RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11143
(940 letters)
>gnl|CDD|188658 cd09826, peroxidasin_like, Animal heme peroxidase domain of
peroxidasin and related proteins. Peroxidasin is a
secreted heme peroxidase which is involved in hydrogen
peroxide metabolism and peroxidative reactions in the
cardiovascular system. The domain co-occurs with
extracellular matrix domains and may play a role in the
formation of the extracellular matrix.
Length = 440
Score = 204 bits (520), Expect = 2e-57
Identities = 71/116 (61%), Positives = 88/116 (75%)
Query: 516 DLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAVSLDL 575
L L KAFF+P+RLV+EGG+DPLLRG + AK + P + LN ELT+KLF H V+LDL
Sbjct: 232 HLPLHKAFFAPYRLVNEGGIDPLLRGLFATAAKDRVPDQLLNTELTEKLFEMAHEVALDL 291
Query: 576 AAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHPGF 631
AA+NIQRGRDHG+P YN +R++C L A TFEDL EI + VR+KL+RLYGHPG
Sbjct: 292 AALNIQRGRDHGLPGYNDYRKFCNLSVAETFEDLKNEIKNDDVREKLKRLYGHPGN 347
Score = 145 bits (368), Expect = 3e-37
Identities = 54/76 (71%), Positives = 63/76 (82%)
Query: 791 GNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQA 850
GNID FVG ILED + G RVGPT+ CLL +QF+R+RDGDRFWYENP F PAQLTQIK+
Sbjct: 346 GNIDLFVGGILEDLLPGARVGPTLACLLAEQFRRLRDGDRFWYENPGVFSPAQLTQIKKT 405
Query: 851 SLARVICDSGDRLTEV 866
SLARV+CD+GD +T V
Sbjct: 406 SLARVLCDNGDNITRV 421
Score = 71.2 bits (175), Expect = 9e-13
Identities = 26/38 (68%), Positives = 31/38 (81%)
Query: 717 GNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDG 754
GNID FVG ILED + G RVGPT+ CLL +QF+R+RDG
Sbjct: 346 GNIDLFVGGILEDLLPGARVGPTLACLLAEQFRRLRDG 383
>gnl|CDD|188657 cd09825, thyroid_peroxidase, Thyroid peroxidase (TPO). TPO is a
member of the animal heme peroxidase family, which is
expressed in the thyroid and involved in the processing
of iodine and iodine compounds. Specifically, TPO
oxidizes iodide via hydrogen peroxide to form active
iodine, which is then, for example, incorporated into
the tyrosine residues of thyroglobulin to yield mono-
and di-iodotyrosines.
Length = 565
Score = 162 bits (413), Expect = 3e-42
Identities = 66/114 (57%), Positives = 84/114 (73%)
Query: 517 LSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAVSLDLA 576
L+L AFFSPWRLV EGG+DP++RG I PAK P + +N+ELT+KLF ++ +LDLA
Sbjct: 348 LALHDAFFSPWRLVREGGLDPVIRGLIGGPAKLVTPDDLMNEELTEKLFVLSNSSTLDLA 407
Query: 577 AMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHPG 630
++N+QRGRDHG+P YN WRE+CGLPR T DLA I D+ V DK+ LY HP
Sbjct: 408 SLNLQRGRDHGLPGYNDWREFCGLPRLATPADLATAIADQAVADKILDLYKHPD 461
Score = 97.5 bits (243), Expect = 7e-21
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 791 GNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQA 850
NID ++G + ED + G R GP CL+ Q K +RDGDRFW+EN + F AQ ++++
Sbjct: 461 DNIDVWLGGLAEDFLPGARTGPLFACLIGKQMKALRDGDRFWWENSNVFTDAQRRELRKH 520
Query: 851 SLARVICDSGDRLTEV 866
SL+RVICD+ LT V
Sbjct: 521 SLSRVICDNTG-LTRV 535
Score = 68.6 bits (168), Expect = 8e-12
Identities = 26/64 (40%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 874 PTTSITPDPVITHMVMQWGQFLDHDLDHAIPATSLESWEG-IDCKKSCAFSPPCFPMEVP 932
+T++TPD + +HM+ WGQ++DHD+D + S + G DCK +C PCFP+++P
Sbjct: 50 SSTAVTPDDLYSHMLTVWGQYIDHDIDFTPQSVSRTMFIGSTDCKMTCENQNPCFPIQLP 109
Query: 933 HDDP 936
+DP
Sbjct: 110 SEDP 113
Score = 48.6 bits (116), Expect = 1e-05
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 717 GNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGN 755
NID ++G + ED + G R GP CL+ Q K +RDG+
Sbjct: 461 DNIDVWLGGLAEDFLPGARTGPLFACLIGKQMKALRDGD 499
Score = 37.0 bits (86), Expect = 0.043
Identities = 8/63 (12%), Positives = 19/63 (30%), Gaps = 1/63 (1%)
Query: 645 IANLSGCMEHQRTANCSDLCFHTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIY-ENGF 703
+ + C + +L I+G + + S R L+ + ++G
Sbjct: 124 FRSSAVCGTGDTSTLFGNLSLANPREQINGLTSFIDASTVYGSTLALARSLRDLSSDDGL 183
Query: 704 STP 706
Sbjct: 184 LRV 186
Score = 37.0 bits (86), Expect = 0.044
Identities = 15/23 (65%), Positives = 16/23 (69%)
Query: 685 GASLTGFRRLLKPIYENGFSTPV 707
GAS T R L PIYE+GFS PV
Sbjct: 1 GASNTPLARWLPPIYEDGFSEPV 23
>gnl|CDD|188655 cd09823, peroxinectin_like, peroxinectin_like animal heme
peroxidases. Peroxinectin is an arthropod protein that
plays a role in invertebrate immunity mechanisms.
Specifically, peroxinectins are secreted as
cell-adhesive and opsonic peroxidases. The immunity
mechanism appears to involve an interaction between
peroxinectin and a transmembrane receptor of the
integrin family. Human myeloperoxidase, which is
included in this wider family, has also been reported to
interact with integrins.
Length = 378
Score = 144 bits (366), Expect = 2e-37
Identities = 56/121 (46%), Positives = 71/121 (58%), Gaps = 4/121 (3%)
Query: 510 KMNLSEDLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELT-DKLFTTF 568
++L FF+P RL +EGG+DPLLRG T PA++ ELT F
Sbjct: 189 NYRPQGSVNLHDLFFNPDRLYEEGGLDPLLRGLATQPAQK--VDRFFTDELTTHFFFRGG 246
Query: 569 HAVSLDLAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGH 628
+ LDLAA+NIQRGRDHG+P YN +RE+CGLPRA TF+DL + KL+RLY
Sbjct: 247 NPFGLDLAALNIQRGRDHGLPGYNDYREFCGLPRATTFDDLLGIM-SPETIQKLRRLYKS 305
Query: 629 P 629
Sbjct: 306 V 306
Score = 120 bits (303), Expect = 3e-29
Identities = 40/70 (57%), Positives = 53/70 (75%), Gaps = 3/70 (4%)
Query: 792 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYEN---PSTFKPAQLTQIK 848
+ID +VG + E V GG VGPT C++ +QF+R+R GDRFWYEN PS+F PAQL +I+
Sbjct: 308 DIDLYVGGLSEKPVPGGLVGPTFACIIGEQFRRLRRGDRFWYENGGQPSSFTPAQLNEIR 367
Query: 849 QASLARVICD 858
+ SLAR+ICD
Sbjct: 368 KVSLARIICD 377
Score = 62.2 bits (152), Expect = 5e-10
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 718 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDG 754
+ID +VG + E V GG VGPT C++ +QF+R+R G
Sbjct: 308 DIDLYVGGLSEKPVPGGLVGPTFACIIGEQFRRLRRG 344
>gnl|CDD|188656 cd09824, myeloperoxidase_like, Myeloperoxidases, eosinophil
peroxidases, and lactoperoxidases. This well conserved
family of animal heme peroxidases contains members with
somewhat diverse functions. Myeloperoxidases are
lysosomal proteins found in azurophilic granules of
neutrophils and the lysosomes of monocytes. They are
involved in the formation of microbicidal agents upon
activation of activated neutrophils (neutrophils
undergoing respiratory bursts as a result of
phagocytosis), by catalyzing the conversion of hydrogen
peroxide to hypochlorous acid. As a heme protein,
myeloperoxidase is responsible for the greenish tint of
pus, which is rich in neutrophils. Eosinophil
peroxidases are haloperoxidases as well, preferring
bromide over chloride. Expressed by eosinophil
granulocytes, they are involved in attacking
multicellular parasites and play roles in various
inflammatory diseases such as asthma. The haloperoxidase
lactoperoxidase is secreted from mucosal glands and
provides antibacterial activity by oxidizing a variety
of substrates such as bromide or chloride in the
presence of hydrogen peroxide.
Length = 411
Score = 140 bits (355), Expect = 7e-36
Identities = 53/113 (46%), Positives = 74/113 (65%)
Query: 517 LSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAVSLDLA 576
+ L KAFF+ WR++ EGG+DP+LRG + +PAK + L EL ++LF + LDLA
Sbjct: 209 VPLHKAFFASWRIIREGGIDPILRGLMATPAKLNNQNQMLVDELRERLFQQTKRMGLDLA 268
Query: 577 AMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHP 629
A+N+QRGRDHG+P YNAWR +CGL + +LA + + + KL LYG P
Sbjct: 269 ALNLQRGRDHGLPGYNAWRRFCGLSQPQNLAELAAVLNNTVLARKLLDLYGTP 321
Score = 99.0 bits (247), Expect = 6e-22
Identities = 41/84 (48%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Query: 792 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQAS 851
NID ++G + E V GGRVGP + CL+ QF+RIRDGDRFW+ENP F Q ++ S
Sbjct: 323 NIDIWIGGVAEPLVPGGRVGPLLACLISRQFRRIRDGDRFWWENPGVFTEEQRESLRSVS 382
Query: 852 LARVICDSGDRLTEV-RVCFSPRP 874
L+R+ICD+ +T+V R F P
Sbjct: 383 LSRIICDN-TGITKVPRDPFQPNS 405
Score = 50.1 bits (120), Expect = 3e-06
Identities = 21/38 (55%), Positives = 28/38 (73%)
Query: 718 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGN 755
NID ++G + E V GGRVGP + CL+ QF+RIRDG+
Sbjct: 323 NIDIWIGGVAEPLVPGGRVGPLLACLISRQFRRIRDGD 360
>gnl|CDD|217366 pfam03098, An_peroxidase, Animal haem peroxidase.
Length = 521
Score = 140 bits (356), Expect = 4e-35
Identities = 56/117 (47%), Positives = 77/117 (65%), Gaps = 5/117 (4%)
Query: 515 EDLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTT--FHAVS 572
++ L FF+P R+++EG +DPLLRG + PA+ +L+ EL ++LF F
Sbjct: 327 PEIPLHDTFFNPSRILEEG-IDPLLRGLASQPAEL--LDNSLSDELRNRLFGPRNFPGSG 383
Query: 573 LDLAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHP 629
LDLAA+NIQRGRDHG+P YN +R +CGL A +FEDL EI D + +KL+ LYG P
Sbjct: 384 LDLAALNIQRGRDHGLPPYNEYRRFCGLKPATSFEDLTDEIGDEELAEKLKELYGDP 440
Score = 120 bits (302), Expect = 2e-28
Identities = 40/75 (53%), Positives = 53/75 (70%)
Query: 792 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQAS 851
+ID +VG + E V GG VGPT C++ +QF R+RDGDRFWYENP F QL +I++ +
Sbjct: 442 DIDLWVGGLAEKPVPGGLVGPTFACIIAEQFLRLRDGDRFWYENPGVFTGEQLEEIRKTT 501
Query: 852 LARVICDSGDRLTEV 866
LARVICD+ +T V
Sbjct: 502 LARVICDNTPGITRV 516
Score = 75.4 bits (186), Expect = 6e-14
Identities = 27/46 (58%), Positives = 35/46 (76%)
Query: 669 YRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPILSSP 714
YR+ DG+CNNLQ+P+WGA+ T F RLL P+YE+G STP + SP
Sbjct: 1 YRSADGSCNNLQNPLWGAAGTPFTRLLPPVYEDGVSTPRGSVNGSP 46
Score = 65.8 bits (161), Expect = 5e-11
Identities = 25/67 (37%), Positives = 30/67 (44%), Gaps = 11/67 (16%)
Query: 870 FSPRPTTSITPDPVITHMVMQWGQFLDHDLDHAIPATSLESWEGIDCKKSCAFSPPCFPM 929
R I PDP +T M+ QWGQF+DHDL + C P CFP+
Sbjct: 57 LLARKNGFIPPDPGLTLMLAQWGQFIDHDLTFTPHS---------PCCAD--NHPECFPI 105
Query: 930 EVPHDDP 936
VP DP
Sbjct: 106 PVPPGDP 112
Score = 62.3 bits (152), Expect = 7e-10
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 718 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPF 759
+ID +VG + E V GG VGPT C++ +QF R+RDG D F
Sbjct: 442 DIDLWVGGLAEKPVPGGLVGPTFACIIAEQFLRLRDG--DRF 481
>gnl|CDD|188654 cd09822, peroxinectin_like_bacterial, Uncharacterized family of
heme peroxidases, mostly bacterial. Animal heme
peroxidases are diverse family of enzymes which are not
restricted to animals. Members are also found in
metazoans, fungi, and plants, and also in bacteria -
like most members of this family of uncharacterized
proteins.
Length = 420
Score = 97.8 bits (244), Expect = 2e-21
Identities = 46/119 (38%), Positives = 63/119 (52%), Gaps = 14/119 (11%)
Query: 515 EDLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDK----LFTTFHA 570
L+L AFF+P ++E G+DPLLRG + A + ++ + D LF A
Sbjct: 231 TSLALRDAFFNP-DELEENGIDPLLRGLASQVA------QEIDTFIVDDVRNFLFGPPGA 283
Query: 571 VSLDLAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHP 629
DLAA+NIQRGRDHG+P YN RE GLP +F D+ D + +L +YG
Sbjct: 284 GGFDLAALNIQRGRDHGLPSYNQLREALGLPAVTSFSDITS---DPDLAARLASVYGDV 339
Score = 78.1 bits (193), Expect = 5e-15
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 792 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQAS 851
ID +VG + ED V+GG VG T ++ DQF R+RDGDRF+YEN ++ I+ +
Sbjct: 341 QIDLWVGGLAEDHVNGGLVGETFSTIIADQFTRLRDGDRFFYENDD-LLLDEIADIENTT 399
Query: 852 LARVI 856
LA VI
Sbjct: 400 LADVI 404
Score = 52.3 bits (126), Expect = 8e-07
Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 718 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPF 759
ID +VG + ED V+GG VG T ++ DQF R+RDG D F
Sbjct: 341 QIDLWVGGLAEDHVNGGLVGETFSTIIADQFTRLRDG--DRF 380
Score = 36.5 bits (85), Expect = 0.060
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 873 RPTTSITPDPVITHMVMQWGQFLDHDLDHA 902
T SI ++ WGQFLDHD+D
Sbjct: 14 DQTESIPNSRGLSDWFWVWGQFLDHDIDLT 43
>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain.
Length = 90
Score = 86.2 bits (214), Expect = 2e-20
Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRL 195
P+ KP D+ G S C G+P P +SW KD K+ G +L +
Sbjct: 1 PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTI 60
Query: 196 YNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
N+ P D G Y C A+N GE A LTV
Sbjct: 61 SNVQPDDEGKYTCVATNSAGEAEASAELTV 90
Score = 86.2 bits (214), Expect = 2e-20
Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRL 379
P+ KP D+ G S C G+P P +SW KD K+ G +L +
Sbjct: 1 PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTI 60
Query: 380 YNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
N+ P D G Y C A+N GE A LTV
Sbjct: 61 SNVQPDDEGKYTCVATNSAGEAEASAELTV 90
Score = 83.8 bits (208), Expect = 2e-19
Identities = 37/86 (43%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH--VTYEHDGFVLVL 103
P F Q+P G ++R TC V G P P ++WF DG L S D VTYE + L +
Sbjct: 1 PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTI 60
Query: 104 NGVRESDAGVYNCVAQNSEGSAESVA 129
+ V+ D G Y CVA NS G AE+ A
Sbjct: 61 SNVQPDDEGKYTCVATNSAGEAEASA 86
Score = 83.8 bits (208), Expect = 2e-19
Identities = 37/86 (43%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH--VTYEHDGFVLVL 287
P F Q+P G ++R TC V G P P ++WF DG L S D VTYE + L +
Sbjct: 1 PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTI 60
Query: 288 NGVRESDAGVYNCVAQNSEGSAESVA 313
+ V+ D G Y CVA NS G AE+ A
Sbjct: 61 SNVQPDDEGKYTCVATNSAGEAEASA 86
Score = 37.6 bits (88), Expect = 0.002
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 7 STELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV 42
+ L IS VQ + G+Y+CVA N AG +TV
Sbjct: 55 TYTLTISNVQPDDEGKYTCVATNSAGEAEASAELTV 90
>gnl|CDD|188647 cd05396, An_peroxidase_like, Animal heme peroxidases and related
proteins. A diverse family of enzymes, which includes
prostaglandin G/H synthase, thyroid peroxidase,
myeloperoxidase, linoleate diol synthase,
lactoperoxidase, peroxinectin, peroxidasin, and others.
Despite its name, this family is not restricted to
metazoans: members are found in fungi, plants, and
bacteria as well.
Length = 370
Score = 89.4 bits (222), Expect = 7e-19
Identities = 49/128 (38%), Positives = 65/128 (50%), Gaps = 8/128 (6%)
Query: 503 KHIQAGVKMNLSEDLSLGKAFFSPWRLV-DEGGVDPLLRGFITSPAKRKRPTENLNKELT 561
I + D+ L FF+ R + + G+DPLLRGF+ PA N +
Sbjct: 180 DRIDENGQPKEIPDVPLKDFFFNTSRSILSDTGLDPLLRGFLRQPAGLIDQ----NVDDV 235
Query: 562 DKLFTTFHAVSLDLAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDK 621
LF V LDLAA+NIQRGRD G+P YN R + GL +F+D+ +TD + K
Sbjct: 236 MFLFGPLEGVGLDLAALNIQRGRDLGLPSYNEVRRFIGLKPPTSFQDI---LTDPELAKK 292
Query: 622 LQRLYGHP 629
L LYG P
Sbjct: 293 LAELYGDP 300
Score = 68.6 bits (168), Expect = 4e-12
Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 16/168 (9%)
Query: 700 ENGFSTPVAPILSSPMAGNIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPF 759
+ P+ AG ID V + G + L +R RD + +
Sbjct: 209 SDTGLDPLLRGFLRQPAGLIDQNV---DDVMFLFGPLEGVGLDLAALNIQRGRDLGLPSY 265
Query: 760 VGAILEDQVDGGRVGPTMRCLLIDQFKRIRDG--------NIDPFVGAILEDQVDGGRVG 811
E + G PT ++ + + ++D +VG +LE +V R+G
Sbjct: 266 N----EVRRFIGLKPPTSFQDILTDPELAKKLAELYGDPDDVDLWVGGLLEKKVPPARLG 321
Query: 812 PTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQI-KQASLARVICD 858
+ ++++QFKR+ DGDRF+Y N + F + ++ K SLA +IC
Sbjct: 322 ELLATIILEQFKRLVDGDRFYYVNYNPFGKSGKEELEKLISLADIICL 369
>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like. IG domains that cannot
be classified into one of IGv1, IGc1, IGc2, IG.
Length = 85
Score = 68.3 bits (167), Expect = 3e-14
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 52 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL---DSDDHVTYEHDGFVLVLNGVRE 108
P S T G + ++C G P P++TW+ G L V+ L ++ V
Sbjct: 1 PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60
Query: 109 SDAGVYNCVAQNSEGSAESVAMIRI 133
D+G Y C A NS GSA S + +
Sbjct: 61 EDSGTYTCAATNSSGSASSGTTLTV 85
Score = 68.3 bits (167), Expect = 3e-14
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 236 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL---DSDDHVTYEHDGFVLVLNGVRE 292
P S T G + ++C G P P++TW+ G L V+ L ++ V
Sbjct: 1 PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60
Query: 293 SDAGVYNCVAQNSEGSAESVAMIRI 317
D+G Y C A NS GSA S + +
Sbjct: 61 EDSGTYTCAATNSSGSASSGTTLTV 85
Score = 67.9 bits (166), Expect = 6e-14
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 147 DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFV-EDRNHKIHRTG---SLRLYNIGPQD 202
+ G SV + C+ G P P ++W K + + E + R+G +L + N+ P+D
Sbjct: 3 SVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPED 62
Query: 203 SGLYRCTASNLLGEDVAEGYLTV 225
SG Y C A+N G + LTV
Sbjct: 63 SGTYTCAATNSSGSASSGTTLTV 85
Score = 67.9 bits (166), Expect = 6e-14
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 331 DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFV-EDRNHKIHRTG---SLRLYNIGPQD 386
+ G SV + C+ G P P ++W K + + E + R+G +L + N+ P+D
Sbjct: 3 SVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPED 62
Query: 387 SGLYRCTASNLLGEDVAEGYLTV 409
SG Y C A+N G + LTV
Sbjct: 63 SGTYTCAATNSSGSASSGTTLTV 85
Score = 42.5 bits (100), Expect = 4e-05
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV 42
S++ L IS V E G Y+C A N +G +TV
Sbjct: 49 STSTLTISNVTPEDSGTYTCAATNSSGSASSGTTLTV 85
>gnl|CDD|214652 smart00409, IG, Immunoglobulin.
Length = 85
Score = 68.3 bits (167), Expect = 3e-14
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 52 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL---DSDDHVTYEHDGFVLVLNGVRE 108
P S T G + ++C G P P++TW+ G L V+ L ++ V
Sbjct: 1 PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60
Query: 109 SDAGVYNCVAQNSEGSAESVAMIRI 133
D+G Y C A NS GSA S + +
Sbjct: 61 EDSGTYTCAATNSSGSASSGTTLTV 85
Score = 68.3 bits (167), Expect = 3e-14
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 236 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL---DSDDHVTYEHDGFVLVLNGVRE 292
P S T G + ++C G P P++TW+ G L V+ L ++ V
Sbjct: 1 PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60
Query: 293 SDAGVYNCVAQNSEGSAESVAMIRI 317
D+G Y C A NS GSA S + +
Sbjct: 61 EDSGTYTCAATNSSGSASSGTTLTV 85
Score = 67.9 bits (166), Expect = 6e-14
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 147 DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFV-EDRNHKIHRTG---SLRLYNIGPQD 202
+ G SV + C+ G P P ++W K + + E + R+G +L + N+ P+D
Sbjct: 3 SVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPED 62
Query: 203 SGLYRCTASNLLGEDVAEGYLTV 225
SG Y C A+N G + LTV
Sbjct: 63 SGTYTCAATNSSGSASSGTTLTV 85
Score = 67.9 bits (166), Expect = 6e-14
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 331 DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFV-EDRNHKIHRTG---SLRLYNIGPQD 386
+ G SV + C+ G P P ++W K + + E + R+G +L + N+ P+D
Sbjct: 3 SVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPED 62
Query: 387 SGLYRCTASNLLGEDVAEGYLTV 409
SG Y C A+N G + LTV
Sbjct: 63 SGTYTCAATNSSGSASSGTTLTV 85
Score = 42.5 bits (100), Expect = 4e-05
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV 42
S++ L IS V E G Y+C A N +G +TV
Sbjct: 49 STSTLTISNVTPEDSGTYTCAATNSSGSASSGTTLTV 85
>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain. Ig: immunoglobulin (Ig) domain
found in the Ig superfamily. The Ig superfamily is a
heterogenous group of proteins, built on a common fold
comprised of a sandwich of two beta sheets. Members of
this group are components of immunoglobulin, neuroglia,
cell surface glycoproteins, such as, T-cell receptors,
CD2, CD4, CD8, and membrane glycoproteins, such as,
butyrophilin and chondroitin sulfate proteoglycan core
protein. A predominant feature of most Ig domains is a
disulfide bridge connecting the two beta-sheets with a
tryptophan residue packed against the disulfide bond.
Length = 74
Score = 62.9 bits (152), Expect = 3e-12
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Query: 64 RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG------FVLVLNGVRESDAGVYNCV 117
+TCL G P P +TW +G L S L ++ V D+G Y CV
Sbjct: 2 TLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCV 61
Query: 118 AQNSEGSAESVA 129
A NS G+ +
Sbjct: 62 ASNSAGTVSASV 73
Score = 62.9 bits (152), Expect = 3e-12
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Query: 248 RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG------FVLVLNGVRESDAGVYNCV 301
+TCL G P P +TW +G L S L ++ V D+G Y CV
Sbjct: 2 TLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCV 61
Query: 302 AQNSEGSAESVA 313
A NS G+ +
Sbjct: 62 ASNSAGTVSASV 73
Score = 57.9 bits (139), Expect = 1e-10
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 156 VEIPCKPDGEPLPRISWSKDEAEFVED-------RNHKIHRTGSLRLYNIGPQDSGLYRC 208
V + C G P P I+W K+ + +L + N+ +DSG Y C
Sbjct: 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60
Query: 209 TASNLLGEDVAE 220
ASN G A
Sbjct: 61 VASNSAGTVSAS 72
Score = 57.9 bits (139), Expect = 1e-10
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 340 VEIPCKPDGEPLPRISWSKDEAEFVED-------RNHKIHRTGSLRLYNIGPQDSGLYRC 392
V + C G P P I+W K+ + +L + N+ +DSG Y C
Sbjct: 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60
Query: 393 TASNLLGEDVAE 404
ASN G A
Sbjct: 61 VASNSAGTVSAS 72
Score = 37.1 bits (85), Expect = 0.003
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 5 RSSTELVISGVQREHGGRYSCVAGNPAGV 33
S+ L IS V E G Y+CVA N AG
Sbjct: 40 SGSSTLTISNVTLEDSGTYTCVASNSAGT 68
>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin.
Ig5_Contactin_like: Fifth Ig domain of contactins.
Contactins are neural cell adhesion molecules and are
comprised of six Ig domains followed by four fibronectin
type III(FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. The first four Ig domains
form the intermolecular binding fragment, which arranges
as a compact U-shaped module via contacts between Ig
domains 1 and 4, and between Ig domains 2 and 3.
Contactin-2 (TAG-1, axonin-1) may play a part in the
neuronal processes of neurite outgrowth, axon guidance
and fasciculation, and neuronal migration. This group
also includes contactin-1 and contactin-5. The different
contactins show different expression patterns in the
central nervous system. During development and in
adulthood, contactin-2 is transiently expressed in
subsets of central and peripheral neurons. Contactin-5
is expressed specifically in the rat postnatal nervous
system, peaking at about 3 weeks postnatal, and a lack
of contactin-5 (NB-2) results in an impairment of
neuronal act ivity in the rat auditory system.
Contactin-5 is highly expressed in the adult human brain
in the occipital lobe and in the amygdala. Contactin-1
is differentially expressed in tumor tissues and may,
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 73
Score = 62.5 bits (152), Expect = 3e-12
Identities = 28/73 (38%), Positives = 33/73 (45%)
Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 212
G V I CKP P P ISWSK I GSL + N+ D G Y C A N
Sbjct: 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAEN 60
Query: 213 LLGEDVAEGYLTV 225
G+ + G L+V
Sbjct: 61 FFGKANSTGSLSV 73
Score = 62.5 bits (152), Expect = 3e-12
Identities = 28/73 (38%), Positives = 33/73 (45%)
Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 396
G V I CKP P P ISWSK I GSL + N+ D G Y C A N
Sbjct: 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAEN 60
Query: 397 LLGEDVAEGYLTV 409
G+ + G L+V
Sbjct: 61 FFGKANSTGSLSV 73
Score = 43.2 bits (102), Expect = 2e-05
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 65 ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 124
I C + P P ++W L + + DG + +LN V +SD G Y C A+N G
Sbjct: 6 IECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILN-VTKSDEGKYTCFAENFFGK 64
Query: 125 AESVA 129
A S
Sbjct: 65 ANSTG 69
Score = 43.2 bits (102), Expect = 2e-05
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 249 ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 308
I C + P P ++W L + + DG + +LN V +SD G Y C A+N G
Sbjct: 6 IECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILN-VTKSDEGKYTCFAENFFGK 64
Query: 309 AESVA 313
A S
Sbjct: 65 ANSTG 69
>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type.
Length = 63
Score = 61.7 bits (150), Expect = 5e-12
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 119
G + +TC EG+P+P +TW DG L + G L + V D+G+Y CVA+
Sbjct: 2 GQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFV--ASGSTLTIKSVSLEDSGLYTCVAE 59
Query: 120 NSEG 123
NS G
Sbjct: 60 NSAG 63
Score = 61.7 bits (150), Expect = 5e-12
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 303
G + +TC EG+P+P +TW DG L + G L + V D+G+Y CVA+
Sbjct: 2 GQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFV--ASGSTLTIKSVSLEDSGLYTCVAE 59
Query: 304 NSEG 307
NS G
Sbjct: 60 NSAG 63
Score = 61.3 bits (149), Expect = 6e-12
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 212
G SV + C +G P+P I+W KD E +L + ++ +DSGLY C A N
Sbjct: 2 GQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVASG-STLTIKSVSLEDSGLYTCVAEN 60
Query: 213 LLG 215
G
Sbjct: 61 SAG 63
Score = 61.3 bits (149), Expect = 6e-12
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 396
G SV + C +G P+P I+W KD E +L + ++ +DSGLY C A N
Sbjct: 2 GQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVASG-STLTIKSVSLEDSGLYTCVAEN 60
Query: 397 LLG 399
G
Sbjct: 61 SAG 63
Score = 36.2 bits (84), Expect = 0.004
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAG 32
S + L I V E G Y+CVA N AG
Sbjct: 37 SGSTLTIKSVSLEDSGLYTCVAENSAG 63
>gnl|CDD|188652 cd09820, dual_peroxidase_like, Dual oxidase and related animal heme
peroxidases. Animal heme peroxidases of the
dual-oxidase like subfamily play vital roles in the
innate mucosal immunity of gut epithelia. They provide
reactive oxygen species which help control infection.
