RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11143
(940 letters)
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 368 bits (947), Expect = e-117
Identities = 113/416 (27%), Positives = 182/416 (43%), Gaps = 18/416 (4%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNA---PPIFIQRPVSTTYSTGSTSRIT 66
LVI+ V G Y+C A N G + + PP F ++ + G
Sbjct: 63 LVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFE 122
Query: 67 CLVEGHPLPQMTWFHDGNSLDSDDHV--TYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 124
C + G Q++W+ DG L D ++ ++ H+ L + +S G YNC A N G+
Sbjct: 123 CRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGT 182
Query: 125 AESVAMIRING-HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDR 183
A S A + ++ P +KP + G S C G +I+W+KD E
Sbjct: 183 ASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGG 242
Query: 184 NHKI---HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPV-ST 239
N+K+ T +L + + D+G Y C ASN+ G+D L V PP FI++ S
Sbjct: 243 NYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ-EPPRFIKKLEPSR 301
Query: 240 TYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH--VTYEHDGFVLVLNGVRESDAGV 297
+R C + G P ++ W+ D + +++ VL + + D+G
Sbjct: 302 IVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGD 361
Query: 298 YNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWS 357
Y C A N+ GSA S +++ P KP + G+ V + C+ G P ++SW
Sbjct: 362 YTCEAHNAAGSASSSTSLKVKE--PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWH 419
Query: 358 KDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
KD+ E + +KI S+ + N+ D G Y+C ASN +G D G +T+
Sbjct: 420 KDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLK 475
Score = 364 bits (935), Expect = e-115
Identities = 110/415 (26%), Positives = 167/415 (40%), Gaps = 20/415 (4%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVN---APPIFIQRPVSTTYSTGSTSRIT 66
L I + H G+Y+C A NP G +T++ PP F +PVS + G +
Sbjct: 159 LQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFK 218
Query: 67 CLVEGHPLPQMTWFHDGNSLDSDD--HVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 124
C V G ++TW D + +T + L + V + DAG Y C A N G
Sbjct: 219 CHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGK 278
Query: 125 AESVAMIRINGHRAPRLVVKPFDMR-APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDR 183
A + + PR + K R CK G P ++ W KDE E E
Sbjct: 279 DSCSAQLGV--QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESS 336
Query: 184 NHKI---HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTT 240
++ L +YN+ +DSG Y C A N G + L V PP+F ++P
Sbjct: 337 KFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK-EPPVFRKKPHPVE 395
Query: 241 YSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV--LVLNGVRESDAGVY 298
G+ + C ++G P Q++W D L S + F+ + + V +D G Y
Sbjct: 396 TLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEY 455
Query: 299 NCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSK 358
C A N GS V I + PR V K D+ G V++ +G ++W K
Sbjct: 456 QCKASNDVGSDTCVGSITL--KAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFK 513
Query: 359 DEAEFVEDRNHKI----HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
D+ E V + ++ +L+ P ++G Y C N G L+V
Sbjct: 514 DKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSV 568
Score = 327 bits (840), Expect = e-101
Identities = 109/412 (26%), Positives = 167/412 (40%), Gaps = 23/412 (5%)
Query: 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV--LV 102
PP FI+ + G + C V+G P ++ W+ + L S + V LV
Sbjct: 5 PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLV 64
Query: 103 LNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHR-APRLVVKPFDMRAPAGSSVEIPCK 161
+N V SD G Y C A+NS G+ S A++ I + P K D+ G V C+
Sbjct: 65 INKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECR 124
Query: 162 PDGEPLPRISWSKDEAEFVEDRNHKI---HRTGSLRLYNIGPQDSGLYRCTASNLLGEDV 218
+G ++SW KD +D N + H +L++ G Y C+ASN LG
Sbjct: 125 INGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTAS 184
Query: 219 AEGYLTVTG--APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD-- 274
+ LT++ PP F +PVS + G + C V G ++TW D +
Sbjct: 185 SSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNY 244
Query: 275 HVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMR- 333
+T + L + V + DAG Y C A N G A + + PR + K R
Sbjct: 245 KMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV--QEPPRFIKKLEPSRI 302
Query: 334 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI---HRTGSLRLYNIGPQDSGLY 390
CK G P ++ W KDE E E ++ L +YN+ +DSG Y
Sbjct: 303 VKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDY 362
Query: 391 RCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVK 442
C A N G + L V+ P ++P ++ +H+ +
Sbjct: 363 TCEAHNAAGSASSSTSLK------VKEPPVFRKKPH-PVETLKGADVHLECE 407
Score = 293 bits (751), Expect = 1e-88
Identities = 81/321 (25%), Positives = 142/321 (44%), Gaps = 12/321 (3%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPV-STTYSTGSTSR 64
++ L + V + G+Y+C A N AG + V PP FI++ S +R
Sbjct: 251 NTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTR 310
Query: 65 ITCLVEGHPLPQMTWFHDGNSLDSDDH--VTYEHDGFVLVLNGVRESDAGVYNCVAQNSE 122
C + G P ++ W+ D + +++ VL + + D+G Y C A N+
Sbjct: 311 YECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAA 370
Query: 123 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED 182
GSA S +++ P KP + G+ V + C+ G P ++SW KD+ E
Sbjct: 371 GSASSSTSLKVKE--PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSG 428
Query: 183 RNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVST 239
+ +KI S+ + N+ D G Y+C ASN +G D G +T+ APP F+++
Sbjct: 429 KKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLK-APPRFVKKLSDI 487
Query: 240 TYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD---HVTYEHDGFVLVLNGVRESDAG 296
+ G ++ +EG + WF D + + ++Y + L + ++AG
Sbjct: 488 STVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAG 547
Query: 297 VYNCVAQNSEGSAESVAMIRI 317
Y C +N G+ E A + +
Sbjct: 548 KYTCQIKNEAGTQECFATLSV 568
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 348 bits (894), Expect = e-106
Identities = 110/423 (26%), Positives = 176/423 (41%), Gaps = 28/423 (6%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTS 63
++ S L+I E G+Y CV N G + +TV AP P + T G +
Sbjct: 302 KQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPA 361
Query: 64 RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG 123
TC G+P+ ++W DG ++ + VL + V++ D G+Y C +N
Sbjct: 362 VFTCQYTGNPIKTVSWMKDGKAIGHSES--------VLRIESVKKEDKGMYQCFVRNDRE 413
Query: 124 SAESVAMIRINGH-RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED 182
SAE+ A +++ G P + + G SV + C G P P ISW D + +
Sbjct: 414 SAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANN 473
Query: 183 RNHKIHR--------TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQ 234
+++ + L + ++ D GLY+C A + +G L V G P +I+
Sbjct: 474 DRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLP--YIR 531
Query: 235 RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESD 294
+ G T +TC V G+P+ + W D +L + +G +++ N R SD
Sbjct: 532 QMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSD 591
Query: 295 AGVYNCVAQNSEG-SAESVAMIRINGHRAPRLVVKPF-DMRAPAGSSVEIPCKPDGEPLP 352
Y CVA+N EG SA +++ PR++ F + A G + + C G LP
Sbjct: 592 QATYTCVAKNQEGYSARGSLEVQVMV--LPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLP 649
Query: 353 -RISWSKDEAEFVEDRNHKIHRT----GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYL 407
I W+ D ED R L + + +G + C A NL G L
Sbjct: 650 LNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPL 709
Query: 408 TVT 410
V
Sbjct: 710 NVY 712
Score = 340 bits (873), Expect = e-103
Identities = 104/437 (23%), Positives = 173/437 (39%), Gaps = 32/437 (7%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNA---PPIFIQRPVSTTYSTGST 62
S + L I V++E G Y C N + + PP+ Q T G +
Sbjct: 387 SESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPS 446
Query: 63 SRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-------LVLNGVRESDAGVYN 115
+ C+ G+P P+++W DG + ++D V L + V +D G+Y
Sbjct: 447 VFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYK 506
Query: 116 CVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD 175
C+A++ G AE A + + + + AG ++ + C G P+ I W +D
Sbjct: 507 CIAKSKVGVAEHSAKLNV---YGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERD 563
Query: 176 EAEFVEDRNHKIHRTGSLRLYNIG-PQDSGLYRCTASNLLGEDV-AEGYLTVTGAPPIFI 233
+R K+ G+L + N+ D Y C A N G + V P I
Sbjct: 564 NRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIP 623
Query: 234 QRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEH---DGFVLVLNG 289
G + C V G LP + W DG ++ D +T G VL +
Sbjct: 624 FAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEA 683
Query: 290 VRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGE 349
V S AG + C A+N G + + + + PR +++P D GS ++ CK DG
Sbjct: 684 VEASHAGNFTCHARNLAGHQQFTTPLNV--YVPPRWILEPTDKAFAQGSDAKVECKADGF 741
Query: 350 PLPRISWSKDEAEFVED------RNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA 403
P P+++W K + + ++ G+L + NI + G Y C A N +G ++
Sbjct: 742 PKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLS 801
Query: 404 EGYLTVTGENSVEPAPH 420
+ V+ H
Sbjct: 802 AVIMIS-----VQAHHH 813
Score = 313 bits (803), Expect = 1e-93
Identities = 99/441 (22%), Positives = 168/441 (38%), Gaps = 49/441 (11%)
Query: 10 LVISGVQRE------HGGRYSCVAGNPAG-VYRGDLHVTVNAPPIFIQRPVSTTYSTGST 62
LV + E H Y+C+A N G + D+HV + G++
Sbjct: 96 LVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNS 155
Query: 63 SRITCLVE---GHPLPQMTWFHDGNSL-----DSDDHVTYEHDGFVLVLNGVRESDA-GV 113
+ I CL+ + ++W D + D G L + V D
Sbjct: 156 AVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG-ELHIREVGPEDGYKS 214
Query: 114 YNCVAQNSEGSAES--------VAMIRINGHRAPRLVVKPFDMR-APAGSSVEIPCKPDG 164
Y C ++ V I+ + + FDM+ S++ + C G
Sbjct: 215 YQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQG 274
Query: 165 EPLPRISWSKDEAEFVEDRNHKIH-----RTGSLRLYNIGPQDSGLYRCTASNLLGEDVA 219
P+P W K + ++ +G+L + + +DSG Y C +N +G +
Sbjct: 275 YPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESV 334
Query: 220 EGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE 279
E LTVT AP P + T G + TC G+P+ ++W DG ++ +
Sbjct: 335 ETVLTVT-APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES---- 389
Query: 280 HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGH-RAPRLVVKPFDMRAPAGS 338
VL + V++ D G+Y C +N SAE+ A +++ G P + + G
Sbjct: 390 ----VLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGP 445
Query: 339 SVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR--------TGSLRLYNIGPQDSGLY 390
SV + C G P P ISW D + + +++ + L + ++ D GLY
Sbjct: 446 SVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLY 505
Query: 391 RCTASNLLGEDVAEGYLTVTG 411
+C A + +G L V G
Sbjct: 506 KCIAKSKVGVAEHSAKLNVYG 526
Score = 291 bits (746), Expect = 1e-85
Identities = 88/450 (19%), Positives = 153/450 (34%), Gaps = 46/450 (10%)
Query: 10 LVISGVQREHGGRYSCVAGNPAG--VYRGDLHVTVNAPPIFIQRPVSTTY-STGSTSRIT 66
+ + + + ++ VA G + P+F++ P + S + + I
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60
Query: 67 CLVEGHPLPQMTWFH-DGNSLDSDDHVTYEHDGFVLVLNGVRESD------AGVYNCVAQ 119
C G+P+P++ W DG ++ + LV R D A VY C+A+
Sbjct: 61 CKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLAR 120
Query: 120 NSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKP---DGEPLPRISWSKDE 176
N GS S + + A G+S I C + + +SW DE
Sbjct: 121 NQFGSIISRD-VHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDE 179
Query: 177 AEFV-----EDRNHKIHRTGSLRLYNIGPQDS-GLYRCTASNLLGED----------VAE 220
E D + + +G L + +GP+D Y+C + L + V
Sbjct: 180 EENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVIT 239
Query: 221 GYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH 280
++ + + + TYS ST + C +G+P+P W+ V
Sbjct: 240 EPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLND 299
Query: 281 ----DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPA 336
L++ D+G Y CV NS G ++ + + P
Sbjct: 300 RVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA--PLSAKIDPPTQTVDF 357
Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 396
G C+ G P+ +SW KD LR+ ++ +D G+Y+C N
Sbjct: 358 GRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE-------SVLRIESVKKEDKGMYQCFVRN 410
Query: 397 LLGEDVAEGYLTVTGENSVEPAPHTSREPS 426
A L + G P +
Sbjct: 411 DRESAEASAELKLGG---RFDPPVIRQAFQ 437
Score = 262 bits (672), Expect = 3e-75
Identities = 89/333 (26%), Positives = 140/333 (42%), Gaps = 17/333 (5%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTG 60
T + + L I+ V GG Y C+A + GV + V P +I++ G
Sbjct: 483 TVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLP-YIRQMEKKAIVAG 541
Query: 61 STSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN 120
T +TC V G+P+ + W D +L + +G +++ N R SD Y CVA+N
Sbjct: 542 ETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKN 601
Query: 121 SEG-SAESVAMIRINGHRAPRLVVKPF-DMRAPAGSSVEIPCKPDGEPLP-RISWSKDEA 177
EG SA +++ PR++ F + A G + + C G LP I W+ D
Sbjct: 602 QEGYSARGSLEVQVMV--LPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQ 659
Query: 178 EFVEDRNHKIHRT----GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFI 233
ED R L + + +G + C A NL G L V PP +I
Sbjct: 660 AISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVY-VPPRWI 718
Query: 234 QRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-----LVLN 288
P ++ GS +++ C +G P PQ+TW + + D L ++
Sbjct: 719 LEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVD 778
Query: 289 GVRESDAGVYNCVAQNSEGSAES-VAMIRINGH 320
+++++ G Y C A N GS S V MI + H
Sbjct: 779 NIQKTNEGYYLCEAINGIGSGLSAVIMISVQAH 811
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 332 bits (852), Expect = e-105
Identities = 92/408 (22%), Positives = 158/408 (38%), Gaps = 23/408 (5%)
Query: 27 AGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEG-HPLPQMTWFHDGNS 85
G+ H F+ P G + C E +P + W DG
Sbjct: 3 WGSELESSHHHHHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLI 62
Query: 86 LD--SDDHVTYEHDGFVLVLN----GVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAP 139
L DD +G +L+ N + D G+Y C A + + ++
Sbjct: 63 LALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPL 122
Query: 140 RLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEA---EFVEDRNHKIHRTGSLRLY 196
R + + + A G +V + C+ G+P+P I W K++ D + +G+L++
Sbjct: 123 RFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQIS 182
Query: 197 NIGPQDSGLYRCTASNLLGEDVA-EGYLTVTGAP-----PIFIQRPVSTTYSTGSTSRIT 250
+ P DSG+YRC+A N E + + P F+QRP + G + +
Sbjct: 183 RLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLE 242
Query: 251 CLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE 310
C V G+P P TW + G L+++ V + D+G Y CV +
Sbjct: 243 CCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENIS 302
Query: 311 SVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHK 370
+ A + + P + P ++ A +E C G+P+P ++W K+ + +
Sbjct: 303 ASAELTV--LVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQ 360
Query: 371 IHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPA 418
I +LR+ + D G Y+C A N G + L V +PA
Sbjct: 361 IVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVP-----KPA 403
Score = 272 bits (698), Expect = 4e-83
Identities = 83/322 (25%), Positives = 132/322 (40%), Gaps = 14/322 (4%)
Query: 8 TELVISGVQREHGGRYSCVAGNPAG--VYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRI 65
++ S + G Y C A + V V P F+ + S T G T +
Sbjct: 82 QNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLL 141
Query: 66 TCLVEGHPLPQMTWFHDGNSLD---SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE 122
C V G P+P + W + L+ D V G L ++ ++ D+GVY C A+N
Sbjct: 142 KCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSG-ALQISRLQPGDSGVYRCSARNPA 200
Query: 123 GSAESV-AMIRING----HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEA 177
+ A +RI HR + +P ++ A G + C G P P +W + E
Sbjct: 201 STRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEE 260
Query: 178 EF-VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRP 236
+ + + + +L + N+ DSG Y C + A LTV PP F+ P
Sbjct: 261 VIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVL-VPPWFLNHP 319
Query: 237 VSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAG 296
+ C V G P+P + W +G+ + D+ L + GV +SD G
Sbjct: 320 SNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGS-NLRILGVVKSDEG 378
Query: 297 VYNCVAQNSEGSAESVAMIRIN 318
Y CVA+N G+A+S A + +
Sbjct: 379 FYQCVAENEAGNAQSSAQLIVP 400
Score = 206 bits (527), Expect = 4e-59
Identities = 59/237 (24%), Positives = 94/237 (39%), Gaps = 13/237 (5%)
Query: 1 TDDRR----SSTELVISGVQREHGGRYSCVAGNPAG-VYRGDLHVTVNAPP------IFI 49
D R S L IS +Q G Y C A NPA + V + + P F+
Sbjct: 166 PGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFL 225
Query: 50 QRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRES 109
QRP + G + + C V G+P P TW + G L+++ V +
Sbjct: 226 QRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDD 285
Query: 110 DAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPR 169
D+G Y CV + + A + + P + P ++ A +E C G+P+P
Sbjct: 286 DSGTYTCVVTYKNENISASAELTV--LVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPT 343
Query: 170 ISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 226
++W K+ + +I +LR+ + D G Y+C A N G + L V
Sbjct: 344 VNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVP 400
Score = 45.2 bits (107), Expect = 8e-05
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAP 45
L I GV + G Y CVA N AG + + V P
Sbjct: 367 LRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKP 402
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 323 bits (828), Expect = 6e-99
Identities = 94/439 (21%), Positives = 140/439 (31%), Gaps = 29/439 (6%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGVYR---GDLHVTVNAPPIFIQRPVSTTYSTGST 62
+ L+I + + G Y+ V G V P I S
Sbjct: 69 PNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDA 128
Query: 63 SRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE 122
TC E W+ + SL + + L L V +D Y C QN
Sbjct: 129 VAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPV 187
Query: 123 GSAESVAMIRINGHRAP-RLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVE 181
+ S + + +N P + P + +G ++ + C P + SW +
Sbjct: 188 SARRSDS-VILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVN------ 240
Query: 182 DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED--VAEGYLTVTGAPP-IFIQRPVS 238
T L + NI +SG Y C A N +TV PP FI S
Sbjct: 241 --GTFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNS 298
Query: 239 TTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVY 298
+TC E W+ + SL + +D L L V +D G Y
Sbjct: 299 NPVEDEDAVALTCEPEIQNTTY-LWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPY 357
Query: 299 NCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSK 358
C QN S +I + + P G ++ + C P + SW
Sbjct: 358 ECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLI 417
Query: 359 DEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPA 418
D + T L + NI ++SGLY C A+N T+T
Sbjct: 418 D--------GNIQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTIT---VSAEL 466
Query: 419 PHTSREPSASKPSVADDTI 437
P S + SKP D +
Sbjct: 467 PKPSISSNNSKPVEDKDAV 485
Score = 320 bits (821), Expect = 6e-98
Identities = 92/413 (22%), Positives = 139/413 (33%), Gaps = 27/413 (6%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVN----APPIFIQRPVSTTYSTGS 61
S+ EL I + + G Y+C A N T+ P FI S
Sbjct: 246 STQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDED 305
Query: 62 TSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNS 121
+TC E W+ + SL + +D L L V +D G Y C QN
Sbjct: 306 AVALTCEPEIQNTTY-LWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNE 364
Query: 122 EGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVE 181
S +I + + P G ++ + C P + SW D
Sbjct: 365 LSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLID------ 418
Query: 182 DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG---APPIFIQRPVS 238
+ T L + NI ++SGLY C A+N T+T P I S
Sbjct: 419 --GNIQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNS 476
Query: 239 TTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVY 298
TC E W+ +G SL + + L L V +DA Y
Sbjct: 477 KPVEDKDAVAFTCEPEAQNTTY-LWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAY 535
Query: 299 NCVAQNSEGSAES-VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWS 357
C QNS + S + + + ++ P D +G+++ + C P P+ SW
Sbjct: 536 VCGIQNSVSANRSDPVTLDVL-YGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWR 594
Query: 358 KDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
+ T L + I P ++G Y C SNL ++T
Sbjct: 595 IN--------GIPQQHTQVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSIT 639
Score = 308 bits (791), Expect = 1e-93
Identities = 85/410 (20%), Positives = 148/410 (36%), Gaps = 28/410 (6%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVN---APPIFIQRPVSTTYSTGSTSRIT 66
L + V R Y C NP R D V +N P P++T+Y +G ++
Sbjct: 166 LTLFNVTRNDTASYKCETQNPVSARRSD-SVILNVLYGPDAPTISPLNTSYRSGENLNLS 224
Query: 67 CLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE 126
C +P Q +WF +G S L + + +++G Y C A NS+
Sbjct: 225 CHAASNPPAQYSWFVNGTFQQSTQE---------LFIPNITVNNSGSYTCQAHNSDTGLN 275
Query: 127 SVAMIRINGHRAPR--LVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRN 184
+ I + P + +V + C+P+ + + W +++ V R
Sbjct: 276 RTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRL 335
Query: 185 HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG-YLTVTGAPPIFIQRPVSTTYST 243
+ +L L ++ D G Y C N L D ++ L V P P T Y
Sbjct: 336 QLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRP 395
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 303
G ++C +P Q +W DGN L ++ + E ++G+Y C A
Sbjct: 396 GVNLSLSCHAASNPPAQYSWLIDGNIQQHTQE---------LFISNITEKNSGLYTCQAN 446
Query: 304 NSEGSAESVAMIRINGHRAPR--LVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEA 361
NS + I + +V C+P+ + + W ++
Sbjct: 447 NSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQS 506
Query: 362 EFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG-YLTVT 410
V R + +L L+N+ D+ Y C N + + ++ L V
Sbjct: 507 LPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVL 556
Score = 236 bits (603), Expect = 3e-67
Identities = 64/397 (16%), Positives = 129/397 (32%), Gaps = 35/397 (8%)
Query: 52 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV----------- 100
+ G + L +W+ + + Y
Sbjct: 6 STPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGRE 65
Query: 101 -------LVLNGVRESDAGVYNCVAQNSEGSAESV-AMIRINGHRAPRLVVKPFDMRAPA 152
L++ + ++D G Y S+ E R+ +
Sbjct: 66 IIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVED 125
Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 212
+V C+P+ + + W +++ V R + +L L+N+ D+ Y+C N
Sbjct: 126 KDAVAFTCEPETQDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQN 185
Query: 213 LLGEDV-AEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLD 271
+ L V P P++T+Y +G ++C +P Q +WF +G
Sbjct: 186 PVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQ 245
Query: 272 SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPR--LVVKP 329
S L + + +++G Y C A NS+ + I + P +
Sbjct: 246 STQE---------LFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSN 296
Query: 330 FDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGL 389
+V + C+P+ + + W +++ V R + +L L ++ D G
Sbjct: 297 NSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGP 356
Query: 390 YRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPS 426
Y C N L D ++ + + + PS
Sbjct: 357 YECGIQNELSVDHSDPVILNV----LYGPDDPTISPS 389
Score = 197 bits (503), Expect = 9e-54
Identities = 62/322 (19%), Positives = 95/322 (29%), Gaps = 35/322 (10%)
Query: 140 RLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAE-------------------FV 180
+L ++ G V + + L SW K E
Sbjct: 1 KLTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPA 60
Query: 181 EDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN-LLGEDVAEGYLTVTG-APPIFIQRPVS 238
I+ SL + NI D+G Y L + A G V P I S
Sbjct: 61 YSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNS 120
Query: 239 TTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVY 298
TC E W+ + SL + + L L V +D Y
Sbjct: 121 KPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASY 179
Query: 299 NCVAQNSEGSAESVAMIRINGHRAP-RLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWS 357
C QN + S + + +N P + P + +G ++ + C P + SW
Sbjct: 180 KCETQNPVSARRSDS-VILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWF 238
Query: 358 KDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEP 417
+ T L + NI +SG Y C A N T+T
Sbjct: 239 VN--------GTFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITV---YAE 287
Query: 418 APHTSREPSASKPSVADDTIHM 439
P + S P +D + +
Sbjct: 288 PPKPFITSNNSNPVEDEDAVAL 309
Score = 45.7 bits (108), Expect = 7e-05
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAP 45
+ L I+ + + G Y+C N A + ++
Sbjct: 602 HTQVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSITVS 641
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 300 bits (769), Expect = 2e-93
Identities = 90/386 (23%), Positives = 159/386 (41%), Gaps = 22/386 (5%)
Query: 44 APPIFIQRPVSTTY---STGSTSRITCLVEGHPLPQMTWFHDGNSLD-SDDHVTYEHDGF 99
+ P+F+Q P + S +++C V+G+P P + W +G +D D DG
Sbjct: 4 SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGS 63
Query: 100 VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPF-DMRAPAGSSVEI 158
+L+ N + DAG Y C+A NS G+ S ++ + + G + +
Sbjct: 64 LLINNPNKTQDAGTYQCIATNSFGTIVSRE-AKLQFAYLENFKTRTRSTVSVRRGQGMVL 122
Query: 159 PCK-PDGEPLPRISWSKDEAE-FVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE 216
C P +W +E + ++R TG+L + + D G Y C +N +
Sbjct: 123 LCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTN 182
Query: 217 D----------VAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD 266
+ + P I +Q P + G+T ++ C G+P+P + W
Sbjct: 183 HKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRA 242
Query: 267 GNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLV 326
+ ++ +G +L + ++ DAG Y CVA+NS G + + + P V
Sbjct: 243 DGKPIARKARRHKSNG-ILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTF--YAQPNWV 299
Query: 327 VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQD 386
D+ SV CK +G P P W K+ + +I + G+L + + D
Sbjct: 300 QIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQ-GTLNITIVNLSD 358
Query: 387 SGLYRCTASNLLGEDVAEGYLTVTGE 412
+G+Y+C A N G + L+V E
Sbjct: 359 AGMYQCVAENKHGVIFSSAELSVIAE 384
Score = 259 bits (664), Expect = 2e-78
Identities = 78/326 (23%), Positives = 132/326 (40%), Gaps = 17/326 (5%)
Query: 5 RSSTELVISGVQREHGGRYSCVAGNPAG-VYRGDLHVTVNAPPIFIQRPVSTTY-STGST 62
+ L+ + + + G Y C+A N G + + + F R ST G
Sbjct: 60 VDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQG 119
Query: 63 SRITCLV-EGHPLPQMTWFHDGNSL-DSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN 120
+ C W + + + G L + V +SD G Y CV N
Sbjct: 120 MVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETG-NLYIAKVEKSDVGNYTCVVTN 178
Query: 121 SEGSAES--------VAMIRINGHRAPRLVVK-PFDMRAPAGSSVEIPCKPDGEPLPRIS 171
+ + + + + G P++ V+ P + A G++V++ C G P+P I
Sbjct: 179 TVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTIL 238
Query: 172 WSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPI 231
W + + + + + + G L + N +D+G Y C A N G++VA+G LT A P
Sbjct: 239 WRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFY-AQPN 297
Query: 232 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVR 291
++Q + + C G P P W +G+ L + D + E L + V
Sbjct: 298 WVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQG--TLNITIVN 355
Query: 292 ESDAGVYNCVAQNSEGSAESVAMIRI 317
SDAG+Y CVA+N G S A + +
Sbjct: 356 LSDAGMYQCVAENKHGVIFSSAELSV 381
Score = 214 bits (546), Expect = 7e-62
Identities = 68/306 (22%), Positives = 120/306 (39%), Gaps = 24/306 (7%)
Query: 138 APRLVVKPFDMRAPA---GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI-HRTGSL 193
P V +P + P V++ C+ G P P I W + + + + GSL
Sbjct: 5 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSL 64
Query: 194 RLYNIG-PQDSGLYRCTASNLLGEDVA-EGYLTVTGAPPIFIQRPVSTTYSTGSTSRITC 251
+ N QD+G Y+C A+N G V+ E L + + + G + C
Sbjct: 65 LINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLC 124
Query: 252 LV-EGHPLPQMTWFHDGNSL-DSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA 309
W + + + G L + V +SD G Y CV N+ +
Sbjct: 125 GPPPHSGELSYAWIFNEYPSYQDNRRFVSQETG-NLYIAKVEKSDVGNYTCVVTNTVTNH 183
Query: 310 ES--------VAMIRINGHRAPRLVVK-PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDE 360
+ + + G P++ V+ P + A G++V++ C G P+P I W + +
Sbjct: 184 KVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRAD 243
Query: 361 AEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPH 420
+ + + + G L + N +D+G Y C A N G++VA+G LT P+
Sbjct: 244 GKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA------QPN 297
Query: 421 TSREPS 426
+ +
Sbjct: 298 WVQIIN 303
Score = 152 bits (385), Expect = 3e-40
Identities = 48/224 (21%), Positives = 88/224 (39%), Gaps = 12/224 (5%)
Query: 227 GAPPIFIQRPVSTTY---STGSTSRITCLVEGHPLPQMTWFHDGNSLD-SDDHVTYEHDG 282
G+ P+F+Q P + S +++C V+G+P P + W +G +D D DG
Sbjct: 3 GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG 62
Query: 283 FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPF-DMRAPAGSSVE 341
+L+ N + DAG Y C+A NS G+ S ++ + + G +
Sbjct: 63 SLLINNPNKTQDAGTYQCIATNSFGTIVSRE-AKLQFAYLENFKTRTRSTVSVRRGQGMV 121
Query: 342 IPCK-PDGEPLPRISWSKDEAE-FVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLG 399
+ C P +W +E + ++R TG+L + + D G Y C +N +
Sbjct: 122 LLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVT 181
Query: 400 ED---VAEGYLTVTGENS-VEPAPHTSREPSASKPSVADDTIHM 439
L + + E P + + P+ T+ +
Sbjct: 182 NHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKL 225
Score = 134 bits (338), Expect = 5e-34
Identities = 39/130 (30%), Positives = 56/130 (43%), Gaps = 2/130 (1%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTS 63
+S+ L I Q+E G Y CVA N G +T A P ++Q + +
Sbjct: 254 HKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESV 313
Query: 64 RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG 123
C G P P W +G+ L + D + E L + V SDAG+Y CVA+N G
Sbjct: 314 FWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQG--TLNITIVNLSDAGMYQCVAENKHG 371
Query: 124 SAESVAMIRI 133
S A + +
Sbjct: 372 VIFSSAELSV 381
Score = 40.6 bits (95), Expect = 0.002
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 1 TDDRR--SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNA 44
T DR L I+ V G Y CVA N GV ++V A
Sbjct: 338 TRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVIA 383
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 293 bits (752), Expect = 6e-91
Identities = 86/398 (21%), Positives = 142/398 (35%), Gaps = 32/398 (8%)
Query: 40 VTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLD-SDDHVTYEHD 97
+ V+ P+ +P + + + + C++EG+ + +W DG S + + + D
Sbjct: 1 LPVDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKD 60
Query: 98 GFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVE 157
LV + SD G Y C A+ G A S I K + G +
Sbjct: 61 EGSLVFLRPQASDEGHYQCFAETPAGVASSRV-ISFRKTYLIASPAKTHEKTPIEGRPFQ 119
Query: 158 IPCK-PDGEPLPRISWSKDEAE-------FVEDRNHKIHRTGSLRLYNIGPQDS---GLY 206
+ C P+ P P I+W K + DR G+L + +D Y
Sbjct: 120 LDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKY 179
Query: 207 RCTASNLLGED-VAEGYLTVTG---------APPIFIQRPVSTTYSTGSTSRITCLVEGH 256
CTA N ++ V + G P+ G + I C+ +
Sbjct: 180 VCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSN 239
Query: 257 PLPQMTWFHDGNSLDSDDHVTYEH----DGFVLVLNGVRESDAGVYNCVAQNSEGSAESV 312
P+ +F +G ++ + G L+ D GVY C N G +
Sbjct: 240 PMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKH 299
Query: 313 AMIRINGHRAPRLVVKPFD-MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI 371
+ +++ AP+ KP + G V IPCK G P P + WS + R +
Sbjct: 300 S-LKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGR-ATV 357
Query: 372 HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
L + + D G Y C A+N G+ E + V
Sbjct: 358 TD-SGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394
Score = 253 bits (648), Expect = 4e-76
Identities = 78/342 (22%), Positives = 116/342 (33%), Gaps = 31/342 (9%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAG-VYRGDLHVTVNAPPIFIQRPVSTTYSTGST 62
R+ LV Q G Y C A PAG + + T G
Sbjct: 58 RKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRP 117
Query: 63 SRITCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGV---------RESDAG 112
++ C++ +P P +TW + D + VT +G SD
Sbjct: 118 FQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIY 177
Query: 113 VYNCVAQNSEGSAESVAMI---------RINGHRAPRLVVKPFDMRAPAGSSVEIPCKPD 163
Y C A+N+ E V + P DM A AG I C
Sbjct: 178 KYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYG 237
Query: 164 GEPLPRISWSKDEAEFVEDRNHKIHRT-----GSLRLYNIGPQDSGLYRCTASNLLGEDV 218
P+ ++ K+ + + +I R L P+D G+Y C N +G+
Sbjct: 238 SNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQ 297
Query: 219 AEGY-LTVTGAPPIFIQRPVSTTY-STGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV 276
LTV + P + Q+P G I C V G P P + W H+ L
Sbjct: 298 KHSLKLTVV-SAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRAT 356
Query: 277 TYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 318
+ LV+ GV+ D G Y C A N G ++++N
Sbjct: 357 VTDS---GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQVN 395
Score = 210 bits (535), Expect = 3e-60
Identities = 63/331 (19%), Positives = 105/331 (31%), Gaps = 32/331 (9%)
Query: 136 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKIHRT--GS 192
+ P L +P ++ + + C +G + SW KD + ++ R GS
Sbjct: 4 DKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGS 63
Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCL 252
L D G Y+C A G + + T G ++ C+
Sbjct: 64 LVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCV 123
Query: 253 V-EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGV---------RESDAGVYNCVA 302
+ +P P +TW + D + VT +G SD Y C A
Sbjct: 124 LPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTA 183
Query: 303 QNSEGSAESVAMI---------RINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPR 353
+N+ E V + P DM A AG I C P+
Sbjct: 184 KNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGY 243
Query: 354 ISWSKDEAEFVEDRNHKIHRT-----GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT 408
++ K+ + + +I R L P+D G+Y C N +G+
Sbjct: 244 PNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSL-K 302
Query: 409 VTGENSVEPAPHTSREPSASKPSVADDTIHM 439
+T V AP ++P + +
Sbjct: 303 LT----VVSAPKYEQKPEKVIVVKQGQDVTI 329
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 292 bits (748), Expect = 1e-90
Identities = 96/387 (24%), Positives = 143/387 (36%), Gaps = 28/387 (7%)
Query: 45 PPIFIQRPVSTTYSTGSTS---RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE-HDGFV 100
P+F ++P T + GS +TC +P W +G L Y G +
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFD-MRAPAGSSVEIP 159
++ N V+ DAG Y CVA N+ G+ S + + D ++ G V
Sbjct: 64 VISNPVKAKDAGSYQCVATNARGTVVSRE-ASLRFGFLQEFSAEERDPVKITEGWGVMFT 122
Query: 160 CK-PDGEPLPRISWSKDEAEFV---EDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLG 215
C P P W +E + R TG+L + D G Y C A++ +
Sbjct: 123 CSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHID 182
Query: 216 EDVAEGYLTVTG-----------APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWF 264
+ + AP I + P T TG + C G+P+PQ+ W
Sbjct: 183 FITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWR 242
Query: 265 HDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPR 324
S S + +L + V D G Y C A+N +G I I H P
Sbjct: 243 KLDGSQTS----KWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIII--HAQPD 296
Query: 325 LVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGP 384
+ D A GS + C G+P P + W +D ++ G LR +
Sbjct: 297 WLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSG-GELRFSKLVL 355
Query: 385 QDSGLYRCTASNLLGEDVAEGYLTVTG 411
+DSG+Y+C A N G A LTV
Sbjct: 356 EDSGMYQCVAENKHGTVYASAELTVQA 382
Score = 248 bits (635), Expect = 2e-74
Identities = 73/327 (22%), Positives = 120/327 (36%), Gaps = 21/327 (6%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGVYRG-DLHVTVNAPPIFIQRPVSTTY-STGSTS 63
+ ++ + V+ + G Y CVA N G + + F + G
Sbjct: 60 AGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGV 119
Query: 64 RITCLV-EGHPLPQMTWFHDG--NSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN 120
TC +P W + N + +D L + SD G Y+C A +
Sbjct: 120 MFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATS 179
Query: 121 SEGSAE----------SVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRI 170
S+A + P D A G V + C G P+P+I
Sbjct: 180 HIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQI 239
Query: 171 SWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPP 230
W K + + + L + N+ +D G Y C A N+ G D +G + + A P
Sbjct: 240 KWRKLDGS---QTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH-AQP 295
Query: 231 IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGV 290
++ T GS R +C+ G P P + W DG L S + + L + +
Sbjct: 296 DWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGG--ELRFSKL 353
Query: 291 RESDAGVYNCVAQNSEGSAESVAMIRI 317
D+G+Y CVA+N G+ + A + +
Sbjct: 354 VLEDSGMYQCVAENKHGTVYASAELTV 380
Score = 149 bits (377), Expect = 4e-39
Identities = 48/225 (21%), Positives = 82/225 (36%), Gaps = 15/225 (6%)
Query: 229 PPIFIQRPVSTTYSTGSTS---RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE-HDGFV 284
P+F ++P T + GS +TC +P W +G L Y G +
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63
Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFD-MRAPAGSSVEIP 343
++ N V+ DAG Y CVA N+ G+ S + + D ++ G V
Sbjct: 64 VISNPVKAKDAGSYQCVATNARGTVVSRE-ASLRFGFLQEFSAEERDPVKITEGWGVMFT 122
Query: 344 CK-PDGEPLPRISWSKDEAEFV---EDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLG 399
C P P W +E + R TG+L + D G Y C A++ +
Sbjct: 123 CSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHID 182
Query: 400 ED-----VAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHM 439
L++ E++ + AP + A ++ + +
Sbjct: 183 FITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTL 227
Score = 134 bits (339), Expect = 4e-34
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 2/130 (1%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTS 63
S L I V E G Y C A N G + ++A P ++ T GS
Sbjct: 253 LSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDL 312
Query: 64 RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG 123
R +C+ G P P + W DG L S + + L + + D+G+Y CVA+N G
Sbjct: 313 RWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGG--ELRFSKLVLEDSGMYQCVAENKHG 370
Query: 124 SAESVAMIRI 133
+ + A + +
Sbjct: 371 TVYASAELTV 380
Score = 40.2 bits (94), Expect = 0.002
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 1 TDDRR--SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNA 44
+ +R S EL S + E G Y CVA N G +TV A
Sbjct: 337 SQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 382
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 302 bits (775), Expect = 5e-90
Identities = 93/479 (19%), Positives = 158/479 (32%), Gaps = 73/479 (15%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYST- 59
++ ++ + L I GV R G Y+C A + + V V+ P +
Sbjct: 283 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEA 342
Query: 60 --GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCV 117
G RI G+P P++ W+ +G L+S+ + H VL + V E D G Y +
Sbjct: 343 TVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGH---VLTIMEVSERDTGNYTVI 399
Query: 118 AQNSEGSAESVAMIRINGHRAPRLVVKPFD---MRAPAGSSVEIPCKPDGEPLPR-ISWS 173
N + ++ + + P++ K G++ + C P P I W
Sbjct: 400 LTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWY 459
Query: 174 KDEAEFVEDRNHKIHRTGS------------------------------------LRLYN 197
E + + + L
Sbjct: 460 WQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVI 519
Query: 198 IGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHP 257
S LY+C A N +G VT P I +Q + T + + C +
Sbjct: 520 QAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTE--QESVSLWCTADRST 577
Query: 258 LPQMTWFHDGNSLDSDDHVTY----------------------EHDGFVLVLNGVRESDA 295
+TW+ G +D ++ L D
Sbjct: 578 FENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQ 637
Query: 296 GVYNCVAQNSEGSAESVAM--IRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPR 353
G Y C+AQ+ + + + + AP + + G S+E+ C G P P+
Sbjct: 638 GDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQ 697
Query: 354 ISWSKDEAEFVEDRNHKIHR-TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
I W KD VED + +L + + +D GLY C A ++LG E + + G
Sbjct: 698 IMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG 756
Score = 277 bits (710), Expect = 5e-81
Identities = 83/486 (17%), Positives = 148/486 (30%), Gaps = 68/486 (13%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP-----IFIQRPVST 55
D L I V G Y C ++V P V
Sbjct: 79 CSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYI 138
Query: 56 TYSTGSTSRITCLVEGHPLPQM--TWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGV 113
T + T I CL L + + + + ++++ + S AG+
Sbjct: 139 TENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKK-GFTIPSYMISYAGM 197
Query: 114 YNCVAQNSEGSAESVAMIRIN-GHRAPRLVVKPF-DMRAPAGSSVEIPCKPDGEPLPRIS 171
C A+ ++ S +S+ I + G+R +V+ P + G + + C E I
Sbjct: 198 VFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGID 257
Query: 172 WSKDEAEFVEDRNHKIHR-------------TGSLRLYNIGPQDSGLYRCTASNLLGEDV 218
++ + ++R +L + + D GLY C AS+ L
Sbjct: 258 FNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKK 317
Query: 219 AEGYLTVTGAPPIFIQRPVSTTYST--GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV 276
++ V P + + + G RI G+P P++ W+ +G L+S+ +
Sbjct: 318 NSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTI 377
Query: 277 TYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFD---MR 333
H VL + V E D G Y + N + ++ + + P++ K
Sbjct: 378 KAGH---VLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDS 434
Query: 334 APAGSSVEIPCKPDGEPLPR-ISWSKDEAEFVEDRNHKIHRTGS---------------- 376
G++ + C P P I W E + + +
Sbjct: 435 YQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGG 494
Query: 377 --------------------LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVE 416
L S LY+C A N +G VT +
Sbjct: 495 NKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEIT 554
Query: 417 PAPHTS 422
P
Sbjct: 555 LQPDMQ 560
Score = 270 bits (692), Expect = 2e-78
Identities = 84/501 (16%), Positives = 154/501 (30%), Gaps = 87/501 (17%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNA----PPIFIQRPVSTTYSTGS 61
S I + G C A Y+ +++ V + + S G
Sbjct: 181 SKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGE 240
Query: 62 TSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD------------GFVLVLNGVRES 109
+ C + + + S D L ++GV S
Sbjct: 241 KLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRS 300
Query: 110 DAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVK-PFDMRAPAGSSVEIPCKPDGEPLP 168
D G+Y C A + + ++ +R++ + A G V IP K G P P
Sbjct: 301 DQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPP 360
Query: 169 RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT-G 227
I W K+ + NH I L + + +D+G Y +N + ++ +++
Sbjct: 361 EIKWYKNGIPL--ESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVY 418
Query: 228 APPIFIQRPVST---TYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDH-------- 275
PP ++ + + +Y G+T +TC V P P + W+ +++
Sbjct: 419 VPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTN 478
Query: 276 ---------------------------VTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 308
+ + V L + + +Y C A N G
Sbjct: 479 PYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGR 538
Query: 309 AESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRN 368
E V + R P + ++P DM+ SV + C D ++W K + +
Sbjct: 539 GERVISFHV--TRGPEITLQP-DMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHV 595
Query: 369 HKI-----------------------HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG 405
++ + + L N QD G Y C A + +
Sbjct: 596 GELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCV 655
Query: 406 YLTVTGENSVEPAPHTSREPS 426
+T AP +
Sbjct: 656 VRQLTVL--ERVAPTITGNLE 674
Score = 268 bits (686), Expect = 1e-77
Identities = 70/439 (15%), Positives = 133/439 (30%), Gaps = 35/439 (7%)
Query: 19 HGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMT 78
+ CV A V + + P + T +T +ITC G
Sbjct: 8 AVALWLCVETRAASVGLPSVSLD---LPRLSIQKDILTIKANTTLQITC--RGQRDLDWL 62
Query: 79 WFHDGNSLDSDDHVTYEHDGF---VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 135
W ++ + + VT DG L + V +D G Y C + ++ ++ ++
Sbjct: 63 WPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYR 122
Query: 136 H---RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP--RISWSKDEAEFVEDRNHKIHRT 190
+ + +V IPC L + ++ +
Sbjct: 123 SPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSK 182
Query: 191 GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT---GAPPIFIQRPVSTTYSTGSTS 247
+ + +G+ C A + Y+ V + + S G
Sbjct: 183 KGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKL 242
Query: 248 RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD------------GFVLVLNGVRESDA 295
+ C + + + S D L ++GV SD
Sbjct: 243 VLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQ 302
Query: 296 GVYNCVAQNSEGSAESVAMIRINGHRAPRLVVK-PFDMRAPAGSSVEIPCKPDGEPLPRI 354
G+Y C A + + ++ +R++ + A G V IP K G P P I
Sbjct: 303 GLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEI 362
Query: 355 SWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENS 414
W K+ + NH I L + + +D+G Y +N + ++ +++
Sbjct: 363 KWYKNGIPL--ESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLV---- 416
Query: 415 VEPAPHTSREPSASKPSVA 433
V P + S
Sbjct: 417 VYVPPQIGEKSLISPVDSY 435
Score = 213 bits (544), Expect = 2e-58
Identities = 56/359 (15%), Positives = 120/359 (33%), Gaps = 37/359 (10%)
Query: 109 SDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP 168
++ CV + + PRL ++ + A ++++I C+ G+
Sbjct: 7 LAVALWLCVETRAASVGLPSVSL-----DLPRLSIQKDILTIKANTTLQITCR--GQRDL 59
Query: 169 RISWSKDEAEFVEDRNHKIHRTG----SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT 224
W +++ + G +L + + D+G Y+C V Y+
Sbjct: 60 DWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQ 119
Query: 225 VTGAPPI----FIQRPVSTTYSTGSTSRITCLVEGHPLPQM--TWFHDGNSLDSDDHVTY 278
+P I V T + T I CL L + + + + +++
Sbjct: 120 DYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISW 179
Query: 279 EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN-GHRAPRLVVKPF-DMRAPA 336
+ + S AG+ C A+ ++ S +S+ I + G+R +V+ P +
Sbjct: 180 DSKK-GFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSV 238
Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR-------------TGSLRLYNIG 383
G + + C E I ++ + ++R +L + +
Sbjct: 239 GEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVT 298
Query: 384 PQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVK 442
D GLY C AS+ L ++ V +P + + + + + K
Sbjct: 299 RSDQGLYTCAASSGLMTKKNSTFVRVH----EKPFVAFGSGMESLVEATVGERVRIPAK 353
Score = 186 bits (472), Expect = 4e-49
Identities = 49/254 (19%), Positives = 84/254 (33%), Gaps = 26/254 (10%)
Query: 3 DRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGST 62
+ ++ T + Y C A N G + V P +P + +
Sbjct: 508 EGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQP-DMQPTEQES 566
Query: 63 SRITCLVEGHPLPQMTWFHDGNSLDSDDHVTY----------------------EHDGFV 100
+ C + +TW+ G +D +
Sbjct: 567 VSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILI 626
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAM--IRINGHRAPRLVVKPFDMRAPAGSSVEI 158
+ L D G Y C+AQ+ + + + + AP + + G S+E+
Sbjct: 627 MELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEV 686
Query: 159 PCKPDGEPLPRISWSKDEAEFVEDRNHKIHR-TGSLRLYNIGPQDSGLYRCTASNLLGED 217
C G P P+I W KD VED + +L + + +D GLY C A ++LG
Sbjct: 687 SCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCA 746
Query: 218 VAEGYLTVTGAPPI 231
E + + GA
Sbjct: 747 KVEAFFIIEGAQEK 760
Score = 146 bits (369), Expect = 3e-36
Identities = 31/234 (13%), Positives = 65/234 (27%), Gaps = 14/234 (5%)
Query: 200 PQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLP 259
L+ C + + L P + T +T +ITC G
Sbjct: 6 LLAVALWLCVETRAASVGLPSVSLD----LPRLSIQKDILTIKANTTLQITC--RGQRDL 59
Query: 260 QMTWFHDGNSLDSDDHVTYEHDGF---VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR 316
W ++ + + VT DG L + V +D G Y C + ++ ++ ++
Sbjct: 60 DWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQ 119
Query: 317 INGH---RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP--RISWSKDEAEFVEDRNHKI 371
+ + +V IPC L + ++ +
Sbjct: 120 DYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISW 179
Query: 372 HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREP 425
+ + +G+ C A + Y+ V + +
Sbjct: 180 DSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHG 233
Score = 46.3 bits (109), Expect = 4e-05
Identities = 9/47 (19%), Positives = 17/47 (36%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRP 52
+ L I V++E G Y+C A + G + + +
Sbjct: 718 GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNLE 764
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 290 bits (743), Expect = 2e-89
Identities = 85/397 (21%), Positives = 139/397 (35%), Gaps = 29/397 (7%)
Query: 38 LHVTVNAPPIFIQRPVS-TTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLD--SDDHVTY 94
+ + PP ++ I C +G+P P W + + D V+
Sbjct: 9 IQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSM 68
Query: 95 EHDG----FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFD-MR 149
G E G Y C A+N G+A S IR+ ++P + D +
Sbjct: 69 RRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNR-IRLQVSKSPLWPKENLDPVV 127
Query: 150 APAGSSVEIPCK-PDGEPLPRISWSKDEAE-FVEDRNHKIHRTGSLRLYNIGPQDS-GLY 206
G+ + + C P G P P I W E +D+ G L N+ QD Y
Sbjct: 128 VQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDY 187
Query: 207 RCTASNLLGEDV---AEGYLTVTGA------PPIFIQ---RPVSTTYSTGSTSRITCLVE 254
C A + L V P F+ S G + C+
Sbjct: 188 SCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIAS 247
Query: 255 GHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAM 314
G P P + W+ G L D +E+ L + V E D+G Y C+A N GS
Sbjct: 248 GVPTPDIAWYKKGGDL-PSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTIS 306
Query: 315 IRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT 374
+R+ AP + +P ++ G + C+ +G P P + W + +
Sbjct: 307 VRV--KAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREV 364
Query: 375 --GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
++ + +Y+C SN G +A +++V
Sbjct: 365 AGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSV 401
Score = 249 bits (638), Expect = 1e-74
Identities = 73/326 (22%), Positives = 119/326 (36%), Gaps = 19/326 (5%)
Query: 9 ELVISGVQREHGGRYSCVAGNPAG-VYRGDLHVTVNAPPIFIQRPVSTTY-STGSTSRIT 66
+ G E+ G Y C A N G + + V+ P++ + + G+ +
Sbjct: 78 DFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQ 137
Query: 67 CLV-EGHPLPQMTWFHDGNSL-DSDDHVTYEHDGFVLVLNGVRESDA-GVYNCVAQNSEG 123
C G P P + W D V+ H+G L + V D Y+C A+
Sbjct: 138 CNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNG-DLYFSNVMLQDMQTDYSCNARFHFT 196
Query: 124 SAES--------VAMIRINGHRAPRLVV---KPFDMRAPAGSSVEIPCKPDGEPLPRISW 172
V R R P + G + + C G P P I+W
Sbjct: 197 HTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAW 256
Query: 173 SKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIF 232
K + D+ + +LR+ N+ +DSG Y C ASN +G + V A P +
Sbjct: 257 YKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVK-AAPYW 315
Query: 233 IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLD-SDDHVTYEHDGFVLVLNGVR 291
+ P + + G R+ C G+P P + W +G L + + E G ++ +
Sbjct: 316 LDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQ 375
Query: 292 ESDAGVYNCVAQNSEGSAESVAMIRI 317
S VY C N G + A + +
Sbjct: 376 ISSRAVYQCNTSNEHGYLLANAFVSV 401
Score = 134 bits (338), Expect = 7e-34
Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 1/131 (0%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTS 63
+ L I+ V E G Y C+A N G R + V V A P ++ P + + G
Sbjct: 271 ENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDG 330
Query: 64 RITCLVEGHPLPQMTWFHDGNSLD-SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE 122
R+ C G+P P + W +G L + + E G ++ + S VY C N
Sbjct: 331 RLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEH 390
Query: 123 GSAESVAMIRI 133
G + A + +
Sbjct: 391 GYLLANAFVSV 401
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 276 bits (707), Expect = 4e-84
Identities = 56/412 (13%), Positives = 120/412 (29%), Gaps = 28/412 (6%)
Query: 12 ISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEG 71
+ Y V+ +P + + + + + ++ + LV+
Sbjct: 19 NNDSSVGKSSSYPMVSESPEDL---GCALRPQSSG-TVYEAAAVEVDVSASITLQVLVDA 74
Query: 72 HPLPQMTWFHDGNSLDSDDHVTYEHDGF-VLVLNGVRESDAGVYNCVAQNSEGSAESVAM 130
W +SL+ H ++ G +V+ + E+ AG Y Q+ + +
Sbjct: 75 PGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFT 134
Query: 131 IRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EAEFVEDRNHKIH 188
+ I ++ R + + C + P P + W + E ++ + +
Sbjct: 135 VSI--RNTLLYTLRRPYFRK-MENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVV 191
Query: 189 RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSR 248
+ L+ + D RC A N LG + + G
Sbjct: 192 KKEEKVLHELFGTD---IRCCARNELGRECTRLFTID--LNQTPQTTLPQLFLKVGEPLW 246
Query: 249 ITCL-VEGHPLPQMTWFHDGNSLDSDDH--VTYEHDGFVLVLNG------VRESDAGVYN 299
I C V + +TW + +L+ ++ ++ ++ V +D G Y
Sbjct: 247 IRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYT 306
Query: 300 CVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD 359
C + + A++ I D + P R +W+
Sbjct: 307 CSSSKHPSQS---ALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFS 363
Query: 360 EAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
F + S+ + G Y A N + L +
Sbjct: 364 RKSF-PCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRS 414
Score = 229 bits (584), Expect = 8e-67
Identities = 45/336 (13%), Positives = 94/336 (27%), Gaps = 30/336 (8%)
Query: 3 DRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGST 62
R +VI + G Y + A Y V++ ++ R
Sbjct: 98 QNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQD 157
Query: 63 SRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNG---VRESDAGVYNCVAQ 119
+ + C+ E P P + W + +S + + +V + E C A+
Sbjct: 158 A-LVCISESVPEPIVEWVLCDSQGESC-----KEESPAVVKKEEKVLHELFGTDIRCCAR 211
Query: 120 NSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKP-DGEPLPRISWSKDEAE 178
N G + + G + I CK ++W +
Sbjct: 212 NELGRECTRLFTI---DLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKA 268
Query: 179 FVEDRNHKI---------HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAP 229
E ++ R + ++ D+G Y C++S + +T+
Sbjct: 269 LEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSA---LVTIVEKG 325
Query: 230 PI-FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLN 288
I + + +P + TW S + +G+ +
Sbjct: 326 FINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL--DNGYSISKF 383
Query: 289 GVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPR 324
+ G Y A+N + + + I +
Sbjct: 384 CNHKHQPGEYIFHAENDDAQFTKMFTLNIRS--GTK 417
Score = 216 bits (550), Expect = 4e-62
Identities = 42/354 (11%), Positives = 98/354 (27%), Gaps = 39/354 (11%)
Query: 104 NGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPD 163
N + Y V+++ E + + V + + +S+ + D
Sbjct: 20 NDSSVGKSSSYPMVSESPEDLG-----CALRPQ-SSGTVYEAAAVEVDVSASITLQVLVD 73
Query: 164 GEPLPRISWSKDEAEFVEDRNHKIHR--TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG 221
W + + + S+ + + +G Y +
Sbjct: 74 APGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILF 133
Query: 222 YLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD 281
+++ ++RP + + C+ E P P + W + +S + +
Sbjct: 134 TVSIRNTLLYTLRRPYFRK--MENQDALVCISESVPEPIVEWVLCDSQGESC-----KEE 186
Query: 282 GFVLVLNG---VRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGS 338
+V + E C A+N G + + G
Sbjct: 187 SPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFT---IDLNQTPQTTLPQLFLKVGE 243
Query: 339 SVEIPCKP-DGEPLPRISWSKDEAEFVEDRNHKI---------HRTGSLRLYNIGPQDSG 388
+ I CK ++W + E ++ R + ++ D+G
Sbjct: 244 PLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTG 303
Query: 389 LYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVK 442
Y C++S + +T+ VE + S + +V+
Sbjct: 304 YYTCSSSKHPSQSA---LVTI-----VEKGFINATNSSEDYEIDQYEEFCFSVR 349
Score = 158 bits (401), Expect = 4e-42
Identities = 31/240 (12%), Positives = 60/240 (25%), Gaps = 14/240 (5%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTG 60
++ + + + G C A N G L G
Sbjct: 184 KEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQT-PQTTLPQLFLKVG 242
Query: 61 STSRITCL-VEGHPLPQMTWFHDGNSLDSDDH--VTYEHDGFVLVLNG------VRESDA 111
I C V + +TW + +L+ ++ ++ ++ V +D
Sbjct: 243 EPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDT 302
Query: 112 GVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRIS 171
G Y C + + A++ I D + P R +
Sbjct: 303 GYYTCSSSKHPSQS---ALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCT 359
Query: 172 WSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPI 231
W+ F + S+ + G Y A N + L +
Sbjct: 360 WTFSRKSF-PCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTKH 418
Score = 93.2 bits (231), Expect = 4e-20
Identities = 15/151 (9%), Positives = 35/151 (23%), Gaps = 18/151 (11%)
Query: 290 VRESDAGVYNCVAQNSEGSAESVA---------------MIRINGHRAPRLVVKPFDMRA 334
D V CV N + + SV + + V + +
Sbjct: 2 TGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQ-SSGTVYEAAAVEV 60
Query: 335 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR--TGSLRLYNIGPQDSGLYRC 392
+S+ + D W + + + S+ + + +G Y
Sbjct: 61 DVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLL 120
Query: 393 TASNLLGEDVAEGYLTVTGENSVEPAPHTSR 423
+ +++ R
Sbjct: 121 FIQSEATNYTILFTVSIRNTLLYTLRRPYFR 151
Score = 44.7 bits (105), Expect = 1e-04
Identities = 4/45 (8%), Positives = 11/45 (24%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQ 50
+ + + G Y A N + + + +
Sbjct: 376 NGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTKHHH 420
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 275 bits (705), Expect = 1e-82
Identities = 71/455 (15%), Positives = 136/455 (29%), Gaps = 49/455 (10%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRI 65
E + + + G+Y+C + ++V V P S + + +
Sbjct: 78 KQNEWITEKAEATNTGKYTCTNKHGLSN---SIYVFVRDPAKLFLVDRSLYGKEDNDTLV 134
Query: 66 TCLVEGHPLPQMTW-FHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 124
C + + + G L D + +++ + R +C S
Sbjct: 135 RCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKS 194
Query: 125 AESVAMI---RINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFV 180
S I R P + V G + C +W ++ ++
Sbjct: 195 VLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTK 254
Query: 181 EDRNHKI--------HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIF 232
+ R +L + + DSG++ C A+N G L V I
Sbjct: 255 LQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFIN 314
Query: 233 IQRPVSTTYST--GSTSRITCLVEGHPLPQM-TWFHDGNSLDSDDHVTYEHDG------- 282
I ++TT G + E P P+ W + + + +
Sbjct: 315 IFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYV 374
Query: 283 FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEI 342
L L ++ ++ G Y + NS+ +A + +N KP + + +
Sbjct: 375 SELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVN--------TKPEILTYDRLVNGML 426
Query: 343 PCKPDGEPLPRISWSK-------DEAEFVEDRNHKIHRTG--------SLRLYNIGPQDS 387
C G P P I W A + ++ +G + + + +
Sbjct: 427 QCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHN 486
Query: 388 GLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTS 422
G C A N +G+ A G N + PH
Sbjct: 487 GTVECKAYNDVGKTSAYFNFAFKGNNKEQIHPHHH 521
Score = 250 bits (640), Expect = 2e-73
Identities = 57/423 (13%), Positives = 118/423 (27%), Gaps = 49/423 (11%)
Query: 18 EHGGRYSCV----AGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHP 73
+ CV G + + +PP G R+ C G
Sbjct: 5 RGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPGFV 64
Query: 74 LPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
W + +++ + ++ G Y C ++ ++ I +
Sbjct: 65 ----KWTFEILDETNENKQN------EWITEKAEATNTGKYTCTNKHGLSNS-----IYV 109
Query: 134 NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFV-EDRNHKIHRTGS 192
+L + + + + C + S + + + +D
Sbjct: 110 FVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAG 169
Query: 193 LRLYNIGP-QDSGLYRCTASNLLGEDVAEGYLTVT-----GAPPIFIQRPVSTTYSTGST 246
+ + ++ C+ G+ V + A P+ S G
Sbjct: 170 IMIKSVKRAYHRLCLHCSVDQ-EGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEE 228
Query: 247 SRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGF-------VLVLNGVRESDAGVY 298
+TC ++ TW + + + H G L ++ R +D+GV+
Sbjct: 229 FTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVF 288
Query: 299 NCVAQNSEGSAESVAMIRINGHRAPRLVVKPF---DMRAPAGSSVEIPCKPDGEPLPR-I 354
C A N+ GSA + + + + P + G +V++ + + P P
Sbjct: 289 MCYANNTFGSANVTTTLEV--VDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQ 346
Query: 355 SWSKDEAEFVEDRNH--------KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY 406
W F + I L L + + G Y SN
Sbjct: 347 QWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFN 406
Query: 407 LTV 409
+ V
Sbjct: 407 VYV 409
Score = 190 bits (483), Expect = 4e-52
Identities = 46/320 (14%), Positives = 95/320 (29%), Gaps = 32/320 (10%)
Query: 107 RESDAGVYNCV----AQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKP 162
A + CV + GS++ + P + D+ G + + C
Sbjct: 3 GARGAWDFLCVLLLLLRVQTGSSQ--PSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTD 60
Query: 163 DGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY 222
G + W+ + + + ++ ++G Y CT + L + Y
Sbjct: 61 PGF----VKWTFEILDETNE-----NKQNEWITEKAEATNTGKYTCTNKHGLSNSI---Y 108
