTTYSTGSTSRITCLVEG-HPLPQMTWFHDGN-SLDS------------------DDHVT--YEHDGFVLVLNGVRESD 110 (940)
Q Consensus 53 ~~~~V~eGesv~L~C~v~g-~P~p~V~W~kdg~-~I~~------------------~~~~~--~~~~gs~L~I~~v~~~D 110 (940)
.++....+++|.|.|.... ....+..|+++.. .+.. ....+ ++.+.++|+|+++..+.
T Consensus 32 ~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N 111 (251)
T PHA02982 32 ADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQN 111 (251)
T ss_pred hhhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCccc
Confidence 3456678999999999632 3344788987542 2220 01122 22445679999999999
Q ss_pred CeEEEEEEEeCCCceEE-EEEEEEecccCCeeEecCCceeecCCC-cEEEEEEeCCCCCCeEEEeeCCe
Q psy11143 111 AGVYNCVAQNSEGSAES-VAMIRINGHRAPRLVVKPFDMRAPAGS-SVEIPCKPDGEPLPRISWSKDEA 177 (940)
Q Consensus 111 sG~YtC~a~n~~g~~~~-~~~L~V~~~~~P~~~~~p~~~~v~~Ge-~vtL~C~v~g~P~p~ItW~k~g~ 177 (940)
.|-|+|++....+..+. ..-+.|+.. .+. ..+.++. ...+.|-+.+...+-..|.-+|.
T Consensus 112 ~GCYtc~~ks~~~k~E~c~kCl~V~~~---~V~-----~~W~e~nNeT~V~CyVgS~~~dvp~W~V~GV 172 (251)
T PHA02982 112 LGCFTCEAKDAEGKEETCEKCLEIQKE---DIL-----YVVEEHNNETIITCFVGSKHGDVPRFIVAGI 172 (251)
T ss_pred CCceEEEEecCCCchheeheeeeEecc---eEE-----EEEEecCCeEEEEEEEEeccCCCccEEEeeE
Confidence 99999999986655544 333444211 011 1122333 35578988764443337877665
No 397
>PHA02982 hypothetical protein; Provisional
Probab=90.57 E-value=2.1 Score=43.96 Aligned_cols=117 Identities=17% Similarity=0.347 Sum_probs=70.9
Q ss_pred CceeecCCCcEEEEEEeCC-CCCCeEEEeeCCee-ccc------------------cCceEE---eeeceEEEeecccCC
Q psy11143 146 FDMRAPAGSSVEIPCKPDG-EPLPRISWSKDEAE-FVE------------------DRNHKI---HRTGSLRLYNIGPQD 202 (940)
Q Consensus 146 ~~~~v~~Ge~vtL~C~v~g-~P~p~ItW~k~g~~-i~~------------------~~~~~~---~~~~sL~I~~v~~~D 202 (940)
.++....+++|.|.|.... ....+..|..+... +.. ...+.+ ...++|+|.++..+.
T Consensus 32 ~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N 111 (251)
T PHA02982 32 ADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQN 111 (251)
T ss_pred hhhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCccc
Confidence 3556678999999998543 33447889874321 110 011111 124579999999999
Q ss_pred CceEEEEEEcCCccee-eeeeeeecCCCCeeeeCCCeeEEecCC-eEEEEEEEeeeCCCeEEEEECCee
Q psy11143 203 SGLYRCTASNLLGEDV-AEGYLTVTGAPPIFIQRPVSTTYSTGS-TSRITCLVEGHPLPQMTWFHDGNS 269 (940)
Q Consensus 203 sG~YtC~a~N~~g~~s-~s~~L~V~~~~p~~~~~p~~~~v~~G~-~v~L~C~v~G~P~p~ItW~k~g~~ 269 (940)
.|-|+|++....+..+ ...-+.|+.....+ .+.++. ...+.|-+-+...+-..|..+|..
T Consensus 112 ~GCYtc~~ks~~~k~E~c~kCl~V~~~~V~~-------~W~e~nNeT~V~CyVgS~~~dvp~W~V~GVv 173 (251)
T PHA02982 112 LGCFTCEAKDAEGKEETCEKCLEIQKEDILY-------VVEEHNNETIITCFVGSKHGDVPRFIVAGIV 173 (251)
T ss_pred CCceEEEEecCCCchheeheeeeEecceEEE-------EEEecCCeEEEEEEEEeccCCCccEEEeeEE
Confidence 9999999998665433 35555553111111 122233 456889886654443489887753
No 398
>PHA03283 envelope glycoprotein E; Provisional
Probab=90.25 E-value=8.8 Score=44.80 Aligned_cols=76 Identities=21% Similarity=0.324 Sum_probs=53.4
Q ss_pred cccEEEECCCCCCCCeEEEEEEEcCCceEEEEEEEEEeCCC---------eEEeC------------CCcEEEecCCeEE
Q psy11143 6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP---------IFIQR------------PVSTTYSTGSTSR 64 (940)
Q Consensus 6 s~~tL~I~~v~~sDsG~Y~C~a~n~~g~~~~~v~l~V~~pP---------~~~~~------------p~~~~V~eGesv~ 64 (940)
..+.|+|.+++.+++|.|+-...+..+.....+.|+|+.++ ...+. -......+|+++.
T Consensus 132 ~~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~ 211 (542)
T PHA03283 132 ERSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFD 211 (542)
T ss_pred CCCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCcee
Confidence 45789999999999999999999888866666778886521 11111 1234567899999
Q ss_pred EEEEeeccC-----CCeEEEEE
Q psy11143 65 ITCLVEGHP-----LPQMTWFH 81 (940)
Q Consensus 65 L~C~v~g~P-----~p~V~W~k 81 (940)
+.-...... ..+|.||+
T Consensus 212 lsi~l~s~~~d~~fs~~i~Wyy 233 (542)
T PHA03283 212 LSVHLESDIGDPSFSATIDWYY 233 (542)
T ss_pred EeEEEeeccCCCCceEEEEEEE
Confidence 877664322 23889985
No 399
>KOG1026|consensus
Probab=90.07 E-value=0.38 Score=58.76 Aligned_cols=163 Identities=15% Similarity=0.180 Sum_probs=98.3
Q ss_pred eeEEecCCeEEEEEEEeeeCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEEEeCCCCceeEEEEEE
Q psy11143 238 STTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317 (940)
Q Consensus 238 ~~~v~~G~~v~L~C~v~G~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~l~V 317 (940)
...+..|..+++.|.+.+.|.|.+.|+.++............-......+.+ ++|.++|..|....++.+.+
T Consensus 201 ~~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~--------~~c~~E~~~~~~~~~v~~~~ 272 (774)
T KOG1026|consen 201 NLTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCRSECEVLEN--------DLCIAENAVARSNPSILLVV 272 (774)
T ss_pred hhhhcccchheeeeecccCCCcceeeecccccccCCCcccccccccceeeec--------hhhHHHHhhhhcCceeeeEE
Confidence 4567789999999999999999999998876654432211110111111111 89999999998887777666
Q ss_pred eeccCCeEEEcCCceeecCCCeEEEEEeecCcCCCeEEEEeCCeeeccCCcEE--Eeee-ceEEEecCCCCCCeEEEEEE
Q psy11143 318 NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHK--IHRT-GSLRLYNIGPQDSGLYRCTA 394 (940)
Q Consensus 318 ~~~~~P~i~~~p~~~~v~~G~~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~--i~~~-~sL~I~~v~~~D~G~YtC~A 394 (940)
.. ++......... .. ....+.-.+.+.|.+...|..++..+...+... .+.. .-+........+.|.|+|.+
T Consensus 273 ~~--p~~~~~~~~~~--~~-~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~~C~~~~~~~h~~~~~~~~~~ 347 (774)
T KOG1026|consen 273 DL--PKAEVLLCSPL--SD-HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKEQCLPWNDPPHSHNGNYTLFP 347 (774)
T ss_pred ec--ccccccCCCCc--cc-cCceeeeeccCCCCCceeeeecCccceEecccccccccCcCCcccCcCcccccCcceeee
Confidence 53 32222111110 00 111111223367778899988876543322211 1121 23333444667899999999
Q ss_pred EeCCeeEEEEEEEEEecCC
Q psy11143 395 SNLLGEDVAEGYLTVTGEN 413 (940)
Q Consensus 395 ~N~~G~~~~s~~L~V~~~~ 413 (940)
.|..|.........+...|
T Consensus 348 e~~~g~~~~r~~g~~~~~P 366 (774)
T KOG1026|consen 348 ELPGGKNYCRNPGGFMSRP 366 (774)
T ss_pred cccCccccccCcCccccCC
Confidence 9999988887766666544
No 400
>KOG4597|consensus
Probab=89.58 E-value=0.48 Score=53.90 Aligned_cols=86 Identities=17% Similarity=0.166 Sum_probs=65.7
Q ss_pred EecCCceeecCCCcEEEEEEeCCCCCCeEEEee---CCeecccc-----CceEEeeeceEEEeecccCCCceEEEEEEcC
Q psy11143 142 VVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSK---DEAEFVED-----RNHKIHRTGSLRLYNIGPQDSGLYRCTASNL 213 (940)
Q Consensus 142 ~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k---~g~~i~~~-----~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~ 213 (940)
..-|....+..|++..++|-+.|.+.+.|+|.+ ++..+.-. .+..+.....|.|-+....|+|.|+|.+.+.
T Consensus 200 ~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg 279 (560)
T KOG4597|consen 200 VDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCG 279 (560)
T ss_pred ccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccc
Confidence 334455678889999999999999999999976 33322111 2223445567999999999999999999999
Q ss_pred CcceeeeeeeeecC
Q psy11143 214 LGEDVAEGYLTVTG 227 (940)
Q Consensus 214 ~g~~s~s~~L~V~~ 227 (940)
.|-....+.+.+..
T Consensus 280 ~g~~~rdv~c~s~~ 293 (560)
T KOG4597|consen 280 AGFLRRDVPCSSVK 293 (560)
T ss_pred cceeeccceeeeec
Confidence 99888887777663
No 401
>PHA03042 CD47-like protein; Provisional
Probab=89.16 E-value=1.4 Score=47.11 Aligned_cols=70 Identities=16% Similarity=0.224 Sum_probs=45.9
Q ss_pred cCCeEEEEEEeecc-----CCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEE
Q psy11143 59 TGSTSRITCLVEGH-----PLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133 (940)
Q Consensus 59 eGesv~L~C~v~g~-----P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V 133 (940)
=++++.+.|.++.- ....+.|..+++.+-..... +.+.|.+.. ...=.|+|+|+|.+...+.+...+++.
T Consensus 30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t----n~aSL~~~f-~~~l~GNYTCEv~~l~n~gk~~IeLk~ 104 (286)
T PHA03042 30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT----NTSSLKFNF-SKNLSGNYTCEAINKFNKIKNTIELQY 104 (286)
T ss_pred cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC----cceEEEEec-cccCCCceeEEEeecccCccEEEEEEE
Confidence 37899999998642 24479999999887432222 224445543 333489999999987666555555544
No 402
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=89.16 E-value=0.52 Score=50.09 Aligned_cols=48 Identities=27% Similarity=0.380 Sum_probs=41.0
Q ss_pred CCCeEEEee-CCeeccccCceEEeeeceEEEeecccCCCceEEEEEEcC
Q psy11143 166 PLPRISWSK-DEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNL 213 (940)
Q Consensus 166 P~p~ItW~k-~g~~i~~~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~ 213 (940)
..|.+.|.. +|..+.+.....+..+|.|.+.+....++|.|+|..+..