Length = 558
Score = 69.3 bits (170), Expect = 5e-12
Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 560 LTDKLFTTFHAVSLDLAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREI--TDRR 617
L D LF DL A+NIQRGRDHG+P+YN RE GLP T+ D+ ++ D
Sbjct: 370 LRDYLFGPLEFSRRDLMALNIQRGRDHGLPDYNTAREAFGLPPRTTWSDINPDLFKKDPE 429
Query: 618 VRDKLQRLYG 627
+ ++L LYG
Sbjct: 430 LLERLAELYG 439
Score = 64.6 bits (158), Expect = 1e-10
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 781 LIDQFKRIRDGNI---DPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPS 837
L+++ + ++ D +VG +LE GG G R +++DQF+R+RDGDRFW+EN
Sbjct: 430 LLERLAELYGNDLSKLDLYVGGMLES--KGGGPGELFRAIILDQFQRLRDGDRFWFENVK 487
Query: 838 T--FKPAQLTQIKQASLARVI 856
F ++ +I+ +L VI
Sbjct: 488 NGLFTAEEIEEIRNTTLRDVI 508
Score = 38.8 bits (91), Expect = 0.013
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 718 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDG 754
+D +VG +LE GG G R +++DQF+R+RDG
Sbjct: 444 KLDLYVGGMLES--KGGGPGELFRAIILDQFQRLRDG 478
Score = 32.7 bits (75), Expect = 0.94
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 673 DGTCNNLQHPMWGASLTGFRRLLKPIYENG 702
DG NNL HP WGA+ + R L Y +G
Sbjct: 2 DGWYNNLAHPEWGAADSRLTRRLPAHYSDG 31
>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin.
Ig3_Contactin_like: Third Ig domain of contactins.
Contactins are neural cell adhesion molecules and are
comprised of six Ig domains followed by four fibronectin
type III(FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. The first four Ig domains
form the intermolecular binding fragment, which arranges
as a compact U-shaped module via contacts between Ig
domains 1 and 4, and between Ig domains 2 and 3.
Contactin-2 (TAG-1, axonin-1) may play a part in the
neuronal processes of neurite outgrowth, axon guidance
and fasciculation, and neuronal migration. This group
also includes contactin-1 and contactin-5. The different
contactins show different expression patterns in the
central nervous system. During development and in
adulthood, contactin-2 is transiently expressed in
subsets of central and peripheral neurons. Contactin-5
is expressed specifically in the rat postnatal nervous
system, peaking at about 3 weeks postnatal, and a lack
of contactin-5 (NB-2) results in an impairment of
neuronal act ivity in the rat auditory system.
Contactin-5 is highly expressed in the adult human brain
in the occipital lobe and in the amygdala. Contactin-1
is differentially expressed in tumor tissues and may,
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 88
Score = 61.7 bits (150), Expect = 9e-12
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 142 VVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSK-DEAEFVEDRNHKIHRTGSLRLYNIGP 200
VV P D A G +V + C G P+P+I W K D + L++ NI
Sbjct: 5 VVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMP--SSAEISMSGAVLKIPNIQF 62
Query: 201 QDSGLYRCTASNLLGEDVAEGYLTV 225
+D G Y C A N+ G+D +G + V
Sbjct: 63 EDEGTYECEAENIKGKDTHQGRIYV 87
Score = 61.7 bits (150), Expect = 9e-12
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 326 VVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSK-DEAEFVEDRNHKIHRTGSLRLYNIGP 384
VV P D A G +V + C G P+P+I W K D + L++ NI
Sbjct: 5 VVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMP--SSAEISMSGAVLKIPNIQF 62
Query: 385 QDSGLYRCTASNLLGEDVAEGYLTV 409
+D G Y C A N+ G+D +G + V
Sbjct: 63 EDEGTYECEAENIKGKDTHQGRIYV 87
Score = 45.5 bits (108), Expect = 4e-06
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLN 104
P I + P T G + C G+P+PQ+ W S+ S G VL +
Sbjct: 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPS--SAEISMSGAVLKIP 58
Query: 105 GVRESDAGVYNCVAQNSEG 123
++ D G Y C A+N +G
Sbjct: 59 NIQFEDEGTYECEAENIKG 77
Score = 45.5 bits (108), Expect = 4e-06
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLN 288
P I + P T G + C G+P+PQ+ W S+ S G VL +
Sbjct: 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPS--SAEISMSGAVLKIP 58
Query: 289 GVRESDAGVYNCVAQNSEG 307
++ D G Y C A+N +G
Sbjct: 59 NIQFEDEGTYECEAENIKG 77
>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors. Ig2_Robo: domain similar to the
second immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors. Robo receptors play a role in
the development of the central nervous system (CNS), and
are receptors of Slit protein. Slit is a repellant
secreted by the neural cells in the midline. Slit acts
through Robo to prevent most neurons from crossing the
midline from either side. Three mammalian Robo homologs
(robo1, -2, and -3), and three mammalian Slit homologs
(Slit-1,-2, -3), have been identified. Commissural
axons, which cross the midline, express low levels of
Robo; longitudinal axons, which avoid the midline,
express high levels of Robo. robo1, -2, and -3 are
expressed by commissural neurons in the vertebrate
spinal cord and Slits 1, -2, -3 are expressed at the
ventral midline. Robo-3 is a divergent member of the
Robo family which instead of being a positive regulator
of slit responsiveness, antagonizes slit responsiveness
in precrossing axons. The Slit-Robo interaction is
mediated by the second leucine-rich repeat (LRR) domain
of Slit and the two N-terminal Ig domains of Robo, Ig1
and Ig2. The primary Robo binding site for Slit2 has
been shown by surface plasmon resonance experiments and
mutational analysis to be is the Ig1 domain, while the
Ig2 domain has been proposed to harbor a weak secondary
binding site.
Length = 86
Score = 61.3 bits (149), Expect = 9e-12
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 50 QRPVSTTYSTGSTSRITCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRE 108
P T + G + + C GHP P ++W DG L+ D+ D L++ R+
Sbjct: 1 VEPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARK 60
Query: 109 SDAGVYNCVAQNSEGSAESVA 129
SD G Y CVA N G ES A
Sbjct: 61 SDEGTYKCVATNMVGERESAA 81
Score = 61.3 bits (149), Expect = 9e-12
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 234 QRPVSTTYSTGSTSRITCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRE 292
P T + G + + C GHP P ++W DG L+ D+ D L++ R+
Sbjct: 1 VEPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARK 60
Query: 293 SDAGVYNCVAQNSEGSAESVA 313
SD G Y CVA N G ES A
Sbjct: 61 SDEGTYKCVATNMVGERESAA 81
Score = 56.2 bits (136), Expect = 7e-10
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 143 VKPFDMRAPAGSSVEIPCKPD-GEPLPRISWSKDEAEFVEDRNH-KIHRTGSLRLYNIGP 200
V+P D + G + C P G P P +SW KD D +I G+L +
Sbjct: 1 VEPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARK 60
Query: 201 QDSGLYRCTASNLLGEDVAE-GYLTV 225
D G Y+C A+N++GE + L+V
Sbjct: 61 SDEGTYKCVATNMVGERESAAARLSV 86
Score = 56.2 bits (136), Expect = 7e-10
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 327 VKPFDMRAPAGSSVEIPCKPD-GEPLPRISWSKDEAEFVEDRNH-KIHRTGSLRLYNIGP 384
V+P D + G + C P G P P +SW KD D +I G+L +
Sbjct: 1 VEPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARK 60
Query: 385 QDSGLYRCTASNLLGEDVAE-GYLTV 409
D G Y+C A+N++GE + L+V
Sbjct: 61 SDEGTYKCVATNMVGERESAAARLSV 86
Score = 28.5 bits (64), Expect = 3.7
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGV 33
L+I+ ++ G Y CVA N G
Sbjct: 53 LLIAEARKSDEGTYKCVATNMVGE 76
>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors and similar proteins. Ig1_Robo:
domain similar to the first immunoglobulin (Ig)-like
domain in Robo (roundabout) receptors. Robo receptors
play a role in the development of the central nervous
system (CNS), and are receptors of Slit protein. Slit is
a repellant secreted by the neural cells in the midline.
Slit acts through Robo to prevent most neurons from
crossing the midline from either side. Three mammalian
Robo homologs (robo1, -2, and -3), and three mammalian
Slit homologs (Slit-1,-2, -3), have been identified.
Commissural axons, which cross the midline, express low
levels of Robo; longitudinal axons, which avoid the
midline, express high levels of Robo. robo1, -2, and -3
are expressed by commissural neurons in the vertebrate
spinal cord and Slits 1, -2, -3 are expressed at the
ventral midline. Robo-3 is a divergent member of the
Robo family which instead of being a positive regulator
of slit responsiveness, antagonizes slit responsiveness
in precrossing axons. The Slit-Robo interaction is
mediated by the second leucine-rich repeat (LRR) domain
of Slit and the two N-terminal Ig domains of Robo, Ig1
and Ig2. The primary Robo binding site for Slit2 has
been shown by surface plasmon resonance experiments and
mutational analysis to be is the Ig1 domain, while the
Ig2 domain has been proposed to harbor a weak secondary
binding site.
Length = 100
Score = 58.3 bits (141), Expect = 2e-10
Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH-----DG- 98
PP ++ P S G + + C EG P P + W +G L++D H G
Sbjct: 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGS 60
Query: 99 ---FVLVLNGVRESDAGVYNCVAQNSEGSAES 127
+V SD GVY CVA NS G A S
Sbjct: 61 LFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVS 92
Score = 58.3 bits (141), Expect = 2e-10
Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH-----DG- 282
PP ++ P S G + + C EG P P + W +G L++D H G
Sbjct: 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGS 60
Query: 283 ---FVLVLNGVRESDAGVYNCVAQNSEGSAES 311
+V SD GVY CVA NS G A S
Sbjct: 61 LFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVS 92
Score = 51.0 bits (122), Expect = 6e-08
Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH-KIHRT----GS 192
PR+V P D+ G + CK +G P P I W K+ D++ + HR GS
Sbjct: 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGS 60
Query: 193 LRLYNI-----GPQDSGLYRCTASNLLGEDV 218
L + G D G+Y C A N LGE V
Sbjct: 61 LFFLRVVHGRKGRSDEGVYVCVAHNSLGEAV 91
Score = 51.0 bits (122), Expect = 6e-08
Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH-KIHRT----GS 376
PR+V P D+ G + CK +G P P I W K+ D++ + HR GS
Sbjct: 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGS 60
Query: 377 LRLYNI-----GPQDSGLYRCTASNLLGEDV 402
L + G D G+Y C A N LGE V
Sbjct: 61 LFFLRVVHGRKGRSDEGVYVCVAHNSLGEAV 91
>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of
peroxidasin. Ig3_Peroxidasin: the third immunoglobulin
(Ig)-like domain in peroxidasin. Peroxidasin has a
peroxidase domain and interacting extracellular motifs
containing four Ig-like domains. It has been suggested
that peroxidasin is secreted and has functions related
to the stabilization of the extracellular matrix. It may
play a part in various other important processes such as
removal and destruction of cells which have undergone
programmed cell death, and protection of the organism
against non-self.
Length = 74
Score = 57.3 bits (138), Expect = 2e-10
Identities = 25/73 (34%), Positives = 39/73 (53%)
Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 212
G +V+ C+ G P P I+W+K ++ DR H + +G+LR+ + D G Y C A N
Sbjct: 2 GQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVN 61
Query: 213 LLGEDVAEGYLTV 225
++G LTV
Sbjct: 62 IVGSQRTVAQLTV 74
Score = 57.3 bits (138), Expect = 2e-10
Identities = 25/73 (34%), Positives = 39/73 (53%)
Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 396
G +V+ C+ G P P I+W+K ++ DR H + +G+LR+ + D G Y C A N
Sbjct: 2 GQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVN 61
Query: 397 LLGEDVAEGYLTV 409
++G LTV
Sbjct: 62 IVGSQRTVAQLTV 74
Score = 34.5 bits (79), Expect = 0.021
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 119
G T C +G+P P + W G+ L D G L ++ V D G Y C A
Sbjct: 2 GQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSG-TLRISRVALHDQGQYECQAV 60
Query: 120 NSEGSAESVAMIRI 133
N GS +VA + +
Sbjct: 61 NIVGSQRTVAQLTV 74
Score = 34.5 bits (79), Expect = 0.021
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 303
G T C +G+P P + W G+ L D G L ++ V D G Y C A
Sbjct: 2 GQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSG-TLRISRVALHDQGQYECQAV 60
Query: 304 NSEGSAESVAMIRI 317
N GS +VA + +
Sbjct: 61 NIVGSQRTVAQLTV 74
Score = 29.9 bits (67), Expect = 0.96
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 3 DRR----SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV 42
DRR SS L IS V G+Y C A N G R +TV
Sbjct: 31 DRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74
>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors. Ig3_Robo: domain similar to the
third immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors. Robo receptors play a role in
the development of the central nervous system (CNS), and
are receptors of Slit protein. Slit is a repellant
secreted by the neural cells in the midline. Slit acts
through Robo to prevent most neurons from crossing the
midline from either side. Three mammalian Robo homologs
(robo1, -2, and -3), and three mammalian Slit homologs
(Slit-1,-2, -3), have been identified. Commissural
axons, which cross the midline, express low levels of
Robo; longitudinal axons, which avoid the midline,
express high levels of Robo. robo1, -2, and -3 are
expressed by commissural neurons in the vertebrate
spinal cord and Slits 1, -2, -3 are expressed at the
ventral midline. Robo-3 is a divergent member of the
Robo family which instead of being a positive regulator
of slit responsiveness, antagonizes slit responsiveness
in precrossing axons. The Slit-Robo interaction is
mediated by the second leucine-rich repeat (LRR) domain
of Slit and the two N-terminal Ig domains of Robo, Ig1
and Ig2. The primary Robo binding site for Slit2 has
been shown by surface plasmon resonance experiments and
mutational analysis to be is the Ig1 domain, while the
Ig2 domain has been proposed to harbor a weak secondary
binding site.
Length = 69
Score = 56.6 bits (137), Expect = 3e-10
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 156 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLG 215
VE C+ G+P+P + W K++ E + R I SL++ N+ D G Y C A N++G
Sbjct: 1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAE-ILDDKSLKIRNVTAGDEGSYTCEAENMVG 59
Query: 216 EDVAEGYLTV 225
+ A LTV
Sbjct: 60 KIEASASLTV 69
Score = 56.6 bits (137), Expect = 3e-10
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 340 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLG 399
VE C+ G+P+P + W K++ E + R I SL++ N+ D G Y C A N++G
Sbjct: 1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAE-ILDDKSLKIRNVTAGDEGSYTCEAENMVG 59
Query: 400 EDVAEGYLTV 409
+ A LTV
Sbjct: 60 KIEASASLTV 69
Score = 41.2 bits (97), Expect = 7e-05
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 67 CLVEGHPLPQMTWF-HDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA 125
C V G P+P + W DG + + L + V D G Y C A+N G
Sbjct: 5 CEVGGDPVPTVLWRKEDGELPKGRAEILDDKS---LKIRNVTAGDEGSYTCEAENMVGKI 61
Query: 126 ESVAMIRI 133
E+ A + +
Sbjct: 62 EASASLTV 69
Score = 41.2 bits (97), Expect = 7e-05
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 251 CLVEGHPLPQMTWF-HDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA 309
C V G P+P + W DG + + L + V D G Y C A+N G
Sbjct: 5 CEVGGDPVPTVLWRKEDGELPKGRAEILDDKS---LKIRNVTAGDEGSYTCEAENMVGKI 61
Query: 310 ESVAMIRI 317
E+ A + +
Sbjct: 62 EASASLTV 69
>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of
peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin
(Ig)-like domain in peroxidasin. Peroxidasin has a
peroxidase domain and interacting extracellular motifs
containing four Ig-like domains. It has been suggested
that peroxidasin is secreted, and has functions related
to the stabilization of the extracellular matrix. It may
play a part in various other important processes such as
removal and destruction of cells, which have undergone
programmed cell death, and protection of the organism
against non-self.
Length = 69
Score = 55.3 bits (133), Expect = 9e-10
Identities = 23/60 (38%), Positives = 32/60 (53%)
Query: 156 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLG 215
V+IPC G+P P I+W+KD + E I G L + ++G D G Y C A N +G
Sbjct: 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIG 60
Score = 55.3 bits (133), Expect = 9e-10
Identities = 23/60 (38%), Positives = 32/60 (53%)
Query: 340 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLG 399
V+IPC G+P P I+W+KD + E I G L + ++G D G Y C A N +G
Sbjct: 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIG 60
Score = 46.0 bits (109), Expect = 2e-06
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 64 RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG 123
+I C +G P P +TW DG + +G+ L + V +D G Y CVA+N+ G
Sbjct: 2 QIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGY-LAIRDVGVADQGRYECVARNTIG 60
Query: 124 SAESVAMI 131
A SV+M+
Sbjct: 61 YA-SVSMV 67
Score = 46.0 bits (109), Expect = 2e-06
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 248 RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG 307
+I C +G P P +TW DG + +G+ L + V +D G Y CVA+N+ G
Sbjct: 2 QIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGY-LAIRDVGVADQGRYECVARNTIG 60
Query: 308 SAESVAMI 315
A SV+M+
Sbjct: 61 YA-SVSMV 67
>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain
of human titin C terminus and similar proteins.
Ig5_Titin_like: domain similar to the M5, fifth
immunoglobulin (Ig)-like domain from the human titin C
terminus. Titin (also called connectin) is a fibrous
sarcomeric protein specifically found in vertebrate
striated muscle. Titin is gigantic; depending on isoform
composition it ranges from 2970 to 3700 kDa, and is of a
length that spans half a sarcomere. Titin largely
consists of multiple repeats of Ig-like and fibronectin
type 3 (FN-III)-like domains. Titin connects the ends of
myosin thick filaments to Z disks and extends along the
thick filament to the H zone, and appears to function
similar to an elastic band, keeping the myosin filaments
centered in the sarcomere during muscle contraction or
stretching.
Length = 92
Score = 54.3 bits (130), Expect = 4e-09
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH--VTYEHDGFVLV 102
P + +P S T S G ++R +C V+G P P +TW +G + S +T
Sbjct: 3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFE 62
Query: 103 LNGVRESDAGVYNCVAQNSEGSAES 127
++ V+ SD G Y V +NSEG E+
Sbjct: 63 ISKVQMSDEGNYTVVVENSEGKQEA 87
Score = 54.3 bits (130), Expect = 4e-09
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH--VTYEHDGFVLV 286
P + +P S T S G ++R +C V+G P P +TW +G + S +T
Sbjct: 3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFE 62
Query: 287 LNGVRESDAGVYNCVAQNSEGSAES 311
++ V+ SD G Y V +NSEG E+
Sbjct: 63 ISKVQMSDEGNYTVVVENSEGKQEA 87
Score = 45.4 bits (107), Expect = 5e-06
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT---GSLR 194
++ KP + G S C DGEP P ++W ++ V + H+I T +
Sbjct: 3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFE 62
Query: 195 LYNIGPQDSGLYRCTASNLLGEDVAEGYLT 224
+ + D G Y N G+ A+ LT
Sbjct: 63 ISKVQMSDEGNYTVVVENSEGKQEAQFTLT 92
Score = 45.4 bits (107), Expect = 5e-06
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT---GSLR 378
++ KP + G S C DGEP P ++W ++ V + H+I T +
Sbjct: 3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFE 62
Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLT 408
+ + D G Y N G+ A+ LT
Sbjct: 63 ISKVQMSDEGNYTVVVENSEGKQEAQFTLT 92
>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1.
Ig3_Contactin-1: Third Ig domain of the neural cell
adhesion molecule contactin-1. Contactins are comprised
of six Ig domains followed by four fibronectin type III
(FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. Contactin-1 is
differentially expressed in tumor tissues and may
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 88
Score = 54.3 bits (130), Expect = 4e-09
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS-LRLYN 197
+ VK D A G +V + C G P+P I W K +I +G+ L+++N
Sbjct: 2 ADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPM--PATAEISMSGAVLKIFN 59
Query: 198 IGPQDSGLYRCTASNLLGEDVAEGYLTV 225
I P+D G Y C A N+ G+D + + V
Sbjct: 60 IQPEDEGTYECEAENIKGKDKHQARVYV 87
Score = 54.3 bits (130), Expect = 4e-09
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS-LRLYN 381
+ VK D A G +V + C G P+P I W K +I +G+ L+++N
Sbjct: 2 ADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPM--PATAEISMSGAVLKIFN 59
Query: 382 IGPQDSGLYRCTASNLLGEDVAEGYLTV 409
I P+D G Y C A N+ G+D + + V
Sbjct: 60 IQPEDEGTYECEAENIKGKDKHQARVYV 87
Score = 33.1 bits (75), Expect = 0.094
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 119
G + C G+P+P + W + + ++ G VL + ++ D G Y C A+
Sbjct: 16 GQNVTLECFALGNPVPVIRWRKILEPMPATAEISMS--GAVLKIFNIQPEDEGTYECEAE 73
Query: 120 NSEG 123
N +G
Sbjct: 74 NIKG 77
Score = 33.1 bits (75), Expect = 0.094
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 303
G + C G+P+P + W + + ++ G VL + ++ D G Y C A+
Sbjct: 16 GQNVTLECFALGNPVPVIRWRKILEPMPATAEISMS--GAVLKIFNIQPEDEGTYECEAE 73
Query: 304 NSEG 307
N +G
Sbjct: 74 NIKG 77
>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of
fibroblast growth factor (FGF) receptor_like-1(FGFRL1).
Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain
of fibroblast growth factor (FGF)
receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal
peptide, three extracellular Ig-like modules, a
transmembrane segment, and a short intracellular domain.
FGFRL1 is expressed preferentially in skeletal tissues.
Similar to FGF receptors, the expressed protein
interacts specifically with heparin and with FGF2.
FGFRL1 does not have a protein tyrosine kinase domain at
its C terminus; neither does its cytoplasmic domain
appear to interact with a signaling partner. It has been
suggested that FGFRL1 may not have any direct signaling
function, but instead acts as a decoy receptor trapping
FGFs and preventing them from binding other receptors.
Length = 82
Score = 53.7 bits (129), Expect = 5e-09
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 151 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG-SLRLYNIGPQDSGLYRCT 209
P GSSV + C G P P I+W KD + + +L L N+ P+DSG Y C
Sbjct: 7 PVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCH 66
Query: 210 ASNLLGE 216
SN GE
Sbjct: 67 VSNRAGE 73
Score = 53.7 bits (129), Expect = 5e-09
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 335 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG-SLRLYNIGPQDSGLYRCT 393
P GSSV + C G P P I+W KD + + +L L N+ P+DSG Y C
Sbjct: 7 PVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCH 66
Query: 394 ASNLLGE 400
SN GE
Sbjct: 67 VSNRAGE 73
Score = 49.1 bits (117), Expect = 2e-07
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 49 IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRE 108
I RPV GS+ R+ C+ G+P P +TW D L + + L L ++
Sbjct: 4 IARPV------GSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKP 57
Query: 109 SDAGVYNCVAQNSEG 123
D+G Y C N G
Sbjct: 58 EDSGKYTCHVSNRAG 72
Score = 49.1 bits (117), Expect = 2e-07
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 233 IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRE 292
I RPV GS+ R+ C+ G+P P +TW D L + + L L ++
Sbjct: 4 IARPV------GSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKP 57
Query: 293 SDAGVYNCVAQNSEG 307
D+G Y C N G
Sbjct: 58 EDSGKYTCHVSNRAG 72
>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain. This domain contains
immunoglobulin-like domains.
Length = 80
Score = 53.6 bits (129), Expect = 5e-09
Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 51 RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESD 110
P T G +TC G+P P TW+ DG L S +GF N V D
Sbjct: 5 TPSPTVVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSSS------QNGF-FTPN-VSAED 56
Query: 111 AGVYNCVAQNSEGS 124
+G Y CVA N G
Sbjct: 57 SGTYTCVASNGGGG 70
Score = 53.6 bits (129), Expect = 5e-09
Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 235 RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESD 294
P T G +TC G+P P TW+ DG L S +GF N V D
Sbjct: 5 TPSPTVVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSSS------QNGF-FTPN-VSAED 56
Query: 295 AGVYNCVAQNSEGS 308
+G Y CVA N G
Sbjct: 57 SGTYTCVASNGGGG 70
Score = 45.1 bits (107), Expect = 4e-06
Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 9/75 (12%)
Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN 197
P L P + G V + C G P P +W KD +N N
Sbjct: 1 KPVLTPSPTVVFE--GEDVTLTCSAPGNPPPNYTWYKDGVPLSSSQNGFFTP-------N 51
Query: 198 IGPQDSGLYRCTASN 212
+ +DSG Y C ASN
Sbjct: 52 VSAEDSGTYTCVASN 66
Score = 45.1 bits (107), Expect = 4e-06
Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 9/75 (12%)
Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN 381
P L P + G V + C G P P +W KD +N N
Sbjct: 1 KPVLTPSPTVVFE--GEDVTLTCSAPGNPPPNYTWYKDGVPLSSSQNGFFTP-------N 51
Query: 382 IGPQDSGLYRCTASN 396
+ +DSG Y C ASN
Sbjct: 52 VSAEDSGTYTCVASN 66
Score = 30.1 bits (68), Expect = 0.95
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGV 33
S V E G Y+CVA N G
Sbjct: 43 SQNGFFTPNVSAEDSGTYTCVASNGGGG 70
>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of
fibroblast growth factor (FGF) receptor and similar
proteins. Ig2_FGFR_like: domain similar to the second
immunoglobulin (Ig)-like domain of fibroblast growth
factor (FGF) receptor. FGF receptors bind FGF signaling
polypeptides. FGFs participate in multiple processes
such as morphogenesis, development, and angiogenesis.
FGFs bind to four FGF receptor tyrosine kinases (FGFR1,
-2, -3, -4). Receptor diversity is controlled by
alternative splicing producing splice variants with
different ligand binding characteristics and different
expression patterns. FGFRs have an extracellular region
comprised of three Ig-like domains, a single
transmembrane helix, and an intracellular tyrosine
kinase domain. Ligand binding and specificity reside in
the Ig-like domains 2 and 3, and the linker region that
connects these two. FGFR activation and signaling depend
on FGF-induced dimerization, a process involving cell
surface heparin or heparin sulfate proteoglycans. This
group also contains fibroblast growth factor (FGF)
receptor_like-1(FGFRL1). FGFRL1 does not have a protein
tyrosine kinase domain at its C terminus; neither does
its cytoplasmic domain appear to interact with a
signaling partner. It has been suggested that FGFRL1 may
not have any direct signaling function, but instead acts
as a decoy receptor trapping FGFs and preventing them
from binding other receptors.
Length = 85
Score = 53.5 bits (129), Expect = 6e-09
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 151 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI----HRTGSLRLYNIGPQDSGLY 206
PAGS+V + C G P P I+W KD F ++ + +L L ++ P DSG Y
Sbjct: 7 PAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKY 66
Query: 207 RCTASNLLGE 216
C N G
Sbjct: 67 TCIVENKYGS 76
Score = 53.5 bits (129), Expect = 6e-09
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 335 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI----HRTGSLRLYNIGPQDSGLY 390
PAGS+V + C G P P I+W KD F ++ + +L L ++ P DSG Y
Sbjct: 7 PAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKY 66
Query: 391 RCTASNLLGE 400
C N G
Sbjct: 67 TCIVENKYGS 76
Score = 50.8 bits (122), Expect = 6e-08
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 49 IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNG 105
P GST R+ C G+P P +TW DG + + + L+L
Sbjct: 4 HAVPA------GSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILES 57
Query: 106 VRESDAGVYNCVAQNSEGS 124
V SD+G Y C+ +N GS
Sbjct: 58 VVPSDSGKYTCIVENKYGS 76
Score = 50.8 bits (122), Expect = 6e-08
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 233 IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNG 289
P GST R+ C G+P P +TW DG + + + L+L
Sbjct: 4 HAVPA------GSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILES 57
Query: 290 VRESDAGVYNCVAQNSEGS 308
V SD+G Y C+ +N GS
Sbjct: 58 VVPSDSGKYTCIVENKYGS 76
>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain
of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule),
and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth
immunoglobulin (Ig)-like domain of L1, Ng-CAM
(Neuron-glia CAM cell adhesion molecule), and NrCAM
(Ng-CAM-related). These proteins belong to the L1
subfamily of cell adhesion molecules (CAMs) and are
comprised of an extracellular region having six Ig-like
domains and five fibronectin type III domains, a
transmembrane region and an intracellular domain. These
molecules are primarily expressed in the nervous system.
L1 is associated with an X-linked recessive disorder,
X-linked hydrocephalus, MASA syndrome, or spastic
paraplegia type 1, that involves abnormalities of axonal
growth.
Length = 76
Score = 52.0 bits (125), Expect = 2e-08
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 153 GSSVEIPCKPDGEPLPRISWS---KDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCT 209
G + + C+ +G P P I+W E D ++ G+L L N+ P D+ +Y+C
Sbjct: 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDG-GTLILSNVQPNDTAVYQCN 59
Query: 210 ASNLLGEDVAEGYLTV 225
ASN+ G +A ++ V
Sbjct: 60 ASNVHGYLLANAFVHV 75
Score = 52.0 bits (125), Expect = 2e-08
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 337 GSSVEIPCKPDGEPLPRISWS---KDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCT 393
G + + C+ +G P P I+W E D ++ G+L L N+ P D+ +Y+C
Sbjct: 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDG-GTLILSNVQPNDTAVYQCN 59
Query: 394 ASNLLGEDVAEGYLTV 409
ASN+ G +A ++ V
Sbjct: 60 ASNVHGYLLANAFVHV 75
Score = 51.6 bits (124), Expect = 2e-08
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 60 GSTSRITCLVEGHPLPQMTWFHDGNSLD-SDDHVTYEHDGFVLVLNGVRESDAGVYNCVA 118
G T R+ C EG P P +TW +G ++ DG L+L+ V+ +D VY C A
Sbjct: 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNA 60
Query: 119 QNSEG 123
N G
Sbjct: 61 SNVHG 65
Score = 51.6 bits (124), Expect = 2e-08
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLD-SDDHVTYEHDGFVLVLNGVRESDAGVYNCVA 302
G T R+ C EG P P +TW +G ++ DG L+L+ V+ +D VY C A
Sbjct: 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNA 60
Query: 303 QNSEG 307
N G
Sbjct: 61 SNVHG 65
>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily.
Ig_1: subgroup of the immunoglobulin (Ig) domain found
in the Ig superfamily. The Ig superfamily is a
heterogenous group of proteins, built on a common fold
comprised of a sandwich of two beta sheets. Members of
the Ig superfamily are components of immunoglobulin,
neuroglia, cell surface glycoproteins, such as T-cell
receptors, CD2, CD4, CD8, and membrane glycoproteins,
such as butyrophilin and chondroitin sulfate
proteoglycan core protein. A predominant feature of most
Ig domains is a disulfide bridge connecting the two
beta-sheets with a tryptophan residue packed against the
disulfide bond.