Query: 223 LTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTW-FHDGNSLDSDDHVTYEHD 281
+ V +F+ S + + + C + + + G L D +
Sbjct: 109 VFVRDPAKLFLV-DRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPK 167
Query: 282 GFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMI---RINGHRAPRLVVKPFDMRAPAGS 338
+++ + R +C S S I R P + V G
Sbjct: 168 AGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGE 227
Query: 339 SVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKI--------HRTGSLRLYNIGPQDSGL 389
+ C +W ++ ++ + R +L + + DSG+
Sbjct: 228 EFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGV 287
Query: 390 YRCTASNLLGEDVAEGYLTV 409
+ C A+N G L V
Sbjct: 288 FMCYANNTFGSANVTTTLEV 307
Score = 124 bits (312), Expect = 7e-30
Identities = 23/234 (9%), Positives = 60/234 (25%), Gaps = 23/234 (9%)
Query: 199 GPQDSGLYRCT----ASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVE 254
G + + + C G +PP G R+ C
Sbjct: 3 GARGAWDFLCVLLLLLRVQTGSSQPSVSPGEP-SPPSIHPGKSDLIVRVGDEIRLLCTDP 61
Query: 255 GHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAM 314
G W + +++ + ++ G Y C ++ ++
Sbjct: 62 GFV----KWTFEILDETNENKQN------EWITEKAEATNTGKYTCTNKHGLSNS----- 106
Query: 315 IRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFV-EDRNHKIHR 373
I + +L + + + + C + S + + + +D
Sbjct: 107 IYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDP 166
Query: 374 TGSLRLYNIGP-QDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPS 426
+ + ++ C+ G+ V + + + P S +
Sbjct: 167 KAGIMIKSVKRAYHRLCLHCSVDQ-EGKSVLSEKFILKVRPAFKAVPVVSVSKA 219
Score = 110 bits (277), Expect = 2e-25
Identities = 26/155 (16%), Positives = 46/155 (29%), Gaps = 22/155 (14%)
Query: 5 RSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSR 64
R +EL ++ ++ GG Y+ + N +V VN P + TY
Sbjct: 372 RYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEIL------TYDRLVNGM 425
Query: 65 ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF--------------VLVLNGVRESD 110
+ C+ G P P + W+ + D ++
Sbjct: 426 LQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKH 485
Query: 111 AGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKP 145
G C A N G + G+ + + P
Sbjct: 486 NGTVECKAYNDVGKTSAYFNFAFKGN--NKEQIHP 518
Score = 47.4 bits (112), Expect = 2e-05
Identities = 8/52 (15%), Positives = 12/52 (23%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRP 52
+ + I +H G C A N G + P
Sbjct: 467 PPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKEQIHP 518
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 275 bits (704), Expect = 2e-82
Identities = 70/449 (15%), Positives = 130/449 (28%), Gaps = 46/449 (10%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTG 60
R +VI + G Y + A Y V++ ++ R
Sbjct: 96 DLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMEN 155
Query: 61 STSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN 120
+ + C+ E P P + W + +S + E C A+N
Sbjct: 156 QDA-LVCISESVPEPIVEWVLCDSQGESCKE--ESPAVVKKEEKVLHELFGTDIRCCARN 212
Query: 121 SEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEF 179
G + + I+ ++ P+ + ++ G + I CK ++W +
Sbjct: 213 ELGRECT-RLFTIDLNQTPQTTLPQLFLK--VGEPLWIRCKAVHVNHGFGLTWELENKAL 269
Query: 180 VEDR---------NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPP 230
E N + R + ++ D+G Y C++S + +T+
Sbjct: 270 EEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSA---LVTIVEKGF 326
Query: 231 I-FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNG 289
I + + +P + TW S + +G+ +
Sbjct: 327 INATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL--DNGYSISKFC 384
Query: 290 VRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGE 349
+ G Y A+N + + + I R P+++ + S+ + C DG
Sbjct: 385 NHKHQPGEYIFHAENDDAQFTKMFTLNIR--RKPQVLAE--------ASASQASCFSDGY 434
Query: 350 PLPRISWSK--------------DEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTAS 395
PLP +W K +R S L L +C A
Sbjct: 435 PLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAY 494
Query: 396 NLLGEDVAEGYLTVTGENSVEPAPHTSRE 424
N LG L G T
Sbjct: 495 NSLGTSCETILLNSPGPFPFIQDGGTKHH 523
Score = 274 bits (702), Expect = 3e-82
Identities = 54/412 (13%), Positives = 116/412 (28%), Gaps = 24/412 (5%)
Query: 8 TELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITC 67
+ Y V+ +P + + + + + ++ +
Sbjct: 15 INHKNNDSSVGKSSSYPMVSESPEDL---GCALRPQSSGT-VYEAAAVEVDVSASITLQV 70
Query: 68 LVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF-VLVLNGVRESDAGVYNCVAQNSEGSAE 126
LV+ W +SL+ H ++ G +V+ + E+ AG Y Q+ +
Sbjct: 71 LVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYT 130
Query: 127 SVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHK 186
+ + I ++ R + + C + P P + W +++ E +
Sbjct: 131 ILFTVSI--RNTLLYTLRRPYFRK-MENQDALVCISESVPEPIVEWVLCDSQ-GESCKEE 186
Query: 187 IHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGST 246
+ RC A N LG + + P + G
Sbjct: 187 SPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLK--VGEP 244
Query: 247 SRITCLV-EGHPLPQMTWFHDGNSLDSDDHVT--------YEHDGFVLVLNGVRESDAGV 297
I C + +TW + +L+ ++ ++ V +D G
Sbjct: 245 LWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGY 304
Query: 298 YNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWS 357
Y C + + A++ I D + P R +W+
Sbjct: 305 YTCSSSKHPSQS---ALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWT 361
Query: 358 KDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
F ++ + S+ + G Y A N + L +
Sbjct: 362 FSRKSFPCEQKG-LDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNI 412
Score = 147 bits (373), Expect = 1e-37
Identities = 36/242 (14%), Positives = 73/242 (30%), Gaps = 20/242 (8%)
Query: 197 NIGPQDSGLYRCTASNLLGEDV----AEGYLTVTGAP-----------PIFIQRPVSTTY 241
G QD + +C N D + Y V+ +P + +
Sbjct: 1 ETGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEV 60
Query: 242 STGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF-VLVLNGVRESDAGVYNC 300
++ + LV+ W +SL+ H ++ G +V+ + E+ AG Y
Sbjct: 61 DVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLL 120
Query: 301 VAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDE 360
Q+ + + + I ++ R + + C + P P + W +
Sbjct: 121 FIQSEATNYTILFTVSI--RNTLLYTLRRPYFRK-MENQDALVCISESVPEPIVEWVLCD 177
Query: 361 AEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPH 420
++ E + + RC A N LG + + + P
Sbjct: 178 SQ-GESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQ 236
Query: 421 TS 422
Sbjct: 237 LF 238
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 264 bits (677), Expect = 1e-81
Identities = 77/283 (27%), Positives = 124/283 (43%), Gaps = 12/283 (4%)
Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR---TGSLR 194
P +KP + G S C G +I+W+KD E N+K+ T +L
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLT 64
Query: 195 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRP-VSTTYSTGSTSRITCLV 253
+ + D+G Y C ASN+ G+D L V PP FI++ S +R C +
Sbjct: 65 VLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ-EPPRFIKKLEPSRIVKQDEHTRYECKI 123
Query: 254 EGHPLPQMTWFHDGNSLDSDD--HVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES 311
G P ++ W+ D + +++ VL + + D+G Y C A N+ GSA S
Sbjct: 124 GGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASS 183
Query: 312 VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI 371
+++ P KP + G+ V + C+ G P ++SW KD+ E + +KI
Sbjct: 184 STSLKV--KEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKI 241
Query: 372 HRTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
S+ + N+ D G Y+C ASN +G G +T+
Sbjct: 242 MSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
Score = 261 bits (668), Expect = 2e-80
Identities = 77/284 (27%), Positives = 113/284 (39%), Gaps = 11/284 (3%)
Query: 44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH--VTYEHDGFVL 101
APP F +PVS + G + C V G ++TW D + + +T + L
Sbjct: 4 APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATL 63
Query: 102 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMR-APAGSSVEIPC 160
+ V + DAG Y C A N G A + + PR + K R C
Sbjct: 64 TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV--QEPPRFIKKLEPSRIVKQDEHTRYEC 121
Query: 161 KPDGEPLPRISWSKDEAEFVEDRNHKIHR---TGSLRLYNIGPQDSGLYRCTASNLLGED 217
K G P ++ W KDE E E ++ L +YN+ +DSG Y C A N G
Sbjct: 122 KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA 181
Query: 218 VAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVT 277
+ L V PP+F ++P G+ + C ++G P Q++W D L S
Sbjct: 182 SSSTSLKVK-EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYK 240
Query: 278 YEHDG--FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 319
+ + + V +D G Y C A N GS V I +
Sbjct: 241 IMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
Score = 219 bits (559), Expect = 5e-65
Identities = 60/228 (26%), Positives = 101/228 (44%), Gaps = 8/228 (3%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRP-VSTTYSTGSTSR 64
++ L + V + G+Y+C A N AG + V PP FI++ S +R
Sbjct: 59 NTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTR 118
Query: 65 ITCLVEGHPLPQMTWFHDGNSLDSDD--HVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE 122
C + G P ++ W+ D + +++ VL + + D+G Y C A N+
Sbjct: 119 YECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAA 178
Query: 123 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED 182
GSA S +++ P KP + G+ V + C+ G P ++SW KD+ E
Sbjct: 179 GSASSSTSLKV--KEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSG 236
Query: 183 RNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 227
+ +KI S+ + N+ D G Y+C ASN +G G +T+
Sbjct: 237 KKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 262 bits (671), Expect = 2e-79
Identities = 82/395 (20%), Positives = 136/395 (34%), Gaps = 40/395 (10%)
Query: 45 PPIFIQRPVST-TYSTGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEHDGFVLV 102
P+F++ P + +S + + I C G+P+P++ W DG ++ + LV
Sbjct: 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLV 62
Query: 103 LNGVRESD------AGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSV 156
R D A VY C+A+N GS S + + A G+S
Sbjct: 63 FPPFRAEDYRQEVHAQVYACLARNQFGSIISRD-VHVRAVVAQYYEADVNKEHVIRGNSA 121
Query: 157 EIPCKPD---GEPLPRISWSKDEAEFV-----EDRNHKIHRTGSLRLYNIGPQDS-GLYR 207
I C + + +SW DE E D + + +G L + +GP+D Y+
Sbjct: 122 VIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQ 181
Query: 208 CTASNLLGEDV---AEGYLTV------TGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPL 258
C + L + A V + AP T + C +G P
Sbjct: 182 CRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPA 241
Query: 259 PQMTWFHDGNSLDSDDHVTYEH----DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAM 314
P W+ V L++ D+G Y CV NS G +
Sbjct: 242 PSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETV 301
Query: 315 IRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT 374
+ + + P G C+ G P+ +SW KD + +
Sbjct: 302 LTV--TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKD-GKAIGHSE------ 352
Query: 375 GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
LR+ ++ +D G+Y+C N A L +
Sbjct: 353 SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 235 bits (600), Expect = 2e-69
Identities = 72/341 (21%), Positives = 124/341 (36%), Gaps = 39/341 (11%)
Query: 6 SSTELVISGVQRE------HGGRYSCVAGNPAGVYR-GDLHVTVNAPPIFIQRPVSTTYS 58
S +LV + E H Y+C+A N G D+HV +
Sbjct: 57 SDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVI 116
Query: 59 TGSTSRITCLVEGH---PLPQMTWFHDGNSL-----DSDDHVTYEHDGFVLVLNGVRESD 110
G+++ I CL+ + ++W D + D G L + V D
Sbjct: 117 RGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG-ELHIREVGPED 175
Query: 111 A-GVYNCVAQNSEGSAES--------VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK 161
Y C ++ V I+ + + ++ + C
Sbjct: 176 GYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCP 235
Query: 162 PDGEPLPRISWSKDEAEFVEDRNHKIHR-----TGSLRLYNIGPQDSGLYRCTASNLLGE 216
G P P W K + ++ +G+L + + +DSG Y C +N +G
Sbjct: 236 AQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGG 295
Query: 217 DVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV 276
+ E LTVT AP P + T G + TC G+P+ ++W DG ++ +
Sbjct: 296 ESVETVLTVT-APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES- 353
Query: 277 TYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
VL + V++ D G+Y C +N SAE+ A +++
Sbjct: 354 -------VLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 193 bits (491), Expect = 2e-54
Identities = 57/305 (18%), Positives = 101/305 (33%), Gaps = 32/305 (10%)
Query: 137 RAPRLVVKPFD-MRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED--RNHKIHRTGSL 193
+ P + +P + + + EI CK G P+P I W + + V D +I G L
Sbjct: 2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKL 61
Query: 194 RLYNIGPQD------SGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTS 247
+D + +Y C A N G ++ + G+++
Sbjct: 62 VFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSA 121
Query: 248 RITCLVEGH---PLPQMTWFHDGNSL-----DSDDHVTYEHDGFVLVLNGVRESDA-GVY 298
I CL+ + ++W D + D G L + V D Y
Sbjct: 122 VIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG-ELHIREVGPEDGYKSY 180
Query: 299 NCVAQNSEGSAES--------VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEP 350
C ++ V I+ + + ++ + C G P
Sbjct: 181 QCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFP 240
Query: 351 LPRISWSKDEAEFVEDRNHKIHR-----TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG 405
P W K + ++ +G+L + + +DSG Y C +N +G + E
Sbjct: 241 APSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVET 300
Query: 406 YLTVT 410
LTVT
Sbjct: 301 VLTVT 305
Score = 136 bits (343), Expect = 1e-34
Identities = 52/231 (22%), Positives = 85/231 (36%), Gaps = 21/231 (9%)
Query: 229 PPIFIQRPVST-TYSTGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEHDGFVLV 286
P+F++ P + +S + + I C G+P+P++ W DG ++ + LV
Sbjct: 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLV 62
Query: 287 LNGVRESD------AGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSV 340
R D A VY C+A+N GS S + + A G+S
Sbjct: 63 FPPFRAEDYRQEVHAQVYACLARNQFGSIISRD-VHVRAVVAQYYEADVNKEHVIRGNSA 121
Query: 341 EIPCKPD---GEPLPRISWSKDEAEFV-----EDRNHKIHRTGSLRLYNIGPQDS-GLYR 391
I C + + +SW DE E D + + +G L + +GP+D Y+
Sbjct: 122 VIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQ 181
Query: 392 CTASNLLGEDV---AEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHM 439
C + L + A V E AP T + TI +
Sbjct: 182 CRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISL 232
Score = 131 bits (330), Expect = 5e-33
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 8/130 (6%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTS 63
++ S L+I E G+Y CV N G + +TV AP P + T G +
Sbjct: 266 KQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPA 325
Query: 64 RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG 123
TC G+P+ ++W DG ++ + VL + V++ D G+Y C +N
Sbjct: 326 VFTCQYTGNPIKTVSWMKDGKAIGHSES--------VLRIESVKKEDKGMYQCFVRNDRE 377
Query: 124 SAESVAMIRI 133
SAE+ A +++
Sbjct: 378 SAEASAELKL 387
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 248 bits (635), Expect = 2e-75
Identities = 85/304 (27%), Positives = 119/304 (39%), Gaps = 21/304 (6%)
Query: 41 TVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD--- 97
T PP FI+ P +G + C G P P++TW G ++S T E D
Sbjct: 2 TGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESA 61
Query: 98 GFVLVLNGVR-ESDAGVYNCVAQNSEGSAES-----VAMIRINGHRAPRLVVKPFDMRAP 151
G VL + +R D VY CVAQNS G V P + + P
Sbjct: 62 GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVE 121
Query: 152 AGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHK---IHRTGSLRLYNIGPQDSGLYRC 208
+ + C G P P I+W KD ++ R+G+L++ + D G Y C
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYEC 181
Query: 209 TASNLLGEDV---AEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFH 265
A+N G A Y+ V P F P+S G ITC+ G P+P + W
Sbjct: 182 VATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQ 241
Query: 266 DGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRL 325
L +D + VL D+ Y CVA +S G E+VA I + P+
Sbjct: 242 GAEDLTPEDDMPVGR----NVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKS--LPKA 295
Query: 326 VVKP 329
K
Sbjct: 296 GTKH 299
Score = 245 bits (628), Expect = 2e-74
Identities = 78/301 (25%), Positives = 117/301 (38%), Gaps = 18/301 (5%)
Query: 135 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR----T 190
G PR + +P D +G C+ G+P PR++W+K + R I
Sbjct: 3 GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62
Query: 191 GSLRLYNIG-PQDSGLYRCTASNLLGEDVAEGYLTV------TGAPPIFIQRPVSTTYST 243
LR+ + P+D +Y C A N +GE LTV P P
Sbjct: 63 AVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVER 122
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLD--SDDHVTYEHDGFVLVLNGVRESDAGVYNCV 301
T+ + C G+P P++TWF D +D + + + L + E+D G Y CV
Sbjct: 123 TRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECV 182
Query: 302 AQNSEGSAESV-AMIRINGHR-APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD 359
A NS G S A + + APR + P G +V I C G P+P + W +
Sbjct: 183 ATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQG 242
Query: 360 EAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAP 419
+ + + + G L +DS Y C A + LG A +TV
Sbjct: 243 AEDLTPEDDMPV---GRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKAGTKH 299
Query: 420 H 420
H
Sbjct: 300 H 300
Score = 196 bits (500), Expect = 2e-56
Identities = 61/246 (24%), Positives = 92/246 (37%), Gaps = 16/246 (6%)
Query: 3 DRRSSTELVISGVQR-EHGGRYSCVAGNPAGVYRGDLHVTV-------NAPPIFIQRPVS 54
D + L I ++ Y CVA N G +TV + P P
Sbjct: 58 DESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQL 117
Query: 55 TTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLD--SDDHVTYEHDGFVLVLNGVRESDAG 112
T+ + C G+P P++TWF D +D + + + L + E+D G
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQG 177
Query: 113 VYNCVAQNSEGSAESV-AMIRINGHR-APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRI 170
Y CVA NS G S A + + APR + P G +V I C G P+P +
Sbjct: 178 KYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYV 237
Query: 171 SWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPP 230
W + + + + + G L +DS Y C A + LG A +TV P
Sbjct: 238 KWMQGAEDLTPEDDMPV---GRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKS-LP 293
Query: 231 IFIQRP 236
+
Sbjct: 294 KAGTKH 299
Score = 49.4 bits (118), Expect = 2e-06
Identities = 11/52 (21%), Positives = 19/52 (36%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRP 52
+D V+ + Y+CVA + GV +TV + P +
Sbjct: 248 PEDDMPVGRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKAGTKH 299
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 242 bits (620), Expect = 2e-73
Identities = 61/281 (21%), Positives = 104/281 (37%), Gaps = 8/281 (2%)
Query: 44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF--VL 101
A S G + TC G P + G + S V + +G L
Sbjct: 3 ALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRL 62
Query: 102 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK 161
+ DAG+Y C A +++G + A + + ++ G E+ C+
Sbjct: 63 TIYNANIEDAGIYRCQATDAKGQTQE-ATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCR 121
Query: 162 PDGEPLPRISWSKDEAEFVEDRNHKIHRT--GSLRLYNIGPQDSGLYRCTASNL-LGEDV 218
P P +SW E +++ +L++ NI D G+YRC GE
Sbjct: 122 VSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEID 181
Query: 219 AEGYLTVTGAPPIFI--QRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV 276
+ + PP Q+ + T G +C G P P ++WF +G ++ ++
Sbjct: 182 FRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY 241
Query: 277 TYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
+ L + + SD G Y C A N G E A +++
Sbjct: 242 ILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282
Score = 241 bits (616), Expect = 6e-73
Identities = 60/280 (21%), Positives = 110/280 (39%), Gaps = 9/280 (3%)
Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLR 194
++ + + G S C GEP ++ + + + + + G L
Sbjct: 4 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLT 63
Query: 195 LYNIGPQDSGLYRCTASNLLGEDV-AEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLV 253
+YN +D+G+YRC A++ G+ A L + F + + G + + C V
Sbjct: 64 IYNANIEDAGIYRCQATDAKGQTQEATVVLEIY-QKLTFREVVSPQEFKQGEDAEVVCRV 122
Query: 254 EGHPLPQMTWFHDGNSLDSDDHVTYE-HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESV 312
P P ++W + + + + L + + +SD G+Y C +
Sbjct: 123 SSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDF 182
Query: 313 AMIRINGHRAPRLVV--KPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHK 370
I + + P + + K F+ A G + C+ G P P ISW ++ E+ +
Sbjct: 183 RDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYI 242
Query: 371 I-HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
+ L + NI D G Y C A+N GED + +L V
Sbjct: 243 LKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282
Score = 206 bits (526), Expect = 3e-60
Identities = 49/234 (20%), Positives = 85/234 (36%), Gaps = 6/234 (2%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAG-VYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSR 64
+ L I E G Y C A + G + + + F + + G +
Sbjct: 58 VRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAE 117
Query: 65 ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE-HDGFVLVLNGVRESDAGVYNCVAQNSEG 123
+ C V P P ++W + + + + L + + +SD G+Y C +
Sbjct: 118 VVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEAR 177
Query: 124 SAESVAMIRINGHRAPRLVV--KPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVE 181
I + + P + + K F+ A G + C+ G P P ISW ++ E
Sbjct: 178 GEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEE 237
Query: 182 DRNHKI-HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQ 234
+ + + L + NI D G Y C A+N GED + +L V
Sbjct: 238 NEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF-VQHHHHH 290
Score = 161 bits (408), Expect = 3e-44
Identities = 41/204 (20%), Positives = 71/204 (34%), Gaps = 9/204 (4%)
Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF--VL 285
A S G + TC G P + G + S V + +G L
Sbjct: 3 ALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRL 62
Query: 286 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK 345
+ DAG+Y C A +++G + A + + ++ G E+ C+
Sbjct: 63 TIYNANIEDAGIYRCQATDAKGQTQE-ATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCR 121
Query: 346 PDGEPLPRISWSKDEAEFVEDRNHKIHRT--GSLRLYNIGPQDSGLYRCTASNL-LGEDV 402
P P +SW E +++ +L++ NI D G+YRC GE
Sbjct: 122 VSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEID 181
Query: 403 AEGYLTVTGENSVEPAPHTSREPS 426
+ + +V PA ++
Sbjct: 182 FRDIIVIV---NVPPAISMPQKSF 202
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 239 bits (612), Expect = 3e-72
Identities = 65/291 (22%), Positives = 111/291 (38%), Gaps = 17/291 (5%)
Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPL-PRISWSKDEAEFVEDRNHKI------HR 189
R ++ + P G S C+ G+ ISW E + +I
Sbjct: 1 RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 190 TGSLRLYNIGPQDSGLYRCTASNLLGEDV-AEGYLTVTGAPPIFIQRPVSTTYSTGSTSR 248
+ +L +YN D+G+Y+C + G A + + +F P + G +
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF-QKLMFKNAPTPQEFKEGEDAV 119
Query: 249 ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE-HDGFVLVLNGVRESDAGVYNCVAQNSEG 307
I C V P + W H G + V + L + G++++D G Y C +
Sbjct: 120 IVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR 179
Query: 308 SAESVAMIRINGHRAPRLVVKP--FDMRAPAGSSVEIPCKPDGEPLPRISWSKD-----E 360
+ I++ + P + + + A G SV + C DG P P +SW+KD
Sbjct: 180 GEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIEN 239
Query: 361 AEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
E ++++ + L + N+ D Y C A N GE A +L V
Sbjct: 240 EEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 290
Score = 218 bits (556), Expect = 1e-64
Identities = 61/287 (21%), Positives = 106/287 (36%), Gaps = 16/287 (5%)
Query: 46 PIFIQRPVSTTYSTGSTSRITCLVEGHPL-PQMTWFH-DGNSLDSDDH----VTYEHDGF 99
P S G + C V G ++WF +G L + V + D
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 100 VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIP 159
L + DAG+Y CV +G+ A + + + P G I
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSE-ATVNVKIFQKLMFKNAPTPQEFKEGEDAVIV 121
Query: 160 CKPDGEPLPRISWSKDEAEFVEDRNHKIH--RTGSLRLYNIGPQDSGLYRCTASNLLGED 217
C P I W + + ++ + L++ I D G YRC L +
Sbjct: 122 CDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGE 181
Query: 218 VAEGYLTVTG-APPIFI--QRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD 274
+ + V PP Q V+ T + G + + C +G P P M+W DG +++++
Sbjct: 182 INFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEE 241
Query: 275 HVTYEH----DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
+H D L + V ++D Y C+A+N G ++ +++
Sbjct: 242 EDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288
Score = 201 bits (513), Expect = 2e-58
Identities = 54/236 (22%), Positives = 90/236 (38%), Gaps = 9/236 (3%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAGV-YRGDLHVTVNAPPIFIQRPVSTTYST 59
+ S+ L I + G Y CV G ++V + +F P +
Sbjct: 55 VWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKE 114
Query: 60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE-HDGFVLVLNGVRESDAGVYNCVA 118
G + I C V P + W H G + V + L + G++++D G Y C
Sbjct: 115 GEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEG 174
Query: 119 QNSEGSAESVAMIRINGHRAPRLVVKP--FDMRAPAGSSVEIPCKPDGEPLPRISWSKD- 175
+ + I++ + P + + + A G SV + C DG P P +SW+KD
Sbjct: 175 RILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDG 234
Query: 176 ----EAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 227
E ++++ + L + N+ D Y C A N GE A +L V
Sbjct: 235 EPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 290
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 228 bits (582), Expect = 7e-68
Identities = 57/315 (18%), Positives = 111/315 (35%), Gaps = 40/315 (12%)
Query: 40 VTVNAPPIFIQRPVSTTYSTGSTSRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYEHDG 98
+ P F++ +S + + C V + W+ D + D+ ++
Sbjct: 2 IDPFTGPHFVE-YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGI 60
Query: 99 FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEI 158
L++ + DAG+Y + ++ G +S ++ L+++ A + + ++I
Sbjct: 61 CTLLITEFSKKDAGIYEVILKDDRGKDKSRL--KLVDEAFKELMMEVCKKIALSATDLKI 118
Query: 159 PCKPDGEPL----------PRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGL 205
+G L +++WS + + K TG L++ P D G
Sbjct: 119 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGK 178
Query: 206 YRCTASNLLGEDVAEGYLTVTG--------------------APPIFIQRPVSTTYSTGS 245
Y + L+ + P T G
Sbjct: 179 YVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGK 238
Query: 246 TSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG---FVLVLNGVRESDAGVYNCVA 302
+TC V G P P+++W + +L SDDH + + +NGV +D+G Y V
Sbjct: 239 ALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVV 298
Query: 303 QNSEGSAESVAMIRI 317
+N GS S + +
Sbjct: 299 KNKYGSETSDFTVSV 313
Score = 221 bits (564), Expect = 3e-65
Identities = 59/311 (18%), Positives = 104/311 (33%), Gaps = 39/311 (12%)
Query: 136 HRAPRLVVKPFDMRAPAGSSVEIPCKPDG-EPLPRISWSKDEAEFVEDRNHKI-HRTGSL 193
P V+ +V + CK + I W KDE E D H +L
Sbjct: 5 FTGPH-FVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTL 63
Query: 194 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLV 253
+ +D+G+Y + G+D + L A + + + +I
Sbjct: 64 LITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE-AFKELMMEVCKKIALSATDLKIQSTA 122
Query: 254 EGHPL----------PQMTWFHDGNSLDSDDHVTYEHDG--FVLVLNGVRESDAGVYNCV 301
EG L ++ W H+G+++ D V G L +N +D G Y
Sbjct: 123 EGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVME 182
Query: 302 AQNSEGSAESVAMIRING-------------------HRAPRLVVKPFDMRAPAGSSVEI 342
+ + + + +RA L P + G ++ +
Sbjct: 183 LFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNL 242
Query: 343 PCKPDGEPLPRISWSKDEAEFVEDRNHKIH----RTGSLRLYNIGPQDSGLYRCTASNLL 398
C G+P P +SW K+E D + + RT + + DSG Y N
Sbjct: 243 TCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKY 302
Query: 399 GEDVAEGYLTV 409
G + ++ ++V
Sbjct: 303 GSETSDFTVSV 313
Score = 187 bits (476), Expect = 4e-53
Identities = 45/255 (17%), Positives = 86/255 (33%), Gaps = 35/255 (13%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRI 65
L+I+ ++ G Y + + G + L + A + + + +I
Sbjct: 59 GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKI 118
Query: 66 TCLVEGHPL----------PQMTWFHDGNSLDSDDHVTYEHDG--FVLVLNGVRESDAGV 113
EG L ++ W H+G+++ D V G L +N +D G
Sbjct: 119 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGK 178
Query: 114 YNCVAQNSEGSAESVAMIRING-------------------HRAPRLVVKPFDMRAPAGS 154
Y + + + + +RA L P + G
Sbjct: 179 YVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGK 238
Query: 155 SVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH----RTGSLRLYNIGPQDSGLYRCTA 210
++ + C G+P P +SW K+E D + + RT + + DSG Y
Sbjct: 239 ALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVV 298
Query: 211 SNLLGEDVAEGYLTV 225
N G + ++ ++V
Sbjct: 299 KNKYGSETSDFTVSV 313
Score = 151 bits (383), Expect = 1e-40
Identities = 32/219 (14%), Positives = 77/219 (35%), Gaps = 17/219 (7%)
Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVL 287
P F++ +S + + C V + W+ D + D+ ++ L++
Sbjct: 7 GPHFVE-YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLI 65
Query: 288 NGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPD 347
+ DAG+Y + ++ G +S ++ L+++ A + + ++I +
Sbjct: 66 TEFSKKDAGIYEVILKDDRGKDKSRL--KLVDEAFKELMMEVCKKIALSATDLKIQSTAE 123
Query: 348 GEPL----------PRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTA 394
G L +++WS + + K TG L++ P D G Y
Sbjct: 124 GIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMEL 183
Query: 395 SNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVA 433
+ L+ + ++ + ++ + A
Sbjct: 184 FDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRA 222
Score = 47.2 bits (112), Expect = 1e-05
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAP 45
I+GV G+Y V N G D V+V P
Sbjct: 281 FTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 316
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 216 bits (550), Expect = 4e-63
Identities = 67/319 (21%), Positives = 100/319 (31%), Gaps = 48/319 (15%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN 197
+ + +G +VE+ C P G P+ W KD V + L++ N
Sbjct: 9 GPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLV-GPQRLQVLN 67
Query: 198 IGPQDSGLYRCTASNLLGEDVAEGYLTVTG--------------------APPIFIQ--- 234
+DSG Y C P + +
Sbjct: 68 ASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPER 127
Query: 235 -RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEHDGFVLVLNGV 290
+T R C G+P P ++W +G + + H + LV+ V
Sbjct: 128 MDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESV 187
Query: 291 RESDAGVYNCVAQNSEGSAESVAMIRI---NGHRAPRLVVKPFDMRAPAGSSVEIPCKPD 347
SD G Y CV +N GS + + + HR P + A GS VE CK
Sbjct: 188 VPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVY 247
Query: 348 GEPLPRISWSKDEAEF----------------VEDRNHKIHRTGSLRLYNIGPQDSGLYR 391
+ P I W K N L L+N+ +D+G Y
Sbjct: 248 SDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYT 307
Query: 392 CTASNLLGEDVAEGYLTVT 410
C A N +G +L V
Sbjct: 308 CLAGNSIGFSHHSAWLVVL 326
Score = 209 bits (534), Expect = 7e-61
Identities = 67/321 (20%), Positives = 103/321 (32%), Gaps = 49/321 (15%)
Query: 44 APPIFIQRPVSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLV 102
P + + +G ++C G P+ W DG L + V L
Sbjct: 7 VPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVL--VGPQRLQ 64
Query: 103 LNGVRESDAGVYNCVAQNSEGSAESVAMI-------------------RINGHRAPRLV- 142
+ D+G Y+C + ++ ++ AP
Sbjct: 65 VLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTR 124
Query: 143 ---VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED----RNHKIHRTGSLRL 195
+ + PA ++V C G P P ISW K+ EF + H+ SL +
Sbjct: 125 PERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVM 184
Query: 196 YNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGA----PPIFIQRPVSTTYSTGSTSRITC 251
++ P D G Y C N G L V P + P + T GS C
Sbjct: 185 ESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHC 244
Query: 252 LVEGHPLPQMTWFHDG---------------NSLDSDDHVTYEHDGFVLVLNGVRESDAG 296
V P + W L + T + + VL L+ V DAG
Sbjct: 245 KVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAG 304
Query: 297 VYNCVAQNSEGSAESVAMIRI 317
Y C+A NS G + A + +
Sbjct: 305 EYTCLAGNSIGFSHHSAWLVV 325
Score = 184 bits (467), Expect = 8e-52
Identities = 57/278 (20%), Positives = 84/278 (30%), Gaps = 47/278 (16%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYR---------------------GDLHVTV 42
L + E G YSC V +
Sbjct: 57 LVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVD 116
Query: 43 NAPPIFIQ----RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYE 95
P + + +T R C G+P P ++W +G + +
Sbjct: 117 TGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLR 176
Query: 96 HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI---NGHRAPRLVVKPFDMRAPA 152
H + LV+ V SD G Y CV +N GS + + + HR P + A
Sbjct: 177 HQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVL 236
Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEF----------------VEDRNHKIHRTGSLRLY 196
GS VE CK + P I W K N L L+
Sbjct: 237 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLH 296
Query: 197 NIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQ 234
N+ +D+G Y C A N +G +L V A ++
Sbjct: 297 NVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEELVE 334
Score = 144 bits (365), Expect = 4e-38
Identities = 43/218 (19%), Positives = 69/218 (31%), Gaps = 30/218 (13%)
Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLV 286
P + + +G ++C G P+ W DG L + V L
Sbjct: 7 VPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVL--VGPQRLQ 64
Query: 287 LNGVRESDAGVYNCVAQNSEGSAESVAMI-------------------RINGHRAPRLV- 326
+ D+G Y+C + ++ ++ AP
Sbjct: 65 VLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTR 124
Query: 327 ---VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED----RNHKIHRTGSLRL 379
+ + PA ++V C G P P ISW K+ EF + H+ SL +
Sbjct: 125 PERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVM 184
Query: 380 YNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEP 417
++ P D G Y C N G L V + P
Sbjct: 185 ESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRP 222
Score = 78.1 bits (192), Expect = 2e-15
Identities = 20/112 (17%), Positives = 33/112 (29%), Gaps = 2/112 (1%)
Query: 323 PRLVVKPFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN 381
+ + +G +VE+ C P G P+ W KD V + L++ N
Sbjct: 9 GPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLV-GPQRLQVLN 67
Query: 382 IGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVA 433
+DSG Y C +S + + A
Sbjct: 68 ASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGA 119
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 204 bits (520), Expect = 2e-59
Identities = 46/282 (16%), Positives = 94/282 (33%), Gaps = 16/282 (5%)
Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN 197
AP + ++ G +V + C +G + W + + +L N
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCVSNGS----VEWDGPISPYWTLDPES--PGSTLTTRN 57
Query: 198 IGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEG-H 256
+++G YRCT +L V + T G + + CL+
Sbjct: 58 ATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPA 117
Query: 257 PLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAM-- 314
++ +G V + ++ + D+ Y C + + S +
Sbjct: 118 LKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWL 177
Query: 315 -IRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED------R 367
+ P++ ++P + G + +I C + K +E +
Sbjct: 178 KVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQ 237
Query: 368 NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
++ + +L L + QD+G+Y C ASN +G A V
Sbjct: 238 DNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQV 279
Score = 190 bits (483), Expect = 2e-54
Identities = 51/297 (17%), Positives = 83/297 (27%), Gaps = 27/297 (9%)
Query: 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLN 104
P+ G T + C+ G W + + D E G L
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCVSNGSV----EWDGPISPYWTLDP---ESPGSTLTTR 56
Query: 105 GVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK-PD 163
+ G Y C + + + + A + ++ G +PC D
Sbjct: 57 NATFKNTGTYRCTELEDPMAGSTTIHLYVKD-PAHSWNLLAQEVTVVEGQEAVLPCLITD 115
Query: 164 GEPLPRISWSKDEAE-FVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV-AEG 221
+S ++ + + + DS Y C E
Sbjct: 116 PALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGI 175
Query: 222 YLTV---TGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGN-----SLDSD 273
+L V PP P G ++I C + G+ L+SD
Sbjct: 176 WLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSD 235
Query: 274 DHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPF 330
Y L LN V DAG+Y+CVA N G+ + ++ V
Sbjct: 236 FQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQV--------VESHH 284
Score = 184 bits (469), Expect = 2e-52
Identities = 38/245 (15%), Positives = 78/245 (31%), Gaps = 11/245 (4%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP-IFIQRPVSTTYST 59
D + L ++ G Y C +H+ V P + T
Sbjct: 44 LDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVE 103
Query: 60 GSTSRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVA 118
G + + CL+ ++ +G V + ++ + D+ Y C
Sbjct: 104 GQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKT 163
Query: 119 QNSEGSAESVAM---IRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD 175
+ + S + + P++ ++P + G + +I C + K
Sbjct: 164 MVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKR 223
Query: 176 EAEFVED------RNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAP 229
+E +++ + +L L + QD+G+Y C ASN +G A V +
Sbjct: 224 GDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESH 283
Query: 230 PIFIQ 234
Sbjct: 284 HHHHH 288
Score = 68.1 bits (166), Expect = 2e-12
Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 6/90 (6%)
Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN 381
AP + ++ G +V + C +G + W + + +L N
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCVSNGS----VEWDGPISPYWTLDPES--PGSTLTTRN 57
Query: 382 IGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
+++G YRCT +L V
Sbjct: 58 ATFKNTGTYRCTELEDPMAGSTTIHLYVKD 87
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 202 bits (513), Expect = 9e-57
Identities = 68/424 (16%), Positives = 119/424 (28%), Gaps = 40/424 (9%)
Query: 5 RSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQ-RPVSTTYSTGSTS 63
+ V + + C + P G +TV P ++ P+ + G
Sbjct: 45 PGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNL 104
Query: 64 RITCLVEG-HPLPQMT--WFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN 120
+ C VEG P +T L + V + + R+ ++C +
Sbjct: 105 TLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEV-TTTVLVRRDHHGANFSCRTEL 163
Query: 121 SEGSAESVAMIRINGHRAPRLVVKPF-------DMRAPAGSSVEIPCKPDGE---PLPRI 170
+ + V P + + C DG ++
Sbjct: 164 DLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQV 223
Query: 171 SWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT-GAP 229
+ + + + ++ +D G R T + +LG E TVT +
Sbjct: 224 HLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSF 283
Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNG 289
P S G+ + C E HP ++T L+L
Sbjct: 284 PAPNVILTKPEVSEGTEVTVKC--EAHPRAKVTLNGVPAQPLGP--------RAQLLLKA 333
Query: 290 VRESDAGVYNCVAQNSEGSAE--SVAMIRINGHRAPRLVVK--PFDMRAPAGSSVEIPCK 345
E + ++C A + PRL + P + P S C+
Sbjct: 334 TPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQ 393
Query: 346 PDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG 405
G PLP + KD + + G Y C A + GE E
Sbjct: 394 AWGNPLPELKCLKDGTFPLP----------IGESVTVTRDLEGTYLCRARSTQGEVTREV 443
Query: 406 YLTV 409
+ V
Sbjct: 444 TVNV 447
Score = 154 bits (390), Expect = 2e-40
Identities = 53/333 (15%), Positives = 98/333 (29%), Gaps = 40/333 (12%)
Query: 5 RSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAP--------PIFIQRPV-ST 55
+ + + HG +SC +L +AP P + V
Sbjct: 139 PAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPR 198
Query: 56 TYSTGSTSRITCLVEG---HPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLN-GVRESDA 111
+ + C ++G Q+ L+ VTY +D F + V D
Sbjct: 199 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP--TVTYGNDSFSAKASVSVTAEDE 256
Query: 112 GVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRIS 171
G G+ + + + P V G+ V + C + P +++
Sbjct: 257 GTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKC--EAHPRAKVT 314
Query: 172 WSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLG----EDVAEGYLTVTG 227
+ A+ + R L L + + C+A+ + L V
Sbjct: 315 LNGVPAQPLGPRAQ-------LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLY 367
Query: 228 APPIFI-QRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLV 286
P + P + T+ S C G+PLP++ DG
Sbjct: 368 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVT-------- 419
Query: 287 LNGVRESDAGVYNCVAQNSEGSAESVAMIRING 319
V G Y C A++++G + +
Sbjct: 420 ---VTRDLEGTYLCRARSTQGEVTREVTVNVLS 449
Score = 146 bits (370), Expect = 7e-38
Identities = 51/391 (13%), Positives = 104/391 (26%), Gaps = 34/391 (8%)
Query: 52 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDA 111
P G + +TC + L + + V +
Sbjct: 6 PSKVILPRGGSVLVTCSTSCDQPMLLGIET---PLPKKELL--LPGNNRKVYELSNVQED 60
Query: 112 GVYNCVAQNSEGSAESVAMIRINGHRAPRLV-VKPFDMRAPAGSSVEIPCK-PDGEPLPR 169
C + +G + + + + + P V + P P G ++ + C+ G P
Sbjct: 61 SQPMCYSNCPDGQSTAKTFLTV--YWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRAN 118
Query: 170 --ISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 227
+ + E E + + + + C L E + +
Sbjct: 119 LTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSA 178
Query: 228 A--------PPIFIQRPVSTTYSTGSTSRITCLVEG---HPLPQMTWFHDGNSLDSDDHV 276
P Q + + C ++G Q+ L+ V
Sbjct: 179 PYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP--TV 236
Query: 277 TYEHDGFVLVLN-GVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAP 335
TY +D F + V D G G+ + + + P V
Sbjct: 237 TYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVS 296
Query: 336 AGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTAS 395
G+ V + C + P +++ + A+ + R L L + + C+A+
Sbjct: 297 EGTEVTVKC--EAHPRAKVTLNGVPAQPLGPRAQ-------LLLKATPEDNGRSFSCSAT 347
Query: 396 NLLGEDVAEGYLTVTGENSVEPAPHTSREPS 426
+ + T P P
Sbjct: 348 LEVAGQLIHKNQTRELRVLYGPRLDERDCPG 378
Score = 129 bits (324), Expect = 7e-32
Identities = 47/298 (15%), Positives = 90/298 (30%), Gaps = 22/298 (7%)
Query: 143 VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGP-Q 201
V P + P G SV + C + + E + + + ++Y + Q
Sbjct: 4 VSPSKVILPRGGSVLVTCSTSCDQPMLLGI-----ETPLPKKELLLPGNNRKVYELSNVQ 58
Query: 202 DSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEG-HPLPQ 260
+ C ++ G+ A+ +LTV P P+ + G + C VEG P
Sbjct: 59 EDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRAN 118
Query: 261 MT--WFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 318
+T L + V + + R+ ++C + +
Sbjct: 119 LTVVLLRGEKELKREPAVGEPAEV-TTTVLVRRDHHGANFSCRTELDLRPQGLELFENTS 177
Query: 319 GHRAPRLVVKP-------FDMRAPAGSSVEIPCKPDGE---PLPRISWSKDEAEFVEDRN 368
+ V P + + C DG ++ + +
Sbjct: 178 APYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVT 237
Query: 369 HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPS 426
+ + ++ +D G R T + +LG E TVT PAP+
Sbjct: 238 YGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIY--SFPAPNVILTKP 293
Score = 127 bits (320), Expect = 2e-31
Identities = 42/228 (18%), Positives = 65/228 (28%), Gaps = 24/228 (10%)
Query: 2 DDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGS 61
+D S+ V + E R +C VT+ + P S G+
Sbjct: 240 NDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGT 299
Query: 62 TSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNS 121
+ C E HP ++T L+L E + ++C A
Sbjct: 300 EVTVKC--EAHPRAKVTLNGVPAQPLG--------PRAQLLLKATPEDNGRSFSCSATLE 349
Query: 122 EGSAE--SVAMIRINGHRAPRLVVK--PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEA 177
+ PRL + P + P S C+ G PLP + KD
Sbjct: 350 VAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGT 409
Query: 178 EFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
+ + G Y C A + GE E + V
Sbjct: 410 FPLP----------IGESVTVTRDLEGTYLCRARSTQGEVTREVTVNV 447
Score = 80.3 bits (197), Expect = 7e-16
Identities = 24/210 (11%), Positives = 55/210 (26%), Gaps = 13/210 (6%)
Query: 236 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDA 295
P G + +TC + L + + V +
Sbjct: 6 PSKVILPRGGSVLVTCSTSCDQPMLLGIET---PLPKKELL--LPGNNRKVYELSNVQED 60
Query: 296 GVYNCVAQNSEGSAESVAMIRINGHRAPRLV-VKPFDMRAPAGSSVEIPCK-PDGEPLPR 353
C + +G + + + + + P V + P P G ++ + C+ G P
Sbjct: 61 SQPMCYSNCPDGQSTAKTFLTV--YWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRAN 118
Query: 354 --ISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
+ + E E + + + + C L E + +
Sbjct: 119 LTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSA 178
Query: 412 --ENSVEPAPHTSREPSASKPSVADDTIHM 439
+ P T + + + D +
Sbjct: 179 PYQLQTFVLPATPPQLVSPRVLEVDTQGTV 208
Score = 41.8 bits (97), Expect = 8e-04
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 15 VQREHGGRYSCVAGNPAGVYRGDLHVTVNAP 45
V R+ G Y C A + G ++ V V +P
Sbjct: 420 VTRDLEGTYLCRARSTQGEVTREVTVNVLSP 450
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 197 bits (501), Expect = 1e-56
Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 39/306 (12%)
Query: 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG--FVLV 102
P + V+ + C P + +W D S + + E G +
Sbjct: 3 DPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMT 61
Query: 103 LNGVRESDAGVYNCVAQNSEGSAESVAM----------IRINGHRAPRLVVKPFDMRAPA 152
+ D G+Y+C +++G A S + + V +
Sbjct: 62 FKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILE 121
Query: 153 GSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTG-----SLRLYNIGPQDSGLY 206
V + ++++ +E E E +K+H + + + +D G Y
Sbjct: 122 KGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTY 181
Query: 207 RCTASNLLGEDVAEGYLTVT------------------GAPPIFIQRPVSTTYSTGSTSR 248
+ + + L P F++ +S +
Sbjct: 182 TFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE-YLSWEVTGECNVL 240
Query: 249 ITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG 307
+ C V + W+ D + D+ ++ L++ + DAG+Y + ++ G
Sbjct: 241 LKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRG 300
Query: 308 SAESVA 313
+S
Sbjct: 301 KDKSRL 306
Score = 190 bits (484), Expect = 2e-54
Identities = 46/311 (14%), Positives = 95/311 (30%), Gaps = 38/311 (12%)
Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLR 194
P ++ S+ C P SWSKD + ++ G +
Sbjct: 3 DPFTKEVVVNVDDDGVISLNFECD-KMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMT 61
Query: 195 LYNIGPQDSGLYRCTASNLLG--------EDVAEGYLTVTG---APPIFIQRPVSTTYST 243
++G D G+Y C ++ G E+ + L ++ P + ++ ++
Sbjct: 62 FKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILE 121
Query: 244 GSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEHDG----FVLVLNGVRESDAGVY 298
R E ++ + + + D + + +++ D G Y
Sbjct: 122 KGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTY 181
Query: 299 NCVAQNSEGSAESVAMIRINGH----------------RAPRLVVKPFDMRAPAGSSVEI 342
Q+ + + S ++ + + V+ +V +
Sbjct: 182 TFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLL 241
Query: 343 PCKPDGEPLP-RISWSKDEAEFVEDRNHKI-HRTGSLRLYNIGPQDSGLYRCTASNLLGE 400
CK I W KDE E D H +L + +D+G+Y + G+
Sbjct: 242 KCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGK 301
Query: 401 DVAEGYLTVTG 411
D + L
Sbjct: 302 DKSRLKLVDEA 312
Score = 162 bits (410), Expect = 2e-44
Identities = 35/257 (13%), Positives = 75/257 (29%), Gaps = 35/257 (13%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGV------------YRGDLHVTVNAPPIFIQRPV 53
+ T++ + + G YSC + G+ L P + ++ +
Sbjct: 56 NKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSEL 115
Query: 54 STTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEHDG----FVLVLNGVRE 108
+ R E ++ + + + D + + +++
Sbjct: 116 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQD 175
Query: 109 SDAGVYNCVAQNSEGSAESVAMIRINGH----------------RAPRLVVKPFDMRAPA 152
D G Y Q+ + + S ++ + + V+
Sbjct: 176 EDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTG 235
Query: 153 GSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKI-HRTGSLRLYNIGPQDSGLYRCTA 210
+V + CK I W KDE E D H +L + +D+G+Y
Sbjct: 236 ECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVIL 295
Query: 211 SNLLGEDVAEGYLTVTG 227
+ G+D + L
Sbjct: 296 KDDRGKDKSRLKLVDEA 312
Score = 137 bits (346), Expect = 7e-36
Identities = 30/221 (13%), Positives = 65/221 (29%), Gaps = 19/221 (8%)
Query: 227 GAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG--FV 284
G P + V+ + C P + +W D S + + E G
Sbjct: 1 GIDPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTK 59
Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAESVAM----------IRINGHRAPRLVVKPFDMRA 334
+ + D G+Y+C +++G A S + + V +
Sbjct: 60 MTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEI 119
Query: 335 PAGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTG-----SLRLYNIGPQDSG 388
V + ++++ +E E E +K+H + + + +D G
Sbjct: 120 LEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEG 179
Query: 389 LYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASK 429
Y + + + L ++ R+ K
Sbjct: 180 TYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRK 220
Score = 103 bits (259), Expect = 2e-24
Identities = 19/147 (12%), Positives = 44/147 (29%), Gaps = 19/147 (12%)
Query: 2 DDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIF------------- 48
D E+ + +Q E G Y+ + + + +
Sbjct: 160 DRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIR 219
Query: 49 -----IQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFVLV 102
+S + + C V + W+ D + D+ ++ L+
Sbjct: 220 KQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLL 279
Query: 103 LNGVRESDAGVYNCVAQNSEGSAESVA 129
+ + DAG+Y + ++ G +S
Sbjct: 280 ITEFSKKDAGIYEVILKDDRGKDKSRL 306
Score = 68.1 bits (166), Expect = 2e-12
Identities = 18/119 (15%), Positives = 37/119 (31%), Gaps = 4/119 (3%)
Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLR 378
P ++ S+ C P SWSKD + ++ G +
Sbjct: 3 DPFTKEVVVNVDDDGVISLNFECD-KMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMT 61
Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTI 437
++G D G+Y C ++ G + + + + K +A + +
Sbjct: 62 FKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEIL 120
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 195 bits (496), Expect = 3e-56
Identities = 44/283 (15%), Positives = 92/283 (32%), Gaps = 18/283 (6%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNI 198
P + ++ G++V + C +G + W + + + L N
Sbjct: 5 PVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPPSP--HWTLYSDGSSSILSTNNA 58
Query: 199 GPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPL 258
Q++G YRCT A +L V + + + CL+ L
Sbjct: 59 TFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVL 118
Query: 259 -PQMTWFH-DGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAM-- 314
++ G L + ++ ++ + + Y C A S+++
Sbjct: 119 EAGVSLVRVRGRPLMRHTNYSFSPWH-GFTIHRAKFIQSQDYQCSALMGGRKVMSISIRL 177
Query: 315 -IRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKIH 372
++ P L + P ++ G + +I C + + + + + H
Sbjct: 178 KVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFH 237
Query: 373 RT-----GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
+L L + Q +G Y C ASN+ G+ + V
Sbjct: 238 NNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVV 280
Score = 179 bits (455), Expect = 1e-50
Identities = 47/287 (16%), Positives = 86/287 (29%), Gaps = 23/287 (8%)
Query: 44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF--VL 101
+ P+ G+T + C+ G + W H T DG +L
Sbjct: 3 SIPVIEPSVPELVVKPGATVTLRCVGNG----SVEW-----DGPPSPHWTLYSDGSSSIL 53
Query: 102 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK 161
N + G Y C + + + P V ++ +PC
Sbjct: 54 STNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARP-WNVLAQEVVVFEDQDALLPCL 112
Query: 162 -PDGEPLPRISWSKDEAEFVED-RNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA 219
D +S + + N+ ++ S Y+C+A + ++
Sbjct: 113 LTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMS 172
Query: 220 EGY----LTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDD 274
V PP P G ++I C + + H+ L
Sbjct: 173 ISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQ 232
Query: 275 HVTYEHDGF----VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
+ ++ + L L+ V AG Y+CVA N +G + R+
Sbjct: 233 QSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRV 279
Score = 168 bits (426), Expect = 9e-47
Identities = 37/241 (15%), Positives = 77/241 (31%), Gaps = 14/241 (5%)
Query: 3 DRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP-IFIQRPVSTTYSTGS 61
D SS L + ++ G Y C +H+ V P +
Sbjct: 47 DGSSSI-LSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQ 105
Query: 62 TSRITCLVEGHPL-PQMTWFH-DGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 119
+ + CL+ L ++ G L + ++ ++ + + Y C A
Sbjct: 106 DALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWH-GFTIHRAKFIQSQDYQCSAL 164
Query: 120 NSEGSAESVAM---IRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKD 175
S+++ ++ P L + P ++ G + +I C + + +
Sbjct: 165 MGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHN 224
Query: 176 EAEFVEDRNHKIHRT-----GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPP 230
+ + H +L L + Q +G Y C ASN+ G+ + V +
Sbjct: 225 NTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAG 284
Query: 231 I 231
Sbjct: 285 N 285
Score = 118 bits (296), Expect = 2e-29
Identities = 31/204 (15%), Positives = 59/204 (28%), Gaps = 15/204 (7%)
Query: 227 GAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF--V 284
G+ P+ G+T + C+ G + W H T DG +
Sbjct: 2 GSIPVIEPSVPELVVKPGATVTLRCVGNG----SVEW-----DGPPSPHWTLYSDGSSSI 52
Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC 344
L N + G Y C + + + P V ++ +PC
Sbjct: 53 LSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARP-WNVLAQEVVVFEDQDALLPC 111
Query: 345 K-PDGEPLPRISWSKDEAEFVED-RNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV 402
D +S + + N+ ++ S Y+C+A G V
Sbjct: 112 LLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALM-GGRKV 170
Query: 403 AEGYLTVTGENSVEPAPHTSREPS 426
+ + + + P + P+
Sbjct: 171 MSISIRLKVQKVIPGPPALTLVPA 194
Score = 45.3 bits (107), Expect = 5e-05
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRP 52
L + V +H G YSCVA N G + + V
Sbjct: 247 LNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAGNSHHH 289
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 183 bits (466), Expect = 2e-53
Identities = 51/193 (26%), Positives = 85/193 (44%), Gaps = 8/193 (4%)
Query: 225 VTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD----HVTYEH 280
+T P F Q S GST+ + G P+P+++WF DG + + +++
Sbjct: 1 MTTQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSD 60
Query: 281 DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHR-APRLVVKPFDMRAPAGSS 339
L + V ++++G Y+ A N G A S A + + P V + M GS
Sbjct: 61 GRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQ 120
Query: 340 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASN 396
V + + G P P + + +D AE + +I + G SL + P+DSG Y A+N
Sbjct: 121 VRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATN 180
Query: 397 LLGEDVAEGYLTV 409
+G + L V
Sbjct: 181 SVGRATSTAELLV 193
Score = 181 bits (461), Expect = 1e-52
Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 8/189 (4%)
Query: 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD----HVTYEHDGFV 100
P F Q S GST+ + G P+P+++WF DG + + +++
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHR-APRLVVKPFDMRAPAGSSVEIP 159
L + V ++++G Y+ A N G A S A + + P V + M GS V +
Sbjct: 65 LTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQ 124
Query: 160 CKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGE 216
+ G P P + + +D AE + +I + G SL + P+DSG Y A+N +G
Sbjct: 125 VRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGR 184
Query: 217 DVAEGYLTV 225
+ L V
Sbjct: 185 ATSTAELLV 193
Score = 177 bits (452), Expect = 2e-51
Identities = 49/190 (25%), Positives = 77/190 (40%), Gaps = 9/190 (4%)
Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT-----G 191
+AP + GS+ G P+P +SW +D + +
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 192 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG--APPIFIQRPVSTTYSTGSTSRI 249
L + + +SG Y A+N G+ + L V APP F+QR S T GS R+
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRL 123
Query: 250 TCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG--FVLVLNGVRESDAGVYNCVAQNSEG 307
V G P P + ++ DG + S +G + L++ D+G Y+ A NS G
Sbjct: 124 QVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVG 183
Query: 308 SAESVAMIRI 317
A S A + +
Sbjct: 184 RATSTAELLV 193
Score = 127 bits (322), Expect = 6e-34
Identities = 41/129 (31%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV---NAPPIFIQRPVSTTYSTGSTSRIT 66
L I V + + GRYS A N +G + V APP F+QR S T GS R+
Sbjct: 65 LTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQ 124
Query: 67 CLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG--FVLVLNGVRESDAGVYNCVAQNSEGS 124
V G P P + ++ DG + S +G + L++ D+G Y+ A NS G
Sbjct: 125 VRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGR 184
Query: 125 AESVAMIRI 133
A S A + +
Sbjct: 185 ATSTAELLV 193
Score = 89.4 bits (222), Expect = 2e-20
Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 8/111 (7%)
Query: 321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT-----G 375
+AP + GS+ G P+P +SW +D + +
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 376 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPS 426
L + + +SG Y A+N G+ + L V E P+ +
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAE---TAPPNFVQRLQ 111
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 178 bits (454), Expect = 1e-51
Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 3/186 (1%)
Query: 42 VNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLD-SDDHVTYEHDGFV 100
+ P+ + + C VE +P P+++W + + D + +G +
Sbjct: 4 LPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQL 63
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC 160
L + V +SD G+Y C A N G A + + P++ P +++ G +PC
Sbjct: 64 LTILSVEDSDDGIYCCTANNGVGGAVE-SCGALQVKMKPKITRPPINVKIIEGLKAVLPC 122
Query: 161 KPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE 220
G P P +SW K ++ E+ + +GSLR++N+ +D+G YRC A N LG ++
Sbjct: 123 TTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSK 182
Query: 221 G-YLTV 225
L V
Sbjct: 183 LVKLEV 188
Score = 177 bits (451), Expect = 3e-51
Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 3/184 (1%)
Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLD-SDDHVTYEHDGFVLV 286
P+ + + C VE +P P+++W + + D + +G +L
Sbjct: 6 KAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLT 65
Query: 287 LNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKP 346
+ V +SD G+Y C A N G A + + P++ P +++ G +PC
Sbjct: 66 ILSVEDSDDGIYCCTANNGVGGAVE-SCGALQVKMKPKITRPPINVKIIEGLKAVLPCTT 124
Query: 347 DGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG- 405
G P P +SW K ++ E+ + +GSLR++N+ +D+G YRC A N LG ++
Sbjct: 125 MGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLV 184
Query: 406 YLTV 409
L V
Sbjct: 185 KLEV 188
Score = 169 bits (431), Expect = 2e-48
Identities = 43/182 (23%), Positives = 79/182 (43%), Gaps = 5/182 (2%)
Query: 136 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT---GS 192
+AP + + A C + P P ISW+++ ++ + +
Sbjct: 5 PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRN-KILIKLFDTRYSIRENGQL 63
Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCL 252
L + ++ D G+Y CTA+N +G V P + P++ G + + C
Sbjct: 64 LTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCT 123
Query: 253 VEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESV 312
G+P P ++W ++L + + G L ++ V++ DAG Y CVA+NS G+A S
Sbjct: 124 TMGNPKPSVSWIKGDSALRENSRIAVLESG-SLRIHNVQKEDAGQYRCVAKNSLGTAYSK 182
Query: 313 AM 314
+
Sbjct: 183 LV 184
Score = 125 bits (317), Expect = 3e-33
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 2/126 (1%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAG-VYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSR 64
+ L I V+ G Y C A N G + V P + P++ G +
Sbjct: 60 NGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAV 119
Query: 65 ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 124
+ C G+P P ++W ++L + + G L ++ V++ DAG Y CVA+NS G+
Sbjct: 120 LPCTTMGNPKPSVSWIKGDSALRENSRIAVLESG-SLRIHNVQKEDAGQYRCVAKNSLGT 178
Query: 125 AESVAM 130
A S +
Sbjct: 179 AYSKLV 184
Score = 85.2 bits (211), Expect = 4e-19
Identities = 23/110 (20%), Positives = 42/110 (38%), Gaps = 9/110 (8%)
Query: 320 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT---GS 376
+AP + + A C + P P ISW+++ ++ + +
Sbjct: 5 PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRN-KILIKLFDTRYSIRENGQL 63
Query: 377 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPS 426
L + ++ D G+Y CTA+N +G V V+ P +R P
Sbjct: 64 LTILSVEDSDDGIYCCTANNGVGGAVESCGA-----LQVKMKPKITRPPI 108
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 189 bits (479), Expect = 4e-51
Identities = 71/500 (14%), Positives = 144/500 (28%), Gaps = 75/500 (15%)
Query: 1 TDDRRSST-ELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYST 59
T+ + T + I+ + ++ GRY C G + D+ + V+ P + T
Sbjct: 67 TNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDL 126
Query: 60 GSTSRITCLVEGHPLPQMTWFHDGN--------------SLDSDDHVTYEHDG-----FV 100
G T I C + + + + + + + G F
Sbjct: 127 GRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFS 186
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFD-------MRAPAG 153
+V+N +R SDAG Y C A + S + A +++ + +
Sbjct: 187 VVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVA 246
Query: 154 SSVEIPCKPDGEPLPRISWSKDEAEFVEDRN------HKIHRTGSLRLYNIGPQDSGLYR 207
+ + C+ + + + S+ + + +D+G Y
Sbjct: 247 NVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYL 306