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk 59 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYK 59 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEE
Confidence 467899998 566667777888999999999999999999999998753
No 403
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=88.67 E-value=11 Score=39.22 Aligned_cols=128 Identities=22% Similarity=0.355 Sum_probs=65.4
Q ss_pred eEEEEECCeecCCCC---ceEEeecCe-----EEEEe-eeccCCCeEEEEEEEeCCCCcee---EEEEEEeeccCCeEEE
Q psy11143 260 QMTWFHDGNSLDSDD---HVTYEHDGF-----VLVLN-GVRESDAGVYNCVAQNSEGSAES---VAMIRINGHRAPRLVV 327 (940)
Q Consensus 260 ~ItW~k~g~~l~~~~---~~~~~~~g~-----sL~I~-~v~~~DsG~YtC~A~N~~Gs~~~---s~~l~V~~~~~P~i~~ 327 (940)
.++|+.||.++.... ......+|. +|++. +......-..+|.+.-....... ++.+.-.+..+|.+.+
T Consensus 8 ~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~vsv 87 (211)
T PF02124_consen 8 RFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRVSV 87 (211)
T ss_pred EEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEEEE
Confidence 688999999887432 122223341 24442 22233344789998755443322 2233333345555554
Q ss_pred cCCceeecCCCeEEEEEeecCcCCC--eEEEEeCCeeeccCCcEEEee-----eceEEEecCCC--CCCe--EEEEEEE
Q psy11143 328 KPFDMRAPAGSSVEIPCKPDGEPLP--RISWSKDEAEFVEDRNHKIHR-----TGSLRLYNIGP--QDSG--LYRCTAS 395 (940)
Q Consensus 328 ~p~~~~v~~G~~vtL~C~v~g~P~p--~i~W~k~g~~i~~~~~~~i~~-----~~sL~I~~v~~--~D~G--~YtC~A~ 395 (940)
....| ...|.+...|.. .+.|.-++............. .+...|.+... ...| +|+|...
T Consensus 88 -----~F~~g---~AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~pls~~~~~~~YtC~l~ 158 (211)
T PF02124_consen 88 -----RFEDG---YAVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLVNIRSRRPLSDEDGPVEYTCRLI 158 (211)
T ss_pred -----EecCC---EEEEEcceeeCCCeEEEEEECCccCCCCCceeecCcccCCcceeEeecccCCCccCCceeEEEEEe
Confidence 23333 356777777744 899997775432222222222 12233333322 2334 7999875
No 404
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=88.01 E-value=1.6 Score=39.28 Aligned_cols=68 Identities=18% Similarity=0.339 Sum_probs=46.1
Q ss_pred CCCcEEEecCCeEEEEEEeec-----cCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEE
Q psy11143 51 RPVSTTYSTGSTSRITCLVEG-----HPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVA 118 (940)
Q Consensus 51 ~p~~~~V~eGesv~L~C~v~g-----~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a 118 (940)
.|+...+..|++++..|.... .....|.|..++..++.+....+....+.+++.+.....+-.|-|..
T Consensus 9 ~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 9 SPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp ECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEE
T ss_pred ecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCCeEEEEEEccCCCCCceEEEEEE
Confidence 455667899999999999852 24558999999998876655444444456788877776666777764
No 405
>PHA03042 CD47-like protein; Provisional
Probab=87.71 E-value=2.1 Score=45.84 Aligned_cols=71 Identities=21% Similarity=0.285 Sum_probs=48.7
Q ss_pred CCCeEEEEEeecCc-----CCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy11143 336 AGSSVEIPCKPDGE-----PLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410 (940)
Q Consensus 336 ~G~~vtL~C~v~g~-----P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~ 410 (940)
=.+++.+.|.++.- ..-.+.|+.++..+...... +..+|.+. -...-.|+|+|+|.+...+.....+|+-+
T Consensus 30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t---n~aSL~~~-f~~~l~GNYTCEv~~l~n~gk~~IeLk~~ 105 (286)
T PHA03042 30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT---NTSSLKFN-FSKNLSGNYTCEAINKFNKIKNTIELQYV 105 (286)
T ss_pred cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC---cceEEEEe-ccccCCCceeEEEeecccCccEEEEEEEE
Confidence 35789999998742 24479999999877533222 22356553 44456899999999877766666666654
No 406
>PHA03282 envelope glycoprotein E; Provisional
Probab=86.16 E-value=14 Score=42.43 Aligned_cols=37 Identities=16% Similarity=0.273 Sum_probs=26.6
Q ss_pred ccEEEECCCCCCCCeEEEEEEEcCCc--eEEEEEEEEEe
Q psy11143 7 STELVISGVQREHGGRYSCVAGNPAG--VYRGDLHVTVN 43 (940)
Q Consensus 7 ~~tL~I~~v~~sDsG~Y~C~a~n~~g--~~~~~v~l~V~ 43 (940)
+.+|.|.+++.+|+|.|.-.+..... .....+.+.|.
T Consensus 123 n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~ 161 (540)
T PHA03282 123 NGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVG 161 (540)
T ss_pred cceEEEeeccccCCceEEEEecCCCCchhheEEEEEEec
Confidence 56799999999999999998753222 23444566664
No 407
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=84.65 E-value=5.5 Score=36.80 Aligned_cols=43 Identities=14% Similarity=0.383 Sum_probs=31.0
Q ss_pred CeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEE-EEEEEE
Q psy11143 91 HVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES-VAMIRI 133 (940)
Q Consensus 91 ~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~-~~~L~V 133 (940)
++.+......|.|+.+++.|+|.|.-++++..|.... ...|.|
T Consensus 63 r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 63 RFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp HEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred eEeeeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 4555555566899999999999999999999998755 344433
No 408
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=84.59 E-value=1.1e+02 Score=37.66 Aligned_cols=329 Identities=14% Similarity=0.161 Sum_probs=167.6
Q ss_pred EecCCeEEEEEEeecc--CCCeEEEEE---CCEeecCCCCeEEEeeceEEEEcccccCCCeEE--EEEEEeCCCceEE--
Q psy11143 57 YSTGSTSRITCLVEGH--PLPQMTWFH---DGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVY--NCVAQNSEGSAES-- 127 (940)
Q Consensus 57 V~eGesv~L~C~v~g~--P~p~V~W~k---dg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~Y--tC~a~n~~g~~~~-- 127 (940)
+..|+.+.|.-.+... -..-+...+ +|...... +.. .. .+-+-.+..+|.| .|.|.......+-
T Consensus 203 ~i~~~eI~f~~~a~~~~g~~~LYKF~~i~~~G~~~~~q-dYs--t~----n~~~y~~~~~G~Y~i~~~VKD~~S~~eyDD 275 (667)
T PRK14081 203 LICDEELVFEVESVYEEDRTILYKFVKIDSDGKQTCIQ-DYS--TK----NIVSYKEKKSGDYKLLCLVKDMYSNNEFDD 275 (667)
T ss_pred eecCcEEEEEEEEEeCCCceEEEEEEEECCCCCEEEec-Ccc--cc----ceEEEEeCCCccEEEEEEEeccCccccccc
Confidence 4458898888655432 222344333 44322211 110 11 2223457789999 6677655433222
Q ss_pred --EEEEEEecccCCeeE--ecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCCeeccccCceEEeeeceEEEeecccCCC
Q psy11143 128 --VAMIRINGHRAPRLV--VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDS 203 (940)
Q Consensus 128 --~~~L~V~~~~~P~~~--~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g~~i~~~~~~~~~~~~sL~I~~v~~~Ds 203 (940)
.....|....++.+. ....+.....|+.+.|...+.|.-...+...-.|..+... . ......+. -.+..+
T Consensus 276 ~~~l~y~Vk~~~~vkI~~~~~d~~s~ql~g~~I~ika~a~GG~~llYrf~I~G~~~e~~-~--Y~~~n~~~---w~P~~~ 349 (667)
T PRK14081 276 RAVLVYTVKPYKDIKIRNFTTDLSSPQLTDTDIELKAVAEGGKELLYRFIIKGKESEDS-G--YIRNNIYT---WKPKIA 349 (667)
T ss_pred ceEEEEEEecCCCcEEEEEEEcCCCCeecCceEEEEEEecCCCceEEEEEECCcEEeec-c--ccccceEE---EeeCCC
Confidence 333344322222221 1112233468999999999998655555544455443221 1 11222232 345678
Q ss_pred ceEEEEEEc--CCc--c--eeeeeeeeecCC--CCe-ee--eCCCeeEEecCCeEEEEEEEeeeCCCeEE-EE-ECCeec
Q psy11143 204 GLYRCTASN--LLG--E--DVAEGYLTVTGA--PPI-FI--QRPVSTTYSTGSTSRITCLVEGHPLPQMT-WF-HDGNSL 270 (940)
Q Consensus 204 G~YtC~a~N--~~g--~--~s~s~~L~V~~~--~p~-~~--~~p~~~~v~~G~~v~L~C~v~G~P~p~It-W~-k~g~~l 270 (940)
|.|.-.+.- ... . ....+.+.+... .|. +. ..+....+..|+.+.+.|.+.|.-...+. |. ++|..+
T Consensus 350 G~Y~I~v~VKDk~S~~eyD~~~~v~f~i~~~~~~p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg~~~lY~f~ik~ng~~v 429 (667)
T PRK14081 350 GKYSITLWVKDISSKGEYEDKSSIDYTIEEKSKEPIKIEDVILDKGKHILKGEEIKIRVIAEGGTNLRYSFIIKKDGKEE 429 (667)
T ss_pred ceEEEEEEEEcCcCcccccceEEEEEEEcccCCCCeEEEEEEECCCCceEeCCeEEEEEEecCCCeEEEEEEEEECCEEE
Confidence 999887642 111 1 234445555532 232 21 23444567789999999999876544443 33 466655
Q ss_pred CCCCceEEeecCeEEEEeeeccCCCeEEEEEEE--eCCCCc----eeEEEEEEeeccCCe-EE--EcCCceeecCCCeEE
Q psy11143 271 DSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ--NSEGSA----ESVAMIRINGHRAPR-LV--VKPFDMRAPAGSSVE 341 (940)
Q Consensus 271 ~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A~--N~~Gs~----~~s~~l~V~~~~~P~-i~--~~p~~~~v~~G~~vt 341 (940)
... ....+. .+.+ .+.-+|.|+-.+. +..... ...+.+.|.. ..|. +. +.+.......|+.++
T Consensus 430 e~~---~Y~~~~-~~~f---~P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~e-~~P~~i~~il~~~~~~~~vg~~i~ 501 (667)
T PRK14081 430 EKI---DYGKNN-WVNF---IPEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVHE-YIPAEIDYILLPVKEYYLVGDDIE 501 (667)
T ss_pred EEe---eccccc-EEEE---EECCCeeEEEEEEEecccCchhcccceEEEEEEec-cCceeeeeEEecccccEEeCCEEE
Confidence 421 111111 2333 3477899997765 333322 2344455543 3453 32 335455678999999
Q ss_pred EEEeecCcCCCeE--EEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEE--EeCCee----EEEEEEEEEecC
Q psy11143 342 IPCKPDGEPLPRI--SWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTA--SNLLGE----DVAEGYLTVTGE 412 (940)
Q Consensus 342 L~C~v~g~P~p~i--~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A--~N~~G~----~~~s~~L~V~~~ 412 (940)
++|.+++.-...+ .-..+|..+.. ..+ +....+.+. +.-+|.|+..| .|.... ....+.+.|.++
T Consensus 502 ~~~~~~~~k~v~y~y~~~~NG~~v~~-t~Y--s~~~~ysf~---P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~e~ 574 (667)
T PRK14081 502 IEVIIQNTKDVLIKYILKINGHKVEE-TDY--IKNKKYKFI---PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVREA 574 (667)
T ss_pred EEEEEeCCCeEEEEEEEEECCEEEEE-eec--cccceEEEe---ecCCceEEEEEEEcccccccccccceEEEEEEcCC
Confidence 9999987544333 33345544311 111 122234333 45689998755 444432 233455667654
No 409
>KOG1026|consensus
Probab=84.07 E-value=1.7 Score=53.26 Aligned_cols=157 Identities=16% Similarity=0.255 Sum_probs=90.3
Q ss_pred cEEEecCCeEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEE
Q psy11143 54 STTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133 (940)
Q Consensus 54 ~~~V~eGesv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V 133 (940)
...+..|..+++.|.+.+.|.+.+.|+.++.........+..-......+.+ ++|.++|..+.....+.+.+
T Consensus 201 ~~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~--------~~c~~E~~~~~~~~~v~~~~ 272 (774)
T KOG1026|consen 201 NLTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCRSECEVLEN--------DLCIAENAVARSNPSILLVV 272 (774)
T ss_pred hhhhcccchheeeeecccCCCcceeeecccccccCCCcccccccccceeeec--------hhhHHHHhhhhcCceeeeEE
Confidence 3557789999999999999999999998776554322211111111112221 89999999888877766666
Q ss_pred ecccCCeeEecCCceeecCCCcEEEEEE---eCCCCCCeEEEeeCCeeccccCceEEeee---ceEEEeecccCCCceEE
Q psy11143 134 NGHRAPRLVVKPFDMRAPAGSSVEIPCK---PDGEPLPRISWSKDEAEFVEDRNHKIHRT---GSLRLYNIGPQDSGLYR 207 (940)
Q Consensus 134 ~~~~~P~~~~~p~~~~v~~Ge~vtL~C~---v~g~P~p~ItW~k~g~~i~~~~~~~~~~~---~sL~I~~v~~~DsG~Yt 207 (940)
.....-.....+.+. .-.|. +.++|.+...|..++..+........... .-+.....+-.+.|.|+
T Consensus 273 ~~p~~~~~~~~~~~~--------~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~~C~~~~~~~h~~~~~~~ 344 (774)
T KOG1026|consen 273 DLPKAEVLLCSPLSD--------HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKEQCLPWNDPPHSHNGNYT 344 (774)
T ss_pred ecccccccCCCCccc--------cCceeeeeccCCCCCceeeeecCccceEecccccccccCcCCcccCcCcccccCcce
Confidence 542211111111111 22233 23577778888887665432221111111 11222233556789999
Q ss_pred EEEEcCCcceeeeeeeeec
Q psy11143 208 CTASNLLGEDVAEGYLTVT 226 (940)
Q Consensus 208 C~a~N~~g~~s~s~~L~V~ 226 (940)
|.+.+..|.........+.