Length = 75
Score = 51.5 bits (123), Expect = 2e-08
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 157 EIPCKPDGEPLPRISWSKDEA-EFVEDRNHKIHRTGSLRLY---NIGPQDSGLYRCTASN 212
+ C G P P+I+W KD +F R ++H ++ ++ +D+G+Y CTA N
Sbjct: 2 RLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQN 61
Query: 213 LLGEDVAEGYLTV 225
G A LTV
Sbjct: 62 TAGSISANATLTV 74
Score = 51.5 bits (123), Expect = 2e-08
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 341 EIPCKPDGEPLPRISWSKDEA-EFVEDRNHKIHRTGSLRLY---NIGPQDSGLYRCTASN 396
+ C G P P+I+W KD +F R ++H ++ ++ +D+G+Y CTA N
Sbjct: 2 RLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQN 61
Query: 397 LLGEDVAEGYLTV 409
G A LTV
Sbjct: 62 TAGSISANATLTV 74
Score = 51.1 bits (122), Expect = 3e-08
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 63 SRITCLVEGHPLPQMTWFHDGN-----SLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCV 117
+R+ C GHP PQ+ W DG + + HV E D F +V V+ D GVY+C
Sbjct: 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIV--DVKIEDTGVYSCT 58
Query: 118 AQNSEGSAESVAMIRI 133
AQN+ GS + A + +
Sbjct: 59 AQNTAGSISANATLTV 74
Score = 51.1 bits (122), Expect = 3e-08
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 247 SRITCLVEGHPLPQMTWFHDGN-----SLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCV 301
+R+ C GHP PQ+ W DG + + HV E D F +V V+ D GVY+C
Sbjct: 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIV--DVKIEDTGVYSCT 58
Query: 302 AQNSEGSAESVAMIRI 317
AQN+ GS + A + +
Sbjct: 59 AQNTAGSISANATLTV 74
>gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1.
Ig5_Contactin-1: fifth Ig domain of the neural cell
adhesion molecule contactin-1. Contactins are comprised
of six Ig domains followed by four fibronectin type III
(FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. Contactin-1 is
differentially expressed in tumor tissues and may
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 73
Score = 51.2 bits (122), Expect = 3e-08
Identities = 29/73 (39%), Positives = 35/73 (47%)
Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 212
G V I CKP P P+ SWSK V + I GSL + NI D G Y C A N
Sbjct: 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAEN 60
Query: 213 LLGEDVAEGYLTV 225
G+ + G L+V
Sbjct: 61 NRGKANSTGVLSV 73
Score = 51.2 bits (122), Expect = 3e-08
Identities = 29/73 (39%), Positives = 35/73 (47%)
Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 396
G V I CKP P P+ SWSK V + I GSL + NI D G Y C A N
Sbjct: 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAEN 60
Query: 397 LLGEDVAEGYLTV 409
G+ + G L+V
Sbjct: 61 NRGKANSTGVLSV 73
Score = 37.7 bits (87), Expect = 0.002
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 65 ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 124
I C + P P+ +W L ++ ++ DG + +LN + + D G Y C A+N+ G
Sbjct: 6 IECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILN-ITKLDEGSYTCFAENNRGK 64
Query: 125 AESVAMIRI 133
A S ++ +
Sbjct: 65 ANSTGVLSV 73
Score = 37.7 bits (87), Expect = 0.002
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 249 ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 308
I C + P P+ +W L ++ ++ DG + +LN + + D G Y C A+N+ G
Sbjct: 6 IECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILN-ITKLDEGSYTCFAENNRGK 64
Query: 309 AESVAMIRI 317
A S ++ +
Sbjct: 65 ANSTGVLSV 73
>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain. Members of the
immunoglobulin superfamily are found in hundreds of
proteins of different functions. Examples include
antibodies, the giant muscle kinase titin and receptor
tyrosine kinases. Immunoglobulin-like domains may be
involved in protein-protein and protein-ligand
interactions. The Pfam alignments do not include the
first and last strand of the immunoglobulin-like domain.
Length = 62
Score = 50.2 bits (120), Expect = 4e-08
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG---FVLVLNGVRESDAGVYNC 116
GS+ +TC V G P +TWF +G L+ V + + L ++ V D+G Y C
Sbjct: 1 GSSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTC 60
Query: 117 VA 118
V
Sbjct: 61 VV 62
Score = 50.2 bits (120), Expect = 4e-08
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG---FVLVLNGVRESDAGVYNC 300
GS+ +TC V G P +TWF +G L+ V + + L ++ V D+G Y C
Sbjct: 1 GSSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTC 60
Query: 301 VA 302
V
Sbjct: 61 VV 62
Score = 41.8 bits (98), Expect = 5e-05
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Query: 153 GSSVEIPCKPDGEPLPRISWSKD------EAEFVEDRNHKIHRTGSLRLYNIGPQDSGLY 206
GSSV + C G P ++W K+ D N +L + N+ P+DSG Y
Sbjct: 1 GSSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSS--ITLTISNVTPEDSGTY 58
Query: 207 RCTA 210
C
Sbjct: 59 TCVV 62
Score = 41.8 bits (98), Expect = 5e-05
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Query: 337 GSSVEIPCKPDGEPLPRISWSKD------EAEFVEDRNHKIHRTGSLRLYNIGPQDSGLY 390
GSSV + C G P ++W K+ D N +L + N+ P+DSG Y
Sbjct: 1 GSSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSS--ITLTISNVTPEDSGTY 58
Query: 391 RCTA 394
C
Sbjct: 59 TCVV 62
>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of
Neural Cell Adhesion Molecule NCAM-1 (NCAM).
Ig3_NCAM-1_like: domain similar to the third
immunoglobulin (Ig)-like domain of Neural Cell Adhesion
Molecule NCAM-1 (NCAM). NCAM plays important roles in
the development and regeneration of the central nervous
system, in synaptogenesis and neural migration. NCAM
mediates cell-cell and cell-substratum recognition and
adhesion via homophilic (NCAM-NCAM), and heterophilic
(NCAM-non-NCAM), interactions. NCAM is expressed as
three major isoforms having different intracellular
extensions. The extracellular portion of NCAM has five
N-terminal Ig-like domains and two fibronectin type III
domains. The double zipper adhesion complex model for
NCAM homophilic binding involves Ig1, Ig2, and Ig3. By
this model, Ig1,and Ig2 mediate dimerization of NCAM
molecules situated on the same cell surface (cis
interactions), and Ig3 domains mediate interactions
between NCAM molecules expressed on the surface of
opposing cells (trans interactions), through binding to
the Ig1 and Ig2 domains. The adhesive ability of NCAM is
modulated by the addition of polysialic acid chains to
the fifth Ig-like domain.
Length = 95
Score = 51.1 bits (122), Expect = 5e-08
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 50 QRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDS-DDHVTYEHDGFVLVLNGVRE 108
Q V+ T + G + + C +G P P MTW DG ++S ++ ++ DG + + V +
Sbjct: 8 QSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDK 67
Query: 109 SDAGVYNCVAQNSEGSAESVAMIRI 133
D Y C+A+N G E+ +++
Sbjct: 68 LDEAEYTCIAENKAGEQEAEIHLKV 92
Score = 51.1 bits (122), Expect = 5e-08
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 234 QRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDS-DDHVTYEHDGFVLVLNGVRE 292
Q V+ T + G + + C +G P P MTW DG ++S ++ ++ DG + + V +
Sbjct: 8 QSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDK 67
Query: 293 SDAGVYNCVAQNSEGSAESVAMIRI 317
D Y C+A+N G E+ +++
Sbjct: 68 LDEAEYTCIAENKAGEQEAEIHLKV 92
Score = 47.6 bits (113), Expect = 1e-06
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 150 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI--HRTGS-LRLYNIGPQDSGLY 206
A G SV + C DG P P ++W+KD E +E K + GS + + ++ D Y
Sbjct: 15 ANLGQSVTLACDADGFPEPTMTWTKD-GEPIESGEEKYSFNEDGSEMTILDVDKLDEAEY 73
Query: 207 RCTASNLLGEDVAEGYLTV 225
C A N GE AE +L V
Sbjct: 74 TCIAENKAGEQEAEIHLKV 92
Score = 47.6 bits (113), Expect = 1e-06
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 334 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI--HRTGS-LRLYNIGPQDSGLY 390
A G SV + C DG P P ++W+KD E +E K + GS + + ++ D Y
Sbjct: 15 ANLGQSVTLACDADGFPEPTMTWTKD-GEPIESGEEKYSFNEDGSEMTILDVDKLDEAEY 73
Query: 391 RCTASNLLGEDVAEGYLTV 409
C A N GE AE +L V
Sbjct: 74 TCIAENKAGEQEAEIHLKV 92
Score = 30.7 bits (69), Expect = 0.72
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 7 STELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNA 44
+E+ I V + Y+C+A N AG ++H+ V A
Sbjct: 57 GSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKVFA 94
>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin.
Ig1_Contactin: First Ig domain of contactins. Contactins
are neural cell adhesion molecules and are comprised of
six Ig domains followed by four fibronectin type
III(FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. The first four Ig domains
form the intermolecular binding fragment, which arranges
as a compact U-shaped module via contacts between Ig
domains 1 and 4, and between Ig domains 2 and 3.
Contactin-2 (TAG-1, axonin-1) may play a part in the
neuronal processes of neurite outgrowth, axon guidance
and fasciculation, and neuronal migration. This group
also includes contactin-1 and contactin-5. The different
contactins show different expression patterns in the
central nervous system. During development and in
adulthood, contactin-2 is transiently expressed in
subsets of central and peripheral neurons. Contactin-5
is expressed specifically in the rat postnatal nervous
system, peaking at about 3 weeks postnatal, and a lack
of contactin-5 (NB-2) results in an impairment of
neuronal activity in the rat auditory system.
Contactin-5 is highly expressed in the adult human brain
in the occipital lobe and in the amygdala. Contactin-1
is differentially expressed in tumor tissues and may,
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 91
Score = 50.9 bits (122), Expect = 5e-08
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 46 PIFIQRPVSTTYSTGSTSR---ITCLVEGHPLPQMTWFHDGNSLD--SDDHVTYEHDGFV 100
P+F ++P T + S + C G P P W +G +D D + G +
Sbjct: 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLV-GGNL 60
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAES 127
++ N + DAG Y C+A N G+ S
Sbjct: 61 VISNPSKAKDAGRYQCLASNIVGTVLS 87
Score = 50.9 bits (122), Expect = 5e-08
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 230 PIFIQRPVSTTYSTGSTSR---ITCLVEGHPLPQMTWFHDGNSLD--SDDHVTYEHDGFV 284
P+F ++P T + S + C G P P W +G +D D + G +
Sbjct: 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLV-GGNL 60
Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAES 311
++ N + DAG Y C+A N G+ S
Sbjct: 61 VISNPSKAKDAGRYQCLASNIVGTVLS 87
Score = 29.3 bits (66), Expect = 2.3
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 139 PRLVVKPFDMRAPAGSS---VEIPCKPDGEPLPRISWSKD--EAEFVEDRNHKIHRTGSL 193
P +P D P S V + C+ G P P W + E + D + + G+L
Sbjct: 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSL-VGGNL 60
Query: 194 RLYNIGP---QDSGLYRCTASNLLG 215
+ N P +D+G Y+C ASN++G
Sbjct: 61 VISN--PSKAKDAGRYQCLASNIVG 83
Score = 29.3 bits (66), Expect = 2.3
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 323 PRLVVKPFDMRAPAGSS---VEIPCKPDGEPLPRISWSKD--EAEFVEDRNHKIHRTGSL 377
P +P D P S V + C+ G P P W + E + D + + G+L
Sbjct: 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSL-VGGNL 60
Query: 378 RLYNIGP---QDSGLYRCTASNLLG 399
+ N P +D+G Y+C ASN++G
Sbjct: 61 VISN--PSKAKDAGRYQCLASNIVG 83
>gnl|CDD|143256 cd05848, Ig1_Contactin-5, First Ig domain of contactin-5.
Ig1_Contactin-5: First Ig domain of the neural cell
adhesion molecule contactin-5. Contactins are comprised
of six Ig domains followed by four fibronectin type III
(FnIII) domains, anchored to the membrane by
glycosylphosphatidylinositol. The different contactins
show different expression patterns in the central
nervous system. In rats, a lack of contactin-5 (NB-2)
results in an impairment of the neuronal activity in the
auditory system. Contactin-5 is expressed specifically
in the postnatal nervous system, peaking at about 3
weeks postnatal. Contactin-5 is highly expressed in the
adult human brain in the occipital lobe and in the
amygdala; lower levels of expression have been detected
in the corpus callosum, caudate nucleus, and spinal
cord.
Length = 94
Score = 50.7 bits (121), Expect = 6e-08
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 46 PIFIQRPVSTTYSTGSTSR---ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH-DGFVL 101
P+F+Q P + T S + + C G+P+P W +G +D++ Y DG ++
Sbjct: 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLI 61
Query: 102 VLNGVRESDAGVYNCVAQNSEGSAES 127
+ N D+G Y C+A NS GS S
Sbjct: 62 ISNPSEVKDSGRYQCLATNSIGSILS 87
Score = 50.7 bits (121), Expect = 6e-08
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 230 PIFIQRPVSTTYSTGSTSR---ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH-DGFVL 285
P+F+Q P + T S + + C G+P+P W +G +D++ Y DG ++
Sbjct: 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLI 61
Query: 286 VLNGVRESDAGVYNCVAQNSEGSAES 311
+ N D+G Y C+A NS GS S
Sbjct: 62 ISNPSEVKDSGRYQCLATNSIGSILS 87
Score = 31.8 bits (72), Expect = 0.31
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 139 PRLVVKPFDMRAPAGS---SVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT-GSLR 194
P V +P D P S V + C+ G P+P W ++ E + +++ G+L
Sbjct: 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLI 61
Query: 195 LYNIGP-QDSGLYRCTASNLLG 215
+ N +DSG Y+C A+N +G
Sbjct: 62 ISNPSEVKDSGRYQCLATNSIG 83
Score = 31.8 bits (72), Expect = 0.31
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 323 PRLVVKPFDMRAPAGS---SVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT-GSLR 378
P V +P D P S V + C+ G P+P W ++ E + +++ G+L
Sbjct: 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLI 61
Query: 379 LYNIGP-QDSGLYRCTASNLLG 399
+ N +DSG Y+C A+N +G
Sbjct: 62 ISNPSEVKDSGRYQCLATNSIG 83
>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of
Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar
proteins. Ig5_NCAM-1 like: domain similar to the fifth
immunoglobulin (Ig)-like domain of Neural Cell Adhesion
Molecule NCAM-1 (NCAM). NCAM plays important roles in
the development and regeneration of the central nervous
system, in synaptogenesis and neural migration. NCAM
mediates cell-cell and cell-substratum recognition and
adhesion via homophilic (NCAM-NCAM), and heterophilic
(NCAM-non-NCAM), interactions. NCAM is expressed as
three major isoforms having different intracellular
extensions. The extracellular portion of NCAM has five
N-terminal Ig-like domains and two fibronectin type III
domains. The double zipper adhesion complex model for
NCAM homophilic binding involves Ig1, Ig2, and Ig3. By
this model, Ig1 and Ig2 mediate dimerization of NCAM
molecules situated on the same cell surface (cis
interactions), and Ig3 domains mediate interactions
between NCAM molecules expressed on the surface of
opposing cells (trans interactions), through binding to
the Ig1 and Ig2 domains. The adhesive ability of NCAM is
modulated by the addition of polysialic acid chains to
the fifth Ig-like domain. Also included in this group is
NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2
is differentially expressed in the developing and mature
olfactory epithelium (OE).
Length = 96
Score = 51.0 bits (122), Expect = 6e-08
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEF----------VEDRNHKIHRTGSLRLYNIGPQD 202
+ + C+ +G+P+P I+W + F + R H R SL L ++ D
Sbjct: 16 LEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGH--ARVSSLTLKDVQLTD 73
Query: 203 SGLYRCTASNLLGEDVAEGYLTV 225
+G Y C ASN +G D YL V
Sbjct: 74 AGRYDCEASNRIGGDQQSMYLEV 96
Score = 51.0 bits (122), Expect = 6e-08
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEF----------VEDRNHKIHRTGSLRLYNIGPQD 386
+ + C+ +G+P+P I+W + F + R H R SL L ++ D
Sbjct: 16 LEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGH--ARVSSLTLKDVQLTD 73
Query: 387 SGLYRCTASNLLGEDVAEGYLTV 409
+G Y C ASN +G D YL V
Sbjct: 74 AGRYDCEASNRIGGDQQSMYLEV 96
Score = 42.1 bits (99), Expect = 9e-05
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 56 TYSTGSTSRITCLVEGHPLPQMTW------FHDGN-SLDSDDHVTYEHDGFVLVLNGVRE 108
T +TC EG P+P++TW F +G+ SLD V L L V+
Sbjct: 12 TAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQL 71
Query: 109 SDAGVYNCVAQNSEG 123
+DAG Y+C A N G
Sbjct: 72 TDAGRYDCEASNRIG 86
Score = 42.1 bits (99), Expect = 9e-05
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 240 TYSTGSTSRITCLVEGHPLPQMTW------FHDGN-SLDSDDHVTYEHDGFVLVLNGVRE 292
T +TC EG P+P++TW F +G+ SLD V L L V+
Sbjct: 12 TAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQL 71
Query: 293 SDAGVYNCVAQNSEG 307
+DAG Y+C A N G
Sbjct: 72 TDAGRYDCEASNRIG 86
>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of
the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like:
domain similar to the third immunoglobulin (Ig)-like
domain of the L1 cell adhesion molecule (CAM). L1
belongs to the L1 subfamily of cell adhesion molecules
(CAMs) and is comprised of an extracellular region
having six Ig-like domains and five fibronectin type III
domains, a transmembrane region and an intracellular
domain. L1 is primarily expressed in the nervous system
and is involved in its development and function. L1 is
associated with an X-linked recessive disorder, X-linked
hydrocephalus, MASA syndrome, or spastic paraplegia type
1, that involves abnormalities of axonal growth. This
group also contains the chicken neuron-glia cell
adhesion molecule, Ng-CAM and human neurofascin.
Length = 71
Score = 49.7 bits (119), Expect = 1e-07
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 67 CLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA 125
C+ EG P P+++W G L +D +E+ L ++ V E D G Y C A NS GSA
Sbjct: 5 CIAEGLPTPEISWIKIGGELPAD-RTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSA 62
Score = 49.7 bits (119), Expect = 1e-07
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 251 CLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA 309
C+ EG P P+++W G L +D +E+ L ++ V E D G Y C A NS GSA
Sbjct: 5 CIAEGLPTPEISWIKIGGELPAD-RTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSA 62
Score = 49.3 bits (118), Expect = 1e-07
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 340 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLG 399
+ + C +G P P ISW K E DR + +L++ N+ +D G YRCTASN LG
Sbjct: 1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLG 60
Query: 400 EDVAEGYLTVTGE 412
A ++VT E
Sbjct: 61 S--ARHTISVTVE 71
Score = 48.9 bits (117), Expect = 2e-07
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 156 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLG 215
+ + C +G P P ISW K E DR + +L++ N+ +D G YRCTASN LG
Sbjct: 1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLG 60
Query: 216 EDVAEGYLTVT 226
A ++VT
Sbjct: 61 S--ARHTISVT 69
Score = 35.8 bits (83), Expect = 0.008
Identities = 14/33 (42%), Positives = 15/33 (45%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV 42
L I V E G Y C A N G R + VTV
Sbjct: 38 LKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70
>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like
domain of a follistatin-like molecule encoded by the
Mahya gene and similar proteins. Ig2_Follistatin_like:
domain similar to the second immunoglobulin (Ig)-like
domain found in a follistatin-like molecule encoded by
the CNS-related Mahya gene. Mahya genes have been
retained in certain Bilaterian branches during
evolution. They are conserved in Hymenoptera and
Deuterostomes, but are absent from other metazoan
species such as fruit fly and nematode. Mahya proteins
are secretory, with a follistatin-like domain
(Kazal-type serine/threonine protease inhibitor domain
and EF-hand calcium-binding domain), two Ig-like
domains, and a novel C-terminal domain. Mahya may be
involved in learning and memory and in processing of
sensory information in Hymenoptera and vertebrates.
Follistatin is a secreted, multidomain protein that
binds activins with high affinity and antagonizes their
signaling.
Length = 76
Score = 49.1 bits (117), Expect = 2e-07
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 65 ITCLVEGHPLPQMTWFHDGNSLDSD--DHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE 122
+ C EG PLP++TW +G + +T +G L ++ VR D G Y C+A+N
Sbjct: 3 LRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEA 62
Query: 123 GSAESVA 129
G E ++
Sbjct: 63 GVDEDIS 69
Score = 49.1 bits (117), Expect = 2e-07
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 249 ITCLVEGHPLPQMTWFHDGNSLDSD--DHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE 306
+ C EG PLP++TW +G + +T +G L ++ VR D G Y C+A+N
Sbjct: 3 LRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEA 62
Query: 307 GSAESVA 313
G E ++
Sbjct: 63 GVDEDIS 69
Score = 41.1 bits (96), Expect = 1e-04
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 11/67 (16%)
Query: 158 IPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR------TGS-LRLYNIGPQDSGLYRCTA 210
+ C +G PLPR++W K+ D K+ + GS L + N+ +D+G Y C A
Sbjct: 3 LRCHAEGIPLPRLTWLKNG----MDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIA 58
Query: 211 SNLLGED 217
N G D
Sbjct: 59 KNEAGVD 65
Score = 41.1 bits (96), Expect = 1e-04
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 11/67 (16%)
Query: 342 IPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR------TGS-LRLYNIGPQDSGLYRCTA 394
+ C +G PLPR++W K+ D K+ + GS L + N+ +D+G Y C A
Sbjct: 3 LRCHAEGIPLPRLTWLKNG----MDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIA 58
Query: 395 SNLLGED 401
N G D
Sbjct: 59 KNEAGVD 65
Score = 30.7 bits (69), Expect = 0.60
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 8 TELVISGVQREHGGRYSCVAGNPAGVYR 35
+EL IS V+ E G Y+C+A N AGV
Sbjct: 39 SELHISNVRYEDTGAYTCIAKNEAGVDE 66
>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell
adhesion molecule contactin-2 and similar proteins.
Ig4_Contactin-2-like: fourth Ig domain of the neural
cell adhesion molecule contactin-2. Contactins are
comprised of six Ig domains followed by four fibronectin
type III (FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. Contactin-2 (aliases
TAG-1, axonin-1) facilitates cell adhesion by homophilic
binding between molecules in apposed membranes. The
first four Ig domains form the intermolecular binding
fragment which arranges as a compact U-shaped module by
contacts between Ig domains 1 and 4, and domains 2 and
3. It has been proposed that a linear zipper-like array
forms, from contactin-2 molecules alternatively provided
by the two apposed membranes.
Length = 85
Score = 49.1 bits (117), Expect = 2e-07
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVR 107
+++ T GS+ R C G+P P W +G L S++ + E L + +
Sbjct: 2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVE--AGDLRITKLS 59
Query: 108 ESDAGVYNCVAQNSEGSAESVAMIRI 133
SD+G+Y CVA+N G+ + A + +
Sbjct: 60 LSDSGMYQCVAENKHGTIYASAELAV 85
Score = 49.1 bits (117), Expect = 2e-07
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 232 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVR 291
+++ T GS+ R C G+P P W +G L S++ + E L + +
Sbjct: 2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVE--AGDLRITKLS 59
Query: 292 ESDAGVYNCVAQNSEGSAESVAMIRI 317
SD+G+Y CVA+N G+ + A + +
Sbjct: 60 LSDSGMYQCVAENKHGTIYASAELAV 85
Score = 44.5 bits (105), Expect = 9e-06
Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 144 KPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDS 203
D A GSS+ CK G P P W K+ + + N G LR+ + DS
Sbjct: 5 VISDTEADIGSSLRWECKASGNPRPAYRWLKN-GQPLASENRIEVEAGDLRITKLSLSDS 63
Query: 204 GLYRCTASNLLGEDVAEGYLTV 225
G+Y+C A N G A L V
Sbjct: 64 GMYQCVAENKHGTIYASAELAV 85
Score = 44.5 bits (105), Expect = 9e-06
Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 328 KPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDS 387
D A GSS+ CK G P P W K+ + + N G LR+ + DS
Sbjct: 5 VISDTEADIGSSLRWECKASGNPRPAYRWLKN-GQPLASENRIEVEAGDLRITKLSLSDS 63
Query: 388 GLYRCTASNLLGEDVAEGYLTV 409
G+Y+C A N G A L V
Sbjct: 64 GMYQCVAENKHGTIYASAELAV 85
>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the
L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third
immunoglobulin (Ig)-like domain of the L1 cell adhesion
molecule (CAM). L1 belongs to the L1 subfamily of cell
adhesion molecules (CAMs) and is comprised of an
extracellular region having six Ig-like domains, five
fibronectin type III domains, a transmembrane region and
an intracellular domain. L1 is primarily expressed in
the nervous system and is involved in its development
and function. L1 is associated with an X-linked
recessive disorder, X-linked hydrocephalus, MASA
syndrome, or spastic paraplegia type 1, that involves
abnormalities of axonal growth. This group also contains
the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Length = 71
Score = 48.0 bits (114), Expect = 3e-07
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 344 CKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA 403
C +G P P + W + + +R K++ +L+L N+ D G Y CTA N E A
Sbjct: 5 CIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAEN--SEGSA 62
Query: 404 EGYLTVTGE 412
+ TVT E
Sbjct: 63 RHHYTVTVE 71
Score = 47.6 bits (113), Expect = 4e-07
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 67 CLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA 125
C+ EG P P++ W L S + ++ L L+ V ESD G Y C A+NSEGSA
Sbjct: 5 CIAEGLPTPEVHWDRIDGPL-SPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSA 62
Score = 47.6 bits (113), Expect = 4e-07
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 251 CLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA 309
C+ EG P P++ W L S + ++ L L+ V ESD G Y C A+NSEGSA
Sbjct: 5 CIAEGLPTPEVHWDRIDGPL-SPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSA 62
Score = 47.2 bits (112), Expect = 7e-07
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 160 CKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA 219
C +G P P + W + + +R K++ +L+L N+ D G Y CTA N E A
Sbjct: 5 CIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAEN--SEGSA 62
Query: 220 EGYLTVT 226
+ TVT
Sbjct: 63 RHHYTVT 69
>gnl|CDD|165173 PHA02826, PHA02826, IL-1 receptor-like protein; Provisional.
Length = 227
Score = 51.8 bits (124), Expect = 4e-07
Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 28/150 (18%)
Query: 170 ISWSK-DEAEFVEDRNHK------IH-----RTGSLRLYNIGPQDSGLYRCTASNLLGED 217
++WSK D FV D + H R+ +L + N+ D G+Y CT S+ G
Sbjct: 65 VTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDEGIYICTISS--GNI 122
Query: 218 VAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQ-------MTWFHDGNSL 270
E + +T F ++ +++G S++ C G +TW+ +GN +
Sbjct: 123 CEESTIRLT-----FDSGTINYQFNSGKDSKLHCY--GTDGISSTFKDYTLTWYKNGNIV 175
Query: 271 DSDDHVTYEHDGFVLVLNGVRESDAGVYNC 300
D + ++ LV+ D+G+Y C
Sbjct: 176 LYTDRIQLRNNNSTLVIKSATHDDSGIYTC 205
Score = 38.0 bits (88), Expect = 0.014
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 77 MTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNC 116
+TW+ +GN + D + ++ LV+ D+G+Y C
Sbjct: 166 LTWYKNGNIVLYTDRIQLRNNNSTLVIKSATHDDSGIYTC 205
Score = 29.5 bits (66), Expect = 6.1
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 12/55 (21%)
Query: 354 ISWSK-DEAEFVEDRNHK------IH-----RTGSLRLYNIGPQDSGLYRCTASN 396
++WSK D FV D + H R+ +L + N+ D G+Y CT S+
Sbjct: 65 VTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDEGIYICTISS 119
>gnl|CDD|188650 cd09818, PIOX_like, Animal heme oxidases similar to plant
pathogen-inducible oxygenases. This is a diverse family
of oxygenases related to the animal heme peroxidases,
with members from plants, animals, and bacteria. The
plant pathogen-inducible oxygenases (PIOX) oxygenate
fatty acids into 2R-hydroperoxides. They may be involved
in the hypersensitive reaction, rapid and localized cell
death induced by infection with pathogens, and the
rapidly induced expression of PIOX may be caused by the
oxidative burst that occurs in the process of cell
death.
Length = 484
Score = 52.7 bits (127), Expect = 6e-07
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 573 LDLAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYG 627
+DLAA++I R R+ G+P YN +R LP A +FEDL D V +L+ +YG
Sbjct: 340 IDLAAIDILRDRERGVPRYNEFRRLLHLPPAKSFEDLTG---DEEVAAELREVYG 391
Score = 31.1 bits (71), Expect = 3.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 670 RTIDGTCNNLQHPMWGASLTGFRR 693
RT DG+ N+L +P G+ T F R
Sbjct: 1 RTADGSYNDLDNPSMGSVGTRFGR 24
>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain. This family contains
immunoglobulin-like domains.
Length = 74
Score = 47.0 bits (111), Expect = 1e-06
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFVLV 102
P I + S T +G +TC EG P P ++W+ +G+ G L
Sbjct: 1 KPVITVSPSPSVT--SGGGVTLTCSAEGGPPPPTISWYRNGSISGGSGG--LGSSGSTLT 56
Query: 103 LNGVRESDAGVYNCVAQN 120
L+ V D+G Y CVA N
Sbjct: 57 LSSVTSEDSGTYTCVASN 74
Score = 47.0 bits (111), Expect = 1e-06
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFVLV 286
P I + S T +G +TC EG P P ++W+ +G+ G L
Sbjct: 1 KPVITVSPSPSVT--SGGGVTLTCSAEGGPPPPTISWYRNGSISGGSGG--LGSSGSTLT 56
Query: 287 LNGVRESDAGVYNCVAQN 304
L+ V D+G Y CVA N
Sbjct: 57 LSSVTSEDSGTYTCVASN 74
Score = 41.6 bits (97), Expect = 8e-05
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 138 APRLVVKPFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLY 196
P + V P +G V + C G P P ISW ++ +L L
Sbjct: 1 KPVITVSPSPSVT-SGGGVTLTCSAEGGPPPPTISWYRNG-SISGGSGGLGSSGSTLTLS 58
Query: 197 NIGPQDSGLYRCTASN 212
++ +DSG Y C ASN
Sbjct: 59 SVTSEDSGTYTCVASN 74
Score = 41.6 bits (97), Expect = 8e-05
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 322 APRLVVKPFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLY 380
P + V P +G V + C G P P ISW ++ +L L
Sbjct: 1 KPVITVSPSPSVT-SGGGVTLTCSAEGGPPPPTISWYRNG-SISGGSGGLGSSGSTLTLS 58
Query: 381 NIGPQDSGLYRCTASN 396
++ +DSG Y C ASN
Sbjct: 59 SVTSEDSGTYTCVASN 74
Score = 32.7 bits (74), Expect = 0.086
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 6 SSTELVISGVQREHGGRYSCVAGN 29
S + L +S V E G Y+CVA N
Sbjct: 51 SGSTLTLSSVTSEDSGTYTCVASN 74
>gnl|CDD|143242 cd05765, Ig_3, Subgroup of the immunoglobulin (Ig) superfamily.