Query: 208 CTASNLLGEDVAEGYLTVT---GAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQ-MTW 263
C A + + P GS+ + C W
Sbjct: 307 CGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYW 366
Query: 264 FHDGNSLDSDDHVTYEHDG--------------------FVLVLNGVRESDAGVYNCVAQ 303
+ + + + +G F ++LN + DAG Y C+
Sbjct: 367 CLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTN 426
Query: 304 NSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC----KPDGEPLPRISWSKD 359
+V I + P ++ A G ++++PC K W+
Sbjct: 427 GDTLWRTTVE---IKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNT 483
Query: 360 EAEFVEDRNHKIHR----------TGSLRLYNIGPQDSGLYRCTASNLLGEDV-AEGYLT 408
+ + ++ + SL L + D G Y C A Y+
Sbjct: 484 GCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVA 543
Query: 409 VTGENSVEPAPHTSREPSAS 428
V + + + A+
Sbjct: 544 VEERKAAGSRDVSLAKADAA 563
Score = 126 bits (316), Expect = 3e-30
Identities = 44/321 (13%), Positives = 86/321 (26%), Gaps = 55/321 (17%)
Query: 142 VVKPFDMRAPAGSSVEIPCKPD---GEPLPRISWSKDEAEF------------------- 179
+ P ++ + G+SV I C R W + A
Sbjct: 4 IFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGR 63
Query: 180 VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVST 239
N + T + + + DSG Y+C + L P +
Sbjct: 64 ANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLE-VSQGPGLLNDTKVY 122
Query: 240 TYSTGSTSRITCLVEGHPLPQMTWFHDGN--------------SLDSDDHVTYEHDG--- 282
T G T I C + + + + + + + G
Sbjct: 123 TVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQ 182
Query: 283 --FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFD-------MR 333
F +V+N +R SDAG Y C A + S + A +++ + +
Sbjct: 183 LLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALG 242
Query: 334 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRN------HKIHRTGSLRLYNIGPQDS 387
+ + C+ + + + S+ + + +D+
Sbjct: 243 PEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDA 302
Query: 388 GLYRCTASNLLGEDVAEGYLT 408
G Y C A +
Sbjct: 303 GRYLCGAHSDGQLQEGSPIQA 323
Score = 48.1 bits (113), Expect = 1e-05
Identities = 18/129 (13%), Positives = 34/129 (26%), Gaps = 22/129 (17%)
Query: 326 VVKPFDMRAPAGSSVEIPCKPD---GEPLPRISWSKDEAEF------------------- 363
+ P ++ + G+SV I C R W + A
Sbjct: 4 IFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGR 63
Query: 364 VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSR 423
N + T + + + DSG Y+C + L V+ +
Sbjct: 64 ANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYT 123
Query: 424 EPSASKPSV 432
++
Sbjct: 124 VDLGRTVTI 132
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 177 bits (451), Expect = 4e-51
Identities = 48/208 (23%), Positives = 76/208 (36%), Gaps = 13/208 (6%)
Query: 41 TVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD--HVTYEHDG 98
T PP I++P + G + C G P P + W +G + + E G
Sbjct: 2 TGAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPG 61
Query: 99 FVLVLN---GVRESDAGVYNCVAQNSEGSAES------VAMIRINGHRAPRLVVKPFDMR 149
+ +L D Y CVA+N G A S + P + P
Sbjct: 62 GISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRV 121
Query: 150 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCT 209
G +V + CK G P P I W K++ + + G L++ N +D G Y C
Sbjct: 122 IEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECV 181
Query: 210 ASNLLGEDVAEG-YLTVTGAPPIFIQRP 236
A N +G + ++ L V + +
Sbjct: 182 AENSMGTEHSKATNLYVK-VRRVGTKHH 208
Score = 166 bits (423), Expect = 3e-47
Identities = 51/209 (24%), Positives = 77/209 (36%), Gaps = 13/209 (6%)
Query: 226 TGA-PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD--HVTYEHDG 282
TGA PP I++P + G + C G P P + W +G + + E G
Sbjct: 2 TGAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPG 61
Query: 283 FVLVLN---GVRESDAGVYNCVAQNSEGSAES------VAMIRINGHRAPRLVVKPFDMR 333
+ +L D Y CVA+N G A S + P + P
Sbjct: 62 GISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRV 121
Query: 334 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCT 393
G +V + CK G P P I W K++ + + G L++ N +D G Y C
Sbjct: 122 IEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECV 181
Query: 394 ASNLLGEDVAEG-YLTVTGENSVEPAPHT 421
A N +G + ++ L V H
Sbjct: 182 AENSMGTEHSKATNLYVKVRRVGTKHHHH 210
Score = 105 bits (264), Expect = 7e-26
Identities = 39/147 (26%), Positives = 55/147 (37%), Gaps = 22/147 (14%)
Query: 10 LVISGVQR----EHGGRYSCVAGNPAGVY---RGDLHVTVNA-----PPIFIQRPVSTTY 57
+ I ++ Y CVA N G L + P+ Q P +
Sbjct: 63 ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVI 122
Query: 58 STGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCV 117
G T +TC G+P P + W + +D + DG L + RE D G Y CV
Sbjct: 123 EVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDG-FLQIENSREEDQGKYECV 181
Query: 118 AQNSEGSAESVAMIRINGHRAPRLVVK 144
A+NS G+ S +A L VK
Sbjct: 182 AENSMGTEHS---------KATNLYVK 199
Score = 50.9 bits (122), Expect = 3e-07
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 1 TDDRRSSTE---LVISGVQREHGGRYSCVAGNPAG-VYRGDLHVTVNAPPIFIQRP 52
+ R S + L I + E G+Y CVA N G + ++ V + +
Sbjct: 153 MSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVGTKHH 208
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 176 bits (447), Expect = 1e-50
Identities = 45/195 (23%), Positives = 74/195 (37%), Gaps = 11/195 (5%)
Query: 227 GAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH----VTYEHDG 282
P F + + S + + C V GHP P + W+ G + +D ++
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 283 FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN---GHRAPRLVVKPFDMRAPAGSS 339
L++ V + DA VY A N GS A + + P+ + + A G
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEV 121
Query: 340 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLR----LYNIGPQDSGLYRCTAS 395
V I G+P P I+W K + + ++++ T S + +D+G Y A
Sbjct: 122 VSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAK 181
Query: 396 NLLGEDVAEGYLTVT 410
N G D L V
Sbjct: 182 NRFGIDQKTVELDVA 196
Score = 175 bits (445), Expect = 2e-50
Identities = 45/193 (23%), Positives = 74/193 (38%), Gaps = 11/193 (5%)
Query: 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH----VTYEHDGFV 100
P F + + S + + C V GHP P + W+ G + +D ++
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN---GHRAPRLVVKPFDMRAPAGSSVE 157
L++ V + DA VY A N GS A + + P+ + + A G V
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123
Query: 158 IPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLR----LYNIGPQDSGLYRCTASNL 213
I G+P P I+W K + + ++++ T S + +D+G Y A N
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183
Query: 214 LGEDVAEGYLTVT 226
G D L V
Sbjct: 184 FGIDQKTVELDVA 196
Score = 167 bits (424), Expect = 1e-47
Identities = 40/195 (20%), Positives = 71/195 (36%), Gaps = 12/195 (6%)
Query: 135 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAE-FVEDRNHKIHR---- 189
G AP + ++ S+ + CK G P P + W + E + ++I
Sbjct: 1 GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 190 TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV----TGAPPIFIQRPVSTTYSTGS 245
L + ++ D+ +Y+ A+N G L V P ++ + G
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGE 120
Query: 246 TSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG---FVLVLNGVRESDAGVYNCVA 302
I G P P +TW + +D++ H ++ NGV DAG Y A
Sbjct: 121 VVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 180
Query: 303 QNSEGSAESVAMIRI 317
+N G + + +
Sbjct: 181 KNRFGIDQKTVELDV 195
Score = 122 bits (308), Expect = 6e-32
Identities = 30/132 (22%), Positives = 48/132 (36%), Gaps = 8/132 (6%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAP-----PIFIQRPVSTTYSTGSTSR 64
L+I+ V + Y A N G G + V P P ++ + G
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123
Query: 65 ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG---FVLVLNGVRESDAGVYNCVAQNS 121
I G P P +TW + +D++ H ++ NGV DAG Y A+N
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183
Query: 122 EGSAESVAMIRI 133
G + + +
Sbjct: 184 FGIDQKTVELDV 195
Score = 85.9 bits (213), Expect = 3e-19
Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 6/113 (5%)
Query: 319 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAE-FVEDRNHKIHR---- 373
G AP + ++ S+ + CK G P P + W + E + ++I
Sbjct: 1 GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 374 TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPS 426
L + ++ D+ +Y+ A+N G L V + P T
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHL-PKTLEGMG 112
Score = 43.9 bits (104), Expect = 6e-05
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV 42
R ++ + +GV+R+ G Y A N G+ + + + V
Sbjct: 154 IVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 181 bits (459), Expect = 1e-50
Identities = 54/315 (17%), Positives = 93/315 (29%), Gaps = 44/315 (13%)
Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCKP-------DGEPLPRISWSKD--EAEFVEDRNHKI 187
G V + C P ++W K+ + ++
Sbjct: 17 SCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRM 76
Query: 188 H-RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPV-STTYSTGS 245
+ G+L L +DSG Y CT N D L V F+ + +
Sbjct: 77 WAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLST 136
Query: 246 TSRITC-----LVEGHPLPQMTWFHDGNSLDSDD-HVTYEHDGFVLVLNGVRESDAGVYN 299
+ + C ++ W+ D LD D+ L+++ V DAG Y
Sbjct: 137 SGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYR 196
Query: 300 CVAQNSEGSAESVAMIRIN-------GHRAPRLVVKPFDMRAPAGSSVEIPCK---PDGE 349
CV + + I P ++ + A GS + IPCK G
Sbjct: 197 CVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGT 256
Query: 350 PLPRISWSKDEAEFVED----------------RNHKIHRTGSLRLYNIGPQDSGL-YRC 392
PL + W +E N++ + L + +D + ++C
Sbjct: 257 PLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKC 316
Query: 393 TASNLLGEDVAEGYL 407
N L +
Sbjct: 317 VVHNTLSFQTLRTTV 331
Score = 177 bits (451), Expect = 2e-49
Identities = 49/320 (15%), Positives = 97/320 (30%), Gaps = 43/320 (13%)
Query: 40 VTVNAPPIFIQRPVSTTYSTGSTSRITC-------LVEGHPLPQMTWFHDGNSLD--SDD 90
+ + G + C P +TW + ++ ++
Sbjct: 13 GAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEE 72
Query: 91 HVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRA 150
L L + D+G Y C +N+ + +R+ + L +
Sbjct: 73 ETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQIL 132
Query: 151 PAGSSVEIPC-----KPDGEPLPRISWSKDEAEFVEDRNHKIH--RTGSLRLYNIGPQDS 203
+S + C + +I W KD +D + T L ++++ +D+
Sbjct: 133 TLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDA 192
Query: 204 GLYRCTASNLLGEDVAEGYLTV--------TGAPPIFIQRPVSTTYSTGSTSRITCLV-- 253
G YRC + ++ P+ I + + S GS I C V
Sbjct: 193 GYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFL 252
Query: 254 -EGHPLPQMTWF-HDGNSLDSDDHVTYEHDG--------------FVLVLNGVRESDAGV 297
G PL M W+ + ++S +G L+ + V D +
Sbjct: 253 GTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHM 312
Query: 298 -YNCVAQNSEGSAESVAMIR 316
+ CV N+ ++
Sbjct: 313 DFKCVVHNTLSFQTLRTTVK 332
Score = 152 bits (384), Expect = 1e-40
Identities = 42/249 (16%), Positives = 77/249 (30%), Gaps = 35/249 (14%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNA-PPIFIQRPV-STTYSTGSTSRITC 67
L + +E G Y C N + + + + V F+ + ++ + C
Sbjct: 83 LWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVC 142
Query: 68 -----LVEGHPLPQMTWFHDGNSLDSDD-HVTYEHDGFVLVLNGVRESDAGVYNCVAQNS 121
++ W+ D LD D+ L+++ V DAG Y CV +
Sbjct: 143 PDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFA 202
Query: 122 EGSAESVAMIRIN-------GHRAPRLVVKPFDMRAPAGSSVEIPCK---PDGEPLPRIS 171
+ I P ++ + A GS + IPCK G PL +
Sbjct: 203 HEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTML 262
Query: 172 WSKDEAEFVED----------------RNHKIHRTGSLRLYNIGPQDSGL-YRCTASNLL 214
W +E N++ + L + +D + ++C N L
Sbjct: 263 WWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTL 322
Query: 215 GEDVAEGYL 223
+
Sbjct: 323 SFQTLRTTV 331
Score = 126 bits (317), Expect = 9e-32
Identities = 30/218 (13%), Positives = 64/218 (29%), Gaps = 19/218 (8%)
Query: 228 APPIFIQRPVSTTYSTGSTSRITC-------LVEGHPLPQMTWFHDGNSLD--SDDHVTY 278
+ + G + C P +TW + ++ ++
Sbjct: 17 SCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRM 76
Query: 279 EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGS 338
L L + D+G Y C +N+ + +R+ + L + +
Sbjct: 77 WAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLST 136
Query: 339 SVEIPC-----KPDGEPLPRISWSKDEAEFVEDRNHKIH--RTGSLRLYNIGPQDSGLYR 391
S + C + +I W KD +D + T L ++++ +D+G YR
Sbjct: 137 SGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYR 196
Query: 392 CTASNLLGEDVAEGYLTVT---GENSVEPAPHTSREPS 426
C + ++ + E P
Sbjct: 197 CVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLK 234
Score = 90.5 bits (224), Expect = 1e-19
Identities = 30/156 (19%), Positives = 53/156 (33%), Gaps = 28/156 (17%)
Query: 5 RSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVN---------APPIFIQRPVST 55
R +T L++ V E G Y CV + ++ ++ P+ I +
Sbjct: 177 RGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTI 236
Query: 56 TYSTGSTSRITCLV---EGHPLPQMTWF-HDGNSLDSDDHVTYEHDG------------- 98
+ S GS I C V G PL M W+ + ++S +G
Sbjct: 237 SASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYI 296
Query: 99 -FVLVLNGVRESDAGV-YNCVAQNSEGSAESVAMIR 132
L+ + V D + + CV N+ ++
Sbjct: 297 EVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVK 332
Score = 68.6 bits (167), Expect = 2e-12
Identities = 23/146 (15%), Positives = 37/146 (25%), Gaps = 15/146 (10%)
Query: 321 RAPRLVVKPFDMRAPAGSSVEIPCKP-------DGEPLPRISWSKD--EAEFVEDRNHKI 371
G V + C P ++W K+ + ++
Sbjct: 17 SCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRM 76
Query: 372 H-RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKP 430
+ G+L L +DSG Y CT N D L V E S +
Sbjct: 77 WAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRV-----FENTDAFLPFISYPQI 131
Query: 431 SVADDTIHMAVKLASREVDAAVNATI 456
+ + S + I
Sbjct: 132 LTLSTSGVLVCPDLSEFTRDKTDVKI 157
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 173 bits (441), Expect = 7e-50
Identities = 42/195 (21%), Positives = 75/195 (38%), Gaps = 11/195 (5%)
Query: 225 VTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG-- 282
++G P + T G ++++C + G PLP + W+ G L DG
Sbjct: 3 MSGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRT 62
Query: 283 FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPF---DMRAPAGSS 339
L + + D GVY C+A N G E+ + + + P+ GS+
Sbjct: 63 HTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLL--QATPQFHPGYPLKEKYYGAVGST 120
Query: 340 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQ-DSGLYRCTAS 395
+ + G P+P ++W + N I T L + N+ + +G Y+ S
Sbjct: 121 LRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLS 180
Query: 396 NLLGEDVAEGYLTVT 410
N+ G A + +
Sbjct: 181 NVFGTVDAILDVEIQ 195
Score = 170 bits (433), Expect = 1e-48
Identities = 41/191 (21%), Positives = 72/191 (37%), Gaps = 11/191 (5%)
Query: 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG--FVLV 102
P + T G ++++C + G PLP + W+ G L DG L
Sbjct: 7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLT 66
Query: 103 LNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPF---DMRAPAGSSVEIP 159
+ + D GVY C+A N G E+ + + + P+ GS++ +
Sbjct: 67 VMTEEQEDEGVYTCIATNEVGEVETSSKLLL--QATPQFHPGYPLKEKYYGAVGSTLRLH 124
Query: 160 CKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQ-DSGLYRCTASNLLG 215
G P+P ++W + N I T L + N+ + +G Y+ SN+ G
Sbjct: 125 VMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFG 184
Query: 216 EDVAEGYLTVT 226
A + +
Sbjct: 185 TVDAILDVEIQ 195
Score = 167 bits (426), Expect = 7e-48
Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 8/188 (4%)
Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLR 194
AP + + D+ G + ++ C+ G PLP I W + E ++ R +K+ G +L
Sbjct: 7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLT 66
Query: 195 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPV--STTYSTGSTSRITCL 252
+ +D G+Y C A+N +GE L + P P+ + GST R+ +
Sbjct: 67 VMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVM 126
Query: 253 VEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVL---NGVRESDAGVYNCVAQNSEGSA 309
G P+P MTWFH L + +++T E+ L N R++ AG Y N G+
Sbjct: 127 YIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTV 186
Query: 310 ESVAMIRI 317
+++ + I
Sbjct: 187 DAILDVEI 194
Score = 117 bits (296), Expect = 3e-30
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 6/130 (4%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPV---STTYSTGSTSRIT 66
L + ++E G Y+C+A N G + + A P F + GST R+
Sbjct: 65 LTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLH 124
Query: 67 CLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVL---NGVRESDAGVYNCVAQNSEG 123
+ G P+P MTWFH L + +++T E+ L N R++ AG Y N G
Sbjct: 125 VMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFG 184
Query: 124 SAESVAMIRI 133
+ +++ + I
Sbjct: 185 TVDAILDVEI 194
Score = 89.8 bits (223), Expect = 1e-20
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLR 378
AP + + D+ G + ++ C+ G PLP I W + E ++ R +K+ G +L
Sbjct: 7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLT 66
Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAP 419
+ +D G+Y C A+N +GE L + P
Sbjct: 67 VMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGY 107
Score = 39.7 bits (93), Expect = 0.002
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 7 STELVISGVQRE-HGGRYSCVAGNPAGVYRGDLHVTV 42
T LV+ VQR+ H G+Y N G L V +
Sbjct: 158 YTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEI 194
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 174 bits (443), Expect = 8e-49
Identities = 52/307 (16%), Positives = 89/307 (28%), Gaps = 37/307 (12%)
Query: 45 PPIFIQR--PVSTTYSTGSTSRITCLVEGHP-LPQMTWFHDGNSL--DSDDHVTYEHDGF 99
+R + S C + + +TW+ D + ++
Sbjct: 3 ADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKE 62
Query: 100 VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVK--PFDMRAPAGSSVE 157
L + D+G Y CV +NS + + F + P
Sbjct: 63 KLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGG 122
Query: 158 IPC------KPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTAS 211
+ C K + LP++ W KD + D H L + N+ + G Y C AS
Sbjct: 123 LVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHAS 182
Query: 212 NLLGEDV----AEGYLTVTG----APPIFIQRPVST-TYSTGSTSRITCLVEGHPLPQMT 262
P+ + T GS ++ C V G
Sbjct: 183 YTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAY 242
Query: 263 WFHDGNSLDSDDHVTYEHDGF--------------VLVLNGVRESD-AGVYNCVAQNSEG 307
W +G+ +D DD V E VL ++ + + C A+N+ G
Sbjct: 243 WKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHG 302
Query: 308 SAESVAM 314
+
Sbjct: 303 IDAAYIQ 309
Score = 174 bits (442), Expect = 1e-48
Identities = 54/303 (17%), Positives = 90/303 (29%), Gaps = 38/303 (12%)
Query: 144 KPFDMRAPAGSSVEIPCKPDG-EPLPRISWSKDEAEFV--EDRNHKIH-RTGSLRLYNIG 199
+ + + A PC + E I+W KD+++ ++ +IH L
Sbjct: 11 EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAK 70
Query: 200 PQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFI---QRPVSTTYSTGSTSRITCL---- 252
+DSG Y C N + P Q + C
Sbjct: 71 VEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEF 130
Query: 253 --VEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE 310
E + LP++ W+ D L D+ L++ V E G Y C A + +
Sbjct: 131 FKNENNELPKLQWYKDCKPLLLDNIHFSGVKD-RLIVMNVAEKHRGNYTCHASYTYLGKQ 189
Query: 311 S-------VAMIRINGHRAPRLVVKPFD-MRAPAGSSVEIPCKPDGEPLPRISWSKDEAE 362
+ N P +V + M GS +++ C G+ W + +
Sbjct: 190 YPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSV 249
Query: 363 FVEDRN---------------HKIHRTGSLRLYNIGPQD-SGLYRCTASNLLGEDVAEGY 406
ED + L + I + + C A N G D A
Sbjct: 250 IDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQ 309
Query: 407 LTV 409
L
Sbjct: 310 LIY 312
Score = 150 bits (380), Expect = 2e-40
Identities = 45/250 (18%), Positives = 71/250 (28%), Gaps = 35/250 (14%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV-NAPPIFI---QRPVSTTYSTGSTSRI 65
L + E G Y CV N + R + P Q +
Sbjct: 64 LWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGL 123
Query: 66 TCL------VEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 119
C E + LP++ W+ D L D+ L++ V E G Y C A
Sbjct: 124 VCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD-RLIVMNVAEKHRGNYTCHAS 182
Query: 120 NSEGSAES-------VAMIRINGHRAPRLVVKPFD-MRAPAGSSVEIPCKPDGEPLPRIS 171
+ + + N P +V + M GS +++ C G+
Sbjct: 183 YTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAY 242
Query: 172 WSKDEAEFVEDRN---------------HKIHRTGSLRLYNIGPQD-SGLYRCTASNLLG 215
W + + ED + L + I + + C A N G
Sbjct: 243 WKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHG 302
Query: 216 EDVAEGYLTV 225
D A L
Sbjct: 303 IDAAYIQLIY 312
Score = 121 bits (305), Expect = 2e-30
Identities = 34/206 (16%), Positives = 57/206 (27%), Gaps = 17/206 (8%)
Query: 229 PPIFIQR--PVSTTYSTGSTSRITCLVEGHP-LPQMTWFHDGNSL--DSDDHVTYEHDGF 283
+R + S C + + +TW+ D + ++
Sbjct: 3 ADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKE 62
Query: 284 VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVK--PFDMRAPAGSSVE 341
L + D+G Y CV +NS + + F + P
Sbjct: 63 KLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGG 122
Query: 342 IPC------KPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTAS 395
+ C K + LP++ W KD + D H L + N+ + G Y C AS
Sbjct: 123 LVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHAS 182
Query: 396 NLLGEDV----AEGYLTVTGENSVEP 417
EN
Sbjct: 183 YTYLGKQYPITRVIEFITLEENKPTR 208
Score = 93.6 bits (232), Expect = 6e-21
Identities = 27/150 (18%), Positives = 48/150 (32%), Gaps = 25/150 (16%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVN---------APPIFIQRPVST- 55
L++ V +H G Y+C A + + + P+ + T
Sbjct: 160 VKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETM 219
Query: 56 TYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF--------------VL 101
GS ++ C V G W +G+ +D DD V E VL
Sbjct: 220 EVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVL 279
Query: 102 VLNGVRESD-AGVYNCVAQNSEGSAESVAM 130
++ + + C A+N+ G +
Sbjct: 280 NISEIESRFYKHPFTCFAKNTHGIDAAYIQ 309
Score = 63.2 bits (153), Expect = 1e-10
Identities = 21/109 (19%), Positives = 35/109 (32%), Gaps = 9/109 (8%)
Query: 328 KPFDMRAPAGSSVEIPCKPDG-EPLPRISWSKDEAEFV--EDRNHKIH-RTGSLRLYNIG 383
+ + + A PC + E I+W KD+++ ++ +IH L
Sbjct: 11 EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAK 70
Query: 384 PQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSV 432
+DSG Y C N + VE P+ A
Sbjct: 71 VEDSGHYYCVVRNSSYCLRIKISAKF-----VENEPNLCYNAQAIFKQK 114
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 170 bits (432), Expect = 2e-48
Identities = 51/206 (24%), Positives = 75/206 (36%), Gaps = 16/206 (7%)
Query: 41 TVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD-HVTYEHDG- 98
T PP F + PV T +G + C G P P++ W G + + V DG
Sbjct: 2 TGETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGS 61
Query: 99 -FVLVLNGVR-ESDAGVYNCVAQNSEGSAESVAMIRING-----HRAPRLVVKPFDMRAP 151
VL + +R D +Y CVA N+ G + + P + + P
Sbjct: 62 GSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVE 121
Query: 152 AGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR------TGSLRLYNIGPQDSGL 205
+ + C G P P I+W KD N+ + G+L++ D G
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGK 181
Query: 206 YRCTASNLLGEDV-AEGYLTVTGAPP 230
Y C A+N G A L V G
Sbjct: 182 YECVATNSAGTRYSAPANLYVRGTKH 207
Score = 162 bits (412), Expect = 9e-46
Identities = 54/193 (27%), Positives = 75/193 (38%), Gaps = 16/193 (8%)
Query: 135 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT---- 190
G PR P D +G C+ G+P P+I W+K + R I
Sbjct: 3 GETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSG 62
Query: 191 GSLRLYNIG-PQDSGLYRCTASNLLGEDVAEGYLTVTG------APPIFIQRPVSTTYST 243
LR+ + P+D +Y C ASN +GE LTV P P
Sbjct: 63 SVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVER 122
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDD-----HVTYEHDGFVLVLNGVRESDAGVY 298
T+ + C G+P P++TWF D +D+ + L + ESD G Y
Sbjct: 123 TRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKY 182
Query: 299 NCVAQNSEGSAES 311
CVA NS G+ S
Sbjct: 183 ECVATNSAGTRYS 195
Score = 162 bits (411), Expect = 1e-45
Identities = 50/200 (25%), Positives = 74/200 (37%), Gaps = 16/200 (8%)
Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD-HVTYEHDG--FV 284
PP F + PV T +G + C G P P++ W G + + V DG V
Sbjct: 5 TPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSV 64
Query: 285 LVLNGVR-ESDAGVYNCVAQNSEGSAESVAMIRING-----HRAPRLVVKPFDMRAPAGS 338
L + +R D +Y CVA N+ G + + P + + P
Sbjct: 65 LRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTR 124
Query: 339 SVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR------TGSLRLYNIGPQDSGLYRC 392
+ + C G P P I+W KD N+ + G+L++ D G Y C
Sbjct: 125 TATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYEC 184
Query: 393 TASNLLGEDV-AEGYLTVTG 411
A+N G A L V G
Sbjct: 185 VATNSAGTRYSAPANLYVRG 204
Score = 111 bits (279), Expect = 6e-28
Identities = 36/135 (26%), Positives = 50/135 (37%), Gaps = 13/135 (9%)
Query: 6 SSTELVISGVQR-EHGGRYSCVAGNPAGVYRGDLHVTVNA-------PPIFIQRPVSTTY 57
S + L I ++ Y CVA N G +TV P P
Sbjct: 61 SGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVV 120
Query: 58 STGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD-----HVTYEHDGFVLVLNGVRESDAG 112
T+ + C G+P P++TWF D +D+ + L + ESD G
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQG 180
Query: 113 VYNCVAQNSEGSAES 127
Y CVA NS G+ S
Sbjct: 181 KYECVATNSAGTRYS 195
Score = 88.0 bits (218), Expect = 8e-20
Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 5/106 (4%)
Query: 319 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT---- 374
G PR P D +G C+ G+P P+I W+K + R I
Sbjct: 3 GETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSG 62
Query: 375 GSLRLYNIG-PQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAP 419
LR+ + P+D +Y C ASN +GE LTV E+ +
Sbjct: 63 SVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGF 108
Score = 45.2 bits (107), Expect = 3e-05
Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGV-YRGDLHVTVNAPPIFIQR 51
S L I + G+Y CVA N AG Y ++ V
Sbjct: 165 SIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKHHHHH 211
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 169 bits (429), Expect = 2e-48
Identities = 41/186 (22%), Positives = 73/186 (39%), Gaps = 4/186 (2%)
Query: 44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE-HDGFVLV 102
+ F + + G + + C V P P ++W + + + + L
Sbjct: 1 SMLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQ 60
Query: 103 LNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVV--KPFDMRAPAGSSVEIPC 160
+ + +SD G+Y C + I + + P + + K F+ A G + C
Sbjct: 61 ILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSC 120
Query: 161 KPDGEPLPRISWSKDEAEFVEDRNHKI-HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA 219
+ G P P ISW ++ E+ + + L + NI D G Y C A+N GED
Sbjct: 121 RASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEK 180
Query: 220 EGYLTV 225
+ +L V
Sbjct: 181 QAFLQV 186
Score = 169 bits (429), Expect = 2e-48
Identities = 41/186 (22%), Positives = 73/186 (39%), Gaps = 4/186 (2%)
Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE-HDGFVLV 286
+ F + + G + + C V P P ++W + + + + L
Sbjct: 1 SMLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQ 60
Query: 287 LNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVV--KPFDMRAPAGSSVEIPC 344
+ + +SD G+Y C + I + + P + + K F+ A G + C
Sbjct: 61 ILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSC 120
Query: 345 KPDGEPLPRISWSKDEAEFVEDRNHKI-HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA 403
+ G P P ISW ++ E+ + + L + NI D G Y C A+N GED
Sbjct: 121 RASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEK 180
Query: 404 EGYLTV 409
+ +L V
Sbjct: 181 QAFLQV 186
Score = 167 bits (424), Expect = 9e-48
Identities = 41/185 (22%), Positives = 69/185 (37%), Gaps = 5/185 (2%)
Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT--GSLRL 195
G E+ C+ P P +SW E +++ +L++
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQI 61
Query: 196 YNIGPQDSGLYRCTASNL-LGEDVAEGYLTVTGAPPIFI--QRPVSTTYSTGSTSRITCL 252
NI D G+YRC GE + + PP Q+ + T G +C
Sbjct: 62 LNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCR 121
Query: 253 VEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESV 312
G P P ++WF +G ++ ++ + L + + SD G Y C A N G E
Sbjct: 122 ASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQ 181
Query: 313 AMIRI 317
A +++
Sbjct: 182 AFLQV 186
Score = 126 bits (319), Expect = 2e-33
Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 4/128 (3%)
Query: 10 LVISGVQREHGGRYSCVAGNPAG--VYRGDLHVTVNAPPIFI--QRPVSTTYSTGSTSRI 65
L I + + G Y C A + D+ V VN PP Q+ + T G
Sbjct: 59 LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTF 118
Query: 66 TCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA 125
+C G P P ++WF +G ++ ++ + L + + SD G Y C A N G
Sbjct: 119 SCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGED 178
Query: 126 ESVAMIRI 133
E A +++
Sbjct: 179 EKQAFLQV 186
Score = 83.3 bits (206), Expect = 2e-18
Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 4/107 (3%)
Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT--GSLRL 379
G E+ C+ P P +SW E +++ +L++
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQI 61
Query: 380 YNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPS 426
NI D G+YRC ++ + V V PA ++
Sbjct: 62 LNINKSDEGIYRCEGRVEARGEIDFRDIIVIVN--VPPAISMPQKSF 106
Score = 43.6 bits (103), Expect = 8e-05
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNA 44
S+TEL + + GG Y C A N AG + V
Sbjct: 150 SNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 188
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 168 bits (428), Expect = 3e-48
Identities = 37/187 (19%), Positives = 65/187 (34%), Gaps = 5/187 (2%)
Query: 44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG--FVL 101
A S G + TC G P + G + S V + +G L
Sbjct: 1 ALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRL 60
Query: 102 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK 161
+ DAG+Y C A +++G + A + + ++ G E+ C+
Sbjct: 61 TIYNANIEDAGIYRCQATDAKGQTQE-ATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCR 119
Query: 162 PDGEPLPRISWSKDEAEFVEDRNHKIHRT--GSLRLYNIGPQDSGLYRCTASNLLGEDVA 219
P P +SW E +++ +L++ NI D G+YRC ++
Sbjct: 120 VSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEID 179
Query: 220 EGYLTVT 226
+ V
Sbjct: 180 FRDIIVI 186
Score = 168 bits (428), Expect = 3e-48
Identities = 37/187 (19%), Positives = 65/187 (34%), Gaps = 5/187 (2%)
Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG--FVL 285
A S G + TC G P + G + S V + +G L
Sbjct: 1 ALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRL 60
Query: 286 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK 345
+ DAG+Y C A +++G + A + + ++ G E+ C+
Sbjct: 61 TIYNANIEDAGIYRCQATDAKGQTQE-ATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCR 119
Query: 346 PDGEPLPRISWSKDEAEFVEDRNHKIHRT--GSLRLYNIGPQDSGLYRCTASNLLGEDVA 403
P P +SW E +++ +L++ NI D G+YRC ++
Sbjct: 120 VSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEID 179
Query: 404 EGYLTVT 410
+ V
Sbjct: 180 FRDIIVI 186
Score = 161 bits (410), Expect = 9e-46
Identities = 33/185 (17%), Positives = 68/185 (36%), Gaps = 6/185 (3%)
Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLR 194
++ + + G S C GEP ++ + + + + + G L
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLT 61
Query: 195 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVE 254
+YN +D+G+YRC A++ G+ + F + + G + + C V
Sbjct: 62 IYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVS 121
Query: 255 GHPLPQMTWFHDGNSL--DSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESV 312
P P ++W + + SD+ + L + + +SD G+Y C +
Sbjct: 122 SSPAPAVSWLYHNEEVTTISDNRFAMLANN-NLQILNINKSDEGIYRCEGRVEARGEIDF 180
Query: 313 AMIRI 317
I +
Sbjct: 181 RDIIV 185
Score = 118 bits (298), Expect = 9e-31
Identities = 24/127 (18%), Positives = 44/127 (34%), Gaps = 4/127 (3%)
Query: 10 LVISGVQREHGGRYSCVAGNPAG-VYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCL 68
L I E G Y C A + G + + + F + + G + + C
Sbjct: 60 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCR 119
Query: 69 VEGHPLPQMTWFHDGNSL--DSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE 126
V P P ++W + + SD+ + L + + +SD G+Y C +
Sbjct: 120 VSSSPAPAVSWLYHNEEVTTISDNRFAMLANN-NLQILNINKSDEGIYRCEGRVEARGEI 178
Query: 127 SVAMIRI 133
I +
Sbjct: 179 DFRDIIV 185
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 169 bits (430), Expect = 4e-48
Identities = 56/207 (27%), Positives = 83/207 (40%), Gaps = 14/207 (6%)
Query: 42 VNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH----- 96
+ PP ++ P S G + + C EG P P + W+ G +++D H
Sbjct: 6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 97 DGFVLVLN----GVRESDAGVYNCVAQNSEGSAES-VAMIRINGHRAPRLVVKPFDMRAP 151
G + L D GVY CVA+N G A S A + + P D+
Sbjct: 66 SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVA-ILRDDFRQNPSDVMVA 124
Query: 152 AGSSVEIPCKP-DGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTA 210
G + C+P G P P ISW KD + + R G L + D+G Y C
Sbjct: 125 VGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVG 184
Query: 211 SNLLGEDVA-EGYLTVTGAPPIFIQRP 236
+N++GE + LTV P F++
Sbjct: 185 TNMVGERESEVAELTVL-ERPSFVKAA 210
Score = 161 bits (408), Expect = 3e-45
Identities = 57/218 (26%), Positives = 83/218 (38%), Gaps = 19/218 (8%)
Query: 221 GYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH 280
G L PP ++ P S G + + C EG P P + W+ G +++D H
Sbjct: 1 GSLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSH 60
Query: 281 -----DGFVLVLN----GVRESDAGVYNCVAQNSEGSAES-VAMIRINGHRAPRLVVKPF 330
G + L D GVY CVA+N G A S A + + P
Sbjct: 61 RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVA-ILRDDFRQNPS 119
Query: 331 DMRAPAGSSVEIPCKP-DGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGL 389
D+ G + C+P G P P ISW KD + + R G L + D+G
Sbjct: 120 DVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGK 179
Query: 390 YRCTASNLLGEDVA-EGYLTVTGENSVEPAPHTSREPS 426
Y C +N++GE + LT V P + +
Sbjct: 180 YVCVGTNMVGERESEVAELT------VLERPSFVKAAA 211
Score = 158 bits (400), Expect = 4e-44
Identities = 64/207 (30%), Positives = 84/207 (40%), Gaps = 16/207 (7%)
Query: 136 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR-----T 190
PR+V P D+ G + CK +G P P I W K D++ +
Sbjct: 7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPS 66
Query: 191 GSLRLYNIGP-----QDSGLYRCTASNLLGEDV-AEGYLTVTGAPPIFIQRPVSTTYSTG 244
GSL I D G+Y C A N LGE V + L V F Q P + G
Sbjct: 67 GSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVG 126
Query: 245 STSRITCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 303
+ + C GHP P ++W DG+ LD D G L++ R+SDAG Y CV
Sbjct: 127 EPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGG-KLMITYTRKSDAGKYVCVGT 185
Query: 304 NSEGSAES-VAMIRINGHRAPRLVVKP 329
N G ES VA + + P V
Sbjct: 186 NMVGERESEVAELTV--LERPSFVKAA 210
Score = 108 bits (271), Expect = 7e-27
Identities = 44/142 (30%), Positives = 57/142 (40%), Gaps = 7/142 (4%)
Query: 8 TELVISGVQREHGGRYSCVAGNPAG-VYRGDLHVTVNA-PPIFIQRPVSTTYSTGSTSRI 65
+V R G Y CVA N G D + V F Q P + G + +
Sbjct: 72 LRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVM 131
Query: 66 TCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 124
C GHP P ++W DG+ LD D G L++ R+SDAG Y CV N G
Sbjct: 132 ECQPPRGHPEPTISWKKDGSPLDDKDERITIRGG-KLMITYTRKSDAGKYVCVGTNMVGE 190
Query: 125 AES-VAMIRINGHRAPRLVVKP 145
ES VA + + P V
Sbjct: 191 RESEVAELTV--LERPSFVKAA 210
Score = 54.0 bits (130), Expect = 4e-08
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 1 TDDRRSSTE---LVISGVQREHGGRYSCVAGNPAG-VYRGDLHVTVNAPPIFIQRP 52
D R + L+I+ ++ G+Y CV N G +TV P F++
Sbjct: 155 DKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKAA 210
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 168 bits (426), Expect = 6e-48
Identities = 46/193 (23%), Positives = 79/193 (40%), Gaps = 14/193 (7%)
Query: 44 APPI-FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLV 102
P I Q+ + T G +C G P P ++WF +G ++ ++ + L
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELT 61
Query: 103 LNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKP 162
+ + SD G Y C A N G E A +++ P +++ + V + C
Sbjct: 62 VRNIINSDGGPYVCRATNKAGEDEKQAFLQV--FVQPH-IIQLKNETTYENGQVTLVCDA 118
Query: 163 DGEPLPRISWSKDEAEFVEDRNHKI----------HRTGSLRLYNIGPQDSGLYRCTASN 212
+GEP+P I+W + F K H + SL + ++ DSG Y C A++
Sbjct: 119 EGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAAS 178
Query: 213 LLGEDVAEGYLTV 225
+G YL +
Sbjct: 179 RIGGHQKSMYLDI 191
Score = 168 bits (426), Expect = 6e-48
Identities = 46/193 (23%), Positives = 79/193 (40%), Gaps = 14/193 (7%)
Query: 228 APPI-FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLV 286
P I Q+ + T G +C G P P ++WF +G ++ ++ + L
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELT 61
Query: 287 LNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKP 346
+ + SD G Y C A N G E A +++ P +++ + V + C
Sbjct: 62 VRNIINSDGGPYVCRATNKAGEDEKQAFLQV--FVQPH-IIQLKNETTYENGQVTLVCDA 118
Query: 347 DGEPLPRISWSKDEAEFVEDRNHKI----------HRTGSLRLYNIGPQDSGLYRCTASN 396
+GEP+P I+W + F K H + SL + ++ DSG Y C A++
Sbjct: 119 EGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAAS 178
Query: 397 LLGEDVAEGYLTV 409
+G YL +
Sbjct: 179 RIGGHQKSMYLDI 191
Score = 161 bits (408), Expect = 2e-45
Identities = 55/192 (28%), Positives = 82/192 (42%), Gaps = 14/192 (7%)
Query: 138 APRLVV--KPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR-TGSLR 194
P + + K F+ A G + C+ G P P ISW ++ E+ + + L
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELT 61
Query: 195 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVE 254
+ NI D G Y C A+N GED + +L V P IQ TTY + C E
Sbjct: 62 VRNIINSDGGPYVCRATNKAGEDEKQAFLQVF-VQPHIIQLKNETTY-ENGQVTLVCDAE 119
Query: 255 GHPLPQMTWFHDGN---------SLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNS 305
G P+P++TW + SLD V +H L + V+ SD+G Y+C A +
Sbjct: 120 GEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASR 179
Query: 306 EGSAESVAMIRI 317
G + + I
Sbjct: 180 IGGHQKSMYLDI 191
Score = 117 bits (295), Expect = 3e-30
Identities = 41/139 (29%), Positives = 59/139 (42%), Gaps = 10/139 (7%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTS 63
+ S+TEL + + GG Y C A N AG + V P IQ TTY
Sbjct: 54 KGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTY-ENGQV 112
Query: 64 RITCLVEGHPLPQMTWFHDGN---------SLDSDDHVTYEHDGFVLVLNGVRESDAGVY 114
+ C EG P+P++TW + SLD V +H L + V+ SD+G Y
Sbjct: 113 TLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRY 172
Query: 115 NCVAQNSEGSAESVAMIRI 133
+C A + G + + I
Sbjct: 173 DCEAASRIGGHQKSMYLDI 191
Score = 44.4 bits (105), Expect = 4e-05
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV 42
+ S+ L I V+ GRY C A + G ++ +++ +
Sbjct: 150 VKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 191
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 170 bits (431), Expect = 2e-47
Identities = 53/303 (17%), Positives = 93/303 (30%), Gaps = 39/303 (12%)
Query: 142 VVKPFDMRAPAGSSVEIPCKPDGEPLP-----RISWSKD--------------------- 175
V P + G SV +PC + +++W++
Sbjct: 4 VQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESK 63
Query: 176 EAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN-LLGEDVAEGYLTVTGAPPIFIQ 234
EFV R R SLR++ + +D G Y C G + +L V A P
Sbjct: 64 RLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVL-AKPQNTA 122
Query: 235 RPVSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-----LVLN 288
+ C+ G P Q+TW D + + V G V +L
Sbjct: 123 EVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILV 182
Query: 289 GVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFD-MRAPAGSSVEIPCKPD 347
+ D C ++ + + + + P + + +D + + C
Sbjct: 183 PSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDAR 242
Query: 348 GEPLP-RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY 406
P P +WS + + L + + + C +N LG AE
Sbjct: 243 SNPEPTGYNWSTTMGPL---PPFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELT 299
Query: 407 LTV 409
+ V
Sbjct: 300 VQV 302
Score = 161 bits (407), Expect = 5e-44
Identities = 40/225 (17%), Positives = 73/225 (32%), Gaps = 12/225 (5%)
Query: 10 LVISGVQREHGGRYSCVAGN-PAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCL 68
L + G++ E G Y+C+ P G D+ + V A P + C+
Sbjct: 81 LRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCV 140
Query: 69 VE-GHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-----LVLNGVRESDAGVYNCVAQNSE 122
G P Q+TW D + + V G V +L + D C ++
Sbjct: 141 STGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHES 200
Query: 123 GSAESVAMIRINGHRAPRLVVKPFD-MRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFV 180
+ + + + P + + +D + + C P P +WS
Sbjct: 201 FEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPL- 259
Query: 181 EDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
+ + L + + + C +N LG AE + V
Sbjct: 260 --PPFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302
Score = 156 bits (396), Expect = 1e-42
Identities = 48/306 (15%), Positives = 87/306 (28%), Gaps = 40/306 (13%)
Query: 47 IFIQRPVSTTYSTGSTSRITCLVEGHPLP-----QMTWFHDGNSLD-------------- 87
+ +Q P G + + C ++ + Q+TW G S
Sbjct: 2 VVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE 61
Query: 88 ------SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRL 141
+ E L + G+R D G Y C+ + S I + P+
Sbjct: 62 SKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRS-VDIWLRVLAKPQN 120
Query: 142 VVKPFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTG------SLR 194
+ ++ C G P +I+W D +G
Sbjct: 121 TAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWI 180
Query: 195 LYNIGPQDSGLYRCTASN--LLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCL 252
L D C + + LTV P + I + Y + + +TC
Sbjct: 181 LVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCD 240
Query: 253 VEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES 311
+P P W L G L++ V + C N+ G+ ++
Sbjct: 241 ARSNPEPTGYNWSTTMGPLPP----FAVAQGAQLLIRPVDKPINTTLICNVTNALGARQA 296
Query: 312 VAMIRI 317
+++
Sbjct: 297 ELTVQV 302
Score = 97.5 bits (242), Expect = 3e-22
Identities = 19/132 (14%), Positives = 44/132 (33%), Gaps = 8/132 (6%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVN---APPIFIQRPVSTTYSTGST 62
++ ++ + G +C + + L V + P + I + Y +
Sbjct: 175 VTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNE 234
Query: 63 SRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNS 121
+ +TC +P P W L G L++ V + C N+
Sbjct: 235 ATLTCDARSNPEPTGYNWSTTMGPLPP----FAVAQGAQLLIRPVDKPINTTLICNVTNA 290
Query: 122 EGSAESVAMIRI 133
G+ ++ +++
Sbjct: 291 LGARQAELTVQV 302
Score = 92.9 bits (230), Expect = 1e-20
Identities = 34/227 (14%), Positives = 60/227 (26%), Gaps = 35/227 (15%)
Query: 231 IFIQRPVSTTYSTGSTSRITCLVEGHPLP-----QMTWFHDGNSLD-------------- 271
+ +Q P G + + C ++ + Q+TW G S
Sbjct: 2 VVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE 61
Query: 272 ------SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRL 325
+ E L + G+R D G Y C+ + S I + P+
Sbjct: 62 SKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRS-VDIWLRVLAKPQN 120
Query: 326 VVKPFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTG------SLR 378
+ ++ C G P +I+W D +G
Sbjct: 121 TAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWI 180
Query: 379 LYNIGPQDSGLYRCTASN--LLGEDVAEGYLTVTGENSVEPAPHTSR 423
L D C + + LTV V + + +
Sbjct: 181 LVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNN 227
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 169 bits (429), Expect = 4e-47
Identities = 46/286 (16%), Positives = 83/286 (29%), Gaps = 27/286 (9%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNI 198
P + ++ AG ++ + C + W+ ++
Sbjct: 13 PSIHPAQSELIVEAGDTLSLTCIDPDF----VRWTFKTY----FNEMVENKKNEWIQEKA 64
Query: 199 GPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPL 258
+G Y C+ SN L + Y+ V +F+ + S + + C + +
Sbjct: 65 EATRTGTYTCSNSNGLTSSI---YVFVRDPAKLFL-VGLPLFGKEDSDALVRCPLTDPQV 120
Query: 259 PQMTWFH-DGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAM--- 314
Q + DG SL +D + + N R C AQ S
Sbjct: 121 SQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLK 180
Query: 315 IRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKD----------EAEF 363
+R P + V G + + C W K +
Sbjct: 181 VREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNS 240
Query: 364 VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
+ R +L + + DSG++ C A+N G L V
Sbjct: 241 WHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKV 286
Score = 157 bits (398), Expect = 5e-43
Identities = 45/290 (15%), Positives = 82/290 (28%), Gaps = 30/290 (10%)
Query: 44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVL 103
+PP G T +TC+ + W + E+ +
Sbjct: 11 SPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTY-----FNEMVENKKNEWIQ 61
Query: 104 NGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPD 163
+ G Y C N S+ I + +L + + S + C
Sbjct: 62 EKAEATRTGTYTCSNSNGLTSS-----IYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLT 116
Query: 164 GEPLPRISWSK-DEAEFVEDRNHKIHRTGSLRLYNI-GPQDSGLYRCTASNLLGEDVAEG 221
+ + S + D D + + + N+ RC A ++
Sbjct: 117 DPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDK 176
Query: 222 Y-LTVTGA---PPIFIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDHV 276
+ L V A P+ S G T + C ++ W V
Sbjct: 177 FTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQV 236
Query: 277 TYEHDGF---------VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
+ L ++ R D+GV+ C A N+ GSA +++
Sbjct: 237 KHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKV 286
Score = 151 bits (381), Expect = 1e-40
Identities = 40/240 (16%), Positives = 66/240 (27%), Gaps = 18/240 (7%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTG 60
E + + G Y+C N ++V V P +
Sbjct: 50 EMVENKKNEWIQEKAEATRTGTYTCSNSNGLT---SSIYVFVRDPAKLFLVGLPLFGKED 106
Query: 61 STSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 119
S + + C + + Q + DG SL +D + + N R C AQ
Sbjct: 107 SDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQ 166
Query: 120 NSEGSAESVAM---IRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKD 175
S +R P + V G + + C W K
Sbjct: 167 RDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKM 226
Query: 176 ----------EAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
+ + R +L + + DSG++ C A+N G L V
Sbjct: 227 NPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKV 286
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 166 bits (421), Expect = 1e-46
Identities = 54/231 (23%), Positives = 80/231 (34%), Gaps = 25/231 (10%)
Query: 219 AEGYLTVTGAPPIFIQ----RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD 274
A+ V P + + +T R C G+P P ++W +G +
Sbjct: 1 ADPDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEH 60
Query: 275 HV---TYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING---HRAPRLVVK 328
+ H + LV+ V SD G Y CV +N GS + + HR
Sbjct: 61 RIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGL 120
Query: 329 PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH---------------KIHR 373
P + A GS VE CK + P I W K +
Sbjct: 121 PANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEA 180
Query: 374 TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSRE 424
LRL N+ +D G Y C A+N +G +L+V G + E + E
Sbjct: 181 DVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELVEADE 231
Score = 164 bits (417), Expect = 4e-46
Identities = 50/225 (22%), Positives = 77/225 (34%), Gaps = 28/225 (12%)
Query: 44 APPIFIQ----RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEH 96
P + + +T R C G+P P ++W +G + + H
Sbjct: 10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRH 69
Query: 97 DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING---HRAPRLVVKPFDMRAPAG 153
+ LV+ V SD G Y CV +N GS + + HR P + A G
Sbjct: 70 QQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLG 129
Query: 154 SSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH---------------KIHRTGSLRLYNI 198
S VE CK + P I W K + LRL N+
Sbjct: 130 SDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANV 189
Query: 199 GPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPI---FIQRPVSTT 240
+D G Y C A+N +G +L+V G ++ + +
Sbjct: 190 SERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELVEADEAGS 234
Score = 109 bits (273), Expect = 8e-27
Identities = 41/173 (23%), Positives = 51/173 (29%), Gaps = 23/173 (13%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNA-----PPIFIQRPVSTTYS 58
R LV+ V G Y+CV N G R + V P + P + T
Sbjct: 68 RHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAV 127
Query: 59 TGSTSRITCLVEGHPLPQMTWFHDGNSLDS--------------DDHVTYEHDGFVLVLN 104
GS C V P + W S L L
Sbjct: 128 LGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLA 187
Query: 105 GVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVE 157
V E D G Y C A N G AE + ++G RA + A SV
Sbjct: 188 NVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAE----EELVEADEAGSVH 236
Score = 49.9 bits (119), Expect = 1e-06
Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 4/60 (6%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLV 69
L ++ V GG Y C A N GV ++V+ P + V +
Sbjct: 184 LRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELV----EADEAGSVHHHH 239
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 169 bits (428), Expect = 1e-46
Identities = 41/307 (13%), Positives = 79/307 (25%), Gaps = 33/307 (10%)
Query: 41 TVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPL---------PQMTWFHDGNSLDSDDH 91
P ++ + G C L + W G + +
Sbjct: 25 KWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNR 84
Query: 92 VTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAP 151
+G + + N Y C G +R + + P + + +++
Sbjct: 85 RV--KNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGI-VRSHIRKPPSCIPETYELGTH 141
Query: 152 AGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTA 210
+++ C + I+W K+ E + D +L ++N +DSG Y C
Sbjct: 142 DKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYV 201
Query: 211 SNLLGEDVAEGYLTVT--------GAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQM- 261
+ ++ + + G + ITC L
Sbjct: 202 HYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDD 261
Query: 262 ---TWFHDGNSLDSDDHVTYEH-------DGFVLVLNGVRESDAG-VYNCVAQNSEGSAE 310
W + + D Y L V E G Y C N
Sbjct: 262 VLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKT 321
Query: 311 SVAMIRI 317
+ +
Sbjct: 322 LTTTVVL 328
Score = 162 bits (411), Expect = 2e-44
Identities = 45/298 (15%), Positives = 82/298 (27%), Gaps = 34/298 (11%)
Query: 143 VKPFDMRAPAGSSVEIPCKPDGEPLPR---------ISWSKDEAEFVEDRNHKIHRTGSL 193
+ A G C P + L ++W K + G L
Sbjct: 34 GGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKN--GDL 91
Query: 194 RLYNIGPQDSG-LYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCL 252
+ N DS Y CT + G+ V + PP I + C
Sbjct: 92 WIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCG 151
Query: 253 V-EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES 311
+ +TW+ + L D Y G L+++ D+G Y+C + ++
Sbjct: 152 ILYAKHYNNITWYKNNQELIIDGT-KYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKN 210
Query: 312 ------VAMIRINGHRAPRL-VVKPFDMRAPAGSSVEIPCKPDGEPLP----RISWSKD- 359
++ + + R ++ + G I C L I W
Sbjct: 211 DIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPS 270
Query: 360 -------EAEFVEDRNHKIHRTGSLRLYNIGPQDSG-LYRCTASNLLGEDVAEGYLTV 409
+ + +L N+ + G Y C N + + +
Sbjct: 271 GWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328
Score = 150 bits (379), Expect = 4e-40
Identities = 36/248 (14%), Positives = 71/248 (28%), Gaps = 24/248 (9%)
Query: 1 TDDRRSSTELVISGVQRE-HGGRYSCVAGNPAG-VYRGDLHVTVNAPPIFIQRPVSTTYS 58
+ R + +L I+ RY C G +G + + PP I
Sbjct: 82 LNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTH 141
Query: 59 TGSTSRITCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCV 117
+ C + +TW+ + L D Y G L+++ D+G Y+C
Sbjct: 142 DKYGIDLYCGILYAKHYNNITWYKNNQELIIDGT-KYSQSGQNLIIHNPELEDSGRYDCY 200
Query: 118 AQNSEGSAES------VAMIRINGHRAPRL-VVKPFDMRAPAGSSVEIPCKPDGEPLP-- 168
+ ++ ++ + + R ++ + G I C L
Sbjct: 201 VHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVD 260
Query: 169 --RISWSKD--------EAEFVEDRNHKIHRTGSLRLYNIGPQDSG-LYRCTASNLLGED 217
I W + + +L N+ + G Y C N +
Sbjct: 261 DVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDK 320
Query: 218 VAEGYLTV 225
+ +
Sbjct: 321 TLTTTVVL 328
Score = 122 bits (307), Expect = 1e-30
Identities = 30/215 (13%), Positives = 63/215 (29%), Gaps = 14/215 (6%)
Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPL---------PQMTWFHDGNSLDSDDHVTY 278
P ++ + G C L + W G + +
Sbjct: 28 NPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRV- 86
Query: 279 EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGS 338
+G + + N Y C G +R + + P + + +++
Sbjct: 87 -KNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGI-VRSHIRKPPSCIPETYELGTHDKY 144
Query: 339 SVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNL 397
+++ C + I+W K+ E + D +L ++N +DSG Y C
Sbjct: 145 GIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYD 204
Query: 398 LGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSV 432
+ ++ +V P R P +
Sbjct: 205 DVRIKNDIVVSRCKILTVIP-SQDHRFKLILDPKI 238
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 164 bits (417), Expect = 4e-46
Identities = 45/216 (20%), Positives = 69/216 (31%), Gaps = 24/216 (11%)
Query: 40 VTVNAPPIFIQ----RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV--- 92
P + +T + C G+P+P M W +G + +
Sbjct: 10 SNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY 69
Query: 93 TYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING---HRAPRLVVKPFDMR 149
+ + L++ V SD G Y CV +N GS + + HR P +
Sbjct: 70 KVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANAS 129
Query: 150 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRN--------------HKIHRTGSLRL 195
G VE CK + P I W K + L L
Sbjct: 130 TVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLAL 189
Query: 196 YNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPI 231
+N+ D+G Y C SN +G+ +LTV
Sbjct: 190 FNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQA 225
Score = 163 bits (413), Expect = 1e-45
Identities = 47/225 (20%), Positives = 74/225 (32%), Gaps = 30/225 (13%)
Query: 210 ASNLLGEDVAEGYLTVTGAPPIFIQ----RPVSTTYSTGSTSRITCLVEGHPLPQMTWFH 265
A + + E+ P + +T + C G+P+P M W
Sbjct: 2 AEDFVSENSNNK------RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK 55
Query: 266 DGNSLDSDDHV---TYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING--- 319
+G + + + + L++ V SD G Y CV +N GS + +
Sbjct: 56 NGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSR 115
Query: 320 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRN----------- 368
HR P + G VE CK + P I W K +
Sbjct: 116 HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLK 175
Query: 369 ---HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
L L+N+ D+G Y C SN +G+ +LTV
Sbjct: 176 HSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVL 220
Score = 106 bits (266), Expect = 5e-26
Identities = 33/148 (22%), Positives = 45/148 (30%), Gaps = 18/148 (12%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNA-----PPIFIQRPVSTTYS 58
R L++ V G Y+CV N G H+ V P + P + +
Sbjct: 72 RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTV 131
Query: 59 TGSTSRITCLVEGHPLPQMTWFHDGNSLDS-------------DDHVTYEHDGFVLVLNG 105
G C V P + W S + VL L
Sbjct: 132 VGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFN 191
Query: 106 VRESDAGVYNCVAQNSEGSAESVAMIRI 133
V E+DAG Y C N G A A + +
Sbjct: 192 VTEADAGEYICKVSNYIGQANQSAWLTV 219
Score = 91.1 bits (226), Expect = 9e-21
Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 15/125 (12%)
Query: 301 VAQNSEGSAESVAMIRINGHRAPRLV----VKPFDMRAPAGSSVEIPCKPDGEPLPRISW 356
+A++ + RAP ++ PA ++V+ C G P+P + W
Sbjct: 1 MAEDFVSENSNN-------KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRW 53
Query: 357 SKDEAEFVEDRNHKIHR----TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGE 412
K+ EF ++ ++ SL + ++ P D G Y C N G +L V
Sbjct: 54 LKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVER 113
Query: 413 NSVEP 417
+ P
Sbjct: 114 SRHRP 118
Score = 44.9 bits (106), Expect = 5e-05
Identities = 10/43 (23%), Positives = 12/43 (27%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRP 52
L + V G Y C N G +TV R
Sbjct: 187 LALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGRE 229
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 161 bits (409), Expect = 3e-45
Identities = 59/210 (28%), Positives = 85/210 (40%), Gaps = 19/210 (9%)
Query: 44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE---HDG-- 98
P I+ P + + C VEG P P + WF DG + +++ ++ DG
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGAL 67
Query: 99 -FVLVLNGVRESDAGVYNCVAQNSEGSAES-VAMIRINGHRAPRLVVKPFDMRAPAGSSV 156
F + G +E D G Y CVA+N G A S A ++I V+P D R G +
Sbjct: 68 FFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIA-VLRDDFRVEPKDTRVAKGETA 126
Query: 157 EIPC-KPDGEPLPRISWSKDE--------AEFVEDRNHKIHRTGSLRLYNIGPQDSGLYR 207
+ C P G P P + W KD F +I G+L + N+ P D G Y+
Sbjct: 127 LLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYK 186
Query: 208 CTASNLLGEDVA-EGYLTVTGAPPIFIQRP 236
C A NL+G + L V
Sbjct: 187 CIAQNLVGTRESSYAKLIVQ-VKAAAHHHH 215
Score = 160 bits (405), Expect = 1e-44
Identities = 60/205 (29%), Positives = 86/205 (41%), Gaps = 18/205 (8%)
Query: 222 YLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE-- 279
L P I+ P + + C VEG P P + WF DG + +++ ++
Sbjct: 2 PLAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQ 61
Query: 280 -HDG---FVLVLNGVRESDAGVYNCVAQNSEGSAES-VAMIRINGHRAPRLVVKPFDMRA 334
DG F + G +E D G Y CVA+N G A S A ++I V+P D R
Sbjct: 62 FKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIA-VLRDDFRVEPKDTRV 120
Query: 335 PAGSSVEIPC-KPDGEPLPRISWSKDE--------AEFVEDRNHKIHRTGSLRLYNIGPQ 385
G + + C P G P P + W KD F +I G+L + N+ P
Sbjct: 121 AKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPI 180
Query: 386 DSGLYRCTASNLLGEDVA-EGYLTV 409
D G Y+C A NL+G + L V
Sbjct: 181 DEGNYKCIAQNLVGTRESSYAKLIV 205
Score = 149 bits (377), Expect = 4e-41
Identities = 59/194 (30%), Positives = 83/194 (42%), Gaps = 20/194 (10%)
Query: 136 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT----G 191
+++PR++ P D+ + CK +G+P P I W KD E V K HR G
Sbjct: 7 YQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKD-GEPVSTNEKKSHRVQFKDG 65
Query: 192 SLRLY----NIGPQDSGLYRCTASNLLGEDV-AEGYLTVTGAPPIFIQRPVSTTYSTGST 246
+L Y QD G Y C A N +G+ V L + F P T + G T
Sbjct: 66 ALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGET 125
Query: 247 SRITCL-VEGHPLPQMTWFHDGNSLD--------SDDHVTYEHDGFVLVLNGVRESDAGV 297
+ + C +G P P + W DG LD + V G L+++ V D G
Sbjct: 126 ALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGG-NLLISNVEPIDEGN 184
Query: 298 YNCVAQNSEGSAES 311
Y C+AQN G+ ES
Sbjct: 185 YKCIAQNLVGTRES 198
Score = 102 bits (256), Expect = 8e-25
Identities = 37/130 (28%), Positives = 53/130 (40%), Gaps = 12/130 (9%)
Query: 9 ELVISGVQREHGGRYSCVAGNPAG-VYRGDLHVTVNA-PPIFIQRPVSTTYSTGSTSRIT 66
+ G + + GG Y CVA N G + + F P T + G T+ +
Sbjct: 70 YRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLE 129
Query: 67 CL-VEGHPLPQMTWFHDGNSLD--------SDDHVTYEHDGFVLVLNGVRESDAGVYNCV 117
C +G P P + W DG LD + V G L+++ V D G Y C+
Sbjct: 130 CGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGG-NLLISNVEPIDEGNYKCI 188
Query: 118 AQNSEGSAES 127
AQN G+ ES
Sbjct: 189 AQNLVGTRES 198
Score = 46.4 bits (110), Expect = 1e-05
Identities = 12/56 (21%), Positives = 17/56 (30%), Gaps = 4/56 (7%)
Query: 1 TDDRRSSTE---LVISGVQREHGGRYSCVAGNPAGVYRGDL-HVTVNAPPIFIQRP 52
R + L+IS V+ G Y C+A N G + V
Sbjct: 160 ASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHH 215
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 166 bits (423), Expect = 4e-45
Identities = 63/313 (20%), Positives = 114/313 (36%), Gaps = 39/313 (12%)
Query: 142 VVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHK----------IHRTG 191
+++ + V + C +GEP+P I+W + F K H +
Sbjct: 4 IIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS 63
Query: 192 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITC 251
SL + ++ DSG Y C A++ +G YL + P FI G+ I+C
Sbjct: 64 SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE-YAPKFISNQTIYYSWEGNPINISC 122
Query: 252 LVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF----VLVLNGVRESDAGVYNCVAQNSEG 307
V+ +P + W D L + + + +L + ++D G YNC A N G
Sbjct: 123 DVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIG 182
Query: 308 SAESVAMIRINGH-RAPRLVVKPFDMRAPAGSSVEI---PCKPDGEPLPRISWSKDEAEF 363
+ ++ + +P V + + ++ ++ G +P + + +
Sbjct: 183 TRFQEYILALADVPSSPYGVK----IIELSQTTAKVSFNKPDSHG-GVPIHHYQV-DVKE 236
Query: 364 VEDRNHKIHRTG----SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAP 419
V KI R+ + L N+ P + R A N G+ G+ S
Sbjct: 237 VASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQ----------GDYSKIEIF 286
Query: 420 HTSREPSASKPSV 432
T S PS+
Sbjct: 287 QTLPVREPSPPSI 299
Score = 155 bits (393), Expect = 3e-41
Identities = 63/344 (18%), Positives = 110/344 (31%), Gaps = 40/344 (11%)
Query: 46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD---------HVTYEH 96
P IQ + T + C EG P+P++TW + + V +H
Sbjct: 2 PHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 97 DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSV 156
L + V+ SD+G Y+C A + G + + I AP+ + + G+ +
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI--EYAPKFISNQTIYYSWEGNPI 118
Query: 157 EIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT-----GSLRLYNIGPQDSGLYRCTAS 211
I C P I W +D+ + L + D G Y CTA+
Sbjct: 119 NISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTAT 178
Query: 212 NLLGEDVAEGYLTVTGAP--PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNS 269
N +G E L + P P ++ + T + +P + D
Sbjct: 179 NHIGTRFQEYILALADVPSSPYGVK--IIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKE 236