T Consensus 345 ~~~e~~~g~~~~r~~g~~~ 363 (774)
T KOG1026|consen 345 LFPELPGGKNYCRNPGGFM 363 (774)
T ss_pred eeecccCccccccCcCccc
Confidence 9999988876655444444
No 410
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=82.39 E-value=30 Score=36.13 Aligned_cols=129 Identities=19% Similarity=0.312 Sum_probs=64.2
Q ss_pred eEEEEECCEeecCCCC---eEEEeeceEEEEccccc------CCCeEEEEEEEeCCCceEE---EEEEEEecccCCeeEe
Q psy11143 76 QMTWFHDGNSLDSDDH---VTYEHDGFVLVLNGVRE------SDAGVYNCVAQNSEGSAES---VAMIRINGHRAPRLVV 143 (940)
Q Consensus 76 ~V~W~kdg~~I~~~~~---~~~~~~gs~L~I~~v~~------~DsG~YtC~a~n~~g~~~~---~~~L~V~~~~~P~~~~ 143 (940)
.++|+.||..+..... .....+|..-.+.-++. .-.=..+|.+.=....... ++.++-.+.+.|.+.+
T Consensus 8 ~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~vsv 87 (211)
T PF02124_consen 8 RFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRVSV 87 (211)
T ss_pred EEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEEEE
Confidence 7889999998874321 11113342212222222 2233689998644332222 3333333344555554
Q ss_pred cCCceeecCCCcEEEEEEeCCCCC--CeEEEeeCCeeccccCceEEe-----eeceEEEeeccc--CCCc--eEEEEEEc
Q psy11143 144 KPFDMRAPAGSSVEIPCKPDGEPL--PRISWSKDEAEFVEDRNHKIH-----RTGSLRLYNIGP--QDSG--LYRCTASN 212 (940)
Q Consensus 144 ~p~~~~v~~Ge~vtL~C~v~g~P~--p~ItW~k~g~~i~~~~~~~~~-----~~~sL~I~~v~~--~DsG--~YtC~a~N 212 (940)
.. ..| ...|.+.--|. ..+.|.-++............ ..+...|.+..+ ...| +|+|....
T Consensus 88 ~F-----~~g---~AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~pls~~~~~~~YtC~l~G 159 (211)
T PF02124_consen 88 RF-----EDG---YAVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLVNIRSRRPLSDEDGPVEYTCRLIG 159 (211)
T ss_pred Ee-----cCC---EEEEEcceeeCCCeEEEEEECCccCCCCCceeecCcccCCcceeEeecccCCCccCCceeEEEEEee
Confidence 32 223 45687775553 589999877643222222221 122344544432 2345 89999863
No 411
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=82.34 E-value=5.1 Score=46.86 Aligned_cols=75 Identities=23% Similarity=0.405 Sum_probs=14.0
Q ss_pred ccEEEECCCCCCCCeEEEEEEEcCCceEE-EEEEEEEeCC--------Ce------------EEeCCCcEEEecCCeEEE
Q psy11143 7 STELVISGVQREHGGRYSCVAGNPAGVYR-GDLHVTVNAP--------PI------------FIQRPVSTTYSTGSTSRI 65 (940)
Q Consensus 7 ~~tL~I~~v~~sDsG~Y~C~a~n~~g~~~-~~v~l~V~~p--------P~------------~~~~p~~~~V~eGesv~L 65 (940)
.+.|.|.+++.+|+|.|+-.+.+..+... ..+.|.|..+ |. ....+.......|+++.|
T Consensus 88 ~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~~ 167 (439)
T PF02480_consen 88 KGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFHL 167 (439)
T ss_dssp ----------------------------------------------------------SEEEEEE--SEEE--TT--EE-
T ss_pred CCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEEE
Confidence 46799999999999999999987776543 3355555421 11 012233455678999888
Q ss_pred EEEeec--cC----CCeEEEEE
Q psy11143 66 TCLVEG--HP----LPQMTWFH 81 (940)
Q Consensus 66 ~C~v~g--~P----~p~V~W~k 81 (940)
.-.... .. ...|.||+
T Consensus 168 ~v~l~~~~~d~~~f~~~i~W~~ 189 (439)
T PF02480_consen 168 SVHLQSEAHDDPPFSLEIDWYY 189 (439)
T ss_dssp --EEEEEESSS--EEEEEEEEE
T ss_pred eEEEEeccCCCCCeeEEEEEEE
Confidence 877643 22 13789984
No 412
>PHA03286 envelope glycoprotein E; Provisional
Probab=81.81 E-value=40 Score=38.87 Aligned_cols=76 Identities=17% Similarity=0.121 Sum_probs=51.7
Q ss_pred cccEEEECCCCCCCCeEEEEEEEcCCceEE-EEEEEEEeC-----CCeEE--------------eCCCcEEEecCCeEEE
Q psy11143 6 SSTELVISGVQREHGGRYSCVAGNPAGVYR-GDLHVTVNA-----PPIFI--------------QRPVSTTYSTGSTSRI 65 (940)
Q Consensus 6 s~~tL~I~~v~~sDsG~Y~C~a~n~~g~~~-~~v~l~V~~-----pP~~~--------------~~p~~~~V~eGesv~L 65 (940)
..+.|+|.+++.+++|.|+-...|+.|... ..+.|.|.. +|... ..+.......|+++.+
T Consensus 125 ~~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~v 204 (492)
T PHA03286 125 RGKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDA 204 (492)
T ss_pred CCCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEE
Confidence 457899999999999999999999887554 445567731 12111 1233455678999987
Q ss_pred EEEeec-----cCCCeEEEEE
Q psy11143 66 TCLVEG-----HPLPQMTWFH 81 (940)
Q Consensus 66 ~C~v~g-----~P~p~V~W~k 81 (940)
.-.... .-...|.|++
T Consensus 205 Sv~l~~~~~d~~Fsl~i~W~y 225 (492)
T PHA03286 205 SVTAHLTNWAGAFSLEFRVLF 225 (492)
T ss_pred EEEEeecccCCCceEEEEEEE
Confidence 766542 1134889975
No 413
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=79.95 E-value=5.6 Score=35.76 Aligned_cols=69 Identities=17% Similarity=0.325 Sum_probs=42.8
Q ss_pred eCCCeeEEecCCeEEEEEEEee-----eCCCeEEEEECCeecCCCCceEEeecCeEEEEeeeccCCCeEEEEEE
Q psy11143 234 QRPVSTTYSTGSTSRITCLVEG-----HPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVA 302 (940)
Q Consensus 234 ~~p~~~~v~~G~~v~L~C~v~G-----~P~p~ItW~k~g~~l~~~~~~~~~~~g~sL~I~~v~~~DsG~YtC~A 302 (940)
+.|+...+..|++++..|.... .....|.|..++..++.+....+....+++++.+......-.|-|..
T Consensus 8 i~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 8 ISPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp EECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEE
T ss_pred EecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCCeEEEEEEccCCCCCceEEEEEE
Confidence 3455667889999999999853 24558999999997766544333333344666666655555666653
No 414
>PHA03283 envelope glycoprotein E; Provisional
Probab=79.79 E-value=10 Score=44.33 Aligned_cols=87 Identities=20% Similarity=0.132 Sum_probs=57.6
Q ss_pred ceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEEEEecCCCCCCC-CCCC--CCCC------------CCCCcccccccee
Q psy11143 375 GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPA-PHTS--REPS------------ASKPSVADDTIHM 439 (940)
Q Consensus 375 ~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~~~~~~~-p~~~--~~~~------------~~~~~~~d~~~~~ 439 (940)
+.|.|.+++.+++|.|+-...|..|.....+.|+|+.+...+.. |... ..|+ ...-+.||.+...
T Consensus 134 ~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~ls 213 (542)
T PHA03283 134 SVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFDLS 213 (542)
T ss_pred CeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCceeEe
Confidence 46999999999999999999998887777778888874432211 1110 0011 1122456666664
Q ss_pred eeeecccccCcccceEEEeccCC
Q psy11143 440 AVKLASREVDAAVNATINSLFGY 462 (940)
Q Consensus 440 ~~~~~~~~~d~~in~t~~~lf~~ 462 (940)
.. ......|++++.++.|+|-.
T Consensus 214 i~-l~s~~~d~~fs~~i~Wyy~p 235 (542)
T PHA03283 214 VH-LESDIGDPSFSATIDWYYMN 235 (542)
T ss_pred EE-EeeccCCCCceEEEEEEEec
Confidence 44 33555688899999999844
No 415
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=79.74 E-value=5 Score=44.79 Aligned_cols=21 Identities=14% Similarity=0.596 Sum_probs=17.4
Q ss_pred eEEEEEEeec-cCC-CeEEEEEC
Q psy11143 62 TSRITCLVEG-HPL-PQMTWFHD 82 (940)
Q Consensus 62 sv~L~C~v~g-~P~-p~V~W~kd 82 (940)
.++|+|.|.| +|. ..++|.|+
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 5799999999 454 48899999
No 416
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=78.82 E-value=6.8 Score=43.76 Aligned_cols=21 Identities=19% Similarity=0.760 Sum_probs=17.3
Q ss_pred eEEEEEEEeee-CCC-eEEEEEC
Q psy11143 246 TSRITCLVEGH-PLP-QMTWFHD 266 (940)
Q Consensus 246 ~v~L~C~v~G~-P~p-~ItW~k~ 266 (940)
.++|+|.|.|. |.. .++|.|+
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999995 433 7889999
No 417
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=77.60 E-value=21 Score=31.42 Aligned_cols=38 Identities=16% Similarity=0.216 Sum_probs=27.1
Q ss_pred CCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEE
Q psy11143 74 LPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 119 (940)
Q Consensus 74 ~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~ 119 (940)
.+++.|+-.+..+ ......+.......+|+|.++|.|+
T Consensus 26 ~~~~~l~~~~~k~--------~~~~~~~~~~~~~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 26 KPSLFLENPGKKS--------LETKKLVSTFTPTTEDSGTWVCTAS 63 (80)
T ss_dssp CEEEEEECSSCEE--------EEESSEEEEESBTCGGSEEEEEEEE
T ss_pred ChhheeeccCccc--------cccceEEEEecCCCCCCEEEEEEEc
Confidence 3477787655443 2344556777888999999999995
No 418
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=76.59 E-value=21 Score=33.04 Aligned_cols=56 Identities=21% Similarity=0.323 Sum_probs=35.5
Q ss_pred CcCCC--eEEEEeCCeeecc---CCcEEEee-eceEEEecCCCCCCeEEEEEEEeCCeeEEE
Q psy11143 348 GEPLP--RISWSKDEAEFVE---DRNHKIHR-TGSLRLYNIGPQDSGLYRCTASNLLGEDVA 403 (940)
Q Consensus 348 g~P~p--~i~W~k~g~~i~~---~~~~~i~~-~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~ 403 (940)
..+.. .++|..+...... +.++.+.. +-+|.|+.++..|+|.|.-+++|..|....