Ig_3: subgroup of the immunoglobulin (Ig) domain found
in the Ig superfamily. The Ig superfamily is a
heterogenous group of proteins, built on a common fold
comprised of a sandwich of two beta sheets. Members of
the Ig superfamily are components of immunoglobulin,
neuroglia, cell surface glycoproteins, such as T-cell
receptors, CD2, CD4, CD8, and membrane glycoproteins,
such as butyrophilin and chondroitin sulfate
proteoglycan core protein. A predominant feature of most
Ig domains is a disulfide bridge connecting the two
beta-sheets with a tryptophan residue packed against the
disulfide bond.
Length = 81
Score = 47.2 bits (112), Expect = 1e-06
Identities = 29/85 (34%), Positives = 36/85 (42%), Gaps = 16/85 (18%)
Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR------------TGSLRLYNIGP 200
G + C G P P I+W K V + + I R G L +YN P
Sbjct: 1 GETASFHCDVTGRPPPEITWEKQ----VHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQP 56
Query: 201 QDSGLYRCTASNLLGEDVAEGYLTV 225
QD+GLY CTA N G A L+V
Sbjct: 57 QDAGLYTCTARNSGGLLRANFPLSV 81
Score = 47.2 bits (112), Expect = 1e-06
Identities = 29/85 (34%), Positives = 36/85 (42%), Gaps = 16/85 (18%)
Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR------------TGSLRLYNIGP 384
G + C G P P I+W K V + + I R G L +YN P
Sbjct: 1 GETASFHCDVTGRPPPEITWEKQ----VHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQP 56
Query: 385 QDSGLYRCTASNLLGEDVAEGYLTV 409
QD+GLY CTA N G A L+V
Sbjct: 57 QDAGLYTCTARNSGGLLRANFPLSV 81
Score = 42.1 bits (99), Expect = 5e-05
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 15/76 (19%)
Query: 60 GSTSRITCLVEGHPLPQMTW---FHDG-NSLDSDDHVTYEHDGFV-------LVLNGVRE 108
G T+ C V G P P++TW H N + +HV G V LV+ +
Sbjct: 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVR----GNVVVTNIGQLVIYNAQP 56
Query: 109 SDAGVYNCVAQNSEGS 124
DAG+Y C A+NS G
Sbjct: 57 QDAGLYTCTARNSGGL 72
Score = 42.1 bits (99), Expect = 5e-05
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 15/76 (19%)
Query: 244 GSTSRITCLVEGHPLPQMTW---FHDG-NSLDSDDHVTYEHDGFV-------LVLNGVRE 292
G T+ C V G P P++TW H N + +HV G V LV+ +
Sbjct: 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVR----GNVVVTNIGQLVIYNAQP 56
Query: 293 SDAGVYNCVAQNSEGS 308
DAG+Y C A+NS G
Sbjct: 57 QDAGLYTCTARNSGGL 72
Score = 32.5 bits (74), Expect = 0.12
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 9 ELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV 42
+LVI Q + G Y+C A N G+ R + ++V
Sbjct: 48 QLVIYNAQPQDAGLYTCTARNSGGLLRANFPLSV 81
>gnl|CDD|143277 cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-like domain of
Neural Cell Adhesion Molecule NCAM-1 (NCAM).
Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of
Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays
important roles in the development and regeneration of
the central nervous system, in synaptogenesis and neural
migration. NCAM mediates cell-cell and cell-substratum
recognition and adhesion via homophilic (NCAM-NCAM) and
heterophilic (NCAM-non-NCAM) interactions. NCAM is
expressed as three major isoforms having different
intracellular extensions. The extracellular portion of
NCAM has five N-terminal Ig-like domains and two
fibronectin type III domains. The double zipper adhesion
complex model for NCAM homophilic binding involves Ig1,
Ig2, and Ig3. By this model, Ig1 and Ig2 mediate
dimerization of NCAM molecules situated on the same cell
surface (cis interactions), and Ig3 domains mediate
interactions between NCAM molecules expressed on the
surface of opposing cells (trans interactions), through
binding to the Ig1 and Ig2 domains. The adhesive ability
of NCAM is modulated by the addition of polysialic acid
chains to the fifth Ig-like domain.
Length = 97
Score = 47.3 bits (112), Expect = 1e-06
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 12/80 (15%)
Query: 156 VEIPCKPDGEPLPRISWSKDEAEFVED----------RNHKIHRTGSLRLYNIGPQDSGL 205
+ + C+ G+P+P I+W + R+H R SL L I D+G
Sbjct: 20 ITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHA--RVSSLTLKYIQYTDAGE 77
Query: 206 YRCTASNLLGEDVAEGYLTV 225
Y CTASN +G+D YL V
Sbjct: 78 YLCTASNTIGQDSQSMYLEV 97
Score = 47.3 bits (112), Expect = 1e-06
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 12/80 (15%)
Query: 340 VEIPCKPDGEPLPRISWSKDEAEFVED----------RNHKIHRTGSLRLYNIGPQDSGL 389
+ + C+ G+P+P I+W + R+H R SL L I D+G
Sbjct: 20 ITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHA--RVSSLTLKYIQYTDAGE 77
Query: 390 YRCTASNLLGEDVAEGYLTV 409
Y CTASN +G+D YL V
Sbjct: 78 YLCTASNTIGQDSQSMYLEV 97
Score = 36.5 bits (84), Expect = 0.007
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 65 ITCLVEGHPLPQMTWFHDGNSLDS-----DDHVTYEHDGFV--LVLNGVRESDAGVYNCV 117
+TC G P+P +TW ++ S D H+ V L L ++ +DAG Y C
Sbjct: 22 LTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT 81
Query: 118 AQNSEG 123
A N+ G
Sbjct: 82 ASNTIG 87
Score = 36.5 bits (84), Expect = 0.007
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 249 ITCLVEGHPLPQMTWFHDGNSLDS-----DDHVTYEHDGFV--LVLNGVRESDAGVYNCV 301
+TC G P+P +TW ++ S D H+ V L L ++ +DAG Y C
Sbjct: 22 LTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT 81
Query: 302 AQNSEG 307
A N+ G
Sbjct: 82 ASNTIG 87
>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in
neogenin and similar proteins. Ig4_Neogenin: fourth
immunoglobulin (Ig)-like domain in neogenin and related
proteins. Neogenin is a cell surface protein which is
expressed in the developing nervous system of vertebrate
embryos in the growing nerve cells. It is also expressed
in other embryonic tissues, and may play a general role
in developmental processes such as cell migration,
cell-cell recognition, and tissue growth regulation.
Included in this group is the tumor suppressor protein
DCC, which is deleted in colorectal carcinoma . DCC and
neogenin each have four Ig-like domains followed by six
fibronectin type III domains, a transmembrane domain,
and an intracellular domain.
Length = 71
Score = 46.5 bits (110), Expect = 1e-06
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 67 CLVEGHPLPQMTWFHDGNSLDSDDH--VTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 124
C V G P P + W +G+ + D+ + EH+ VL G+ +SD G Y C+A+N G+
Sbjct: 6 CEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVL---GLVKSDEGFYQCIAENDVGN 62
Query: 125 AESVAMIRI 133
++ A + I
Sbjct: 63 VQAGAQLII 71
Score = 46.5 bits (110), Expect = 1e-06
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 251 CLVEGHPLPQMTWFHDGNSLDSDDH--VTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 308
C V G P P + W +G+ + D+ + EH+ VL G+ +SD G Y C+A+N G+
Sbjct: 6 CEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVL---GLVKSDEGFYQCIAENDVGN 62
Query: 309 AESVAMIRI 317
++ A + I
Sbjct: 63 VQAGAQLII 71
Score = 35.7 bits (82), Expect = 0.009
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 160 CKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA 219
C+ G+P P + W K+ + KI + +L++ + D G Y+C A N +G A
Sbjct: 6 CEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQA 65
Query: 220 EGYLTV 225
L +
Sbjct: 66 GAQLII 71
Score = 35.7 bits (82), Expect = 0.009
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 344 CKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA 403
C+ G+P P + W K+ + KI + +L++ + D G Y+C A N +G A
Sbjct: 6 CEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQA 65
Query: 404 EGYLTV 409
L +
Sbjct: 66 GAQLII 71
>gnl|CDD|143275 cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (Ig)-like domain of
the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like:
fourth immunoglobulin (Ig)-like domain of the L1 cell
adhesion molecule (CAM). L1 is comprised of an
extracellular region having six Ig-like domains and five
fibronectin type III domains, a transmembrane region and
an intracellular domain. L1 is primarily expressed in
the nervous system and is involved in its development
and function. L1 is associated with an X-linked
recessive disorder, X-linked hydrocephalus, MASA
syndrome, or spastic paraplegia type 1, that involves
abnormalities of axonal growth. This group also contains
the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Length = 76
Score = 45.6 bits (108), Expect = 3e-06
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 60 GSTSRITCLVEGHPLPQMTWFHDGNSLD-SDDHVTYEHDGFVLVLNGVRESDAGVYNCVA 118
G T+R+ C VEG P P +TW +G ++ +D L+L V+ SD VY C A
Sbjct: 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEA 60
Query: 119 QNSEG 123
+N G
Sbjct: 61 RNRHG 65
Score = 45.6 bits (108), Expect = 3e-06
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLD-SDDHVTYEHDGFVLVLNGVRESDAGVYNCVA 302
G T+R+ C VEG P P +TW +G ++ +D L+L V+ SD VY C A
Sbjct: 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEA 60
Query: 303 QNSEG 307
+N G
Sbjct: 61 RNRHG 65
Score = 42.6 bits (100), Expect = 4e-05
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEFVE-DRNHKIH-RTGSLRLYNIGPQDSGLYRCTA 210
G + + C+ +G P P I+WS + A D + + H +G+L L ++ P D+ +Y+C A
Sbjct: 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEA 60
Query: 211 SNLLGEDVAEGYLTV 225
N G +A ++ V
Sbjct: 61 RNRHGNLLANAHVHV 75
Score = 42.6 bits (100), Expect = 4e-05
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVE-DRNHKIH-RTGSLRLYNIGPQDSGLYRCTA 394
G + + C+ +G P P I+WS + A D + + H +G+L L ++ P D+ +Y+C A
Sbjct: 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEA 60
Query: 395 SNLLGEDVAEGYLTV 409
N G +A ++ V
Sbjct: 61 RNRHGNLLANAHVHV 75
>gnl|CDD|143177 cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-like domain of
vascular endothelial growth factor receptor (VEGFR).
Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of
vascular endothelial growth factor receptor (VEGFR). The
VEGFRs have an extracellular component with seven
Ig-like domains, a transmembrane segment, and an
intracellular tyrosine kinase domain interrupted by a
kinase-insert domain. The VEGFR family consists of three
members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and
VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at
the Ig-like domains. VEGF-A is important to the growth
and maintenance of vascular endothelial cells and to the
development of new blood- and lymphatic-vessels in
physiological and pathological states. VEGFR-2 is a
major mediator of the mitogenic, angiogenic and
microvascular permeability-enhancing effects of VEGF-A.
VEGFR-1 may play an inhibitory part in these processes
by binding VEGF and interfering with its interaction
with VEGFR-2. VEGFR-1 has a signaling role in mediating
monocyte chemotaxis. VEGFR-2 and -1 may mediate a
chemotactic and a survival signal in hematopoietic stem
cells or leukemia cells. VEGFR-3 has been shown to be
involved in tumor angiogenesis and growth.
Length = 71
Score = 45.1 bits (107), Expect = 4e-06
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 64 RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNS 121
R+ V+ +P P++ W+ +G + + + G L + V E DAG Y V N
Sbjct: 2 RLPVKVKAYPPPEIQWYKNGKLISEKNR--TKKSGHSLTIKDVTEEDAGNYTVVLTNK 57
Score = 45.1 bits (107), Expect = 4e-06
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 248 RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNS 305
R+ V+ +P P++ W+ +G + + + G L + V E DAG Y V N
Sbjct: 2 RLPVKVKAYPPPEIQWYKNGKLISEKNR--TKKSGHSLTIKDVTEEDAGNYTVVLTNK 57
Score = 34.3 bits (79), Expect = 0.027
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 156 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLY 206
V +P K P P I W K+ + + ++N SL + ++ +D+G Y
Sbjct: 1 VRLPVKVKAYPPPEIQWYKN-GKLISEKNRTKKSGHSLTIKDVTEEDAGNY 50
Score = 34.3 bits (79), Expect = 0.027
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 340 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLY 390
V +P K P P I W K+ + + ++N SL + ++ +D+G Y
Sbjct: 1 VRLPVKVKAYPPPEIQWYKN-GKLISEKNRTKKSGHSLTIKDVTEEDAGNY 50
>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of
fibroblast growth factor (FGF) receptor. Ig2_FGFR:
second immunoglobulin (Ig)-like domain of fibroblast
growth factor (FGF) receptor. FGF receptors bind FGF
signaling polypeptides. FGFs participate in multiple
processes such as morphogenesis, development, and
angiogenesis. FGFs bind to four FGF receptor tyrosine
kinases (FGFR1, -2, -3, -4). Receptor diversity is
controlled by alternative splicing producing splice
variants with different ligand binding characteristics
and different expression patterns. FGFRs have an
extracellular region comprised of three IG-like domains,
a single transmembrane helix, and an intracellular
tyrosine kinase domain. Ligand binding and specificity
reside in the Ig-like domains 2 and 3, and the linker
region that connects these two. FGFR activation and
signaling depend on FGF-induced dimerization, a process
involving cell surface heparin or heparin sulfate
proteoglycans.
Length = 85
Score = 45.2 bits (107), Expect = 5e-06
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 151 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI------HRTGSLRLYNIGPQDSG 204
PA ++V+ C G P P + W K+ EF + H+I ++ SL + ++ P D G
Sbjct: 7 PAANTVKFRCPAAGNPTPTMRWLKNGKEF--KQEHRIGGYKVRNQHWSLIMESVVPSDKG 64
Query: 205 LYRCTASNLLG 215
Y C N G
Sbjct: 65 NYTCVVENEYG 75
Score = 45.2 bits (107), Expect = 5e-06
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 335 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI------HRTGSLRLYNIGPQDSG 388
PA ++V+ C G P P + W K+ EF + H+I ++ SL + ++ P D G
Sbjct: 7 PAANTVKFRCPAAGNPTPTMRWLKNGKEF--KQEHRIGGYKVRNQHWSLIMESVVPSDKG 64
Query: 389 LYRCTASNLLG 399
Y C N G
Sbjct: 65 NYTCVVENEYG 75
Score = 44.1 bits (104), Expect = 1e-05
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 58 STGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVY 114
+T + C G+P P M W +G + + + + L++ V SD G Y
Sbjct: 7 PAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNY 66
Query: 115 NCVAQNSEGS 124
CV +N GS
Sbjct: 67 TCVVENEYGS 76
Score = 44.1 bits (104), Expect = 1e-05
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 242 STGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVY 298
+T + C G+P P M W +G + + + + L++ V SD G Y
Sbjct: 7 PAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNY 66
Query: 299 NCVAQNSEGS 308
CV +N GS
Sbjct: 67 TCVVENEYGS 76
>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of
protein tyrosine kinase (PTK) 7, also known as CCK4.
Ig2_PTK7: domain similar to the second immunoglobulin
(Ig)-like domain in protein tyrosine kinase (PTK) 7,
also known as CCK4. PTK7 is a subfamily of the receptor
protein tyrosine kinase family, and is referred to as an
RPTK-like molecule. RPTKs transduce extracellular
signals across the cell membrane, and play important
roles in regulating cell proliferation, migration, and
differentiation. PTK7 is organized as an extracellular
portion having seven Ig-like domains, a single
transmembrane region, and a cytoplasmic tyrosine
kinase-like domain. PTK7 is considered a pseudokinase as
it has several unusual residues in some of the highly
conserved tyrosine kinase (TK) motifs; it is predicted
to lack TK activity. PTK7 may function as a
cell-adhesion molecule. PTK7 mRNA is expressed at high
levels in placenta, melanocytes, liver, lung, pancreas,
and kidney. PTK7 is overexpressed in several cancers,
including melanoma and colon cancer lines.
Length = 77
Score = 44.5 bits (105), Expect = 8e-06
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 67 CLVEGHPLPQMTWFHDGNSL-DSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA 125
C ++GHP P WF DG L D + + L L D+G+Y C A N+ GS
Sbjct: 5 CHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSV 64
Query: 126 ES 127
S
Sbjct: 65 CS 66
Score = 44.5 bits (105), Expect = 8e-06
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 251 CLVEGHPLPQMTWFHDGNSL-DSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA 309
C ++GHP P WF DG L D + + L L D+G+Y C A N+ GS
Sbjct: 5 CHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSV 64
Query: 310 ES 311
S
Sbjct: 65 CS 66
Score = 39.9 bits (93), Expect = 3e-04
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 156 VEIPCKPDGEPLPRISWSKDEAEFVEDR-NHKI-HRTGSLRLYNIGPQDSGLYRCTASNL 213
V + C DG P P W +D + + N+ + + +L L + GP DSGLY C A N
Sbjct: 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNA 60
Query: 214 LGE 216
G
Sbjct: 61 FGS 63
Score = 39.9 bits (93), Expect = 3e-04
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 340 VEIPCKPDGEPLPRISWSKDEAEFVEDR-NHKI-HRTGSLRLYNIGPQDSGLYRCTASNL 397
V + C DG P P W +D + + N+ + + +L L + GP DSGLY C A N
Sbjct: 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNA 60
Query: 398 LGE 400
G
Sbjct: 61 FGS 63
>gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk
receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth
domain of Trk receptors TrkA, TrkB and TrkC, this is an
immunoglobulin (Ig)-like domain which binds to
neurotrophin. The Trk family of receptors are tyrosine
kinase receptors. They are activated by dimerization,
leading to autophosphorylation of intracellular tyrosine
residues, and triggering the signal transduction
pathway. TrkA, TrkB, and TrkC share significant sequence
homology and domain organization. The first three
domains are leucine-rich domains. The fourth and fifth
domains are Ig-like domains playing a part in ligand
binding. TrkA, Band C mediate the trophic effects of the
neurotrophin Nerve growth factor (NGF) family. TrkA is
recognized by NGF. TrKB is recognized by brain-derived
neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC
is recognized by NT-3. NT-3 is promiscuous as in some
cell systems it activates TrkA and TrkB receptors. TrkA
is a receptor found in all major NGF targets, including
the sympathetic, trigeminal, and dorsal root ganglia,
cholinergic neurons of the basal forebrain and the
striatum. TrKB transcripts are found throughout multiple
structures of the central and peripheral nervous
systems. The TrkC gene is expressed throughout the
mammalian nervous system.
Length = 90
Score = 44.4 bits (105), Expect = 1e-05
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Query: 46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE--HDGFVLVL 103
I + P +T G T+ I C EG PLP++ W G + T E D + L L
Sbjct: 1 TIPVDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQL 60
Query: 104 NGVRESDAGVYNCVAQNSEGSAE 126
+ + C A+N G A
Sbjct: 61 SNITSETQTTVTCTAENPVGQAN 83
Score = 44.4 bits (105), Expect = 1e-05
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE--HDGFVLVL 287
I + P +T G T+ I C EG PLP++ W G + T E D + L L
Sbjct: 1 TIPVDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQL 60
Query: 288 NGVRESDAGVYNCVAQNSEGSAE 310
+ + C A+N G A
Sbjct: 61 SNITSETQTTVTCTAENPVGQAN 83
Score = 41.0 bits (96), Expect = 2e-04
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDR---NHKIHRTGSLRLYNIGPQDSGLYRCT 209
G + I C +G PLP++ W ++ R +L+L NI + CT
Sbjct: 15 GGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCT 74
Query: 210 ASNLLGEDVAEGYLTV 225
A N +G+ +TV
Sbjct: 75 AENPVGQANVSVQVTV 90
Score = 41.0 bits (96), Expect = 2e-04
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDR---NHKIHRTGSLRLYNIGPQDSGLYRCT 393
G + I C +G PLP++ W ++ R +L+L NI + CT
Sbjct: 15 GGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCT 74
Query: 394 ASNLLGEDVAEGYLTV 409
A N +G+ +TV
Sbjct: 75 AENPVGQANVSVQVTV 90
>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like
domain of myomesin and M-protein. Ig_Myomesin_like_C:
domain similar to the C-temrinal immunoglobulin
(Ig)-like domain of myomesin and M-protein. Myomesin and
M-protein are both structural proteins localized to the
M-band, a transverse structure in the center of the
sarcomere, and are candidates for M-band bridges. Both
proteins are modular, consisting mainly of repetitive
Ig-like and fibronectin type III (FnIII) domains.
Myomesin is expressed in all types of vertebrate
striated muscle; M-protein has a muscle-type specific
expression pattern. Myomesin is present in both slow and
fast fibers; M-protein is present only in fast fibers.
It has been suggested that myomesin acts as a molecular
spring with alternative splicing as a means of modifying
its elasticity.
Length = 92
Score = 44.4 bits (105), Expect = 1e-05
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 52 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH--VTYEHDGFV-LVLNGVRE 108
P T G T +TC V G P P+++W + +L DH V E + L + GV
Sbjct: 8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSS 67
Query: 109 SDAGVYNCVAQNSEGS 124
D+G Y V +N G
Sbjct: 68 EDSGKYGIVVKNKYGG 83
Score = 44.4 bits (105), Expect = 1e-05
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 236 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH--VTYEHDGFV-LVLNGVRE 292
P T G T +TC V G P P+++W + +L DH V E + L + GV
Sbjct: 8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSS 67
Query: 293 SDAGVYNCVAQNSEGS 308
D+G Y V +N G
Sbjct: 68 EDSGKYGIVVKNKYGG 83
Score = 31.7 bits (72), Expect = 0.36
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 153 GSSVEIPCKPDGEPLPRISWSKDEA--EFVEDRNHKIH--RTGSLRLYNIGPQDSGLYRC 208
G ++ + C G+P P +SW K++ + N K+ + SL + + +DSG Y
Sbjct: 16 GKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGI 75
Query: 209 TASNLLG 215
N G
Sbjct: 76 VVKNKYG 82
Score = 31.7 bits (72), Expect = 0.36
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 337 GSSVEIPCKPDGEPLPRISWSKDEA--EFVEDRNHKIH--RTGSLRLYNIGPQDSGLYRC 392
G ++ + C G+P P +SW K++ + N K+ + SL + + +DSG Y
Sbjct: 16 GKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGI 75
Query: 393 TASNLLG 399
N G
Sbjct: 76 VVKNKYG 82
>gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain
of M-protein (also known as myomesin-2).
Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like
domain of M-protein (also known as myomesin-2).
M-protein is a structural protein localized to the
M-band, a transverse structure in the center of the
sarcomere, and is a candidate for M-band bridges.
M-protein is modular consisting mainly of repetitive
IG-like and fibronectin type III (FnIII) domains, and
has a muscle-type specific expression pattern. M-protein
is present in fast fibers.
Length = 92
Score = 44.1 bits (104), Expect = 1e-05
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 52 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH--VTYEHDGFV-LVLNGVRE 108
P T G T +TC V G+P P++ WF + ++ +H V E + L + GV
Sbjct: 8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTS 67
Query: 109 SDAGVYNCVAQNSEG 123
D+G Y+ +N G
Sbjct: 68 EDSGKYSINVKNKYG 82
Score = 44.1 bits (104), Expect = 1e-05
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 236 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH--VTYEHDGFV-LVLNGVRE 292
P T G T +TC V G+P P++ WF + ++ +H V E + L + GV
Sbjct: 8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTS 67
Query: 293 SDAGVYNCVAQNSEG 307
D+G Y+ +N G
Sbjct: 68 EDSGKYSINVKNKYG 82
Score = 31.4 bits (71), Expect = 0.40
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI-----HRTGSLRLYNIGPQDSGLYR 207
G ++ + C G P P + W K++ + +E H + SL + + +DSG Y
Sbjct: 16 GKTLNLTCTVFGNPDPEVIWFKNDQD-IELSEHYSVKLEQGKYASLTIKGVTSEDSGKYS 74
Query: 208 CTASNLLG 215
N G
Sbjct: 75 INVKNKYG 82
Score = 31.4 bits (71), Expect = 0.40
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI-----HRTGSLRLYNIGPQDSGLYR 391
G ++ + C G P P + W K++ + +E H + SL + + +DSG Y
Sbjct: 16 GKTLNLTCTVFGNPDPEVIWFKNDQD-IELSEHYSVKLEQGKYASLTIKGVTSEDSGKYS 74
Query: 392 CTASNLLG 399
N G
Sbjct: 75 INVKNKYG 82
>gnl|CDD|188648 cd09816, prostaglandin_endoperoxide_synthase, Animal prostaglandin
endoperoxide synthase and related bacterial proteins.
Animal prostaglandin endoperoxide synthases, including
prostaglandin H2 synthase and a set of similar bacterial
proteins which may function as cyclooxygenases.
Prostaglandin H2 synthase catalyzes the synthesis of
prostaglandin H2 from arachidonic acid. In two reaction
steps, arachidonic acid is converted to Prostaglandin
G2, a peroxide (cyclooxygenase activity) and
subsequently converted to the end product via the
enzyme's peroxidase activity. Prostaglandin H2 synthase
is the target of aspirin and other non-steroid
anti-inflammatory drugs such as ibuprofen, which block
the substrate's access to the active site and may
acetylate a conserved serine residue. In humans and
other mammals, prostaglandin H2 synthase (PGHS), also
called cyclooxygenase (COX) is present as at least two
isozymes, PGHS-1 (or COX-1) and PGHS-2 (or COX-2),
respectively. PGHS-1 is expressed constitutively in most
mammalian cells, while the expression of PGHS-2 is
induced via inflammation response in endothelial cells,
activated macrophages, and others. COX-3 is a splice
variant of COX-1.
Length = 490
Score = 48.0 bits (115), Expect = 2e-05
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 580 IQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHP 629
I++GR + +N +R+ GLP +FE+L D V +L+ LYG
Sbjct: 365 IEQGRKLRLASFNDYRKRFGLPPYTSFEELT---GDPEVAAELEELYGDV 411
Score = 32.2 bits (74), Expect = 1.3
Identities = 28/151 (18%), Positives = 45/151 (29%), Gaps = 41/151 (27%)
Query: 744 LIDQFKRIRDG-----NIDPFVGAILEDQVDGGRVGPTMRCLLIDQ------FKRIRD-- 790
L+D R G N PF+ + ++ GR +R +
Sbjct: 336 LVDAASRQPAGRIGLRNTPPFLLPVEVRSIEQGR---KLRLASFNDYRKRFGLPPYTSFE 392
Query: 791 ----------------GNIDP---FVGAILEDQVDGGRVGPTM-RCLLIDQFKRIRD--- 827
G++D +VG ED + P M + D F
Sbjct: 393 ELTGDPEVAAELEELYGDVDAVEFYVGLFAEDPRPNSPLPPLMVEMVAPDAFSGALTNPL 452
Query: 828 GDRFWYENPSTFKPAQLTQIKQ-ASLARVIC 857
+ PSTF I + A+L ++C
Sbjct: 453 LSPEVW-KPSTFGGEGGFDIVKTATLQDLVC 482
>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like
domain of the receptor protein tyrosine phosphatase
(RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like:
domain similar to the second immunoglobulin (Ig)-like
domain found in the receptor protein tyrosine
phosphatase (RPTP)-F, also known as LAR. LAR belongs to
the RPTP type IIa subfamily. Members of this subfamily
are cell adhesion molecule-like proteins involved in
central nervous system (CNS) development. They have
large extracellular portions, comprised of multiple
Ig-like domains and two to nine fibronectin type III
(FNIII) domains, and a cytoplasmic portion having two
tandem phosphatase domains.
Length = 74
Score = 43.1 bits (101), Expect = 2e-05
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 65 ITCLVEGHPLPQMTWFHDGNSLD--SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE 122
+ C G+P P++TWF D +D S+ + G + + N ESD G Y CVA NS
Sbjct: 3 MLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENS-EESDQGKYECVATNSA 61
Query: 123 GSAESV 128
G+ S
Sbjct: 62 GTRYSA 67
Score = 43.1 bits (101), Expect = 2e-05
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 249 ITCLVEGHPLPQMTWFHDGNSLD--SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE 306
+ C G+P P++TWF D +D S+ + G + + N ESD G Y CVA NS
Sbjct: 3 MLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENS-EESDQGKYECVATNSA 61
Query: 307 GSAESV 312
G+ S
Sbjct: 62 GTRYSA 67
Score = 38.9 bits (90), Expect = 7e-04
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 158 IPCKPDGEPLPRISWSKDEAEFVEDRNHKIH--RTGSLRLYNIGPQDSGLYRCTASNLLG 215
+ C G P P I+W KD N +I R+G+L++ N D G Y C A+N G
Sbjct: 3 MLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAG 62
Score = 38.9 bits (90), Expect = 7e-04
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 342 IPCKPDGEPLPRISWSKDEAEFVEDRNHKIH--RTGSLRLYNIGPQDSGLYRCTASNLLG 399
+ C G P P I+W KD N +I R+G+L++ N D G Y C A+N G
Sbjct: 3 MLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAG 62
>gnl|CDD|143278 cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-like domain of
Neural Cell Adhesion Molecule NCAM-2 (also known as
OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth
immunoglobulin (Ig)-like domain of Neural Cell Adhesion
Molecule NCAM-2 (also known as OCAM/mamFas II and
RNCAM). NCAM-2 is organized similarly to NCAM ,
including five N-terminal Ig-like domains and two
fibronectin type III domains. NCAM-2 is differentially
expressed in the developing and mature olfactory
epithelium (OE), and may function like NCAM, as an
adhesion molecule.