Query: 270 LDSDDHVTYEHDG--FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVV 327
+ S+ G ++VLN + + A N +G + + P
Sbjct: 237 VASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIF--QTLPVREP 294
Query: 328 KPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI 371
P + S ++S +K +D I
Sbjct: 295 SPPSIHGQPSSGKSF----------KLSITK-----QDDGGAPI 323
Score = 126 bits (317), Expect = 3e-31
Identities = 44/219 (20%), Positives = 84/219 (38%), Gaps = 18/219 (8%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLV 69
L I V+ GRY C A + G ++ +++ + P FI G+ I+C V
Sbjct: 65 LHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDV 124
Query: 70 EGHPLPQMTWFHDGNSLDSDDHVTYEHDGF----VLVLNGVRESDAGVYNCVAQNSEGSA 125
+ +P + W D L + + + +L + ++D G YNC A N G+
Sbjct: 125 KSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTR 184
Query: 126 ESVAMIRINGH-RAPRLVVKPFDMRAPAGSSVEI---PCKPDGEPLPRISWSKDEAEFVE 181
++ + +P V + + ++ ++ G +P + + + V
Sbjct: 185 FQEYILALADVPSSPYGVK----IIELSQTTAKVSFNKPDSHG-GVPIHHYQV-DVKEVA 238
Query: 182 DRNHKIHRTG----SLRLYNIGPQDSGLYRCTASNLLGE 216
KI R+ + L N+ P + R A N G+
Sbjct: 239 SEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQ 277
Score = 49.0 bits (117), Expect = 4e-06
Identities = 28/185 (15%), Positives = 51/185 (27%), Gaps = 20/185 (10%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRP-VSTTYSTGSTSR 64
L I+ GRY+C A N G + + + P + T +
Sbjct: 156 RKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVS 215
Query: 65 ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG--FVLVLNGVRESDAGVYNCVAQNSE 122
+P + D + S+ G ++VLN + + A N +
Sbjct: 216 FNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGK 275
Query: 123 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED 182
G + + P P + S ++S +K +D
Sbjct: 276 GQGDYSKIEIF--QTLPVREPSPPSIHGQPSSGKSF----------KLSITK-----QDD 318
Query: 183 RNHKI 187
I
Sbjct: 319 GGAPI 323
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 166 bits (420), Expect = 4e-45
Identities = 47/392 (11%), Positives = 105/392 (26%), Gaps = 81/392 (20%)
Query: 60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTY-------------------EHDGFV 100
G T +TC Q W + + ++ + F
Sbjct: 9 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 68
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC 160
L++ ++ D+ Y C ++ + + + L D G S+ +
Sbjct: 69 LIIKNLKIEDSDTYICEVEDQKEEVQLLVF---------GLTANS-DTHLLQGQSLTLTL 118
Query: 161 KPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE 220
+ P + R I +L + + QDSG + CT + +
Sbjct: 119 ESPPGSSPSVQCRSP-------RGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFK 171
Query: 221 GYLTVTGAPP----IFIQRPVSTTYS---------TGSTSRITCLVEGHPLPQ----MTW 263
+ V ++ + +S + + E +
Sbjct: 172 IDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDL 231
Query: 264 FHDGNSLDSDDHVTYEHDG------FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
+ S+ G L + + +G + G
Sbjct: 232 KNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEV---- 287
Query: 318 NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSL 377
LVV + C+ G P++ S + N + +
Sbjct: 288 ------NLVV-----MRATQLQKNLTCEVWGPTSPKLMLSL------KLENKEAKVSKRE 330
Query: 378 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
+ + ++G+++C S+ G+ + E + V
Sbjct: 331 KAVWVLNPEAGMWQCLLSD-SGQVLLESNIKV 361
Score = 151 bits (383), Expect = 3e-40
Identities = 45/333 (13%), Positives = 83/333 (24%), Gaps = 64/333 (19%)
Query: 5 RSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSR 64
+ + L+I ++ E Y C + + L + A T G +
Sbjct: 64 QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQ-LLVFGLTANS-------DTHLLQGQSLT 115
Query: 65 ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 124
+T P + L ++ + D+G + C ++
Sbjct: 116 LTLESPPGSSPSVQCRSPRGKNIQGGK--------TLSVSQLELQDSGTWTCTVLQNQKK 167
Query: 125 AESVAMIRINGHR-APRLVVKPFDMRAP-----------AGSSVEIPCKPDGEPLPR--- 169
E I + + A +V K + S E+ + + +
Sbjct: 168 VEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWI 227
Query: 170 -ISWSKDEAEFVEDRNHKIHR-----TGSLRLYNIGPQ--DSGLYRCTASNLLGEDVAEG 221
E + L L PQ SG G+ E
Sbjct: 228 TFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEV 287
Query: 222 YLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQM--TWFHDGNSLDSDDHVTYE 279
L V A T +TC V G P++ + +
Sbjct: 288 NLVVMRA--------------TQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKR---- 329
Query: 280 HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESV 312
V +AG++ C+ +S
Sbjct: 330 -----EKAVWVLNPEAGMWQCLLSDSGQVLLES 357
Score = 141 bits (355), Expect = 1e-36
Identities = 41/304 (13%), Positives = 72/304 (23%), Gaps = 60/304 (19%)
Query: 150 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVED--------------------RNHKIHR 189
G +VE+ C + + W + R+
Sbjct: 6 GKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG 65
Query: 190 TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRI 249
L + N+ +DS Y C + E V +T T G + +
Sbjct: 66 NFPLIIKNLKIEDSDTYICEVEDQKEE-VQLLVFGLTANS--------DTHLLQGQSLTL 116
Query: 250 TCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA 309
T P + L ++ + D+G + C ++
Sbjct: 117 TLESPPGSSPSVQCRSPRGKNIQGGK--------TLSVSQLELQDSGTWTCTVLQNQKKV 168
Query: 310 ESVAMIRINGHR-APRLVVKPFDMRAP-----------AGSSVEIPCKPDGEPLPR---- 353
E I + + A +V K + S E+ + + +
Sbjct: 169 EFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWIT 228
Query: 354 ISWSKDEAEFVEDRNHKIHR-----TGSLRLYNIGPQ--DSGLYRCTASNLLGEDVAEGY 406
E + L L PQ SG G+ E
Sbjct: 229 FDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVN 288
Query: 407 LTVT 410
L V
Sbjct: 289 LVVM 292
Score = 113 bits (283), Expect = 3e-27
Identities = 28/208 (13%), Positives = 58/208 (27%), Gaps = 37/208 (17%)
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTY-------------------EHDGFV 284
G T +TC Q W + + ++ + F
Sbjct: 9 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 68
Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC 344
L++ ++ D+ Y C ++ + + + L D G S+ +
Sbjct: 69 LIIKNLKIEDSDTYICEVEDQKEEVQLLVF---------GLTANS-DTHLLQGQSLTLTL 118
Query: 345 KPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE 404
+ P + R I +L + + QDSG + CT + +
Sbjct: 119 ESPPGSSPSVQCRSP-------RGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFK 171
Query: 405 GYLTVTGENSVEPAPHTSREPSASKPSV 432
+ V + +E + S
Sbjct: 172 IDIVVLA-FQKASSIVYKKEGEQVEFSF 198
Score = 95.2 bits (236), Expect = 5e-21
Identities = 26/246 (10%), Positives = 62/246 (25%), Gaps = 46/246 (18%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYST---- 59
+ L +S ++ + G ++C + + V A
Sbjct: 138 IQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFS 197
Query: 60 ----------GSTSRITCLVEGHPLPQ----MTWFHDGNSLDSDDHVTYEHDG------F 99
+ + E + + S+ G
Sbjct: 198 FPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHL 257
Query: 100 VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIP 159
L + + +G + G LVV +
Sbjct: 258 TLPQALPQYAGSGNLTLALEAKTGKLHQEV----------NLVV-----MRATQLQKNLT 302
Query: 160 CKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA 219
C+ G P++ S + N + + + + ++G+++C S+ G+ +
Sbjct: 303 CEVWGPTSPKLMLSL------KLENKEAKVSKREKAVWVLNPEAGMWQCLLSD-SGQVLL 355
Query: 220 EGYLTV 225
E + V
Sbjct: 356 ESNIKV 361
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 158 bits (402), Expect = 2e-44
Identities = 38/219 (17%), Positives = 65/219 (29%), Gaps = 28/219 (12%)
Query: 40 VTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF 99
V P S G ++ C GHP Q WF + + +
Sbjct: 13 GLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG-------NTS 65
Query: 100 VLVLNGVRESDAGVYNCVAQNSEGSAESV--------------AMIRINGHRAPRLVVKP 145
L+ N V DAG Y C N+ S + ++ V+P
Sbjct: 66 ELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEP 125
Query: 146 FDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGL 205
+ GS++ + C G P+P W K+E + + + + G
Sbjct: 126 TSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK------LYMVPYVDLEHQGT 179
Query: 206 YRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTG 244
Y C N ++ + + P + +T
Sbjct: 180 YWCHVYNDRDSQDSKKVEIIIDELN-NLGHPDNKEQTTD 217
Score = 152 bits (385), Expect = 4e-42
Identities = 45/231 (19%), Positives = 69/231 (29%), Gaps = 31/231 (13%)
Query: 123 GSA-ESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVE 181
GS+ R ++ V P AG V++ C+ G P + W K E
Sbjct: 2 GSSHHHHHHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPN 61
Query: 182 DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV-AEGYLTVTGAP----------- 229
T L + +D+G Y C +N + L V P
Sbjct: 62 GN------TSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVS 115
Query: 230 ---PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLV 286
P S GST + C+ G P+P WF + L + + +
Sbjct: 116 ESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-------TKKLYM 168
Query: 287 LNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAG 337
+ V G Y C N S +S + I + P +
Sbjct: 169 VPYVDLEHQGTYWCHVYNDRDSQDSKKVEII--IDELNNLGHPDNKEQTTD 217
Score = 147 bits (372), Expect = 2e-40
Identities = 35/214 (16%), Positives = 63/214 (29%), Gaps = 32/214 (14%)
Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLN 288
P S G ++ C GHP Q WF + + + L+ N
Sbjct: 18 GSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN-------TSELIFN 70
Query: 289 GVRESDAGVYNCVAQNSEGSAESV--------------AMIRINGHRAPRLVVKPFDMRA 334
V DAG Y C N+ S + ++ V+P +
Sbjct: 71 AVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKL 130
Query: 335 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTA 394
GS++ + C G P+P W K+E + + + + G Y C
Sbjct: 131 MPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK------LYMVPYVDLEHQGTYWCHV 184
Query: 395 SNLLGEDVAEGYLTVTGENSVEPAPHTSREPSAS 428
N ++ + ++ + +
Sbjct: 185 YNDRDSQDSKKVEII-----IDELNNLGHPDNKE 213
Score = 110 bits (277), Expect = 1e-27
Identities = 28/164 (17%), Positives = 50/164 (30%), Gaps = 25/164 (15%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAG----------------VYRGDLHVTVNAPPIFI 49
+++EL+ + V + G Y C N ++ + +
Sbjct: 63 NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQIC 122
Query: 50 QRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRES 109
P S GST + C+ G P+P WF + L + + ++ V
Sbjct: 123 VEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-------TKKLYMVPYVDLE 175
Query: 110 DAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAG 153
G Y C N S +S + I + P +
Sbjct: 176 HQGTYWCHVYNDRDSQDSKKVEII--IDELNNLGHPDNKEQTTD 217
Score = 80.7 bits (199), Expect = 3e-17
Identities = 23/105 (21%), Positives = 35/105 (33%), Gaps = 8/105 (7%)
Query: 307 GSA-ESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVE 365
GS+ R ++ V P AG V++ C+ G P + W K E
Sbjct: 2 GSSHHHHHHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPN 61
Query: 366 DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV-AEGYLTV 409
T L + +D+G Y C +N + L V
Sbjct: 62 G------NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDV 100
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 157 bits (399), Expect = 3e-44
Identities = 38/191 (19%), Positives = 69/191 (36%), Gaps = 12/191 (6%)
Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPL-PRISWSKDEAEFVEDRNHKI------HR 189
R ++ + P G S C+ G+ ISW E + +I
Sbjct: 1 RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 190 TGSLRLYNIGPQDSGLYRCTASNLLGEDV-AEGYLTVTGAPPIFIQRPVSTTYSTGSTSR 248
+ +L +YN D+G+Y+C + G A + + +F P + G +
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF-QKLMFKNAPTPQEFKEGEDAV 119
Query: 249 ITCLVEGHPLPQMTWFHDGNSLD--SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE 306
I C V P + W H G + D + L + G++++D G Y C +
Sbjct: 120 IVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN-YLQIRGIKKTDEGTYRCEGRILA 178
Query: 307 GSAESVAMIRI 317
+ I++
Sbjct: 179 RGEINFKDIQV 189
Score = 156 bits (395), Expect = 1e-43
Identities = 37/190 (19%), Positives = 61/190 (32%), Gaps = 9/190 (4%)
Query: 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPL-PQMTWFH-DGNSLDSDDH----VTYEHDG 98
P S G + C V G ++WF +G L + V + D
Sbjct: 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61
Query: 99 FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEI 158
L + DAG+Y CV +G+ A + + + P G I
Sbjct: 62 STLTIYNANIDDAGIYKCVVTAEDGTQSE-ATVNVKIFQKLMFKNAPTPQEFKEGEDAVI 120
Query: 159 PCKPDGEPLPRISWSKDEAEFVEDRNHK--IHRTGSLRLYNIGPQDSGLYRCTASNLLGE 216
C P I W + + ++ + + L++ I D G YRC L
Sbjct: 121 VCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARG 180
Query: 217 DVAEGYLTVT 226
++ + V
Sbjct: 181 EINFKDIQVI 190
Score = 156 bits (395), Expect = 1e-43
Identities = 37/190 (19%), Positives = 61/190 (32%), Gaps = 9/190 (4%)
Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPL-PQMTWFH-DGNSLDSDDH----VTYEHDG 282
P S G + C V G ++WF +G L + V + D
Sbjct: 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61
Query: 283 FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEI 342
L + DAG+Y CV +G+ A + + + P G I
Sbjct: 62 STLTIYNANIDDAGIYKCVVTAEDGTQSE-ATVNVKIFQKLMFKNAPTPQEFKEGEDAVI 120
Query: 343 PCKPDGEPLPRISWSKDEAEFVEDRNHK--IHRTGSLRLYNIGPQDSGLYRCTASNLLGE 400
C P I W + + ++ + + L++ I D G YRC L
Sbjct: 121 VCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARG 180
Query: 401 DVAEGYLTVT 410
++ + V
Sbjct: 181 EINFKDIQVI 190
Score = 119 bits (300), Expect = 5e-31
Identities = 26/127 (20%), Positives = 45/127 (35%), Gaps = 4/127 (3%)
Query: 10 LVISGVQREHGGRYSCVAGNPAG-VYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCL 68
L I + G Y CV G ++V + +F P + G + I C
Sbjct: 64 LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCD 123
Query: 69 VEGHPLPQMTWFHDGNSLD--SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE 126
V P + W H G + D + L + G++++D G Y C +
Sbjct: 124 VVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN-YLQIRGIKKTDEGTYRCEGRILARGEI 182
Query: 127 SVAMIRI 133
+ I++
Sbjct: 183 NFKDIQV 189
Score = 82.2 bits (203), Expect = 5e-18
Identities = 22/113 (19%), Positives = 39/113 (34%), Gaps = 12/113 (10%)
Query: 321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPL-PRISWSKDEAEFVEDRNHKI------HR 373
R ++ + P G S C+ G+ ISW E + +I
Sbjct: 1 RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 374 TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPS 426
+ +L +YN D+G+Y+C + G E + V + P+
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQS-EATVNVK----IFQKLMFKNAPT 108
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 158 bits (400), Expect = 1e-43
Identities = 40/269 (14%), Positives = 84/269 (31%), Gaps = 22/269 (8%)
Query: 46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFVLVLN 104
+ +P + T + C V P WF +G + + +
Sbjct: 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTP--------SYRIT 53
Query: 105 GVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPD- 163
+D+G Y C S S I++ HR L+++ G + + C
Sbjct: 54 SASVNDSGEYRCQRGLSGRSDP----IQLEIHRGW-LLLQVSSRVFTEGEPLALRCHAWK 108
Query: 164 GEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYL 223
+ + + + ++ F H +L + +G Y C+ A +
Sbjct: 109 DKLVYNVLYYRNGKAF-----KFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISV 163
Query: 224 TVTGAPPI-FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG 282
TV P + V++ G+ ++C + + + + +
Sbjct: 164 TVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLY-FSFYMGSKTLRGRNTS 222
Query: 283 FVLVLNGVRESDAGVYNCVAQNSEGSAES 311
+ R D+G+Y C A +G+
Sbjct: 223 SEYQILTARREDSGLYWCEAATEDGNVLK 251
Score = 153 bits (388), Expect = 6e-42
Identities = 42/279 (15%), Positives = 82/279 (29%), Gaps = 24/279 (8%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKIH-RTGSLRLY 196
+ ++P + +V + C+ P W + T S R+
Sbjct: 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLN--------GTATQTSTPSYRIT 53
Query: 197 NIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGH 256
+ DSG YRC D L + + +Q S ++ G + C
Sbjct: 54 SASVNDSGEYRCQRGLSGRSDPI--QLEIH-RGWLLLQVS-SRVFTEGEPLALRCHAWKD 109
Query: 257 -PLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMI 315
+ + ++ +G + + H L + S G Y+C + +
Sbjct: 110 KLVYNVLYYRNGKAFK------FFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISV 163
Query: 316 RINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG 375
+ ++ G+ V + C+ + +
Sbjct: 164 TVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSS 223
Query: 376 SLRLYNIGPQDSGLYRCTASNLLGEDV---AEGYLTVTG 411
++ +DSGLY C A+ G + E L V G
Sbjct: 224 EYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVLG 262
Score = 132 bits (334), Expect = 1e-34
Identities = 32/228 (14%), Positives = 68/228 (29%), Gaps = 13/228 (5%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTS 63
+ S+ I+ G Y C G + + ++ + +Q S ++ G
Sbjct: 44 QTSTPSYRITSASVNDSGEYRCQRGLSGRSDP--IQLEIHRGWLLLQVS-SRVFTEGEPL 100
Query: 64 RITCLVEGH-PLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE 122
+ C + + ++ +G + + H L + S G Y+C
Sbjct: 101 ALRCHAWKDKLVYNVLYYRNGKAFK------FFHWNSNLTILKTNISHNGTYHCSGMGKH 154
Query: 123 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED 182
+ + + ++ G+ V + C+
Sbjct: 155 RYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSK 214
Query: 183 RNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV---AEGYLTVTG 227
+ + ++ +DSGLY C A+ G + E L V G
Sbjct: 215 TLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVLG 262
Score = 43.0 bits (101), Expect = 2e-04
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 3 DRRSSTELVISGVQREHGGRYSCVAGNPAGVYR---GDLHVTV 42
R +S+E I +RE G Y C A G +L + V
Sbjct: 218 GRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQV 260
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 153 bits (388), Expect = 8e-43
Identities = 41/192 (21%), Positives = 67/192 (34%), Gaps = 14/192 (7%)
Query: 136 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRIS--WSKDEAEFVEDRNHKIHRTGSL 193
PR+V + + V + C + W+K+ E R K
Sbjct: 1 QNEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATR--KNASNMEY 58
Query: 194 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLV 253
R+ +DSG Y C + A + V A P S + G + + C
Sbjct: 59 RINKPRAEDSGEYHCVYHFV-SAPKANATIEV-KAAPDITGHKRSENKNEGQDAMMYCKS 116
Query: 254 EGHPLPQMTWFHDGNSLDSDD-------HVTYEHDGFVL-VLNGVRESDAGVYNCVAQNS 305
G+P P+ W N + + + + + L ++N D G Y C A NS
Sbjct: 117 VGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNS 176
Query: 306 EGSAESVAMIRI 317
GSA ++R+
Sbjct: 177 IGSASVSTVLRV 188
Score = 146 bits (371), Expect = 1e-40
Identities = 39/193 (20%), Positives = 63/193 (32%), Gaps = 17/193 (8%)
Query: 44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMT--WFHDGNSLDSDDHVTYEHDGFVL 101
P + + + C + M W +G L +
Sbjct: 2 NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKN---ASNMEY 58
Query: 102 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK 161
+N R D+G Y+CV + + ++ A I + AP + G + CK
Sbjct: 59 RINKPRAEDSGEYHCVY-HFVSAPKANATIEVKA--APDITGHKRSENKNEGQDAMMYCK 115
Query: 162 PDGEPLPRISWSKDEAEFVEDRNHKIHR--------TGSLRLYNI-GPQDSGLYRCTASN 212
G P P W K E E+ ++ R L + N+ +D G Y C A+N
Sbjct: 116 SVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATN 175
Query: 213 LLGEDVAEGYLTV 225
+G L V
Sbjct: 176 SIGSASVSTVLRV 188
Score = 146 bits (371), Expect = 1e-40
Identities = 39/193 (20%), Positives = 63/193 (32%), Gaps = 17/193 (8%)
Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMT--WFHDGNSLDSDDHVTYEHDGFVL 285
P + + + C + M W +G L +
Sbjct: 2 NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKN---ASNMEY 58
Query: 286 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK 345
+N R D+G Y+CV + + ++ A I + AP + G + CK
Sbjct: 59 RINKPRAEDSGEYHCVY-HFVSAPKANATIEVKA--APDITGHKRSENKNEGQDAMMYCK 115
Query: 346 PDGEPLPRISWSKDEAEFVEDRNHKIHR--------TGSLRLYNI-GPQDSGLYRCTASN 396
G P P W K E E+ ++ R L + N+ +D G Y C A+N
Sbjct: 116 SVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATN 175
Query: 397 LLGEDVAEGYLTV 409
+G L V
Sbjct: 176 SIGSASVSTVLRV 188
Score = 122 bits (307), Expect = 5e-32
Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 9/141 (6%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTG 60
T S+ E I+ + E G Y CV + + + + V A P S + G
Sbjct: 49 TRKNASNMEYRINKPRAEDSGEYHCVY-HFVSAPKANATIEVKAAPDITGHKRSENKNEG 107
Query: 61 STSRITCLVEGHPLPQMTWFHDGNSLDSDD-------HVTYEHDGFVL-VLNGVRESDAG 112
+ + C G+P P+ W N + + + + + L ++N D G
Sbjct: 108 QDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPG 167
Query: 113 VYNCVAQNSEGSAESVAMIRI 133
Y C A NS GSA ++R+
Sbjct: 168 EYECNATNSIGSASVSTVLRV 188
Score = 77.2 bits (190), Expect = 2e-16
Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 5/92 (5%)
Query: 320 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRIS--WSKDEAEFVEDRNHKIHRTGSL 377
PR+V + + V + C + W+K+ E R K
Sbjct: 1 QNEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATR--KNASNMEY 58
Query: 378 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
R+ +DSG Y C + A + V
Sbjct: 59 RINKPRAEDSGEYHCVYHF-VSAPKANATIEV 89
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 157 bits (398), Expect = 1e-42
Identities = 40/197 (20%), Positives = 71/197 (36%), Gaps = 12/197 (6%)
Query: 135 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAE-FVEDRNHKIH----R 189
G AP + ++ S+ + CK G P P + W + E + ++I
Sbjct: 1 GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 190 TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAP----PIFIQRPVSTTYSTGS 245
L + ++ D+ +Y+ A+N G L V P ++ + G
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGE 120
Query: 246 TSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG---FVLVLNGVRESDAGVYNCVA 302
I G P P +TW + +D++ H ++ NGV DAG Y A
Sbjct: 121 VVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 180
Query: 303 QNSEGSAESVAMIRING 319
+N G + + +
Sbjct: 181 KNRFGIDQKTVELDVAD 197
Score = 155 bits (393), Expect = 4e-42
Identities = 48/196 (24%), Positives = 76/196 (38%), Gaps = 11/196 (5%)
Query: 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL--DSDDHVTYEHDGFV-- 100
P F + + S + + C V GHP P + W+ G + D + E G
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGH---RAPRLVVKPFDMRAPAGSSVE 157
L++ V + DA VY A N GS A + + P+ + + A G V
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123
Query: 158 IPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS----LRLYNIGPQDSGLYRCTASNL 213
I G+P P I+W K + + ++++ T S + + +D+G Y A N
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183
Query: 214 LGEDVAEGYLTVTGAP 229
G D L V P
Sbjct: 184 FGIDQKTVELDVADVP 199
Score = 152 bits (385), Expect = 5e-41
Identities = 47/194 (24%), Positives = 75/194 (38%), Gaps = 11/194 (5%)
Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL--DSDDHVTYEHDGFV-- 284
P F + + S + + C V GHP P + W+ G + D + E G
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGH---RAPRLVVKPFDMRAPAGSSVE 341
L++ V + DA VY A N GS A + + P+ + + A G V
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123
Query: 342 IPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS----LRLYNIGPQDSGLYRCTASNL 397
I G+P P I+W K + + ++++ T S + + +D+G Y A N
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183
Query: 398 LGEDVAEGYLTVTG 411
G D L V
Sbjct: 184 FGIDQKTVELDVAD 197
Score = 111 bits (279), Expect = 5e-27
Identities = 30/134 (22%), Positives = 48/134 (35%), Gaps = 8/134 (5%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAP-----PIFIQRPVSTTYSTGSTSR 64
L+I+ V + Y A N G G + V P P ++ + G
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123
Query: 65 ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG---FVLVLNGVRESDAGVYNCVAQNS 121
I G P P +TW + +D++ H ++ NGV DAG Y A+N
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183
Query: 122 EGSAESVAMIRING 135
G + + +
Sbjct: 184 FGIDQKTVELDVAD 197
Score = 84.8 bits (210), Expect = 6e-18
Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 5/106 (4%)
Query: 319 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAE-FVEDRNHKIH----R 373
G AP + ++ S+ + CK G P P + W + E + ++I
Sbjct: 1 GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 374 TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAP 419
L + ++ D+ +Y+ A+N G L V +
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPK 106
Score = 46.3 bits (110), Expect = 2e-05
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP 46
R ++ + +GV+R+ G Y A N G+ + + + V P
Sbjct: 154 IVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVP 199
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 153 bits (388), Expect = 1e-42
Identities = 41/203 (20%), Positives = 77/203 (37%), Gaps = 23/203 (11%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFV-----------EDRNHKI 187
+ D++ P S+++ C G PR+ W + +
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 188 HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG-APPIFIQRPVSTTYSTGST 246
+ + ++ +D+G Y C S G++ E + +T PP V ++ + G+
Sbjct: 62 FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNR 121
Query: 247 SRITCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV----------LVLNGVRESDA 295
+ +TC +G P + +WF DG S+ + D L+ + V D+
Sbjct: 122 AVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDS 181
Query: 296 GVYNCVAQNSEGSAESVAMIRIN 318
G Y C AQN G+A ++
Sbjct: 182 GEYYCQAQNGYGTAMRSEAAHMD 204
Score = 143 bits (361), Expect = 5e-39
Identities = 33/208 (15%), Positives = 53/208 (25%), Gaps = 22/208 (10%)
Query: 46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG----------NSLDSDDHVTYE 95
+ ++TC G P++ W + + +
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 96 HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSS 155
+ + V D G Y C+ G I + P G+
Sbjct: 62 FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNR 121
Query: 156 VEIPCK-PDGEPLPRISWSKDEAE-----------FVEDRNHKIHRTGSLRLYNIGPQDS 203
+ C DG P SW KD F+ ++G L + DS
Sbjct: 122 AVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDS 181
Query: 204 GLYRCTASNLLGEDVAEGYLTVTGAPPI 231
G Y C A N G + +
Sbjct: 182 GEYYCQAQNGYGTAMRSEAAHMDAVELN 209
Score = 140 bits (353), Expect = 6e-38
Identities = 33/203 (16%), Positives = 53/203 (26%), Gaps = 22/203 (10%)
Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG----------NSLDSDDHVTYE 279
+ ++TC G P++ W + + +
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 280 HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSS 339
+ + V D G Y C+ G I + P G+
Sbjct: 62 FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNR 121
Query: 340 VEIPCK-PDGEPLPRISWSKDEAE-----------FVEDRNHKIHRTGSLRLYNIGPQDS 387
+ C DG P SW KD F+ ++G L + DS
Sbjct: 122 AVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDS 181
Query: 388 GLYRCTASNLLGEDVAEGYLTVT 410
G Y C A N G + +
Sbjct: 182 GEYYCQAQNGYGTAMRSEAAHMD 204
Score = 117 bits (294), Expect = 5e-30
Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 13/142 (9%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAG--VYRGDLHVTVNAPPIFIQRPVSTTYSTGSTS 63
SS+ + S V R+ G Y+C+ G +H+TV PP V ++ + G+ +
Sbjct: 63 SSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRA 122
Query: 64 RITCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV----------LVLNGVRESDAG 112
+TC +G P + +WF DG S+ + D L+ + V D+G
Sbjct: 123 VLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSG 182
Query: 113 VYNCVAQNSEGSAESVAMIRIN 134
Y C AQN G+A ++
Sbjct: 183 EYYCQAQNGYGTAMRSEAAHMD 204
Score = 46.5 bits (110), Expect = 1e-05
Identities = 10/44 (22%), Positives = 16/44 (36%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFI 49
S +L+ V G Y C A N G ++A + +
Sbjct: 167 KSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVELNV 210
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 149 bits (378), Expect = 1e-41
Identities = 46/188 (24%), Positives = 72/188 (38%), Gaps = 13/188 (6%)
Query: 44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD----HVTYEHDGF 99
A + PV T S G ++ C VEG P + W DG + + D V+ +H
Sbjct: 1 AGLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG 60
Query: 100 VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIP 159
L L V SDAG Y C ++ + S + + P V+P D+ P + ++
Sbjct: 61 FLSLKSVERSDAGRYWCQVEDGGETEIS-QPVWLTVEGVPFFTVEPKDLAVPPNAPFQLS 119
Query: 160 CKPDGEPLP-RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV 218
C+ G P P I W + + L G S ++ C A NL G
Sbjct: 120 CEAVGPPEPVTIVWWRGTTKIGGPAP------SPSVLNVTGVTQSTMFSCEAHNLKGLAS 173
Query: 219 AE-GYLTV 225
+ + +
Sbjct: 174 SRTATVHL 181
Score = 149 bits (378), Expect = 1e-41
Identities = 46/188 (24%), Positives = 72/188 (38%), Gaps = 13/188 (6%)
Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD----HVTYEHDGF 283
A + PV T S G ++ C VEG P + W DG + + D V+ +H
Sbjct: 1 AGLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG 60
Query: 284 VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIP 343
L L V SDAG Y C ++ + S + + P V+P D+ P + ++
Sbjct: 61 FLSLKSVERSDAGRYWCQVEDGGETEIS-QPVWLTVEGVPFFTVEPKDLAVPPNAPFQLS 119
Query: 344 CKPDGEPLP-RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV 402
C+ G P P I W + + L G S ++ C A NL G
Sbjct: 120 CEAVGPPEPVTIVWWRGTTKIGGPAP------SPSVLNVTGVTQSTMFSCEAHNLKGLAS 173
Query: 403 AE-GYLTV 409
+ + +
Sbjct: 174 SRTATVHL 181
Score = 112 bits (283), Expect = 7e-29
Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 9/122 (7%)
Query: 10 LVISGVQREHGGRYSCVAGNPAG-VYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCL 68
L + V+R GRY C + + +TV P F P + +++C
Sbjct: 62 LSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCE 121
Query: 69 VEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES 127
G P P + W+ + VLN + + +++C A N +G A S
Sbjct: 122 AVGPPEPVTIVWWRGTTKIGGPAPSP-------SVLNVTGVTQSTMFSCEAHNLKGLASS 174
Query: 128 VA 129
Sbjct: 175 RT 176
Score = 32.8 bits (75), Expect = 0.24
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 3 DRRSSTELVISGVQREHGGRYSCVAGNPAGV 33
+ + V++ +SC A N G+
Sbjct: 141 GGPAPSPSVLNVTGVTQSTMFSCEAHNLKGL 171
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 153 bits (388), Expect = 3e-41
Identities = 51/322 (15%), Positives = 89/322 (27%), Gaps = 42/322 (13%)
Query: 44 APPIFIQRPVSTTYSTGSTSRITCLVEGHP----LPQMTWFHDGNSLDSD---------- 89
P +Q S G+ + C + Q+TW N +
Sbjct: 13 DPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGV 72
Query: 90 -------DHVTYEHDGF---VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAP 139
+ V + F + L+ + D GVY C + + + P
Sbjct: 73 SVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRE-SQLNLTVMAKP 131
Query: 140 RLVVKPFDMRAPA-----GSSVEIPCK-PDGEPLPRISWSKD-----EAEFVEDRNHKIH 188
++ A + C +G+P +SW E + + + N +
Sbjct: 132 TNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVT 191
Query: 189 RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSR 248
RL C + + L V P + I+ Y +
Sbjct: 192 VISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVK 251
Query: 249 ITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG 307
+TC + +P + W SL + + + S AG Y C A N G
Sbjct: 252 LTCKADANPPATEYHWTTLNGSLPKGVEAQ---NRTLFFKGPINYSLAGTYICEATNPIG 308
Query: 308 SAESVAMIRINGHRAPRLVVKP 329
+ + I A L
Sbjct: 309 TRSGQVEVNI--TEAAALEHHH 328
Score = 151 bits (382), Expect = 2e-40
Identities = 49/324 (15%), Positives = 96/324 (29%), Gaps = 41/324 (12%)
Query: 135 GHRAPRLVVKPFDMRAPAGSSVEIPCK----PDGEPLPRISWSKDEA------------- 177
G ++V M G+ V + C + +++W K
Sbjct: 11 GRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSM 70
Query: 178 --EFVEDRNHKIH------RTGSLRLYNIGPQDSGLYRCTASNL-LGEDVAEGYLTVTGA 228
+ ++ G++RL + +D G+Y C + G ++ LTV
Sbjct: 71 GVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAK 130
Query: 229 PPIFIQRP----VSTTYSTGSTSRITCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDGF 283
P +I+ + TC G P ++W + +
Sbjct: 131 PTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTV 190
Query: 284 ----VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFD-MRAPAGS 338
L RE+ C+ + + + P + ++ FD
Sbjct: 191 TVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQY--EPEVTIEGFDGNWYLQRM 248
Query: 339 SVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNL 397
V++ CK D P W+ + + I +G Y C A+N
Sbjct: 249 DVKLTCKADANPPATEYHWTTLNGSLPKG--VEAQNRTLFFKGPINYSLAGTYICEATNP 306
Query: 398 LGEDVAEGYLTVTGENSVEPAPHT 421
+G + + +T ++E H
Sbjct: 307 IGTRSGQVEVNITEAAALEHHHHH 330
Score = 144 bits (364), Expect = 4e-38
Identities = 40/244 (16%), Positives = 71/244 (29%), Gaps = 17/244 (6%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSC-VAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYST 59
+ + +S ++ E G Y C A P G L++TV A P
Sbjct: 85 LRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRA 144
Query: 60 GSTSR-----ITCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDGF----VLVLNGVRES 109
TC G P ++W + + L RE+
Sbjct: 145 KKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREA 204
Query: 110 DAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFD-MRAPAGSSVEIPCKPDGEPLP 168
C+ + + + P + ++ FD V++ CK D P
Sbjct: 205 HQQSLACIVNYHMDRFKESLTLNVQY--EPEVTIEGFDGNWYLQRMDVKLTCKADANPPA 262
Query: 169 -RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 227
W+ + + I +G Y C A+N +G + + +T
Sbjct: 263 TEYHWTTLNGSLPKG--VEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITE 320
Query: 228 APPI 231
A +
Sbjct: 321 AAAL 324
Score = 100 bits (251), Expect = 3e-23
Identities = 24/142 (16%), Positives = 43/142 (30%), Gaps = 7/142 (4%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIF-IQRPVSTTYSTGSTSR 64
+ + + H +C+ ++ L + V P I+ Y +
Sbjct: 192 VISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVK 251
Query: 65 ITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG 123
+TC + +P + W SL + + + S AG Y C A N G
Sbjct: 252 LTCKADANPPATEYHWTTLNGSLPKGVEAQ---NRTLFFKGPINYSLAGTYICEATNPIG 308
Query: 124 SAESVAMIRINGHRAPRLVVKP 145
+ + I A L
Sbjct: 309 TRSGQVEVNI--TEAAALEHHH 328
Score = 88.3 bits (218), Expect = 6e-19
Identities = 31/221 (14%), Positives = 58/221 (26%), Gaps = 36/221 (16%)
Query: 225 VTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHP----LPQMTWFHDGNSLDSD------- 273
+ P +Q S G+ + C + Q+TW N +
Sbjct: 10 MGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPS 69
Query: 274 ----------DHVTYEHDGF---VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGH 320
+ V + F + L+ + D GVY C + + +
Sbjct: 70 MGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRE-SQLNLTVM 128
Query: 321 RAPRLVVKPFDMRAPA-----GSSVEIPCK-PDGEPLPRISWSKD-----EAEFVEDRNH 369
P ++ A + C +G+P +SW E + + + N
Sbjct: 129 AKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNG 188
Query: 370 KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
+ RL C + + L V
Sbjct: 189 TVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQ 229
Score = 47.1 bits (111), Expect = 1e-05
Identities = 10/48 (20%), Positives = 15/48 (31%)
Query: 5 RSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRP 52
++ T + G Y C A NP G G + V +
Sbjct: 281 QNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEAAALEHHH 328
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 151 bits (383), Expect = 5e-41
Identities = 40/283 (14%), Positives = 77/283 (27%), Gaps = 26/283 (9%)
Query: 56 TYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD-GFVLVLNGVRESDAGVY 114
+ ST +TC + W + + VL L + D G Y
Sbjct: 11 VLNVSSTFVLTCSGSA----PVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEY 66
Query: 115 NCVAQNSEGSAES-VAMIRINGHRAPRLVVK----PFDMRAPAGSSVEIPCKPDGEPLPR 169
C +S G + I + + + + IPC+ P
Sbjct: 67 FCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD-PQLV 125
Query: 170 ISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT--VTG 227
++ + + + + + G + Y C + E ++ Y +
Sbjct: 126 VTLHE------KKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQV 179
Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGN-------SLDSDDHVTYEH 280
+ V T G + C+V G+ + W + + H
Sbjct: 180 SSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYH 239
Query: 281 DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAP 323
+L + D+G Y C S + I I +
Sbjct: 240 IRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESG 282
Score = 147 bits (373), Expect = 1e-39
Identities = 47/289 (16%), Positives = 89/289 (30%), Gaps = 31/289 (10%)
Query: 141 LVVKPF--DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED--RNHKIHRTGSLRLY 196
LVV P ++ S+ + C + W + E ++ + + L L
Sbjct: 1 LVVTPPGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQEMAKAQDGTFSSVLTLT 56
Query: 197 NIGPQDSGLYRCTASNLLGEDVAEG---YLTVTGAPPIFIQRPVSTTYST---GSTSRIT 250
N+ D+G Y CT ++ G + E Y+ V F+ + + I
Sbjct: 57 NLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIP 116
Query: 251 CLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE 310
C V P +T + GF + + Y C + +
Sbjct: 117 CRVTD-PQLVVTLHEKKGDVALP-VPYDHQRGFSGI------FEDRSYICKTTIGDREVD 168
Query: 311 SVAM-IRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--------EA 361
S A + + + V G ++ + C G + W+ E
Sbjct: 169 SDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEP 228
Query: 362 EFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
+ H L + + +DSG Y C + + + E + +T
Sbjct: 229 VTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINIT 277
Score = 130 bits (329), Expect = 8e-34
Identities = 38/250 (15%), Positives = 73/250 (29%), Gaps = 25/250 (10%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGD---LHVTVNAPPI-FIQRPVSTT 56
D SS L ++ + G Y C + G+ + L++ V P + F+
Sbjct: 45 QDGTFSSV-LTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEEL 103
Query: 57 YST---GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGV 113
+ + I C V P +T + GF + +
Sbjct: 104 FIFLTEITEITIPCRVTD-PQLVVTLHEKKGDVALP-VPYDHQRGFSGI------FEDRS 155
Query: 114 YNCVAQNSEGSAESVAM-IRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW 172
Y C + +S A + + + V G ++ + C G + W
Sbjct: 156 YICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEW 215
Query: 173 SKD--------EAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLT 224
+ E + H L + + +DSG Y C + + + E +
Sbjct: 216 TYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAIN 275
Query: 225 VTGAPPIFIQ 234
+T
Sbjct: 276 ITVVESGHHH 285
Score = 93.2 bits (231), Expect = 7e-21
Identities = 25/193 (12%), Positives = 52/193 (26%), Gaps = 20/193 (10%)
Query: 240 TYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD-GFVLVLNGVRESDAGVY 298
+ ST +TC + W + + VL L + D G Y
Sbjct: 11 VLNVSSTFVLTCSGSA----PVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEY 66
Query: 299 NCVAQNSEGSAES-VAMIRINGHRAPRLVVK----PFDMRAPAGSSVEIPCKPDGEPLPR 353
C +S G + I + + + + IPC+ P
Sbjct: 67 FCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD-PQLV 125
Query: 354 ISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGEN 413
++ + + + + + G + Y C + E ++ Y +
Sbjct: 126 VTLHE------KKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQV 179
Query: 414 SVEPAPHTSREPS 426
+ + S
Sbjct: 180 ---SSINVSVNAV 189
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 152 bits (385), Expect = 9e-41
Identities = 57/325 (17%), Positives = 93/325 (28%), Gaps = 52/325 (16%)
Query: 145 PFDMRAPA-GSSVEIPCKPDGEPLPRISWSKD-------EAEFVEDRNHKIH-RTGSLRL 195
P ++ P ++ + W E ++I L
Sbjct: 24 PARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWF 83
Query: 196 YNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIF---IQRPVSTTYSTGSTSRITC- 251
D+G Y C N L V F ++ PV Y RITC
Sbjct: 84 RPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCP 143
Query: 252 ----LVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG 307
P +TW+ + + ++V +G L S+ G Y CV E
Sbjct: 144 NVDGYFPSSVKPTITWYMGCYKIQNFNNVI--PEGMNLSFLIALISNNGNYTCVVTYPEN 201
Query: 308 SAE-------SVAMIRINGHRAPRLVVKPFD---MRAPAGSSVEIPCK----PDGEPLPR 353
+V ++ + P ++ P D G + IPC +
Sbjct: 202 GRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNE 261
Query: 354 ISWSKD---------EAEFVEDRNHKIHR----TGSLRLYNIGPQD-SGLYRCTASNLLG 399
+ W+ D + E +H T L + + +D Y C A + G
Sbjct: 262 VWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKG 321
Query: 400 EDVAEGYLTVTGENSVEPAPHTSRE 424
E + PAP + E
Sbjct: 322 EVAKAAKVKQ-----KVPAPRYTVE 341
Score = 144 bits (363), Expect = 9e-38
Identities = 43/300 (14%), Positives = 83/300 (27%), Gaps = 43/300 (14%)
Query: 60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE-------HDGFVLVLNGVRESDAG 112
+ + W+ D ++ + + + VL +D G
Sbjct: 33 EHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTG 92
Query: 113 VYNCVAQNSEGSAESVAMIRI--NGHRAPRLVVKPFDMRAPAGSSVEIPC-----KPDGE 165
Y C+ +N+ ++ + + + P I C
Sbjct: 93 NYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSS 152
Query: 166 PLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLL----GEDVAEG 221
P I+W +++ N+ I +L ++G Y C +
Sbjct: 153 VKPTITWYMG-CYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTL 211
Query: 222 YLTVTGAP----PIFIQRPVSTTY---STGSTSRITCLV----EGHPLPQMTWFHDGNSL 270
+ V G+P P I P G I C V ++ W DG
Sbjct: 212 TVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKP 271
Query: 271 DSDDHVTYEHDGF------------VLVLNGVRESDAGV-YNCVAQNSEGSAESVAMIRI 317
D ++ +L + V D Y C A++++G A ++
Sbjct: 272 DDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQ 331
Score = 143 bits (361), Expect = 1e-37
Identities = 46/261 (17%), Positives = 79/261 (30%), Gaps = 39/261 (14%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV----NAPPIFIQRPVSTTYSTGSTSRI 65
L G Y+C+ N + + V + ++ PV Y RI
Sbjct: 81 LWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRI 140
Query: 66 TC-----LVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN 120
TC P +TW+ + + ++V +G L S+ G Y CV
Sbjct: 141 TCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVI--PEGMNLSFLIALISNNGNYTCVVTY 198
Query: 121 SEGSAE-------SVAMIRINGHRAPRLVVKPFD---MRAPAGSSVEIPCK----PDGEP 166
E +V ++ + P ++ P D G + IPC +
Sbjct: 199 PENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDS 258
Query: 167 LPRISWSKD---------EAEFVEDRNHKIHR----TGSLRLYNIGPQD-SGLYRCTASN 212
+ W+ D + E +H T L + + +D Y C A +
Sbjct: 259 RNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARS 318
Query: 213 LLGEDVAEGYLTVTGAPPIFI 233
GE + P +
Sbjct: 319 AKGEVAKAAKVKQKVPAPRYT 339
Score = 78.8 bits (193), Expect = 9e-16
Identities = 28/159 (17%), Positives = 42/159 (26%), Gaps = 29/159 (18%)
Query: 4 RRSSTELVISGVQREHGGRYSCVA----GNPAGVYRGDLHVTVN-----APPIFIQRPVS 54
L + G Y+CV L V V A P I P
Sbjct: 173 IPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPND 232
Query: 55 TTY---STGSTSRITCLV----EGHPLPQMTWFHDGNSLDSDDHVTYEHDGF-------- 99
G I C V ++ W DG D ++
Sbjct: 233 HVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDE 292
Query: 100 ----VLVLNGVRESDAGV-YNCVAQNSEGSAESVAMIRI 133
+L + V D Y C A++++G A ++
Sbjct: 293 TRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQ 331
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 147 bits (373), Expect = 2e-40
Identities = 36/197 (18%), Positives = 68/197 (34%), Gaps = 26/197 (13%)
Query: 55 TTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEHDG--FVLVLNGVRESDA 111
ST ++ V ++ W H+G+++ D V G L +N +D
Sbjct: 12 KIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDK 71
Query: 112 GVYNCVAQNSEGSAESVAMIRI-------------------NGHRAPRLVVKPFDMRAPA 152
G Y + + + + +RA L P +
Sbjct: 72 GKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQE 131
Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI----HRTGSLRLYNIGPQDSGLYRC 208
G ++ + C G+P P +SW K+E + + + RT + + DSG Y
Sbjct: 132 GKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGL 191
Query: 209 TASNLLGEDVAEGYLTV 225
N G + ++ ++V
Sbjct: 192 VVKNKYGSETSDFTVSV 208
Score = 147 bits (373), Expect = 2e-40
Identities = 36/197 (18%), Positives = 68/197 (34%), Gaps = 26/197 (13%)
Query: 239 TTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEHDG--FVLVLNGVRESDA 295
ST ++ V ++ W H+G+++ D V G L +N +D
Sbjct: 12 KIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDK 71
Query: 296 GVYNCVAQNSEGSAESVAMIRI-------------------NGHRAPRLVVKPFDMRAPA 336
G Y + + + + +RA L P +
Sbjct: 72 GKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQE 131
Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI----HRTGSLRLYNIGPQDSGLYRC 392
G ++ + C G+P P +SW K+E + + + RT + + DSG Y
Sbjct: 132 GKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGL 191
Query: 393 TASNLLGEDVAEGYLTV 409
N G + ++ ++V
Sbjct: 192 VVKNKYGSETSDFTVSV 208
Score = 139 bits (351), Expect = 1e-37
Identities = 35/193 (18%), Positives = 62/193 (32%), Gaps = 27/193 (13%)
Query: 152 AGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYR 207
+++ +++WS + + K TG L++ P D G Y
Sbjct: 16 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYV 75
Query: 208 CTASNLLGEDVAEGYLTV--------------------TGAPPIFIQRPVSTTYSTGSTS 247
+ L+ + P T G
Sbjct: 76 MELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKAL 135
Query: 248 RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG---FVLVLNGVRESDAGVYNCVAQN 304
+TC V G P P+++W + +L DH + + +NGV +D+G Y V +N
Sbjct: 136 NLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKN 195
Query: 305 SEGSAESVAMIRI 317
GS S + +
Sbjct: 196 KYGSETSDFTVSV 208
Score = 110 bits (277), Expect = 1e-27
Identities = 29/148 (19%), Positives = 52/148 (35%), Gaps = 24/148 (16%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV---------------------NAPPIF 48
L I+ G+Y + ++ + ++ N +
Sbjct: 61 LQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVL 120
Query: 49 IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG---FVLVLNG 105
P T G +TC V G P P+++W + +L DH + + +NG
Sbjct: 121 GGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTING 180
Query: 106 VRESDAGVYNCVAQNSEGSAESVAMIRI 133
V +D+G Y V +N GS S + +
Sbjct: 181 VSTADSGKYGLVVKNKYGSETSDFTVSV 208
Score = 68.4 bits (167), Expect = 4e-13
Identities = 12/102 (11%), Positives = 31/102 (30%), Gaps = 4/102 (3%)
Query: 336 AGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYR 391
+++ +++WS + + K TG L++ P D G Y
Sbjct: 16 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYV 75
Query: 392 CTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVA 433
+ L+ + ++ + ++ + A
Sbjct: 76 MELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRA 117
Score = 47.2 bits (112), Expect = 6e-06
Identities = 12/45 (26%), Positives = 17/45 (37%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAP 45
+ + I+GV G+Y V N G D V+V P
Sbjct: 167 KFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 211
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 146 bits (371), Expect = 2e-40
Identities = 37/199 (18%), Positives = 65/199 (32%), Gaps = 16/199 (8%)
Query: 135 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPR--ISWSKDEAEFV---EDRNHKIHR 189
G+ P + ++R G + + C P W +E + R
Sbjct: 5 GYLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQT 64
Query: 190 TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV---------TGAPPIFIQRPVSTT 240
G+L + N+ D G Y C S+ P + +
Sbjct: 65 NGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVY 124
Query: 241 YSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNC 300
G + C G+P+P + W + S ++ G VL + ++ D G+Y C
Sbjct: 125 ALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEIS--TSGAVLKIFNIQLEDEGIYEC 182
Query: 301 VAQNSEGSAESVAMIRING 319
A+N G + A I +
Sbjct: 183 EAENIRGKDKHQARIYVQA 201
Score = 145 bits (368), Expect = 6e-40
Identities = 39/195 (20%), Positives = 65/195 (33%), Gaps = 13/195 (6%)
Query: 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMT--WFHDGNSLD--SDDHVTYEHDGFV 100
P + G + C H ++ W + + D
Sbjct: 8 DPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGN 67
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMI--------RINGHRAPRLVVKPFDMRAPA 152
L + V SD G Y+C + + + R +VV+ D+ A
Sbjct: 68 LYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALM 127
Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 212
G +V + C G P+P I W K L+++NI +D G+Y C A N
Sbjct: 128 GQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSG-AVLKIFNIQLEDEGIYECEAEN 186
Query: 213 LLGEDVAEGYLTVTG 227
+ G+D + + V
Sbjct: 187 IRGKDKHQARIYVQA 201
Score = 145 bits (368), Expect = 6e-40
Identities = 39/195 (20%), Positives = 65/195 (33%), Gaps = 13/195 (6%)
Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMT--WFHDGNSLD--SDDHVTYEHDGFV 284
P + G + C H ++ W + + D
Sbjct: 8 DPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGN 67
Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAESVAMI--------RINGHRAPRLVVKPFDMRAPA 336
L + V SD G Y+C + + + R +VV+ D+ A
Sbjct: 68 LYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALM 127
Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 396
G +V + C G P+P I W K L+++NI +D G+Y C A N
Sbjct: 128 GQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSG-AVLKIFNIQLEDEGIYECEAEN 186
Query: 397 LLGEDVAEGYLTVTG 411
+ G+D + + V
Sbjct: 187 IRGKDKHQARIYVQA 201
Score = 118 bits (296), Expect = 2e-30
Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 16/149 (10%)
Query: 1 TDDRRSSTE----LVISGVQREHGGRYSCVAGNPAG----------VYRGDLHVTVNAPP 46
D RR ++ L I+ V+ G YSC +P+ + T P
Sbjct: 55 MDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPA 114
Query: 47 IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGV 106
+ + G + C G+P+P + W + S ++ G VL + +
Sbjct: 115 DIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEIS--TSGAVLKIFNI 172
Query: 107 RESDAGVYNCVAQNSEGSAESVAMIRING 135
+ D G+Y C A+N G + A I +
Sbjct: 173 QLEDEGIYECEAENIRGKDKHQARIYVQA 201
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 147 bits (371), Expect = 2e-40
Identities = 33/205 (16%), Positives = 56/205 (27%), Gaps = 21/205 (10%)
Query: 44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG----------NSLDSDDHVT 93
+ +++C G P++ W D N + +
Sbjct: 3 GSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDR 62
Query: 94 YEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAG 153
+ V D G Y C+ G++ +++ P A G
Sbjct: 63 VTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIG 122
Query: 154 SSVEIPCK-PDGEPLPRISWSKD----------EAEFVEDRNHKIHRTGSLRLYNIGPQD 202
+ + C DG P +W KD F TG L + D
Sbjct: 123 NRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASD 182
Query: 203 SGLYRCTASNLLGEDVAEGYLTVTG 227
+G Y C A N G + + +
Sbjct: 183 TGEYSCEARNGYGTPMTSNAVRMEA 207
Score = 147 bits (371), Expect = 2e-40
Identities = 33/205 (16%), Positives = 56/205 (27%), Gaps = 21/205 (10%)
Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDG----------NSLDSDDHVT 277
+ +++C G P++ W D N + +
Sbjct: 3 GSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDR 62
Query: 278 YEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAG 337
+ V D G Y C+ G++ +++ P A G
Sbjct: 63 VTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIG 122
Query: 338 SSVEIPCK-PDGEPLPRISWSKD----------EAEFVEDRNHKIHRTGSLRLYNIGPQD 386
+ + C DG P +W KD F TG L + D
Sbjct: 123 NRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASD 182
Query: 387 SGLYRCTASNLLGEDVAEGYLTVTG 411
+G Y C A N G + + +
Sbjct: 183 TGEYSCEARNGYGTPMTSNAVRMEA 207
Score = 117 bits (295), Expect = 4e-30
Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 12/142 (8%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAG--VYRGDLHVTVNAPPIFIQRPVSTTYSTGSTS 63
T + V RE G Y+C+ G + + V PP + ++ + G+ +
Sbjct: 66 LPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRA 125
Query: 64 RITCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDGF---------VLVLNGVRESDAGV 113
+TC +G P + TWF DG + ++ T LV + + SD G
Sbjct: 126 VLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGE 185
Query: 114 YNCVAQNSEGSAESVAMIRING 135
Y+C A+N G+ + +R+
Sbjct: 186 YSCEARNGYGTPMTSNAVRMEA 207
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 138 bits (350), Expect = 1e-37
Identities = 38/206 (18%), Positives = 73/206 (35%), Gaps = 30/206 (14%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGE-PLPRISWSKD------------EAEFVEDRNH 185
V P ++ G + + C+ + P + W +D + ED
Sbjct: 3 SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62
Query: 186 KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE-GYLTVTGAPPIFIQRPVSTTYSTG 244
LR+ ++ D+G Y+C V++ GY+ + G P F++ P T +
Sbjct: 63 DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEG-LPYFLEEPEDRTVAAN 121
Query: 245 STSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 303
+ ++C +G P P + W D L + + L+ + ++C A
Sbjct: 122 TPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQR-----SLHVPGLNKTSSFSCEAH 176
Query: 304 NSEGSAESVAMIRINGHRAPRLVVKP 329
N++G S + V P
Sbjct: 177 NAKGVTTSRTA---------TITVLP 193
Score = 138 bits (350), Expect = 1e-37
Identities = 39/200 (19%), Positives = 66/200 (33%), Gaps = 21/200 (10%)
Query: 45 PPIFIQRPVSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYE-------- 95
F+ P + T + G T + C ++ P++ W DG L+ D +
Sbjct: 2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQ 61
Query: 96 ---HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPA 152
L + ++ SD G Y C+ + S + P + +P D A
Sbjct: 62 DDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVS-QPGYVGLEGLPYFLEEPEDRTVAA 120
Query: 153 GSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTAS 211
+ + C+ G P P + W +D H L+ G + + C A
Sbjct: 121 NTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH----GPQRSLHVPGLNKTSSFSCEAH 176
Query: 212 NLLGEDV-AEGYLTVTGAPP 230
N G +TV P
Sbjct: 177 NAKGVTTSRTATITV--LPQ 194
Score = 137 bits (347), Expect = 3e-37
Identities = 38/195 (19%), Positives = 65/195 (33%), Gaps = 19/195 (9%)
Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYE-------- 279
F+ P + T + G T + C ++ P++ W DG L+ D +
Sbjct: 2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQ 61
Query: 280 ---HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPA 336
L + ++ SD G Y C+ + S + P + +P D A
Sbjct: 62 DDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVS-QPGYVGLEGLPYFLEEPEDRTVAA 120
Query: 337 GSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTAS 395
+ + C+ G P P + W +D H L+ G + + C A
Sbjct: 121 NTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH----GPQRSLHVPGLNKTSSFSCEAH 176
Query: 396 NLLGEDV-AEGYLTV 409
N G +TV
Sbjct: 177 NAKGVTTSRTATITV 191
Score = 113 bits (285), Expect = 6e-29
Identities = 26/142 (18%), Positives = 51/142 (35%), Gaps = 16/142 (11%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAG-VYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSR 64
++L I+ +Q G+Y C+ +V + P F++ P T + +
Sbjct: 66 VVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFN 125
Query: 65 ITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG 123
++C +G P P + W D L + + L+ + ++C A N++G
Sbjct: 126 LSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQR-----SLHVPGLNKTSSFSCEAHNAKG 180
Query: 124 SAESVAMIRINGHRAPRLVVKP 145
S + V P
Sbjct: 181 VTTSRTA---------TITVLP 193
Score = 70.3 bits (172), Expect = 6e-14
Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 20/118 (16%)
Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGE-PLPRISWSKD------------EAEFVEDRNH 369
V P ++ G + + C+ + P + W +D + ED
Sbjct: 3 SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62
Query: 370 KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE-GYLTVTGENSVEPAPHTSREPS 426
LR+ ++ D+G Y+C V++ GY+ + G P+ EP
Sbjct: 63 DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEG------LPYFLEEPE 114
Score = 34.9 bits (80), Expect = 0.061
Identities = 8/47 (17%), Positives = 12/47 (25%), Gaps = 2/47 (4%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAG-VYRGDLHVTVNAPP 46
+ + +SC A N G +TV P
Sbjct: 149 ATAPGHGPQRSLHVPGLNKTSSFSCEAHNAKGVTTSRTATITV-LPQ 194
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 134 bits (339), Expect = 5e-36
Identities = 30/208 (14%), Positives = 62/208 (29%), Gaps = 24/208 (11%)
Query: 227 GAPPIFIQRPVSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEHDG--- 282
G P F + ++ R E ++ + + + D
Sbjct: 1 GIDP-FTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTG 59
Query: 283 -FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRL---------------- 325
+ + +++ D G Y Q+ + + S ++ + + +
Sbjct: 60 IIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPH 119
Query: 326 VVKPFDMRAPAGSSVEIPCKPDGE-PLPRISWSKDEAEFVEDRNHKIHR-TGSLRLYNIG 383
V+ +V + CK I W KDE E D H +L +
Sbjct: 120 FVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFS 179
Query: 384 PQDSGLYRCTASNLLGEDVAEGYLTVTG 411
+D+G+Y + G+D + L
Sbjct: 180 KKDAGIYEVILKDDRGKDKSRLKLVDEA 207
Score = 132 bits (334), Expect = 2e-35
Identities = 28/203 (13%), Positives = 60/203 (29%), Gaps = 23/203 (11%)
Query: 48 FIQRPVSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEHDG----FVLV 102
F + ++ R E ++ + + + D +
Sbjct: 5 FTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMF 64
Query: 103 LNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRL----------------VVKPF 146
+ +++ D G Y Q+ + + S ++ + + + V+
Sbjct: 65 MEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL 124
Query: 147 DMRAPAGSSVEIPCKPDGE-PLPRISWSKDEAEFVEDRNHKIHR-TGSLRLYNIGPQDSG 204
+V + CK I W KDE E D H +L + +D+G
Sbjct: 125 SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAG 184
Query: 205 LYRCTASNLLGEDVAEGYLTVTG 227
+Y + G+D + L
Sbjct: 185 IYEVILKDDRGKDKSRLKLVDEA 207
Score = 126 bits (318), Expect = 3e-33
Identities = 27/197 (13%), Positives = 62/197 (31%), Gaps = 26/197 (13%)
Query: 142 VVKPFDMRAPAGSSVEIP-CKPDGEPLPRISWSKDEAEFVEDRNHKIH---RTGSLRLY- 196
+ V ++++ +E E E +K+H TG + ++
Sbjct: 6 TKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFM 65
Query: 197 -NIGPQDSGLYRCTASNLLGEDVAEGYLTVT------------------GAPPIFIQRPV 237
+ +D G Y + + + L P F++ +
Sbjct: 66 EKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE-YL 124
Query: 238 STTYSTGSTSRITCLVEGH-PLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAG 296
S + + C V + W+ D + D+ ++ L++ + DAG
Sbjct: 125 SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAG 184
Query: 297 VYNCVAQNSEGSAESVA 313
+Y + ++ G +S
Sbjct: 185 IYEVILKDDRGKDKSRL 201
Score = 101 bits (254), Expect = 1e-24
Identities = 21/149 (14%), Positives = 48/149 (32%), Gaps = 21/149 (14%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNA---------------- 44
D E+ + +Q E G Y+ + + + +
Sbjct: 54 IDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWI 113
Query: 45 ---PPIFIQRPVSTTYSTGSTSRITCLVEGH-PLPQMTWFHDGNSLDSDDHVTYEHDGFV 100
P F++ +S + + C V + W+ D + D+ ++
Sbjct: 114 RKQGPHFVE-YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICT 172
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVA 129
L++ + DAG+Y + ++ G +S
Sbjct: 173 LLITEFSKKDAGIYEVILKDDRGKDKSRL 201
Score = 65.0 bits (158), Expect = 6e-12
Identities = 14/110 (12%), Positives = 33/110 (30%), Gaps = 6/110 (5%)
Query: 326 VVKPFDMRAPAGSSVEIP-CKPDGEPLPRISWSKDEAEFVEDRNHKIH---RTGSLRLY- 380
+ V ++++ +E E E +K+H TG + ++
Sbjct: 6 TKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFM 65
Query: 381 -NIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASK 429
+ +D G Y + + + L ++ R+ K
Sbjct: 66 EKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRK 115
Score = 42.2 bits (99), Expect = 3e-04
Identities = 8/43 (18%), Positives = 17/43 (39%)
Query: 2 DDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNA 44
D + L+I+ ++ G Y + + G + L + A
Sbjct: 165 DFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA 207
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 134 bits (337), Expect = 4e-35
Identities = 47/287 (16%), Positives = 87/287 (30%), Gaps = 37/287 (12%)
Query: 44 APPIFIQRPVSTTYSTGSTSRITCLVEGH---PLPQMTWFHDGNSLDSDDHVTYEHDGFV 100
A P + P + + C ++G Q+ L+ VTY +D F
Sbjct: 4 ATPPQLVSPRVLE--VDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT--VTYGNDSFS 59
Query: 101 LVLN---GVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVE 157
+ + C S E++ + I P V G+ V
Sbjct: 60 AKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSF--PAPNVILTKPEVSEGTEVT 117
Query: 158 IPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 217
+ C+ P +++ + A+ + R L L + + C+A+ +
Sbjct: 118 VKCE--AHPRAKVTLNGVPAQPLGPRAQ-------LLLKATPEDNGRSFSCSATLEVAGQ 168
Query: 218 V----AEGYLTVTGAPPI-FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDS 272
+ L V P + P + T+ S C G+PLP++ DG
Sbjct: 169 LIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLP 228
Query: 273 DDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 319
V G Y C A++++G + +
Sbjct: 229 IGE-----------SVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 264
Score = 132 bits (333), Expect = 1e-34
Identities = 43/282 (15%), Positives = 73/282 (25%), Gaps = 33/282 (11%)
Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCKPDG---EPLPRISWSKDEAEF--VEDRNHKIHRTG 191
P+LV + + C DG ++ + + +
Sbjct: 5 TPPQLVSPRV---LEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAK 61
Query: 192 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITC 251
+ + + C +T+ P S G+ + C
Sbjct: 62 ASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPA-PNVILTKPEVSEGTEVTVKC 120
Query: 252 LVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES 311
E HP ++T +G L+L E + ++C A
Sbjct: 121 --EAHPRAKVTL--NGVPAQPLGPRAQ------LLLKATPEDNGRSFSCSATLEVAGQLI 170
Query: 312 V--AMIRINGHRAPRLVV--KPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDR 367
+ PRL P + P S C+ G PLP + KD +
Sbjct: 171 HKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLP-- 228
Query: 368 NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
+ G Y C A + GE E + V
Sbjct: 229 --------IGESVTVTRDLEGTYLCRARSTQGEVTREVTVNV 262
Score = 129 bits (326), Expect = 1e-33
Identities = 43/229 (18%), Positives = 66/229 (28%), Gaps = 24/229 (10%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTG 60
+D S+ V + E R +C VT+ + P S G
Sbjct: 54 GNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEG 113
Query: 61 STSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN 120
+ + C E HP ++T +G L+L E + ++C A
Sbjct: 114 TEVTVKC--EAHPRAKVTL--NGVPAQPLGPRAQ------LLLKATPEDNGRSFSCSATL 163
Query: 121 SEGSAESV--AMIRINGHRAPRLVV--KPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDE 176