T Consensus 38 s~~~~~~IltW~n~~~~~~~~~~n~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~ 99 (108)
T PF11465_consen 38 SQKKFEVILTWKNDSTPSYNSSFNNRFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCT 99 (108)
T ss_dssp SSSEEE-EEEEETTEEEESSTTHHHHEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEE
T ss_pred cCCceEEEEEEcCCCcccccccccceEeeeccCceEEEeecCcccCceEEEEEEcCCCcEEE
Confidence 44444 3566544433322 23444433 458999999999999999999999997743
No 419
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=74.18 E-value=4.7 Score=47.27 Aligned_cols=290 Identities=13% Similarity=0.098 Sum_probs=22.3
Q ss_pred eEEEEEEeeccCCCeEEEEECCEe----ecCCCCeEEEeeceEEEEccccc-CCCeEEEEEEE-eCCCceEE--EEEEEE
Q psy11143 62 TSRITCLVEGHPLPQMTWFHDGNS----LDSDDHVTYEHDGFVLVLNGVRE-SDAGVYNCVAQ-NSEGSAES--VAMIRI 133 (940)
Q Consensus 62 sv~L~C~v~g~P~p~V~W~kdg~~----I~~~~~~~~~~~gs~L~I~~v~~-~DsG~YtC~a~-n~~g~~~~--~~~L~V 133 (940)
.+.|.|... -...+.|...... ...... ..+...|.|..... .-...|...+. ........ .+.|.|
T Consensus 2 ~~~~~C~~~--~~~~y~W~~~~~~~~~~~~~~~~---~~~~~~l~ip~~~L~~G~y~~~~~Vt~~~~~~~~~~~~~~v~V 76 (440)
T PF02010_consen 2 HVSLNCNDA--STVTYNWTVFSGPSNSIVQDMDN---SSNTPQLTIPPYTLPPGDYTFTLTVTASSNPGLSSTDSVTVTV 76 (440)
T ss_dssp ----------------BEEEEES-TT-EEESTTT-----SSSECEEECES--SCEEEEEEEEE--BCTTEEEEEEEEEEE
T ss_pred Ccccccccc--cceEEEEEEEecCCcCccccccc---cCCceEEEeCcccCCCCCEEEEEEEEEECCCCceEEEEEEEEE
Confidence 467789432 3447889752211 110001 12234567777655 22235667776 33333333 444444
Q ss_pred ecccCCeeEecCCceeecCCCcEEEEEEeCCCC-------CCeEEEeeCCeecc-------ccCceEEeeeceEEEeecc
Q psy11143 134 NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEP-------LPRISWSKDEAEFV-------EDRNHKIHRTGSLRLYNIG 199 (940)
Q Consensus 134 ~~~~~P~~~~~p~~~~v~~Ge~vtL~C~v~g~P-------~p~ItW~k~g~~i~-------~~~~~~~~~~~sL~I~~v~ 199 (940)
...+...++.......+..++.+.|.......| ...+.|......-. ............+.|..-.
T Consensus 77 ~~s~l~~~I~gG~~~~~~~~~~i~ldgs~S~Dpd~~~~~~~l~y~W~C~~~~~~~~C~~~~~~~~~~~~~~~~l~i~~~~ 156 (440)
T PF02010_consen 77 EPSPLVAVIKGGSSRTVGYNSDITLDGSQSYDPDGPPGDSGLTYSWSCTDLSSNSACSTPSTNITLLNSSSSSLTIPAST 156 (440)
T ss_dssp E-------------------------------------------------------------------------------
T ss_pred eeccceeEEcCCccceeecCceEEEeeEEEecccccccCCceEEEEEEeCCceeccccccccccccCCCCCEEEEEEhHH
Confidence 432221222222233444455677776544333 23677876332211 0001111223456664433
Q ss_pred cCCCceEEE--EEEcCCc-ceeeeeeeeecC-CCCeeeeCCCe---eEEecCCeEEEEEEEeee----CCCeEEEEE---
Q psy11143 200 PQDSGLYRC--TASNLLG-EDVAEGYLTVTG-APPIFIQRPVS---TTYSTGSTSRITCLVEGH----PLPQMTWFH--- 265 (940)
Q Consensus 200 ~~DsG~YtC--~a~N~~g-~~s~s~~L~V~~-~~p~~~~~p~~---~~v~~G~~v~L~C~v~G~----P~p~ItW~k--- 265 (940)
..-...|.. .++...+ .......+.+.. .+|.+.+.... ..+..++.+.|...+.+. ....+.|..
T Consensus 157 l~~~~~y~f~ltv~k~~r~s~s~~~~v~v~~~~~p~v~I~~~~n~~~~vn~~~~l~L~~~~~~~~~~~~~~~y~Wsl~~~ 236 (440)
T PF02010_consen 157 LSPGSTYTFTLTVSKGSRSSSSASQTVTVVSGDPPTVSISCVSNCKGKVNPSERLVLQASCSSCDSDSSNVSYSWSLFSL 236 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCceEEEEEEEEeCCCCceeeEEEEEeccCCCCceeEccccccccccCCCCCEEEEEEEeCCCCcCCCEEEEEEEeec
Confidence 322222544 4443333 233344444432 33433333221 237778877776555432 234778876
Q ss_pred -----CCeecCCC-CceEEeecCeEEEEeeeccCCCeEEEEE--EEeCCCCceeEEEEEEeeccCCe---EEEcCCceee
Q psy11143 266 -----DGNSLDSD-DHVTYEHDGFVLVLNGVRESDAGVYNCV--AQNSEGSAESVAMIRINGHRAPR---LVVKPFDMRA 334 (940)
Q Consensus 266 -----~g~~l~~~-~~~~~~~~g~sL~I~~v~~~DsG~YtC~--A~N~~Gs~~~s~~l~V~~~~~P~---i~~~p~~~~v 334 (940)
....+... ........+..|.|..-.....+.|... +....+... .+.+.+....||. +.+.|..- .
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~Lvi~~~~l~~g~~Y~~~l~v~~~~~~~~-~a~~~~~~n~pP~~g~c~v~P~~G-~ 314 (440)
T PF02010_consen 237 DGVSDSNSELPDWSSMTTTGSSSSNLVIDPGVLEPGSTYTFRLTVTDSSGSSG-SASISFTVNAPPSGGSCSVSPSSG-Y 314 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccc-c
Confidence 11111111 1111112333477776555556667654 444444331 3334444445663 44444322 3
Q ss_pred cCCCeEEEEEeecCcC--CCeEEEEe
Q psy11143 335 PAGSSVEIPCKPDGEP--LPRISWSK 358 (940)
Q Consensus 335 ~~G~~vtL~C~v~g~P--~p~i~W~k 358 (940)
.....+++.|..-..+ +-.|.|..
T Consensus 315 al~T~Ft~~c~~~~d~~~pL~Y~f~~ 340 (440)
T PF02010_consen 315 ALETTFTITCSGWTDDDQPLTYQFYY 340 (440)
T ss_dssp --------------------------
T ss_pred cccccccccccccccccccccccccc
Confidence 4446788999744222 22666655
No 420
>PHA03281 envelope glycoprotein E; Provisional
Probab=73.62 E-value=92 Score=36.82 Aligned_cols=75 Identities=17% Similarity=0.277 Sum_probs=48.9
Q ss_pred ccEEEECCCCCCCCeEEEEEEEcCCceEE-EEEEEEEeCC-------CeEEeCC----------CcEEEecCCeEEEEEE
Q psy11143 7 STELVISGVQREHGGRYSCVAGNPAGVYR-GDLHVTVNAP-------PIFIQRP----------VSTTYSTGSTSRITCL 68 (940)
Q Consensus 7 ~~tL~I~~v~~sDsG~Y~C~a~n~~g~~~-~~v~l~V~~p-------P~~~~~p----------~~~~V~eGesv~L~C~ 68 (940)
.+.|+|.+++.+++|.|+-......|... ..+.|+|+.. |.+..++ .......|+++.|.-.
T Consensus 297 ~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~ 376 (642)
T PHA03281 297 PGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMH 376 (642)
T ss_pred CCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEEE
Confidence 35899999999999999988886655333 3555666531 2111111 1345678999988877
Q ss_pred eecc--C---CCeEEEEE
Q psy11143 69 VEGH--P---LPQMTWFH 81 (940)
Q Consensus 69 v~g~--P---~p~V~W~k 81 (940)
.... . ...|.|++
T Consensus 377 L~s~ihD~pFsleI~Wyy 394 (642)
T PHA03281 377 LQYKIHDAPFDLLLEWLY 394 (642)
T ss_pred EeeeccCCCceeEEEEEE
Confidence 6432 2 23899984
No 421
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=65.07 E-value=64 Score=29.19 Aligned_cols=80 Identities=19% Similarity=0.224 Sum_probs=48.4
Q ss_pred eEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeC--CeeccccCceEEeeeceEEEeecccCCCceEEEEEEcCCccee
Q psy11143 141 LVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV 218 (940)
Q Consensus 141 ~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~--g~~i~~~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~~s 218 (940)
+.+.|....|..|+++.+.|...-..+..+.|.-. +..+...... ..+.+.+++. .....|.+.-......
T Consensus 6 v~v~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L~k~~~~~g~~W-----~~f~LsnV~~--ds~~~C~~~C~g~Q~~ 78 (91)
T PF03921_consen 6 VRVSPEEPVVPPGGSVWVNCSTSCPQPEKIGLETSLSKTELDSGPQW-----KAFQLSNVTE--DSSPLCFFNCSGEQSS 78 (91)
T ss_dssp EEEESSEEEEETTEEEEEEEEESSSS-SEEEEESSSEEEEEEEETTE-----EEEEEEEE-S--CEEEEEEEEETTEEEE
T ss_pred EEEECCccEECCCCCEEEEEcCCCCCCCcceEEEecCCcccCCCCcE-----EEEEEEcccc--CCeEEEEEEcCCeEEE
Confidence 45677788899999999999986322234555331 1111111111 1467788875 4677899876444456
Q ss_pred eeeeeeecC
Q psy11143 219 AEGYLTVTG 227 (940)
Q Consensus 219 ~s~~L~V~~ 227 (940)
.++.|+|+.