Length = 98
Score = 43.0 bits (101), Expect = 3e-05
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 21/101 (20%)
Query: 46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTW--------FHDGN-SLDSDDHVTYEH 96
P IQ TT G+ + ++C EG P+P++TW F +G+ S D V +H
Sbjct: 3 PHIIQLKNETTVENGAAT-LSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQH 61
Query: 97 DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHR 137
L + V+ SD+G Y+C A + RI GH+
Sbjct: 62 GESSLHIKDVKLSDSGRYDCEAAS-----------RIGGHQ 91
Score = 43.0 bits (101), Expect = 3e-05
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 21/101 (20%)
Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTW--------FHDGN-SLDSDDHVTYEH 280
P IQ TT G+ + ++C EG P+P++TW F +G+ S D V +H
Sbjct: 3 PHIIQLKNETTVENGAAT-LSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQH 61
Query: 281 DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHR 321
L + V+ SD+G Y+C A + RI GH+
Sbjct: 62 GESSLHIKDVKLSDSGRYDCEAAS-----------RIGGHQ 91
Score = 37.6 bits (87), Expect = 0.003
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
Query: 153 GSSVEIPCKPDGEPLPRISWSK--DEAEFVE-DRN-------HKIHRTGSLRLYNIGPQD 202
+ + CK +GEP+P I+W + D F E D++ H SL + ++ D
Sbjct: 16 NGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSD 75
Query: 203 SGLYRCTASNLLGEDVAEGYLTV 225
SG Y C A++ +G YL +
Sbjct: 76 SGRYDCEAASRIGGHQKSMYLDI 98
Score = 37.6 bits (87), Expect = 0.003
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
Query: 337 GSSVEIPCKPDGEPLPRISWSK--DEAEFVE-DRN-------HKIHRTGSLRLYNIGPQD 386
+ + CK +GEP+P I+W + D F E D++ H SL + ++ D
Sbjct: 16 NGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSD 75
Query: 387 SGLYRCTASNLLGEDVAEGYLTV 409
SG Y C A++ +G YL +
Sbjct: 76 SGRYDCEAASRIGGHQKSMYLDI 98
>gnl|CDD|143216 cd05739, Ig3_RPTP_IIa_LAR_like, Third immunoglobulin (Ig)-like
domain of the receptor protein tyrosine phosphatase
(RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like:
domain similar to the third immunoglobulin (Ig)-like
domain found in the receptor protein tyrosine
phosphatase (RPTP)-F, also known as LAR. LAR belongs to
the RPTP type IIa subfamily. Members of this subfamily
are cell adhesion molecule-like proteins involved in
central nervous system (CNS) development. They have
large extracellular portions, comprised of multiple
IG-like domains and two to nine fibronectin type III
(FNIII) domains, and a cytoplasmic portion having two
tandem phosphatase domains. Included in this group is
Drosophila LAR (DLAR).
Length = 69
Score = 42.2 bits (99), Expect = 4e-05
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 212
G SV + C G P+P + W K E ++ + R L L NI +S Y C A +
Sbjct: 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNV-LELTNI--YESANYTCVAIS 57
Query: 213 LLG 215
LG
Sbjct: 58 SLG 60
Score = 42.2 bits (99), Expect = 4e-05
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 396
G SV + C G P+P + W K E ++ + R L L NI +S Y C A +
Sbjct: 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNV-LELTNI--YESANYTCVAIS 57
Query: 397 LLG 399
LG
Sbjct: 58 SLG 60
Score = 41.8 bits (98), Expect = 5e-05
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 119
G + +TC+ G P+P + W G L +D + + VL L + ES Y CVA
Sbjct: 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRN--VLELTNIYES--ANYTCVAI 56
Query: 120 NSEGSAESVAMI 131
+S G E+ A +
Sbjct: 57 SSLGMIEATAQV 68
Score = 41.8 bits (98), Expect = 5e-05
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 303
G + +TC+ G P+P + W G L +D + + VL L + ES Y CVA
Sbjct: 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRN--VLELTNIYES--ANYTCVAI 56
Query: 304 NSEGSAESVAMI 315
+S G E+ A +
Sbjct: 57 SSLGMIEATAQV 68
>gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in
neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin
(Ig)-like domain in neuregulins (NRGs). NRGs are
signaling molecules, which participate in cell-cell
interactions in the nervous system, breast, heart, and
other organ systems, and are implicated in the pathology
of diseases including schizophrenia, multiple sclerosis,
and breast cancer. There are four members of the
neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1
protein, binds to and activates the tyrosine kinases
receptors ErbB3 and ErbB4, initiating signaling
cascades. The other NRGs proteins bind one or the other
or both of these ErbBs. NRG-1 has multiple functions;
for example, in the brain it regulates various processes
such as radial glia formation and neuronal migration,
dendritic development, and expression of
neurotransmitters receptors; in the peripheral nervous
system NRG-1 regulates processes such as target cell
differentiation, and Schwann cell survival. There are
many NRG-1 isoforms, which arise from the alternative
splicing of mRNA. Less is known of the functions of the
other NRGs. NRG-2 and -3 are expressed predominantly in
the nervous system. NRG-2 is expressed by motor neurons
and terminal Schwann cells, and is concentrated near
synaptic sites and may be a signal that regulates
synaptic differentiation. NRG-4 has been shown to direct
pancreatic islet cell development towards the delta-cell
lineage.
Length = 75
Score = 42.1 bits (99), Expect = 4e-05
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 7/69 (10%)
Query: 160 CKPDGE-PLPRISWSKDEAEFV---EDRNHKIH---RTGSLRLYNIGPQDSGLYRCTASN 212
C+ E P R W KD E + RN KI + L++ DSG Y C N
Sbjct: 5 CEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVEN 64
Query: 213 LLGEDVAEG 221
+LG D
Sbjct: 65 ILGNDTVTA 73
Score = 42.1 bits (99), Expect = 4e-05
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 7/69 (10%)
Query: 344 CKPDGE-PLPRISWSKDEAEFV---EDRNHKIH---RTGSLRLYNIGPQDSGLYRCTASN 396
C+ E P R W KD E + RN KI + L++ DSG Y C N
Sbjct: 5 CEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVEN 64
Query: 397 LLGEDVAEG 405
+LG D
Sbjct: 65 ILGNDTVTA 73
Score = 30.6 bits (69), Expect = 0.54
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 71 GHPLPQMTWFHDGNSLDSDDHVTYEHDG-----FVLVLNGVRESDAGVYNCVAQNSEGSA 125
+P + WF DG L+ + L +N + +D+G Y CV +N G+
Sbjct: 10 EYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGND 69
Query: 126 ESVAMI 131
A +
Sbjct: 70 TVTANV 75
Score = 30.6 bits (69), Expect = 0.54
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 255 GHPLPQMTWFHDGNSLDSDDHVTYEHDG-----FVLVLNGVRESDAGVYNCVAQNSEGSA 309
+P + WF DG L+ + L +N + +D+G Y CV +N G+
Sbjct: 10 EYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGND 69
Query: 310 ESVAMI 315
A +
Sbjct: 70 TVTANV 75
>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in
neogenin and similar proteins. Ig1_Neogenin: first
immunoglobulin (Ig)-like domain in neogenin and related
proteins. Neogenin is a cell surface protein which is
expressed in the developing nervous system of vertebrate
embryos in the growing nerve cells. It is also expressed
in other embryonic tissues, and may play a general role
in developmental processes such as cell migration,
cell-cell recognition, and tissue growth regulation.
Included in this group is the tumor suppressor protein
DCC, which is deleted in colorectal carcinoma . DCC and
neogenin each have four Ig-like domains followed by six
fibronectin type III domains, a transmembrane domain,
and an intracellular domain.
Length = 95
Score = 41.7 bits (98), Expect = 1e-04
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 48 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGN--SLDSDDHVTYEHDGFVLVLNG 105
F+ P G + C EG P P++ W DG +L SD+ +G +L+ +
Sbjct: 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSV 61
Query: 106 VR----ESDAGVYNCVAQN 120
V + D G Y CVAQN
Sbjct: 62 VHSKHNKPDEGFYQCVAQN 80
Score = 41.7 bits (98), Expect = 1e-04
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 232 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGN--SLDSDDHVTYEHDGFVLVLNG 289
F+ P G + C EG P P++ W DG +L SD+ +G +L+ +
Sbjct: 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSV 61
Query: 290 VR----ESDAGVYNCVAQN 304
V + D G Y CVAQN
Sbjct: 62 VHSKHNKPDEGFYQCVAQN 80
Score = 39.4 bits (92), Expect = 8e-04
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 140 RLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEA--EFVEDRNHKIHRTGSLRLYN 197
+ +P D+ A G V + C +GEP P+I W KD V D + GSL + +
Sbjct: 1 WFLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITS 60
Query: 198 I-----GPQDSGLYRCTASN 212
+ D G Y+C A N
Sbjct: 61 VVHSKHNKPDEGFYQCVAQN 80
Score = 39.4 bits (92), Expect = 8e-04
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 324 RLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEA--EFVEDRNHKIHRTGSLRLYN 381
+ +P D+ A G V + C +GEP P+I W KD V D + GSL + +
Sbjct: 1 WFLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITS 60
Query: 382 I-----GPQDSGLYRCTASN 396
+ D G Y+C A N
Sbjct: 61 VVHSKHNKPDEGFYQCVAQN 80
>gnl|CDD|143282 cd05874, Ig6_NrCAM, Sixth immunoglobulin (Ig)-like domain of NrCAM
(Ng (neuronglia) CAM-related cell adhesion molecule).
Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of
NrCAM (Ng (neuronglia) CAM-related cell adhesion
molecule). NrCAM belongs to the L1 subfamily of cell
adhesion molecules (CAMs) and is comprised of an
extracellular region having six Ig-like domains and five
fibronectin type III domains, a transmembrane region,
and an intracellular domain. NrCAM is primarily
expressed in the nervous system.
Length = 77
Score = 40.7 bits (95), Expect = 2e-04
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 65 ITCLVEGHPLPQMTWFHDGN--SLDSDDHVTYEHDGFVLVLN---GVR-ESDAGVYNCVA 118
I C +G P P +W +G +D D VT + + LV+N G + E+ GVY C A
Sbjct: 3 IQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTA 62
Query: 119 QNSEGSAES 127
+N G+A S
Sbjct: 63 RNERGAAVS 71
Score = 40.7 bits (95), Expect = 2e-04
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 249 ITCLVEGHPLPQMTWFHDGN--SLDSDDHVTYEHDGFVLVLN---GVR-ESDAGVYNCVA 302
I C +G P P +W +G +D D VT + + LV+N G + E+ GVY C A
Sbjct: 3 IQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTA 62
Query: 303 QNSEGSAES 311
+N G+A S
Sbjct: 63 RNERGAAVS 71
Score = 33.8 bits (77), Expect = 0.051
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 158 IPCKPDGEPLPRISWSKDEAEFVEDRNHKIH---RTGSLRLYNIGPQDS----GLYRCTA 210
I C+ G+P P SW+++ F D++ K+ TG+L + + + + G+Y+CTA
Sbjct: 3 IQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTA 62
Query: 211 SNLLGEDVA 219
N G V+
Sbjct: 63 RNERGAAVS 71
Score = 33.8 bits (77), Expect = 0.051
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 342 IPCKPDGEPLPRISWSKDEAEFVEDRNHKIH---RTGSLRLYNIGPQDS----GLYRCTA 394
I C+ G+P P SW+++ F D++ K+ TG+L + + + + G+Y+CTA
Sbjct: 3 IQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTA 62
Query: 395 SNLLGEDVA 403
N G V+
Sbjct: 63 RNERGAAVS 71
>gnl|CDD|143176 cd04975, Ig4_SCFR_like, Fourth immunoglobulin (Ig)-like domain of
stem cell factor receptor (SCFR) and similar proteins.
Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of
stem cell factor receptor (SCFR). In addition to SCFR
this group also includes the fourth Ig domain of
platelet-derived growth factor receptors (PDGFR), alpha
and beta, the fourth Ig domain of macrophage colony
stimulating factor (M-CSF), and the Ig domain of the
receptor tyrosine kinase KIT. SCFR and the PDGFR alpha
and beta have similar organization: an extracellular
component having five Ig-like domains, a transmembrane
segment, and a cytoplasmic portion having protein
tyrosine kinase activity. SCFR and its ligand SCF are
critical for normal hematopoiesis, mast cell
development, melanocytes and gametogenesis. SCF binds to
the second and third Ig-like domains of SCFR, this
fourth Ig-like domain participates in SCFR dimerization,
which follows ligand binding. Deletion of this fourth
SCFR_Ig-like domain abolishes the ligand-induced
dimerization of SCFR and completely inhibits signal
transduction. PDGF is a potent mitogen for connective
tissue cells. PDGF-stimulated processes are mediated by
three different PDGFs (PDGF-A,-B, and C). PDGFR alpha
binds to all three PDGFs, whereas the PDGFR beta, binds
only to PDGF-B. In mice, PDGFR alpha, and PDGFR beta,
are essential for normal development.
Length = 101
Score = 41.1 bits (97), Expect = 2e-04
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 73 PLPQMTWFHDGNSL--DSDDHVTYEHDG-----FVLVLNGVRESDAGVYNCVAQNSEGSA 125
P P + W +D +L + VT E++ L L ++ES+AG Y +A NS+ S
Sbjct: 32 PPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK 91
Query: 126 E 126
Sbjct: 92 S 92
Score = 41.1 bits (97), Expect = 2e-04
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 257 PLPQMTWFHDGNSL--DSDDHVTYEHDG-----FVLVLNGVRESDAGVYNCVAQNSEGSA 309
P P + W +D +L + VT E++ L L ++ES+AG Y +A NS+ S
Sbjct: 32 PPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK 91
Query: 310 E 310
Sbjct: 92 S 92
>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin
and similar proteins. Ig_Titin_like: immunoglobulin
(Ig)-like domain found in titin-like proteins. Titin
(also called connectin) is a fibrous sarcomeric protein
specifically found in vertebrate striated muscle. Titin
is gigantic, depending on isoform composition it ranges
from 2970 to 3700 kDa, and is of a length that spans
half a sarcomere. Titin largely consists of multiple
repeats of Ig-like and fibronectin type 3 (FN-III)-like
domains. Titin connects the ends of myosin thick
filaments to Z disks and extends along the thick
filament to the H zone. It appears to function
similarly to an elastic band, keeping the myosin
filaments centered in the sarcomere during muscle
contraction or stretching. Within the sarcomere, titin
is also attached to or is associated with myosin binding
protein C (MyBP-C). MyBP-C appears to contribute to the
generation of passive tension by titin, and similar to
titin has repeated Ig-like and FN-III domains. Also
included in this group are worm twitchin and insect
projectin, thick filament proteins of invertebrate
muscle, which also have repeated Ig-like and FN-III
domains.
Length = 74
Score = 40.3 bits (95), Expect = 2e-04
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 64 RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE-HDGF-VLVLNGVRESDAGVYNCVAQNS 121
R+ + G P P +TW DG L V E LV+ SD+G Y +N
Sbjct: 3 RLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNP 62
Query: 122 EGSAES 127
G +
Sbjct: 63 AGEKSA 68
Score = 40.3 bits (95), Expect = 2e-04
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 248 RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE-HDGF-VLVLNGVRESDAGVYNCVAQNS 305
R+ + G P P +TW DG L V E LV+ SD+G Y +N
Sbjct: 3 RLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNP 62
Query: 306 EGSAES 311
G +
Sbjct: 63 AGEKSA 68
Score = 38.7 bits (91), Expect = 6e-04
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 156 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASN 212
+E+P G P P ++WSKD +I T SL + N DSG Y T N
Sbjct: 4 LEVPIS--GRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKN 61
Query: 213 LLGEDVA 219
GE A
Sbjct: 62 PAGEKSA 68
Score = 38.7 bits (91), Expect = 6e-04
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 340 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASN 396
+E+P G P P ++WSKD +I T SL + N DSG Y T N
Sbjct: 4 LEVPIS--GRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKN 61
Query: 397 LLGEDVA 403
GE A
Sbjct: 62 PAGEKSA 68
Score = 37.2 bits (87), Expect = 0.003
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV 42
+ SST LVI +R G+Y+ NPAG ++V V
Sbjct: 33 IETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74
>gnl|CDD|143235 cd05758, Ig5_KIRREL3-like, Fifth immunoglobulin (Ig)-like domain of
Kirrel (kin of irregular chiasm-like) 3 (also known as
Neph2) and similar proteins. Ig5_KIRREL3-like: domain
similar to the fifth immunoglobulin (Ig)-like domain of
Kirrel (kin of irregular chiasm-like) 3 (also known as
Neph2). This protein has five Ig-like domains, one
transmembrane domain, and a cytoplasmic tail. Included
in this group is mammalian Kirrel (Neph1), Kirrel2
(Neph3), and Drosophila RST (irregular chiasm
C-roughest) protein. These proteins contain multiple Ig
domains, have properties of cell adhesion molecules, and
are important in organ development.
Length = 98
Score = 40.9 bits (96), Expect = 2e-04
Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 13/92 (14%)
Query: 44 APPIFIQRPVSTTYST-GSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGF-- 99
PPI T Y+ G R+ C + P P ++ W N L+S Y +
Sbjct: 1 GPPIITSEA--TQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPS 58
Query: 100 ------VLVLNGVRESD-AGVYNCVAQNSEGS 124
L ++ +ESD YNC A NS GS
Sbjct: 59 PGGVLSTLTISNTQESDFQTSYNCTAWNSFGS 90
Score = 40.9 bits (96), Expect = 2e-04
Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 13/92 (14%)
Query: 228 APPIFIQRPVSTTYST-GSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGF-- 283
PPI T Y+ G R+ C + P P ++ W N L+S Y +
Sbjct: 1 GPPIITSEA--TQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPS 58
Query: 284 ------VLVLNGVRESD-AGVYNCVAQNSEGS 308
L ++ +ESD YNC A NS GS
Sbjct: 59 PGGVLSTLTISNTQESDFQTSYNCTAWNSFGS 90
Score = 31.2 bits (71), Expect = 0.54
Identities = 20/79 (25%), Positives = 26/79 (32%), Gaps = 11/79 (13%)
Query: 153 GSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHK--IHRTGS-------LRLYNIGPQD 202
G + C P P RI W+ E E + + + S L + N D
Sbjct: 16 GDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESD 75
Query: 203 -SGLYRCTASNLLGEDVAE 220
Y CTA N G A
Sbjct: 76 FQTSYNCTAWNSFGSGTAI 94
Score = 31.2 bits (71), Expect = 0.54
Identities = 20/79 (25%), Positives = 26/79 (32%), Gaps = 11/79 (13%)
Query: 337 GSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHK--IHRTGS-------LRLYNIGPQD 386
G + C P P RI W+ E E + + + S L + N D
Sbjct: 16 GDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESD 75
Query: 387 -SGLYRCTASNLLGEDVAE 404
Y CTA N G A
Sbjct: 76 FQTSYNCTAWNSFGSGTAI 94
>gnl|CDD|143203 cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors. Ig4_Robo: domain similar to the
third immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors. Robo receptors play a role in
the development of the central nervous system (CNS), and
are receptors of Slit protein. Slit is a repellant
secreted by the neural cells in the midline. Slit acts
through Robo to prevent most neurons from crossing the
midline from either side. Three mammalian Robo homologs
(robo1, -2, and -3), and three mammalian Slit homologs
(Slit-1,-2, -3), have been identified. Commissural
axons, which cross the midline, express low levels of
Robo; longitudinal axons, which avoid the midline,
express high levels of Robo. robo1, -2, and -3 are
expressed by commissural neurons in the vertebrate
spinal cord and Slits 1, -2, -3 are expressed at the
ventral midline. Robo-3 is a divergent member of the
Robo family which instead of being a positive regulator
of slit responsiveness, antagonizes slit responsiveness
in precrossing axons. The Slit-Robo interaction is
mediated by the second leucine-rich repeat (LRR) domain
of Slit and the two N-terminal Ig domains of Robo, Ig1
and Ig2. The primary Robo binding site for Slit2 has
been shown by surface plasmon resonance experiments and
mutational analysis to be is the Ig1 domain, while the
Ig2 domain has been proposed to harbor a weak secondary
binding site.
Length = 90
Score = 40.7 bits (95), Expect = 2e-04
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH--------KIHRTGSLRLYNIGPQDSG 204
G +V C+ G P P I W K+ ++ + + +TG L + N+ D G
Sbjct: 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVG 60
Query: 205 LYRCTASNLLGEDVAEGYLTVTGA 228
Y C N+ G + + YL VT
Sbjct: 61 YYICQTLNVAGSILTKAYLEVTDV 84
Score = 39.9 bits (93), Expect = 5e-04
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH--------KIHRTGSLRLYNIGPQDSG 388
G +V C+ G P P I W K+ ++ + + +TG L + N+ D G
Sbjct: 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVG 60
Query: 389 LYRCTASNLLGEDVAEGYLTVTG 411
Y C N+ G + + YL VT
Sbjct: 61 YYICQTLNVAGSILTKAYLEVTD 83
Score = 30.7 bits (69), Expect = 0.66
Identities = 23/90 (25%), Positives = 33/90 (36%), Gaps = 9/90 (10%)
Query: 60 GSTSRITCLVEGHPLPQMTWFHDGN--------SLDSDDHVTYEHDGFVLVLNGVRESDA 111
G T C G+P P + W +G+ S + G L + V+ SD
Sbjct: 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTG-DLTITNVQRSDV 59
Query: 112 GVYNCVAQNSEGSAESVAMIRINGHRAPRL 141
G Y C N GS + A + + A R
Sbjct: 60 GYYICQTLNVAGSILTKAYLEVTDVIADRP 89
Score = 30.7 bits (69), Expect = 0.66
Identities = 23/90 (25%), Positives = 33/90 (36%), Gaps = 9/90 (10%)
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGN--------SLDSDDHVTYEHDGFVLVLNGVRESDA 295
G T C G+P P + W +G+ S + G L + V+ SD
Sbjct: 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTG-DLTITNVQRSDV 59
Query: 296 GVYNCVAQNSEGSAESVAMIRINGHRAPRL 325
G Y C N GS + A + + A R
Sbjct: 60 GYYICQTLNVAGSILTKAYLEVTDVIADRP 89
>gnl|CDD|143258 cd05850, Ig1_Contactin-2, First Ig domain of contactin-2.
Ig1_Contactin-2: First Ig domain of the neural cell
adhesion molecule contactin-2-like. Contactins are
comprised of six Ig domains followed by four fibronectin
type III (FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. Contactin-2 (TAG-1,
axonin-1) facilitates cell adhesion by homophilic
binding between molecules in apposed membranes. It may
play a part in the neuronal processes of neurite
outgrowth, axon guidance and fasciculation, and neuronal
migration. The first four Ig domains form the
intermolecular binding fragment, which arranges as a
compact U-shaped module by contacts between IG domains 1
and 4, and domains 2 and 3. The different contactins
show different expression patterns in the central
nervous system. During development and in adulthood,
contactin-2 is transiently expressed in subsets of
central and peripheral neurons. Contactin-2 is also
expressed in retinal amacrine cells in the developing
chick retina, corresponding to the period of formation
and maturation of AC processes.
Length = 94
Score = 40.7 bits (95), Expect = 2e-04
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Query: 46 PIFIQRPVSTTYSTGSTSR---ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLV 102
P+F ++P S + GS + C P W +G + Y LV
Sbjct: 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLV 61
Query: 103 L-NGVRESDAGVYNCVAQNSEGSAES-VAMIR 132
+ N + DAG Y C+A N G+ S A +R
Sbjct: 62 INNPQKARDAGSYQCLAINRCGTVVSREANLR 93
Score = 40.7 bits (95), Expect = 2e-04
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Query: 230 PIFIQRPVSTTYSTGSTSR---ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLV 286
P+F ++P S + GS + C P W +G + Y LV
Sbjct: 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLV 61
Query: 287 L-NGVRESDAGVYNCVAQNSEGSAES-VAMIR 316
+ N + DAG Y C+A N G+ S A +R
Sbjct: 62 INNPQKARDAGSYQCLAINRCGTVVSREANLR 93
>gnl|CDD|143301 cd05893, Ig_Palladin_C, C-terminal immunoglobulin (Ig)-like domain
of palladin. Ig_Palladin_C: C-terminal immunoglobulin
(Ig)-like domain of palladin. Palladin belongs to the
palladin-myotilin-myopalladin family. Proteins belonging
to this family contain multiple Ig-like domains and
function as scaffolds, modulating actin cytoskeleton.
Palladin binds to alpha-actinin ezrin,
vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP,
mDia interacting protein), and Src. Palladin also binds
F-actin directly, via its Ig3 domain. Palladin is
expressed as several alternatively spliced isoforms,
having various combinations of Ig-like domains, in a
cell-type-specific manner. It has been suggested that
palladin's different Ig-like domains may be specialized
for distinct functions.
Length = 75
Score = 39.7 bits (92), Expect = 3e-04
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 64 RITCLVEGHPLPQMTWFHDGNSL-DSDDHVTYEHD--GFV-LVLNGVRESDAGVYNCVAQ 119
R+ C V G P PQ+ W + SL + D V+ D G++ L++ G + DAG Y A+
Sbjct: 2 RLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAK 61
Query: 120 NSEGSAESVAMIRI 133
N G A + +
Sbjct: 62 NEAGIVSCTARLDV 75
Score = 39.7 bits (92), Expect = 3e-04
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 248 RITCLVEGHPLPQMTWFHDGNSL-DSDDHVTYEHD--GFV-LVLNGVRESDAGVYNCVAQ 303
R+ C V G P PQ+ W + SL + D V+ D G++ L++ G + DAG Y A+
Sbjct: 2 RLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAK 61
Query: 304 NSEGSAESVAMIRI 317
N G A + +
Sbjct: 62 NEAGIVSCTARLDV 75
>gnl|CDD|143326 cd07702, Ig2_VEGFR-1, Second immunoglobulin (Ig)-like domain of
vascular endothelial growth factor receptor 1 (VEGFR-1).
Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of
vascular endothelial growth factor receptor 1 (VEGFR-1).
VEGFRs have an extracellular component with seven
Ig-like domains, a transmembrane segment, and an
intracellular tyrosine kinase domain interrupted by a
kinase-insert domain. VEGFRs bind VEGFs with high
affinity at the Ig-like domains. VEGFR-1 binds VEGF-A
strongly; VEGF-A is important to the growth and
maintenance of vascular endothelial cells and to the
development of new blood- and lymphatic-vessels in
physiological and pathological states. VEGFR-1 may play
an inhibitory rolet in the function of VEGFR-2 by
binding VEGF-A and interfering with its interaction with
VEGFR-2. VEGFR-1 has a signaling role in mediating
monocyte chemotaxis and may mediate a chemotactic and a
survival signal in hematopoietic stem cells or leukemia
cells.
Length = 72
Score = 39.5 bits (92), Expect = 3e-04
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 64 RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 119
R+T V+ P P++ W DG ++ Y DG+ LV+ V E DAG+Y +
Sbjct: 2 RLTPKVKAFPAPEVIWLKDG-LPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLG 56
Score = 39.5 bits (92), Expect = 3e-04
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 248 RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 303
R+T V+ P P++ W DG ++ Y DG+ LV+ V E DAG+Y +
Sbjct: 2 RLTPKVKAFPAPEVIWLKDG-LPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLG 56
>gnl|CDD|143210 cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig)-like domain of
the L1 cell adhesion molecule (CAM) and similar
proteins. Ig6_L1-CAM_like: domain similar to the sixth
immunoglobulin (Ig)-like domain of the L1 cell adhesion
molecule (CAM). L1 belongs to the L1 subfamily of cell
adhesion molecules (CAMs) and is comprised of an
extracellular region having six Ig-like domains and five
fibronectin type III domains, a transmembrane region and
an intracellular domain. L1 is primarily expressed in
the nervous system and is involved in its development
and function. L1 is associated with an X-linked
recessive disorder, X-linked hydrocephalus, MASA
syndrome, or spastic paraplegia type 1, that involves
abnormalities of axonal growth. This group also contains
NrCAM [Ng(neuronglia)CAM-related cell adhesion
molecule], which is primarily expressed in the nervous
system, and human neurofascin.
Length = 77
Score = 39.7 bits (93), Expect = 4e-04
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 158 IPCKPDGEPLPRISWSKDEAEFVEDRNHKI---HRTGSLRLYNIG---PQD-SGLYRCTA 210
I C+ G P P SW+++ F +++ ++ +G+L + N+ +D G Y+C A
Sbjct: 3 IKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYA 62
Query: 211 SNLLG 215
SN LG
Sbjct: 63 SNELG 67
Score = 39.7 bits (93), Expect = 4e-04
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 342 IPCKPDGEPLPRISWSKDEAEFVEDRNHKI---HRTGSLRLYNIG---PQD-SGLYRCTA 394
I C+ G P P SW+++ F +++ ++ +G+L + N+ +D G Y+C A
Sbjct: 3 IKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYA 62
Query: 395 SNLLG 399
SN LG
Sbjct: 63 SNELG 67
Score = 36.6 bits (85), Expect = 0.005
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 65 ITCLVEGHPLPQMTWFHDGN--SLDSDDHVTYEHDGFVLVL---NGVRESD-AGVYNCVA 118
I C +G+P P +W +G + D VT + D LV+ NG R D G Y C A
Sbjct: 3 IKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYA 62
Query: 119 QNSEGSAES 127
N G+A S
Sbjct: 63 SNELGTAIS 71
Score = 36.6 bits (85), Expect = 0.005
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 249 ITCLVEGHPLPQMTWFHDGN--SLDSDDHVTYEHDGFVLVL---NGVRESD-AGVYNCVA 302
I C +G+P P +W +G + D VT + D LV+ NG R D G Y C A
Sbjct: 3 IKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYA 62
Query: 303 QNSEGSAES 311
N G+A S
Sbjct: 63 SNELGTAIS 71
>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II
(D2) of the human basement membrane heparan sulfate
proteoglycan perlecan, also known as HSPG2.
Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain
II (D2) of the human basement membrane heparan sulfate
proteoglycan perlecan, also known as HSPG2. Perlecan
consists of five domains. Domain I has three putative
heparan sulfate attachment sites; domain II has four LDL
receptor-like repeats, and one Ig-like repeat; domain
III resembles the short arm of laminin chains; domain IV
has multiple Ig-like repeats (21 repeats in human
perlecan); and domain V resembles the globular G domain
of the laminin A chain and internal repeats of EGF.
Perlecan may participate in a variety of biological
functions including cell binding, LDL-metabolism,
basement membrane assembly and selective permeability,
calcium binding, and growth- and neurite-promoting
activities.