+ PRL P + P S C+ G PLP + KD
Sbjct: 164 EVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDG 223
Query: 177 AEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
+ + G Y C A + GE E + V
Sbjct: 224 TFPLP----------IGESVTVTRDLEGTYLCRARSTQGEVTREVTVNV 262
Score = 90.9 bits (225), Expect = 2e-20
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 17/136 (12%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAG----VYRGDLHVTVNAPPIFIQR--PVSTTYST 59
+L++ ++G +SC A + V P +R P + T+
Sbjct: 140 PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPE 199
Query: 60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 119
S C G+PLP++ DG V G Y C A+
Sbjct: 200 NSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE-----------SVTVTRDLEGTYLCRAR 248
Query: 120 NSEGSAESVAMIRING 135
+++G + +
Sbjct: 249 STQGEVTREVTVNVLS 264
Score = 76.6 bits (188), Expect = 2e-15
Identities = 31/205 (15%), Positives = 59/205 (28%), Gaps = 21/205 (10%)
Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGH---PLPQMTWFHDGNSLDSDDHVTYEHDGFV 284
A P + P + + C ++G Q+ L+ VTY +D F
Sbjct: 4 ATPPQLVSPRVLE--VDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT--VTYGNDSFS 59
Query: 285 LVLN---GVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVE 341
+ + C S E++ + I P V G+ V
Sbjct: 60 AKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSF--PAPNVILTKPEVSEGTEVT 117
Query: 342 IPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 401
+ C+ P +++ + A+ + R L L + + C+A+ +
Sbjct: 118 VKCE--AHPRAKVTLNGVPAQPLGPRAQ-------LLLKATPEDNGRSFSCSATLEVAGQ 168
Query: 402 VAEGYLTVTGENSVEPAPHTSREPS 426
+ T P P
Sbjct: 169 LIHKNQTRELRVLYGPRLDERDCPG 193
Score = 43.9 bits (103), Expect = 1e-04
Identities = 11/44 (25%), Positives = 16/44 (36%)
Query: 2 DDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAP 45
D V R+ G Y C A + G ++ V V +P
Sbjct: 222 DGTFPLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 265
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 133 bits (335), Expect = 2e-34
Identities = 44/307 (14%), Positives = 86/307 (28%), Gaps = 54/307 (17%)
Query: 45 PPIFIQRPVSTTYSTGSTSRITCLVEG-HPLPQM---TWFHDGNSLDSDDHVTYEHDGFV 100
+ + G +T V G PLP TW D +++
Sbjct: 2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTAT-------- 53
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAES-VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIP 159
L + +AG Y Q+++ + + + +P + + VE+
Sbjct: 54 LTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELH 113
Query: 160 CK--------PDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTAS 211
P SWSK E I T + + +G+Y
Sbjct: 114 ATVKFSGGKTPADNYELHYSWSKGEDV--------IDTTQDITIQEFTADKNGVYTVKVW 165
Query: 212 NLLGEDVAEGYLTVTGAPPIFIQRPV--STTYSTGSTSRITCLVE--------GHPLP-- 259
+ A + + + + V S T + G+ + +V G P
Sbjct: 166 GESEDSAASASTKIM-LATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTI 224
Query: 260 QMTWFHDGN-----------SLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 308
+ W+ ++ + + DG L D + CVA+ +
Sbjct: 225 KYNWYLQREGQLSPTLIGSEVGEALEGFSITPDG-HLFKESATYDDTAKFWCVAKLYQQI 283
Query: 309 AESVAMI 315
+ +
Sbjct: 284 EDETVEV 290
Score = 115 bits (288), Expect = 2e-28
Identities = 49/326 (15%), Positives = 96/326 (29%), Gaps = 65/326 (19%)
Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDG-EPLPR---ISWSKDEAEFVEDRNHKIHRTGSL 193
A + ++ AG + G EPLP +W+KD+ + T +L
Sbjct: 2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN-------TATL 54
Query: 194 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT--GAPPIFIQRPVSTTYSTGSTSRITC 251
+ + +++G Y+ T + E + + + I P S+ + +
Sbjct: 55 TVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHA 114
Query: 252 LVE---GHPLPQM-----TWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 303
V+ G +W + +D+ + + GVY
Sbjct: 115 TVKFSGGKTPADNYELHYSWSKGEDVIDTTQ---------DITIQEFTADKNGVYTVKVW 165
Query: 304 NSEGSAESVAMIRINGHRAPRLVVKPF--DMRAPAGSSVEIPCKP--------DGEPLPR 353
+ + A +I A V + G+ + + G P
Sbjct: 166 GESEDSAASASTKIML--ATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLT 223
Query: 354 ISWS---KDEAEFVE----------DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE 400
I ++ + E + I G L + D+ + C A
Sbjct: 224 IKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQI 283
Query: 401 DVAEGYLTVTGENSVEPAPHTSREPS 426
+ + +VE A TSR+ S
Sbjct: 284 E----------DETVEVAASTSRKCS 299
Score = 103 bits (257), Expect = 3e-24
Identities = 32/218 (14%), Positives = 58/218 (26%), Gaps = 35/218 (16%)
Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEG-HPLPQM---TWFHDGNSLDSDDHVTYEHDGFV 284
+ + G +T V G PLP TW D +++
Sbjct: 2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTAT-------- 53
Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAES-VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIP 343
L + +AG Y Q+++ + + + +P + + VE+
Sbjct: 54 LTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELH 113
Query: 344 CK--------PDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTAS 395
P SWSK E I T + + +G+Y
Sbjct: 114 ATVKFSGGKTPADNYELHYSWSKGEDV--------IDTTQDITIQEFTADKNGVYTVKVW 165
Query: 396 NLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVA 433
+ A + A + +VA
Sbjct: 166 GESEDSAASASTKIM------LATMNVDQDVVESKTVA 197
Score = 95.7 bits (237), Expect = 1e-21
Identities = 29/255 (11%), Positives = 66/255 (25%), Gaps = 45/255 (17%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGD---LHVTVNAPPIFIQRPVSTTYSTGST 62
++ L ++ E+ G Y + + + + + I P S+ +
Sbjct: 50 NTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTD 109
Query: 63 SRITCLVE---GHPLPQM-----TWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVY 114
+ V+ G +W + +D+ + + GVY
Sbjct: 110 VELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQ---------DITIQEFTADKNGVY 160
Query: 115 NCVAQNSEGSAESVAMIRINGHRAPRLVVKPF--DMRAPAGSSVEIPCKP--------DG 164
+ + A +I A V + G+ + + G
Sbjct: 161 TVKVWGESEDSAASASTKIML--ATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSG 218
Query: 165 EPLPRISWS---KDEAEFVE----------DRNHKIHRTGSLRLYNIGPQDSGLYRCTAS 211
P I ++ + E + I G L + D+ + C A
Sbjct: 219 MPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAK 278
Query: 212 NLLGEDVAEGYLTVT 226
+ + +
Sbjct: 279 LYQQIEDETVEVAAS 293
Score = 33.6 bits (76), Expect = 0.29
Identities = 5/36 (13%), Positives = 11/36 (30%)
Query: 9 ELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNA 44
L + ++ CVA + + V +
Sbjct: 259 HLFKESATYDDTAKFWCVAKLYQQIEDETVEVAAST 294
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 132 bits (334), Expect = 6e-34
Identities = 39/195 (20%), Positives = 60/195 (30%), Gaps = 17/195 (8%)
Query: 46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH-VTYEHDGFVLVLN 104
P + + + G + C VEG L Q W + + + N
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLAN 218
Query: 105 GVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDG 164
+ + C A+N G AE + A IP DG
Sbjct: 219 VTSDLNRKNVTCWAENDVGRAEVSVQVN------VSFPASVQLHTAVEMHHWCIPFSVDG 272
Query: 165 EPLPRISWSKD----------EAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLL 214
+P P + W + EF+E ++ R G LRL ++G Y A+N
Sbjct: 273 QPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPF 332
Query: 215 GEDVAEGYLTVTGAP 229
G+ A P
Sbjct: 333 GQASASIMAAFMDNP 347
Score = 129 bits (325), Expect = 8e-33
Identities = 38/192 (19%), Positives = 59/192 (30%), Gaps = 17/192 (8%)
Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH-VTYEHDGFVLVLN 288
P + + + G + C VEG L Q W + + + N
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLAN 218
Query: 289 GVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDG 348
+ + C A+N G AE + A IP DG
Sbjct: 219 VTSDLNRKNVTCWAENDVGRAEVSVQVN------VSFPASVQLHTAVEMHHWCIPFSVDG 272
Query: 349 EPLPRISWSKD----------EAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLL 398
+P P + W + EF+E ++ R G LRL ++G Y A+N
Sbjct: 273 QPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPF 332
Query: 399 GEDVAEGYLTVT 410
G+ A
Sbjct: 333 GQASASIMAAFM 344
Score = 96.7 bits (240), Expect = 1e-21
Identities = 27/143 (18%), Positives = 44/143 (30%), Gaps = 13/143 (9%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTG 60
+ S + + + +C A N G + V V+ P +
Sbjct: 206 SGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHW- 264
Query: 61 STSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV---------LVLNGVRESDA 111
I V+G P P + W +G+ L+ + E L LN +
Sbjct: 265 ---CIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNN 321
Query: 112 GVYNCVAQNSEGSAESVAMIRIN 134
G Y +A N G A + M
Sbjct: 322 GNYTLLAANPFGQASASIMAAFM 344
Score = 43.6 bits (102), Expect = 2e-04
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP 46
L ++ + G Y+ +A NP G + P
Sbjct: 311 LRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 123 bits (309), Expect = 4e-32
Identities = 37/192 (19%), Positives = 56/192 (29%), Gaps = 30/192 (15%)
Query: 150 APAGSSVEIPCKPD---GEPLPRISWSKD--------------EAEFVEDRN------HK 186
A G V + P +SW K + F+E H+
Sbjct: 3 AFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHR 62
Query: 187 IHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGST 246
T L + G Y C E + +L+V P + + S
Sbjct: 63 SANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVV-KPLTLSVHSERSQFPDFSV 121
Query: 247 SRITCLVEGHPLPQMTWFHDGNSL----DSDDHVTYEHDG--FVLVLNGVRESDAGVYNC 300
+TC V P P + W ++ V E DG V V + + C
Sbjct: 122 LTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTC 181
Query: 301 VAQNSEGSAESV 312
V +N + A V
Sbjct: 182 VGKNDKEEAHGV 193
Score = 116 bits (292), Expect = 7e-30
Identities = 27/129 (20%), Positives = 43/129 (33%), Gaps = 6/129 (4%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRI 65
++ LV++ H G Y C H++V P + + S +
Sbjct: 65 NTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTV 124
Query: 66 TCLVEGHPLPQMTWFHDGNSL----DSDDHVTYEHDG--FVLVLNGVRESDAGVYNCVAQ 119
TC V P P + W ++ V E DG V V + + CV +
Sbjct: 125 TCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGK 184
Query: 120 NSEGSAESV 128
N + A V
Sbjct: 185 NDKEEAHGV 193
Score = 114 bits (287), Expect = 3e-29
Identities = 39/214 (18%), Positives = 60/214 (28%), Gaps = 31/214 (14%)
Query: 211 SNLLGEDV--AEGYLTVTGAPPI----FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWF 264
+ LGE V + V+ P I F P G + P
Sbjct: 2 TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIG-RMHHDVIFIEWPFRGFFDI 60
Query: 265 HDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPR 324
H + F LV+ S G Y C + E + + +
Sbjct: 61 HR------------SANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSV--VKPLT 106
Query: 325 LVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDE----AEFVEDRNHKIHRTGSLRL- 379
L V + P S + + C + P P + W E A + + GSL +
Sbjct: 107 LSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVA 166
Query: 380 --YNIGPQDSGLYRCTASNLLGEDVA---EGYLT 408
++ C N E GYL+
Sbjct: 167 VDLSLPKPWHLPVTCVGKNDKEEAHGVYVSGYLS 200
Score = 110 bits (276), Expect = 9e-28
Identities = 37/201 (18%), Positives = 58/201 (28%), Gaps = 34/201 (16%)
Query: 56 TYSTGSTSRITCL---VEGHPLPQMTWFHDGNSLDSDDHVTYEHD--------------- 97
T G +T V P +++WF G + HD
Sbjct: 2 TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIH 61
Query: 98 ----GFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAG 153
F LV+ S G Y C + E + + + L V + P
Sbjct: 62 RSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSV--VKPLTLSVHSERSQFPDF 119
Query: 154 SSVEIPCKPDGEPLPRISWSKDE----AEFVEDRNHKIHRTGSLRL---YNIGPQDSGLY 206
S + + C + P P + W E A + + GSL + ++
Sbjct: 120 SVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPV 179
Query: 207 RCTASNLLGEDVA---EGYLT 224
C N E GYL+
Sbjct: 180 TCVGKNDKEEAHGVYVSGYLS 200
Score = 52.0 bits (124), Expect = 1e-07
Identities = 20/116 (17%), Positives = 30/116 (25%), Gaps = 25/116 (21%)
Query: 334 APAGSSVEIPCKPD---GEPLPRISWSKD--------------EAEFVEDRN------HK 370
A G V + P +SW K + F+E H+
Sbjct: 3 AFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHR 62
Query: 371 IHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG--ENSVEPAPHTSRE 424
T L + G Y C E + +L+V SV +
Sbjct: 63 SANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPD 118
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 122 bits (306), Expect = 1e-31
Identities = 37/202 (18%), Positives = 64/202 (31%), Gaps = 33/202 (16%)
Query: 148 MRAPAGSSVEIPCK----PDGEPLPRISWSKDEAEFVEDRNHKIHRTG------------ 191
+ G + +PCK P+ + I W ++ I +G
Sbjct: 10 IEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLK 69
Query: 192 ---------------SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRP 236
S+ + N+ D G Y+C G + LTV P +
Sbjct: 70 GRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVL-VKPSGTRCF 128
Query: 237 VSTTYSTGSTSRITCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDA 295
V + G+ ++ C EG Q W +S E V+ + +
Sbjct: 129 VDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYS 188
Query: 296 GVYNCVAQNSEGSAESVAMIRI 317
G Y+C QN GS + + + +
Sbjct: 189 GTYSCTVQNRVGSDQCMLRLDV 210
Score = 117 bits (294), Expect = 5e-30
Identities = 39/223 (17%), Positives = 73/223 (32%), Gaps = 42/223 (18%)
Query: 40 VTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQ----MTWFHDGNSLDSDDHVTYE 95
+++ P I++ G T+ + C P Q + W + D V
Sbjct: 1 LSITTPEQRIEKAK------GETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIIL 54
Query: 96 HDG--------------------------FVLVLNGVRESDAGVYNCVAQNSEGSAESVA 129
+ G + + ++ SD G Y C + + G A
Sbjct: 55 YSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKF 114
Query: 130 MIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKP-DGEPLPRISWSKD-EAEFVEDRNHKI 187
++ + P D G+ ++ C+P +G + W K +++ +
Sbjct: 115 LLTVLV--KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAE 172
Query: 188 HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPP 230
+ + + N + SG Y CT N +G D L V PP
Sbjct: 173 MTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVV--PP 213
Score = 115 bits (289), Expect = 3e-29
Identities = 41/228 (17%), Positives = 75/228 (32%), Gaps = 46/228 (20%)
Query: 223 LTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQ----MTWFHDGNSLDSDDHVTY 278
L++T P I++ G T+ + C P Q + W + D V
Sbjct: 1 LSITT-PEQRIEKAK------GETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVII 53
Query: 279 EHDG--------------------------FVLVLNGVRESDAGVYNCVAQNSEGSAESV 312
+ G + + ++ SD G Y C + + G A
Sbjct: 54 LYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKK 113
Query: 313 AMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKP-DGEPLPRISWSKD-EAEFVEDRNHK 370
++ + P D G+ ++ C+P +G + W K +++ +
Sbjct: 114 FLLTVLV--KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLA 171
Query: 371 IHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPA 418
+ + + N + SG Y CT N +G D L V V P+
Sbjct: 172 EMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDV-----VPPS 214
Score = 111 bits (278), Expect = 6e-28
Identities = 26/125 (20%), Positives = 45/125 (36%), Gaps = 1/125 (0%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLV 69
+ ++ +Q G Y C GV +TV P + V + G+ ++ C
Sbjct: 86 INVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEP 145
Query: 70 -EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESV 128
EG Q W +S E V+ + +G Y+C QN GS + +
Sbjct: 146 KEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCM 205
Query: 129 AMIRI 133
+ +
Sbjct: 206 LRLDV 210
Score = 55.5 bits (133), Expect = 1e-08
Identities = 21/124 (16%), Positives = 35/124 (28%), Gaps = 31/124 (25%)
Query: 332 MRAPAGSSVEIPCK----PDGEPLPRISWSKDEAEFVEDRNHKIHRTG------------ 375
+ G + +PCK P+ + I W ++ I +G
Sbjct: 10 IEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLK 69
Query: 376 ---------------SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPH 420
S+ + N+ D G Y+C G + LTV + S
Sbjct: 70 GRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFV 129
Query: 421 TSRE 424
E
Sbjct: 130 DGSE 133
Score = 43.1 bits (101), Expect = 2e-04
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAP 45
+S + + E+ G YSC N G + L + V P
Sbjct: 174 TSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPP 213
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 118 bits (298), Expect = 7e-31
Identities = 26/191 (13%), Positives = 52/191 (27%), Gaps = 36/191 (18%)
Query: 60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH-------------------VTYEHDGFV 100
G T +TC Q W + + ++ F
Sbjct: 10 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 69
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC 160
L++ ++ D+ Y C ++ + + + L D G S+ +
Sbjct: 70 LIIKNLKIEDSDTYICEVEDQKEEVQLLVF---------GLTANS-DTHLLQGQSLTLTL 119
Query: 161 KPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE 220
+ P + R I +L + + QDSG + CT + +
Sbjct: 120 ESPPGSSPSVQCRSP-------RGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFK 172
Query: 221 GYLTVTGAPPI 231
+ V
Sbjct: 173 IDIVVLAFQKA 183
Score = 115 bits (289), Expect = 1e-29
Identities = 26/187 (13%), Positives = 52/187 (27%), Gaps = 36/187 (19%)
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH-------------------VTYEHDGFV 284
G T +TC Q W + + ++ F
Sbjct: 10 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 69
Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC 344
L++ ++ D+ Y C ++ + + + L D G S+ +
Sbjct: 70 LIIKNLKIEDSDTYICEVEDQKEEVQLLVF---------GLTANS-DTHLLQGQSLTLTL 119
Query: 345 KPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE 404
+ P + R I +L + + QDSG + CT + +
Sbjct: 120 ESPPGSSPSVQCRSP-------RGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFK 172
Query: 405 GYLTVTG 411
+ V
Sbjct: 173 IDIVVLA 179
Score = 110 bits (275), Expect = 9e-28
Identities = 23/190 (12%), Positives = 45/190 (23%), Gaps = 37/190 (19%)
Query: 150 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI--------------------HR 189
G +VE+ C + + W +
Sbjct: 7 GKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG 66
Query: 190 TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRI 249
L + N+ +DS Y C + E V +T + G + +
Sbjct: 67 NFPLIIKNLKIEDSDTYICEVEDQKEE-VQLLVFGLTANSDTHLL--------QGQSLTL 117
Query: 250 TCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA 309
T P + L ++ + D+G + C ++
Sbjct: 118 TLESPPGSSPSVQCRSPRGKNIQGGK--------TLSVSQLELQDSGTWTCTVLQNQKKV 169
Query: 310 ESVAMIRING 319
E I +
Sbjct: 170 EFKIDIVVLA 179
Score = 87.7 bits (217), Expect = 5e-20
Identities = 17/131 (12%), Positives = 36/131 (27%), Gaps = 16/131 (12%)
Query: 5 RSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSR 64
+ + L+I ++ E Y C + + L + A T G +
Sbjct: 65 QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQ-LLVFGLTANS-------DTHLLQGQSLT 116
Query: 65 ITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 124
+T P + L ++ + D+G + C ++
Sbjct: 117 LTLESPPGSSPSVQCRSPRGKNIQGGK--------TLSVSQLELQDSGTWTCTVLQNQKK 168
Query: 125 AESVAMIRING 135
E I +
Sbjct: 169 VEFKIDIVVLA 179
Score = 55.4 bits (133), Expect = 7e-09
Identities = 14/103 (13%), Positives = 25/103 (24%), Gaps = 21/103 (20%)
Query: 334 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI--------------------HR 373
G +VE+ C + + W +
Sbjct: 7 GKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG 66
Query: 374 TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVE 416
L + N+ +DS Y C + E V +T +
Sbjct: 67 NFPLIIKNLKIEDSDTYICEVEDQKEE-VQLLVFGLTANSDTH 108
Score = 41.5 bits (97), Expect = 4e-04
Identities = 7/49 (14%), Positives = 15/49 (30%), Gaps = 5/49 (10%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVS 54
L +S ++ + G ++C + + V A S
Sbjct: 141 GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ-----KAS 184
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 119 bits (299), Expect = 1e-30
Identities = 35/191 (18%), Positives = 63/191 (32%), Gaps = 21/191 (10%)
Query: 141 LVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDE--------AEFVEDRN-------- 184
+ ++ + ++V + L +W K A FV + N
Sbjct: 2 VTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAY 61
Query: 185 ---HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV-AEGYLTVTGAPPIFIQRPVSTT 240
I+ GSL I +D G+Y ++ A V + +TT
Sbjct: 62 SGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT 121
Query: 241 YSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNC 300
+ +TCL + W + SL + +T + +L ++ ++ DAG Y C
Sbjct: 122 VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQC 180
Query: 301 VAQNSEGSAES 311
N S
Sbjct: 181 EISNPVSVRRS 191
Score = 97.8 bits (243), Expect = 3e-23
Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 3/125 (2%)
Query: 5 RSSTELVISGVQREHGGRYSCVAGNPAGVYRGD--LHVTVNAPPIFIQRPVSTTYSTGST 62
S+ L+ + + G Y+ + + +TT +
Sbjct: 68 YSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDS 127
Query: 63 SRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE 122
+TCL + W + SL + +T + +L ++ ++ DAG Y C N
Sbjct: 128 VTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPV 186
Query: 123 GSAES 127
S
Sbjct: 187 SVRRS 191
Score = 97.4 bits (242), Expect = 4e-23
Identities = 28/210 (13%), Positives = 58/210 (27%), Gaps = 29/210 (13%)
Query: 40 VTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF 99
VT+ A P + + + L W+ + + + +
Sbjct: 2 VTIEAVPPQVAE--------DNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSN 53
Query: 100 V------------------LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRL 141
+ L+ + D GVY + + +
Sbjct: 54 MNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQP 113
Query: 142 VVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGS-LRLYNIGP 200
++ + SV + C + I W + + + S LR+ I
Sbjct: 114 FLQVTNTTVKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKR 172
Query: 201 QDSGLYRCTASNLLGEDVAEG-YLTVTGAP 229
+D+G Y+C SN + + L + P
Sbjct: 173 EDAGEYQCEISNPVSVRRSNSIKLDIIFDP 202
Score = 95.5 bits (237), Expect = 2e-22
Identities = 23/186 (12%), Positives = 51/186 (27%), Gaps = 21/186 (11%)
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV------------------L 285
+ + L W+ + + + + + L
Sbjct: 14 DNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSL 73
Query: 286 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK 345
+ + D GVY + + + ++ + SV + C
Sbjct: 74 LFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCL 133
Query: 346 PDGEPLPRISWSKDEAEFVEDRNHKIHRTGS-LRLYNIGPQDSGLYRCTASNLLGEDVAE 404
+ I W + + + S LR+ I +D+G Y+C SN + +
Sbjct: 134 SNDIG-ANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSN 192
Query: 405 G-YLTV 409
L +
Sbjct: 193 SIKLDI 198
Score = 50.8 bits (121), Expect = 4e-07
Identities = 19/122 (15%), Positives = 35/122 (28%), Gaps = 20/122 (16%)
Query: 325 LVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDE--------AEFVEDRN-------- 368
+ ++ + ++V + L +W K A FV + N
Sbjct: 2 VTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAY 61
Query: 369 ---HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV-AEGYLTVTGENSVEPAPHTSRE 424
I+ GSL I +D G+Y ++ A V + T+
Sbjct: 62 SGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT 121
Query: 425 PS 426
Sbjct: 122 VK 123
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide;
HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP:
a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C*
1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C*
Length = 466
Score = 124 bits (313), Expect = 2e-30
Identities = 49/115 (42%), Positives = 71/115 (61%)
Query: 515 EDLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAVSLD 574
+ L + FF+ WR+V EGG+DP+LRG + +PAK R + E+ ++LF + LD
Sbjct: 245 PRVPLSRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIAVDEIRERLFEQVMRIGLD 304
Query: 575 LAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHP 629
L A+N+QR RDHG+P YNAWR +CGLP+ T L + + ++ KL YG P
Sbjct: 305 LPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTP 359
Score = 88.0 bits (217), Expect = 2e-18
Identities = 32/76 (42%), Positives = 46/76 (60%)
Query: 792 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQAS 851
NID ++G + E GRVGP + C++ QF+++RDGDRFW+EN F Q + Q S
Sbjct: 361 NIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFWWENEGVFSMQQRQALAQIS 420
Query: 852 LARVICDSGDRLTEVR 867
L R+ICD+ T +
Sbjct: 421 LPRIICDNTGITTVSK 436
Score = 53.3 bits (127), Expect = 3e-07
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 718 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDG 754
NID ++G + E GRVGP + C++ QF+++RDG
Sbjct: 361 NIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDG 397
Score = 43.7 bits (102), Expect = 2e-04
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 914 IDCKKSCAFSPPCFPMEVPHDDP 936
++C+ SC PPCFP+++P +DP
Sbjct: 1 VNCETSCVQQPPCFPLKIPPNDP 23
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 114 bits (286), Expect = 2e-29
Identities = 39/188 (20%), Positives = 56/188 (29%), Gaps = 24/188 (12%)
Query: 52 PVSTTYST-GSTSRITCLVEGHPLP--QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRE 108
V TT GS +TC + W G L D G +
Sbjct: 4 TVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKED-----ALPGQKTEFKVDSD 58
Query: 109 SDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP 168
G Y+CV E + I H PR+ G + + CK + P
Sbjct: 59 DQWGEYSCVFLP-----EPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPV 113
Query: 169 -RISWSKDEAEFVEDRNHKI---------HRTGSLRLYNIGPQ-DSGLYRCTASNLLGED 217
+W K + + L + N+ + D G YRC ++ G D
Sbjct: 114 TDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSD 173
Query: 218 VAEGYLTV 225
A L V
Sbjct: 174 QAIITLRV 181
Score = 114 bits (286), Expect = 2e-29
Identities = 39/188 (20%), Positives = 56/188 (29%), Gaps = 24/188 (12%)
Query: 236 PVSTTYST-GSTSRITCLVEGHPLP--QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRE 292
V TT GS +TC + W G L D G +
Sbjct: 4 TVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKED-----ALPGQKTEFKVDSD 58
Query: 293 SDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP 352
G Y+CV E + I H PR+ G + + CK + P
Sbjct: 59 DQWGEYSCVFLP-----EPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPV 113
Query: 353 -RISWSKDEAEFVEDRNHKI---------HRTGSLRLYNIGPQ-DSGLYRCTASNLLGED 401
+W K + + L + N+ + D G YRC ++ G D
Sbjct: 114 TDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSD 173
Query: 402 VAEGYLTV 409
A L V
Sbjct: 174 QAIITLRV 181
Score = 107 bits (268), Expect = 7e-27
Identities = 35/183 (19%), Positives = 55/183 (30%), Gaps = 20/183 (10%)
Query: 150 APAGSSVEIPCKPDGEPLPRIS--WSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYR 207
GS + + C + W K ED G Y
Sbjct: 10 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP----GQKTEFKVDSDDQWGEYS 65
Query: 208 CTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQM-TWFHD 266
C E + + + PP S + G T+ + C E P W+
Sbjct: 66 CVFLP---EPMGTANIQLH-GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKI 121
Query: 267 GNSLD------SDDHVTYEHDGFVLVL---NGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
+S D S+ L N E+D G Y C +S+GS +++ +R+
Sbjct: 122 TDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181
Query: 318 NGH 320
H
Sbjct: 182 RSH 184
Score = 100 bits (250), Expect = 2e-24
Identities = 31/146 (21%), Positives = 52/146 (35%), Gaps = 13/146 (8%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTG 60
+D + + G YSCV G ++ ++ PP S + G
Sbjct: 42 KEDALPGQKTEFKVDSDDQWGEYSCVFLPEPM---GTANIQLHGPPRVKAVKSSEHINEG 98
Query: 61 STSRITCLVEGHPLPQM-TWFHDGNSLD------SDDHVTYEHDGFVLVL---NGVRESD 110
T+ + C E P W+ +S D S+ L N E+D
Sbjct: 99 ETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEAD 158
Query: 111 AGVYNCVAQNSEGSAESVAMIRINGH 136
G Y C +S+GS +++ +R+ H
Sbjct: 159 PGQYRCNGTSSKGSDQAIITLRVRSH 184
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 114 bits (286), Expect = 3e-29
Identities = 35/180 (19%), Positives = 63/180 (35%), Gaps = 31/180 (17%)
Query: 153 GSSVE--IPCKPDGEPLPRISWSK------------DEAEFVEDRNHKIHRTGSLRLYNI 198
G + IP + + I W K ++ F E +K+ + G+L++ ++
Sbjct: 14 GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHL 73
Query: 199 GPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVS--TTYSTGSTSRITCLVEGH 256
D +Y+ + + G++V E + IQ VS T + +TC V
Sbjct: 74 KTDDQDIYKVSIYDTKGKNVLEKIFDLK------IQERVSKPKISWTCINTTLTCEVMNG 127
Query: 257 PLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR 316
P++ + DG L V S + + C A N SV +
Sbjct: 128 TDPELNLYQDGKHLKLSQRVITHK---------WTTSLSAKFKCTAGNKVSKESSVEPVS 178
Score = 90.7 bits (225), Expect = 5e-21
Identities = 18/177 (10%), Positives = 51/177 (28%), Gaps = 26/177 (14%)
Query: 248 RITCLVEGHPLPQMTWFHDGN------------SLDSDDHVTYEHDGFVLVLNGVRESDA 295
I + + W + + D +G L + ++ D
Sbjct: 20 DIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG-TLKIKHLKTDDQ 78
Query: 296 GVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRIS 355
+Y +++G + + KP + + C+ P ++
Sbjct: 79 DIYKVSIYDTKGKNVLEKIFDLKIQERVS---KPKISWT--CINTTLTCEVMNGTDPELN 133
Query: 356 WSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGE 412
+D + + + + S ++CTA N + ++ + ++ +
Sbjct: 134 LYQD--------GKHLKLSQRVITHKWTTSLSAKFKCTAGNKVSKESSVEPVSCPEK 182
Score = 89.9 bits (223), Expect = 8e-21
Identities = 18/176 (10%), Positives = 50/176 (28%), Gaps = 26/176 (14%)
Query: 64 RITCLVEGHPLPQMTWFHDGN------------SLDSDDHVTYEHDGFVLVLNGVRESDA 111
I + + W + + D +G L + ++ D
Sbjct: 20 DIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG-TLKIKHLKTDDQ 78
Query: 112 GVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRIS 171
+Y +++G + + KP + + C+ P ++
Sbjct: 79 DIYKVSIYDTKGKNVLEKIFDLKIQERVS---KPKISWT--CINTTLTCEVMNGTDPELN 133
Query: 172 WSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 227
+D + + + + S ++CTA N + ++ + ++
Sbjct: 134 LYQD--------GKHLKLSQRVITHKWTTSLSAKFKCTAGNKVSKESSVEPVSCPE 181
Score = 84.5 bits (209), Expect = 5e-19
Identities = 23/125 (18%), Positives = 37/125 (29%), Gaps = 16/125 (12%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVS--TTYSTGSTSRITC 67
L I ++ + Y + G + + IQ VS T + +TC
Sbjct: 68 LKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLK-----IQERVSKPKISWTCINTTLTC 122
Query: 68 LVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES 127
V P++ + DG L V S + + C A N S
Sbjct: 123 EVMNGTDPELNLYQDGKHLKLSQRVITHK---------WTTSLSAKFKCTAGNKVSKESS 173
Query: 128 VAMIR 132
V +
Sbjct: 174 VEPVS 178
Score = 65.7 bits (160), Expect = 2e-12
Identities = 16/88 (18%), Positives = 36/88 (40%), Gaps = 14/88 (15%)
Query: 337 GSSVE--IPCKPDGEPLPRISWSK------------DEAEFVEDRNHKIHRTGSLRLYNI 382
G + IP + + I W K ++ F E +K+ + G+L++ ++
Sbjct: 14 GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHL 73
Query: 383 GPQDSGLYRCTASNLLGEDVAEGYLTVT 410
D +Y+ + + G++V E +
Sbjct: 74 KTDDQDIYKVSIYDTKGKNVLEKIFDLK 101
Score = 33.7 bits (77), Expect = 0.13
Identities = 6/38 (15%), Positives = 12/38 (31%)
Query: 5 RSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV 42
+ S ++ ++ C AGN V+
Sbjct: 142 KLSQRVITHKWTTSLSAKFKCTAGNKVSKESSVEPVSC 179
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 110 bits (277), Expect = 6e-29
Identities = 29/99 (29%), Positives = 43/99 (43%)
Query: 37 DLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH 96
L V P + T S G + ++C G+P PQ+ WF D +L D + +
Sbjct: 2 QLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD 61
Query: 97 DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 135
L + VR+ D G+Y C A + G A+ A I G
Sbjct: 62 GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG 100
Score = 105 bits (265), Expect = 2e-27
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Query: 222 YLTVT-GAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH 280
LTV P + T S G + ++C G+P PQ+ WF D +L D + +
Sbjct: 2 QLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD 61
Query: 281 DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 319
L + VR+ D G+Y C A + G A+ A I G
Sbjct: 62 GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG 100
Score = 98.6 bits (246), Expect = 1e-24
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
Query: 131 IRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT 190
+ + AP + + G S+E+ C G P P+I W KD VED +
Sbjct: 3 LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDG 62
Query: 191 G-SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAP 229
+L + + +D GLY C A ++LG E + + GA
Sbjct: 63 NRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQ 102
Score = 95.5 bits (238), Expect = 1e-23
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Query: 315 IRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT 374
+ + AP + + G S+E+ C G P P+I W KD VED +
Sbjct: 3 LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDG 62
Query: 375 G-SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
+L + + +D GLY C A ++LG E + + G
Sbjct: 63 NRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG 100
Score = 45.8 bits (109), Expect = 4e-06
Identities = 9/43 (20%), Positives = 17/43 (39%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIF 48
+ L I V++E G Y+C A + G + + +
Sbjct: 62 GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEK 104
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase,
phenyl isothiocyanat iodide, PEG, edman reagent; HET:
SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A*
2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A*
3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A*
3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...
Length = 595
Score = 119 bits (298), Expect = 5e-28
Identities = 47/132 (35%), Positives = 74/132 (56%), Gaps = 1/132 (0%)
Query: 499 SHIKKHIQAGVKMNLSEDLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNK 558
S + + + +L L FF+ WR++ +GG+DPL+RG + +K + +
Sbjct: 356 STVSRLDENYQPWGPEAELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTS 415
Query: 559 ELTDKLFTTFHAVS-LDLAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRR 617
EL +KLF H + DLAA+N+QR RDHG+P YN+WR +CGL + T + L + ++
Sbjct: 416 ELRNKLFQPTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKI 475
Query: 618 VRDKLQRLYGHP 629
+ KL LY P
Sbjct: 476 LAKKLMDLYKTP 487
Score = 85.8 bits (211), Expect = 2e-17
Identities = 34/70 (48%), Positives = 47/70 (67%)
Query: 792 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYENPSTFKPAQLTQIKQAS 851
NID ++G E V+ GRVGP + CLL QF++IRDGDRFW+ENP F Q +++ S
Sbjct: 489 NIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKVS 548
Query: 852 LARVICDSGD 861
+R+ICD+
Sbjct: 549 FSRLICDNTH 558
Score = 81.9 bits (201), Expect = 4e-16
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 649 SGCMEHQRTANCSDLCFHTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVA 708
GC C + ++ YRTI G CNN + P GA+ R L YE+G + P
Sbjct: 4 VGCGAPVPLVKCDE---NSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFG 60
Query: 709 PILSSPMAGN 718
G
Sbjct: 61 WTQRKTRNGF 70
Score = 59.6 bits (143), Expect = 3e-09
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 865 EVRVCFSPRPTTSITPDPVITHMVMQWGQFLDHDLDHAIPATSLES-WEGIDCKKSCAFS 923
EV D + + MQWGQ +DHDLD A + C++ C
Sbjct: 77 EVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETELGSNEHSKTQCEEYCIQG 136
Query: 924 PPCFPMEVPHDDP 936
CFP+ P +DP
Sbjct: 137 DNCFPIMFPKNDP 149
Score = 46.9 bits (110), Expect = 3e-05
Identities = 20/37 (54%), Positives = 26/37 (70%)
Query: 718 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDG 754
NID ++G E V+ GRVGP + CLL QF++IRDG
Sbjct: 489 NIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDG 525
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 108 bits (271), Expect = 2e-27
Identities = 32/131 (24%), Positives = 49/131 (37%), Gaps = 7/131 (5%)
Query: 12 ISGVQREHGGRYSCV----AGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITC 67
+SG + S + N + P F + + GS +R C
Sbjct: 4 MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDC 63
Query: 68 LVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG---FVLVLNGVRESDAGVYNCVAQNSEGS 124
VEG+P P++ WF D N + H ++D L ++ V D Y C A NS G
Sbjct: 64 KVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGE 123
Query: 125 AESVAMIRING 135
A A + +
Sbjct: 124 ATCTAELLVET 134
Score = 105 bits (264), Expect = 1e-26
Identities = 31/131 (23%), Positives = 48/131 (36%), Gaps = 6/131 (4%)
Query: 195 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT---GAPPIFIQRPVSTTYSTGSTSRITC 251
+ S +N + + A P F + + GS +R C
Sbjct: 4 MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDC 63
Query: 252 LVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG---FVLVLNGVRESDAGVYNCVAQNSEGS 308
VEG+P P++ WF D N + H ++D L ++ V D Y C A NS G
Sbjct: 64 KVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGE 123
Query: 309 AESVAMIRING 319
A A + +
Sbjct: 124 ATCTAELLVET 134
Score = 104 bits (260), Expect = 4e-26
Identities = 33/144 (22%), Positives = 51/144 (35%), Gaps = 6/144 (4%)
Query: 287 LNGVRESDAGVYNCVAQNSEGSAESV--AMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC 344
++G + S + + + N + ++ + H P DM GS+ C
Sbjct: 4 MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDC 63
Query: 345 KPDGEPLPRISWSKDEAEFVEDRNHKIHRTG----SLRLYNIGPQDSGLYRCTASNLLGE 400
K +G P P + W KD+ E R+ +I SL + + D Y C A N LGE
Sbjct: 64 KVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGE 123
Query: 401 DVAEGYLTVTGENSVEPAPHTSRE 424
L V E
Sbjct: 124 ATCTAELLVETMGKEGEGEGEGEE 147
Score = 103 bits (259), Expect = 6e-26
Identities = 32/133 (24%), Positives = 50/133 (37%), Gaps = 6/133 (4%)
Query: 103 LNGVRESDAGVYNCVAQNSEGSAESV--AMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC 160
++G + S + + + N + ++ + H P DM GS+ C
Sbjct: 4 MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDC 63
Query: 161 KPDGEPLPRISWSKDEAEFVEDRNHKIHRTG----SLRLYNIGPQDSGLYRCTASNLLGE 216
K +G P P + W KD+ E R+ +I SL + + D Y C A N LGE
Sbjct: 64 KVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGE 123
Query: 217 DVAEGYLTVTGAP 229
L V
Sbjct: 124 ATCTAELLVETMG 136
Score = 38.3 bits (89), Expect = 0.003
Identities = 10/47 (21%), Positives = 15/47 (31%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTT 56
L IS V + +Y+C A N G + V +
Sbjct: 100 LTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEGEGEGEGE 146
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 107 bits (269), Expect = 8e-27
Identities = 32/190 (16%), Positives = 63/190 (33%), Gaps = 18/190 (9%)
Query: 150 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVED------------RNHKIHRTGSLRLYN 197
GSSV + C D + + + VE+ + +
Sbjct: 14 VDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPS 73
Query: 198 IGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHP 257
+ +DSG YRC G YLTV ++TC G+P
Sbjct: 74 VQVRDSGQYRCLVIC--GAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYP 131
Query: 258 LPQMTWFHDGNSLDSDDHVTYEHDGFVLVLN--GVRESDAGVYNCVAQNSEGSAESVAMI 315
L +++W + ++ +G V + ++ + ++C+ N+ + A+I
Sbjct: 132 LAEVSWQNVSVPANT--SHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAII 189
Query: 316 RINGHRAPRL 325
P++
Sbjct: 190 DPLSRMEPKV 199
Score = 103 bits (258), Expect = 2e-25
Identities = 31/212 (14%), Positives = 58/212 (27%), Gaps = 31/212 (14%)
Query: 41 TVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE----- 95
TV AP V GS+ + C + ++ +D
Sbjct: 4 TVTAPKEVYTVDV------GSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATL 57
Query: 96 ------HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMR 149
+ + V+ D+G Y C+ +++ + +
Sbjct: 58 LEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMR---IDTRILE 114
Query: 150 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIG------PQDS 203
P V++ C+ G PL +SW H LY + PQ S
Sbjct: 115 VPGTGEVQLTCQARGYPLAEVSWQNVSVPANTS-----HIRTPEGLYQVTSVLRLKPQPS 169
Query: 204 GLYRCTASNLLGEDVAEGYLTVTGAPPIFIQR 235
+ C N +++ + + R
Sbjct: 170 RNFSCMFWNAHMKELTSAIIDPLSRMEPKVPR 201
Score = 98.2 bits (244), Expect = 2e-23
Identities = 30/205 (14%), Positives = 56/205 (27%), Gaps = 32/205 (15%)
Query: 224 TVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE---- 279
TVT P V GS+ + C + ++ +D
Sbjct: 4 TVTA-PKEVYTVDV------GSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERAT 56
Query: 280 -------HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDM 332
+ + V+ D+G Y C+ +++ + +
Sbjct: 57 LLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMR---IDTRIL 113
Query: 333 RAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIG------PQD 386
P V++ C+ G PL +SW H LY + PQ
Sbjct: 114 EVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTS-----HIRTPEGLYQVTSVLRLKPQP 168
Query: 387 SGLYRCTASNLLGEDVAEGYLTVTG 411
S + C N +++ +
Sbjct: 169 SRNFSCMFWNAHMKELTSAIIDPLS 193
Score = 80.9 bits (199), Expect = 2e-17
Identities = 25/134 (18%), Positives = 50/134 (37%), Gaps = 5/134 (3%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLV 69
I VQ G+Y C+ A L V V A + I ++TC
Sbjct: 69 FHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRID-TRILEVPGTGEVQLTCQA 127
Query: 70 EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLN--GVRESDAGVYNCVAQNSEGSAES 127
G+PL +++W + ++ +G V + ++ + ++C+ N+ +
Sbjct: 128 RGYPLAEVSWQNVSVPANT--SHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELT 185
Query: 128 VAMIRINGHRAPRL 141
A+I P++
Sbjct: 186 SAIIDPLSRMEPKV 199
Score = 58.9 bits (142), Expect = 6e-10
Identities = 17/107 (15%), Positives = 27/107 (25%), Gaps = 13/107 (12%)
Query: 334 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVED------------RNHKIHRTGSLRLYN 381
GSSV + C D + + + VE+ + +
Sbjct: 14 VDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPS 73
Query: 382 IGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSAS 428
+ +DSG YRC D + V P
Sbjct: 74 VQVRDSGQYRCLVICGAAWDYKYLTVKVKASYM-RIDTRILEVPGTG 119
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 106 bits (267), Expect = 8e-27
Identities = 26/184 (14%), Positives = 54/184 (29%), Gaps = 25/184 (13%)
Query: 145 PFDMRAPAGSSVE--IPCKPDGEPLPRISWSKDEAE----------FVEDRNHKIHRTGS 192
+ G + IP + + + W + F++ +I G
Sbjct: 3 SGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGD 62
Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCL 252
L++ N+ DSG Y T + G + L + + Y S + +TC
Sbjct: 63 LKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMV----SKPMIYWECSNATLTCE 118
Query: 253 VEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESV 312
V ++ + L S ++ + + C A N +
Sbjct: 119 VLEGTDVELKLYQGKEHLRSLR---------QKTMSYQWTNLRAPFKCKAVNRVSQESEM 169
Query: 313 AMIR 316
++
Sbjct: 170 EVVN 173
Score = 72.7 bits (178), Expect = 6e-15
Identities = 17/123 (13%), Positives = 40/123 (32%), Gaps = 12/123 (9%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLV 69
L I + R+ G Y+ + G + + + + + +P+ Y S + +TC V
Sbjct: 63 LKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEM-VSKPM--IYWECSNATLTCEV 119
Query: 70 EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVA 129
++ + L S ++ + + C A N +
Sbjct: 120 LEGTDVELKLYQGKEHLRSLR---------QKTMSYQWTNLRAPFKCKAVNRVSQESEME 170
Query: 130 MIR 132
++
Sbjct: 171 VVN 173
Score = 71.5 bits (175), Expect = 2e-14
Identities = 19/174 (10%), Positives = 46/174 (26%), Gaps = 22/174 (12%)
Query: 62 TSRITCLVEGHPLPQMTWFHDGNSLDS--DDHVTYEHDGFV-------LVLNGVRESDAG 112
I + ++ W + + G L + + D+G
Sbjct: 15 NLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSG 74
Query: 113 VYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW 172
YN ++ G+ + + R +V KP M S+ + C+ +
Sbjct: 75 TYNVTVYSTNGTRILNKALDL---RILEMVSKP--MIYWECSNATLTCEVLEGTDVELKL 129
Query: 173 SKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 226
+ + + ++C A N + ++ +
Sbjct: 130 YQG--------KEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNCP 175
Score = 71.5 bits (175), Expect = 2e-14
Identities = 19/174 (10%), Positives = 46/174 (26%), Gaps = 22/174 (12%)
Query: 246 TSRITCLVEGHPLPQMTWFHDGNSLDS--DDHVTYEHDGFV-------LVLNGVRESDAG 296
I + ++ W + + G L + + D+G
Sbjct: 15 NLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSG 74
Query: 297 VYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW 356
YN ++ G+ + + R +V KP M S+ + C+ +
Sbjct: 75 TYNVTVYSTNGTRILNKALDL---RILEMVSKP--MIYWECSNATLTCEVLEGTDVELKL 129
Query: 357 SKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
+ + + ++C A N + ++ +
Sbjct: 130 YQG--------KEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNCP 175
Score = 67.7 bits (165), Expect = 4e-13
Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 13/110 (11%)
Query: 329 PFDMRAPAGSSVE--IPCKPDGEPLPRISWSKDEAE----------FVEDRNHKIHRTGS 376
+ G + IP + + + W + F++ +I G
Sbjct: 3 SGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGD 62
Query: 377 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPS 426
L++ N+ DSG Y T + G + L + V P E S
Sbjct: 63 LKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMV-SKPMIYWECS 111
Score = 33.4 bits (76), Expect = 0.16
Identities = 7/38 (18%), Positives = 10/38 (26%)
Query: 5 RSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV 42
RS + +S + C A N V
Sbjct: 137 RSLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 103 bits (260), Expect = 1e-26
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 42 VNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH--VTYEHDGF 99
+++ P+ + TT S+ S ++ G P P W DG ++ ++ + GF
Sbjct: 3 ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGF 62
Query: 100 VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 135
L ++ SD+G+Y C +NS GS S + I
Sbjct: 63 FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98
Score = 101 bits (253), Expect = 9e-26
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH--VTYEHDGFVL 285
+ P+ + TT S+ S ++ G P P W DG ++ ++ + GF L
Sbjct: 5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFL 64
Query: 286 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 319
++ SD+G+Y C +NS GS S + I
Sbjct: 65 EIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98
Score = 94.7 bits (236), Expect = 2e-23
Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 3/93 (3%)
Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLR 194
P +V D + S + K GEP P W+KD + +K+ L
Sbjct: 6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLE 65
Query: 195 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 227
++ DSGLY CT N G + LT+
Sbjct: 66 IHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98
Score = 94.7 bits (236), Expect = 2e-23
Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 3/93 (3%)
Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLR 378
P +V D + S + K GEP P W+KD + +K+ L
Sbjct: 6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLE 65
Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
++ DSGLY CT N G + LT+
Sbjct: 66 IHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98
Score = 35.3 bits (82), Expect = 0.012
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 10 LVISGVQREHGGRYSCVAGNPAG 32
L I G Y+C N AG
Sbjct: 64 LEIHKTDTSDSGLYTCTVKNSAG 86
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 103 bits (259), Expect = 1e-26
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH---VTYEHDGFV 100
PP FIQ P + + G R+ V G P P ++W+ +G ++ SDD + E
Sbjct: 4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHS 63
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
L+ VR SDAG Y CVA+N G A + +
Sbjct: 64 LIFEVVRASDAGAYACVAKNRAGEATFTVQLDV 96
Score = 103 bits (259), Expect = 1e-26
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH---VTYEHDGFV 284
PP FIQ P + + G R+ V G P P ++W+ +G ++ SDD + E
Sbjct: 4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHS 63
Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
L+ VR SDAG Y CVA+N G A + +
Sbjct: 64 LIFEVVRASDAGAYACVAKNRAGEATFTVQLDV 96
Score = 88.2 bits (219), Expect = 3e-21
Identities = 26/95 (27%), Positives = 35/95 (36%), Gaps = 4/95 (4%)
Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR----TGSL 377
PR + P +M G + K G P P +SW + D HK+ SL
Sbjct: 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSL 64
Query: 378 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGE 412
+ D+G Y C A N GE L V +
Sbjct: 65 IFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99
Score = 87.4 bits (217), Expect = 6e-21
Identities = 26/94 (27%), Positives = 34/94 (36%), Gaps = 4/94 (4%)
Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR----TGSL 193
PR + P +M G + K G P P +SW + D HK+ SL
Sbjct: 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSL 64
Query: 194 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 227
+ D+G Y C A N GE L V
Sbjct: 65 IFEVVRASDAGAYACVAKNRAGEATFTVQLDVLA 98
Score = 37.7 bits (88), Expect = 0.002
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 10 LVISGVQREHGGRYSCVAGNPAG 32
L+ V+ G Y+CVA N AG
Sbjct: 64 LIFEVVRASDAGAYACVAKNRAG 86
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 106 bits (265), Expect = 2e-26
Identities = 34/191 (17%), Positives = 59/191 (30%), Gaps = 21/191 (10%)
Query: 42 VNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFV 100
V P P G +TC WFH+G+ + +
Sbjct: 1 VPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSS-------- 52
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC 160
L + + D+G Y C Q S + + L+ G + + C
Sbjct: 53 LNIVNAKFEDSGEYKCQHQQVNESEP----VYLEVFSDWLLLQAS-AEVVMEGQPLFLRC 107
Query: 161 KPD-GEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA 219
+ ++ + KD + ++ + N +DSG Y CT + +
Sbjct: 108 HGWRNWDVYKVIYYKDGEAL-----KYWYENHNISITNATVEDSGTYYCTGKVWQLDYES 162
Query: 220 EG-YLTVTGAP 229
E +TV AP
Sbjct: 163 EPLNITVIKAP 173
Score = 101 bits (254), Expect = 5e-25
Identities = 31/188 (16%), Positives = 65/188 (34%), Gaps = 20/188 (10%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKIHRTGSLRLYN 197
P++ + P R G +V + C + W + + E SL + N
Sbjct: 5 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET-------NSSLNIVN 57
Query: 198 IGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVE-GH 256
+DSG Y+C + + + + + + + G + C
Sbjct: 58 AKFEDSGEYKCQHQQVNESEP----VYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNW 113
Query: 257 PLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR 316
+ ++ ++ DG +L ++ + + D+G Y C + + ES +
Sbjct: 114 DVYKVIYYKDGEALKYW------YENHNISITNATVEDSGTYYCTGKVWQLDYES-EPLN 166
Query: 317 INGHRAPR 324
I +APR
Sbjct: 167 ITVIKAPR 174
Score = 101 bits (254), Expect = 5e-25
Identities = 31/184 (16%), Positives = 56/184 (30%), Gaps = 21/184 (11%)
Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFVLVLN 288
P P G +TC WFH+G+ + + L +
Sbjct: 5 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSS--------LNIV 56
Query: 289 GVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPD- 347
+ D+G Y C Q S + + L+ G + + C
Sbjct: 57 NAKFEDSGEYKCQHQQVNESEP----VYLEVFSDWLLLQAS-AEVVMEGQPLFLRCHGWR 111
Query: 348 GEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG-Y 406
+ ++ + KD + ++ + N +DSG Y CT + +E
Sbjct: 112 NWDVYKVIYYKDGEAL-----KYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLN 166
Query: 407 LTVT 410
+TV
Sbjct: 167 ITVI 170
Score = 86.9 bits (215), Expect = 8e-20
Identities = 23/136 (16%), Positives = 50/136 (36%), Gaps = 11/136 (8%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRI 65
+++ L I + E G Y C +++ V + + +Q + G +
Sbjct: 49 TNSSLNIVNAKFEDSGEYKCQHQQVNES--EPVYLEVFSDWLLLQAS-AEVVMEGQPLFL 105
Query: 66 TCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 124
C + ++ ++ DG +L ++ + + D+G Y C + +
Sbjct: 106 RCHGWRNWDVYKVIYYKDGEALKYW------YENHNISITNATVEDSGTYYCTGKVWQLD 159
Query: 125 AESVAMIRINGHRAPR 140
ES + I +APR
Sbjct: 160 YES-EPLNITVIKAPR 174
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 103 bits (258), Expect = 3e-26
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 222 YLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD--HVTYE 279
+ + T + +P S T G ++R +C +G P+P +TW G L + VT
Sbjct: 7 HSSKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTT 66
Query: 280 HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
++ V+ SD G Y+ V +NSEG E+ + I
Sbjct: 67 KYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
Score = 102 bits (256), Expect = 4e-26
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Query: 40 VTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD--HVTYEHD 97
+ +P S T G ++R +C +G P+P +TW G L + VT
Sbjct: 9 SKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKY 68
Query: 98 GFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
++ V+ SD G Y+ V +NSEG E+ + I
Sbjct: 69 KSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
Score = 96.3 bits (240), Expect = 6e-24
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
Query: 136 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---S 192
A R++ KP M G S C DGEP+P ++W + H++ T +
Sbjct: 12 TLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKST 71
Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
+ ++ D G Y N G+ AE LT+
Sbjct: 72 FEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
Score = 96.3 bits (240), Expect = 6e-24
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
Query: 320 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---S 376
A R++ KP M G S C DGEP+P ++W + H++ T +
Sbjct: 12 TLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKST 71
Query: 377 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
+ ++ D G Y N G+ AE LT+
Sbjct: 72 FEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
Score = 36.9 bits (86), Expect = 0.004
Identities = 10/23 (43%), Positives = 10/23 (43%)
Query: 10 LVISGVQREHGGRYSCVAGNPAG 32
IS VQ G YS V N G
Sbjct: 72 FEISSVQASDEGNYSVVVENSEG 94
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 107 bits (268), Expect = 3e-26
Identities = 41/233 (17%), Positives = 70/233 (30%), Gaps = 66/233 (28%)
Query: 147 DMRAPAGSSVEIPCK---PDGEPLPRISWSKDEAEFVEDRNHKIHRT------------- 190
++ AG +VE+PC + P ISW K + + K +
Sbjct: 11 EVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDS 70
Query: 191 -------------------GSLRLYNIGPQDSGLYRCTASNL-----LGEDVAEGYLTVT 226
+LRL ++ PQD G Y C + G D L VT
Sbjct: 71 YKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVT 130
Query: 227 G---APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH--- 280
G + + + G+ +TC +TW+ ++ + TY+
Sbjct: 131 GHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLAN 190
Query: 281 --------------------DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVA 313
LV+ + +DAG C +G ++
Sbjct: 191 KNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADR 243
Score = 94.2 bits (233), Expect = 1e-21
Identities = 31/251 (12%), Positives = 54/251 (21%), Gaps = 71/251 (28%)
Query: 40 VTVNAPPIFIQRPVSTTYSTGSTSRITCLV---EGHPLPQMTWFHDGNSLDSDDHVTYEH 96
+TV G T + C P ++W + S +
Sbjct: 3 MTVRTTH------TEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNY 56
Query: 97 -------------------------------DGFVLVLNGVRESDAGVYNCVAQNSE--- 122
L L V D G Y C
Sbjct: 57 NWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRT 116
Query: 123 --GSAESVAMIRINGH--RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAE 178
G ++++ GH V ++ G+ + + C ++W
Sbjct: 117 EFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTF 176
Query: 179 FVEDRNHKIHR------------------------TGSLRLYNIGPQDSGLYRCTASNLL 214
F +L + D+G C +
Sbjct: 177 FENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQ 236
Query: 215 GEDVAEGYLTV 225
GE A+ T+
Sbjct: 237 GELDADRSSTI 247
Score = 94.2 bits (233), Expect = 1e-21
Identities = 31/252 (12%), Positives = 54/252 (21%), Gaps = 72/252 (28%)
Query: 223 LTVTGAPPIFIQRPVSTTYSTGSTSRITCLV---EGHPLPQMTWFHDGNSLDSDDHVTYE 279
+TV G T + C P ++W + S
Sbjct: 3 MTVRTTHT-------EVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGN 55
Query: 280 H-------------------------------DGFVLVLNGVRESDAGVYNCVAQNSE-- 306
+ L L V D G Y C
Sbjct: 56 YNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIR 115
Query: 307 ---GSAESVAMIRINGH--RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEA 361
G ++++ GH V ++ G+ + + C ++W
Sbjct: 116 TEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPT 175
Query: 362 EFVEDRNHKIHR------------------------TGSLRLYNIGPQDSGLYRCTASNL 397
F +L + D+G C +
Sbjct: 176 FFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATG 235
Query: 398 LGEDVAEGYLTV 409
GE A+ T+
Sbjct: 236 QGELDADRSSTI 247
Score = 87.7 bits (216), Expect = 2e-19
Identities = 23/152 (15%), Positives = 46/152 (30%), Gaps = 32/152 (21%)
Query: 10 LVISGVQREHGGRYSCVAGNPA-----GVYRGDLHVTVNA----PPIFIQRPVSTTYSTG 60
L ++ V + GGRY C + G+ + + V + + G
Sbjct: 92 LRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEG 151
Query: 61 STSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH-----------------------D 97
+ +TC +TW+ ++ + TY+
Sbjct: 152 NDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSG 211
Query: 98 GFVLVLNGVRESDAGVYNCVAQNSEGSAESVA 129
LV+ + +DAG C +G ++
Sbjct: 212 ARNLVIRAAKITDAGRVWCELATGQGELDADR 243
Score = 44.9 bits (105), Expect = 5e-05
Identities = 9/33 (27%), Positives = 11/33 (33%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV 42
LVI + GR C G D T+
Sbjct: 215 LVIRAAKITDAGRVWCELATGQGELDADRSSTI 247
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 101 bits (255), Expect = 6e-26
Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 2/98 (2%)
Query: 40 VTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF 99
T++ P R S G +R V+ P ++ W+H+G L + Y +
Sbjct: 3 FTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSG 62
Query: 100 V--LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 135
V L + D+G Y V N +G A A + + G
Sbjct: 63 VLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTG 100
Score = 97.8 bits (244), Expect = 2e-24
Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 3/101 (2%)
Query: 221 GYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH 280
G T+ P R S G +R V+ P ++ W+H+G L + Y +
Sbjct: 1 GPFTLD-HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTN 59
Query: 281 DGFV--LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 319
V L + D+G Y V N +G A A + + G
Sbjct: 60 TSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTG 100
Score = 92.4 bits (230), Expect = 1e-22
Identities = 24/95 (25%), Positives = 35/95 (36%), Gaps = 3/95 (3%)
Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SL 193
APR+ ++ R P G + +P + W + E E T +L
Sbjct: 7 HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTL 66
Query: 194 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGA 228
+ + DSG YR +N GE L VTG
Sbjct: 67 EILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101
Score = 91.6 bits (228), Expect = 3e-22
Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 3/94 (3%)
Query: 321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SL 377
APR+ ++ R P G + +P + W + E E T +L
Sbjct: 7 HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTL 66
Query: 378 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
+ + DSG YR +N GE L VTG
Sbjct: 67 EILDCHTDDSGTYRAVCTNYKGEASDYATLDVTG 100
Score = 34.6 bits (80), Expect = 0.024
Identities = 7/23 (30%), Positives = 8/23 (34%)
Query: 10 LVISGVQREHGGRYSCVAGNPAG 32
L I + G Y V N G
Sbjct: 66 LEILDCHTDDSGTYRAVCTNYKG 88
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 101 bits (254), Expect = 8e-26
Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 3/101 (2%)
Query: 226 TGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD---G 282
+G P F+Q P T G R+ C V G P P ++W DG + D
Sbjct: 6 SGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGV 65
Query: 283 FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAP 323
L++ V DAG+Y C+A N G + + +
Sbjct: 66 HSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESG 106
Score = 100 bits (251), Expect = 2e-25
Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 3/102 (2%)
Query: 41 TVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD--- 97
+ P F+Q P T G R+ C V G P P ++W DG + D
Sbjct: 5 SSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENG 64
Query: 98 GFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAP 139
L++ V DAG+Y C+A N G + + +
Sbjct: 65 VHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESG 106
Score = 89.7 bits (223), Expect = 1e-21
Identities = 29/111 (26%), Positives = 43/111 (38%), Gaps = 11/111 (9%)
Query: 123 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED 182
GS+ S P + P D+ G + CK G P P +SW D D
Sbjct: 1 GSSGSSGF-------RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPD 53
Query: 183 RNHKIHR----TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAP 229
HK+ SL + + +D+G+Y C A+N G++ L V
Sbjct: 54 SAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKE 104
Score = 89.0 bits (221), Expect = 3e-21
Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 11/116 (9%)
Query: 307 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED 366
GS+ S P + P D+ G + CK G P P +SW D D
Sbjct: 1 GSSGSSGF-------RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPD 53
Query: 367 RNHKIHR----TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPA 418
HK+ SL + + +D+G+Y C A+N G++ L V + S +
Sbjct: 54 SAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGPSS 109
Score = 40.0 bits (94), Expect = 3e-04
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP 46
L+I V G Y+C+A N AG L + V A
Sbjct: 68 LIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKE 104
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 101 bits (253), Expect = 1e-25
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 227 GAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG--FV 284
G+PP F++ P +G+ + + C+V G P P + W G L + + +++ DG
Sbjct: 11 GSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHG 70
Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
L+L +DAGVY C A+N+ G A + A + +
Sbjct: 71 LLLTAALPTDAGVYVCRARNAAGEAYAAAAVTV 103
Score = 100 bits (251), Expect = 2e-25
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 39 HVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG 98
+PP F++ P +G+ + + C+V G P P + W G L + + +++ DG
Sbjct: 7 SGDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADG 66