T Consensus 79 ~~~~ItVY~ 87 (91)
T PF03921_consen 79 ASANITVYK 87 (91)
T ss_dssp EEEEEEEEB
T ss_pred eEEeeEEeC
Confidence 677788873
No 422
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=64.91 E-value=50 Score=29.06 Aligned_cols=51 Identities=20% Similarity=0.252 Sum_probs=32.7
Q ss_pred CeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEE-EeCCeeEEEEEEEEE
Q psy11143 352 PRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTA-SNLLGEDVAEGYLTV 409 (940)
Q Consensus 352 p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A-~N~~G~~~~s~~L~V 409 (940)
+.+.|+-.+..+ ..............+|+|.++|.| .+..-.......|.|
T Consensus 27 ~~~~l~~~~~k~-------~~~~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 27 PSLFLENPGKKS-------LETKKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp EEEEEECSSCEE-------EEESSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred hhheeeccCccc-------cccceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 466676554433 222334566777889999999999 666555555555544
No 423
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=64.54 E-value=6.6 Score=46.01 Aligned_cols=256 Identities=13% Similarity=0.115 Sum_probs=24.6
Q ss_pred cEEEEEEeCCCCCCeEEEeeCCeec---cccCceEEeeeceEEEeeccc-CCCceEEEEEE--cC-CcceeeeeeeeecC
Q psy11143 155 SVEIPCKPDGEPLPRISWSKDEAEF---VEDRNHKIHRTGSLRLYNIGP-QDSGLYRCTAS--NL-LGEDVAEGYLTVTG 227 (940)
Q Consensus 155 ~vtL~C~v~g~P~p~ItW~k~g~~i---~~~~~~~~~~~~sL~I~~v~~-~DsG~YtC~a~--N~-~g~~s~s~~L~V~~ 227 (940)
.+.|.|... -...+.|..-.... ...... ......|.|..-.. .....|...++ +. .......+.|.|..
T Consensus 2 ~~~~~C~~~--~~~~y~W~~~~~~~~~~~~~~~~-~~~~~~l~ip~~~L~~G~y~~~~~Vt~~~~~~~~~~~~~~v~V~~ 78 (440)
T PF02010_consen 2 HVSLNCNDA--STVTYNWTVFSGPSNSIVQDMDN-SSNTPQLTIPPYTLPPGDYTFTLTVTASSNPGLSSTDSVTVTVEP 78 (440)
T ss_dssp ----------------BEEEEES-TT-EEESTTT---SSSECEEECES--SCEEEEEEEEE--BCTTEEEEEEEEEEEE-
T ss_pred Ccccccccc--cceEEEEEEEecCCcCccccccc-cCCceEEEeCcccCCCCCEEEEEEEEEECCCCceEEEEEEEEEee
Confidence 356789332 34578897622111 100000 12234677777655 22345667776 22 22345566677764
Q ss_pred CCCeeeeCC-CeeEEecCCeEEEEEEEeeeC-------CCeEEEEECCeecCCC------CceEEeecCeEEEEeeeccC
Q psy11143 228 APPIFIQRP-VSTTYSTGSTSRITCLVEGHP-------LPQMTWFHDGNSLDSD------DHVTYEHDGFVLVLNGVRES 293 (940)
Q Consensus 228 ~~p~~~~~p-~~~~v~~G~~v~L~C~v~G~P-------~p~ItW~k~g~~l~~~------~~~~~~~~g~sL~I~~v~~~ 293 (940)
.+....+.. ....+..++.+.|.....-.| .-.+.|......-... ........+..+.|..-...
T Consensus 79 s~l~~~I~gG~~~~~~~~~~i~ldgs~S~Dpd~~~~~~~l~y~W~C~~~~~~~~C~~~~~~~~~~~~~~~~l~i~~~~l~ 158 (440)
T PF02010_consen 79 SPLVAVIKGGSSRTVGYNSDITLDGSQSYDPDGPPGDSGLTYSWSCTDLSSNSACSTPSTNITLLNSSSSSLTIPASTLS 158 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccceeEEcCCccceeecCceEEEeeEEEecccccccCCceEEEEEEeCCceeccccccccccccCCCCCEEEEEEhHHcC
Confidence 443333322 222333345666665433222 2366787543222100 00111122334666443322
Q ss_pred CCeEEEEEEE--eCCC-CceeEEEEEEeeccCCeEEEcCCc---eeecCCCeEEEEEeecCcC----CCeEEEEe-----
Q psy11143 294 DAGVYNCVAQ--NSEG-SAESVAMIRINGHRAPRLVVKPFD---MRAPAGSSVEIPCKPDGEP----LPRISWSK----- 358 (940)
Q Consensus 294 DsG~YtC~A~--N~~G-s~~~s~~l~V~~~~~P~i~~~p~~---~~v~~G~~vtL~C~v~g~P----~p~i~W~k----- 358 (940)
-...|+..+. ...+ .......+.+....+|.+.+.... ..+..++.+.|.-.+.+.+ ...+.|..
T Consensus 159 ~~~~y~f~ltv~k~~r~s~s~~~~v~v~~~~~p~v~I~~~~n~~~~vn~~~~l~L~~~~~~~~~~~~~~~y~Wsl~~~~~ 238 (440)
T PF02010_consen 159 PGSTYTFTLTVSKGSRSSSSASQTVTVVSGDPPTVSISCVSNCKGKVNPSERLVLQASCSSCDSDSSNVSYSWSLFSLDG 238 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEEEEEEeCCCCceeeEEEEEeccCCCCceeEccccccccccCCCCCEEEEEEEeCCCCcCCCEEEEEEEeeccc
Confidence 2222555544 3333 223444555554556655544322 2367777777776655432 34788987
Q ss_pred ---CCeeecc--CCcEEEeeeceEEEecCCCCCCeEEE--EEEEeCCeeE-EEEEEEEEecCC
Q psy11143 359 ---DEAEFVE--DRNHKIHRTGSLRLYNIGPQDSGLYR--CTASNLLGED-VAEGYLTVTGEN 413 (940)
Q Consensus 359 ---~g~~i~~--~~~~~i~~~~sL~I~~v~~~D~G~Yt--C~A~N~~G~~-~~s~~L~V~~~~ 413 (940)
....+.. .....-.....|.|..-..+..+.|. +.|.+..+.. .++..+.+..+|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~Lvi~~~~l~~g~~Y~~~l~v~~~~~~~~~a~~~~~~n~pP 301 (440)
T PF02010_consen 239 VSDSNSELPDWSSMTTTGSSSSNLVIDPGVLEPGSTYTFRLTVTDSSGSSGSASISFTVNAPP 301 (440)
T ss_dssp ---------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1111110 11111112335677655555555665 5666655543 455556664443
No 424
>PHA03052 Hypothetical protein; Provisional
Probab=63.51 E-value=28 Score=29.46 Aligned_cols=36 Identities=28% Similarity=0.453 Sum_probs=28.6
Q ss_pred CCcEEEecCCeEEEEEEee-c--cCCCeEEEEECCEeec
Q psy11143 52 PVSTTYSTGSTSRITCLVE-G--HPLPQMTWFHDGNSLD 87 (940)
Q Consensus 52 p~~~~V~eGesv~L~C~v~-g--~P~p~V~W~kdg~~I~ 87 (940)
|....+..|..++|.|.|. | ...+.|.|.-|+..+.
T Consensus 4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e 42 (69)
T PHA03052 4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE 42 (69)
T ss_pred CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence 4667889999999999995 2 3355889999998873
No 425
>KOG0200|consensus
Probab=63.23 E-value=78 Score=39.00 Aligned_cols=106 Identities=20% Similarity=0.305 Sum_probs=57.1
Q ss_pred eEEEEcccccCCCeEEEEEEEeCCCceEEEEEEEEecccC-C-eeEecCCceeecCCCcEEEEEEeCCCCCCeEEEeeCC
Q psy11143 99 FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRA-P-RLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDE 176 (940)
Q Consensus 99 s~L~I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V~~~~~-P-~~~~~p~~~~v~~Ge~vtL~C~v~g~P~p~ItW~k~g 176 (940)
..+.+..+...|.|.|+|.+.+ ......+. ..... + .....+.......+..+.+ +...+.+.+.|....
T Consensus 13 ~~~~~~~~~~~~~~~y~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 84 (609)
T KOG0200|consen 13 WFLIIDSVVPGDKGFYTCLVSN----INLIISLD-DIVIHRPILLAGENANPNTVVTVGVPL---AFSIPQPFIKWGTNL 84 (609)
T ss_pred ceEEEEEEEecCCccEEEEEec----CceeeEee-cccCcccccccCCCCCcceeeccccee---eeecCCCcceeeeee
Confidence 3458888999999999999998 11121222 11111 1 1112233344455555555 222335567776533
Q ss_pred eec-----cccCc-------------eEEeeeceEEEeecccCCCceEEEEEEc
Q psy11143 177 AEF-----VEDRN-------------HKIHRTGSLRLYNIGPQDSGLYRCTASN 212 (940)
Q Consensus 177 ~~i-----~~~~~-------------~~~~~~~sL~I~~v~~~DsG~YtC~a~N 212 (940)
... ..... ........+.+.++...+.+.|.|....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~ 138 (609)
T KOG0200|consen 85 EIECEDGLFEYKTKKTLSFVEIEYNRLVDGTFESGLIYNVSLTEAGEYLCWTGR 138 (609)
T ss_pred cccccccCcchhheeeeeeeeccccccccCceEeeeeeccChhhcceeeccCCC
Confidence 110 00000 0001223578889999999999998865
No 426
>KOG0200|consensus
Probab=55.91 E-value=1.1e+02 Score=37.62 Aligned_cols=109 Identities=16% Similarity=0.164 Sum_probs=62.3
Q ss_pred CcccEEEECCCCCCCCeEEEEEEEcCCceEEEEEEEE-Ee-CCC-eEEeCCCcEEEecCCeEEEEEEeeccCCCeEEEEE
Q psy11143 5 RSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVT-VN-APP-IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFH 81 (940)
Q Consensus 5 ~s~~tL~I~~v~~sDsG~Y~C~a~n~~g~~~~~v~l~-V~-~pP-~~~~~p~~~~V~eGesv~L~C~v~g~P~p~V~W~k 81 (940)
.....+.+..+...|.|.|+|.+.+ . ...+.+. .. ..+ .....+....+..+..+.+ +...+.+.+.|.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~y~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 82 (609)
T KOG0200|consen 10 INHWFLIIDSVVPGDKGFYTCLVSN--I--NLIISLDDIVIHRPILLAGENANPNTVVTVGVPL---AFSIPQPFIKWGT 82 (609)
T ss_pred eccceEEEEEEEecCCccEEEEEec--C--ceeeEeecccCcccccccCCCCCcceeeccccee---eeecCCCcceeee
Confidence 3567889999999999999999999 1 1111121 11 111 1122344444555666666 3333355777865
Q ss_pred CCEee----cCCCCe--EE-----------EeeceEEEEcccccCCCeEEEEEEEe
Q psy11143 82 DGNSL----DSDDHV--TY-----------EHDGFVLVLNGVRESDAGVYNCVAQN 120 (940)
Q Consensus 82 dg~~I----~~~~~~--~~-----------~~~gs~L~I~~v~~~DsG~YtC~a~n 120 (940)
..... ...... .. ......+.+.++...+.|.|.|...+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~ 138 (609)
T KOG0200|consen 83 NLEIECEDGLFEYKTKKTLSFVEIEYNRLVDGTFESGLIYNVSLTEAGEYLCWTGR 138 (609)
T ss_pred eecccccccCcchhheeeeeeeeccccccccCceEeeeeeccChhhcceeeccCCC
Confidence 44211 000000 00 11233478899999999999998876
No 427
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=54.37 E-value=1.7e+02 Score=26.52 Aligned_cols=80 Identities=23% Similarity=0.274 Sum_probs=48.1
Q ss_pred EEcCCceeecCCCeEEEEEeecCcCCC-eEEEEeCC--eeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEE
Q psy11143 326 VVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDE--AEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV 402 (940)
Q Consensus 326 ~~~p~~~~v~~G~~vtL~C~v~g~P~p-~i~W~k~g--~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~ 402 (940)
.+.|....+..|+++.+.|+.+- |.| .+-|.-.= ..+..+ .....+.+.+++. | ..-.|.+.=......