Length = 78
Score = 39.4 bits (92), Expect = 4e-04
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR---TGSLRLYNIGPQDSGLYRCT 209
G +VE C G P P I+W + + I G+L + ++ D G Y C
Sbjct: 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCE 60
Query: 210 ASNLLG 215
A N G
Sbjct: 61 AINTRG 66
Score = 39.4 bits (92), Expect = 4e-04
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR---TGSLRLYNIGPQDSGLYRCT 393
G +VE C G P P I+W + + I G+L + ++ D G Y C
Sbjct: 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCE 60
Query: 394 ASNLLG 399
A N G
Sbjct: 61 AINTRG 66
Score = 37.9 bits (88), Expect = 0.001
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF--VLVLNGVRESDAGVYNCV 117
G T TC+ G P P + W + + V+ +G L + V+ESD G Y C
Sbjct: 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCE 60
Query: 118 AQNSEG 123
A N+ G
Sbjct: 61 AINTRG 66
Score = 37.9 bits (88), Expect = 0.001
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF--VLVLNGVRESDAGVYNCV 301
G T TC+ G P P + W + + V+ +G L + V+ESD G Y C
Sbjct: 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCE 60
Query: 302 AQNSEG 307
A N+ G
Sbjct: 61 AINTRG 66
>gnl|CDD|143257 cd05849, Ig1_Contactin-1, First Ig domain of contactin-1.
Ig1_Contactin-1: First Ig domain of the neural cell
adhesion molecule contactin-1. Contactins are comprised
of six Ig domains followed by four fibronectin type III
(FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. Contactin-1 is
differentially expressed in tumor tissues and may,
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 93
Score = 39.9 bits (93), Expect = 5e-04
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 46 PIFIQRPVSTTYSTGSTS---RITCLVEGHPLPQMTWFHDGNSLD-SDDHVTYEHDGFVL 101
P+F ++P+ T Y ST + C +P P W + +D ++D Y G L
Sbjct: 2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDR--YSMVGGNL 59
Query: 102 VLNGVRES-DAGVYNCVAQNSEGSAES 127
V+N + DAG Y C+ N G S
Sbjct: 60 VINNPDKYKDAGRYVCIVSNIYGKVRS 86
Score = 39.9 bits (93), Expect = 5e-04
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 230 PIFIQRPVSTTYSTGSTS---RITCLVEGHPLPQMTWFHDGNSLD-SDDHVTYEHDGFVL 285
P+F ++P+ T Y ST + C +P P W + +D ++D Y G L
Sbjct: 2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDR--YSMVGGNL 59
Query: 286 VLNGVRES-DAGVYNCVAQNSEGSAES 311
V+N + DAG Y C+ N G S
Sbjct: 60 VINNPDKYKDAGRYVCIVSNIYGKVRS 86
Score = 33.0 bits (75), Expect = 0.12
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 144 KPFDMRAPAGSS---VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGP 200
+P D P S+ V + C+ P P W K+ + + G+L + N
Sbjct: 7 QPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDK 66
Query: 201 Q-DSGLYRCTASNLLG 215
D+G Y C SN+ G
Sbjct: 67 YKDAGRYVCIVSNIYG 82
Score = 33.0 bits (75), Expect = 0.12
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 328 KPFDMRAPAGSS---VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGP 384
+P D P S+ V + C+ P P W K+ + + G+L + N
Sbjct: 7 QPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDK 66
Query: 385 Q-DSGLYRCTASNLLG 399
D+G Y C SN+ G
Sbjct: 67 YKDAGRYVCIVSNIYG 82
>gnl|CDD|188653 cd09821, An_peroxidase_bacterial_2, Uncharacterized bacterial
family of heme peroxidases. Animal heme peroxidases are
diverse family of enzymes which are not restricted to
metazoans; members are also found in fungi, and plants,
and in bacteria - like this family of uncharacterized
proteins.
Length = 570
Score = 43.2 bits (102), Expect = 6e-04
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 792 NIDPFVGAILEDQV-DGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQA 850
N+D +VG + E QV GG +G T + +Q R++DGDRF+Y + T L Q++
Sbjct: 485 NVDLWVGGLAEKQVPFGGMLGSTFNFVFEEQMDRLQDGDRFYYLS-RTAGLDLLNQLENN 543
Query: 851 SLARVI 856
+ A +I
Sbjct: 544 TFADMI 549
Score = 43.2 bits (102), Expect = 6e-04
Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 516 DLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAVSLDL 575
D L F P L E G +LRG +++ +TD L + LDL
Sbjct: 321 DAFLNPVAFLPATLYAEEGAGAILRGMTRQVG------NEIDEFVTDALRNNLVGLPLDL 374
Query: 576 AAMNIQRGRDHGIPEYNAWRE 596
AA+NI RGRD G+P N R
Sbjct: 375 AALNIARGRDTGLPTLNEARA 395
Score = 30.8 bits (70), Expect = 3.5
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 718 NIDPFVGAILEDQV-DGGRVGPTMRCLLIDQFKRIRDG 754
N+D +VG + E QV GG +G T + +Q R++DG
Sbjct: 485 NVDLWVGGLAEKQVPFGGMLGSTFNFVFEEQMDRLQDG 522
Score = 30.8 bits (70), Expect = 3.5
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 755 NIDPFVGAILEDQV-DGGRVGPTMRCLLIDQFKRIRDG 791
N+D +VG + E QV GG +G T + +Q R++DG
Sbjct: 485 NVDLWVGGLAEKQVPFGGMLGSTFNFVFEEQMDRLQDG 522
>gnl|CDD|143178 cd04977, Ig1_NCAM-1_like, First immunoglobulin (Ig)-like domain of
neural cell adhesion molecule NCAM-1 and similar
proteins. Ig1_NCAM-1 like: first immunoglobulin
(Ig)-like domain of neural cell adhesion molecule
NCAM-1. NCAM-1 plays important roles in the development
and regeneration of the central nervous system, in
synaptogenesis and neural migration. NCAM mediates
cell-cell and cell-substratum recognition and adhesion
via homophilic (NCAM-NCAM), and heterophilic
(NCAM-nonNCAM), interactions. NCAM is expressed as three
major isoforms having different intracellular
extensions. The extracellular portion of NCAM has five
N-terminal Ig-like domains and two fibronectin type III
domains. The double zipper adhesion complex model for
NCAM homophilic binding involves the Ig1, Ig2, and Ig3
domains. By this model, Ig1 and Ig2 mediate dimerization
of NCAM molecules situated on the same cell surface (cis
interactions), and Ig3 domains mediate interactions
between NCAM molecules expressed on the surface of
opposing cells (trans interactions), through binding to
the Ig1 and Ig2 domains. The adhesive ability of NCAM is
modulated by the addition of polysialic acid chains to
the fifth Ig-like domain. Also included in this group is
NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2
is differentially expressed in the developing and mature
olfactory epithelium (OE).
Length = 92
Score = 39.4 bits (92), Expect = 6e-04
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAE-FVEDRNHKIHRTGSLR----LYNIGPQDSGLYR 207
G S C+ GEP ISW E V + + + +R +YN +D+G+Y+
Sbjct: 15 GESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYK 73
Query: 208 CTASNLLGED 217
C A++ G +
Sbjct: 74 CVATDAKGTE 83
Score = 39.4 bits (92), Expect = 6e-04
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAE-FVEDRNHKIHRTGSLR----LYNIGPQDSGLYR 391
G S C+ GEP ISW E V + + + +R +YN +D+G+Y+
Sbjct: 15 GESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYK 73
Query: 392 CTASNLLGED 401
C A++ G +
Sbjct: 74 CVATDAKGTE 83
Score = 31.3 bits (71), Expect = 0.48
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 52 PVSTTYSTGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDH-VTYEHDGFV--LVLNGVR 107
P S G + C V G P ++WF +G L + ++D L +
Sbjct: 7 PSQGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNAN 65
Query: 108 ESDAGVYNCVAQNSEG 123
DAG+Y CVA +++G
Sbjct: 66 IEDAGIYKCVATDAKG 81
Score = 31.3 bits (71), Expect = 0.48
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 236 PVSTTYSTGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDH-VTYEHDGFV--LVLNGVR 291
P S G + C V G P ++WF +G L + ++D L +
Sbjct: 7 PSQGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNAN 65
Query: 292 ESDAGVYNCVAQNSEG 307
DAG+Y CVA +++G
Sbjct: 66 IEDAGIYKCVATDAKG 81
>gnl|CDD|143174 cd04973, Ig1_FGFR, First immunoglobulin (Ig)-like domain of
fibroblast growth factor receptor (FGFR). Ig1_FGFR: The
first immunoglobulin (Ig)-like domain of fibroblast
growth factor receptor (FGFR). Fibroblast growth factors
(FGFs) participate in morphogenesis, development,
angiogenesis, and wound healing. These FGF-stimulated
processes are mediated by four FGFR tyrosine kinases
(FGRF1-4). FGFRs are comprised of an extracellular
portion consisting of three Ig-like domains, a
transmembrane helix, and a cytoplasmic portion having
protein tyrosine kinase activity. The highly conserved
Ig-like domains 2 and 3, and the linker region between
D2 and D3 define a general binding site for all FGFs.
Length = 79
Score = 38.7 bits (90), Expect = 8e-04
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 150 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS-LRLYNIGPQDSGLYRC 208
A G +++ C+ + + I+W+KD + E+ +I TG +++ + P+DSGLY C
Sbjct: 6 AHPGDLLQLRCRLR-DDVQSINWTKDGVQLGENNRTRI--TGEEVQIKDAVPRDSGLYAC 62
Query: 209 TASNLLGED 217
S+ G D
Sbjct: 63 VTSSPSGSD 71
Score = 38.7 bits (90), Expect = 8e-04
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 334 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS-LRLYNIGPQDSGLYRC 392
A G +++ C+ + + I+W+KD + E+ +I TG +++ + P+DSGLY C
Sbjct: 6 AHPGDLLQLRCRLR-DDVQSINWTKDGVQLGENNRTRI--TGEEVQIKDAVPRDSGLYAC 62
Query: 393 TASNLLGED 401
S+ G D
Sbjct: 63 VTSSPSGSD 71
>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily.
Ig_2: subgroup of the immunoglobulin (Ig) domain found
in the Ig superfamily. The Ig superfamily is a
heterogenous group of proteins, built on a common fold
comprised of a sandwich of two beta sheets. Members of
the Ig superfamily are components of immunoglobulin,
neuroglia, cell surface glycoproteins, such as T-cell
receptors, CD2, CD4, CD8, and membrane glycoproteins,
such as butyrophilin and chondroitin sulfate
proteoglycan core protein. A predominant feature of most
Ig domains is a disulfide bridge connecting the two
beta-sheets with a tryptophan residue packed against the
disulfide bond.
Length = 74
Score = 38.6 bits (90), Expect = 8e-04
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI-HRTGSLRLYNIGPQDSGLYRCTAS 211
G + CK G+P P I W + + + + + + + G+L + +D+G + C AS
Sbjct: 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIAS 60
Query: 212 NLLGEDVA 219
N GE A
Sbjct: 61 NAAGEATA 68
Score = 38.6 bits (90), Expect = 8e-04
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI-HRTGSLRLYNIGPQDSGLYRCTAS 395
G + CK G+P P I W + + + + + + + G+L + +D+G + C AS
Sbjct: 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIAS 60
Query: 396 NLLGEDVA 403
N GE A
Sbjct: 61 NAAGEATA 68
Score = 30.9 bits (70), Expect = 0.43
Identities = 18/66 (27%), Positives = 27/66 (40%)
Query: 60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 119
G + + C G P P + W L S+ T +D L + D G + C+A
Sbjct: 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIAS 60
Query: 120 NSEGSA 125
N+ G A
Sbjct: 61 NAAGEA 66
Score = 30.9 bits (70), Expect = 0.43
Identities = 18/66 (27%), Positives = 27/66 (40%)
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 303
G + + C G P P + W L S+ T +D L + D G + C+A
Sbjct: 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIAS 60
Query: 304 NSEGSA 309
N+ G A
Sbjct: 61 NAAGEA 66
>gnl|CDD|188649 cd09817, linoleate_diol_synthase_like, Linoleate (8R)-dioxygenase
and related enzymes. These fungal enzymes, related to
animal heme peroxidases, catalyze the oxygenation of
linoleate and similar targets. Linoleate
(8R)-dioxygenase, also called linoleate:oxygen
7S,8S-oxidoreductase, generates
(9Z,12Z)-(7S,8S)-dihydroxyoctadeca-9,12-dienoate as a
product. Other members are 5,8-linoleate dioxygenase
(LDS, ppoA) and linoleate 10R-dioxygenase (ppoC),
involved in the biosynthesis of oxylipins.
Length = 550
Score = 42.3 bits (100), Expect = 0.001
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 578 MNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHP 629
+ I + R+ + N +R++ GL TFED+ D V + L+ LYGHP
Sbjct: 378 LGILQAREWNVATLNEFRKFFGLKPYETFEDINS---DPEVAEALELLYGHP 426
>gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of
myotilin, palladin, and myopalladin.
Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in
myotilin, palladin, and myopalladin. Myotilin,
palladin, and myopalladin function as scaffolds that
regulate actin organization. Myotilin and myopalladin
are most abundant in skeletal and cardiac muscle;
palladin is ubiquitously expressed in the organs of
developing vertebrates and plays a key role in cellular
morphogenesis. The three family members each interact
with specific molecular partners: all three bind to
alpha-actinin; in addition, palladin also binds to
vasodilator-stimulated phosphoprotein (VASP) and ezrin,
myotilin binds to filamin and actin, and myopalladin
also binds to nebulin and cardiac ankyrin repeat protein
(CARP).
Length = 75
Score = 38.2 bits (89), Expect = 0.001
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 64 RITCLVEGHPLPQMTWFHDGNSLDSD-DHVTYEHDG---FVLVLNGVRESDAGVYNCVAQ 119
R+ C V P PQ+ W + L + D ++ D L++ + DAG Y A
Sbjct: 2 RLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAV 61
Query: 120 NSEGSAESVA 129
N G A
Sbjct: 62 NEAGVVSCNA 71
Score = 38.2 bits (89), Expect = 0.001
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 248 RITCLVEGHPLPQMTWFHDGNSLDSD-DHVTYEHDG---FVLVLNGVRESDAGVYNCVAQ 303
R+ C V P PQ+ W + L + D ++ D L++ + DAG Y A
Sbjct: 2 RLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAV 61
Query: 304 NSEGSAESVA 313
N G A
Sbjct: 62 NEAGVVSCNA 71
Score = 31.3 bits (71), Expect = 0.37
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 156 VEIPCKPDGEPLPRISWSKDEA--EFVEDRNHKIH-RTGSLRL--YNIGPQDSGLYRCTA 210
V + C+ P P+I W K+ + DR G + L N +D+G Y +A
Sbjct: 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSA 60
Query: 211 SNLLG 215
N G
Sbjct: 61 VNEAG 65
Score = 31.3 bits (71), Expect = 0.37
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 340 VEIPCKPDGEPLPRISWSKDEA--EFVEDRNHKIH-RTGSLRL--YNIGPQDSGLYRCTA 394
V + C+ P P+I W K+ + DR G + L N +D+G Y +A
Sbjct: 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSA 60
Query: 395 SNLLG 399
N G
Sbjct: 61 VNEAG 65
>gnl|CDD|143211 cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-like domain of Down
Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the
seventh immunoglobulin (Ig)-like domain of Down Syndrome
Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion
molecule expressed largely in the developing nervous
system. The gene encoding DSCAM is located at human
chromosome 21q22, the locus associated with the mental
retardation phenotype of Down Syndrome. DSCAM is
predicted to be the largest member of the IG
superfamily. It has been demonstrated that DSCAM can
mediate cation-independent homophilic intercellular
adhesion.
Length = 79
Score = 38.0 bits (88), Expect = 0.001
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 9/79 (11%)
Query: 156 VEIPCKPDGEPLPRISWSKDEAEFVEDRNH--------KIHRTGSLRLYNIGPQDSGLYR 207
V + C +G P P I W + H ++ GSL + ++ +DSG Y
Sbjct: 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYL 60
Query: 208 CTASNLLGEDVAEG-YLTV 225
C SN +G D ++ LTV
Sbjct: 61 CKVSNDVGADASKSMVLTV 79
Score = 38.0 bits (88), Expect = 0.001
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 9/79 (11%)
Query: 340 VEIPCKPDGEPLPRISWSKDEAEFVEDRNH--------KIHRTGSLRLYNIGPQDSGLYR 391
V + C +G P P I W + H ++ GSL + ++ +DSG Y
Sbjct: 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYL 60
Query: 392 CTASNLLGEDVAEG-YLTV 409
C SN +G D ++ LTV
Sbjct: 61 CKVSNDVGADASKSMVLTV 79
Score = 33.0 bits (75), Expect = 0.099
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 65 ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVL-NG------VRESDAGVYNCV 117
+ C EG+P P + W H T G + +L NG V E D+G Y C
Sbjct: 3 LNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCK 62
Query: 118 AQNSEGSAESVAMI 131
N G+ S +M+
Sbjct: 63 VSNDVGADASKSMV 76
Score = 33.0 bits (75), Expect = 0.099
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 249 ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVL-NG------VRESDAGVYNCV 301
+ C EG+P P + W H T G + +L NG V E D+G Y C
Sbjct: 3 LNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCK 62
Query: 302 AQNSEGSAESVAMI 315
N G+ S +M+
Sbjct: 63 VSNDVGADASKSMV 76
>gnl|CDD|143172 cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobulin-like) of Trk
receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth
domain of Trk receptors TrkA, TrkB and TrkC, this is an
immunoglobulin (Ig)-like domain which binds to
neurotrophin. The Trk family of receptors are tyrosine
kinase receptors. They are activated by dimerization,
leading to autophosphorylation of intracellular tyrosine
residues, and triggering the signal transduction
pathway. TrkA, TrkB, and TrkC share significant sequence
homology and domain organization. The first three
domains are leucine-rich domains. The fourth and fifth
domains are Ig-like domains playing a part in ligand
binding. TrkA, Band C mediate the trophic effects of the
neurotrophin Nerve growth factor (NGF) family. TrkA is
recognized by NGF. TrkB is recognized by brain-derived
neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC
is recognized by NT-3. NT-3 is promiscuous as in some
cell systems it activates TrkA and TrkB receptors. TrkA
is a receptor found in all major NGF targets, including
the sympathetic, trigeminal, and dorsal root ganglia,
cholinergic neurons of the basal forebrain and the
striatum. TrKB transcripts are found throughout multiple
structures of the central and peripheral nervous
systems. The TrkC gene is expressed throughout the
mammalian nervous system.
Length = 81
Score = 38.1 bits (89), Expect = 0.001
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 15/78 (19%)
Query: 69 VEGHPLPQMTWFHDGNSLDSDDHV----------TYEHDGFVLVLNGVRESDAGVYNCVA 118
V G+P P +TW+H+G L+ D++ E+ G L + + G Y VA
Sbjct: 7 VRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHG-CLQFDNPTHVNNGNYTLVA 65
Query: 119 QNSEGSAESVAMIRINGH 136
N G I+ H
Sbjct: 66 SNEYGQDSK----SISAH 79
Score = 38.1 bits (89), Expect = 0.001
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 15/78 (19%)
Query: 253 VEGHPLPQMTWFHDGNSLDSDDHV----------TYEHDGFVLVLNGVRESDAGVYNCVA 302
V G+P P +TW+H+G L+ D++ E+ G L + + G Y VA
Sbjct: 7 VRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHG-CLQFDNPTHVNNGNYTLVA 65
Query: 303 QNSEGSAESVAMIRINGH 320
N G I+ H
Sbjct: 66 SNEYGQDSK----SISAH 79
Score = 28.9 bits (65), Expect = 2.4
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
Query: 158 IPCKPDGEPLPRISWSKDEAEFVEDRNH--KIHRT--------GSLRLYNIGPQDSGLYR 207
IP G P P ++W + A E +IH G L+ N ++G Y
Sbjct: 3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYT 62
Query: 208 CTASNLLGED 217
ASN G+D
Sbjct: 63 LVASNEYGQD 72
Score = 28.9 bits (65), Expect = 2.4
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
Query: 342 IPCKPDGEPLPRISWSKDEAEFVEDRNH--KIHRT--------GSLRLYNIGPQDSGLYR 391
IP G P P ++W + A E +IH G L+ N ++G Y
Sbjct: 3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYT 62
Query: 392 CTASNLLGED 401
ASN G+D
Sbjct: 63 LVASNEYGQD 72
>gnl|CDD|143276 cd05868, Ig4_NrCAM, Fourth immunoglobulin (Ig)-like domain of NrCAM
(NgCAM-related cell adhesion molecule). Ig4_ NrCAM:
fourth immunoglobulin (Ig)-like domain of NrCAM
(NgCAM-related cell adhesion molecule). NrCAM belongs to
the L1 subfamily of cell adhesion molecules (CAMs) and
is comprised of an extracellular region having six
IG-like domains and five fibronectin type III domains, a
transmembrane region and an intracellular domain. NrCAM
is primarily expressed in the nervous system.
Length = 76
Score = 37.7 bits (87), Expect = 0.002
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 60 GSTSRITCLVEGHPLPQMTWFHDGNSLD-SDDHVTYEHDGFVLVLNGVRESDAGVYNCVA 118
G + C G+P P ++W +G ++ + + + DG ++ + V+E + VY C A
Sbjct: 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNA 60
Query: 119 QNSEG 123
N G
Sbjct: 61 SNEYG 65
Score = 37.7 bits (87), Expect = 0.002
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLD-SDDHVTYEHDGFVLVLNGVRESDAGVYNCVA 302
G + C G+P P ++W +G ++ + + + DG ++ + V+E + VY C A
Sbjct: 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNA 60
Query: 303 QNSEG 307
N G
Sbjct: 61 SNEYG 65
Score = 31.9 bits (72), Expect = 0.20
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 160 CKPDGEPLPRISWSKDEAEFV---EDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE 216
C+ +G P P ISW + D + K+ ++ + + S +Y+C ASN G
Sbjct: 8 CRANGNPKPSISWLTNGVPIEIAPTDPSRKVD-GDTIIFSKVQERSSAVYQCNASNEYGY 66
Query: 217 DVAEGYLTV 225
+A ++ V
Sbjct: 67 LLANAFVNV 75
Score = 31.9 bits (72), Expect = 0.20
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 344 CKPDGEPLPRISWSKDEAEFV---EDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE 400
C+ +G P P ISW + D + K+ ++ + + S +Y+C ASN G
Sbjct: 8 CRANGNPKPSISWLTNGVPIEIAPTDPSRKVD-GDTIIFSKVQERSSAVYQCNASNEYGY 66
Query: 401 DVAEGYLTV 409
+A ++ V
Sbjct: 67 LLANAFVNV 75
>gnl|CDD|143180 cd04979, Ig_Semaphorin_C, Immunoglobulin (Ig)-like domain of
semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like
domain in semaphorins. Semaphorins are transmembrane
protein that have important roles in a variety of
tissues. Functionally, semaphorins were initially
characterized for their importance in the development of
the nervous system and in axonal guidance. Later they
have been found to be important for the formation and
functioning of the cardiovascular, endocrine,
gastrointestinal, hepatic, immune, musculoskeletal,
renal, reproductive, and respiratory systems.
Semaphorins function through binding to their receptors
and transmembrane semaphorins also serves as receptors
themselves. Although molecular mechanism of semaphorins
is poorly understood, the Ig-like domains may involve in
ligand binding or dimerization.
Length = 89
Score = 36.6 bits (85), Expect = 0.006
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 73 PLPQMTWFHDGNSL----DSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 119
L + W G L + ++ + DG L++ V +DAGVY C +
Sbjct: 23 NLASVVWLFQGGPLQRKEEPEERLLVTEDG--LLIRSVSPADAGVYTCQSV 71
Score = 36.6 bits (85), Expect = 0.006
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 257 PLPQMTWFHDGNSL----DSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 303
L + W G L + ++ + DG L++ V +DAGVY C +
Sbjct: 23 NLASVVWLFQGGPLQRKEEPEERLLVTEDG--LLIRSVSPADAGVYTCQSV 71
Score = 35.1 bits (81), Expect = 0.018
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 153 GSSVEIPCKPDGEPLPRISW--SKDEAEFVEDRNHKIHRT--GSLRLYNIGPQDSGLYRC 208
G+SV + C P L + W + E+ ++ T G L + ++ P D+G+Y C
Sbjct: 11 GNSVFLECSPK-SNLASVVWLFQGGPLQRKEEPEERLLVTEDGLL-IRSVSPADAGVYTC 68
Query: 209 TA 210
+
Sbjct: 69 QS 70
Score = 35.1 bits (81), Expect = 0.018
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 337 GSSVEIPCKPDGEPLPRISW--SKDEAEFVEDRNHKIHRT--GSLRLYNIGPQDSGLYRC 392
G+SV + C P L + W + E+ ++ T G L + ++ P D+G+Y C
Sbjct: 11 GNSVFLECSPK-SNLASVVWLFQGGPLQRKEEPEERLLVTEDGLL-IRSVSPADAGVYTC 68
Query: 393 TA 394
+
Sbjct: 69 QS 70
>gnl|CDD|143272 cd05864, Ig2_VEGFR-2, Second immunoglobulin (Ig)-like domain of
vascular endothelial growth factor receptor 2 (VEGFR-2).
Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of
vascular endothelial growth factor receptor 2 (VEGFR-2).
The VEGFRs have an extracellular component with seven
Ig-like domains, a transmembrane segment, and an
intracellular tyrosine kinase domain interrupted by a
kinase-insert domain. VEGFRs bind VEGFs with high
affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is
a major mediator of the mitogenic, angiogenic and
microvascular permeability-enhancing effects of VEGF-A;
VEGF-A is important to the growth and maintenance of
vascular endothelial cells and to the development of new
blood- and lymphatic-vessels in physiological and
pathological states. VEGF-A also interacts with VEGFR-1,
which it binds more strongly than VEGFR-2. VEGFR-2 and
-1 may mediate a chemotactic and a survival signal in
hematopoietic stem cells or leukemia cells.
Length = 70
Score = 35.7 bits (82), Expect = 0.008
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 64 RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN 120
+I G+P P++ W+ +G + + H G L + V E DAG Y V N
Sbjct: 2 KIPVKYYGYPPPEVKWYKNGQLIVLN-HTFKR--GVHLTIYEVTEKDAGNYTVVLTN 55
Score = 35.7 bits (82), Expect = 0.008
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 248 RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN 304
+I G+P P++ W+ +G + + H G L + V E DAG Y V N
Sbjct: 2 KIPVKYYGYPPPEVKWYKNGQLIVLN-HTFKR--GVHLTIYEVTEKDAGNYTVVLTN 55
Score = 33.4 bits (76), Expect = 0.052
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 156 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 212
V+IP K G P P + W K+ V NH R L +Y + +D+G Y +N
Sbjct: 1 VKIPVKYYGYPPPEVKWYKNGQLIVL--NHTFKRGVHLTIYEVTEKDAGNYTVVLTN 55
Score = 33.4 bits (76), Expect = 0.052
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 340 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 396
V+IP K G P P + W K+ V NH R L +Y + +D+G Y +N
Sbjct: 1 VKIPVKYYGYPPPEVKWYKNGQLIVL--NHTFKRGVHLTIYEVTEKDAGNYTVVLTN 55
>gnl|CDD|143274 cd05866, Ig1_NCAM-2, First immunoglobulin (Ig)-like domain of
neural cell adhesion molecule NCAM-2. Ig1_NCAM-2:
first immunoglobulin (Ig)-like domain of neural cell
adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2
is organized similarly to NCAM , including five
N-terminal Ig-like domains and two fibronectin type III
domains. NCAM-2 is differentially expressed in the
developing and mature olfactory epithelium (OE), and may
function like NCAM, as an adhesion molecule.
Length = 92
Score = 35.8 bits (82), Expect = 0.011
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAE-FVEDRNHKIHRTG---SLRLYNIGPQDSGLYRC 208
G S C GEP I W + E V + + + G L +YN +D+G+YRC
Sbjct: 15 GESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRC 73
Query: 209 TASNLLGE 216
A++ G+
Sbjct: 74 QATDAKGQ 81
Score = 35.8 bits (82), Expect = 0.011
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAE-FVEDRNHKIHRTG---SLRLYNIGPQDSGLYRC 392
G S C GEP I W + E V + + + G L +YN +D+G+YRC
Sbjct: 15 GESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRC 73
Query: 393 TASNLLGE 400
A++ G+
Sbjct: 74 QATDAKGQ 81
Score = 34.2 bits (78), Expect = 0.038
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 58 STGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEHDGFV--LVLNGVRESDAGVY 114
S G + TC G P + W++ G + S V + +G L + DAG+Y
Sbjct: 13 SVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIY 71
Query: 115 NCVAQNSEGSAESVAMI 131
C A +++G + ++
Sbjct: 72 RCQATDAKGQTQEATVV 88
Score = 34.2 bits (78), Expect = 0.038
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 242 STGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEHDGFV--LVLNGVRESDAGVY 298
S G + TC G P + W++ G + S V + +G L + DAG+Y
Sbjct: 13 SVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIY 71
Query: 299 NCVAQNSEGSAESVAMI 315
C A +++G + ++
Sbjct: 72 RCQATDAKGQTQEATVV 88
>gnl|CDD|143267 cd05859, Ig4_PDGFR-alpha, Fourth immunoglobulin (Ig)-like domain of
platelet-derived growth factor receptor (PDGFR) alpha.
IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like
domain of platelet-derived growth factor receptor
(PDGFR) alpha. PDGF is a potent mitogen for connective
tissue cells. PDGF-stimulated processes are mediated by
three different PDGFs (PDGF-A,-B, and C). PDGFR alpha
binds to all three PDGFs, whereas the PDGFR beta (not
included in this group) binds only to PDGF-B. PDGF alpha
is organized as an extracellular component having five
Ig-like domains, a transmembrane segment, and a
cytoplasmic portion having protein tyrosine kinase
activity. In mice, PDGFR alpha and PDGFR beta are
essential for normal development.
Length = 101
Score = 36.0 bits (83), Expect = 0.012
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 69 VEGHPLPQMTWFHDGNSLDSD------DHVTYEHDGFVLVLNGVR--ESDAGVYNCVAQN 120
VE +P PQ+ W D +L + + +V L +R E D+G+Y +AQN
Sbjct: 27 VEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQN 86
Score = 36.0 bits (83), Expect = 0.012
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 253 VEGHPLPQMTWFHDGNSLDSD------DHVTYEHDGFVLVLNGVR--ESDAGVYNCVAQN 304
VE +P PQ+ W D +L + + +V L +R E D+G+Y +AQN
Sbjct: 27 VEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQN 86
>gnl|CDD|143263 cd05855, Ig_TrkB_d5, Fifth domain (immunoglobulin-like) of Trk
receptor TrkB. TrkB_d5: the fifth domain of Trk
receptor TrkB, this is an immunoglobulin (Ig)-like
domain which binds to neurotrophin. The Trk family of
receptors are tyrosine kinase receptors, which mediate
the trophic effects of the neurotrophin Nerve growth
factor (NGF) family. The Trks are activated by
dimerization, leading to autophosphorylation of
intracellular tyrosine residues, and triggering the
signal transduction pathway. TrkB shares significant
sequence homology and domain organization with TrkA, and
TrkC. The first three domains are leucine-rich domains.