Query: 99 --FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
L+L +DAGVY C A+N+ G A + A + +
Sbjct: 67 AEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTV 103
Score = 95.5 bits (238), Expect = 1e-23
Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 3/95 (3%)
Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLR 194
P + P +R +G+ E+ C GEP P + W K + G L
Sbjct: 13 PPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLL 72
Query: 195 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAP 229
L P D+G+Y C A N GE A +TV P
Sbjct: 73 LTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107
Score = 92.8 bits (231), Expect = 1e-22
Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLR 378
P + P +R +G+ E+ C GEP P + W K + G L
Sbjct: 13 PPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLL 72
Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
L P D+G+Y C A N GE A +TV
Sbjct: 73 LTAALPTDAGVYVCRARNAAGEAYAAAAVTV 103
Score = 40.4 bits (95), Expect = 2e-04
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP 46
L+++ G Y C A N AG VTV PP
Sbjct: 71 LLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 100 bits (251), Expect = 2e-25
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 1/94 (1%)
Query: 41 TVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV 100
+ P F G + C V G P+P++TW +G + T E
Sbjct: 7 GMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARS-TCEAGVAE 65
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 134
L + D G Y C+A+N+ G A + ++
Sbjct: 66 LHIQDALPEDHGTYTCLAENALGQVSCSAWVTVH 99
Score = 97.0 bits (242), Expect = 3e-24
Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 1/91 (1%)
Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVL 287
P F G + C V G P+P++TW +G + T E L +
Sbjct: 10 VAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARS-TCEAGVAELHI 68
Query: 288 NGVRESDAGVYNCVAQNSEGSAESVAMIRIN 318
D G Y C+A+N+ G A + ++
Sbjct: 69 QDALPEDHGTYTCLAENALGQVSCSAWVTVH 99
Score = 92.8 bits (231), Expect = 8e-23
Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 5/103 (4%)
Query: 123 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED 182
GS+ S M AP D G + C G P+PRI+W +
Sbjct: 1 GSSGSSGM-----EVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYA 55
Query: 183 RNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
R+ L + + P+D G Y C A N LG+ ++TV
Sbjct: 56 RSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 92.8 bits (231), Expect = 8e-23
Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 5/103 (4%)
Query: 307 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED 366
GS+ S M AP D G + C G P+PRI+W +
Sbjct: 1 GSSGSSGM-----EVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYA 55
Query: 367 RNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
R+ L + + P+D G Y C A N LG+ ++TV
Sbjct: 56 RSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 37.7 bits (88), Expect = 0.002
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVN 43
L I E G Y+C+A N G VTV+
Sbjct: 66 LHIQDALPEDHGTYTCLAENALGQVSCSAWVTVH 99
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 102 bits (256), Expect = 5e-25
Identities = 31/176 (17%), Positives = 54/176 (30%), Gaps = 10/176 (5%)
Query: 150 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCT 209
A G SV + C G P SW + + T +L + + + Y CT
Sbjct: 13 AQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCT 72
Query: 210 ASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGH---PLPQMTWFHD 266
A+ + + + + P + +S G + C V ++
Sbjct: 73 ATCESRKLEKGIQVEIY-SFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKG 131
Query: 267 G------NSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIR 316
L+ D + E + V E V C A+ +SV +R
Sbjct: 132 DHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVR 187
Score = 88.7 bits (219), Expect = 3e-20
Identities = 43/187 (22%), Positives = 66/187 (35%), Gaps = 20/187 (10%)
Query: 60 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 119
G + +TC G P +W +S + VT E L +N V + Y C A
Sbjct: 16 GDSVSLTCSTTGCESPFFSWRTQIDSP-LNGKVTNEGTTSTLTMNPVSFGNEHSYLCTAT 74
Query: 120 NSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK-PDGEPLPR--ISWSKDE 176
E I++ + P+ AG + + C D P R I K +
Sbjct: 75 CESRKLE--KGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGD 132
Query: 177 -----AEFVEDRNHKIHRTGSLRL-YNIGPQDSG-LYRCTASNLLGEDVAEG-------Y 222
EF+ED + K T SL + + +D G + C A + E +
Sbjct: 133 HLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKE 192
Query: 223 LTVTGAP 229
L V +P
Sbjct: 193 LQVYISP 199
Score = 88.7 bits (219), Expect = 4e-20
Identities = 40/167 (23%), Positives = 61/167 (36%), Gaps = 13/167 (7%)
Query: 244 GSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 303
G + +TC G P +W +S + VT E L +N V + Y C A
Sbjct: 16 GDSVSLTCSTTGCESPFFSWRTQIDSP-LNGKVTNEGTTSTLTMNPVSFGNEHSYLCTAT 74
Query: 304 NSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK-PDGEPLPR--ISWSKDE 360
E I++ + P+ AG + + C D P R I K +
Sbjct: 75 CESRKLE--KGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGD 132
Query: 361 -----AEFVEDRNHKIHRTGSLRL-YNIGPQDSG-LYRCTASNLLGE 400
EF+ED + K T SL + + +D G + C A + E
Sbjct: 133 HLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE 179
Score = 80.2 bits (197), Expect = 4e-17
Identities = 22/141 (15%), Positives = 44/141 (31%), Gaps = 9/141 (6%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTG 60
+ +++ L ++ V + Y C A + + V + + P + +S G
Sbjct: 47 VTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAG 106
Query: 61 STSRITCLVEGH---PLPQMTWFHDG------NSLDSDDHVTYEHDGFVLVLNGVRESDA 111
+ C V ++ L+ D + E + V E
Sbjct: 107 KPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIG 166
Query: 112 GVYNCVAQNSEGSAESVAMIR 132
V C A+ +SV +R
Sbjct: 167 KVLVCRAKLHIDEMDSVPTVR 187
Score = 62.1 bits (150), Expect = 5e-11
Identities = 15/86 (17%), Positives = 26/86 (30%)
Query: 334 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCT 393
A G SV + C G P SW + + T +L + + + Y CT
Sbjct: 13 AQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCT 72
Query: 394 ASNLLGEDVAEGYLTVTGENSVEPAP 419
A+ + + +
Sbjct: 73 ATCESRKLEKGIQVEIYSFPKDPEIH 98
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 99.5 bits (248), Expect = 6e-25
Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 2/107 (1%)
Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFV-EDRNHKIHRTGSLRLY 196
P + P + + + C G P+P I W KD +D K G L++
Sbjct: 8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIR 67
Query: 197 NIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYST 243
D+G Y C AS GE Y+ V + +Q P T +
Sbjct: 68 YAKLGDTGRYTCIASTPSGEATWSAYIEVQE-FGVPVQPPRPTDPNL 113
Score = 99.5 bits (248), Expect = 7e-25
Identities = 29/112 (25%), Positives = 48/112 (42%)
Query: 43 NAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLV 102
+ PP+ Q PV+ T + T ++C+ G P+P + W DG + + D + + VL
Sbjct: 6 SGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQ 65
Query: 103 LNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGS 154
+ + D G Y C+A G A A I + P +P D +
Sbjct: 66 IRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDPNLIPSA 117
Score = 99.1 bits (247), Expect = 1e-24
Identities = 29/113 (25%), Positives = 48/113 (42%)
Query: 226 TGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVL 285
+ PP+ Q PV+ T + T ++C+ G P+P + W DG + + D + + VL
Sbjct: 5 SSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVL 64
Query: 286 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGS 338
+ + D G Y C+A G A A I + P +P D +
Sbjct: 65 QIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDPNLIPSA 117
Score = 96.4 bits (240), Expect = 9e-24
Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 7/112 (6%)
Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFV-EDRNHKIHRTGSLRLY 380
P + P + + + C G P+P I W KD +D K G L++
Sbjct: 8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIR 67
Query: 381 NIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSV 432
D+G Y C AS GE Y+ V+ + P + P++
Sbjct: 68 YAKLGDTGRYTCIASTPSGEATWSAYIE------VQEFGVPVQPPRPTDPNL 113
Score = 52.1 bits (125), Expect = 3e-08
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYST 59
L I + GRY+C+A P+G ++ V + +Q P T +
Sbjct: 64 LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDPNL 113
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 103 bits (258), Expect = 1e-24
Identities = 40/268 (14%), Positives = 74/268 (27%), Gaps = 61/268 (22%)
Query: 44 APPIFIQRPVSTTYSTGSTSRITCLV---EGHPLPQMTWFHDGNSLDSDDHVTY------ 94
P G + + C+V E + ++ W + D+ ++V +
Sbjct: 4 GLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLS 63
Query: 95 ----------------EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRA 138
H+ L+L V+++D G+Y C + S + +
Sbjct: 64 VPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELW---- 119
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPR---ISWSKDEAEF---------------- 179
L +P D+R G + ++ C R ++W
Sbjct: 120 -VLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSG 178
Query: 180 -----------VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGA 228
V+ GS++L + D G+Y C+ E L V
Sbjct: 179 KFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQD 238
Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGH 256
P T G + H
Sbjct: 239 EFQRTISPTPPT-DKGQQGILNGNQHHH 265
Score = 98.8 bits (245), Expect = 5e-23
Identities = 38/266 (14%), Positives = 76/266 (28%), Gaps = 65/266 (24%)
Query: 228 APPIFIQRPVSTTYSTGSTSRITCLV---EGHPLPQMTWFHDGNSLDSDDHVTY------ 278
P G + + C+V E + ++ W + D+ ++V +
Sbjct: 4 GLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLS 63
Query: 279 ----------------EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRA 322
H+ L+L V+++D G+Y C + S + +
Sbjct: 64 VPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELW---- 119
Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPR---ISWSKDEAEF---------------- 363
L +P D+R G + ++ C R ++W
Sbjct: 120 -VLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSG 178
Query: 364 -----------VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGE 412
V+ GS++L + D G+Y C+ E L V
Sbjct: 179 KFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHV--- 235
Query: 413 NSVEPAPHTSREPSASKPSVADDTIH 438
V+ + P+ ++
Sbjct: 236 --VQDEFQRTISPTPPTDKGQQGILN 259
Score = 76.8 bits (188), Expect = 1e-15
Identities = 24/163 (14%), Positives = 48/163 (29%), Gaps = 32/163 (19%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLV 69
L++ VQ+ G Y+C V + P + P G T+++ C +
Sbjct: 86 LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLP---EEPRDLRVRVGDTTQMRCSI 142
Query: 70 EGHPLP---QMTWFHDGNSLDSDDHVTYEHDG--------------------------FV 100
+ ++ W S ++ V
Sbjct: 143 QSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGS 202
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVV 143
+ L V+ESD G+Y C + + ++ + R +
Sbjct: 203 IKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQRTIS 245
Score = 44.5 bits (104), Expect = 7e-05
Identities = 10/71 (14%), Positives = 19/71 (26%)
Query: 2 DDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGS 61
D R+ + + V+ G Y+C R + + V + G
Sbjct: 195 DISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQRTISPTPPTDKGQ 254
Query: 62 TSRITCLVEGH 72
+ H
Sbjct: 255 QGILNGNQHHH 265
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 100 bits (250), Expect = 2e-24
Identities = 31/187 (16%), Positives = 63/187 (33%), Gaps = 23/187 (12%)
Query: 44 APP--IFIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFV 100
APP + P + +TC P + WFH+GN + + +Y
Sbjct: 1 APPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFK--- 57
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC 160
+D+G Y C + S + + ++ P + G ++ + C
Sbjct: 58 -----ANNNDSGEYTCQTGQTSLSDP----VHLTVLFEWLVLQTP-HLEFQEGETIMLRC 107
Query: 161 K-PDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA 219
+PL ++++ ++ H + + SG Y CT + +
Sbjct: 108 HSWKDKPLVKVTFFQNGKSQKFS-----HLDPTFSIPQANHSHSGDYHCTGNIGYTLFSS 162
Query: 220 EG-YLTV 225
+ +TV
Sbjct: 163 KPVTITV 169
Score = 100 bits (250), Expect = 2e-24
Identities = 31/187 (16%), Positives = 63/187 (33%), Gaps = 23/187 (12%)
Query: 228 APP--IFIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFV 284
APP + P + +TC P + WFH+GN + + +Y
Sbjct: 1 APPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFK--- 57
Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC 344
+D+G Y C + S + + ++ P + G ++ + C
Sbjct: 58 -----ANNNDSGEYTCQTGQTSLSDP----VHLTVLFEWLVLQTP-HLEFQEGETIMLRC 107
Query: 345 K-PDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVA 403
+PL ++++ ++ H + + SG Y CT + +
Sbjct: 108 HSWKDKPLVKVTFFQNGKSQKFS-----HLDPTFSIPQANHSHSGDYHCTGNIGYTLFSS 162
Query: 404 EG-YLTV 409
+ +TV
Sbjct: 163 KPVTITV 169
Score = 99.5 bits (248), Expect = 3e-24
Identities = 34/176 (19%), Positives = 54/176 (30%), Gaps = 21/176 (11%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKIHR-TGSLRLY 196
L ++P + SV + C+ P I W + + I T +
Sbjct: 5 AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHN--------GNLIPTHTQPSYRF 56
Query: 197 NIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVE-G 255
DSG Y C D +LTV + + + G T + C
Sbjct: 57 KANNNDSGEYTCQTGQTSLSDPV--HLTVLFEWLVL--QTPHLEFQEGETIMLRCHSWKD 112
Query: 256 HPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES 311
PL ++T+F +G S H + S +G Y+C S
Sbjct: 113 KPLVKVTFFQNGKSQKFS------HLDPTFSIPQANHSHSGDYHCTGNIGYTLFSS 162
Score = 87.6 bits (217), Expect = 3e-20
Identities = 24/125 (19%), Positives = 40/125 (32%), Gaps = 10/125 (8%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTS 63
+ G Y+C G + +H+TV + +Q P + G T
Sbjct: 47 PTHTQPSYRFKANNNDSGEYTCQTGQTSL--SDPVHLTVLFEWLVLQTP-HLEFQEGETI 103
Query: 64 RITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE 122
+ C PL ++T+F +G S H + S +G Y+C
Sbjct: 104 MLRCHSWKDKPLVKVTFFQNGKSQKFS------HLDPTFSIPQANHSHSGDYHCTGNIGY 157
Query: 123 GSAES 127
S
Sbjct: 158 TLFSS 162
Score = 41.0 bits (96), Expect = 5e-04
Identities = 7/42 (16%), Positives = 11/42 (26%), Gaps = 1/42 (2%)
Query: 2 DDRRSSTELVISGVQREHGGRYSCVAGNPAGVYR-GDLHVTV 42
I H G Y C ++ + +TV
Sbjct: 128 KFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A
{Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 108 bits (270), Expect = 2e-24
Identities = 24/115 (20%), Positives = 49/115 (42%), Gaps = 16/115 (13%)
Query: 515 EDLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAVSLD 574
+D S + F ++ + GV+ L+ F PA R N++ + L
Sbjct: 369 QDYSY-EQFLFNTSMLVDYGVEALVDAFSRQPAGRIGGGRNIDHHI------------LH 415
Query: 575 LAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHP 629
+A I+ R + +N +R+ G+ +F++L ++ + +L+ LYG
Sbjct: 416 VAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQEL---TGEKEMAAELEELYGDI 467
Score = 100 bits (251), Expect = 4e-22
Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
Query: 792 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYEN---PSTFKP-AQLTQI 847
++ + G +LE G +M + + G+ STF +
Sbjct: 469 ALEFYPGLLLEKCHPNSIFGESMIEMGAPFSLKGLLGNPICSPEYWKASTFGGEVGFNLV 528
Query: 848 KQASLARVICDSGDRLTEV 866
K A+L +++C + V
Sbjct: 529 KTATLKKLVCLNTKTCPYV 547
Score = 55.4 bits (133), Expect = 6e-08
Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 718 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPF 759
++ + G +LE G +M + + G +P
Sbjct: 469 ALEFYPGLLLEKCHPNSIFGESMIEMGAPFSLKGLLG--NPI 508
Score = 31.2 bits (70), Expect = 1.8
Identities = 6/22 (27%), Positives = 7/22 (31%), Gaps = 1/22 (4%)
Query: 879 TPDPV-ITHMVMQWGQFLDHDL 899
PDP M + Q H
Sbjct: 157 IPDPQGTNLMFAFFAQHFTHQF 178
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 96.2 bits (240), Expect = 6e-24
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 3/95 (3%)
Query: 44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH---VTYEHDGFV 100
APP F + + G ++ V+G P P ++W + + D E
Sbjct: 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 135
L + DAG Y C A N G+ + A + + G
Sbjct: 64 LRILAAERGDAGFYTCKAVNEYGARQCEARLEVRG 98
Score = 96.2 bits (240), Expect = 6e-24
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 3/95 (3%)
Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH---VTYEHDGFV 284
APP F + + G ++ V+G P P ++W + + D E
Sbjct: 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63
Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 319
L + DAG Y C A N G+ + A + + G
Sbjct: 64 LRILAAERGDAGFYTCKAVNEYGARQCEARLEVRG 98
Score = 91.2 bits (227), Expect = 3e-22
Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 4/96 (4%)
Query: 321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG----S 376
P V D G V + + GEP P +SW ++ D+
Sbjct: 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63
Query: 377 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGE 412
LR+ D+G Y C A N G E L V GE
Sbjct: 64 LRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99
Score = 89.3 bits (222), Expect = 2e-21
Identities = 25/95 (26%), Positives = 33/95 (34%), Gaps = 4/95 (4%)
Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG----S 192
P V D G V + + GEP P +SW ++ D+
Sbjct: 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63
Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 227
LR+ D+G Y C A N G E L V G
Sbjct: 64 LRILAAERGDAGFYTCKAVNEYGARQCEARLEVRG 98
Score = 37.6 bits (88), Expect = 0.002
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 7/39 (17%)
Query: 1 TDDRRSSTE-------LVISGVQREHGGRYSCVAGNPAG 32
D RR + E L I +R G Y+C A N G
Sbjct: 48 PDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYG 86
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 96.3 bits (240), Expect = 9e-24
Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 4/108 (3%)
Query: 32 GVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSD-D 90
G + P+FI +P S G + ++ C + P P++ W + + + D
Sbjct: 2 GHHHHHHSHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTD 61
Query: 91 HVTYEHDG---FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 135
++ D L++ V + DAG Y A N G + +
Sbjct: 62 RISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTA 109
Score = 94.4 bits (235), Expect = 3e-23
Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 5/101 (4%)
Query: 136 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR-----T 190
RAP + KP + G SV++ C+ P P++ W ++ + +
Sbjct: 13 KRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGR 72
Query: 191 GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPI 231
+L + ++ +D+G Y +A N G L VT P
Sbjct: 73 VTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQ 113
Score = 94.0 bits (234), Expect = 4e-23
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 4/96 (4%)
Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSD-DHVTYEHDG---F 283
P+FI +P S G + ++ C + P P++ W + + + D ++ D
Sbjct: 14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRV 73
Query: 284 VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 319
L++ V + DAG Y A N G + +
Sbjct: 74 TLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTA 109
Score = 90.5 bits (225), Expect = 9e-22
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Query: 320 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR-----T 374
RAP + KP + G SV++ C+ P P++ W ++ + +
Sbjct: 13 KRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGR 72
Query: 375 GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
+L + ++ +D+G Y +A N G L VT
Sbjct: 73 VTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTA 109
Score = 43.2 bits (102), Expect = 3e-05
Identities = 14/50 (28%), Positives = 20/50 (40%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQ 50
D L+I V ++ G Y+ A N AGV + + V A P
Sbjct: 66 YQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTL 115
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 95.1 bits (237), Expect = 1e-23
Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 4/97 (4%)
Query: 227 GAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD----HVTYEHDG 282
G PP P + G + C G P P++TW G + S + H+ D
Sbjct: 3 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL 62
Query: 283 FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 319
L++ V++ D G+Y N GS + I I
Sbjct: 63 TTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 99
Score = 93.1 bits (232), Expect = 6e-23
Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 4/95 (4%)
Query: 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD----HVTYEHDGFV 100
PP P + G + C G P P++TW G + S + H+ D
Sbjct: 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTT 64
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 135
L++ V++ D G+Y N GS + I I
Sbjct: 65 LIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 99
Score = 92.0 bits (229), Expect = 1e-22
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 5/95 (5%)
Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH-----RTGS 192
P++ P D+ G + + C GEP P ++WS + + H +
Sbjct: 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTT 64
Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 227
L + ++ QD GLY + N G D A + +
Sbjct: 65 LIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 99
Score = 92.0 bits (229), Expect = 1e-22
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 5/95 (5%)
Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH-----RTGS 376
P++ P D+ G + + C GEP P ++WS + + H +
Sbjct: 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTT 64
Query: 377 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
L + ++ QD GLY + N G D A + +
Sbjct: 65 LIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 99
Score = 41.9 bits (99), Expect = 5e-05
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 7 STELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNA 44
T L+I VQ++ GG Y+ GN G +++ + +
Sbjct: 62 LTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 99
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 94.8 bits (236), Expect = 2e-23
Identities = 27/97 (27%), Positives = 45/97 (46%)
Query: 224 TVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF 283
+ + PPI +Q P + T + T+ + C G PLP ++W +G + D +
Sbjct: 3 SGSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQG 62
Query: 284 VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGH 320
L + +R SD G Y CVA +S G A++ +
Sbjct: 63 TLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTES 99
Score = 94.8 bits (236), Expect = 2e-23
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Query: 136 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH-KIHRTGSLR 194
P ++ P + + + CK G+PLP ISW K+ F I G+L+
Sbjct: 6 SGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQ 65
Query: 195 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGA 228
+ N+ D+G Y C A++ GE L VT +
Sbjct: 66 IKNLRISDTGTYTCVATSSSGETSWSAVLDVTES 99
Score = 94.4 bits (235), Expect = 2e-23
Identities = 27/95 (28%), Positives = 44/95 (46%)
Query: 42 VNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVL 101
+ PPI +Q P + T + T+ + C G PLP ++W +G + D + L
Sbjct: 5 SSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTL 64
Query: 102 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGH 136
+ +R SD G Y CVA +S G A++ +
Sbjct: 65 QIKNLRISDTGTYTCVATSSSGETSWSAVLDVTES 99
Score = 93.2 bits (232), Expect = 7e-23
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Query: 320 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH-KIHRTGSLR 378
P ++ P + + + CK G+PLP ISW K+ F I G+L+
Sbjct: 6 SGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQ 65
Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
+ N+ D+G Y C A++ GE L VT
Sbjct: 66 IKNLRISDTGTYTCVATSSSGETSWSAVLDVTE 98
Score = 40.1 bits (94), Expect = 3e-04
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 2 DDRRSSTE---LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV 42
D R + E L I ++ G Y+CVA + +G + V
Sbjct: 53 DPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDV 96
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 95.1 bits (237), Expect = 2e-23
Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 2/99 (2%)
Query: 43 NAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV--TYEHDGFV 100
++ P IQ P G + + V G TW + +H+ +G
Sbjct: 5 SSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSK 64
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAP 139
L + R+ G Y + +N GS ++ + + P
Sbjct: 65 LTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDP 103
Score = 94.3 bits (235), Expect = 3e-23
Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 2/98 (2%)
Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV--TYEHDGFVL 285
+ P IQ P G + + V G TW + +H+ +G L
Sbjct: 6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKL 65
Query: 286 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAP 323
+ R+ G Y + +N GS ++ + + P
Sbjct: 66 TILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDP 103
Score = 94.3 bits (235), Expect = 4e-23
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 3/95 (3%)
Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLR 194
P+++ P D + AG SVE+ K G +W K + E + K+ + L
Sbjct: 7 GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLT 66
Query: 195 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAP 229
+ + G Y N LG A+ LTV P
Sbjct: 67 ILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKP 101
Score = 91.6 bits (228), Expect = 3e-22
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 3/93 (3%)
Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLR 378
P+++ P D + AG SVE+ K G +W K + E + K+ + L
Sbjct: 7 GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLT 66
Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
+ + G Y N LG A+ LTV
Sbjct: 67 ILAARQEHCGCYTLLVENKLGSRQAQVNLTVVD 99
Score = 45.8 bits (109), Expect = 4e-06
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 7 STELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP 46
++L I ++EH G Y+ + N G + +++TV P
Sbjct: 62 GSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKP 101
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 94.3 bits (235), Expect = 3e-23
Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 4/104 (3%)
Query: 224 TVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH---VTYEH 280
+ + P F + G TC V G+P P++ WF DG + + +
Sbjct: 3 SGSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDL 62
Query: 281 DGFV-LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAP 323
DG L D G Y +A N +G + + +
Sbjct: 63 DGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSG 106
Score = 93.2 bits (232), Expect = 9e-23
Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 4/101 (3%)
Query: 43 NAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH---VTYEHDGF 99
+ P F + G TC V G+P P++ WF DG + + + DG
Sbjct: 6 SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGT 65
Query: 100 V-LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAP 139
L D G Y +A N +G + + +
Sbjct: 66 CSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSG 106
Score = 86.3 bits (214), Expect = 2e-20
Identities = 26/99 (26%), Positives = 34/99 (34%), Gaps = 5/99 (5%)
Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR-----TG 191
AP +K + G V C+ G P P+I W KD + +H + T
Sbjct: 7 GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTC 66
Query: 192 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPP 230
SL D G Y A+N G G L V
Sbjct: 67 SLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNS 105
Score = 85.1 bits (211), Expect = 5e-20
Identities = 28/99 (28%), Positives = 36/99 (36%), Gaps = 5/99 (5%)
Query: 321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR-----TG 375
AP +K + G V C+ G P P+I W KD + +H + T
Sbjct: 7 GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTC 66
Query: 376 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENS 414
SL D G Y A+N G G L V NS
Sbjct: 67 SLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNS 105
Score = 36.6 bits (85), Expect = 0.006
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP 46
L + + G Y+ +A NP G + V A
Sbjct: 68 LHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVN 104
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 97.6 bits (242), Expect = 4e-23
Identities = 26/192 (13%), Positives = 54/192 (28%), Gaps = 19/192 (9%)
Query: 147 DMRAPAGSSVEIPCKPDGEPLPRISWSK---DEAEFVEDRNHKIHRTGSLRLYNIGPQDS 203
+ +V IPC +S ++ + + + +
Sbjct: 18 YITENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYA 76
Query: 204 GLYRCTASNLLGEDVAEGYLTVTGAPPIF---IQRPVSTTYSTGSTSRITCLVEGHPLP- 259
G+ C A + Y+ V I+ + S G + C
Sbjct: 77 GMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVG 136
Query: 260 -QMTWFHDGNSLDSDDHVTYEHDGF----------VLVLNGVRESDAGVYNCVAQNSEGS 308
W + + V + L ++GV SD G+Y C A + +
Sbjct: 137 IDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMT 196
Query: 309 AESVAMIRINGH 320
++ +R++
Sbjct: 197 KKNSTFVRVHED 208
Score = 93.3 bits (231), Expect = 1e-21
Identities = 31/209 (14%), Positives = 66/209 (31%), Gaps = 21/209 (10%)
Query: 39 HVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTW---FHDGNSLDSDDHVTYE 95
+ + V T + T I CL ++ + + + + ++++
Sbjct: 4 SPFIASVSDQHG-VVYITENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWD 61
Query: 96 HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVV--KPFDMRAPAG 153
+ S AG+ C A+ ++ S +S+ I + VV + G
Sbjct: 62 SKK-GFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVG 120
Query: 154 SSVEIPCKPDGEPLPR--ISWSKDEAEFVEDR-----------NHKIHRTGSLRLYNIGP 200
+ + C E +W ++ + + +L + +
Sbjct: 121 EKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTR 180
Query: 201 QDSGLYRCTASNLLGEDVAEGYLTVTGAP 229
D GLY C AS+ L ++ V P
Sbjct: 181 SDQGLYTCAASSGLMTKKNSTFVRVHEDP 209
Score = 90.2 bits (223), Expect = 1e-20
Identities = 30/199 (15%), Positives = 63/199 (31%), Gaps = 20/199 (10%)
Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTW---FHDGNSLDSDDHVTYEHDGFVL 285
V T + T I CL ++ + + + + ++++
Sbjct: 9 SVSDQHGVVYITENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKK-GF 66
Query: 286 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVV--KPFDMRAPAGSSVEIP 343
+ S AG+ C A+ ++ S +S+ I + VV + G + +
Sbjct: 67 TIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLN 126
Query: 344 CKPDGEPLPR--ISWSKDEAEFVEDR-----------NHKIHRTGSLRLYNIGPQDSGLY 390
C E +W ++ + + +L + + D GLY
Sbjct: 127 CTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLY 186
Query: 391 RCTASNLLGEDVAEGYLTV 409
C AS+ L ++ V
Sbjct: 187 TCAASSGLMTKKNSTFVRV 205
Score = 82.1 bits (202), Expect = 9e-18
Identities = 22/147 (14%), Positives = 43/147 (29%), Gaps = 16/147 (10%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNA----PPIFIQRPVSTTYSTGS 61
S I + G C A Y+ +++ V + + S G
Sbjct: 62 SKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGE 121
Query: 62 TSRITCLVEGHPLP--QMTWFHDGNSLDSDDHVTYEHDGF----------VLVLNGVRES 109
+ C W + + V + L ++GV S
Sbjct: 122 KLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRS 181
Query: 110 DAGVYNCVAQNSEGSAESVAMIRINGH 136
D G+Y C A + + ++ +R++
Sbjct: 182 DQGLYTCAASSGLMTKKNSTFVRVHED 208
Score = 47.5 bits (112), Expect = 5e-06
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPI 47
++ ++ + L I GV R G Y+C A + + V V+ PI
Sbjct: 164 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPI 210
Score = 44.4 bits (104), Expect = 5e-05
Identities = 10/90 (11%), Positives = 23/90 (25%), Gaps = 4/90 (4%)
Query: 331 DMRAPAGSSVEIPCKPDGEPLPRISWSK---DEAEFVEDRNHKIHRTGSLRLYNIGPQDS 387
+ +V IPC +S ++ + + + +
Sbjct: 18 YITENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYA 76
Query: 388 GLYRCTASNLLGEDVAEGYLTVTGENSVEP 417
G+ C A + Y+ V +
Sbjct: 77 GMVFCEAKINDESYQSIMYIVVVVGYRIYD 106
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 93.5 bits (233), Expect = 4e-23
Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 3/94 (3%)
Query: 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG---FVL 101
P +R S T GS + V G P P+ W+ +G ++ D + + L
Sbjct: 5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 64
Query: 102 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 135
V+ V D+ A N G S A + +
Sbjct: 65 VIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 98
Score = 93.5 bits (233), Expect = 4e-23
Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 3/94 (3%)
Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG---FVL 285
P +R S T GS + V G P P+ W+ +G ++ D + + L
Sbjct: 5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 64
Query: 286 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 319
V+ V D+ A N G S A + +
Sbjct: 65 VIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 98
Score = 88.5 bits (220), Expect = 3e-21
Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 4/96 (4%)
Query: 321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG----S 376
AP++ + GS + G+P P W K+ + +
Sbjct: 4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 63
Query: 377 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGE 412
L + ++ +DS A N+ GE + +L V +
Sbjct: 64 LVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99
Score = 87.3 bits (217), Expect = 8e-21
Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 4/95 (4%)
Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG----S 192
AP++ + GS + G+P P W K+ + +
Sbjct: 4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 63
Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 227
L + ++ +DS A N+ GE + +L V
Sbjct: 64 LVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 98
Score = 34.6 bits (80), Expect = 0.022
Identities = 10/24 (41%), Positives = 10/24 (41%)
Query: 9 ELVISGVQREHGGRYSCVAGNPAG 32
ELVI V E A N AG
Sbjct: 63 ELVIRDVTGEDSASIMVKAINIAG 86
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 94.2 bits (234), Expect = 2e-22
Identities = 27/185 (14%), Positives = 56/185 (30%), Gaps = 21/185 (11%)
Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMT-WFHDGNSLDSDDHVTYEHDGFVLVL 287
+ P + + + C P T WFH+ + + S +
Sbjct: 7 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASS--------YFI 58
Query: 288 NGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPD 347
+ +D+G Y C S S +++ H L+ P + + + C
Sbjct: 59 DAATVNDSGEYRCQTNLSTLSDP----VQLEVHIGWLLLQAPRWV-FKEEDPIHLRCHSW 113
Query: 348 -GEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV-AEG 405
L ++++ ++ + H + +DSG Y C
Sbjct: 114 KNTALHKVTYLQNGKDRKYF-----HHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETV 168
Query: 406 YLTVT 410
+T+T
Sbjct: 169 NITIT 173
Score = 92.2 bits (229), Expect = 1e-21
Identities = 28/175 (16%), Positives = 49/175 (28%), Gaps = 19/175 (10%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKIHRTGSLRLYN 197
+ ++P SV + C+ P W +E+ S +
Sbjct: 8 AVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ-------ASSYFIDA 60
Query: 198 IGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLV-EGH 256
DSG YRC + D L V + + + + C +
Sbjct: 61 ATVNDSGEYRCQTNLSTLSDPV--QLEVHIGWLLL--QAPRWVFKEEDPIHLRCHSWKNT 116
Query: 257 PLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAES 311
L ++T+ +G Y H + D+G Y C + S
Sbjct: 117 ALHKVTYLQNGKDR------KYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSS 165
Score = 85.7 bits (212), Expect = 2e-19
Identities = 18/125 (14%), Positives = 35/125 (28%), Gaps = 10/125 (8%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTS 63
++ I G Y C + + V+ + +Q P +
Sbjct: 50 SSQASSYFIDAATVNDSGEYRCQTNL--STLSDPVQLEVHIGWLLLQAP-RWVFKEEDPI 106
Query: 64 RITCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE 122
+ C + L ++T+ +G Y H + D+G Y C
Sbjct: 107 HLRCHSWKNTALHKVTYLQNGKDR------KYFHHNSDFHIPKATLKDSGSYFCRGLVGS 160
Query: 123 GSAES 127
+ S
Sbjct: 161 KNVSS 165
Score = 39.5 bits (92), Expect = 0.002
Identities = 5/40 (12%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGD-LHVTV 42
+++ I + G Y C + + +++T+
Sbjct: 133 FHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI 172
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM;
1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 100 bits (251), Expect = 4e-22
Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 5/96 (5%)
Query: 792 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGDRFWYEN---PSTF-KPAQLTQI 847
++ + ++E G TM L + G+ PSTF I
Sbjct: 469 VMELYPALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTFGGEVGFKII 528
Query: 848 KQASLARVICDSGDRLTEV-RVCFSPRPTTSITPDP 882
AS+ +IC++ P+PT + T +
Sbjct: 529 NTASIQSLICNNVKGCPFTSFNVQDPQPTKTATINA 564
Score = 99.4 bits (247), Expect = 1e-21
Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 16/117 (13%)
Query: 513 LSEDLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAVS 572
++ S + + ++ E G+ + F A R N
Sbjct: 367 EDQEYSFKQFLY-NNSILLEHGLTQFVESFTRQIAGRVAGGRN------------VPIAV 413
Query: 573 LDLAAMNIQRGRDHGIPEYNAWREYCGLPRANTFEDLAREITDRRVRDKLQRLYGHP 629
+A +I + R+ N +R+ L +FE+L ++ + +L+ LY
Sbjct: 414 QAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEEL---TGEKEMAAELKALYSDI 467
Score = 54.7 bits (131), Expect = 9e-08
Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 2/42 (4%)
Query: 718 NIDPFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPF 759
++ + ++E G TM L + G +P
Sbjct: 469 VMELYPALLVEKPRPDAIFGETMVELGAPFSLKGLMG--NPI 508
Score = 29.7 bits (66), Expect = 5.6
Identities = 10/77 (12%), Positives = 26/77 (33%), Gaps = 16/77 (20%)
Query: 644 LIANLSGCMEHQRTANCSDLCFHTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGF 703
++ + S ++ T N H Y++ + N + + R L P+ ++
Sbjct: 85 VLTSRSYLIDSPPTYNV-----HYGYKSWEAFSNL----------SYYTRALPPVADDCP 129
Query: 704 STPVAPILSS-PMAGNI 719
+ P + +
Sbjct: 130 TPMGVKGNKELPDSKEV 146
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 94.6 bits (235), Expect = 4e-22
Identities = 31/202 (15%), Positives = 61/202 (30%), Gaps = 24/202 (11%)
Query: 46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMT-WFHDGNSLDSDDHVTYEHDGFVLVLN 104
+ P + + C P Q T WFH+ + + S ++
Sbjct: 8 AVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASS--------YFID 59
Query: 105 GVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPD- 163
D+G Y C Q S S +++ H L+ P + + + C
Sbjct: 60 AATVDDSGEYRCQTQLSTLSDP----VQLEVHIGWLLLQAPRWVFKE-EDPIHLRCHSWK 114
Query: 164 GEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV-AEGY 222
L ++++ ++ H + +DSG Y C
Sbjct: 115 NTALHKVTYLQNGKGR-----KYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQ 169
Query: 223 LTVTGAPPIFIQRPVSTTYSTG 244
+T+T + +S+ + G
Sbjct: 170 ITITQGLAV---STISSFFPPG 188
Score = 90.3 bits (224), Expect = 1e-20
Identities = 29/185 (15%), Positives = 55/185 (29%), Gaps = 21/185 (11%)
Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMT-WFHDGNSLDSDDHVTYEHDGFVLVLN 288
+ P + + C P Q T WFH+ + + S ++
Sbjct: 8 AVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASS--------YFID 59
Query: 289 GVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPD- 347
D+G Y C Q S S +++ H L+ P + + + C
Sbjct: 60 AATVDDSGEYRCQTQLSTLSDP----VQLEVHIGWLLLQAPRWVFKE-EDPIHLRCHSWK 114
Query: 348 GEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV-AEGY 406
L ++++ ++ H + +DSG Y C
Sbjct: 115 NTALHKVTYLQNGKGR-----KYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQ 169
Query: 407 LTVTG 411
+T+T
Sbjct: 170 ITITQ 174
Score = 79.5 bits (196), Expect = 6e-17
Identities = 18/125 (14%), Positives = 35/125 (28%), Gaps = 10/125 (8%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTS 63
++ I + G Y C + + V+ + +Q P +
Sbjct: 50 SSQASSYFIDAATVDDSGEYRCQTQL--STLSDPVQLEVHIGWLLLQAP-RWVFKEEDPI 106
Query: 64 RITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSE 122
+ C L ++T+ +G Y H + D+G Y C
Sbjct: 107 HLRCHSWKNTALHKVTYLQNGKGR------KYFHHNSDFYIPKATLKDSGSYFCRGLVGS 160
Query: 123 GSAES 127
+ S
Sbjct: 161 KNVSS 165
Score = 42.2 bits (99), Expect = 3e-04
Identities = 5/44 (11%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGD-LHVTVNAPP 46
+++ I + G Y C + + + +T+
Sbjct: 133 FHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGL 176
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 94.7 bits (235), Expect = 4e-22
Identities = 37/212 (17%), Positives = 67/212 (31%), Gaps = 37/212 (17%)
Query: 150 APAGSSVEIPCKPDGEPLP-----RISWSKDEAEFVEDRNHK------------------ 186
GS++ I CK E + W ++ ++ + +
Sbjct: 13 VEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLK 72
Query: 187 ---IHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYST 243
+L++ ++ QD+G+YRC S G D + V AP I + +
Sbjct: 73 DQLSLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKVN-APYNKINQRILVVDPV 130
Query: 244 GSTSRITCLVEGHPLPQMTWF-HDGNSLDSDDHVTYEHDGFVL-----VLNGVRESDAGV 297
S +TC EG+P ++ W D L T L L + + +
Sbjct: 131 TSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLR-INTTTNEI 189
Query: 298 YNCVAQNSEGSAESVAMIRINGHRAPRLVVKP 329
+ C + + A + I P
Sbjct: 190 FYCTFRRLDPEENHTAELVI--PELPLAHPPN 219
Score = 93.9 bits (233), Expect = 9e-22
Identities = 29/171 (16%), Positives = 60/171 (35%), Gaps = 14/171 (8%)
Query: 76 QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 135
Q + + L D L + V+ DAGVY C+ G+ +++
Sbjct: 60 QHSSYRQRARLLKDQL---SLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKV-- 113
Query: 136 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRL 195
+ + + + P S E+ C+ +G P + W+ + + + + + +L
Sbjct: 114 NAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKL 173
Query: 196 YNIG------PQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTT 240
+N+ + ++ CT L E+ L + P P T
Sbjct: 174 FNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPLAHP--PNERT 222
Score = 93.1 bits (231), Expect = 2e-21
Identities = 27/166 (16%), Positives = 58/166 (34%), Gaps = 12/166 (7%)
Query: 260 QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 319
Q + + L D L + V+ DAGVY C+ G+ +++
Sbjct: 60 QHSSYRQRARLLKDQL---SLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKV-- 113
Query: 320 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRL 379
+ + + + P S E+ C+ +G P + W+ + + + + + +L
Sbjct: 114 NAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKL 173
Query: 380 YNIG------PQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAP 419
+N+ + ++ CT L E+ L + P
Sbjct: 174 FNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPLAHPPN 219
Score = 85.4 bits (211), Expect = 9e-19
Identities = 29/142 (20%), Positives = 47/142 (33%), Gaps = 10/142 (7%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLV 69
L I+ V+ + G Y C+ G + V VNAP I + + S +TC
Sbjct: 82 LQITDVKLQDAGVYRCMISYG-GADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQA 140
Query: 70 EGHPLPQMTWF-HDGNSLDSDDHVTYEHDGFVL-----VLNGVRESDAGVYNCVAQNSEG 123
EG+P ++ W D L T L L + + ++ C + +
Sbjct: 141 EGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLR-INTTTNEIFYCTFRRLDP 199
Query: 124 SAESVAMIRINGHRAPRLVVKP 145
A + I P
Sbjct: 200 EENHTAELVI--PELPLAHPPN 219
Score = 45.8 bits (108), Expect = 2e-05
Identities = 20/121 (16%), Positives = 39/121 (32%), Gaps = 27/121 (22%)
Query: 334 APAGSSVEIPCKPDGEPLP-----RISWSKDEAEFVEDRNHK------------------ 370
GS++ I CK E + W ++ ++ + +
Sbjct: 13 VEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLK 72
Query: 371 ---IHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSA 427
+L++ ++ QD+G+YRC S G D + V + +P
Sbjct: 73 DQLSLGNAALQITDVKLQDAGVYRCMISY-GGADYKRITVKVNAPYNKINQRILVVDPVT 131
Query: 428 S 428
S
Sbjct: 132 S 132
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 94.2 bits (233), Expect = 5e-22
Identities = 32/190 (16%), Positives = 55/190 (28%), Gaps = 37/190 (19%)
Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 212
SV + C I+W KD K L + G+Y+C S
Sbjct: 18 DGSVLLTC---DAEAKNITWFKDGKMIGFLTEDKKK----WNLGSNAKDPRGMYQCKGSQ 70
Query: 213 LLGEDVAEGYLTVTG--------------------------APPIFIQRPVSTTYSTGST 246
+ + Y + I + +G+T
Sbjct: 71 NKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTT 130
Query: 247 SRITCLVEGHPLPQMTWFHDGNSLDSD-DHVTYEHDGFVLVLNGVRE-SDAGVYNCVAQN 304
+TC +P ++ W H+ ++ D D D L L E +G Y C +
Sbjct: 131 VILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRG 188
Query: 305 SEGSAESVAM 314
S+ + +
Sbjct: 189 SKPEDANFYL 198
Score = 83.8 bits (206), Expect = 2e-18
Identities = 35/189 (18%), Positives = 53/189 (28%), Gaps = 39/189 (20%)
Query: 66 TCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA 125
TC +TWF DG + D L + G+Y C ++
Sbjct: 24 TC---DAEAKNITWFKDGKMIGFLTE-----DKKKWNLGSNAKDPRGMYQCKGSQNKSKP 75
Query: 126 ESVAMIRINGHRAPRLVVKPFDMRAP-------------------------AGSSVEIPC 160
V + A + K D + +G++V + C
Sbjct: 76 LQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTC 135
Query: 161 KPDGEPLPRISWSKDEAEFVEDRNHKI--HRTGSLRLYNIGP-QDSGLYRCTASNLLGED 217
P I W ++ D + K L L + SG Y C ED
Sbjct: 136 PQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPED 193
Query: 218 VAEGYLTVT 226
A YL +
Sbjct: 194 -ANFYLYLR 201
Score = 83.8 bits (206), Expect = 2e-18
Identities = 35/189 (18%), Positives = 53/189 (28%), Gaps = 39/189 (20%)
Query: 250 TCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA 309
TC +TWF DG + D L + G+Y C ++
Sbjct: 24 TC---DAEAKNITWFKDGKMIGFLTE-----DKKKWNLGSNAKDPRGMYQCKGSQNKSKP 75
Query: 310 ESVAMIRINGHRAPRLVVKPFDMRAP-------------------------AGSSVEIPC 344
V + A + K D + +G++V + C
Sbjct: 76 LQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTC 135
Query: 345 KPDGEPLPRISWSKDEAEFVEDRNHKI--HRTGSLRLYNIGP-QDSGLYRCTASNLLGED 401
P I W ++ D + K L L + SG Y C ED
Sbjct: 136 PQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPED 193
Query: 402 VAEGYLTVT 410
A YL +
Sbjct: 194 -ANFYLYLR 201
Score = 73.4 bits (179), Expect = 7e-15
Identities = 22/159 (13%), Positives = 41/159 (25%), Gaps = 31/159 (19%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVY-------------------------- 34
+ + ++ G Y C
Sbjct: 42 GFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKD 101
Query: 35 -RGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSD-DHV 92
N I + +G+T +TC +P ++ W H+ ++ D D
Sbjct: 102 DAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDK 159
Query: 93 TYEHDGFVLVLNGVRE-SDAGVYNCVAQNSEGSAESVAM 130
D L L E +G Y C + S+ + +
Sbjct: 160 NIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYL 198
Score = 61.8 bits (149), Expect = 7e-11
Identities = 17/119 (14%), Positives = 33/119 (27%), Gaps = 7/119 (5%)
Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 396
SV + C I+W KD K L + G+Y+C S
Sbjct: 18 DGSVLLTC---DAEAKNITWFKDGKMIGFLTEDKKK----WNLGSNAKDPRGMYQCKGSQ 70
Query: 397 LLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVNAT 455
+ + Y + +++ + A D + +++ T
Sbjct: 71 NKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGT 129
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 89.4 bits (222), Expect = 1e-21
Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 7/99 (7%)
Query: 36 GDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE 95
G + + P + G T +TC V P PQ+ W DG L
Sbjct: 1 GSSGSSGLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLP------ 54
Query: 96 HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 134
VL+L + D G Y+CVA +S + + I+
Sbjct: 55 -PSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSIS 92
Score = 87.9 bits (218), Expect = 4e-21
Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 7/95 (7%)
Query: 224 TVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF 283
+ + P + G T +TC V P PQ+ W DG L
Sbjct: 5 SSGLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLP-------PSP 57
Query: 284 VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 318
VL+L + D G Y+CVA +S + + I+
Sbjct: 58 VLILPEIGPQDQGTYSCVATHSSHGPQESRAVSIS 92
Score = 86.3 bits (214), Expect = 2e-20
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 12/108 (11%)
Query: 123 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED 182
GS+ S + +LVV+P G +V + C+ +P P+I W KD
Sbjct: 1 GSSGSSGL------EEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKD------G 48
Query: 183 RNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPP 230
+ + L L IGPQD G Y C A++ ++++ P
Sbjct: 49 VPLPLPPSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96
Score = 84.0 bits (208), Expect = 9e-20
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 12/104 (11%)
Query: 307 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED 366
GS+ S + +LVV+P G +V + C+ +P P+I W KD
Sbjct: 1 GSSGSSGL------EEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKD------G 48
Query: 367 RNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
+ + L L IGPQD G Y C A++ ++++
Sbjct: 49 VPLPLPPSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSIS 92
Score = 44.3 bits (105), Expect = 8e-06
Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGVYR--GDLHVTVNAP 45
S L++ + + G YSCVA + + + + +++ P
Sbjct: 55 PSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 89.3 bits (222), Expect = 1e-21
Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 3/91 (3%)
Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLR 194
P+++ ++ AG + + G P P +W+ ++ + S+
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61
Query: 195 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
+ DSG Y+ N LGED A + V
Sbjct: 62 FPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
Score = 89.3 bits (222), Expect = 1e-21
Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 3/91 (3%)
Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLR 378
P+++ ++ AG + + G P P +W+ ++ + S+
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61
Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
+ DSG Y+ N LGED A + V
Sbjct: 62 FPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
Score = 88.1 bits (219), Expect = 3e-21
Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 2/91 (2%)
Query: 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG--FVLV 102
P + G T + G P P TW + + + +
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61
Query: 103 LNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
+ +D+G Y +N G E++ + +
Sbjct: 62 FPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
Score = 88.1 bits (219), Expect = 3e-21
Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 2/91 (2%)
Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG--FVLV 286
P + G T + G P P TW + + + +
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61
Query: 287 LNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
+ +D+G Y +N G E++ + +
Sbjct: 62 FPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
Score = 43.5 bits (103), Expect = 1e-05
Identities = 8/36 (22%), Positives = 11/36 (30%)
Query: 7 STELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV 42
+T + +R G Y N G V V
Sbjct: 57 TTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 89.4 bits (222), Expect = 1e-21
Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN 197
+ V+ G +++ C+ + I+W +D + E +I + + +
Sbjct: 3 SGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRI-TGEEVEVQD 60
Query: 198 IGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPP 230
P DSGLY C S+ G D + V+ A P
Sbjct: 61 SVPADSGLYACVTSSPSGSDTTYFSVNVSDALP 93
Score = 87.1 bits (216), Expect = 7e-21
Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 2/97 (2%)
Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYN 381
+ V+ G +++ C+ + I+W +D + E +I + + +
Sbjct: 3 SGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRI-TGEEVEVQD 60
Query: 382 IGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPA 418
P DSGLY C S+ G D + V+ P+
Sbjct: 61 SVPADSGLYACVTSSPSGSDTTYFSVNVSDALPSGPS 97
Score = 80.5 bits (199), Expect = 2e-18
Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 3/91 (3%)
Query: 227 GAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLV 286
G+ S G ++ C + + W DG L + + +
Sbjct: 1 GSSGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGE--EVE 57
Query: 287 LNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
+ +D+G+Y CV + GS + + +
Sbjct: 58 VQDSVPADSGLYACVTSSPSGSDTTYFSVNV 88
Score = 77.8 bits (192), Expect = 2e-17
Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 3/90 (3%)
Query: 44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVL 103
+ S G ++ C + + W DG L + + + +
Sbjct: 2 SSGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGE--EVEV 58
Query: 104 NGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
+D+G+Y CV + GS + + +
Sbjct: 59 QDSVPADSGLYACVTSSPSGSDTTYFSVNV 88
Score = 44.7 bits (106), Expect = 6e-06
Identities = 9/41 (21%), Positives = 16/41 (39%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP 46
+ E+ + G Y+CV +P+G V V+
Sbjct: 52 TGEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDAL 92
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 93.0 bits (231), Expect = 1e-21
Identities = 27/128 (21%), Positives = 45/128 (35%), Gaps = 11/128 (8%)
Query: 21 GRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWF 80
Y+ + + P Q PV+ G+ ITC V +P ++WF
Sbjct: 1 ATYAAASSALVP------RGSHMYAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWF 53
Query: 81 HDGNSLDSDDHVTYE----HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGH 136
DG L S ++ + L + E+D G YNC A N G ++
Sbjct: 54 RDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADT 113
Query: 137 RAPRLVVK 144
+ + +
Sbjct: 114 PSSPSIDQ 121
Score = 91.4 bits (227), Expect = 6e-21
Identities = 30/137 (21%), Positives = 45/137 (32%), Gaps = 17/137 (12%)
Query: 112 GVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRIS 171
Y + + AP+ + P + G+ V I C+ P IS
Sbjct: 1 ATYAAASSALVPRGSHMY--------APK-LQGPVAVYTWEGNQVNITCEVFAYPSATIS 51
Query: 172 WSKDEAEFVEDRNHKIHRTGS-----LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 226
W +D I + L + D G Y CTA N +G++ E L
Sbjct: 52 WFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQA 111
Query: 227 ---GAPPIFIQRPVSTT 240
+P I P S+T
Sbjct: 112 DTPSSPSIDQVEPYSST 128
Score = 90.3 bits (224), Expect = 1e-20
Identities = 29/129 (22%), Positives = 46/129 (35%), Gaps = 12/129 (9%)
Query: 204 GLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTW 263
Y +S L+ P Q PV+ G+ ITC V +P ++W
Sbjct: 1 ATYAAASSALVPRGSHM-------YAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISW 52
Query: 264 FHDGNSLDSDDHVTYE----HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 319
F DG L S ++ + L + E+D G YNC A N G ++
Sbjct: 53 FRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQAD 112
Query: 320 HRAPRLVVK 328
+ + +
Sbjct: 113 TPSSPSIDQ 121
Score = 88.0 bits (218), Expect = 8e-20
Identities = 29/148 (19%), Positives = 44/148 (29%), Gaps = 23/148 (15%)
Query: 296 GVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRIS 355
Y + + AP+ + P + G+ V I C+ P IS
Sbjct: 1 ATYAAASSALVPRGSHMY--------APK-LQGPVAVYTWEGNQVNITCEVFAYPSATIS 51
Query: 356 WSKDEAEFVEDRNHKIHRTGS-----LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
W +D I + L + D G Y CTA N +G++ E L
Sbjct: 52 WFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQA 111
Query: 411 GENSVEPAPHTSREPSASKPSVADDTIH 438
P+ PS + T
Sbjct: 112 D----TPSS-----PSIDQVEPYSSTAQ 130
Score = 46.4 bits (110), Expect = 1e-05
Identities = 11/57 (19%), Positives = 20/57 (35%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGST 62
S++ L ++ G Y+C A N G + + P YS+ +
Sbjct: 74 SASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQVEPYSSTAQ 130
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 90.5 bits (224), Expect = 2e-21
Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 15/125 (12%)
Query: 34 YRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLD------ 87
+ L + F+Q P+S G + + C G P+P++ W+ +G +
Sbjct: 10 HSSGLVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQL 69
Query: 88 ---------SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRA 138
++H + ++ + E D G Y C A N R+ RA
Sbjct: 70 WDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRA 129
Query: 139 PRLVV 143
+V+
Sbjct: 130 QAVVL 134
Score = 87.8 bits (217), Expect = 1e-20
Identities = 24/135 (17%), Positives = 41/135 (30%), Gaps = 23/135 (17%)
Query: 112 GVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRIS 171
G + +S G + V P + G SVE+ C+ G P+P I
Sbjct: 2 GSSHHHHHHSSGLVPRGS-------HMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQ 54
Query: 172 WSKDEAEFVEDRNH----------------KIHRTGSLRLYNIGPQDSGLYRCTASNLLG 215
W + + + H ++ + + +D+G Y C ASN
Sbjct: 55 WWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPD 114
Query: 216 EDVAEGYLTVTGAPP 230
+ V
Sbjct: 115 RNHLTRAPRVKWVRA 129
Score = 87.8 bits (217), Expect = 2e-20
Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 15/116 (12%)
Query: 227 GAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLD--------------- 271
F+Q P+S G + + C G P+P++ W+ +G +
Sbjct: 19 SHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRV 78
Query: 272 SDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVV 327
++H + ++ + E D G Y C A N R+ RA +V+
Sbjct: 79 HIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQAVVL 134
Score = 85.1 bits (210), Expect = 1e-19
Identities = 24/132 (18%), Positives = 41/132 (31%), Gaps = 23/132 (17%)
Query: 296 GVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRIS 355
G + +S G + V P + G SVE+ C+ G P+P I
Sbjct: 2 GSSHHHHHHSSGLVPRGS-------HMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQ 54
Query: 356 WSKDEAEFVEDRNH----------------KIHRTGSLRLYNIGPQDSGLYRCTASNLLG 399
W + + + H ++ + + +D+G Y C ASN
Sbjct: 55 WWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPD 114
Query: 400 EDVAEGYLTVTG 411
+ V
Sbjct: 115 RNHLTRAPRVKW 126
Score = 38.1 bits (88), Expect = 0.003
Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
Query: 3 DRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTT 56
+ +++ + I + E G Y C A N H+T +++
Sbjct: 85 HQHAASTISIDTLVEEDTGTYECRASNDPDR----NHLTRAPRVKWVRAQAVVL 134
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 90.8 bits (225), Expect = 3e-21
Identities = 28/176 (15%), Positives = 55/176 (31%), Gaps = 31/176 (17%)
Query: 153 GSSVEIPCKPDGEPLPRISWSKDEAEFVE-------------DRNHKIHRTGSLRLYNIG 199
+V P PL + W K + + E +R + +GSL +YN+
Sbjct: 10 YGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLT 68
Query: 200 PQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLP 259
D Y + N+ + +L V +P+ S + +TC V
Sbjct: 69 SSDEDEYEMESPNITDT--MKFFLYVLEMVS----KPMIYW--ECSNATLTCEVLEGTDV 120
Query: 260 QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMI 315
++ + L S ++ + + C A N + ++
Sbjct: 121 ELKLYQGKEHLRSLR---------QKTMSYQWTNLRAPFKCKAVNRVSQESEMEVV 167
Score = 63.4 bits (154), Expect = 1e-11
Identities = 15/122 (12%), Positives = 31/122 (25%), Gaps = 16/122 (13%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLV 69
L I + Y + N + + V Y S + +TC V
Sbjct: 62 LTIYNLTSSDEDEYEMESPNITDTMK--FFLYVLEMV-----SKPMIYWECSNATLTCEV 114
Query: 70 EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVA 129
++ + L S ++ + + C A N +
Sbjct: 115 LEGTDVELKLYQGKEHLRSLR---------QKTMSYQWTNLRAPFKCKAVNRVSQESEME 165
Query: 130 MI 131
++
Sbjct: 166 VV 167
Score = 56.1 bits (135), Expect = 3e-09
Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 19/103 (18%)
Query: 337 GSSVEIPCKPDGEPLPRISWSKDEAEFVE-------------DRNHKIHRTGSLRLYNIG 383
+V P PL + W K + + E +R + +GSL +YN+
Sbjct: 10 YGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLT 68
Query: 384 PQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPS 426
D Y + N+ + +L V + P E S
Sbjct: 69 SSDEDEYEMESPNITDT--MKFFLYV---LEMVSKPMIYWECS 106
Score = 49.2 bits (117), Expect = 7e-07
Identities = 14/170 (8%), Positives = 44/170 (25%), Gaps = 31/170 (18%)
Query: 70 EGHPLPQMTWFHDGNSL------------DSDDHVTYEHDGFVLVLNGVRESDAGVYNCV 117
PL ++ W + + + V + L + + SD Y
Sbjct: 19 SNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEME 78
Query: 118 AQNSEGSAE-SVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDE 176
+ N + + + ++ + ++ S+ + C+ + +
Sbjct: 79 SPNITDTMKFFLYVLE----MVSKPMIY------WECSNATLTCEVLEGTDVELKLYQG- 127
Query: 177 AEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 226
+ + ++C A N + ++ +
Sbjct: 128 -------KEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNCP 170
Score = 49.2 bits (117), Expect = 7e-07
Identities = 14/170 (8%), Positives = 44/170 (25%), Gaps = 31/170 (18%)
Query: 254 EGHPLPQMTWFHDGNSL------------DSDDHVTYEHDGFVLVLNGVRESDAGVYNCV 301
PL ++ W + + + V + L + + SD Y
Sbjct: 19 SNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEME 78
Query: 302 AQNSEGSAE-SVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDE 360
+ N + + + ++ + ++ S+ + C+ + +
Sbjct: 79 SPNITDTMKFFLYVLE----MVSKPMIYW------ECSNATLTCEVLEGTDVELKLYQG- 127
Query: 361 AEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
+ + ++C A N + ++ +
Sbjct: 128 -------KEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNCP 170
Score = 32.2 bits (73), Expect = 0.47
Identities = 6/28 (21%), Positives = 9/28 (32%)
Query: 5 RSSTELVISGVQREHGGRYSCVAGNPAG 32
RS + +S + C A N
Sbjct: 132 RSLRQKTMSYQWTNLRAPFKCKAVNRVS 159
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 88.3 bits (219), Expect = 3e-21
Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 7/97 (7%)
Query: 44 APPIFIQ----RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEH 96
P + +T + C G+P+P M W +G + + +
Sbjct: 3 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN 62
Query: 97 DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
+ L++ V SD G Y CV +N GS + +
Sbjct: 63 QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
Score = 88.3 bits (219), Expect = 3e-21
Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 7/97 (7%)
Query: 228 APPIFIQ----RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV---TYEH 280
P + +T + C G+P+P M W +G + + +
Sbjct: 3 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN 62
Query: 281 DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
+ L++ V SD G Y CV +N GS + +
Sbjct: 63 QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