T Consensus 7 ~v~P~~~vV~~G~Sv~VNCStsC-~~p~~~GLET~L~k~~~~~g-----~~W~~f~LsnV~~-d-s~~~C~~~C~g~Q~~ 78 (91)
T PF03921_consen 7 RVSPEEPVVPPGGSVWVNCSTSC-PQPEKIGLETSLSKTELDSG-----PQWKAFQLSNVTE-D-SSPLCFFNCSGEQSS 78 (91)
T ss_dssp EEESSEEEEETTEEEEEEEEESS-SS-SEEEEESSSEEEEEEEE-----TTEEEEEEEEE-S-C-EEEEEEEEETTEEEE
T ss_pred EEECCccEECCCCCEEEEEcCCC-CCCCcceEEEecCCcccCCC-----CcEEEEEEEcccc-C-CeEEEEEEcCCeEEE
Confidence 44566778899999999999863 334 45553211 111111 1122577888886 4 567788876544667
Q ss_pred EEEEEEEecCC
Q psy11143 403 AEGYLTVTGEN 413 (940)
Q Consensus 403 ~s~~L~V~~~~ 413 (940)
+++.|+|..+|
T Consensus 79 ~~~~ItVY~~P 89 (91)
T PF03921_consen 79 ASANITVYKPP 89 (91)
T ss_dssp EEEEEEEEB--
T ss_pred eEEeeEEeCCC
Confidence 78888888765
No 428
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=54.10 E-value=1.1e+02 Score=27.22 Aligned_cols=56 Identities=18% Similarity=0.296 Sum_probs=35.5
Q ss_pred eEEEEEEeeccCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEEEEEeCCCceEE
Q psy11143 62 TSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES 127 (940)
Q Consensus 62 sv~L~C~v~g~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~ 127 (940)
...|.+++.+. ...+.||.||..+...... ..+. ......|.|+-.+....|...+
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~------~~~~---~~~~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQPG------HQLF---WQPDRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcccCCCC------CeEE---eCCCCCeeEEEEEEcCCCCEEE
Confidence 45555555554 3389999999998322211 1112 2345689999999888876554
No 429
>PHA03282 envelope glycoprotein E; Provisional
Probab=53.46 E-value=60 Score=37.63 Aligned_cols=39 Identities=28% Similarity=0.308 Sum_probs=27.3
Q ss_pred eeceEEEecCCCCCCeEEEEEEEeCCee--EEEEEEEEEec
Q psy11143 373 RTGSLRLYNIGPQDSGLYRCTASNLLGE--DVAEGYLTVTG 411 (940)
Q Consensus 373 ~~~sL~I~~v~~~D~G~YtC~A~N~~G~--~~~s~~L~V~~ 411 (940)
.+++|.|.++..+|+|.|+-.+...--. ..+.+.|+|..
T Consensus 122 ~n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~p 162 (540)
T PHA03282 122 VNGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVGP 162 (540)
T ss_pred ecceEEEeeccccCCceEEEEecCCCCchhheEEEEEEecC
Confidence 3678999999999999999987443332 33344555543
No 430
>PHA03189 UL14 tegument protein; Provisional
Probab=51.90 E-value=78 Score=34.72 Aligned_cols=82 Identities=23% Similarity=0.390 Sum_probs=45.5
Q ss_pred CCCcEEEecCCeEEEEEEeecc--CCCeEE-----EE----------ECCEeecCCC-------CeEEEeec----eEEE
Q psy11143 51 RPVSTTYSTGSTSRITCLVEGH--PLPQMT-----WF----------HDGNSLDSDD-------HVTYEHDG----FVLV 102 (940)
Q Consensus 51 ~p~~~~V~eGesv~L~C~v~g~--P~p~V~-----W~----------kdg~~I~~~~-------~~~~~~~g----s~L~ 102 (940)
.|.+..+..|+.+++.|.+..+ |..+|. |- ..|..+...- ..++..-+ .+|+
T Consensus 58 spAP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLt 137 (348)
T PHA03189 58 SPAPLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLT 137 (348)
T ss_pred CCCccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEE
Confidence 4566778999999999998544 443332 21 1233332221 11222111 1233
Q ss_pred EcccccCCCeEEEEEEEeCCCceEEEEEEEE
Q psy11143 103 LNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133 (940)
Q Consensus 103 I~~v~~~DsG~YtC~a~n~~g~~~~~~~L~V 133 (940)
+ ++..+-+|.|.|+..|.......+..+.|
T Consensus 138 F-~v~t~taG~Y~CvLrN~tHglv~~rf~iv 167 (348)
T PHA03189 138 F-RVSTSTAGMYECVLRNETHGLVLQRFVIV 167 (348)
T ss_pred E-EEEecccceEEEEeccccceeeeEEeeee
Confidence 3 46677899999999987655444333333
No 431
>PHA03052 Hypothetical protein; Provisional
Probab=47.25 E-value=44 Score=28.31 Aligned_cols=35 Identities=20% Similarity=0.414 Sum_probs=27.3
Q ss_pred CCceeecCCCeEEEEEeec---CcCCCeEEEEeCCeee
Q psy11143 329 PFDMRAPAGSSVEIPCKPD---GEPLPRISWSKDEAEF 363 (940)
Q Consensus 329 p~~~~v~~G~~vtL~C~v~---g~P~p~i~W~k~g~~i 363 (940)
|..+.+..|++++|.|++. +...+.+.|.-|+..+
T Consensus 4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 3456788999999999987 2334588999998877
No 432
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=45.58 E-value=11 Score=44.07 Aligned_cols=88 Identities=24% Similarity=0.237 Sum_probs=13.5
Q ss_pred eceEEEecCCCCCCeEEEEEEEeCCeeEEE-EEEEEEecCCCC--CCCCCCCCCCCCC------------CCccccccce
Q psy11143 374 TGSLRLYNIGPQDSGLYRCTASNLLGEDVA-EGYLTVTGENSV--EPAPHTSREPSAS------------KPSVADDTIH 438 (940)
Q Consensus 374 ~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~-s~~L~V~~~~~~--~~~p~~~~~~~~~------------~~~~~d~~~~ 438 (940)
.+.|.|.+++.+|+|.|+-...|..|.... .+.|.|.++... .+.|.....|+.. .-..||++..
T Consensus 88 ~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~~ 167 (439)
T PF02480_consen 88 KGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFHL 167 (439)
T ss_dssp ----------------------------------------------------------SEEEEEE--SEEE--TT--EE-
T ss_pred CCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEEE
Confidence 367999999999999999999988776554 455677665433 2223211111110 1123444444
Q ss_pred eeeeecccccC-cccceEEEeccCC
Q psy11143 439 MAVKLASREVD-AAVNATINSLFGY 462 (940)
Q Consensus 439 ~~~~~~~~~~d-~~in~t~~~lf~~ 462 (940)
...+... -+| ..++.++.|+|-.
T Consensus 168 ~v~l~~~-~~d~~~f~~~i~W~~~~ 191 (439)
T PF02480_consen 168 SVHLQSE-AHDDPPFSLEIDWYYMP 191 (439)
T ss_dssp --EEEEE-ESSS--EEEEEEEEEE-
T ss_pred eEEEEec-cCCCCCeeEEEEEEEec
Confidence 3333322 334 8899999999844
No 433
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=43.22 E-value=1.8e+02 Score=25.67 Aligned_cols=56 Identities=16% Similarity=0.179 Sum_probs=36.4
Q ss_pred eEEEEEeecCcCCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEE
Q psy11143 339 SVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA 403 (940)
Q Consensus 339 ~vtL~C~v~g~P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~ 403 (940)
...|.+++.+. .+.+.|+-||..+...... ..+.+ .....|.|+-++....|....
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~-----~~~~~---~~~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQPG-----HQLFW---QPDRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcccCCCC-----CeEEe---CCCCCeeEEEEEEcCCCCEEE
Confidence 45556666655 4599999999988322211 12322 234689999999988887654
No 434
>PHA03240 envelope glycoprotein M; Provisional
Probab=42.79 E-value=36 Score=35.16 Aligned_cols=71 Identities=18% Similarity=0.260 Sum_probs=42.9
Q ss_pred cEEEecCCeEEEEEEeeccCCCeEEEEE-------C-C---Eeec-----------------CCCCeEEEeeceEEEEcc
Q psy11143 54 STTYSTGSTSRITCLVEGHPLPQMTWFH-------D-G---NSLD-----------------SDDHVTYEHDGFVLVLNG 105 (940)
Q Consensus 54 ~~~V~eGesv~L~C~v~g~P~p~V~W~k-------d-g---~~I~-----------------~~~~~~~~~~gs~L~I~~ 105 (940)
.+++.+|+.|+|.-.--..|.-.+.||+ . | .++- .+....+.-..++|.|.+
T Consensus 32 evt~r~G~nVTLga~~~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i~~ 111 (258)
T PHA03240 32 EHTTREGDPLLLGGGHGLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTLIIAH 111 (258)
T ss_pred ecccccCCceeeCCcccCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceEEEEE
Confidence 4567889998887543334666899998 1 1 1110 112333344456679999
Q ss_pred cccCCCeEEEEEEEeCCCc
Q psy11143 106 VRESDAGVYNCVAQNSEGS 124 (940)
Q Consensus 106 v~~~DsG~YtC~a~n~~g~ 124 (940)
+..+|.|+|.-.--...|.
T Consensus 112 vn~sd~~nYcr~k~~~~g~ 130 (258)
T PHA03240 112 LNLSDAGEYCRKKCPPKGD 130 (258)
T ss_pred EeecCcchhhhccCCCCCC
Confidence 9999999985433333343
No 435
>PHA03281 envelope glycoprotein E; Provisional
Probab=42.59 E-value=98 Score=36.60 Aligned_cols=88 Identities=17% Similarity=0.195 Sum_probs=54.7
Q ss_pred eceEEEecCCCCCCeEEEEEEEeCCeeEEE-EEEEEEecCCCC-CCCCCCCCCCC----------CCCCccccccceeee
Q psy11143 374 TGSLRLYNIGPQDSGLYRCTASNLLGEDVA-EGYLTVTGENSV-EPAPHTSREPS----------ASKPSVADDTIHMAV 441 (940)
Q Consensus 374 ~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~-s~~L~V~~~~~~-~~~p~~~~~~~----------~~~~~~~d~~~~~~~ 441 (940)
.+.|.|.+.+..++|.|+-......|.... .+.|+|++.... .+.|.-...+. ...-..||.+.....
T Consensus 297 ~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~ 376 (642)
T PHA03281 297 PGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMH 376 (642)
T ss_pred CCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEEE
Confidence 357999999999999999888877674444 667788765411 11221111110 112245677655555
Q ss_pred eecccccCcccceEEEeccCC
Q psy11143 442 KLASREVDAAVNATINSLFGY 462 (940)
Q Consensus 442 ~~~~~~~d~~in~t~~~lf~~ 462 (940)
+... -.|.+++.++.|+|-.
T Consensus 377 L~s~-ihD~pFsleI~Wyy~p 396 (642)
T PHA03281 377 LQYK-IHDAPFDLLLEWLYVP 396 (642)
T ss_pred Eeee-ccCCCceeEEEEEEec
Confidence 4433 2578899999999844
No 436
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=42.38 E-value=90 Score=28.45 Aligned_cols=69 Identities=13% Similarity=0.218 Sum_probs=40.4
Q ss_pred eEEEEEe-ecCcCCCeEEEEeC--Cee---eccCCcEEEeeeceEEEecCCCCCCeEEEEEEEeCCeeEEEEEEE
Q psy11143 339 SVEIPCK-PDGEPLPRISWSKD--EAE---FVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYL 407 (940)
Q Consensus 339 ~vtL~C~-v~g~P~p~i~W~k~--g~~---i~~~~~~~i~~~~sL~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L 407 (940)
.+.-.|. +.|.|+..|+|.-+ |.. .....+-.+.-.+.+.+......|.-..+|.+....-+-..++.|
T Consensus 22 v~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L 96 (98)
T cd05890 22 MLVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTL 96 (98)
T ss_pred EEEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEe
Confidence 4566788 77999999999742 221 111111112223345556666677778999998764444444444
No 437
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=41.21 E-value=1.2e+02 Score=27.79 Aligned_cols=61 Identities=13% Similarity=0.290 Sum_probs=36.3
Q ss_pred EEEEEE-eCCCCCCeEEEee--CCeec---cccCceEEeeeceEEEeecccCCCceEEEEEEcCCcc
Q psy11143 156 VEIPCK-PDGEPLPRISWSK--DEAEF---VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE 216 (940)
Q Consensus 156 vtL~C~-v~g~P~p~ItW~k--~g~~i---~~~~~~~~~~~~sL~I~~v~~~DsG~YtC~a~N~~g~ 216 (940)
+.-.|. +.|.|+..|+|.- +|..- ....+-...-.+.+.+......|.-..+|.+......