The fourth and fifth domains are Ig-like domains playing
a part in ligand binding. TrKB is recognized by
brain-derived neurotrophic factor (BDNF) and
neurotrophin (NT)-4. In some cell systems NT-3 can
activate TrkA and TrkB receptors. TrKB transcripts are
found throughout multiple structures of the central and
peripheral nervous systems.
Length = 79
Score = 35.2 bits (81), Expect = 0.014
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 69 VEGHPLPQMTWFHDGNSLDSDDHV--------TYEHDGFVLVLNGVRESDAGVYNCVAQN 120
V+G+P P + WFH+G L+ +++ E+ G L L+ + G+Y VA+N
Sbjct: 7 VKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHG-CLQLDNPTHLNNGIYTLVAKN 65
Query: 121 SEGSAE 126
G E
Sbjct: 66 EYGEDE 71
Score = 35.2 bits (81), Expect = 0.014
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 253 VEGHPLPQMTWFHDGNSLDSDDHV--------TYEHDGFVLVLNGVRESDAGVYNCVAQN 304
V+G+P P + WFH+G L+ +++ E+ G L L+ + G+Y VA+N
Sbjct: 7 VKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHG-CLQLDNPTHLNNGIYTLVAKN 65
Query: 305 SEGSAE 310
G E
Sbjct: 66 EYGEDE 71
Score = 30.2 bits (68), Expect = 0.97
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 158 IPCKPDGEPLPRISWSKD-----EAEFVEDRNHKIHRT---GSLRLYNIGPQDSGLYRCT 209
IP G P P + W + E+E++ + H I+ T G L+L N ++G+Y
Sbjct: 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLV 62
Query: 210 ASNLLGED 217
A N GED
Sbjct: 63 AKNEYGED 70
Score = 30.2 bits (68), Expect = 0.97
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 342 IPCKPDGEPLPRISWSKD-----EAEFVEDRNHKIHRT---GSLRLYNIGPQDSGLYRCT 393
IP G P P + W + E+E++ + H I+ T G L+L N ++G+Y
Sbjct: 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLV 62
Query: 394 ASNLLGED 401
A N GED
Sbjct: 63 AKNEYGED 70
>gnl|CDD|143191 cd05714, Ig_CSPGs_LP, Immunoglobulin (Ig)-like domain of
chondroitin sulfate proteoglycans (CSPGs), human
cartilage link protein (LP) and similar proteins.
Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to
that found in chondroitin sulfate proteoglycans (CSPGs)
and human cartilage link protein (LP). Included in this
group are the CSPGs aggrecan, versican, and neurocan. In
CSPGs this Ig-like domain is followed by hyaluronan
(HA)-binding tandem repeats, and a C-terminal region
with epidermal growth factor-like, lectin-like, and
complement regulatory protein-like domains. Separating
these N- and C-terminal regions is a nonhomologous
glycosaminoglycan attachment region. In cartilage,
aggrecan forms cartilage link protein stabilized
aggregates with hyaluronan (HA). These aggregates
contribute to the tissue's load bearing properties.
Aggrecan and versican have a wide distribution in
connective tissue and extracellular matrices. Neurocan
is localized almost exclusively in nervous tissue.
Aggregates having other CSPGs substituting for aggrecan
may contribute to the structural integrity of many
different tissues. There is considerable evidence that
HA-binding CSPGs are involved in developmental processes
in the central nervous system. Members of the vertebrate
HPLN (hyaluronan/HA and proteoglycan binding link)
protein family are physically linked adjacent to CSPG
genes.
Length = 106
Score = 35.7 bits (83), Expect = 0.019
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 28/103 (27%)
Query: 153 GSSVEIPCKPDGEPL------PRISWSK---DEAEFVE-----DRNHKIHRTG------- 191
G +V +PC+ EP PRI W+K D A+ V+ K++ +G
Sbjct: 2 GGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLY 61
Query: 192 -------SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 227
SL + ++ +DSG YRC + + ++ L V G
Sbjct: 62 PADPGDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEVRG 104
Score = 35.7 bits (83), Expect = 0.019
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 28/103 (27%)
Query: 337 GSSVEIPCKPDGEPL------PRISWSK---DEAEFVE-----DRNHKIHRTG------- 375
G +V +PC+ EP PRI W+K D A+ V+ K++ +G
Sbjct: 2 GGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLY 61
Query: 376 -------SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
SL + ++ +DSG YRC + + ++ L V G
Sbjct: 62 PADPGDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEVRG 104
>gnl|CDD|143234 cd05757, Ig2_IL1R_like, Second immunoglobulin (Ig)-like domain of
interleukin-1 receptor (IL1R) and similar proteins.
Ig2_IL1R_like: domain similar to the second
immunoglobulin (Ig)-like domain of interleukin-1
receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines
which participate in the regulation of inflammation,
immune responses, and hematopoiesis. These cytokines
bind to the IL-1 receptor type 1 (IL1R1), which is
activated on additional association with an accessory
protein, IL1RAP. IL-1 also binds a second receptor
designated type II (IL1R2). Mature IL1R1 consists of
three IG-like domains, a transmembrane domain, and a
large cytoplasmic domain. Mature IL1R2 is organized
similarly except that it has a short cytoplasmic domain.
The latter does not initiate signal transduction. A
naturally occurring cytokine IL-1RA (IL-1 receptor
antagonist) is widely expressed and binds to IL-1
receptors, inhibiting the binding of IL-1 alpha and IL-1
beta. This group also contains ILIR-like 1 (IL1R1L)
which maps to the same chromosomal location as IL1R1 and
IL1R2.
Length = 92
Score = 34.6 bits (80), Expect = 0.032
Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 17/71 (23%)
Query: 59 TGSTSRITCLVEGHP----------LPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRE 108
+ +I C P LP + W+ D L+ D + +L+ N V E
Sbjct: 9 STKGGKIVC-----PDLDDFKNENTLPPVQWYKDCKLLE-GDRKRFVKGSKLLIQN-VTE 61
Query: 109 SDAGVYNCVAQ 119
DAG Y C
Sbjct: 62 EDAGNYTCKLT 72
Score = 34.6 bits (80), Expect = 0.032
Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 17/71 (23%)
Query: 243 TGSTSRITCLVEGHP----------LPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRE 292
+ +I C P LP + W+ D L+ D + +L+ N V E
Sbjct: 9 STKGGKIVC-----PDLDDFKNENTLPPVQWYKDCKLLE-GDRKRFVKGSKLLIQN-VTE 61
Query: 293 SDAGVYNCVAQ 303
DAG Y C
Sbjct: 62 EDAGNYTCKLT 72
Score = 33.4 bits (77), Expect = 0.091
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 167 LPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTAS 211
LP + W KD + +E + + L + N+ +D+G Y C +
Sbjct: 29 LPPVQWYKD-CKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLT 72
Score = 33.4 bits (77), Expect = 0.091
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 351 LPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTAS 395
LP + W KD + +E + + L + N+ +D+G Y C +
Sbjct: 29 LPPVQWYKD-CKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLT 72
>gnl|CDD|143231 cd05754, Ig3_Perlecan_like, Third immunoglobulin (Ig)-like domain
found in Perlecan and similar proteins.
Ig3_Perlecan_like: domain similar to the third
immunoglobulin (Ig)-like domain found in Perlecan.
Perlecan is a large multi-domain heparin sulfate
proteoglycan, important in tissue development and
organogenesis. Perlecan can be represented as 5 major
portions; its fourth major portion (domain IV) is a
tandem repeat of immunoglobulin-like domains (Ig2-Ig15),
which can vary in size due to alternative splicing.
Perlecan binds many cellular and extracellular ligands.
Its domain IV region has many binding sites. Some of
these have been mapped at the level of individual
Ig-like domains, including a site restricted to the Ig5
domain for heparin/sulfatide, a site restricted to the
Ig3 domain for nidogen-1 and nidogen-2, a site
restricted to Ig4-5 for fibronectin, and sites
restricted to Ig2 and to Ig13-15 for fibulin-2.
Length = 85
Score = 33.7 bits (77), Expect = 0.055
Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 12/91 (13%)
Query: 40 VTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGH-PLPQMTWFHDGNSLDSDDHVTYEHDG 98
VTV P RP G+ C + P + W G L S
Sbjct: 3 VTVEEPRSQEVRP-------GADVSFICRAKSKSPAYTLVWTRVGGGLPSRAM----DFN 51
Query: 99 FVLVLNGVRESDAGVYNCVAQNSEGSAESVA 129
+L + V+ SDAG Y C N + E+ A
Sbjct: 52 GILTIRNVQLSDAGTYVCTGSNMLDTDEATA 82
Score = 33.3 bits (76), Expect = 0.080
Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 5/84 (5%)
Query: 231 IFIQRPVSTTYSTGSTSRITCLVEGH-PLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNG 289
+ ++ P S G+ C + P + W G L S +L +
Sbjct: 3 VTVEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRAM----DFNGILTIRN 58
Query: 290 VRESDAGVYNCVAQNSEGSAESVA 313
V+ SDAG Y C N + E+ A
Sbjct: 59 VQLSDAGTYVCTGSNMLDTDEATA 82
Score = 31.4 bits (71), Expect = 0.43
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 142 VVKPFDMRAPAGSSVEIPCKPDGE-PLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGP 200
V +P G+ V C+ + P + W++ + R + G L + N+
Sbjct: 5 VEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGG-LPSRAMDFN--GILTIRNVQL 61
Query: 201 QDSGLYRCTASNLLGEDVAEGYLTV 225
D+G Y CT SN+L D E T+
Sbjct: 62 SDAGTYVCTGSNML--DTDEATATL 84
Score = 31.4 bits (71), Expect = 0.43
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 326 VVKPFDMRAPAGSSVEIPCKPDGE-PLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGP 384
V +P G+ V C+ + P + W++ + R + G L + N+
Sbjct: 5 VEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGG-LPSRAMDFN--GILTIRNVQL 61
Query: 385 QDSGLYRCTASNLLGEDVAEGYLTV 409
D+G Y CT SN+L D E T+
Sbjct: 62 SDAGTYVCTGSNML--DTDEATATL 84
>gnl|CDD|143193 cd05716, Ig_pIgR, Immunoglobulin (Ig)-like domain in the polymeric
Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like
domain in the polymeric Ig receptor (pIgR). pIgR
delivers dimeric IgA and pentameric IgM to mucosal
secretions. Polymeric immunoglobulin (pIgs) are the
first defense against pathogens and toxins. IgA and IgM
can form polymers via an 18-residue extension at their
c-termini referred to as the tailpiece. pIgR transports
pIgs across mucosal epithelia into mucosal secretions.
Human pIgR is a glycosylated type I transmembrane
protein, comprised of a 620 residue extracellular
region, a 23 residue transmembrane region, and a 103
residue cytoplasmic tail. The extracellular region
contains five domains that share sequence similarity
with Ig variable (v) regions.
Length = 98
Score = 33.6 bits (77), Expect = 0.094
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 99 FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMI 131
F + LN +R+ DAG Y C + ++++
Sbjct: 64 FTVTLNQLRKEDAGWYWCGVGDDGDQGLTLSVT 96
Score = 33.6 bits (77), Expect = 0.094
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 283 FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMI 315
F + LN +R+ DAG Y C + ++++
Sbjct: 64 FTVTLNQLRKEDAGWYWCGVGDDGDQGLTLSVT 96
>gnl|CDD|143285 cd05877, Ig_LP_like, Immunoglobulin (Ig)-like domain of human
cartilage link protein (LP). Ig_LP_like: immunoglobulin
(Ig)-like domain similar to that that found in human
cartilage link protein (LP). In cartilage,
chondroitin-keratan sulfate proteoglycan (CSPG),
aggrecan, forms cartilage link protein stabilized
aggregates with hyaluronan (HA). These aggregates
contribute to the tissue's load bearing properties.
Aggregates having other CSPGs substituting for aggrecan
may contribute to the structural integrity of many
different tissues. Members of the vertebrate HPLN
(hyaluronan/HA and proteoglycan binding link) protein
family are physically linked adjacent to CSPG genes.
Length = 106
Score = 33.5 bits (77), Expect = 0.100
Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 28/103 (27%)
Query: 153 GSSVEIPCKPDGEPLP------RISWSK---DEAEFVE-----DRNHK----------IH 188
G +V +PC+ EP R+ W+K D + + HK +
Sbjct: 2 GGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLR 61
Query: 189 RTG----SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 227
R SL + ++ +D G YRC + L ++ L + G
Sbjct: 62 RAHDLDASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRLRG 104
Score = 33.5 bits (77), Expect = 0.100
Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 28/103 (27%)
Query: 337 GSSVEIPCKPDGEPLP------RISWSK---DEAEFVE-----DRNHK----------IH 372
G +V +PC+ EP R+ W+K D + + HK +
Sbjct: 2 GGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLR 61
Query: 373 RTG----SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
R SL + ++ +D G YRC + L ++ L + G
Sbjct: 62 RAHDLDASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRLRG 104
>gnl|CDD|177921 PLN02283, PLN02283, alpha-dioxygenase.
Length = 633
Score = 35.9 bits (83), Expect = 0.13
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 573 LDLAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYG 627
+D+AA+ I R R+ G+ YN +R + + +EDL D + L+ +YG
Sbjct: 471 VDMAALEIYRDRERGVARYNEFRRNLLMIPISKWEDLT---DDEEAIEVLREVYG 522
>gnl|CDD|143302 cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) domain of cardiac
myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the
C5 immunoglobulin (Ig) domain of cardiac myosin binding
protein C (MyBP-C). MyBP_C consists of repeated domains,
Ig and fibronectin type 3, and various linkers. Three
isoforms of MYBP_C exist and are included in this group:
cardiac(c), and fast and slow skeletal muscle (s)
MyBP_C. cMYBP_C has insertions between and inside
domains and an additional cardiac-specific Ig domain at
the N-terminus. For cMYBP_C an interaction has been
demonstrated between this C5 domain and the Ig C8
domain.
Length = 86
Score = 32.5 bits (74), Expect = 0.13
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 152 AGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH-KIHRTGSLRLYNIGP---QDSGLYR 207
AG+ + + GEP P ++WS+ + F E ++ L + I +D G+Y
Sbjct: 9 AGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYT 68
Query: 208 CTASNLLGEDVAEGYLTV 225
T +N +GED A ++ V
Sbjct: 69 ITVTNPVGEDHASLFVKV 86
Score = 32.5 bits (74), Expect = 0.13
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 336 AGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH-KIHRTGSLRLYNIGP---QDSGLYR 391
AG+ + + GEP P ++WS+ + F E ++ L + I +D G+Y
Sbjct: 9 AGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYT 68
Query: 392 CTASNLLGEDVAEGYLTV 409
T +N +GED A ++ V
Sbjct: 69 ITVTNPVGEDHASLFVKV 86
Score = 32.5 bits (74), Expect = 0.14
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV 42
+ + + VI G +RE G Y+ NP G L V V
Sbjct: 45 VESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFVKV 86
>gnl|CDD|143271 cd05863, Ig2_VEGFR-3, Second immunoglobulin (Ig)-like domain of
vascular endothelial growth factor receptor 3 (VEGFR-3).
Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of
vascular endothelial growth factor receptor 3 (VEGFR-3).
The VEGFRs have an extracellular component with seven
Ig-like domains, a transmembrane segment, and an
intracellular tyrosine kinase domain interrupted by a
kinase-insert domain. VEGFRs bind VEGFs with high
affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds
two members of the VEGF family (VEGF-C and -D) and is
involved in tumor angiogenesis and growth.
Length = 67
Score = 32.2 bits (73), Expect = 0.15
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 64 RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNS 121
++ V +P P+ W+ DG + + +H L + V E+ AG Y V NS
Sbjct: 2 KLPVKVAAYPPPEFQWYKDGKLI------SGKHSQHSLQIKDVTEASAGTYTLVLWNS 53
Score = 32.2 bits (73), Expect = 0.15
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 248 RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNS 305
++ V +P P+ W+ DG + + +H L + V E+ AG Y V NS
Sbjct: 2 KLPVKVAAYPPPEFQWYKDGKLI------SGKHSQHSLQIKDVTEASAGTYTLVLWNS 53
>gnl|CDD|165149 PHA02785, PHA02785, IL-beta-binding protein; Provisional.
Length = 326
Score = 35.0 bits (80), Expect = 0.16
Identities = 60/282 (21%), Positives = 104/282 (36%), Gaps = 63/282 (22%)
Query: 64 RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN--- 120
+I L G+ + + W G D+D + ++ +L+LN +SD+G+Y C+ +N
Sbjct: 50 QINTLSSGYNILDILWEKRG--ADNDRIIPIDNGSNMLILNPT-QSDSGIYICITKNETY 106
Query: 121 -------------SEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPL 167
SE + + ++ +I R+ +V P ++ A S+V G
Sbjct: 107 CDMMSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCP-NINAFIASNVNADIIWSGHRR 165
Query: 168 PRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 227
R ++ K G + + ++ D+G Y C + G+ V
Sbjct: 166 LR------------NKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKL 213
Query: 228 A------PPIFIQRPVSTTYSTGSTSRITCLVEGHPL---PQMTWFHDGNSLDSDDHVTY 278
PP +Q P S GS I C V P + W +G + DD
Sbjct: 214 EVRDRIIPPT-MQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDE--- 269
Query: 279 EHDGFVLV------------------LNGVRESDAGVYNCVA 302
+ DG + V +N V+E DA + C+A
Sbjct: 270 DGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMA 311
Score = 30.0 bits (67), Expect = 5.4
Identities = 35/142 (24%), Positives = 51/142 (35%), Gaps = 30/142 (21%)
Query: 4 RRSSTELVISGVQREHGGRYSCV-----AGNPAGVYR-GDLHVTVNAPPIFIQRPVSTTY 57
+R+ + I V++ G Y+CV V R L V P +Q P
Sbjct: 173 QRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVT 232
Query: 58 STGSTSRITCLVEGHPL---PQMTWFHDGNSLDSDDHVTYEHDGFVLV------------ 102
S GS I C V P + W +G + DD + DG + V
Sbjct: 233 SIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDE---DGDGRISVANKIYTTDKRRV 289
Query: 103 ------LNGVRESDAGVYNCVA 118
+N V+E DA + C+A
Sbjct: 290 ITSRLNINPVKEEDATTFTCMA 311
>gnl|CDD|143167 cd00099, IgV, Immunoglobulin variable domain (IgV). IgV:
Immunoglobulin variable domain (IgV). Members of the IgV
family are components of immunoglobulin (Ig) and T cell
receptors. The basic structure of Ig molecules is a
tetramer of two light chains and two heavy chains linked
by disulfide bonds. In Ig, each chain is composed of one
variable domain (IgV) and one or more constant domains
(IgC); these names reflect the fact that the variability
in sequences is higher in the variable domain than in
the constant domain. Within the variable domain, there
are regions of even more variability called the
hypervariable or complementarity-determining regions
(CDRs) which are responsible for antigen binding. A
predominant feature of most Ig domains is the disulfide
bridge connecting 2 beta-sheets with a tryptophan
residue packed against the disulfide bond.
Length = 105
Score = 32.3 bits (74), Expect = 0.23
Identities = 17/85 (20%), Positives = 26/85 (30%), Gaps = 23/85 (27%)
Query: 150 APAGSSVEIPCKPDGE-PLPRISW------------------SKDEAEFVEDR----NHK 186
G SV + C G I W A V+ R
Sbjct: 3 VSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDS 62
Query: 187 IHRTGSLRLYNIGPQDSGLYRCTAS 211
+ +L + ++ P+DS +Y C S
Sbjct: 63 SKSSFTLTISSLQPEDSAVYYCAVS 87
Score = 32.3 bits (74), Expect = 0.23
Identities = 17/85 (20%), Positives = 26/85 (30%), Gaps = 23/85 (27%)
Query: 334 APAGSSVEIPCKPDGE-PLPRISW------------------SKDEAEFVEDR----NHK 370
G SV + C G I W A V+ R
Sbjct: 3 VSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDS 62
Query: 371 IHRTGSLRLYNIGPQDSGLYRCTAS 395
+ +L + ++ P+DS +Y C S
Sbjct: 63 SKSSFTLTISSLQPEDSAVYYCAVS 87
>gnl|CDD|143273 cd05865, Ig1_NCAM-1, First immunoglobulin (Ig)-like domain of
neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first
immunoglobulin (Ig)-like domain of neural cell adhesion
molecule NCAM-1. NCAM-1 plays important roles in the
development and regeneration of the central nervous
system, in synaptogenesis and neural migration. NCAM
mediates cell-cell and cell-substratum recognition and
adhesion via homophilic (NCAM-NCAM), and heterophilic
(NCAM-nonNCAM), interactions. NCAM is expressed as three
major isoforms having different intracellular
extensions. The extracellular portion of NCAM has five
N-terminal Ig-like domains and two fibronectin type III
domains. The double zipper adhesion complex model for
NCAM homophilic binding involves the Ig1, Ig2, and Ig3
domains. By this model, Ig1 and Ig2 mediate dimerization
of NCAM molecules situated on the same cell surface (cis
interactions), and Ig3 domains mediate interactions
between NCAM molecules expressed on the surface of
opposing cells (trans interactions), through binding to
the Ig1 and Ig2 domains. The adhesive ability of NCAM is
modulated by the addition of polysialic acid chains to
the fifth Ig-like domain.
Length = 96
Score = 32.3 bits (73), Expect = 0.24
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 153 GSSVEIPCKPDGEPLPR-ISWSKDEAEFVEDRNHKIH------RTGSLRLYNIGPQDSGL 205
G S C+ GE + ISW E + +I + +L +YN D+G+
Sbjct: 15 GESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGI 74
Query: 206 YRCTASNLLGEDVAEGYLTV 225
Y+C SN + +E + V
Sbjct: 75 YKCVVSNEDEGE-SEATVNV 93
Score = 32.3 bits (73), Expect = 0.24
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 337 GSSVEIPCKPDGEPLPR-ISWSKDEAEFVEDRNHKIH------RTGSLRLYNIGPQDSGL 389
G S C+ GE + ISW E + +I + +L +YN D+G+
Sbjct: 15 GESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGI 74
Query: 390 YRCTASNLLGEDVAEGYLTV 409
Y+C SN + +E + V
Sbjct: 75 YKCVVSNEDEGE-SEATVNV 93
>gnl|CDD|143250 cd05773, Ig8_hNephrin_like, Eighth immunoglobulin-like domain of
nephrin. Ig8_hNephrin_like: domain similar to the
eighth immunoglobulin-like domain in human nephrin.
Nephrin is an integral component of the slit diaphragm,
and is a central component of the glomerular
ultrafilter. Nephrin plays a structural role, and has a
role in signaling. Nephrin is a transmembrane protein
having a short intracellular portion, and an
extracellular portion comprised of eight Ig-like
domains, and one fibronectin type III-like domain. The
extracellular portions of nephrin, from neighboring foot
processes of separate podocyte cells, may interact with
each other, and in association with other components of
the slit diaphragm, form a porous molecular sieve within
the slit pore. The intracellular portion of nephrin is
associated with linker proteins, which connect nephrin
to the actin cytoskeleton. The intracellular portion is
tyrosine phosphorylated, and mediates signaling from the
slit diaphragm into the podocytes.
Length = 109
Score = 32.6 bits (74), Expect = 0.25
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Query: 154 SSVEIPCKPDGEPLPRISWSKD-------EAEFVEDRNHK--IHRTGSLRLYNI-GPQDS 203
S + C+ G P + W+K+ + E H +H T L + N+ D
Sbjct: 24 SDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVH-TSILTIINVSAALDY 82
Query: 204 GLYRCTASNLLGEDVAEGYLTVTGAP 229
L+ CTA N LGED + L T P
Sbjct: 83 ALFTCTAHNSLGEDSLDIQLVSTSRP 108
Score = 32.2 bits (73), Expect = 0.35
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 11/74 (14%)
Query: 338 SSVEIPCKPDGEPLPRISWSKD-------EAEFVEDRNHK--IHRTGSLRLYNI-GPQDS 387
S + C+ G P + W+K+ + E H +H T L + N+ D
Sbjct: 24 SDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVH-TSILTIINVSAALDY 82
Query: 388 GLYRCTASNLLGED 401
L+ CTA N LGED
Sbjct: 83 ALFTCTAHNSLGED 96
Score = 29.9 bits (67), Expect = 2.0
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 8/82 (9%)
Query: 51 RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD--------HVTYEHDGFVLV 102
R V++ S + + C +G P Q W +G LD + H H + +
Sbjct: 14 RKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTI 73
Query: 103 LNGVRESDAGVYNCVAQNSEGS 124
+N D ++ C A NS G
Sbjct: 74 INVSAALDYALFTCTAHNSLGE 95
Score = 29.9 bits (67), Expect = 2.0
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 8/82 (9%)
Query: 235 RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD--------HVTYEHDGFVLV 286
R V++ S + + C +G P Q W +G LD + H H + +
Sbjct: 14 RKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTI 73
Query: 287 LNGVRESDAGVYNCVAQNSEGS 308
+N D ++ C A NS G
Sbjct: 74 INVSAALDYALFTCTAHNSLGE 95
>gnl|CDD|143283 cd05875, Ig6_hNeurofascin_like, Sixth immunoglobulin (Ig)-like
domain of human neurofascin (NF).
Ig6_hNeurofascin_like: the sixth immunoglobulin
(Ig)-like domain of human neurofascin (NF). NF belongs
to the L1 subfamily of cell adhesion molecules (CAMs)
and is comprised of an extracellular region having six
Ig-like domains and five fibronectin type III domains, a
transmembrane region, and a cytoplasmic domain. NF has
many alternatively spliced isoforms having different
temporal expression patterns during development. NF
participates in axon subcellular targeting and synapse
formation, however little is known of the functions of
the different isoforms.
Length = 77
Score = 31.5 bits (71), Expect = 0.26
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 158 IPCKPDGEPLPRISWSKDEAEFVEDRNHKI---HRTGSLRLYNIG---PQD-SGLYRCTA 210
I C+ G P+P W+++ F ++ ++ R+G+L + G P+D G Y+C A
Sbjct: 3 IECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFA 62
Query: 211 SNLLG 215
N LG
Sbjct: 63 RNNLG 67
Score = 31.5 bits (71), Expect = 0.26
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 342 IPCKPDGEPLPRISWSKDEAEFVEDRNHKI---HRTGSLRLYNIG---PQD-SGLYRCTA 394
I C+ G P+P W+++ F ++ ++ R+G+L + G P+D G Y+C A
Sbjct: 3 IECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFA 62
Query: 395 SNLLG 399
N LG
Sbjct: 63 RNNLG 67
Score = 31.5 bits (71), Expect = 0.34
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 65 ITCLVEGHPLPQMTWFHDGN--SLDSDDHVTYEHDGFVLVLN----GVRESDAGVYNCVA 118
I C +G+P+P W +G ++ D V+ LV++ G E G Y C A
Sbjct: 3 IECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFA 62
Query: 119 QNSEGSAES 127
+N+ G+A S
Sbjct: 63 RNNLGTALS 71
Score = 31.5 bits (71), Expect = 0.34
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 249 ITCLVEGHPLPQMTWFHDGN--SLDSDDHVTYEHDGFVLVLN----GVRESDAGVYNCVA 302
I C +G+P+P W +G ++ D V+ LV++ G E G Y C A
Sbjct: 3 IECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFA 62
Query: 303 QNSEGSAES 311
+N+ G+A S
Sbjct: 63 RNNLGTALS 71
>gnl|CDD|219514 pfam07686, V-set, Immunoglobulin V-set domain. This domain is
found in antibodies as well as neural protein P0 and
CTL4 amongst others.
Length = 114
Score = 32.2 bits (73), Expect = 0.32
Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 24/96 (25%)
Query: 50 QRPVSTTYSTGSTSRITCLVE-GHPLPQMTWF-------------------HDGNSLDSD 89
Q P T + G + + C + W+ +
Sbjct: 6 QPPRPVTVAEGGSVTLPCSFSSSSGSTSVYWYKQPLGKGPELIIHYVTSTPNGKVGPRFK 65
Query: 90 DHVTYEHDG----FVLVLNGVRESDAGVYNCVAQNS 121
VT +G F L ++ +R SD+G Y C N
Sbjct: 66 GRVTLSGNGSKNDFSLTISNLRLSDSGTYTCAVSNP 101
Score = 32.2 bits (73), Expect = 0.32
Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 24/96 (25%)
Query: 234 QRPVSTTYSTGSTSRITCLVE-GHPLPQMTWF-------------------HDGNSLDSD 273
Q P T + G + + C + W+ +
Sbjct: 6 QPPRPVTVAEGGSVTLPCSFSSSSGSTSVYWYKQPLGKGPELIIHYVTSTPNGKVGPRFK 65
Query: 274 DHVTYEHDG----FVLVLNGVRESDAGVYNCVAQNS 305
VT +G F L ++ +R SD+G Y C N
Sbjct: 66 GRVTLSGNGSKNDFSLTISNLRLSDSGTYTCAVSNP 101
Score = 31.0 bits (70), Expect = 0.89
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGD---LHV 40
+ ++ L IS ++ G Y+C NP + G L V
Sbjct: 72 GNGSKNDFSLTISNLRLSDSGTYTCAVSNPNELVFGAGTRLTV 114
>gnl|CDD|143281 cd05873, Ig_Sema4D_like, Immunoglobulin (Ig)-like domain of the
class IV semaphorin Sema4D. Ig_Sema4D_like;
Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a
Class IV semaphorin. Semaphorins are classified based on
structural features additional to the Sema domain.
Sema4D has extracellular Sema and Ig domains, a
transmembrane domain, and a short cytoplasmic domain.
Sema4D plays a part in the development of GABAergic
synapses. Sema4D in addition is an immune semaphorin. It
is abundant on resting T cells; its expression is weak
on resting B cells and antigen presenting cells (APCs),
but is upregulated by various stimuli. The receptor used
by Sema4D in the immune system is CD72. Sem4D enhances
the activation of B cells and DCs through binding CD72,
perhaps by reducing CD72s inhibitory signals. The
receptor used by Sema4D in the non-lymphatic tissues is
plexin-B1. Sem4D is anchored to the cell surface but its
extracellular domain can be released from the cell
surface by a metalloprotease-dependent process. Sem4D
may mediate its effects in its membrane bound form,
and/or its cleaved form.