Score = 82.5 bits (204), Expect = 4e-19
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 8/97 (8%)
Query: 137 RAPRLV----VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR--- 189
RAP ++ PA ++V+ C G P+P + W K+ EF ++ ++
Sbjct: 3 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN 62
Query: 190 -TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
SL + ++ P D G Y C N G +L V
Sbjct: 63 QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
Score = 82.5 bits (204), Expect = 4e-19
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 8/97 (8%)
Query: 321 RAPRLV----VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR--- 373
RAP ++ PA ++V+ C G P+P + W K+ EF ++ ++
Sbjct: 3 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN 62
Query: 374 -TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
SL + ++ P D G Y C N G +L V
Sbjct: 63 QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
Score = 35.9 bits (83), Expect = 0.007
Identities = 11/40 (27%), Positives = 15/40 (37%)
Query: 3 DRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV 42
R L++ V G Y+CV N G H+ V
Sbjct: 60 VRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 87.8 bits (218), Expect = 3e-21
Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 7/87 (8%)
Query: 227 GAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLV 286
G+ P S GST + C+ G P+P WF + L + + +
Sbjct: 1 GSKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-------TKKLYM 53
Query: 287 LNGVRESDAGVYNCVAQNSEGSAESVA 313
+ V G Y C N S +S
Sbjct: 54 VPYVDLEHQGTYWCHVYNDRDSQDSKK 80
Score = 85.9 bits (213), Expect = 2e-20
Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 7/86 (8%)
Query: 44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVL 103
+ P S GST + C+ G P+P WF + L + + ++
Sbjct: 2 SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-------TKKLYMV 54
Query: 104 NGVRESDAGVYNCVAQNSEGSAESVA 129
V G Y C N S +S
Sbjct: 55 PYVDLEHQGTYWCHVYNDRDSQDSKK 80
Score = 76.6 bits (189), Expect = 3e-17
Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 6/94 (6%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNI 198
++ V+P + GS++ + C G P+P W K+E + + +
Sbjct: 4 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK------LYMVPYV 57
Query: 199 GPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIF 232
+ G Y C N ++ +
Sbjct: 58 DLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL 91
Score = 74.7 bits (184), Expect = 1e-16
Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 6/90 (6%)
Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNI 382
++ V+P + GS++ + C G P+P W K+E + + +
Sbjct: 4 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK------LYMVPYV 57
Query: 383 GPQDSGLYRCTASNLLGEDVAEGYLTVTGE 412
+ G Y C N ++ + E
Sbjct: 58 DLEHQGTYWCHVYNDRDSQDSKKVEIIIDE 87
Score = 42.7 bits (101), Expect = 3e-05
Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAG-VYRGDLHVTVNAPPIF 48
+ ++ V EH G Y C N + + ++
Sbjct: 48 TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL 91
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 86.8 bits (215), Expect = 2e-20
Identities = 32/110 (29%), Positives = 40/110 (36%), Gaps = 11/110 (10%)
Query: 136 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT----- 190
PR+V P D+ G + CK +G P P I W K D++
Sbjct: 7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPS 66
Query: 191 GSLRLYNI-----GPQDSGLYRCTASNLLGEDV-AEGYLTVTGAPPIFIQ 234
GSL I D G+Y C A N LGE V + L V A
Sbjct: 67 GSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHHHHH 116
Score = 85.6 bits (212), Expect = 4e-20
Identities = 29/113 (25%), Positives = 43/113 (38%), Gaps = 12/113 (10%)
Query: 42 VNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH----- 96
+ PP ++ P S G + + C EG P P + W+ G +++D H
Sbjct: 6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 97 DGFVLVLN----GVRESDAGVYNCVAQNSEGSAES-VAMIRINGHRAPRLVVK 144
G + L D GVY CVA+N G A S A + + A
Sbjct: 66 SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAA--AAHHHHH 116
Score = 84.1 bits (208), Expect = 1e-19
Identities = 30/116 (25%), Positives = 43/116 (37%), Gaps = 12/116 (10%)
Query: 223 LTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH-- 280
L PP ++ P S G + + C EG P P + W+ G +++D H
Sbjct: 3 LRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRM 62
Query: 281 ---DGFVLVLN----GVRESDAGVYNCVAQNSEGSAES-VAMIRINGHRAPRLVVK 328
G + L D GVY CVA+N G A S A + + A
Sbjct: 63 LLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAA--AAHHHHH 116
Score = 81.0 bits (200), Expect = 2e-18
Identities = 31/103 (30%), Positives = 39/103 (37%), Gaps = 11/103 (10%)
Query: 320 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT----- 374
PR+V P D+ G + CK +G P P I W K D++
Sbjct: 7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPS 66
Query: 375 GSLRLYNI-----GPQDSGLYRCTASNLLGEDV-AEGYLTVTG 411
GSL I D G+Y C A N LGE V + L V
Sbjct: 67 GSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAA 109
Score = 34.4 bits (79), Expect = 0.033
Identities = 12/41 (29%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 9 ELVISGVQREHGGRYSCVAGNPAG-VYRGDLHVTVNAPPIF 48
+V R G Y CVA N G D + V A
Sbjct: 73 RIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHH 113
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 85.1 bits (211), Expect = 4e-20
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 3/95 (3%)
Query: 46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFV--LV 102
+ + + G + C +E + Q+TW+ L++ + ++ V L
Sbjct: 2 AMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILY 61
Query: 103 LNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHR 137
+ + + D G Y C N G S A + + G R
Sbjct: 62 VKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGVR 96
Score = 85.1 bits (211), Expect = 4e-20
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 3/95 (3%)
Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLP-QMTWFHDGNSLDSDDHVTYEHDGFV--LV 286
+ + + G + C +E + Q+TW+ L++ + ++ V L
Sbjct: 2 AMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILY 61
Query: 287 LNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHR 321
+ + + D G Y C N G S A + + G R
Sbjct: 62 VKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGVR 96
Score = 78.9 bits (195), Expect = 6e-18
Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 4/96 (4%)
Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKIHRTG---SL 193
+ + G V+ CK + +++W + ++I L
Sbjct: 1 GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAIL 60
Query: 194 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAP 229
+ +I D G YRC N GED + L V G
Sbjct: 61 YVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGVR 96
Score = 78.5 bits (194), Expect = 8e-18
Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 4/94 (4%)
Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVEDRNHKIHRTG---SL 377
+ + G V+ CK + +++W + ++I L
Sbjct: 1 GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAIL 60
Query: 378 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
+ +I D G YRC N GED + L V G
Sbjct: 61 YVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKG 94
Score = 35.4 bits (82), Expect = 0.012
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 10 LVISGVQREHGGRYSCVAGNPAG 32
L + + + G Y C N G
Sbjct: 60 LYVKDITKLDDGTYRCKVVNDYG 82
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 90.3 bits (223), Expect = 6e-20
Identities = 40/292 (13%), Positives = 78/292 (26%), Gaps = 23/292 (7%)
Query: 52 PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDA 111
P G + +TC + + V +
Sbjct: 6 PSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPG-----NNRKVYELSNVQED 60
Query: 112 GVYNCVAQNSEGSAESVAMIRINGHRAPRLV-VKPFDMRAPAGSSVEIPCK-PDGEPLPR 169
C + +G + + + + + P V + P P G ++ + C+ G P
Sbjct: 61 SQPMCYSNCPDGQSTAKTFLTV--YWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRAN 118
Query: 170 --ISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED--------VA 219
+ + E E + + + + C L A
Sbjct: 119 LTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSA 178
Query: 220 EGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTY 278
L P Q + + C ++G P+ + + VTY
Sbjct: 179 PYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTY 238
Query: 279 EHDGFVLVLNG-VRESDAGVYN--CVAQNSEGSAESVAMIRINGHRAPRLVV 327
+D F + V D G C S E++ + I AP +++
Sbjct: 239 GNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVIL 290
Score = 88.0 bits (217), Expect = 3e-19
Identities = 46/282 (16%), Positives = 89/282 (31%), Gaps = 20/282 (7%)
Query: 143 VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGP-Q 201
V P + P G SV + C + + E + + + ++Y + Q
Sbjct: 4 VSPSKVILPRGGSVLVTCSTSCDQPKLLGI-----ETPLPKKELLLPGNNRKVYELSNVQ 58
Query: 202 DSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEG-HPLPQ 260
+ C ++ G+ A+ +LTV P P+ + G + C VEG P
Sbjct: 59 EDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRAN 118
Query: 261 MT--WFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE------SV 312
+T L + V + VL R+ ++C + +
Sbjct: 119 LTVVLLRGEKELKREPAVGEPAEVTTTVL-VRRDHHGANFSCRTELDLRPQGLELFENTS 177
Query: 313 AMIRINGHRAPRLVVK-PFDMRAPAGSSVEIPCKPDGEPLP---RISWSKDEAEFVEDRN 368
A ++ P + + + C DG ++ + +
Sbjct: 178 APYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVT 237
Query: 369 HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
+ + ++ +D G R T + +LG E TVT
Sbjct: 238 YGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVT 279
Score = 75.7 bits (185), Expect = 6e-15
Identities = 33/246 (13%), Positives = 66/246 (26%), Gaps = 19/246 (7%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP-IFIQRPVSTTYST 59
+ +S VQ + + C + P G +TV P P+ +
Sbjct: 43 LLPGNNRKVYELSNVQED--SQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPV 100
Query: 60 GSTSRITCLVEG-HPLPQMT--WFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNC 116
G + C VEG P +T L + V + VL R+ ++C
Sbjct: 101 GKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVL-VRRDHHGANFSC 159
Query: 117 VAQNSEGSAE------SVAMIRINGHRAPRLVVK-PFDMRAPAGSSVEIPCKPDGEPLP- 168
+ + A ++ P + + + C DG
Sbjct: 160 RTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVS 219
Query: 169 --RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLY--RCTASNLLGEDVAEGYLT 224
++ + + + + ++ +D G C +T
Sbjct: 220 EAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVT 279
Query: 225 VTGAPP 230
+ P
Sbjct: 280 IYSFPA 285
Score = 56.0 bits (134), Expect = 1e-08
Identities = 25/153 (16%), Positives = 46/153 (30%), Gaps = 13/153 (8%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNA---------PPIFIQRPVS 54
+ + + HG +SC +L +A P Q
Sbjct: 138 EPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSP 197
Query: 55 TTYSTGSTSRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNG-VRESDAG 112
+ + C ++G P+ + + VTY +D F + V D G
Sbjct: 198 RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEG 257
Query: 113 VYN--CVAQNSEGSAESVAMIRINGHRAPRLVV 143
C S E++ + I AP +++
Sbjct: 258 TQRLTCAVILGNQSQETLQTVTIYSFPAPNVIL 290
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 84.4 bits (209), Expect = 1e-19
Identities = 23/107 (21%), Positives = 38/107 (35%), Gaps = 8/107 (7%)
Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG----S 192
R ++ D+ GSS C+ + W D+ + ++I
Sbjct: 12 RRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHV 71
Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVST 239
L L + +DSG A G+ A L VT P +F + S+
Sbjct: 72 LTLRQLALKDSGTIYFEA----GDQRASAALRVTEKPSVFSRSGPSS 114
Score = 82.1 bits (203), Expect = 8e-19
Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 3/91 (3%)
Query: 223 LTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE-HD 281
V G I+ GS++ C + + WF D L +++ +
Sbjct: 7 GLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQP 66
Query: 282 GFV--LVLNGVRESDAGVYNCVAQNSEGSAE 310
G L L + D+G A + SA
Sbjct: 67 GGYHVLTLRQLALKDSGTIYFEAGDQRASAA 97
Score = 75.5 bits (186), Expect = 1e-16
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 3/85 (3%)
Query: 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE-HDGFV--L 101
I+ GS++ C + + WF D L +++ + G L
Sbjct: 13 RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVL 72
Query: 102 VLNGVRESDAGVYNCVAQNSEGSAE 126
L + D+G A + SA
Sbjct: 73 TLRQLALKDSGTIYFEAGDQRASAA 97
Score = 75.5 bits (186), Expect = 1e-16
Identities = 24/112 (21%), Positives = 37/112 (33%), Gaps = 13/112 (11%)
Query: 321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG----S 376
R ++ D+ GSS C+ + W D+ + ++I
Sbjct: 12 RRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHV 71
Query: 377 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSAS 428
L L + +DSG A G+ A L VT E SR +S
Sbjct: 72 LTLRQLALKDSGTIYFEA----GDQRASAALRVT-----EKPSVFSRSGPSS 114
Score = 39.3 bits (92), Expect = 6e-04
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVST 55
L + + + G AG+ L VT P +F + S+
Sbjct: 72 LTLRQLALKDSGTIYFEAGDQRA--SAALRVTE-KPSVFSRSGPSS 114
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 82.2 bits (203), Expect = 4e-19
Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 5/93 (5%)
Query: 136 HRAPRLVV--KPFDMRAPAGSSVEIPCKPD-GEPLPRISWSKDEAEFVEDRNHKIHRTGS 192
P +V + G+ V C P + W++ + R + G
Sbjct: 6 PSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA--MDFNGI 63
Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
L + N+ P D+G Y CT SN+ D L V
Sbjct: 64 LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96
Score = 82.2 bits (203), Expect = 4e-19
Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 5/93 (5%)
Query: 320 HRAPRLVV--KPFDMRAPAGSSVEIPCKPD-GEPLPRISWSKDEAEFVEDRNHKIHRTGS 376
P +V + G+ V C P + W++ + R + G
Sbjct: 6 PSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA--MDFNGI 63
Query: 377 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
L + N+ P D+G Y CT SN+ D L V
Sbjct: 64 LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96
Score = 78.3 bits (193), Expect = 9e-18
Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 5/97 (5%)
Query: 223 LTVTGAPP-IFIQRPVSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEH 280
L P + ++ S + G+ C + P + W N + +
Sbjct: 3 LAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDF-- 60
Query: 281 DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
+G +L + V+ SDAG Y C N + A + +
Sbjct: 61 NG-ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96
Score = 78.3 bits (193), Expect = 1e-17
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 4/97 (4%)
Query: 38 LHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEH 96
L + ++ S + G+ C + P + W N + +
Sbjct: 3 LAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDF-- 60
Query: 97 DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
+G +L + V+ SDAG Y C N + A + +
Sbjct: 61 NG-ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96
Score = 42.5 bits (100), Expect = 4e-05
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV 42
+ L I VQ G Y C N + +G + V
Sbjct: 58 MDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 82.2 bits (203), Expect = 4e-19
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNI 198
+ V+ + G +++ C+ + I+W +D + VE +I + + +
Sbjct: 10 WGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITG-EEVEVRDS 67
Query: 199 GPQDSGLYRCTASNLLGEDVAEGYLTVT 226
P DSGLY C S+ G D + V+
Sbjct: 68 IPADSGLYACVTSSPSGSDTTYFSVNVS 95
Score = 82.2 bits (203), Expect = 4e-19
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNI 382
+ V+ + G +++ C+ + I+W +D + VE +I + + +
Sbjct: 10 WGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITG-EEVEVRDS 67
Query: 383 GPQDSGLYRCTASNLLGEDVAEGYLTVT 410
P DSGLY C S+ G D + V+
Sbjct: 68 IPADSGLYACVTSSPSGSDTTYFSVNVS 95
Score = 78.7 bits (194), Expect = 7e-18
Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 3/92 (3%)
Query: 42 VNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVL 101
P S G ++ C + + W DG L + + +
Sbjct: 6 QAQPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGE--EV 62
Query: 102 VLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
+ +D+G+Y CV + GS + + +
Sbjct: 63 EVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 78.3 bits (193), Expect = 9e-18
Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 3/90 (3%)
Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVL 287
P S G ++ C + + W DG L + + + +
Sbjct: 8 QPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGE--EVEV 64
Query: 288 NGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
+D+G+Y CV + GS + + +
Sbjct: 65 RDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 42.9 bits (101), Expect = 2e-05
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV 42
+ E+ + G Y+CV +P+G V V
Sbjct: 58 TGEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 85.0 bits (210), Expect = 5e-19
Identities = 38/186 (20%), Positives = 64/186 (34%), Gaps = 29/186 (15%)
Query: 145 PFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVE------------------DRNH 185
P + G SV +P + P GE + I+W +E +
Sbjct: 5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRL 64
Query: 186 KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPI-FIQRPVSTTYSTG 244
++ SL+L N+ +D+G YR S ++ L + + +
Sbjct: 65 NFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMT 124
Query: 245 STSRITCLVE-GHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 303
+TC VE W GN+L S ++T V R S Y C+A+
Sbjct: 125 CELHLTCSVEDADDNVSFRWEALGNTLSSQPNLT--------VSWDPRISSEQDYTCIAE 176
Query: 304 NSEGSA 309
N+ +
Sbjct: 177 NAVSNL 182
Score = 63.9 bits (155), Expect = 1e-11
Identities = 24/119 (20%), Positives = 38/119 (31%), Gaps = 11/119 (9%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRG--DLHVTVNAPPIFIQRPVSTTYSTGSTSRITC 67
L +S ++ E G Y L + I + + +TC
Sbjct: 72 LQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTC 131
Query: 68 LVE-GHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA 125
VE W GN+L S ++T V R S Y C+A+N+ +
Sbjct: 132 SVEDADDNVSFRWEALGNTLSSQPNLT--------VSWDPRISSEQDYTCIAENAVSNL 182
Score = 52.3 bits (125), Expect = 8e-08
Identities = 22/161 (13%), Positives = 39/161 (24%), Gaps = 25/161 (15%)
Query: 70 EGHPLPQMTWFHDGNSL-------DSDDHVTYEHDGFV----------LVLNGVRESDAG 112
G + +TW + SL + + L L+ ++ D G
Sbjct: 24 AGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTG 83
Query: 113 VYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK-PDGEPLPRIS 171
Y + S +RI V + + + C D +
Sbjct: 84 SYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFR 143
Query: 172 WSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 212
W N + ++ Y C A N
Sbjct: 144 WEALGNTLSSQPNLTVS-------WDPRISSEQDYTCIAEN 177
Score = 52.3 bits (125), Expect = 8e-08
Identities = 22/161 (13%), Positives = 39/161 (24%), Gaps = 25/161 (15%)
Query: 254 EGHPLPQMTWFHDGNSL-------DSDDHVTYEHDGFV----------LVLNGVRESDAG 296
G + +TW + SL + + L L+ ++ D G
Sbjct: 24 AGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTG 83
Query: 297 VYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK-PDGEPLPRIS 355
Y + S +RI V + + + C D +
Sbjct: 84 SYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFR 143
Query: 356 WSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 396
W N + ++ Y C A N
Sbjct: 144 WEALGNTLSSQPNLTVS-------WDPRISSEQDYTCIAEN 177
Score = 46.1 bits (109), Expect = 1e-05
Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 19/87 (21%)
Query: 329 PFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVE------------------DRNH 369
P + G SV +P + P GE + I+W +E +
Sbjct: 5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRL 64
Query: 370 KIHRTGSLRLYNIGPQDSGLYRCTASN 396
++ SL+L N+ +D+G YR S
Sbjct: 65 NFTQSYSLQLSNLKMEDTGSYRAQIST 91
Score = 28.4 bits (63), Expect = 9.1
Identities = 5/27 (18%), Positives = 8/27 (29%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAG 32
V + Y+C+A N
Sbjct: 154 QPNLTVSWDPRISSEQDYTCIAENAVS 180
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 82.1 bits (203), Expect = 6e-19
Identities = 21/90 (23%), Positives = 30/90 (33%), Gaps = 8/90 (8%)
Query: 150 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH--------RTGSLRLYNIGPQ 201
+ IP G P P + W + A E + G L+L N
Sbjct: 13 PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHM 72
Query: 202 DSGLYRCTASNLLGEDVAEGYLTVTGAPPI 231
++G Y A N G+D + G P I
Sbjct: 73 NNGDYTLIAKNEYGKDEKQISAHFMGWPGI 102
Score = 77.1 bits (190), Expect = 3e-17
Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 14/101 (13%)
Query: 42 VNAPP--IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF 99
V+ P F++ P S I V+G+P P + WF++G L+ ++ +
Sbjct: 1 VHFAPTITFLESPTS-----DHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVT 55
Query: 100 -------VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
L L+ + G Y +A+N G E
Sbjct: 56 NHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHF 96
Score = 75.6 bits (186), Expect = 1e-16
Identities = 19/91 (20%), Positives = 30/91 (32%), Gaps = 8/91 (8%)
Query: 334 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH--------RTGSLRLYNIGPQ 385
+ IP G P P + W + A E + G L+L N
Sbjct: 13 PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHM 72
Query: 386 DSGLYRCTASNLLGEDVAEGYLTVTGENSVE 416
++G Y A N G+D + G ++
Sbjct: 73 NNGDYTLIAKNEYGKDEKQISAHFMGWPGID 103
Score = 75.2 bits (185), Expect = 1e-16
Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 13/101 (12%)
Query: 225 VTGAPPI-FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF 283
V AP I F++ P S I V+G+P P + WF++G L+ ++ +
Sbjct: 1 VHFAPTITFLESPTS-----DHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVT 55
Query: 284 -------VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
L L+ + G Y +A+N G E
Sbjct: 56 NHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHF 96
Score = 43.6 bits (103), Expect = 2e-05
Identities = 8/46 (17%), Positives = 14/46 (30%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP 46
T+ L + + G Y+ +A N G + P
Sbjct: 55 TNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWP 100
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 82.0 bits (203), Expect = 7e-19
Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 4/98 (4%)
Query: 215 GEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD 274
LTV P F + + + G+T+ + C + + W+ +L D
Sbjct: 5 SSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGD 62
Query: 275 HVTYEHDGFV--LVLNGVRESDAGVYNCVAQNSEGSAE 310
+ DG L + G+ DAG Y C+ SA
Sbjct: 63 RHSLRQDGARCELQIRGLVAEDAGEYLCMCGKERTSAM 100
Score = 78.2 bits (193), Expect = 1e-17
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 5/102 (4%)
Query: 28 GNPAGVYRGDLHVTVNA-PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL 86
G+ R +TV A P F + + + G+T+ + C + + W+ +L
Sbjct: 1 GSSGSSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKMA--PVEWWKGHETL 58
Query: 87 DSDDHVTYEHDGFV--LVLNGVRESDAGVYNCVAQNSEGSAE 126
D + DG L + G+ DAG Y C+ SA
Sbjct: 59 RDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMCGKERTSAM 100
Score = 73.6 bits (181), Expect = 6e-16
Identities = 21/116 (18%), Positives = 42/116 (36%), Gaps = 10/116 (8%)
Query: 120 NSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEF 179
+S S + AM+ + + + A G++ + C+ + W K
Sbjct: 2 SSGSSGRTSAMLTVRA-LPIKFTEGLRNEEATEGATAVLRCELSKMA--PVEWWKGHETL 58
Query: 180 VEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIF 232
+ H + + G L++ + +D+G Y C G++ LTV P
Sbjct: 59 RDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAMPSGP 110
Score = 69.7 bits (171), Expect = 1e-14
Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 10/111 (9%)
Query: 304 NSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEF 363
+S S + AM+ + + + A G++ + C+ + W K
Sbjct: 2 SSGSSGRTSAMLTVRA-LPIKFTEGLRNEEATEGATAVLRCELSKMA--PVEWWKGHETL 58
Query: 364 VEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
+ H + + G L++ + +D+G Y C G++ LTV
Sbjct: 59 RDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRA 105
Score = 35.4 bits (82), Expect = 0.016
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP 46
L I G+ E G Y C+ G R +TV A P
Sbjct: 75 LQIRGLVAEDAGEYLCMCGK----ERTSAMLTVRAMP 107
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 81.4 bits (201), Expect = 1e-18
Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 9/114 (7%)
Query: 38 LHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHD 97
+ +TV PP + I +V G+P P + W H+G L + E+
Sbjct: 1 VALTVYYPPRVVSLEEPEL---RLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYY 57
Query: 98 G------FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKP 145
L+ N + G Y +A+N G+A P V P
Sbjct: 58 QEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSP 111
Score = 77.2 bits (190), Expect = 5e-17
Identities = 26/113 (23%), Positives = 38/113 (33%), Gaps = 10/113 (8%)
Query: 223 LTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG 282
LTV PP + I +V G+P P + W H+G L + E+
Sbjct: 3 LTVY-YPPRVVSLEEPEL---RLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQ 58
Query: 283 ------FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKP 329
L+ N + G Y +A+N G+A P V P
Sbjct: 59 EGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSP 111
Score = 75.2 bits (185), Expect = 2e-16
Identities = 18/108 (16%), Positives = 28/108 (25%), Gaps = 10/108 (9%)
Query: 131 IRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH-- 188
+ + + PR+V I G P P + W + E + +
Sbjct: 1 VALTVYYPPRVVSLE---EPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYY 57
Query: 189 -----RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPI 231
G L ++G Y A N LG P
Sbjct: 58 QEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFP 105
Score = 74.9 bits (184), Expect = 3e-16
Identities = 21/120 (17%), Positives = 32/120 (26%), Gaps = 14/120 (11%)
Query: 315 IRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH-- 372
+ + + PR+V I G P P + W + E + +
Sbjct: 1 VALTVYYPPRVVSLE---EPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYY 57
Query: 373 -----RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSA 427
G L ++G Y A N LG EP P P+
Sbjct: 58 QEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFL----KEPFPVDEVSPTP 113
Score = 44.0 bits (104), Expect = 2e-05
Identities = 10/54 (18%), Positives = 19/54 (35%)
Query: 2 DDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVST 55
+ S L+ + + G Y+ +A NP G ++ P + T
Sbjct: 59 EGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSPT 112
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 89.8 bits (222), Expect = 2e-18
Identities = 37/312 (11%), Positives = 84/312 (26%), Gaps = 31/312 (9%)
Query: 58 STGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCV 117
S + V PL W G+ + + L ++ + V V
Sbjct: 89 SPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAE-------LAISTFWPNFYQVIFEV 141
Query: 118 AQNSEGSAESVAMIRI--NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD 175
+ ++ +++ + ++ ++ AG C G +
Sbjct: 142 ITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQ 201
Query: 176 EAEFVEDRNHKI------HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAP 229
+ + +I S + N +D+G YRC G ++ V P
Sbjct: 202 GIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEP 261
Query: 230 PIFIQRP-VSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLN 288
P+ I P +++ +T ++ P + + + + D +
Sbjct: 262 PVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQPVDSTSYKIG 321
Query: 289 GVRESDAGVYNCVAQNSEG---SAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK 345
+ + + + A+ P + P + S +I
Sbjct: 322 HLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADP--MRGPRKLEVVEVKSRQI--- 376
Query: 346 PDGEPLPRISWS 357
I W
Sbjct: 377 -------TIRWE 381
Score = 82.5 bits (203), Expect = 3e-16
Identities = 27/186 (14%), Positives = 54/186 (29%), Gaps = 15/186 (8%)
Query: 242 STGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCV 301
S + V PL W G+ + + L ++ + V V
Sbjct: 89 SPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAE-------LAISTFWPNFYQVIFEV 141
Query: 302 AQNSEGSAESVAMIRI--NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD 359
+ ++ +++ + ++ ++ AG C G +
Sbjct: 142 ITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQ 201
Query: 360 EAEFVEDRNHKI------HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGEN 413
+ + +I S + N +D+G YRC G ++ V E
Sbjct: 202 GIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEP 261
Query: 414 SVEPAP 419
V AP
Sbjct: 262 PVPIAP 267
Score = 58.3 bits (140), Expect = 9e-09
Identities = 23/128 (17%), Positives = 34/128 (26%), Gaps = 9/128 (7%)
Query: 9 ELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIF----IQRPVSTTYSTGSTSR 64
EL IS V + Y V V P R + + G +
Sbjct: 124 ELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFAT 183
Query: 65 ITCLVEGHPLPQMTWF---HDGNSLDSDDHVTYEHDGFVLVLN--GVRESDAGVYNCVAQ 119
C G + + D + F+ N + DAG Y C+ +
Sbjct: 184 FQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIR 243
Query: 120 NSEGSAES 127
G S
Sbjct: 244 TEGGVGIS 251
Score = 39.4 bits (91), Expect = 0.007
Identities = 23/178 (12%), Positives = 48/178 (26%), Gaps = 17/178 (9%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYR-GDLHVTVNAPPIFIQRP-VSTTYS 58
T RR + + G+Y C+ GV + V PP+ I P +++ +
Sbjct: 216 TSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGA 275
Query: 59 TGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVA 118
T ++ P + + + + D + + + +
Sbjct: 276 TYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQPVDSTSYKIGHLDPDTEYEISVLL 335
Query: 119 QNSEG---SAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWS 173
+ A+ P + P + S +I I W
Sbjct: 336 TRPGEGGTGSPGPALRTRTKCADP--MRGPRKLEVVEVKSRQI----------TIRWE 381
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 83.0 bits (205), Expect = 2e-18
Identities = 31/189 (16%), Positives = 61/189 (32%), Gaps = 33/189 (17%)
Query: 145 PFDMRAPAGSSVEIPC-KPDGEPLPRISWSKDEAEFV----------------EDRNHKI 187
++ A GS+V + K R++W + + +DR
Sbjct: 6 VPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLD 65
Query: 188 HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTS 247
G+LR+YN+ +D G Y + ED + + V +P+ S +
Sbjct: 66 KTNGALRIYNVSKEDRGDYYMRMLH-ETEDQWKITMEVYEMVS----KPMIY--WECSNA 118
Query: 248 RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEG 307
+TC V ++ + L S T ++ + + C A N
Sbjct: 119 TLTCEVLEGTDVELKLYQGKEHLRSLRQKT---------MSYQWTNLRAPFKCKAVNRVS 169
Query: 308 SAESVAMIR 316
+ ++
Sbjct: 170 QESEMEVVN 178
Score = 63.4 bits (154), Expect = 1e-11
Identities = 18/123 (14%), Positives = 34/123 (27%), Gaps = 15/123 (12%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLV 69
L I V +E G Y + + + V Y S + +TC V
Sbjct: 71 LRIYNVSKEDRGDYYMRMLHETEDQW-KITMEVYEMV-----SKPMIYWECSNATLTCEV 124
Query: 70 EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVA 129
++ + L S T ++ + + C A N +
Sbjct: 125 LEGTDVELKLYQGKEHLRSLRQKT---------MSYQWTNLRAPFKCKAVNRVSQESEME 175
Query: 130 MIR 132
++
Sbjct: 176 VVN 178
Score = 54.5 bits (131), Expect = 1e-08
Identities = 15/146 (10%), Positives = 35/146 (23%), Gaps = 20/146 (13%)
Query: 71 GHPLPQMTWFHDGNSLDSDDH----VTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE 126
+ +F +G + V + L + V + D G Y +
Sbjct: 37 TTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRMLHETEDQW 96
Query: 127 SVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHK 186
+ M P + + S+ + C+ + +
Sbjct: 97 KITMEVYEMVSKPMIYWE--------CSNATLTCEVLEGTDVELKLYQG--------KEH 140
Query: 187 IHRTGSLRLYNIGPQDSGLYRCTASN 212
+ + ++C A N
Sbjct: 141 LRSLRQKTMSYQWTNLRAPFKCKAVN 166
Score = 54.5 bits (131), Expect = 1e-08
Identities = 15/146 (10%), Positives = 35/146 (23%), Gaps = 20/146 (13%)
Query: 255 GHPLPQMTWFHDGNSLDSDDH----VTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAE 310
+ +F +G + V + L + V + D G Y +
Sbjct: 37 TTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRMLHETEDQW 96
Query: 311 SVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHK 370
+ M P + + S+ + C+ + +
Sbjct: 97 KITMEVYEMVSKPMIYWE--------CSNATLTCEVLEGTDVELKLYQG--------KEH 140
Query: 371 IHRTGSLRLYNIGPQDSGLYRCTASN 396
+ + ++C A N
Sbjct: 141 LRSLRQKTMSYQWTNLRAPFKCKAVN 166
Score = 47.2 bits (112), Expect = 4e-06
Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 18/98 (18%)
Query: 329 PFDMRAPAGSSVEIPC-KPDGEPLPRISWSKDEAEFV----------------EDRNHKI 371
++ A GS+V + K R++W + + +DR
Sbjct: 6 VPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLD 65
Query: 372 HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
G+LR+YN+ +D G Y + ED + + V
Sbjct: 66 KTNGALRIYNVSKEDRGDYYMRMLH-ETEDQWKITMEV 102
Score = 32.6 bits (74), Expect = 0.34
Identities = 9/41 (21%), Positives = 12/41 (29%), Gaps = 2/41 (4%)
Query: 5 RSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAP 45
RS + +S + C A N VN P
Sbjct: 142 RSLRQKTMSYQWTNLRAPFKCKAVNRVSQESE--MEVVNCP 180
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 80.5 bits (199), Expect = 3e-18
Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 8/118 (6%)
Query: 118 AQNSEGSAESVAMIRINGHRAPRLVVKPF---DMRAPAGSSVEIPCKPDGEPLPRISWSK 174
+ S G+ IR P++ + G + + G+P P++ W+K
Sbjct: 2 SSGSSGTLAQPVTIR-EIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTK 60
Query: 175 DEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAP 229
A ++ + + + DSG Y + +D A + V
Sbjct: 61 GGAP-LDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA 117
Score = 80.1 bits (198), Expect = 4e-18
Identities = 25/112 (22%), Positives = 39/112 (34%), Gaps = 5/112 (4%)
Query: 27 AGNPAGVYRGDLHVT--VNAPPIFIQRPVSTTYS--TGSTSRITCLVEGHPLPQMTWFHD 82
+ +G + + P I + R + TY G + +G P PQ+ W
Sbjct: 2 SSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKG 61
Query: 83 GNSLDSDD-HVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
G LD+ HV V + SD+G Y Q + IR+
Sbjct: 62 GAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRV 113
Score = 79.7 bits (197), Expect = 5e-18
Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 3/93 (3%)
Query: 228 APPIFIQRPVSTTYS--TGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD-HVTYEHDGFV 284
P I + R + TY G + +G P PQ+ W G LD+ HV V
Sbjct: 21 PPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTV 80
Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
+ SD+G Y Q + IR+
Sbjct: 81 FFVRQAARSDSGEYELSVQIENMKDTATIRIRV 113
Score = 78.2 bits (193), Expect = 2e-17
Identities = 19/115 (16%), Positives = 38/115 (33%), Gaps = 8/115 (6%)
Query: 302 AQNSEGSAESVAMIRINGHRAPRLVVKPF---DMRAPAGSSVEIPCKPDGEPLPRISWSK 358
+ S G+ IR P++ + G + + G+P P++ W+K
Sbjct: 2 SSGSSGTLAQPVTIR-EIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTK 60
Query: 359 DEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
A ++ + + + DSG Y + +D A + V
Sbjct: 61 GGAP-LDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVV 114
Score = 45.8 bits (109), Expect = 4e-06
Identities = 5/40 (12%), Positives = 8/40 (20%)
Query: 7 STELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP 46
T + R G Y + + V
Sbjct: 78 DTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA 117
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 78.9 bits (195), Expect = 7e-18
Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
Query: 224 TVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF 283
+ + P I+ + G + C + P + W D ++ +G
Sbjct: 3 SGSSGPAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGT 61
Query: 284 V--LVLNGVRESDAGVYNCVAQNSEGSAE 310
+ LV+ G DAG Y C + S+ +A
Sbjct: 62 MAMLVIRGASLKDAGEYTCEVEASKSTAS 90
Score = 77.3 bits (191), Expect = 2e-17
Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 3/85 (3%)
Query: 44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV--L 101
P I+ + G + C + P + W D ++ +G + L
Sbjct: 7 GPAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAML 65
Query: 102 VLNGVRESDAGVYNCVAQNSEGSAE 126
V+ G DAG Y C + S+ +A
Sbjct: 66 VIRGASLKDAGEYTCEVEASKSTAS 90
Score = 65.4 bits (160), Expect = 4e-13
Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 8/95 (8%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRL 195
++ D G VE+ C+ P + W KD + + + + G L +
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVI 67
Query: 196 YNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPP 230
+D+G Y C A L V
Sbjct: 68 RGASLKDAGEYTCEVEASKST--AS--LHVEEKAS 98
Score = 63.9 bits (156), Expect = 1e-12
Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 9/98 (9%)
Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRL 379
++ D G VE+ C+ P + W KD + + + + G L +
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVI 67
Query: 380 YNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEP 417
+D+G Y C A L V E + P
Sbjct: 68 RGASLKDAGEYTCEVEASKST--AS--LHVE-EKASGP 100
Score = 38.4 bits (90), Expect = 0.001
Identities = 8/37 (21%), Positives = 11/37 (29%), Gaps = 4/37 (10%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP 46
LVI G + G Y+C + V
Sbjct: 65 LVIRGASLKDAGEYTCEVEASKSTAS----LHVEEKA 97
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 82.0 bits (202), Expect = 9e-18
Identities = 27/195 (13%), Positives = 56/195 (28%), Gaps = 28/195 (14%)
Query: 150 APAGSSVEIPCKPDGEPL----PRISWSKDEAEFVEDRNHKIH-------RT-------G 191
+ C + RI W K++ + + ++ RT
Sbjct: 6 KEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNL 65
Query: 192 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGY---LTVTGAPPIFIQRPVSTTYSTGSTSR 248
S+ + + P D G Y C + + +T++ T + R
Sbjct: 66 SIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRR 125
Query: 249 ITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYEHDGFVL-----VLNGVRESDAGVYNCVA 302
I C G P P ++W +G L++ + + L L+ + + C+
Sbjct: 126 IICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLD-FNMTTNHSFMCLI 184
Query: 303 QNSEGSAESVAMIRI 317
+
Sbjct: 185 KYGHLRVNQTFNWNT 199
Score = 62.3 bits (151), Expect = 4e-11
Identities = 21/135 (15%), Positives = 42/135 (31%), Gaps = 13/135 (9%)
Query: 10 LVISGVQREHGGRYSCVAGNPAG-----VYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSR 64
+VI ++ G Y CV + ++ ++V A T + R
Sbjct: 67 IVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFE-IPTSNIRR 125
Query: 65 ITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYEHDGFVL-----VLNGVRESDAGVYNCVA 118
I C G P P ++W +G L++ + + L L+ + + C+
Sbjct: 126 IICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLD-FNMTTNHSFMCLI 184
Query: 119 QNSEGSAESVAMIRI 133
+
Sbjct: 185 KYGHLRVNQTFNWNT 199
Score = 54.6 bits (131), Expect = 2e-08
Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 12/126 (9%)
Query: 99 FVLVLNGVRESDAGVYNCVAQNSEGS---AESVAMIRINGHRAPRLVVKPFDMRAPAGSS 155
+V+ +R SD G Y CV E E +A + ++ D P +
Sbjct: 65 LSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFP-TPSISDFEIPTSNI 123
Query: 156 VEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIG------PQDSGLYRC 208
I C G P P +SW ++ E + N + + LY + + + C
Sbjct: 124 RRIICSTSGGFPEPHLSWLENGEE-LNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMC 182
Query: 209 TASNLL 214
Sbjct: 183 LIKYGH 188
Score = 47.3 bits (112), Expect = 5e-06
Identities = 14/95 (14%), Positives = 27/95 (28%), Gaps = 18/95 (18%)
Query: 334 APAGSSVEIPCKPDGEPL----PRISWSKDEAEFVEDRNHKIH-------RT-------G 375
+ C + RI W K++ + + ++ RT
Sbjct: 6 KEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNL 65
Query: 376 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
S+ + + P D G Y C + +L
Sbjct: 66 SIVILALRPSDEGTYECVVLKYEKDAFKREHLAEV 100
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 78.5 bits (194), Expect = 9e-18
Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 224 TVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF 283
+ + P F + G + + C++ P + W + N L D + +G
Sbjct: 3 SGSSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGA 61
Query: 284 V--LVLNGVRESDAGVYNCVAQNSEGSAE 310
+ LV+ +R D+G Y+C + SA
Sbjct: 62 MLELVVRNLRPQDSGRYSCSFGDQTTSAT 90
Score = 77.4 bits (191), Expect = 3e-17
Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV--L 101
P F + G + + C++ P + W + N L D + +G + L
Sbjct: 7 GPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLEL 65
Query: 102 VLNGVRESDAGVYNCVAQNSEGSAE 126
V+ +R D+G Y+C + SA
Sbjct: 66 VVRNLRPQDSGRYSCSFGDQTTSAT 90
Score = 67.7 bits (166), Expect = 6e-14
Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 8/98 (8%)
Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLR 194
R D+ G + + C P + W + + + G L
Sbjct: 8 PVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELV 66
Query: 195 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIF 232
+ N+ PQDSG Y C+ G+ LTVT P
Sbjct: 67 VRNLRPQDSGRYSCSF----GDQTTSATLTVTALPSGP 100
Score = 63.9 bits (156), Expect = 1e-12
Identities = 23/104 (22%), Positives = 36/104 (34%), Gaps = 12/104 (11%)
Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLR 378
R D+ G + + C P + W + + + G L
Sbjct: 8 PVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELV 66
Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTS 422
+ N+ PQDSG Y C+ G+ LTVT P+ +S
Sbjct: 67 VRNLRPQDSGRYSCSF----GDQTTSATLTVTA----LPSGPSS 102
Score = 34.6 bits (80), Expect = 0.022
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 9 ELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP 46
ELV+ ++ + GRYSC G+ +TV A P
Sbjct: 64 ELVVRNLRPQDSGRYSCSFGDQTTSAT----LTVTALP 97
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 78.2 bits (193), Expect = 1e-17
Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Query: 44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV--L 101
F ++P S + GS + E ++ W G+ + + + +G L
Sbjct: 7 PVSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTRHTL 65
Query: 102 VLNGVRESDAGVYNCVAQNSEGSAE 126
+ V +D G Y +A +S+ +
Sbjct: 66 TVREVGPADQGSYAVIAGSSKVKFD 90
Score = 78.2 bits (193), Expect = 1e-17
Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV--L 285
F ++P S + GS + E ++ W G+ + + + +G L
Sbjct: 7 PVSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTRHTL 65
Query: 286 VLNGVRESDAGVYNCVAQNSEGSAE 310
+ V +D G Y +A +S+ +
Sbjct: 66 TVREVGPADQGSYAVIAGSSKVKFD 90
Score = 65.8 bits (161), Expect = 2e-13
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 8/91 (8%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRL 195
KP + AGS + + ++ W + ++ + + G +L +
Sbjct: 9 SAFSKKPRSVEVAAGSPAVFEAETERAG-VKVRWQRGGSDISASNKYGLATEGTRHTLTV 67
Query: 196 YNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 226
+GP D G Y A G + L V
Sbjct: 68 REVGPADQGSYAVIA----GSSKVKFDLKVI 94
Score = 65.8 bits (161), Expect = 2e-13
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 8/91 (8%)
Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLRL 379
KP + AGS + + ++ W + ++ + + G +L +
Sbjct: 9 SAFSKKPRSVEVAAGSPAVFEAETERAG-VKVRWQRGGSDISASNKYGLATEGTRHTLTV 67
Query: 380 YNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
+GP D G Y A G + L V
Sbjct: 68 REVGPADQGSYAVIA----GSSKVKFDLKVI 94
Score = 33.9 bits (78), Expect = 0.037
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 10 LVISGVQREHGGRYSCVAGN 29
L + V G Y+ +AG+
Sbjct: 65 LTVREVGPADQGSYAVIAGS 84
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 77.4 bits (191), Expect = 2e-17
Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 7/98 (7%)
Query: 215 GEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD 274
G + G + P G+++ ++C V ++TW+ DG L S
Sbjct: 1 GSSGSSGKVVFAKEQPA----HREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSS 55
Query: 275 HVTYEHDGFV--LVLNGVRESDAGVYNCVAQNSEGSAE 310
V E G LV+ +++AG Y+C A + S
Sbjct: 56 KVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQLSFR 93
Score = 73.6 bits (181), Expect = 5e-16
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV--LV 102
G+++ ++C V ++TW+ DG L S V E G LV
Sbjct: 11 FAKEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLV 69
Query: 103 LNGVRESDAGVYNCVAQNSEGSAE 126
+ +++AG Y+C A + S
Sbjct: 70 VQQAGQAEAGEYSCEAGGQQLSFR 93
Score = 65.1 bits (159), Expect = 4e-13
Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 13/98 (13%)
Query: 323 PRLVVKPF-----DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG-- 375
++V +++A AG+S + C+ + ++W KD + ++ G
Sbjct: 7 GKVVFAKEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGCT 65
Query: 376 -SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGE 412
L + G ++G Y C A G L V G+
Sbjct: 66 RRLVVQQAGQAEAGEYSCEA----GGQQLSFRLQVAGQ 99
Score = 64.7 bits (158), Expect = 7e-13
Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 13/97 (13%)
Query: 139 PRLVVKPF-----DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG-- 191
++V +++A AG+S + C+ + ++W KD + ++ G
Sbjct: 7 GKVVFAKEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGCT 65
Query: 192 -SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 227
L + G ++G Y C A G L V G
Sbjct: 66 RRLVVQQAGQAEAGEYSCEA----GGQQLSFRLQVAG 98
Score = 34.3 bits (79), Expect = 0.027
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 10 LVISGVQREHGGRYSCVAGN 29
LV+ + G YSC AG
Sbjct: 68 LVVQQAGQAEAGEYSCEAGG 87
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 77.4 bits (191), Expect = 2e-17
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 7/93 (7%)
Query: 224 TVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD----HVTYE 279
+ + P + + G + V Q+ W +G L +D ++
Sbjct: 3 SGSSGPVLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFK 61
Query: 280 HDGFV--LVLNGVRESDAGVYNCVAQNSEGSAE 310
DG L+ + V + D G Y + + AE
Sbjct: 62 KDGKRHILIFSDVVQEDRGRYQVITNGGQCEAE 94
Score = 75.4 bits (186), Expect = 1e-16
Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 7/89 (7%)
Query: 44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD----HVTYEHDGF 99
P + + G + V Q+ W +G L +D ++ DG
Sbjct: 7 GPVLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGK 65
Query: 100 V--LVLNGVRESDAGVYNCVAQNSEGSAE 126
L+ + V + D G Y + + AE
Sbjct: 66 RHILIFSDVVQEDRGRYQVITNGGQCEAE 94
Score = 53.9 bits (130), Expect = 4e-09
Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 12/94 (12%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH-------RTG 191
+V D + G VE+ + E ++ W K+ E + + K +
Sbjct: 9 VLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRH 67
Query: 192 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
L ++ +D G Y+ + E L V
Sbjct: 68 ILIFSDVVQEDRGRYQVITNG----GQCEAELIV 97
Score = 53.9 bits (130), Expect = 4e-09
Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 12/94 (12%)
Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH-------RTG 375
+V D + G VE+ + E ++ W K+ E + + K +
Sbjct: 9 VLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRH 67
Query: 376 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
L ++ +D G Y+ + E L V
Sbjct: 68 ILIFSDVVQEDRGRYQVITNG----GQCEAELIV 97
Score = 34.2 bits (79), Expect = 0.030
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 10 LVISGVQREHGGRYSCVAGN 29
L+ S V +E GRY +
Sbjct: 69 LIFSDVVQEDRGRYQVITNG 88
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 77.4 bits (191), Expect = 2e-17
Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 3/89 (3%)
Query: 224 TVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF 283
+ + F + + T+ TC HP +TW L + +G
Sbjct: 3 SGSSGANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGL 61
Query: 284 V--LVLNGVRESDAGVYNCVAQNSEGSAE 310
L ++ + ++D+ Y C ++ A+
Sbjct: 62 TLRLTISALEKADSDTYTCDIGQAQSRAQ 90
Score = 76.2 bits (188), Expect = 7e-17
Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 3/85 (3%)
Query: 44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV--L 101
F + + T+ TC HP +TW L + +G L
Sbjct: 7 GANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRL 65
Query: 102 VLNGVRESDAGVYNCVAQNSEGSAE 126
++ + ++D+ Y C ++ A+
Sbjct: 66 TISALEKADSDTYTCDIGQAQSRAQ 90
Score = 69.3 bits (170), Expect = 1e-14
Identities = 21/115 (18%), Positives = 35/115 (30%), Gaps = 16/115 (13%)
Query: 123 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED 182
GS+ S A + +++ + CK P ++W K E
Sbjct: 1 GSSGSSG--------ANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRAS 51
Query: 183 RNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQ 234
H+ + G L + + DS Y C G+ + L V G
Sbjct: 52 GKHQPSQEGLTLRLTISALEKADSDTYTCDI----GQAQSRAQLLVQGRRSGPSS 102
Score = 67.4 bits (165), Expect = 8e-14
Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 16/111 (14%)
Query: 307 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED 366
GS+ S A + +++ + CK P ++W K E
Sbjct: 1 GSSGSSG--------ANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRAS 51
Query: 367 RNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENS 414
H+ + G L + + DS Y C G+ + L V G S
Sbjct: 52 GKHQPSQEGLTLRLTISALEKADSDTYTCDI----GQAQSRAQLLVQGRRS 98
Score = 33.1 bits (76), Expect = 0.093
Identities = 7/41 (17%), Positives = 13/41 (31%), Gaps = 4/41 (9%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQ 50
L IS +++ Y+C G + + V
Sbjct: 65 LTISALEKADSDTYTCDIGQAQSRAQ----LLVQGRRSGPS 101
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 77.0 bits (190), Expect = 3e-17
Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 5/94 (5%)
Query: 37 DLHVTVNAPPIFIQR-PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLD-SDDHVTY 94
+ F ++ + S G R+T + ++ W +G + S +
Sbjct: 7 HSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIF 65
Query: 95 EHDG--FVLVLNGVRESDAGVYNCVAQNSEGSAE 126
E G L ++ +D Y CV + S E
Sbjct: 66 ESIGAKRTLTISQCSLADDAAYQCVVGGEKCSTE 99
Score = 72.8 bits (179), Expect = 1e-15
Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 5/87 (5%)
Query: 228 APPIFIQR-PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLD-SDDHVTYEHDG--F 283
F ++ + S G R+T + ++ W +G + S +E G
Sbjct: 14 KSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKR 72
Query: 284 VLVLNGVRESDAGVYNCVAQNSEGSAE 310
L ++ +D Y CV + S E
Sbjct: 73 TLTISQCSLADDAAYQCVVGGEKCSTE 99
Score = 51.6 bits (124), Expect = 3e-08
Identities = 13/95 (13%), Positives = 26/95 (27%), Gaps = 10/95 (10%)
Query: 137 RAPRLVVK-PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED-RNHKIHRTG--- 191
++ K + G + + + + W K+ E + G
Sbjct: 14 KSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKR 72
Query: 192 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 226
+L + D Y+C G + L V
Sbjct: 73 TLTISQCSLADDAAYQCVV----GGEKCSTELFVK 103
Score = 51.6 bits (124), Expect = 3e-08
Identities = 13/95 (13%), Positives = 26/95 (27%), Gaps = 10/95 (10%)
Query: 321 RAPRLVVK-PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED-RNHKIHRTG--- 375
++ K + G + + + + W K+ E + G
Sbjct: 14 KSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKR 72
Query: 376 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
+L + D Y+C G + L V
Sbjct: 73 TLTISQCSLADDAAYQCVV----GGEKCSTELFVK 103
Score = 34.3 bits (79), Expect = 0.031
Identities = 7/21 (33%), Positives = 7/21 (33%)
Query: 9 ELVISGVQREHGGRYSCVAGN 29
L IS Y CV G
Sbjct: 73 TLTISQCSLADDAAYQCVVGG 93
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 76.7 bits (189), Expect = 4e-17
Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 3/90 (3%)
Query: 224 TVTGAPPIFIQRPVSTTYSTGSTSRITCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDG 282
+ + +R + G + C++ W G ++ S G
Sbjct: 3 SGSSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQG 62
Query: 283 --FVLVLNGVRESDAGVYNCVAQNSEGSAE 310
++LV+ SDAG + A
Sbjct: 63 RKYILVVREAAPSDAGEVVFSVRGLTSKAS 92
Score = 76.3 bits (188), Expect = 5e-17
Identities = 14/86 (16%), Positives = 25/86 (29%), Gaps = 3/86 (3%)
Query: 44 APPIFIQRPVSTTYSTGSTSRITCLV-EGHPLPQMTWFHDGNSLDSDDHVTYEHDG--FV 100
+R + G + C++ W G ++ S G ++
Sbjct: 7 GHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYI 66
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAE 126
LV+ SDAG + A
Sbjct: 67 LVVREAAPSDAGEVVFSVRGLTSKAS 92
Score = 65.9 bits (161), Expect = 3e-13
Identities = 13/100 (13%), Positives = 22/100 (22%), Gaps = 8/100 (8%)
Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTG---S 192
+ + M G S C W+ + R G
Sbjct: 7 GHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYI 66
Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIF 232
L + P D+G + ++ L V
Sbjct: 67 LVVREAAPSDAGEVVFSV----RGLTSKASLIVRERSGPS 102
Score = 61.6 bits (150), Expect = 7e-12
Identities = 13/93 (13%), Positives = 22/93 (23%), Gaps = 8/93 (8%)
Query: 321 RAPRLVVKPFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTG---S 376
+ + M G S C W+ + R G
Sbjct: 7 GHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYI 66
Query: 377 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
L + P D+G + ++ L V
Sbjct: 67 LVVREAAPSDAGEVVFSV----RGLTSKASLIV 95
Score = 35.1 bits (81), Expect = 0.017
Identities = 6/37 (16%), Positives = 9/37 (24%), Gaps = 2/37 (5%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP 46
LV+ G + L V + P
Sbjct: 67 LVVREAAPSDAGEVVFSVRGLTS--KASLIVRERSGP 101
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 76.9 bits (189), Expect = 5e-17
Identities = 30/119 (25%), Positives = 44/119 (36%), Gaps = 12/119 (10%)
Query: 215 GEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQM-TWFHDGNSLDSD 273
G + G LTV G P I + G +I C + P P W N L+S
Sbjct: 1 GSSGSSGTLTVNGPP--IISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESG 58
Query: 274 DHVTYE------HDGF--VLVLNGVRESD-AGVYNCVAQNSEGSAESVAMIRINGHRAP 323
Y +G L ++ + +D +YNC A NS GS + ++ G
Sbjct: 59 TSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMS 117
Score = 76.5 bits (188), Expect = 8e-17
Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 11/111 (9%)
Query: 39 HVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQM-TWFHDGNSLDSDDHVTYE-- 95
+TVN PP I + G +I C + P P W N L+S Y
Sbjct: 8 TLTVNGPP-IISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVE 66
Query: 96 ----HDGF--VLVLNGVRESD-AGVYNCVAQNSEGSAESVAMIRINGHRAP 139
+G L ++ + +D +YNC A NS GS + ++ G
Sbjct: 67 TISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMS 117
Score = 73.8 bits (181), Expect = 7e-16
Identities = 29/119 (24%), Positives = 42/119 (35%), Gaps = 14/119 (11%)
Query: 123 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVE 181
GS+ S + +N P ++ A G +I C P P RI+WS E
Sbjct: 1 GSSGSSGTLTVN---GPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLES 57
Query: 182 DRNHKIH---------RTGSLRLYNIGPQD-SGLYRCTASNLLGEDVAEGYLTVTGAPP 230
+ + +L + NI D +Y CTA N G D L G+
Sbjct: 58 GTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEM 116
Score = 73.8 bits (181), Expect = 7e-16
Identities = 30/123 (24%), Positives = 43/123 (34%), Gaps = 14/123 (11%)
Query: 307 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP-RISWSKDEAEFVE 365
GS+ S + +N P ++ A G +I C P P RI+WS E
Sbjct: 1 GSSGSSGTLTVN---GPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLES 57
Query: 366 DRNHKIH---------RTGSLRLYNIGPQD-SGLYRCTASNLLGEDVAEGYLTVTGENSV 415
+ + +L + NI D +Y CTA N G D L G
Sbjct: 58 GTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMS 117
Query: 416 EPA 418
P+
Sbjct: 118 GPS 120
Score = 39.5 bits (92), Expect = 6e-04
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 1 TDDRRSSTELVISGVQREH-GGRYSCVAGNPAGVYRGDLHVTVNAPPI 47
+ + + L IS + R Y+C A N G + + +
Sbjct: 69 STEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEM 116
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 76.3 bits (188), Expect = 7e-17
Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 224 TVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF 283
+ + P F Q + S G+T+ + C + + + W +L + + DG
Sbjct: 3 SGSSGPARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGT 60
Query: 284 V--LVLNGVRESDAGVYNCVAQNSEGSAE 310
L ++ + +DAG Y+C+ SA
Sbjct: 61 RCELQIHDLSVADAGEYSCMCGQERTSAT 89
Score = 74.3 bits (183), Expect = 3e-16
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV--L 101
P F Q + S G+T+ + C + + + W +L + + DG L
Sbjct: 7 GPARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGTRCEL 64
Query: 102 VLNGVRESDAGVYNCVAQNSEGSAE 126
++ + +DAG Y+C+ SA
Sbjct: 65 QIHDLSVADAGEYSCMCGQERTSAT 89
Score = 70.9 bits (174), Expect = 5e-15
Identities = 18/106 (16%), Positives = 39/106 (36%), Gaps = 9/106 (8%)
Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLR 194
R A G++ + C+ + + W K + + + + G L+
Sbjct: 8 PARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGTRCELQ 65
Query: 195 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTT 240
++++ D+G Y C G++ LTV P F + ++
Sbjct: 66 IHDLSVADAGEYSCMC----GQERTSATLTVRALPARFTEGSGPSS 107
Score = 60.9 bits (148), Expect = 1e-11
Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 9/93 (9%)
Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLR 378
R A G++ + C+ + + W K + + + + G L+
Sbjct: 8 PARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGTRCELQ 65
Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
++++ D+G Y C G++ LTV
Sbjct: 66 IHDLSVADAGEYSCMC----GQERTSATLTVRA 94
Score = 39.3 bits (92), Expect = 6e-04
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 9 ELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRP 52
EL I + G YSC+ G R +TV A P
Sbjct: 63 ELQIHDLSVADAGEYSCMCGQE----RTSATLTVRALPARFTEG 102
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 75.0 bits (185), Expect = 1e-16
Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 3/85 (3%)
Query: 44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV--L 101
A + G T+ + P W G L + DG L
Sbjct: 4 ALIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHIL 62
Query: 102 VLNGVRESDAGVYNCVAQNSEGSAE 126
+L+ + G + A N++ +A
Sbjct: 63 ILHNCQLGMTGEVSFQAANTKSAAN 87
Score = 75.0 bits (185), Expect = 1e-16
Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 3/85 (3%)
Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV--L 285
A + G T+ + P W G L + DG L
Sbjct: 4 ALIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHIL 62
Query: 286 VLNGVRESDAGVYNCVAQNSEGSAE 310
+L+ + G + A N++ +A
Sbjct: 63 ILHNCQLGMTGEVSFQAANTKSAAN 87
Score = 61.2 bits (149), Expect = 1e-11
Identities = 14/93 (15%), Positives = 25/93 (26%), Gaps = 8/93 (8%)
Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SL 193
+ + + G + + EP W + +I G L
Sbjct: 4 ALIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHIL 62
Query: 194 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 226
L+N +G A+N + L V
Sbjct: 63 ILHNCQLGMTGEVSFQAAN----TKSAANLKVK 91
Score = 61.2 bits (149), Expect = 1e-11
Identities = 14/93 (15%), Positives = 25/93 (26%), Gaps = 8/93 (8%)
Query: 321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SL 377
+ + + G + + EP W + +I G L
Sbjct: 4 ALIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHIL 62
Query: 378 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
L+N +G A+N + L V
Sbjct: 63 ILHNCQLGMTGEVSFQAAN----TKSAANLKVK 91
Score = 34.6 bits (80), Expect = 0.021
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 10 LVISGVQREHGGRYSCVAGN 29
L++ Q G S A N
Sbjct: 62 LILHNCQLGMTGEVSFQAAN 81
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 75.5 bits (186), Expect = 1e-16
Identities = 20/115 (17%), Positives = 34/115 (29%), Gaps = 15/115 (13%)
Query: 224 TVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF 283
+ + +Q T + C V W+ +G + +T H G
Sbjct: 3 SGSSGQLEVLQDIADLTVKAAEQAVFKCEV-SDEKVTGKWYKNGVEVRPSKRITISHVGR 61
Query: 284 V--LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPA 336
LV++ VR D G Y V S + +L + P+
Sbjct: 62 FHKLVIDDVRPEDEGDYTFVPDGYALSLSA------------KLNFLEIKVSGPS 104
Score = 74.7 bits (184), Expect = 2e-16
Identities = 20/114 (17%), Positives = 33/114 (28%), Gaps = 15/114 (13%)
Query: 41 TVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV 100
+ +Q T + C V W+ +G + +T H G
Sbjct: 4 GSSGQLEVLQDIADLTVKAAEQAVFKCEV-SDEKVTGKWYKNGVEVRPSKRITISHVGRF 62
Query: 101 --LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPA 152
LV++ VR D G Y V S + +L + P+
Sbjct: 63 HKLVIDDVRPEDEGDYTFVPDGYALSLSA------------KLNFLEIKVSGPS 104
Score = 65.9 bits (161), Expect = 3e-13
Identities = 18/104 (17%), Positives = 29/104 (27%), Gaps = 9/104 (8%)
Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLR 194
++ D+ A C+ E W K+ E + I G L
Sbjct: 8 QLEVLQDIADLTVKAAEQAVFKCEVSDEK-VTGKWYKNGVEVRPSKRITISHVGRFHKLV 66
Query: 195 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVS 238
+ ++ P+D G Y L I + P S
Sbjct: 67 IDDVRPEDEGDYTFVPDGYALS--LSAKLNFL---EIKVSGPSS 105
Score = 65.5 bits (160), Expect = 3e-13
Identities = 16/100 (16%), Positives = 27/100 (27%), Gaps = 6/100 (6%)
Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SLR 378
++ D+ A C+ E W K+ E + I G L
Sbjct: 8 QLEVLQDIADLTVKAAEQAVFKCEVSDEK-VTGKWYKNGVEVRPSKRITISHVGRFHKLV 66
Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPA 418
+ ++ P+D G Y L P+
Sbjct: 67 IDDVRPEDEGDYTFVPDGYALS--LSAKLNFLEIKVSGPS 104
Score = 38.1 bits (89), Expect = 0.002
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVS 54
LVI V+ E G Y+ V A L+ I + P S
Sbjct: 65 LVIDDVRPEDEGDYTFVPDGYALSLSAKLNFL----EIKVSGPSS 105
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 78.2 bits (192), Expect = 2e-16
Identities = 35/215 (16%), Positives = 63/215 (29%), Gaps = 34/215 (15%)
Query: 142 VVKPFDMRAPAGSSVEIPCK-----PDGEPLPRISWSKD--------------------- 175
V P + G SV +PC + + +++W++
Sbjct: 3 VQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESK 62
Query: 176 EAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT-GAPPIFIQ 234
EFV R R SLR++ + +D G Y C + + + A P
Sbjct: 63 RLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTF-PQGSRSVDIWLRVLAKPQNTA 121
Query: 235 RPVSTTYSTGSTSRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYEHDGFV-----LVLN 288
+ C+ G P Q+TW D + V G V +L
Sbjct: 122 EVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILV 181
Query: 289 GVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAP 323
+ D C ++ + + + +
Sbjct: 182 PSSQVDGKQVTCKVEHESFEKPQLLTVSLTVYYPH 216
Score = 75.5 bits (185), Expect = 2e-15
Identities = 25/137 (18%), Positives = 43/137 (31%), Gaps = 7/137 (5%)