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~ 89 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDR 89 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEecccc
Confidence 455898 5689999999975 23211 1111112222334555666677777899999875333
No 438
>PHA03286 envelope glycoprotein E; Provisional
Probab=41.13 E-value=1.5e+02 Score=34.52 Aligned_cols=87 Identities=20% Similarity=0.110 Sum_probs=52.0
Q ss_pred ceEEEecCCCCCCeEEEEEEEeCCeeEEE-EEEEEEecCCC----CCCCCCCCC--C-------CCCCCCccccccceee
Q psy11143 375 GSLRLYNIGPQDSGLYRCTASNLLGEDVA-EGYLTVTGENS----VEPAPHTSR--E-------PSASKPSVADDTIHMA 440 (940)
Q Consensus 375 ~sL~I~~v~~~D~G~YtC~A~N~~G~~~~-s~~L~V~~~~~----~~~~p~~~~--~-------~~~~~~~~~d~~~~~~ 440 (940)
+.|.|.+.+.+.+|.|+-...|.-|.... .+.|+|++... ....|.... . +....-..||.+....
T Consensus 127 ~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vSv 206 (492)
T PHA03286 127 KELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDASV 206 (492)
T ss_pred CceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEEE
Confidence 46999999999999999999998876555 44567754311 111111000 0 0111224456665333
Q ss_pred eeecccccCcccceEEEeccCC
Q psy11143 441 VKLASREVDAAVNATINSLFGY 462 (940)
Q Consensus 441 ~~~~~~~~d~~in~t~~~lf~~ 462 (940)
. ....-.|.+++.++.|+|-.
T Consensus 207 ~-l~~~~~d~~Fsl~i~W~y~p 227 (492)
T PHA03286 207 T-AHLTNWAGAFSLEFRVLFLP 227 (492)
T ss_pred E-EeecccCCCceEEEEEEEec
Confidence 2 33344677788999999844
No 439
>PHA03189 UL14 tegument protein; Provisional
Probab=41.03 E-value=1.5e+02 Score=32.54 Aligned_cols=74 Identities=27% Similarity=0.417 Sum_probs=40.1
Q ss_pred CCeeEEecCCeEEEEEEEeee--CCCeEE-----EEE----------CCeecCCCC-------ceEEeecC--eEEEEe-
Q psy11143 236 PVSTTYSTGSTSRITCLVEGH--PLPQMT-----WFH----------DGNSLDSDD-------HVTYEHDG--FVLVLN- 288 (940)
Q Consensus 236 p~~~~v~~G~~v~L~C~v~G~--P~p~It-----W~k----------~g~~l~~~~-------~~~~~~~g--~sL~I~- 288 (940)
+....+..|+.+++.|.+... |..+|. |.. .|..+...- +.++..-+ ..|+++
T Consensus 59 pAP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLtF 138 (348)
T PHA03189 59 PAPLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLTF 138 (348)
T ss_pred CCccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEEE
Confidence 444566789999999987554 333332 211 122221111 11222111 224443
Q ss_pred eeccCCCeEEEEEEEeCCCCc
Q psy11143 289 GVRESDAGVYNCVAQNSEGSA 309 (940)
Q Consensus 289 ~v~~~DsG~YtC~A~N~~Gs~ 309 (940)
++..+.+|.|.|+..|..-..
T Consensus 139 ~v~t~taG~Y~CvLrN~tHgl 159 (348)
T PHA03189 139 RVSTSTAGMYECVLRNETHGL 159 (348)
T ss_pred EEEecccceEEEEecccccee
Confidence 566788999999999875443
No 440
>KOG4289|consensus
Probab=39.89 E-value=1.1e+03 Score=31.90 Aligned_cols=439 Identities=14% Similarity=0.214 Sum_probs=196.1
Q ss_pred CCCCCCCeEEEEEEE-cCCc----eEEEEEEEEEeC----CCeEEeCCCcEEEecC---CeEEEEEEeeccC---CCeEE
Q psy11143 14 GVQREHGGRYSCVAG-NPAG----VYRGDLHVTVNA----PPIFIQRPVSTTYSTG---STSRITCLVEGHP---LPQMT 78 (940)
Q Consensus 14 ~v~~sDsG~Y~C~a~-n~~g----~~~~~v~l~V~~----pP~~~~~p~~~~V~eG---esv~L~C~v~g~P---~p~V~ 78 (940)
.++.+..-.|+-.+. +..| .....+.++|.. .|.|....-.++|.|. ..+.|+-+++... ...|.
T Consensus 331 ~lDRE~~~~y~L~VeAsDqG~~pgp~Ta~V~itV~D~NDNaPqFse~~Yvvqv~Edvt~~avvlrV~AtDrD~g~Ng~VH 410 (2531)
T KOG4289|consen 331 PLDREELESYQLDVEASDQGRPPGPRTAMVEITVEDENDNAPQFSEKRYVVQVREDVTPPAVVLRVTATDRDKGTNGKVH 410 (2531)
T ss_pred ccCHHhhhheEEEEEeccCCCCCCCceEEEEEEEEecCCCCccccccceEEEecccCCCCceEEEEEecccCCCcCceEE
Confidence 445566667777665 2222 334445566642 4666655555555554 2567777775322 12333
Q ss_pred EEE-CCEeecCCCCeEEE-eeceEEEEcccccCCCeEEEEEEEeCCCceEE-----EEEEEEec--ccCCeeEecCCcee
Q psy11143 79 WFH-DGNSLDSDDHVTYE-HDGFVLVLNGVRESDAGVYNCVAQNSEGSAES-----VAMIRING--HRAPRLVVKPFDMR 149 (940)
Q Consensus 79 W~k-dg~~I~~~~~~~~~-~~gs~L~I~~v~~~DsG~YtC~a~n~~g~~~~-----~~~L~V~~--~~~P~~~~~p~~~~ 149 (940)
... .|.. ...+.+. .+|.+-.+..+..+++ .|+-.++-..|.... ...++|.. ...|.++..|...+
T Consensus 411 Ysi~Sgn~---~G~f~id~~tGel~vv~plD~e~~-~ytl~IrAqDggrPpLsn~sgl~iqVlDINDhaPifvstpfq~t 486 (2531)
T KOG4289|consen 411 YSIASGNG---RGQFYIDSLTGELDVVEPLDFENS-EYTLRIRAQDGGRPPLSNTSGLVIQVLDINDHAPIFVSTPFQAT 486 (2531)
T ss_pred EEeeccCc---cccEEEecccceEEEeccccccCC-eeEEEEEcccCCCCCccCCCceEEEEEecCCCCceeEechhhhh
Confidence 321 1111 1123333 4455546667777777 999888766554221 22244432 24578888887777
Q ss_pred ecCCCcE-EEEEEeCC-----CCCCeEEEeeCCeeccccCceEEee-eceEEEeec-ccCCCceEEEEEEc-CCcc----
Q psy11143 150 APAGSSV-EIPCKPDG-----EPLPRISWSKDEAEFVEDRNHKIHR-TGSLRLYNI-GPQDSGLYRCTASN-LLGE---- 216 (940)
Q Consensus 150 v~~Ge~v-tL~C~v~g-----~P~p~ItW~k~g~~i~~~~~~~~~~-~~sL~I~~v-~~~DsG~YtC~a~N-~~g~---- 216 (940)
+.+...+ .+.|.+.. .+...+.+...|.. .+.+.. ++-++.... .++..-.|.-.+.. ..|.
T Consensus 487 vlEnv~lg~~v~~vqaidadsg~na~l~y~laG~~-----pf~I~~~SG~Itvtk~ldrEt~~~ysl~V~ard~gtp~l~ 561 (2531)
T KOG4289|consen 487 VLENVPLGYLVCHVQAIDADSGENARLHYSLAGVG-----PFQINNGSGWITVTKELDRETVEHYSLGVEARDHGTPPLS 561 (2531)
T ss_pred hhhcccccceEEEEecccCCCCcccceeeeeccCC-----CeeEecCCceEEEeecccccccceEEEEEEEcCCCCCccc
Confidence 6664443 35565542 12234444443321 122211 222222222 22333344443332 1221
Q ss_pred eeeeeeeeec---CCCCeeeeCCCeeEEec----CCeEEEEEEEeeeC-CCeEEEEECCeecCCCCceEEee---cCeEE
Q psy11143 217 DVAEGYLTVT---GAPPIFIQRPVSTTYST----GSTSRITCLVEGHP-LPQMTWFHDGNSLDSDDHVTYEH---DGFVL 285 (940)
Q Consensus 217 ~s~s~~L~V~---~~~p~~~~~p~~~~v~~----G~~v~L~C~v~G~P-~p~ItW~k~g~~l~~~~~~~~~~---~g~sL 285 (940)
.+.++.+.+. ...|.+....-...+.+ |+++ ++-.+...- ...|+..-.|..- ..++.+.. .|..+
T Consensus 562 tstsI~Vtv~dvndndP~Ft~~eytl~inED~pvgsSI-~tvtAvD~d~~s~ityqi~g~nt--rn~Fsi~si~g~Glit 638 (2531)
T KOG4289|consen 562 TSTSISVTVLDVNDNDPTFTQKEYTLRINEDAPVGSSI-VTVTAVDRDANSVITYQITGGNT--RNRFSISSIGGGGLIT 638 (2531)
T ss_pred ccceEEEEecccCCCCCccccCceEEEecCCccccceE-EEEEEeccccccceEEEecCCcc--cccceeeccCCcceEE
Confidence 2223333332 24566665544444333 3332 222222221 2234433322211 11222221 12212
Q ss_pred EEeeeccCCCeEEEEEEEeCCCCceeEEE--EEEee--ccCCeEEEcCCceeecC----CCeE-EEEEeecCcCCC-eEE
Q psy11143 286 VLNGVRESDAGVYNCVAQNSEGSAESVAM--IRING--HRAPRLVVKPFDMRAPA----GSSV-EIPCKPDGEPLP-RIS 355 (940)
Q Consensus 286 ~I~~v~~~DsG~YtC~A~N~~Gs~~~s~~--l~V~~--~~~P~i~~~p~~~~v~~----G~~v-tL~C~v~g~P~p-~i~ 355 (940)
..........+.|.-.++-..|....... +.|.. ...|.|...|-.+++.+ |.+| +|.-.-.-.+.. .|+
T Consensus 639 lalp~dkKqe~~~vl~vtAtDg~l~d~~~V~v~I~danThrpvFqs~pfTvsI~e~rP~G~tvvtlsasd~D~geNARI~ 718 (2531)
T KOG4289|consen 639 LALPLDKKQERQYVLAVTATDGTLQDTCSVNVNITDANTHRPVFQSSPFTVSINEDRPLGTTVVTLSASDEDTGENARIT 718 (2531)
T ss_pred eecchhhcccceEEEEEEecCCccccceEEEEEeeecccCCcccccCCeeEeeccCCcCCceeEEEecccCCCCccceEE
Confidence 22223345567887777766665554444 33332 24666766665555543 4432 332222222222 444
Q ss_pred EEeCCeeeccCCcEEEeee--ceEEEecCCCCCCeEEEEEEE---eCCeeEEEEEEEEEecCCCCCCCCCCCCCCCCCCC
Q psy11143 356 WSKDEAEFVEDRNHKIHRT--GSLRLYNIGPQDSGLYRCTAS---NLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKP 430 (940)
Q Consensus 356 W~k~g~~i~~~~~~~i~~~--~sL~I~~v~~~D~G~YtC~A~---N~~G~~~~s~~L~V~~~~~~~~~p~~~~~~~~~~~ 430 (940)
..... ..+.+..+ ...+...+..+|.-.|+-... |..-....+.+|.|.......-+|++....-. ..