Length = 87
Score = 31.7 bits (72), Expect = 0.33
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 52 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL-DSDDHVTYEHDGFVLVLNGVRESD 110
P T+ G+ + + C L ++ W DG L DG +L+ N E+D
Sbjct: 3 PRQRTFKLGNNAELKC-SPKSNLARVVWKFDGKVLTPESAKYLLYRDG-LLIFN-ASEAD 59
Query: 111 AGVYNCVA 118
AG Y C++
Sbjct: 60 AGRYQCLS 67
Score = 31.7 bits (72), Expect = 0.33
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 236 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL-DSDDHVTYEHDGFVLVLNGVRESD 294
P T+ G+ + + C L ++ W DG L DG +L+ N E+D
Sbjct: 3 PRQRTFKLGNNAELKC-SPKSNLARVVWKFDGKVLTPESAKYLLYRDG-LLIFN-ASEAD 59
Query: 295 AGVYNCVA 302
AG Y C++
Sbjct: 60 AGRYQCLS 67
Score = 30.9 bits (70), Expect = 0.48
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEF-VEDRNHKIHRTGSLRLYNIGPQDSGLYRC 208
G++ E+ C P L R+ W D E + ++R G L ++N D+G Y+C
Sbjct: 11 GNNAELKCSPKSN-LARVVWKFDGKVLTPESAKYLLYRDGLL-IFNASEADAGRYQC 65
Score = 30.9 bits (70), Expect = 0.48
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEF-VEDRNHKIHRTGSLRLYNIGPQDSGLYRC 392
G++ E+ C P L R+ W D E + ++R G L ++N D+G Y+C
Sbjct: 11 GNNAELKCSPKSN-LARVVWKFDGKVLTPESAKYLLYRDGLL-IFNASEADAGRYQC 65
>gnl|CDD|143175 cd04974, Ig3_FGFR, Third immunoglobulin (Ig)-like domain of
fibroblast growth factor receptor (FGFR). Ig3_FGFR:
third immunoglobulin (Ig)-like domain of fibroblast
growth factor receptor (FGFR). Fibroblast growth factors
(FGFs) participate in morphogenesis, development,
angiogenesis, and wound healing. These FGF-stimulated
processes are mediated by four FGFR tyrosine kinases
(FGRF1-4). FGFRs are comprised of an extracellular
portion consisting of three Ig-like domains, a
transmembrane helix, and a cytoplasmic portion having
protein tyrosine kinase activity. The highly conserved
Ig-like domains 2 and 3, and the linker region between
D2 and D3 define a general binding site for FGFs.
Length = 90
Score = 31.6 bits (72), Expect = 0.35
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 93 TYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 134
T +++ VL L V DAG Y C+A NS G + A + +
Sbjct: 49 TTDNESEVLYLRNVSFDDAGEYTCLAGNSIGPSHHSAWLTVL 90
Score = 31.6 bits (72), Expect = 0.35
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 277 TYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 318
T +++ VL L V DAG Y C+A NS G + A + +
Sbjct: 49 TTDNESEVLYLRNVSFDDAGEYTCLAGNSIGPSHHSAWLTVL 90
>gnl|CDD|143280 cd05872, Ig_Sema4B_like, Immunoglobulin (Ig)-like domain of the
class IV semaphorin Sema4B. Ig_Sema4B_like;
Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B
is a Class IV semaphorin. Semaphorins are classified
based on structural features additional to the Sema
domain. Sema4B has extracellular Sema and Ig domains, a
transmembrane domain and a short cytoplasmic domain.
Sema4B has been shown to preferentially regulate the
development of the postsynaptic specialization at the
glutamatergic synapses. This cytoplasmic domain includes
a PDZ-binding motif upon which the synaptic localization
of Sem4B is dependent. Sema4B is a ligand of CLCP1,
CLCP1 was identified in an expression profiling
analysis, which compared a highly metastic lung cancer
subline with its low metastic parental line. Sema4B was
shown to promote CLCP1 endocytosis, and their
interaction is a potential target for therapeutic
intervention of metastasis.
Length = 85
Score = 31.2 bits (71), Expect = 0.37
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 74 LPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVA 129
L W +G L++ DG L++ +G Y C ++ EG + VA
Sbjct: 24 LASPVWLFNGTPLNAQFSYRVGTDG--LLILVTSPEHSGTYRCYSE-EEGFQQLVA 76
Score = 31.2 bits (71), Expect = 0.37
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 258 LPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVA 313
L W +G L++ DG L++ +G Y C ++ EG + VA
Sbjct: 24 LASPVWLFNGTPLNAQFSYRVGTDG--LLILVTSPEHSGTYRCYSE-EEGFQQLVA 76
>gnl|CDD|143171 cd04970, Ig6_Contactin_like, Sixth Ig domain of contactin.
Ig6_Contactin_like: Sixth Ig domain of contactins.
Contactins are neural cell adhesion molecules and are
comprised of six Ig domains followed by four
fibronectin type III(FnIII) domains anchored to the
membrane by glycosylphosphatidylinositol. The first
four Ig domains form the intermolecular binding
fragment, which arranges as a compact U-shaped module
via contacts between Ig domains 1 and 4, and between Ig
domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play
a part in the neuronal processes of neurite outgrowth,
axon guidance and fasciculation, and neuronal
migration. This group also includes contactin-1 and
contactin-5. The different contactins show different
expression patterns in the central nervous system.
During development and in adulthood, contactin-2 is
transiently expressed in subsets of central and
peripheral neurons. Contactin-5 is expressed
specifically in the rat postnatal nervous system,
peaking at about 3 weeks postnatal, and a lack of
contactin-5 (NB-2) results in an impairment of neur
onal act ivity in the rat auditory system. Contactin-5
is highly expressed in the adult human brain in the
occipital lobe and in the amygdala. Contactin-1 is
differentially expressed in tumor tissues and may,
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 85
Score = 31.3 bits (71), Expect = 0.37
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP 46
+ S+ +L+I Q +H G+Y+C A + V PP
Sbjct: 43 KDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIVRGPP 85
Score = 29.0 bits (65), Expect = 2.7
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 170 ISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAP 229
I + KD + R G L + N + +G Y CTA ++ A L V G P
Sbjct: 28 IDFDKDGGHY--RRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIVRGPP 85
>gnl|CDD|143166 cd00098, IgC, Immunoglobulin Constant domain. IgC:
Immunoglobulin constant domain (IgC). Members of the
IgC family are components of immunoglobulin, T-cell
receptors, CD1 cell surface glycoproteins, secretory
glycoproteins A/C, and Major Histocompatibility Complex
(MHC) class I/II molecules. In immunoglobulins, each
chain is composed of one variable domain (IgV) and one
or more IgC domains. These names reflect the fact that
the variability in sequences is higher in the variable
domain than in the constant domain. The IgV domain is
responsible for antigen binding, and the IgC domain is
involved in oligomerization and molecular interactions.
Length = 95
Score = 31.7 bits (72), Expect = 0.37
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 47 IFIQRPVSTTYSTGSTSRITCLVEG-HPLP-QMTWFHDGNSLDSDDHVTY 94
+F+ P S G + +TCL G +P +TW +G L S T
Sbjct: 1 VFLLPP-SPEELLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTP 49
Score = 31.7 bits (72), Expect = 0.37
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 231 IFIQRPVSTTYSTGSTSRITCLVEG-HPLP-QMTWFHDGNSLDSDDHVTY 278
+F+ P S G + +TCL G +P +TW +G L S T
Sbjct: 1 VFLLPP-SPEELLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTP 49
>gnl|CDD|143266 cd05858, Ig3_FGFR-2, Third immunoglobulin (Ig)-like domain of
fibroblast growth factor receptor 2 (FGFR2).
Ig3_FGFR-2-like; domain similar to the third
immunoglobulin (Ig)-like domain of human fibroblast
growth factor receptor 2 (FGFR2). Fibroblast growth
factors (FGFs) participate in morphogenesis,
development, angiogenesis, and wound healing. These
FGF-stimulated processes are mediated by four FGFR
tyrosine kinases (FGRF1-4). FGFRs are comprised of an
extracellular portion consisting of three Ig-like
domains, a transmembrane helix, and a cytoplasmic
portion having protein tyrosine kinase activity. The
highly conserved Ig-like domains 2 and 3, and the linker
region between D2 and D3 define a general binding site
for FGFs. FGFR2 is required for male sex determination.
Length = 90
Score = 31.1 bits (70), Expect = 0.51
Identities = 27/93 (29%), Positives = 34/93 (36%), Gaps = 24/93 (25%)
Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS-------------------- 192
GS+VE CK + P I W K VE K G
Sbjct: 1 GSTVEFVCKVYSDAQPHIQWLK----HVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEV 56
Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
L L N+ +D+G Y C A N +G +LTV
Sbjct: 57 LYLRNVTFEDAGEYTCLAGNSIGISHHSAWLTV 89
Score = 31.1 bits (70), Expect = 0.51
Identities = 27/93 (29%), Positives = 34/93 (36%), Gaps = 24/93 (25%)
Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS-------------------- 376
GS+VE CK + P I W K VE K G
Sbjct: 1 GSTVEFVCKVYSDAQPHIQWLK----HVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEV 56
Query: 377 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
L L N+ +D+G Y C A N +G +LTV
Sbjct: 57 LYLRNVTFEDAGEYTCLAGNSIGISHHSAWLTV 89
Score = 31.1 bits (70), Expect = 0.60
Identities = 23/79 (29%), Positives = 29/79 (36%), Gaps = 15/79 (18%)
Query: 60 GSTSRITCLVEGHPLPQMTWFH----DGNSLDSDDHV-----------TYEHDGFVLVLN 104
GST C V P + W +G+ D T + + VL L
Sbjct: 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLR 60
Query: 105 GVRESDAGVYNCVAQNSEG 123
V DAG Y C+A NS G
Sbjct: 61 NVTFEDAGEYTCLAGNSIG 79
Score = 31.1 bits (70), Expect = 0.60
Identities = 23/79 (29%), Positives = 29/79 (36%), Gaps = 15/79 (18%)
Query: 244 GSTSRITCLVEGHPLPQMTWFH----DGNSLDSDDHV-----------TYEHDGFVLVLN 288
GST C V P + W +G+ D T + + VL L
Sbjct: 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLR 60
Query: 289 GVRESDAGVYNCVAQNSEG 307
V DAG Y C+A NS G
Sbjct: 61 NVTFEDAGEYTCLAGNSIG 79
>gnl|CDD|143239 cd05762, Ig8_MLCK, Eighth immunoglobulin (Ig)-like domain of human
myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth
immunoglobulin (Ig)-like domain of human myosin
light-chain kinase (MLCK). MLCK is a key regulator of
different forms of cell motility involving actin and
myosin II. Agonist stimulation of smooth muscle cells
increases cytosolic Ca2+, which binds calmodulin. This
Ca2+-calmodulin complex in turn binds to and activates
MLCK. Activated MLCK leads to the phosphorylation of the
20 kDa myosin regulatory light chain (RLC) of myosin II
and the stimulation of actin-activated myosin MgATPase
activity. MLCK is widely present in vertebrate tissues;
it phosphorylates the 20 kDa RLC of both smooth and
nonmuscle myosin II. Phosphorylation leads to the
activation of the myosin motor domain and altered
structural properties of myosin II. In smooth muscle
MLCK it is involved in initiating contraction. In
nonmuscle cells, MLCK may participate in cell division
and cell motility; it has been suggested MLCK plays a
role in cardiomyocyte differentiation and contraction
through regulation of nonmuscle myosin II.
Length = 98
Score = 31.1 bits (70), Expect = 0.55
Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNI 198
P+++ P DM+ AG SVE+ CK G +W K + E KI T + I
Sbjct: 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTI 60
Query: 199 --GPQD-SGLYRCTASNLLGEDVAEGYLTVTGAP 229
G Q+ G Y N LG A+ LTV P
Sbjct: 61 TEGQQEHCGCYTLEVENKLGSRQAQVNLTVVDKP 94
Score = 30.3 bits (68), Expect = 1.2
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP 46
+S++L I+ Q+EH G Y+ N G + +++TV P
Sbjct: 54 NSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVVDKP 94
Score = 29.5 bits (66), Expect = 2.3
Identities = 30/90 (33%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNI 382
P+++ P DM+ AG SVE+ CK G +W K + E KI T + I
Sbjct: 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTI 60
Query: 383 --GPQD-SGLYRCTASNLLGEDVAEGYLTV 409
G Q+ G Y N LG A+ LTV
Sbjct: 61 TEGQQEHCGCYTLEVENKLGSRQAQVNLTV 90
>gnl|CDD|143218 cd05741, Ig_CEACAM_D1_like, First immunoglobulin (Ig)-like domain
of carcinoembryonic antigen (CEA) related cell adhesion
molecule (CEACAM) and similar proteins.
Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in
carcinoembryonic antigen (CEA) related cell adhesion
molecule (CEACAM) protein subfamily-like. The CEA family
is a group of anchored or secreted glycoproteins,
expressed by epithelial cells, leukocytes, endothelial
cells and placenta. The CEA family is divided into the
CEACAM and pregnancy-specific glycoprotein (PSG)
subfamilies. This group represents the CEACAM subfamily.
CEACAM1 has many important cellular functions, it is a
cell adhesion molecule, and a signaling molecule that
regulates the growth of tumor cells, it is an angiogenic
factor, and is a receptor for bacterial and viral
pathogens, including mouse hepatitis virus (MHV). In
mice, four isoforms of CEACAM1 generated by alternative
splicing have either two [D1, D4] or four [D1-D4]
Ig-like domains on the cell surface. This family
corresponds to the D1 Ig-like domain. Also belonging to
this group is the N-terminal immunoglobulin (Ig)-like
domain of the signaling lymphocyte activation molecule
(SLAM) family, CD84-like family. The SLAM family is a
group of immune-cell specific receptors that can
regulate both adaptive and innate immune responses. SLAM
family proteins are organized as an extracellular domain
with having two or four Ig-like domains, a single
transmembrane segment, and a cytoplasmic region having
tyr-based motifs. The extracellular domain is organized
as a membrane-distal Ig variable (IgV) domain that is
responsible for ligand recognition and a
membrane-proximal truncated Ig constant-2 (IgC2) domain.
Length = 92
Score = 30.7 bits (70), Expect = 0.66
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 185 HKIHRTGSLRLYNIGPQDSGLYR 207
I+ GSL + N+ +DSG Y
Sbjct: 51 ETIYPNGSLLIQNLTKEDSGTYT 73
Score = 30.7 bits (70), Expect = 0.66
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 369 HKIHRTGSLRLYNIGPQDSGLYR 391
I+ GSL + N+ +DSG Y
Sbjct: 51 ETIYPNGSLLIQNLTKEDSGTYT 73
>gnl|CDD|143300 cd05892, Ig_Myotilin_C, C-terminal immunoglobulin (Ig)-like domain
of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin
(Ig)-like domain of myotilin. Mytolin belongs to the
palladin-myotilin-myopalladin family. Proteins belonging
to the latter family contain multiple Ig-like domains
and function as scaffolds, modulating actin
cytoskeleton. Myotilin is most abundant in skeletal and
cardiac muscle, and is involved in maintaining sarcomere
integrity. It binds to alpha-actinin, filamin and actin.
Mutations in myotilin lead to muscle disorders.
Length = 75
Score = 30.3 bits (68), Expect = 0.78
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 64 RITCLVEGHPLPQMTWFHDGNSLD-SDDHVTYEHDG---FVLVLNGVRESDAGVYNCVAQ 119
++ C + P P++ W + + + D ++ D L++ V + DAG Y A
Sbjct: 2 KLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAV 61
Query: 120 NSEGSA 125
N G A
Sbjct: 62 NEAGVA 67
Score = 30.3 bits (68), Expect = 0.78
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 248 RITCLVEGHPLPQMTWFHDGNSLD-SDDHVTYEHDG---FVLVLNGVRESDAGVYNCVAQ 303
++ C + P P++ W + + + D ++ D L++ V + DAG Y A
Sbjct: 2 KLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAV 61
Query: 304 NSEGSA 309
N G A
Sbjct: 62 NEAGVA 67
Score = 30.3 bits (68), Expect = 0.80
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 156 VEIPCKPDGEPLPRISWSKDE--AEFVEDRNHKIH-RTG--SLRLYNIGPQDSGLYRCTA 210
V++ C+ P P+I W ++ ++ DR +G +L + N+ +D+G Y +A
Sbjct: 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSA 60
Query: 211 SNLLG 215
N G
Sbjct: 61 VNEAG 65
Score = 30.3 bits (68), Expect = 0.80
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 340 VEIPCKPDGEPLPRISWSKDE--AEFVEDRNHKIH-RTG--SLRLYNIGPQDSGLYRCTA 394
V++ C+ P P+I W ++ ++ DR +G +L + N+ +D+G Y +A
Sbjct: 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSA 60
Query: 395 SNLLG 399
N G
Sbjct: 61 VNEAG 65
>gnl|CDD|143190 cd05713, Ig_MOG_like, Immunoglobulin (Ig)-like domain of myelin
oligodendrocyte glycoprotein (MOG). Ig_MOG_like:
immunoglobulin (Ig)-like domain of myelin
oligodendrocyte glycoprotein (MOG). MOG, a minor
component of the myelin sheath, is an important
CNS-specific autoantigen, linked to the pathogenesis of
multiple sclerosis (MS) and experimental autoimmune
encephalomyelitis (EAE). It is a transmembrane protein
having an extracellular Ig domain. MOG is expressed in
the CNS on the outermost lamellae of the myelin sheath,
and on the surface of oligodendrocytes, and may
participate in the completion, compaction, and/or
maintenance of myelin. This group also includes
butyrophilin (BTN). BTN is the most abundant protein in
bovine milk-fat globule membrane (MFGM).
Length = 100
Score = 30.6 bits (70), Expect = 0.91
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 177 AEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRC 208
E ++D + +LR++N+ D GLY C
Sbjct: 53 TELLKDAI--AEGSVALRIHNVRASDEGLYTC 82
Score = 30.6 bits (70), Expect = 0.91
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 361 AEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRC 392
E ++D + +LR++N+ D GLY C
Sbjct: 53 TELLKDAI--AEGSVALRIHNVRASDEGLYTC 82
>gnl|CDD|172646 PRK14158, PRK14158, heat shock protein GrpE; Provisional.
Length = 194
Score = 31.4 bits (71), Expect = 1.3
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 13/120 (10%)
Query: 414 SVEPAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVN-----ATINSLFGYHSNEQQ 468
+ E + +A + AD + LA++E +AA N L Y Q+
Sbjct: 20 AKEAEAAQGKPEAAQPVAAADRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQK 79
Query: 469 DHGSLMKLLRFPDESA-RTVVRAADVYERTLSHIKKH----IQAGVKMNLSEDLSLGKAF 523
+ +LL++ +ES ++ A D ER L H + I G++M LS LS K F
Sbjct: 80 EK---EELLKYGNESLILEILPAVDNMERALDHADEESMSAIIEGIRMTLSMLLSTLKKF 136
>gnl|CDD|143307 cd05899, IgV_TCR_beta, Immunoglobulin (Ig) variable (V) domain of
T-cell receptor (TCR) bet a chain. IgV_TCR_beta:
immunoglobulin (Ig) variable domain of the beta chain of
alpha/beta T-cell antigen receptors (TCRs). TCRs mediate
antigen recognition by T lymphocytes, and are composed
of alpha and beta, or gamma and delta, polypeptide
chains with variable (V) and constant (C) regions. This
group includes the variable domain of the alpha chain of
alpha/beta TCRs. Alpha/beta TCRs recognize antigen as
peptide fragments presented by major histocompatibility
complex (MHC) molecules. The variable domain of TCRs is
responsible for antigen recognition, and is located at
the N-terminus of the receptor. Gamma/delta TCRs
recognize intact protein antigens; they recognize
proteins antigens directly and without antigen
processing, and MHC independently of the bound peptide.
Length = 110
Score = 30.3 bits (69), Expect = 1.3
Identities = 26/109 (23%), Positives = 39/109 (35%), Gaps = 29/109 (26%)
Query: 144 KPFDMRAPAGSSVEIPCKPD-------------GEPLPRISWS-----KDEAEFVEDR-- 183
P + G SV + C G+ L + +S +E +DR
Sbjct: 4 SPRYLIKGRGQSVTLRCSQTSGHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFS 63
Query: 184 -NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY------LTV 225
+ SL + + P+DS +Y C +S LG E Y LTV
Sbjct: 64 ASRPSLTRSSLTIKSAEPEDSAVYLCASS--LGGGADEAYFGPGTRLTV 110
Score = 30.3 bits (69), Expect = 1.3
Identities = 26/109 (23%), Positives = 39/109 (35%), Gaps = 29/109 (26%)
Query: 328 KPFDMRAPAGSSVEIPCKPD-------------GEPLPRISWS-----KDEAEFVEDR-- 367
P + G SV + C G+ L + +S +E +DR
Sbjct: 4 SPRYLIKGRGQSVTLRCSQTSGHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFS 63
Query: 368 -NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY------LTV 409
+ SL + + P+DS +Y C +S LG E Y LTV
Sbjct: 64 ASRPSLTRSSLTIKSAEPEDSAVYLCASS--LGGGADEAYFGPGTRLTV 110
>gnl|CDD|143212 cd05735, Ig8_DSCAM, Eight immunoglobulin (Ig) domain of Down
Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM:
the eight immunoglobulin (Ig) domain of Down Syndrome
Cell Adhesion molecule (DSCAM). DSCAM is a cell
adhesion molecule expressed largely in the developing
nervous system. The gene encoding DSCAM is located at
human chromosome 21q22, the locus associated with the
mental retardation phenotype of Down Syndrome. DSCAM is
predicted to be the largest member of the IG
superfamily. It has been demonstrated that DSCAM can
mediate cation-independent homophilic intercellular
adhesion.
Length = 88
Score = 29.2 bits (65), Expect = 2.0
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 9 ELVISGVQ-----REHGGRYSCVAGNPAGVYRGDLHVTVNAPP 46
+ VIS +Q RE G +SC A N G RG + +TV PP
Sbjct: 43 DEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPP 85
Score = 28.8 bits (64), Expect = 3.0
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 8/85 (9%)
Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT--------GSLRLYNIGPQDSG 204
G E+ C GE + W K++ + + + T +L++ +DSG
Sbjct: 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSG 60
Query: 205 LYRCTASNLLGEDVAEGYLTVTGAP 229
+ C A N GED LTV P
Sbjct: 61 FFSCHAINSYGEDRGIIQLTVQEPP 85
>gnl|CDD|223252 COG0174, GlnA, Glutamine synthetase [Amino acid transport and
metabolism].
Length = 443
Score = 31.1 bits (71), Expect = 2.8
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 819 IDQFKRIRDGDRFWYENPSTFKPAQLTQIKQASLARVICD 858
I F+ I + D + ST + ARV+CD
Sbjct: 58 IAGFEGIGESDMVLKPDLSTLVVDPWREGP---TARVLCD 94
>gnl|CDD|143262 cd05854, Ig6_Contactin-2, Sixth Ig domain of contactin-2.
Ig6_Contactin-2: Sixth Ig domain of the neural cell
adhesion molecule contactin-2-like. Contactins are
comprised of six Ig domains followed by four
fibronectin type III (FnIII) domains anchored to the
membrane by glycosylphosphatidylinositol. Contactin-2
(TAG-1, axonin-1) facilitates cell adhesion by
homophilic binding between molecules in apposed
membranes. It may play a part in the neuronal processes
of neurite outgrowth, axon guidance and fasciculation,
and neuronal migration. The first four Ig domains form
the intermolecular binding fragment, which arranges as
a compact U-shaped module by contacts between IG
domains 1 and 4, and domains 2 and 3. The different
contactins show different expression patterns in the
central nervous system. During development and in
adulthood, contactin-2 is transiently expressed in
subsets of central and peripheral neurons. Contactin-2
is also expressed in retinal amacrine cells in the
developing chick retina, corresponding to the period of
formation and maturation of AC proce sses.
Length = 85
Score = 28.9 bits (64), Expect = 3.0
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 9 ELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP 46
+LVI Q H G Y+C A + V PP
Sbjct: 48 DLVIVNAQLSHAGTYTCTAQTVVDSASASATLVVRGPP 85
>gnl|CDD|143217 cd05740, Ig_CEACAM_D4, Fourth immunoglobulin (Ig)-like domain of
carcinoembryonic antigen (CEA) related cell adhesion
molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin
(Ig)-like domain 4 in carcinoembryonic antigen (CEA)
related cell adhesion molecule (CEACAM) protein
subfamily. The CEA family is a group of anchored or
secreted glycoproteins, expressed by epithelial cells,
leukocytes, endothelial cells and placenta. The CEA
family is divided into the CEACAM and pregnancy-specific
glycoprotein (PSG) subfamilies. This group represents
the CEACAM subfamily. CEACAM1 has many important
cellular functions, it is a cell adhesion molecule, and
a signaling molecule that regulates the growth of tumor
cells, it is an angiogenic factor, and is a receptor for
bacterial and viral pathogens, including mouse hepatitis
virus (MHV). In mice, four isoforms of CEACAM1 generated
by alternative splicing have either two [D1, D4] or four
[D1-D4] Ig-like domains on the cell surface. This family
corresponds to the D4 Ig-like domain.
Length = 91
Score = 28.4 bits (63), Expect = 4.8
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 65 ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN 120
+TC EG + W ++G+ L + +D L N V SD G Y C A N
Sbjct: 23 LTCEAEGQ-ATYIWWVNNGSLLVPPR-LQLSNDNRTLTFNNVTRSDTGHYQCEASN 76
Score = 28.4 bits (63), Expect = 4.8
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 249 ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN 304
+TC EG + W ++G+ L + +D L N V SD G Y C A N
Sbjct: 23 LTCEAEGQ-ATYIWWVNNGSLLVPPR-LQLSNDNRTLTFNNVTRSDTGHYQCEASN 76
>gnl|CDD|185160 PRK15248, PRK15248, fimbrial outer membrane usher protein StbC;
Provisional.
Length = 853
Score = 30.2 bits (68), Expect = 7.2
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 124 SAESVAMIRINGHRA-----PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEA 177
S+ ++ + + P V+K +++ + C+P E +P W D A
Sbjct: 71 SSTNIRFNAVKEGQQTEPCLPLSVMKAAQIKSLPATDAATECRPLREWVPHAGWQFDSA 129
Score = 30.2 bits (68), Expect = 7.2
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 308 SAESVAMIRINGHRA-----PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEA 361
S+ ++ + + P V+K +++ + C+P E +P W D A
Sbjct: 71 SSTNIRFNAVKEGQQTEPCLPLSVMKAAQIKSLPATDAATECRPLREWVPHAGWQFDSA 129
>gnl|CDD|165539 PHA03282, PHA03282, envelope glycoprotein E; Provisional.
Length = 540
Score = 29.9 bits (67), Expect = 7.9
Identities = 26/115 (22%), Positives = 37/115 (32%), Gaps = 23/115 (20%)
Query: 321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLY 380
RAP L+ + PA + P P+ PR++ G+L L
Sbjct: 87 RAPVLLAAWYGRPDPAATGGLAP-GPEFAWPPRVAV----------------VNGTLVLR 129
Query: 381 NIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVADD 435
DSG+Y + S A + + V P P P P DD
Sbjct: 130 EARETDSGMYVLSVSRAPNSTAARAVVFLV----VGPRP--VPTPPGGTPPPDDD 178
>gnl|CDD|200469 cd11330, AmyAc_OligoGlu, Alpha amylase catalytic domain found in
oligo-1,6-glucosidase (also called isomaltase;
sucrase-isomaltase; alpha-limit dextrinase) and related
proteins. Oligo-1,6-glucosidase (EC 3.2.1.10)
hydrolyzes the alpha-1,6-glucosidic linkage of
isomalto-oligosaccharides, pannose, and dextran. Unlike
alpha-1,4-glucosidases (EC 3.2.1.20), it fails to
hydrolyze the alpha-1,4-glucosidic bonds of
maltosaccharides. The Alpha-amylase family comprises the
largest family of glycoside hydrolases (GH), with the
majority of enzymes acting on starch, glycogen, and
related oligo- and polysaccharides. These proteins
catalyze the transformation of alpha-1,4 and alpha-1,6
glucosidic linkages with retention of the anomeric
center. The protein is described as having 3 domains: A,
B, C. A is a (beta/alpha) 8-barrel; B is a loop between
the beta 3 strand and alpha 3 helix of A; C is the
C-terminal extension characterized by a Greek key. The
majority of the enzymes have an active site cleft found
between domains A and B where a triad of catalytic
residues (Asp, Glu and Asp) performs catalysis. Other
members of this family have lost the catalytic activity
as in the case of the human 4F2hc, or only have 2
residues that serve as the catalytic nucleophile and the
acid/base, such as Thermus A4 beta-galactosidase with 2
Glu residues (GH42) and human alpha-galactosidase with 2
Asp residues (GH31). The family members are quite
extensive and include: alpha amylase,
maltosyltransferase, cyclodextrin glycotransferase,
maltogenic amylase, neopullulanase, isoamylase,
1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 472
Score = 29.9 bits (68), Expect = 8.1
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 7/41 (17%)
Query: 603 ANTFEDLAREITDRRVRDKLQRLYGHPG-------FSYHDV 636
A +F+ L R + VRD L+ FS HDV
Sbjct: 288 AYSFDLLGRPFSAAVVRDALEAFEAEAPDGWPCWAFSNHDV 328
>gnl|CDD|216207 pfam00940, RNA_pol, DNA-dependent RNA polymerase. This is a family
of single chain RNA polymerases.
Length = 394
Score = 29.5 bits (67), Expect = 8.4
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 8/39 (20%)
Query: 648 LSGCMEHQRTANCSDLCFHTKYRT-----IDGTCNNLQH 681
L+ C+E ++ D +Y + DG+CN LQH
Sbjct: 64 LAACLELRKALRSGD---PEEYISHLPIHQDGSCNGLQH 99
>gnl|CDD|240086 cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN
binding domain, group 4. Each monomer of OYE contains
FMN as a non-covalently bound cofactor, uses NADPH as a
reducing agent with oxygens, quinones, and
alpha,beta-unsaturated aldehydes and ketones, and can
act as electron acceptors in the catalytic reaction.
Other members of OYE family include trimethylamine
dehydrogenase, 2,4-dienoyl-CoA reductase, enoate
reductase, pentaerythriol tetranitrate reductase,
xenobiotic reductase, and morphinone reductase.
Length = 353
Score = 29.5 bits (67), Expect = 9.1
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 460 FGYHSNEQQDH--GSLMKLLRFPDESARTVVRAADVYER 496
F HSN + D GSL +RFP + V D +
Sbjct: 175 FSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHAD 213
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.421
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 48,555,014
Number of extensions: 4849505
Number of successful extensions: 4364
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4126
Number of HSP's successfully gapped: 408
Length of query: 940
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 834
Effective length of database: 6,236,078
Effective search space: 5200889052
Effective search space used: 5200889052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (28.6 bits)