T Consensus 719 y~led------~~Frid~dsg~i~t~~~ld~edqvtytl~itA~D~~~pq~adtttveV~v~diNDnaPqf~assyt-~s 791 (2531)
T KOG4289|consen 719 YILED------EAFRIDPDSGAIYTQAELDYEDQVTYTLAITARDNGIPQKADTTTVEVLVNDINDNAPQFLASSYT-GS 791 (2531)
T ss_pred EEecc------cceeecCCCCceEEeeeeecccceeeEeeeeecCCCCCCcCccEEEEEEeecccccCcccchhhce-eE
Confidence 42221 12233221 234555666777778876443 22223333444444433222334443332211 11
Q ss_pred ccccccceeeeee-cccccCcccceEEEeccCCCCccccccccce
Q psy11143 431 SVADDTIHMAVKL-ASREVDAAVNATINSLFGYHSNEQQDHGSLM 474 (940)
Q Consensus 431 ~~~d~~~~~~~~~-~~~~~d~~in~t~~~lf~~~~~~~~~~~~ll 474 (940)
...|....+.+.+ ..-..|...|......|++.... +++|+
T Consensus 792 V~Ed~Pv~TsvlQVSatDaD~g~Ng~v~y~~qg~~d~---p~~F~ 833 (2531)
T KOG4289|consen 792 VFEDAPVFTSVLQVSATDADSGPNGRVYYTFQGGDDG---PGDFY 833 (2531)
T ss_pred eecCCCCcceEEEEEEeccCCCCCceEEEEecCCCCC---CCceE
Confidence 2223333344433 23367888888888888775544 44444
No 441
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=38.91 E-value=1.6e+02 Score=24.40 Aligned_cols=60 Identities=17% Similarity=0.261 Sum_probs=36.6
Q ss_pred eeecCCCeEEEEEeecCcCCCeEEEEeCC-eeeccCCcEEEeeeceEEEecCCCCCCeEEE--EEEEeCCeeEE
Q psy11143 332 MRAPAGSSVEIPCKPDGEPLPRISWSKDE-AEFVEDRNHKIHRTGSLRLYNIGPQDSGLYR--CTASNLLGEDV 402 (940)
Q Consensus 332 ~~v~~G~~vtL~C~v~g~P~p~i~W~k~g-~~i~~~~~~~i~~~~sL~I~~v~~~D~G~Yt--C~A~N~~G~~~ 402 (940)
..+..|+.++|...........+.|..++ .....+.... . .....|.|. ..|.|..|...
T Consensus 6 ~~~~~g~~v~f~~~~~~g~~~~y~W~fgd~~~~~~~~~~t------~-----ty~~~G~y~V~ltv~n~~g~~t 68 (69)
T PF00801_consen 6 TYVPTGQPVTFTASSSDGSPVTYSWDFGDNGTVSTGSSVT------H-----TYSSPGTYTVTLTVTNGVGSAT 68 (69)
T ss_dssp SCEBTTSEEEEEETTTTSSECEEEEE-SSESEEECSSEEE------E-----EESSSEEEEEEEEEEETTSEEE
T ss_pred CEEcCCCEEEEEEEccCCCCeEEEEEECCCCccccCCCEE------E-----EcCCCeEEEEEEEEEECCCCcC
Confidence 35778999999998833334499999988 2222222111 1 123478885 57788887654
No 442
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=36.36 E-value=2.7e+02 Score=23.60 Aligned_cols=64 Identities=19% Similarity=0.289 Sum_probs=38.1
Q ss_pred cCCCeEEEEEeecCc-CCCeEEEEeCCeeeccCCcEEEeeeceEEEecCCCCCCeEEE--EEEEeCCeeEEEEEEEEE
Q psy11143 335 PAGSSVEIPCKPDGE-PLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYR--CTASNLLGEDVAEGYLTV 409 (940)
Q Consensus 335 ~~G~~vtL~C~v~g~-P~p~i~W~k~g~~i~~~~~~~i~~~~sL~I~~v~~~D~G~Yt--C~A~N~~G~~~~s~~L~V 409 (940)
..+..+.|.....+. ....+.|...+........ . ...-...|.|+ ..+.|..|+.+....+.|
T Consensus 12 ~~~~~v~f~~~~~~~~~~~~~~W~fgdg~~~~~~~--------~---~~~y~~~G~y~v~l~v~n~~g~~~~~~~i~v 78 (79)
T smart00089 12 VAGESVTFTATSSDDGSIVSYTWDFGDGTSSTGPT--------V---THTYTKPGTYTVTLTVTNAVGSASATVTVVV 78 (79)
T ss_pred CCCCEEEEEEECCCCCCeEEEEEEeCCCCccCCCC--------E---EEEeCCCcEEEEEEEEEcCCCcEEEEEEEEE
Confidence 367889999887652 3448888775542221111 1 11223577775 567888886666665554
No 443
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=26.75 E-value=1.3e+02 Score=25.31 Aligned_cols=52 Identities=25% Similarity=0.408 Sum_probs=27.5
Q ss_pred EecCCeEEEEEEeeccCCCeEEEEE---C--CEeecCCCCe-----EEEeeceEEEEcccccCCCe
Q psy11143 57 YSTGSTSRITCLVEGHPLPQMTWFH---D--GNSLDSDDHV-----TYEHDGFVLVLNGVRESDAG 112 (940)
Q Consensus 57 V~eGesv~L~C~v~g~P~p~V~W~k---d--g~~I~~~~~~-----~~~~~gs~L~I~~v~~~DsG 112 (940)
|..|+.++|. |.+...|+||+ + ...+-..... .+.-++..|+|-+|...++|
T Consensus 2 v~~G~N~TL~----Gp~~~~V~Wy~~~~~~~~~~lC~g~~~~~~~l~~tCn~qNLTLinVt~~~~G 63 (63)
T PF02440_consen 2 VTVGSNVTLV----GPPDGPVTWYKFHSDGDFKKLCNGNKTKHPELNHTCNGQNLTLINVTKTYNG 63 (63)
T ss_pred EeEcCcEEEe----CCCCCceEEEEecCCCCccccCCCCCccccceEeEecCCeEEEEEecccccC
Confidence 4567776664 44545799983 1 2333322222 23344445666666665554
No 444
>PF13119 DUF3973: Domain of unknown function (DUF3973)
Probab=26.75 E-value=23 Score=26.35 Aligned_cols=15 Identities=60% Similarity=1.285 Sum_probs=11.9
Q ss_pred cccccCCCcCCCcCCCCCCCCCCCCcccc
Q psy11143 696 KPIYENGFSTPVAPILSSPMAGNIDPFVG 724 (940)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (940)
.-+++||| +||||+|
T Consensus 18 ~~iF~ngf--------------YIdPflg 32 (41)
T PF13119_consen 18 DKIFKNGF--------------YIDPFLG 32 (41)
T ss_pred hhhhhCce--------------eeccccc
Confidence 45788888 7998877
No 445
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=23.32 E-value=4.5e+02 Score=22.11 Aligned_cols=63 Identities=16% Similarity=0.251 Sum_probs=34.7
Q ss_pred ecCCeEEEEEEeec-cCCCeEEEEECCEeecCCCCeEEEeeceEEEEcccccCCCeEEEE--EEEeCCCceEEEEEEE
Q psy11143 58 STGSTSRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNC--VAQNSEGSAESVAMIR 132 (940)
Q Consensus 58 ~eGesv~L~C~v~g-~P~p~V~W~kdg~~I~~~~~~~~~~~gs~L~I~~v~~~DsG~YtC--~a~n~~g~~~~~~~L~ 132 (940)
..|+.+.|.....+ .....+.|...+........ ........|.|+- .+.|..|.......+.
T Consensus 12 ~~~~~v~f~~~~~~~~~~~~~~W~fgdg~~~~~~~------------~~~~y~~~G~y~v~l~v~n~~g~~~~~~~i~ 77 (79)
T smart00089 12 VAGESVTFTATSSDDGSIVSYTWDFGDGTSSTGPT------------VTHTYTKPGTYTVTLTVTNAVGSASATVTVV 77 (79)
T ss_pred CCCCEEEEEEECCCCCCeEEEEEEeCCCCccCCCC------------EEEEeCCCcEEEEEEEEEcCCCcEEEEEEEE
Confidence 37889999988765 34558889765442211111 1223456788854 4456666333333333
No 446
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=23.01 E-value=1.5e+02 Score=24.64 Aligned_cols=29 Identities=17% Similarity=0.178 Sum_probs=21.6
Q ss_pred EEEecCCeEEEEEEeeccCCCeEEEEECC
Q psy11143 55 TTYSTGSTSRITCLVEGHPLPQMTWFHDG 83 (940)
Q Consensus 55 ~~V~eGesv~L~C~v~g~P~p~V~W~kdg 83 (940)
..+..|+.+.|...........+.|..++
T Consensus 6 ~~~~~g~~v~f~~~~~~g~~~~y~W~fgd 34 (69)
T PF00801_consen 6 TYVPTGQPVTFTASSSDGSPVTYSWDFGD 34 (69)
T ss_dssp SCEBTTSEEEEEETTTTSSECEEEEE-SS
T ss_pred CEEcCCCEEEEEEEccCCCCeEEEEEECC
Confidence 34778999999999843445589999888
No 447
>PRK13610 photosystem II reaction center protein Psb28; Provisional
Probab=22.45 E-value=28 Score=32.31 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=33.5
Q ss_pred ccccceeccccCCCCCCcchhhhhhhhhhhcccCCc----ccccCCCCCChhHHhHhh
Q psy11143 795 PFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDR----FWYENPSTFKPAQLTQIK 848 (940)
Q Consensus 795 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~~~~~~~~~~~~~ 848 (940)
-|+-|+.|..+|+.|+ .|-|+|.. |+|++|..|......+|-
T Consensus 11 QF~~Gi~E~~vp~VrL------------tRsrdG~tG~A~f~F~~p~~l~~~~~~~It 56 (113)
T PRK13610 11 QFVKGENEKDQPEIRL------------FRNLDGKKGKAVYKFYKPKTITLTNYKSVQ 56 (113)
T ss_pred EEecCCCCCcCCceEE------------EEccCCCccEEEEEECCchhccccccccee
Confidence 4788999999999998 78888886 889999998764444443
No 448
>PHA03112 IL-18 binding protein; Provisional
Probab=21.85 E-value=2.7e+02 Score=27.32 Aligned_cols=26 Identities=12% Similarity=0.239 Sum_probs=20.1
Q ss_pred ecCCeEEEEEEeecc-CC-CeEEEEECC
Q psy11143 58 STGSTSRITCLVEGH-PL-PQMTWFHDG 83 (940)
Q Consensus 58 ~eGesv~L~C~v~g~-P~-p~V~W~kdg 83 (940)
.+|+++.|+|.+-++ |. .-+.|.+++
T Consensus 36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 36 KETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred CCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 569999999999765 54 357799765
No 449
>PRK13612 photosystem II reaction center protein Psb28; Provisional
Probab=20.28 E-value=35 Score=31.82 Aligned_cols=41 Identities=32% Similarity=0.574 Sum_probs=32.5
Q ss_pred ccccceeccccCCCCCCcchhhhhhhhhhhcccCCc----ccccCCCCCChhHHhHh
Q psy11143 795 PFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDR----FWYENPSTFKPAQLTQI 847 (940)
Q Consensus 795 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~~~~~~~~~~~~ 847 (940)
-|+-|+.|..+|..++ .|-|+|.. |+|++|..|......+|
T Consensus 7 QF~~Gi~E~~ip~VrL------------tRsrdg~~g~a~f~F~~p~al~~~~~~~i 51 (113)
T PRK13612 7 QFSRGVDEPVVPDIRL------------TRSRDGRTGQATFYFEQPQALAPETTGEI 51 (113)
T ss_pred EEecCCCCCcCCceEE------------EEccCCCeeEEEEEECCccccCccccCce
Confidence 4678899999999998 78888886 88999999876443343
Done!