Query: 10 LVISGVQREHGGRYSC-VAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCL 68
L + G++ E G Y+C P G D+ + V A P + C+
Sbjct: 80 LRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCV 139
Query: 69 VEG-HPLPQMTWFHDGNSLDSDDHVTYEHDGFV-----LVLNGVRESDAGVYNCVAQNSE 122
G P Q+TW D + V G V +L + D C ++
Sbjct: 140 STGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEHES 199
Query: 123 GSAESVAMIRINGHRAP 139
+ + + +
Sbjct: 200 FEKPQLLTVSLTVYYPH 216
Score = 53.9 bits (129), Expect = 4e-08
Identities = 35/223 (15%), Positives = 59/223 (26%), Gaps = 38/223 (17%)
Query: 47 IFIQRPVSTTYSTGSTSRITCLVEGHPLP-----QMTWFHDGNSL--------------- 86
+ +Q P G + + C ++ + Q+TW G S
Sbjct: 1 VVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE 60
Query: 87 -----DSDDHVTYEHDGFVLVLNGVRESDAGVYNC-VAQNSEGSAESVAMIRINGHRAPR 140
+ E L + G+R D G Y C +GS +R+ P+
Sbjct: 61 SKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLA--KPQ 118
Query: 141 LVVKPFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTG------SL 193
+ ++ C G P +I+W D + +G
Sbjct: 119 NTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLW 178
Query: 194 RLYNIGPQDSGLYRCTASN--LLGEDVAEGYLTVTGAPPIFIQ 234
L D C + + LTV P
Sbjct: 179 ILVPSSQVDGKQVTCKVEHESFEKPQLLTVSLTVY-YPHHHHH 220
Score = 52.0 bits (124), Expect = 2e-07
Identities = 31/199 (15%), Positives = 54/199 (27%), Gaps = 35/199 (17%)
Query: 231 IFIQRPVSTTYSTGSTSRITCLVEGHPLP-----QMTWFHDGNSL--------------- 270
+ +Q P G + + C ++ + Q+TW G S
Sbjct: 1 VVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE 60
Query: 271 -----DSDDHVTYEHDGFVLVLNGVRESDAGVYNC-VAQNSEGSAESVAMIRINGHRAPR 324
+ E L + G+R D G Y C +GS +R+ P+
Sbjct: 61 SKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLA--KPQ 118
Query: 325 LVVKPFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTG------SL 377
+ ++ C G P +I+W D + +G
Sbjct: 119 NTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLW 178
Query: 378 RLYNIGPQDSGLYRCTASN 396
L D C +
Sbjct: 179 ILVPSSQVDGKQVTCKVEH 197
Score = 38.9 bits (90), Expect = 0.004
Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 31/127 (24%)
Query: 326 VVKPFDMRAPAGSSVEIPCK-----PDGEPLPRISWSKD--------------------- 359
V P + G SV +PC + + +++W++
Sbjct: 3 VQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESK 62
Query: 360 EAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAP 419
EFV R R SLR++ + +D G Y C + + + V P
Sbjct: 63 RLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVT-FPQGSRSVDIWLR----VLAKP 117
Query: 420 HTSREPS 426
+ E
Sbjct: 118 QNTAEVQ 124
Score = 30.4 bits (68), Expect = 2.2
Identities = 5/46 (10%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 7 STELVISGVQREHGGRYSCVAGNPAGV--YRGDLHVTVNAPPIFIQ 50
++ ++ + G + +C + + + +TV P
Sbjct: 175 TSLWILVPSSQVDGKQVTCKVEHESFEKPQLLTVSLTVYYPHHHHH 220
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 75.4 bits (185), Expect = 3e-16
Identities = 20/117 (17%), Positives = 35/117 (29%), Gaps = 17/117 (14%)
Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPL---PRISWSKDEAEFVE------------- 365
+ KP G + K E L P I W K + +
Sbjct: 7 GILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETF 66
Query: 366 DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTS 422
+R+ +++ T +++ +G YRC + D L V P +
Sbjct: 67 ERHSRVY-TFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNIDSG 122
Score = 75.0 bits (184), Expect = 3e-16
Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 17/110 (15%)
Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPL---PRISWSKDEAEFVE------------- 181
+ KP G + K E L P I W K + +
Sbjct: 7 GILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETF 66
Query: 182 DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPI 231
+R+ +++ T +++ +G YRC + D L V +
Sbjct: 67 ERHSRVY-TFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGT 115
Score = 71.9 bits (176), Expect = 4e-15
Identities = 16/114 (14%), Positives = 37/114 (32%), Gaps = 14/114 (12%)
Query: 41 TVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPL---PQMTWFHDGN---SLDSDDHVTY 94
+ ++ +FI++P T G V+ L P + WF + + H+
Sbjct: 3 SGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQL 62
Query: 95 EHDG--------FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPR 140
+ F + + +++ AG Y C + + ++
Sbjct: 63 KETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTT 116
Score = 71.6 bits (175), Expect = 5e-15
Identities = 16/115 (13%), Positives = 36/115 (31%), Gaps = 14/115 (12%)
Query: 224 TVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPL---PQMTWFHDGN---SLDSDDHVT 277
+ + +FI++P T G V+ L P + WF + + H+
Sbjct: 2 SSGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQ 61
Query: 278 YEHDG--------FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPR 324
+ F + + +++ AG Y C + + ++
Sbjct: 62 LKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTT 116
Score = 40.4 bits (94), Expect = 3e-04
Identities = 7/45 (15%), Positives = 12/45 (26%)
Query: 2 DDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP 46
R + E+ I + G Y C + V+
Sbjct: 69 HSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHEST 113
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 75.0 bits (184), Expect = 3e-16
Identities = 26/104 (25%), Positives = 34/104 (32%), Gaps = 12/104 (11%)
Query: 158 IPCKPDGEPLPRISWSKDEAEFVEDRNHKIH----------RTGSLRLYNIGPQDSGLYR 207
IP DG+P P + W + + E R G LRL ++G Y
Sbjct: 20 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79
Query: 208 CTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITC 251
A+N G+ A P F P T STS
Sbjct: 80 LLAANPFGQASASIMAAFMDNP--FEFNPEDPIPDTNSTSGDPV 121
Score = 70.0 bits (171), Expect = 2e-14
Identities = 26/132 (19%), Positives = 40/132 (30%), Gaps = 19/132 (14%)
Query: 45 PP--IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-- 100
P + + V + I V+G P P + W +G+ L+ + E
Sbjct: 3 MPASVQLHTAVEMHHWC-----IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAAN 57
Query: 101 -------LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAG 153
L LN + G Y +A N G A + M P D
Sbjct: 58 ETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF---MDNPFEFNPEDPIPDTN 114
Query: 154 SSVEIPCKPDGE 165
S+ P + E
Sbjct: 115 STSGDPVEKKDE 126
Score = 70.0 bits (171), Expect = 2e-14
Identities = 26/132 (19%), Positives = 40/132 (30%), Gaps = 19/132 (14%)
Query: 229 PP--IFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-- 284
P + + V + I V+G P P + W +G+ L+ + E
Sbjct: 3 MPASVQLHTAVEMHHWC-----IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAAN 57
Query: 285 -------LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAG 337
L LN + G Y +A N G A + M P D
Sbjct: 58 ETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF---MDNPFEFNPEDPIPDTN 114
Query: 338 SSVEIPCKPDGE 349
S+ P + E
Sbjct: 115 STSGDPVEKKDE 126
Score = 68.4 bits (167), Expect = 6e-14
Identities = 23/106 (21%), Positives = 34/106 (32%), Gaps = 14/106 (13%)
Query: 342 IPCKPDGEPLPRISWSKDEAEFVEDRNHKIH----------RTGSLRLYNIGPQDSGLYR 391
IP DG+P P + W + + E R G LRL ++G Y
Sbjct: 20 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79
Query: 392 CTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTI 437
A+N G+ A P +P S + D +
Sbjct: 80 LLAANPFGQASASIMAAFM----DNPFEFNPEDPIPDTNSTSGDPV 121
Score = 43.8 bits (103), Expect = 2e-05
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITC 67
L ++ + G Y+ +A NP G + P F P T STS
Sbjct: 65 LRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP-FEFNPEDPIPDTNSTSGDPV 121
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 74.4 bits (183), Expect = 3e-16
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 44 APPIFIQRP---VSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV 100
+ P+ I P VS T++T +TC + TW+ DG ++ + + + DG
Sbjct: 6 SGPVHILSPQDKVSLTFTTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKMDGRK 64
Query: 101 --LVLNGVRESDAGVYNCVAQNSEGSAE 126
L+L + D+G + C +
Sbjct: 65 HRLILPEAKVQDSGEFECRTEGVSAFFG 92
Score = 74.4 bits (183), Expect = 3e-16
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 228 APPIFIQRP---VSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV 284
+ P+ I P VS T++T +TC + TW+ DG ++ + + + DG
Sbjct: 6 SGPVHILSPQDKVSLTFTTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKMDGRK 64
Query: 285 --LVLNGVRESDAGVYNCVAQNSEGSAE 310
L+L + D+G + C +
Sbjct: 65 HRLILPEAKVQDSGEFECRTEGVSAFFG 92
Score = 63.2 bits (154), Expect = 2e-12
Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 16/110 (14%)
Query: 319 GHRAPRLVVKP---FDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG 375
G P ++ P + V + C+ +W KD + E + G
Sbjct: 4 GSSGPVHILSPQDKVSLTFTTSERVVLTCELSRVD-FPATWYKDGQKVEESELLVVKMDG 62
Query: 376 ---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTS 422
L L QDSG + C A +TV +P+ +S
Sbjct: 63 RKHRLILPEAKVQDSGEFECRT----EGVSAFFGVTVQ-----DPSGPSS 103
Score = 61.3 bits (149), Expect = 1e-11
Identities = 20/98 (20%), Positives = 30/98 (30%), Gaps = 11/98 (11%)
Query: 135 GHRAPRLVVKP---FDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG 191
G P ++ P + V + C+ +W KD + E + G
Sbjct: 4 GSSGPVHILSPQDKVSLTFTTSERVVLTCELSRVD-FPATWYKDGQKVEESELLVVKMDG 62
Query: 192 ---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 226
L L QDSG + C A +TV
Sbjct: 63 RKHRLILPEAKVQDSGEFECRT----EGVSAFFGVTVQ 96
Score = 38.1 bits (89), Expect = 0.001
Identities = 5/38 (13%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPI 47
L++ + + G + C + + + V + P
Sbjct: 67 LILPEAKVQDSGEFECRTEGVSAFFG--VTVQDPSGPS 102
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 82.2 bits (203), Expect = 3e-16
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 2/105 (1%)
Query: 215 GEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD 274
+ + + + A P FI +P T G ++ C V P +TW D L
Sbjct: 468 EYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSV 527
Query: 275 HVTYEHDGFV--LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
++G L +N V+ D G Y A+NS G+ E + + +
Sbjct: 528 KYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 81.8 bits (202), Expect = 4e-16
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
Query: 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV--LV 102
P FI +P T G ++ C V P +TW D L ++G L
Sbjct: 482 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLT 541
Query: 103 LNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
+N V+ D G Y A+NS G+ E + + +
Sbjct: 542 INRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 72.9 bits (179), Expect = 2e-13
Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 3/111 (2%)
Query: 119 QNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAE 178
++ PR +VKP+ G S C+ P ++W KD+ E
Sbjct: 463 KHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRE 522
Query: 179 FVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 226
+ + G L + + D G Y A N G +L VT
Sbjct: 523 LKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVT 573
Score = 72.9 bits (179), Expect = 2e-13
Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 3/111 (2%)
Query: 303 QNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAE 362
++ PR +VKP+ G S C+ P ++W KD+ E
Sbjct: 463 KHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRE 522
Query: 363 FVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
+ + G L + + D G Y A N G +L VT
Sbjct: 523 LKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVT 573
Score = 32.5 bits (74), Expect = 0.71
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 9 ELVISGVQREHGGRYSCVAGNPAG 32
L I+ V+ + G Y+ A N G
Sbjct: 539 GLTINRVKGDDKGEYTVRAKNSYG 562
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 74.4 bits (183), Expect = 3e-16
Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 6/96 (6%)
Query: 36 GDLHVTVNAPPIFIQRP---VSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHV 92
G + +I P V +TC + P ++ W DG + +
Sbjct: 1 GSSGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPAL 59
Query: 93 TYEHDG--FVLVLNGVRESDAGVYNCVAQNSEGSAE 126
+ + LVL V+ D+G Y C + S
Sbjct: 60 LLQKEDTVRRLVLPAVQLEDSGEYLCEIDDESASFT 95
Score = 70.2 bits (172), Expect = 9e-15
Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 6/88 (6%)
Query: 228 APPIFIQRP---VSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG-- 282
+I P V +TC + P ++ W DG + + + +
Sbjct: 9 DVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTV 67
Query: 283 FVLVLNGVRESDAGVYNCVAQNSEGSAE 310
LVL V+ D+G Y C + S
Sbjct: 68 RRLVLPAVQLEDSGEYLCEIDDESASFT 95
Score = 65.9 bits (161), Expect = 3e-13
Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 17/118 (14%)
Query: 123 GSAESVAMIRINGHRAPRLVVKP---FDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEF 179
GS+ S +G +V P + A V + C+ P + W+KD E
Sbjct: 1 GSSGS------SGTDVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEV 53
Query: 180 VEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQ 234
VE + + L L + +DSG Y C ++ A +TVT P I
Sbjct: 54 VESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEI----DDESASFTVTVTEPPVRIIY 107
Score = 59.8 bits (145), Expect = 4e-11
Identities = 30/128 (23%), Positives = 46/128 (35%), Gaps = 22/128 (17%)
Query: 307 GSAESVAMIRINGHRAPRLVVKP---FDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEF 363
GS+ S +G +V P + A V + C+ P + W+KD E
Sbjct: 1 GSSGS------SGTDVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEV 53
Query: 364 VEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPH 420
VE + + L L + +DSG Y C ++ A +TVT EP
Sbjct: 54 VESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEI----DDESASFTVTVT-----EPPVR 104
Query: 421 TSREPSAS 428
+S
Sbjct: 105 IIYSGPSS 112
Score = 40.9 bits (96), Expect = 2e-04
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 9 ELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRP 52
LV+ VQ E G Y C + + + VTV PP+ I
Sbjct: 69 RLVLPAVQLEDSGEYLCEIDDESASFT----VTVTEPPVRIIYS 108
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 80.6 bits (199), Expect = 5e-16
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 5/98 (5%)
Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFV----EDRNHKIHRTGS 192
AP +V P D+ G + E+ C+ L +SW + + G+
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGT 398
Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPP 230
L N+ QD+G+Y C SN +G A L VTG
Sbjct: 399 LNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTHH 436
Score = 76.3 bits (188), Expect = 1e-14
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 5/95 (5%)
Query: 321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFV----EDRNHKIHRTGS 376
AP +V P D+ G + E+ C+ L +SW + + G+
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGT 398
Query: 377 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
L N+ QD+G+Y C SN +G A L VTG
Sbjct: 399 LNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTG 433
Score = 66.7 bits (163), Expect = 1e-11
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 6/95 (6%)
Query: 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDS----DDHVTYEHDGFV 100
P+ ++ P + G + + C L ++W ++ + + DG
Sbjct: 341 APVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDG-T 398
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 135
L V D G+Y C+ NS G+ + A + + G
Sbjct: 399 LNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTG 433
Score = 66.7 bits (163), Expect = 1e-11
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 6/95 (6%)
Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDS----DDHVTYEHDGFV 284
P+ ++ P + G + + C L ++W ++ + + DG
Sbjct: 341 APVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDG-T 398
Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 319
L V D G+Y C+ NS G+ + A + + G
Sbjct: 399 LNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTG 433
Score = 42.4 bits (100), Expect = 5e-04
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP 46
L + V + G Y+C+ N G + V
Sbjct: 399 LNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTH 435
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 78.8 bits (194), Expect = 7e-16
Identities = 46/252 (18%), Positives = 73/252 (28%), Gaps = 28/252 (11%)
Query: 2 DDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRG-------DLHVTVNAPPIFIQRPVS 54
R +S V H G Y+C +P + VT N +
Sbjct: 68 HGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPG 127
Query: 55 TTYSTGSTSRITCLVEGHPLPQM-TWFHDGNSLDSDDHVTYEHDGF---VLVLNGVRESD 110
+G + C + + +G S D V HDG + + +
Sbjct: 128 PLVKSGERVILQC--WSDIMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLAL 185
Query: 111 AGVYNCVAQNSEGSAESVA-----MIRI-NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDG 164
AG Y C + + A I + + P L +P AG SV + C
Sbjct: 186 AGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPK-VQAGESVTLSCSSR- 243
Query: 165 EPLPRISWSKDEAEFVEDRNHKIHRTGSLR-LYNIGP-QDSGLYRCTASNLLGEDVAEGY 222
S++ + + + +GP G YRC S
Sbjct: 244 SSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPATHGGTYRCFGSFRHSPYEWSDP 303
Query: 223 -----LTVTGAP 229
++VTG P
Sbjct: 304 SDPLLVSVTGNP 315
Score = 71.4 bits (175), Expect = 2e-13
Identities = 45/264 (17%), Positives = 78/264 (29%), Gaps = 24/264 (9%)
Query: 151 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTA 210
P G V + C K++ + + +I + S + + +G Y C
Sbjct: 36 PRGGHVTLRCHYRH-RFNNFMLYKEDRIHIPIFHGRIFQE-SFNMSPVTTAHAGNYTCRG 93
Query: 211 SNLLGEDVAEGY-----LTVTGA-PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQM-TW 263
S+ + VTG + +G + C + +
Sbjct: 94 SHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQC--WSDIMFEHFFL 151
Query: 264 FHDGNSLDSDDHVTYEHDGF---VLVLNGVRESDAGVYNCVAQNSEGSAESVA-----MI 315
+G S D V HDG + + + AG Y C + + A I
Sbjct: 152 HKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDI 211
Query: 316 RI-NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT 374
+ + P L +P AG SV + C S++
Sbjct: 212 VVTGPYEKPSLSAQPGPK-VQAGESVTLSCSSR-SSYDMYHLSREGGAHERRLPAVRKVN 269
Query: 375 GSLR-LYNIGP-QDSGLYRCTASN 396
+ + + +GP G YRC S
Sbjct: 270 RTFQADFPLGPATHGGTYRCFGSF 293
Score = 56.0 bits (135), Expect = 2e-08
Identities = 38/189 (20%), Positives = 61/189 (32%), Gaps = 24/189 (12%)
Query: 223 LTVTGAPPIFIQRPV-----STTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVT 277
+ G +P S G + C H + + H
Sbjct: 16 GSHMGGQD----KPFLSAWPSAVVPRGGHVTLRCHYR-HRFNNFMLYKEDRIHIPIFHGR 70
Query: 278 YEHDGFVLVLNGVRESDAGVYNCVAQNSE----GSAES--VAMIRINGHRAPRLVVKPFD 331
+ F + + V + AG Y C + SA S V ++ HR P L+ P
Sbjct: 71 IFQESFNM--SPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGP 128
Query: 332 MRAPAGSSVEIPCKPDGEPLPRISWSKD-EAEFVEDRNHKIHRTGSLRLYNIGP---QDS 387
+ +G V + C D K+ ++ +IH S ++IGP +
Sbjct: 129 L-VKSGERVILQCWSDIMF-EHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALA 186
Query: 388 GLYRCTASN 396
G YRC S
Sbjct: 187 GTYRCYGSV 195
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 73.2 bits (179), Expect = 1e-15
Identities = 27/110 (24%), Positives = 36/110 (32%), Gaps = 13/110 (11%)
Query: 38 LHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMT--WFHDGNSLDSDDHVTYE 95
P +P + + GS TC MT W D +L + Y
Sbjct: 3 FVCDDFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYA 62
Query: 96 HDGF----------VLVLNGVRESDAGVYNCVAQNSEGSAES-VAMIRIN 134
H +L L V + G Y CV N GS+ S A + IN
Sbjct: 63 HLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTIN 112
Score = 72.4 bits (177), Expect = 2e-15
Identities = 27/102 (26%), Positives = 36/102 (35%), Gaps = 13/102 (12%)
Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMT--WFHDGNSLDSDDHVTYEHDGF---- 283
P +P + + GS TC MT W D +L + Y H
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 284 ------VLVLNGVRESDAGVYNCVAQNSEGSAES-VAMIRIN 318
+L L V + G Y CV N GS+ S A + IN
Sbjct: 71 LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTIN 112
Score = 64.3 bits (156), Expect = 1e-12
Identities = 23/101 (22%), Positives = 32/101 (31%), Gaps = 14/101 (13%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLP--RISWSKDEAEFVEDRNHKIHR------- 189
P++ V+P A GS V C +W D +
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 190 ----TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG-YLTV 225
T LRL N+ G Y+C SN G + LT+
Sbjct: 71 LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
Score = 64.3 bits (156), Expect = 1e-12
Identities = 23/101 (22%), Positives = 32/101 (31%), Gaps = 14/101 (13%)
Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLP--RISWSKDEAEFVEDRNHKIHR------- 373
P++ V+P A GS V C +W D +
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 374 ----TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG-YLTV 409
T LRL N+ G Y+C SN G + LT+
Sbjct: 71 LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
Score = 35.4 bits (81), Expect = 0.014
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 7 STELVISGVQREHGGRYSCVAGNPAG-VYRGDLHVTVN 43
+T L + V+ G Y CV N G Y +T+N
Sbjct: 75 TTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTIN 112
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 72.4 bits (178), Expect = 1e-15
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 4/86 (4%)
Query: 44 APPIFIQR-PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-- 100
+ F + + G R + P ++ W+ +G + +EH G
Sbjct: 6 SGAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRI 64
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAE 126
L +N + +D Y A + + S E
Sbjct: 65 LFINNCQMTDDSEYYVTAGDEKCSTE 90
Score = 72.4 bits (178), Expect = 1e-15
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 4/86 (4%)
Query: 228 APPIFIQR-PVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV-- 284
+ F + + G R + P ++ W+ +G + +EH G
Sbjct: 6 SGAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRI 64
Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAE 310
L +N + +D Y A + + S E
Sbjct: 65 LFINNCQMTDDSEYYVTAGDEKCSTE 90
Score = 58.9 bits (143), Expect = 6e-11
Identities = 20/112 (17%), Positives = 30/112 (26%), Gaps = 18/112 (16%)
Query: 123 GSAESVAMIRINGHRAPRLVVKPFDM-RAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVE 181
GS+ S + G V + +P + W K+ E
Sbjct: 1 GSSGS---------SGAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRP 50
Query: 182 DRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPP 230
+ G L + N D Y TA G++ L V P
Sbjct: 51 STKYIFEHKGCQRILFINNCQMTDDSEYYVTA----GDEKCSTELFVRSGPS 98
Score = 55.1 bits (133), Expect = 2e-09
Identities = 19/108 (17%), Positives = 29/108 (26%), Gaps = 18/108 (16%)
Query: 307 GSAESVAMIRINGHRAPRLVVKPFDM-RAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVE 365
GS+ S + G V + +P + W K+ E
Sbjct: 1 GSSGS---------SGAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRP 50
Query: 366 DRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
+ G L + N D Y TA G++ L V
Sbjct: 51 STKYIFEHKGCQRILFINNCQMTDDSEYYVTA----GDEKCSTELFVR 94
Score = 36.6 bits (85), Expect = 0.004
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 4/37 (10%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP 46
L I+ Q Y AG+ + + V + P
Sbjct: 65 LFINNCQMTDDSEYYVTAGDE----KCSTELFVRSGP 97
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 71.6 bits (176), Expect = 2e-15
Identities = 12/88 (13%), Positives = 25/88 (28%), Gaps = 4/88 (4%)
Query: 224 TVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF 283
+ + + T + G + C + + W +G + D + G
Sbjct: 2 SSGSSGLKILTPLTDQTVNLGKEICLKCEISENIPG--KWTKNGLPVQESDRLKVVQKGR 59
Query: 284 V--LVLNGVRESDAGVYNCVAQNSEGSA 309
+ LV+ D G Y +
Sbjct: 60 IHKLVIANALTEDEGDYVFAPDAYNVTL 87
Score = 70.4 bits (173), Expect = 6e-15
Identities = 12/84 (14%), Positives = 24/84 (28%), Gaps = 4/84 (4%)
Query: 44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFV--L 101
+ + T + G + C + + W +G + D + G + L
Sbjct: 6 SGLKILTPLTDQTVNLGKEICLKCEISENIPG--KWTKNGLPVQESDRLKVVQKGRIHKL 63
Query: 102 VLNGVRESDAGVYNCVAQNSEGSA 125
V+ D G Y +
Sbjct: 64 VIANALTEDEGDYVFAPDAYNVTL 87
Score = 64.7 bits (158), Expect = 7e-13
Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 7/98 (7%)
Query: 135 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG--- 191
G +++ D G + + C+ + W+K+ E K+ + G
Sbjct: 4 GSSGLKILTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQKGRIH 61
Query: 192 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAP 229
L + N +D G Y + V P
Sbjct: 62 KLVIANALTEDEGDYVFAPDA--YNVTLPAKVHVISGP 97
Score = 62.0 bits (151), Expect = 5e-12
Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 7/95 (7%)
Query: 319 GHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG--- 375
G +++ D G + + C+ + W+K+ E K+ + G
Sbjct: 4 GSSGLKILTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQKGRIH 61
Query: 376 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
L + N +D G Y + V
Sbjct: 62 KLVIANALTEDEGDYVFAPDA--YNVTLPAKVHVI 94
Score = 34.2 bits (79), Expect = 0.031
Identities = 10/37 (27%), Positives = 12/37 (32%), Gaps = 2/37 (5%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP 46
LVI+ E G Y A V V + P
Sbjct: 63 LVIANALTEDEGDYVFA--PDAYNVTLPAKVHVISGP 97
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 71.6 bits (175), Expect = 3e-15
Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 14/104 (13%)
Query: 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPL---PQMTWFHDGN---SLDSDDHVTYEHDG 98
+F+ RP + G + + V G L P + WF S H+
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63
Query: 99 --------FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 134
F L + + + G Y C + S + ++
Sbjct: 64 DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107
Score = 71.6 bits (175), Expect = 3e-15
Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 14/104 (13%)
Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPL---PQMTWFHDGN---SLDSDDHVTYEHDG 282
+F+ RP + G + + V G L P + WF S H+
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63
Query: 283 --------FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 318
F L + + + G Y C + S + ++
Sbjct: 64 DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107
Score = 69.6 bits (170), Expect = 1e-14
Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 15/104 (14%)
Query: 138 APRLVVKPFDMRAPAGSSVEIPCKPDGEPL---PRISWSKDEAEFVEDRNHKIHR----- 189
V++P D G S+ + G L P + W K + + + + +
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63
Query: 190 -------TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 226
L + + P +G YRC S D + LTV
Sbjct: 64 DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107
Score = 69.6 bits (170), Expect = 1e-14
Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 15/104 (14%)
Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDGEPL---PRISWSKDEAEFVEDRNHKIHR----- 373
V++P D G S+ + G L P + W K + + + + +
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63
Query: 374 -------TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
L + + P +G YRC S D + LTV
Sbjct: 64 DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107
Score = 35.4 bits (81), Expect = 0.014
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 3 DRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVN 43
+ EL I+ Q G Y C + ++TV+
Sbjct: 67 SKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 74.8 bits (183), Expect = 4e-15
Identities = 36/205 (17%), Positives = 59/205 (28%), Gaps = 44/205 (21%)
Query: 145 PFDMRAPAGSSVEIPCKPDG-EPLPRISWSKDE---------------------AEFVED 182
P + G SV + C P G + W +
Sbjct: 7 PPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRG 66
Query: 183 RNH--KIHRTGSLRLYNIGPQDSGLYRCTA-SNLLGEDVAEGYLTVTGAP---PIFIQRP 236
R+ ++ G L L D Y C + G A L V P + +
Sbjct: 67 RSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKG 126
Query: 237 VSTTYSTGSTSRITCLVE-GHPLPQMTWFHDGNSLDSDDHV----------TYEHDGF-- 283
+ + TC G+P P++TW+ +G L+ + E G
Sbjct: 127 TLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLS 186
Query: 284 ---VLVLNGVRESDAGVYNCVAQNS 305
L L ++ ++C A S
Sbjct: 187 LTSTLYLRLRKDDRDASFHCAAHYS 211
Score = 69.5 bits (169), Expect = 3e-13
Identities = 27/133 (20%), Positives = 45/133 (33%), Gaps = 21/133 (15%)
Query: 10 LVISGVQREHGGRYSC-VAGNPAGVYRGDLHVTVNAPP----IFIQRPVSTTYSTGSTSR 64
LV++ Q Y C V AG + V A P + + + +
Sbjct: 79 LVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEI 138
Query: 65 ITCLVE-GHPLPQMTWFHDGNSLDSDDHV----------TYEHDGF-----VLVLNGVRE 108
TC G+P P++TW+ +G L+ + E G L L ++
Sbjct: 139 ATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKD 198
Query: 109 SDAGVYNCVAQNS 121
++C A S
Sbjct: 199 DRDASFHCAAHYS 211
Score = 49.0 bits (116), Expect = 2e-06
Identities = 40/230 (17%), Positives = 64/230 (27%), Gaps = 50/230 (21%)
Query: 40 VTVNAPPIFIQRPVSTTYSTGSTSRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYEHDG 98
V ++ PP V G + + C G H + WF S + E G
Sbjct: 2 VRLSVPP-----LVEVMR--GKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQG 54
Query: 99 ----------------------FVLVLNGVRESDAGVYNC-VAQNSEGSAESVAMIRING 135
LVL + D Y C V + G+AE+ A + +
Sbjct: 55 SELQVTMHDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFA 114
Query: 136 --HRAPRLVVKPFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEF------------- 179
K + C +G P P+I+W ++
Sbjct: 115 KPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMT 174
Query: 180 ---VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 226
V + + + T +L L + C A L E + T
Sbjct: 175 SRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPT 224
Score = 47.9 bits (113), Expect = 4e-06
Identities = 37/221 (16%), Positives = 60/221 (27%), Gaps = 43/221 (19%)
Query: 233 IQRPVSTTYSTGSTSRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYEHDG--------- 282
+ P G + + C G H + WF S + E G
Sbjct: 4 LSVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHD 63
Query: 283 -------------FVLVLNGVRESDAGVYNC-VAQNSEGSAESVAMIRING--HRAPRLV 326
LVL + D Y C V + G+AE+ A + +
Sbjct: 64 TRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSP 123
Query: 327 VKPFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEF----------------VEDRNH 369
K + C +G P P+I+W ++ V + +
Sbjct: 124 NKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASG 183
Query: 370 KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
+ T +L L + C A L E + T
Sbjct: 184 LLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPT 224
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 77.1 bits (190), Expect = 8e-15
Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 6/98 (6%)
Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFV----EDRNHKIHRTGS 192
AP ++ P D+ G E+ C+ P+ + W + + G+
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGT 408
Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPP 230
L ++ D+G+Y C +N+ G A YL V+ A
Sbjct: 409 LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGT 446
Score = 72.9 bits (179), Expect = 2e-13
Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 6/101 (5%)
Query: 321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFV----EDRNHKIHRTGS 376
AP ++ P D+ G E+ C+ P+ + W + + G+
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGT 408
Query: 377 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEP 417
L ++ D+G+Y C +N+ G A YL V+ +
Sbjct: 409 LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGTHHH 449
Score = 66.7 bits (163), Expect = 1e-11
Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 9/107 (8%)
Query: 217 DVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH- 275
+V + + P + P S G + + C P+ + W ++ S
Sbjct: 342 EVDQASFQCS--APFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASR 397
Query: 276 ---VTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 319
++ +DG L + V SD GVY C+ N G++ + A + ++
Sbjct: 398 HPRISVLNDG-TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVST 443
Score = 66.7 bits (163), Expect = 1e-11
Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
Query: 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDH----VTYEHDGFV 100
P + P S G + + C P+ + W ++ S ++ +DG
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDG-T 408
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 135
L + V SD GVY C+ N G++ + A + ++
Sbjct: 409 LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVST 443
Score = 44.4 bits (105), Expect = 1e-04
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP 46
L S V G Y+C+ N AG ++ V+
Sbjct: 409 LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAG 445
>1d2v_A Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide;
HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP:
a.93.1.2 PDB: 1cxp_A* 1d5l_A* 1d7w_A* 1dnu_A* 1dnw_A*
4dl1_A* 3zs1_A* 3f9p_A* 1mhl_A* 1myp_A* 3zs0_A*
Length = 104
Score = 69.7 bits (170), Expect = 1e-14
Identities = 24/62 (38%), Positives = 27/62 (43%)
Query: 665 FHTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPILSSPMAGNIDPFVG 724
KYRTI G CNN + P GAS F R L YE+GFS P G
Sbjct: 3 EQDKYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLPYGWTPGVKRNGFPVALAR 62
Query: 725 AI 726
A+
Sbjct: 63 AV 64
Score = 52.7 bits (126), Expect = 1e-08
Identities = 18/38 (47%), Positives = 20/38 (52%)
Query: 865 EVRVCFSPRPTTSITPDPVITHMVMQWGQFLDHDLDHA 902
V PT +TPD + M MQWGQ LDHDLD
Sbjct: 63 AVSNEIVRFPTDQLTPDQERSLMFMQWGQLLDHDLDFT 100
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 69.7 bits (171), Expect = 1e-14
Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 5/87 (5%)
Query: 44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL--DSDDHVTYEHDGFV- 100
+ + ++ TT G + C V + WF +G + +G
Sbjct: 6 SGIMVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKH 64
Query: 101 -LVLNGVRESDAGVYNCVAQNSEGSAE 126
L++ G ++DA Y+ + + SA+
Sbjct: 65 ILIIEGATKADAAEYSVMTTGGQSSAK 91
Score = 69.7 bits (171), Expect = 1e-14
Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 5/87 (5%)
Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL--DSDDHVTYEHDGFV- 284
+ + ++ TT G + C V + WF +G + +G
Sbjct: 6 SGIMVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKH 64
Query: 285 -LVLNGVRESDAGVYNCVAQNSEGSAE 310
L++ G ++DA Y+ + + SA+
Sbjct: 65 ILIIEGATKADAAEYSVMTTGGQSSAK 91
Score = 55.8 bits (135), Expect = 1e-09
Identities = 18/114 (15%), Positives = 33/114 (28%), Gaps = 20/114 (17%)
Query: 123 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED 182
GS+ S + + D A G VE+ C+ + W K+ E +
Sbjct: 1 GSSGS---------SGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPG 50
Query: 183 RNHKIH-----RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG-APP 230
+ + L + D+ Y + L+V + P
Sbjct: 51 PKSRYRIRVEGKKHILIIEGATKADAAEYSVMT----TGGQSSAKLSVDLKSGP 100
Score = 54.3 bits (131), Expect = 3e-09
Identities = 18/121 (14%), Positives = 34/121 (28%), Gaps = 24/121 (19%)
Query: 307 GSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED 366
GS+ S + + D A G VE+ C+ + W K+ E +
Sbjct: 1 GSSGS---------SGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPG 50
Query: 367 RNHKIH-----RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHT 421
+ + L + D+ Y + L+V + +
Sbjct: 51 PKSRYRIRVEGKKHILIIEGATKADAAEYSVMT----TGGQSSAKLSVD-----LKSGPS 101
Query: 422 S 422
S
Sbjct: 102 S 102
Score = 37.7 bits (88), Expect = 0.002
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP 46
L+I G + YS + L V + + P
Sbjct: 66 LIIEGATKADAAEYSVMTTGGQS--SAKLSVDLKSGP 100
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 72.8 bits (178), Expect = 2e-14
Identities = 36/204 (17%), Positives = 63/204 (30%), Gaps = 42/204 (20%)
Query: 149 RAPAGSSVEIPC----KPDGEPLPRISWSKDE-------------------------AEF 179
A G ++PC E + + W
Sbjct: 15 LAMVGEDADLPCHLFPTMSAETM-ELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSI 73
Query: 180 VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVST 239
+ D +LR++N+ DSG Y C + G+ + + + A V
Sbjct: 74 LRDGIT--AGKAALRIHNVTASDSGKYLCYFQD--GDFYEKALVELKVAAL-GSDLHVDV 128
Query: 240 TYSTGSTSRITCLVEG-HPLPQMTWF-HDGNSL-DSDDHVTYEHDGFVLV---LNGVRES 293
+ C G +P PQ+ W + G ++ + V + G V + +R S
Sbjct: 129 KGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVI-MRGS 187
Query: 294 DAGVYNCVAQNSEGSAESVAMIRI 317
+C ++S E A I I
Sbjct: 188 SGEGVSCTIRSSLLGLEKTASISI 211
Score = 65.9 bits (160), Expect = 4e-12
Identities = 28/173 (16%), Positives = 60/173 (34%), Gaps = 18/173 (10%)
Query: 76 QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 135
Q + S+ D + L ++ V SD+G Y C Q+ + +++ +++
Sbjct: 63 QSAPYRGRTSILRDGITAGK---AALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAA 119
Query: 136 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLPRISWSKDEAEFVEDRNHKIHRTGSLR 194
+ V D++ + + C+ G P P+I WS ++ E + + G
Sbjct: 120 LGSDLHV----DVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGV-G 174
Query: 195 LYNI------GPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTY 241
LY + CT + L +++ F + +
Sbjct: 175 LYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISI---ADPFFRSAQHHHH 224
Score = 65.5 bits (159), Expect = 5e-12
Identities = 27/158 (17%), Positives = 57/158 (36%), Gaps = 15/158 (9%)
Query: 260 QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRING 319
Q + S+ D + L ++ V SD+G Y C Q+ + +++ +++
Sbjct: 63 QSAPYRGRTSILRDGITAGK---AALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAA 119
Query: 320 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGE-PLPRISWSKDEAEFVEDRNHKIHRTGSLR 378
+ V D++ + + C+ G P P+I WS ++ E + + G
Sbjct: 120 LGSDLHV----DVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGV-G 174
Query: 379 LYNI------GPQDSGLYRCTASNLLGEDVAEGYLTVT 410
LY + CT + L +++
Sbjct: 175 LYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIA 212
Score = 63.6 bits (154), Expect = 3e-11
Identities = 27/130 (20%), Positives = 45/130 (34%), Gaps = 9/130 (6%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLV 69
L I V G+Y C + G + V + + V + C
Sbjct: 85 LRIHNVTASDSGKYLCYFQD--GDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRS 142
Query: 70 EG-HPLPQMTWF-HDGNSL-DSDDHVTYEHDGFVLV---LNGVRESDAGVYNCVAQNSEG 123
G +P PQ+ W + G ++ + V + G V + +R S +C ++S
Sbjct: 143 TGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVI-MRGSSGEGVSCTIRSSLL 201
Query: 124 SAESVAMIRI 133
E A I I
Sbjct: 202 GLEKTASISI 211
Score = 37.8 bits (87), Expect = 0.010
Identities = 16/125 (12%), Positives = 31/125 (24%), Gaps = 34/125 (27%)
Query: 333 RAPAGSSVEIPC----KPDGEPLPRISWSKDE-------------------------AEF 363
A G ++PC E + + W
Sbjct: 15 LAMVGEDADLPCHLFPTMSAETM-ELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSI 73
Query: 364 VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSR 423
+ D +LR++N+ DSG Y C + G+ + + + +
Sbjct: 74 LRDGIT--AGKAALRIHNVTASDSGKYLCYFQD--GDFYEKALVELKVAALGSDLHVDVK 129
Query: 424 EPSAS 428
Sbjct: 130 GYKDG 134
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 75.5 bits (186), Expect = 3e-14
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
Query: 136 HRAPRLV-VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH---KIHRTG 191
R R+ K + G +V+ C+ DG+P P I W V +++ + G
Sbjct: 382 CRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDG 441
Query: 192 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 226
+L + QD+G Y C A+N G D +L V
Sbjct: 442 TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVR 476
Score = 75.5 bits (186), Expect = 3e-14
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
Query: 320 HRAPRLV-VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNH---KIHRTG 375
R R+ K + G +V+ C+ DG+P P I W V +++ + G
Sbjct: 382 CRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDG 441
Query: 376 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
+L + QD+G Y C A+N G D +L V
Sbjct: 442 TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVR 476
Score = 69.0 bits (169), Expect = 3e-12
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 4/94 (4%)
Query: 44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL---DSDDHVTYEHDGFV 100
I ++ G T + C +G P P + W L S+ +T DG
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDG-T 442
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 134
L + + D G Y C+A N+ G+ A + +
Sbjct: 443 LEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVR 476
Score = 69.0 bits (169), Expect = 3e-12
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 4/94 (4%)
Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL---DSDDHVTYEHDGFV 284
I ++ G T + C +G P P + W L S+ +T DG
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDG-T 442
Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRIN 318
L + + D G Y C+A N+ G+ A + +
Sbjct: 443 LEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVR 476
Score = 44.3 bits (105), Expect = 1e-04
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNA 44
L + Q + G Y C+A N G H+ V +
Sbjct: 443 LEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVRS 477
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 72.2 bits (177), Expect = 1e-13
Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 2/104 (1%)
Query: 144 KPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHK--IHRTGSLRLYNIGPQ 201
K A G ++ I C + + ++ S + + ++ R G L + +
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVE 311
Query: 202 DSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGS 245
D G+Y C A + L V ++ S
Sbjct: 312 DGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLNAAADPWS 355
Score = 69.5 bits (170), Expect = 1e-12
Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 4/106 (3%)
Query: 328 KPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHK--IHRTGSLRLYNIGPQ 385
K A G ++ I C + + ++ S + + ++ R G L + +
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVE 311
Query: 386 DSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPS 431
D G+Y C A + L V N H + +A S
Sbjct: 312 DGGVYTCYAMGETFNETLSVELKVY--NFTLHGHHDTLNAAADPWS 355
Score = 68.7 bits (168), Expect = 2e-12
Identities = 16/120 (13%), Positives = 31/120 (25%), Gaps = 16/120 (13%)
Query: 51 RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL--DSDDHVTYEHDGFVLVLNGVRE 108
+ + G T I C + + ++ + + +G L V+
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNG-DLFFKKVQV 310
Query: 109 SDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP 168
D GVY C A + +++ G + D P
Sbjct: 311 EDGGVYTCYAMGETFNETLSVELKVYNF-------------TLHGHHDTLNAAADPWSHP 357
Score = 68.7 bits (168), Expect = 2e-12
Identities = 16/120 (13%), Positives = 31/120 (25%), Gaps = 16/120 (13%)
Query: 235 RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSL--DSDDHVTYEHDGFVLVLNGVRE 292
+ + G T I C + + ++ + + +G L V+
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNG-DLFFKKVQV 310
Query: 293 SDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP 352
D GVY C A + +++ G + D P
Sbjct: 311 EDGGVYTCYAMGETFNETLSVELKVYNF-------------TLHGHHDTLNAAADPWSHP 357
Score = 49.1 bits (117), Expect = 4e-06
Identities = 10/57 (17%), Positives = 18/57 (31%)
Query: 7 STELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTS 63
+ +L VQ E GG Y+C A + + V + + +
Sbjct: 300 NGDLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLNAAADPWSH 356
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 66.0 bits (161), Expect = 3e-12
Identities = 27/185 (14%), Positives = 56/185 (30%), Gaps = 16/185 (8%)
Query: 58 STGSTSRITCLVEGHPLPQMTWFH---DGNSLDSDDHVTYEH-DGFVLVLNGVRESDAGV 113
+ +I C + +T + + + + + V++ + + AG
Sbjct: 21 PLDGSVKIQC--QAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGR 78
Query: 114 YNCVAQNSEGSAESVAMIRI---NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRI 170
Y C + + + + P L + G ++ + C P R
Sbjct: 79 YQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADR-GLVLMPGENISLTCSSAHIPFDRF 137
Query: 171 SWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY-----LTV 225
S +K E E ++ + L + SG+YRC + L V
Sbjct: 138 SLAK-EGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVV 196
Query: 226 TGAPP 230
T +
Sbjct: 197 TDSIH 201
Score = 65.3 bits (159), Expect = 5e-12
Identities = 28/192 (14%), Positives = 57/192 (29%), Gaps = 19/192 (9%)
Query: 242 STGSTSRITCLVEGHPLPQMTWFH---DGNSLDSDDHVTYEH-DGFVLVLNGVRESDAGV 297
+ +I C + +T + + + + + V++ + + AG
Sbjct: 21 PLDGSVKIQC--QAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGR 78
Query: 298 YNCVAQNSEGSAESVAMIRI---NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRI 354
Y C + + + + P L + G ++ + C P R
Sbjct: 79 YQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADR-GLVLMPGENISLTCSSAHIPFDRF 137
Query: 355 SWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY-----LTV 409
S +K E E ++ + L + SG+YRC + L V
Sbjct: 138 SLAK-EGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVV 196
Query: 410 TGENSVEPAPHT 421
T +T
Sbjct: 197 TDS---IHQDYT 205
Score = 56.0 bits (135), Expect = 8e-09
Identities = 21/124 (16%), Positives = 33/124 (26%), Gaps = 6/124 (4%)
Query: 5 RSSTELVISGVQREHGGRYSCVAGNPAGV----YRGDLHVTVNAPPIFIQRPVSTTYSTG 60
+ E VI + GRY C +L VT F+ G
Sbjct: 61 ETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPG 120
Query: 61 STSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN 120
+TC P + + +G L V + +G+Y C
Sbjct: 121 ENISLTCSSAHIPFDRFSLAKEGELSLP--QHQSGEHPANFSLGPVDLNVSGIYRCYGWY 178
Query: 121 SEGS 124
+
Sbjct: 179 NRSP 182
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 68.9 bits (168), Expect = 7e-12
Identities = 112/664 (16%), Positives = 193/664 (29%), Gaps = 220/664 (33%)
Query: 51 RPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESD 110
RP++ ++ GS LV P ++F + L + F +L E
Sbjct: 7 RPLTLSH--GSL-EHVLLV-----PTASFFI-ASQL---------QEQFNKILPEPTEGF 48
Query: 111 AG-----------------VYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAG 153
A V + V + G + V L + F+ G
Sbjct: 49 AADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVL----------NLCLTEFENCYLEG 98
Query: 154 SSV-----EIPCKPDGEPLPRISWSKD--EAEFVEDRN-HKIH--------RTGSLRLYN 197
+ + ++ + D + K+ A + R K G+ +L
Sbjct: 99 NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA 158
Query: 198 I-GPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGH 256
I G Q G + E + + Y T I+ T T+ V
Sbjct: 159 IFGGQ--G----NTDDYFEE-LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211
Query: 257 PLPQMTWFHDGNSLDSDDHVTYEHDGFVLV---LNGVRESDAGVYNCVAQNSEGSAESVA 313
L + W + ++ D++ + + L GV Y V G
Sbjct: 212 GLNILEWLENPSNTPDKDYLLS-----IPISCPLIGV--IQLAHY-VVTAKLLG------ 257
Query: 314 MIRINGHRAPRLVVKPFDMRAP-AGSSVEIPCKPDGEPLPR---ISWSKDEAEFVEDRNH 369
P ++R+ G++ + L I+ + F
Sbjct: 258 -------------FTPGELRSYLKGATGH------SQGLVTAVAIAETDSWESFFVSVRK 298
Query: 370 KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASK 429
I L+ IG RC E P+TS PS +
Sbjct: 299 AITV-----LFFIG------VRCY----------------------EAYPNTSLPPSILE 325
Query: 430 PSVADD----TIHM-AVKLASRE-VDAAVNATINSLFGYHSNEQQDHGSLMKLLRFPDES 483
S+ ++ + M ++ ++E V VN T NS + +Q SL+
Sbjct: 326 DSLENNEGVPS-PMLSISNLTQEQVQDYVNKT-NS---HLPAGKQVEISLVN-------G 373
Query: 484 ARTVVRAADVYERTLSHIKKHIQAGVKMNLSEDLSLGKAFFSPWRLVDEGGVDPLLRGFI 543
A+ +V + ++L + ++ K D S + FS +L P +
Sbjct: 374 AKNLVVSG--PPQSLYGLNLTLR-KAKAPSGLDQS--RIPFSERKLKFSNRFLP-----V 423
Query: 544 TSPAKRKRPTENLNKELTDKLFTTFH------AVSL---DLAAMNIQ-RGRDHGIPEYNA 593
SP FH A L DL N+ +D IP Y+
Sbjct: 424 ASP---------------------FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDT 462
Query: 594 -----WREYCGLPRANTFEDLAREITDRRVR-DKLQRL-------YGHPG-FSYHDVLSP 639
R G + E + I V+ + + +G PG S VL+
Sbjct: 463 FDGSDLRVLSG----SISERIVDCIIRLPVKWETTTQFKATHILDFG-PGGASGLGVLTH 517
Query: 640 RQIE 643
R +
Sbjct: 518 RNKD 521
Score = 57.0 bits (137), Expect = 3e-08
Identities = 103/604 (17%), Positives = 181/604 (29%), Gaps = 217/604 (35%)
Query: 407 LTVTGENSVE---PAPHTS-------RE------PSASKPSVADDTIHMAVKLASREVDA 450
LT++ S+E P S +E P ++ ADD +L +
Sbjct: 9 LTLS-HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK---- 63
Query: 451 AVNATINSLF-GY--HSNEQQDHGSLMKLLRFP-DESARTVVRAADVYERTLSHIKKHIQ 506
F GY E G ++L E + D+ H
Sbjct: 64 ---------FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI----------HAL 104
Query: 507 AGVKMNLSEDLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFT 566
A K+ D +L K L++ +IT+ KRP +K+ LF
Sbjct: 105 A-AKLLQENDTTLVKTKE-------------LIKNYITARIMAKRP---FDKKSNSALFR 147
Query: 567 TFHAVSLDLAAMNI---QRGRDHGIPE-YNAWRE-------YCGLPR------ANTFEDL 609
+ L A I Q G + Y + E Y L A T +L
Sbjct: 148 AVGEGNAQLVA--IFGGQ-----GNTDDY--FEELRDLYQTYHVLVGDLIKFSAETLSEL 198
Query: 610 AREITDRRVRDKLQRLYGHPGFSYHDVLS-----PRQIELIA-----NLSGCMEHQRTAN 659
R D ++++ G + + L P + L++ L G + Q
Sbjct: 199 IRTTLDA------EKVFTQ-GLNILEWLENPSNTPDKDYLLSIPISCPLIGVI--Q---- 245
Query: 660 CSDLCFHTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPILSSP---MA 716
L H Y T L G + R LK G + ++++
Sbjct: 246 ---LA-H--YVV---TAKLL-----GFTPGELRSYLK-----GATGHSQGLVTAVAIAET 286
Query: 717 GNIDPFVGAILEDQVDGGRVGPTMRCLLI------DQFKRIRDGNIDPFVGAILEDQVDG 770
+ + F ++ + + L + + ++ P +ILED ++
Sbjct: 287 DSWESFFVSVRK----------AITVLFFIGVRCYEAYPNT---SLPP---SILEDSLEN 330
Query: 771 GRVGPT-M---RCLLIDQ-FKRIRDGNID-PFVGAI---LEDQVDGGR--V--GPT---- 813
P+ M L +Q + N P + L V+G + V GP
Sbjct: 331 NEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL---VNGAKNLVVSGPPQSLY 387
Query: 814 -MRCLL--------IDQFK------RIRDGDRFWYENPST--F-----KPAQLTQIKQAS 851
+ L +DQ + +++ +RF P F PA I +
Sbjct: 388 GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF---LPVASPFHSHLLVPAS-DLINKDL 443
Query: 852 LARVICDSGDRL------TE----VRVCFSPRPTTSITPD--PVITHMVMQWGQFLDHDL 899
+ + + + T +RV + SI+ I + ++W
Sbjct: 444 VKNNVSFNAKDIQIPVYDTFDGSDLRVL-----SGSISERIVDCIIRLPVKWETTTQFKA 498
Query: 900 DHAI 903
H +
Sbjct: 499 THIL 502
Score = 36.6 bits (84), Expect = 0.047
Identities = 48/284 (16%), Positives = 82/284 (28%), Gaps = 124/284 (43%)
Query: 70 EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ-NSEGSAESV 128
EG P P M L ++ + + V + V + NS A
Sbjct: 332 EGVPSP-M-----------------------LSISNL--TQEQVQDYVNKTNSHLPAGKQ 365
Query: 129 AMI-RINGHRAPRLVV---------------------------KPFDMRAPAGSSVEIPC 160
I +NG + LVV PF R S+
Sbjct: 366 VEISLVNGAKN--LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSN----- 418
Query: 161 KPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE 220
LP ++ + F H S L AS+L+ +D+ +
Sbjct: 419 ----RFLP-VA-----SPF-----H-----------------SHLLV-PASDLINKDLVK 445
Query: 221 GYLTVTGAPPIFIQRPVSTTYSTGSTSRI--TCLVEGHPLPQMT-----WFHDGNSLDSD 273
++ IQ PV T+ GS R+ + E + + W ++
Sbjct: 446 NNVSFNAKD---IQIPVYDTF-DGSDLRVLSGSISERI-VDCIIRLPVKW-------ETT 493
Query: 274 DHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
H +L G +G+ +N +G+ +R+
Sbjct: 494 TQFKATH---ILDF-G-PGGASGLGVLTHRNKDGTG-----VRV 527
Score = 36.2 bits (83), Expect = 0.074
Identities = 40/242 (16%), Positives = 69/242 (28%), Gaps = 93/242 (38%)
Query: 599 GLPRANTFEDLAREITDRRVRDK-LQRLYGHPGFSYHDVLSPRQIELIANLSGCMEHQRT 657
G+ T A+++ +R D + YG FS D++ + L + G +
Sbjct: 1632 GMDLYKTS-KAAQDVWNRA--DNHFKDTYG---FSILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 658 ANCSDLCFHTKYRTIDGTCNNLQHPMWGASLTGFRRLLKPIYENGFSTPVAPILSSPMAG 717
N S + F T DG ++ K I E+ S S G
Sbjct: 1686 ENYSAMIFETIV---DGKLK-------------TEKIFKEINEHSTSY----TFRSE-KG 1724
Query: 718 NID------PFVGAILEDQVDGGRVGPTMRCLLIDQFKRIRD-GNIDP---FVG------ 761
+ P A+ M F+ ++ G I F G
Sbjct: 1725 LLSATQFTQP---ALT-----------LMEKAA---FEDLKSKGLIPADATFAGHSLGEY 1767
Query: 762 -AI--------LEDQVDGGRVGPTMRCLLIDQFKRIRDGNIDPFVGAILEDQVDGGRVGP 812
A+ +E V+ ++ F R G ++ V +G
Sbjct: 1768 AALASLADVMSIESLVE----------VV---FYR----------GMTMQVAVPRDELGR 1804
Query: 813 TM 814
+
Sbjct: 1805 SN 1806
Score = 33.9 bits (77), Expect = 0.32
Identities = 39/229 (17%), Positives = 60/229 (26%), Gaps = 87/229 (37%)
Query: 35 RGDLHVTVNA-PPIFIQRPVSTTY-------STGSTSRITCLVEGHPLPQMTWFHDG--- 83
+G L T P + + + S G GH L G
Sbjct: 1723 KGLLSATQFTQPALTL---ME--KAAFEDLKSKGLIPA-DATFAGHSL--------GEYA 1768
Query: 84 ------NSLDSDDHVTYEHDGFVLVLNGVRESDAG--VYNCVAQNSEGSAESVAMIRING 135
+ + + V +V R G + V ++ G + + MI IN
Sbjct: 1769 ALASLADVMSIESLVE-------VVF--YR----GMTMQVAVPRDELGRS-NYGMIAIN- 1813
Query: 136 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRL 195
P V F A ++ + R+ K VE N
Sbjct: 1814 ---PGRVAASFSQEA-----LQYVVE-------RV--GKRTGWLVEIVN----------- 1845
Query: 196 YNIGPQD---SGLYRCTASNLLGEDVAEGYLTVTGAPPI-FIQRPVSTT 240
YN+ Q +G L D L I I+ S +
Sbjct: 1846 YNVENQQYVAAG----DLRAL---DTVTNVLNFIKLQKIDIIELQKSLS 1887
Score = 33.1 bits (75), Expect = 0.59
Identities = 32/179 (17%), Positives = 52/179 (29%), Gaps = 52/179 (29%)
Query: 467 Q--QDHGSLMKLLR-FPDESARTVVRAADVYER-----TLSHIKKH------IQAG---- 508
Q Q+ G M L + +A+ V AD + + ++ I + I G
Sbjct: 1624 QGSQEQGMGMDLYKTSK--AAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKG 1681
Query: 509 --VKMNLS----EDLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTD 562
++ N S E + GK + E ++ + L+ T
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEK--IFKE--INEHSTSYTFRS-----EKGLLS--ATQ 1730
Query: 563 K----LFTTFHAVSLDLAAMNIQRGRD----H--GIPEYNAWREYCGLPRANTFEDLAR 611
L A DL + + H G EY A L + E L
Sbjct: 1731 FTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLG--EYAA---LASLADVMSIESLVE 1784
Score = 30.0 bits (67), Expect = 5.3
Identities = 41/251 (16%), Positives = 65/251 (25%), Gaps = 112/251 (44%)
Query: 10 LVISGVQREH------------------------GGRYSCVAGNPAGVYRGDLHV-TVNA 44
L IS + +E G + V+G P +Y +L + A
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA 398
Query: 45 PP------I-FIQRPVSTTYSTGSTS--RITCLVEGHPLPQMTWFHDGNSLDSDDHVTYE 95
P I F +R + S + P FH S
Sbjct: 399 PSGLDQSRIPFSERKL-----KFSNRFLPVAS-----P------FH------SH----LL 432
Query: 96 HDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGH--RAPRLVVKPF---DMRA 150
L+ + +++ + N + P V F D+R
Sbjct: 433 VPASDLINKDLVKNN--------------------VSFNAKDIQIP--VYDTFDGSDLRV 470
Query: 151 PAGSSVE-----IPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGP-QDSG 204
+GS E I P + W + + + + GP SG
Sbjct: 471 LSGSISERIVDCIIRLP-------VKWE------------TTTQFKATHILDFGPGGASG 511
Query: 205 LYRCTASNLLG 215
L T N G
Sbjct: 512 LGVLTHRNKDG 522
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 62.1 bits (150), Expect = 1e-11
Identities = 15/104 (14%), Positives = 31/104 (29%), Gaps = 12/104 (11%)
Query: 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLP--QMTWFHDGNSLDSDDHVTYEHDGF--- 99
+ + S G + C W + + V +
Sbjct: 8 YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS 67
Query: 100 -------VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGH 136
L ++GV SD G+Y C A + + ++ +R++
Sbjct: 68 EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEK 111
Score = 62.1 bits (150), Expect = 1e-11
Identities = 15/104 (14%), Positives = 31/104 (29%), Gaps = 12/104 (11%)
Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLP--QMTWFHDGNSLDSDDHVTYEHDGF--- 283
+ + S G + C W + + V +
Sbjct: 8 YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS 67
Query: 284 -------VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGH 320
L ++GV SD G+Y C A + + ++ +R++
Sbjct: 68 EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEK 111
Score = 60.5 bits (146), Expect = 3e-11
Identities = 15/108 (13%), Positives = 32/108 (29%), Gaps = 13/108 (12%)
Query: 145 PFDMRAPAGSSVEIPCKPDGEPLPRISWSKD-------------EAEFVEDRNHKIHRTG 191
+ G + + C E I ++ + + +
Sbjct: 15 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS 74
Query: 192 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVST 239
+L + + D GLY C AS+ L ++ V P + + +
Sbjct: 75 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMES 122
Score = 56.3 bits (135), Expect = 1e-09
Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 13/94 (13%)
Query: 329 PFDMRAPAGSSVEIPCKPDGEPLPRISWSKD-------------EAEFVEDRNHKIHRTG 375
+ G + + C E I ++ + + +
Sbjct: 15 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS 74
Query: 376 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
+L + + D GLY C AS+ L ++ V
Sbjct: 75 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV 108
Score = 47.0 bits (111), Expect = 2e-06
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQ 50
++ ++ + L I GV R G Y+C A + + V V+ P F+
Sbjct: 67 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP-FVA 115
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 66.4 bits (161), Expect = 1e-11
Identities = 33/187 (17%), Positives = 56/187 (29%), Gaps = 19/187 (10%)
Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRL 195
R P V + + G SV + C + E + W + + L L
Sbjct: 5 RCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLL 64
Query: 196 YNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVE- 254
++ DSG Y C + G +L V PP + P + + S + C
Sbjct: 65 RSVQLHDSGNYSCYRA---GRPAGTVHLLV-DVPP---EEPQLSCFRKSPLSNVVCEWGP 117
Query: 255 ----GHPLPQMTWFHDGNSLDSDDHVT----YEHDGFVLVLNGVRESDAGVY--NCVAQN 304
+ + ++D + V E D+ Y + +
Sbjct: 118 RSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVAS 177
Query: 305 SEGSAES 311
S GS S
Sbjct: 178 SVGSKFS 184
Score = 57.6 bits (138), Expect = 7e-09
Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 4/90 (4%)
Query: 321 RAPRLVVKPFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRL 379
R P V + + G SV + C + E + W + + L L
Sbjct: 5 RCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLL 64
Query: 380 YNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
++ DSG Y C + G +L V
Sbjct: 65 RSVQLHDSGNYSCYRA---GRPAGTVHLLV 91
Score = 51.8 bits (123), Expect = 5e-07
Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 2/83 (2%)
Query: 40 VTVNAPPIFIQRPVSTTYSTGSTSRITC-LVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG 98
+ P T G + +TC VE + W + + G
Sbjct: 1 LAPRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAA-GSHPSRWAGMG 59
Query: 99 FVLVLNGVRESDAGVYNCVAQNS 121
L+L V+ D+G Y+C
Sbjct: 60 RRLLLRSVQLHDSGNYSCYRAGR 82
Score = 49.5 bits (117), Expect = 2e-06
Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 2/80 (2%)
Query: 227 GAPPIFIQRPVSTTYSTGSTSRITC-LVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVL 285
P T G + +TC VE + W + + G L
Sbjct: 4 RRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAA-GSHPSRWAGMGRRL 62
Query: 286 VLNGVRESDAGVYNCVAQNS 305
+L V+ D+G Y+C
Sbjct: 63 LLRSVQLHDSGNYSCYRAGR 82
Score = 40.6 bits (94), Expect = 0.001
Identities = 25/133 (18%), Positives = 42/133 (31%), Gaps = 17/133 (12%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRI 65
L++ VQ G YSC G G +H+ V+ PP + P + + S +
Sbjct: 58 MGRRLLLRSVQLHDSGNYSCYRA---GRPAGTVHLLVDVPP---EEPQLSCFRKSPLSNV 111
Query: 66 TCLVE-----GHPLPQMTWFHDGNSLDSDDHVT----YEHDGFVLVLNGVRESDAGVY-- 114
C + + ++D + V E D+ Y
Sbjct: 112 VCEWGPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIV 171
Query: 115 NCVAQNSEGSAES 127
+ +S GS S
Sbjct: 172 SMCVASSVGSKFS 184
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 63.6 bits (154), Expect = 2e-11
Identities = 25/173 (14%), Positives = 45/173 (26%), Gaps = 11/173 (6%)
Query: 143 VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQD 202
++P G S+ + C + R E + + R + +L +I +
Sbjct: 7 LQPRVAFVERGGSLWLNCSTNCPRPERGGL---ETSLRRNGTQRGLRWLARQLVDI-REP 62
Query: 203 SGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEG-HPLPQM 261
C A G + P P+ G ++C V G P +
Sbjct: 63 ETQPVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASL 122
Query: 262 T--WFHDGNSLDSDDHVTYEHDGF----VLVLNGVRESDAGVYNCVAQNSEGS 308
T L + RE ++C A+
Sbjct: 123 TLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLRP 175
Score = 53.2 bits (127), Expect = 6e-08
Identities = 16/127 (12%), Positives = 31/127 (24%), Gaps = 9/127 (7%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQ-RPVSTTYSTGSTSR 64
+ + RE + C + + P ++ P+ G
Sbjct: 50 RWLARQLVDI-REPETQPVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFT 108
Query: 65 ITCLVEG-HPLPQMT--WFHDGNSLDSDDHVTYEHDGF----VLVLNGVRESDAGVYNCV 117
++C V G P +T L + RE ++C
Sbjct: 109 LSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCR 168
Query: 118 AQNSEGS 124
A+
Sbjct: 169 AELDLRP 175
Score = 33.9 bits (77), Expect = 0.14
Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 4/83 (4%)
Query: 327 VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQD 386
++P G S+ + C + R E + + R + +L +I +
Sbjct: 7 LQPRVAFVERGGSLWLNCSTNCPRPERGGL---ETSLRRNGTQRGLRWLARQLVDI-REP 62
Query: 387 SGLYRCTASNLLGEDVAEGYLTV 409
C A G +
Sbjct: 63 ETQPVCFFRCARRTLQARGLIRT 85
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 67.0 bits (163), Expect = 2e-11
Identities = 24/197 (12%), Positives = 55/197 (27%), Gaps = 18/197 (9%)
Query: 236 PVSTTYSTGSTSRITCLVE-------GHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLN 288
P S S C+++ + W + ++ + + +
Sbjct: 10 PESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFT 69
Query: 289 GVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC--KP 346
+ + C ++V I I P KP ++ ++ C
Sbjct: 70 DIASLNIQ-LTCNILTFGQLEQNVYGITIISGLPPE---KPKNLSCIVNEGKKMRCEWDG 125
Query: 347 DGEPLP----RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDV 402
E + +F + + + T Y+ + A N LG+
Sbjct: 126 GRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVT 185
Query: 403 AEGYLTVTGENSVEPAP 419
++ ++ V+P P
Sbjct: 186 SD-HINFDPVYKVKPNP 201
Score = 66.2 bits (161), Expect = 3e-11
Identities = 30/231 (12%), Positives = 67/231 (29%), Gaps = 28/231 (12%)
Query: 142 VVKPFDMRAPAGSSVEIPC-------KPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLR 194
+ P S+ C I W + +++ I+RT S
Sbjct: 7 YISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSV 66
Query: 195 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT-GAPPIFIQRPVSTTYSTGSTSRITC-- 251
+ + C + +T+ G PP ++P + + ++ C
Sbjct: 67 TFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPP---EKPKNLSCIVNEGKKMRCEW 123
Query: 252 --LVEGHPLPQMTWFHDGNSLDSDDHVTYE--HDGFVLVLNGVRESDAGVYNCVAQNSEG 307
E H T + + D + + V + A+N+ G
Sbjct: 124 DGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVN-IEVWVEAENALG 182
Query: 308 SAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSK 358
S + ++ VKP P ++ + + + +++W+
Sbjct: 183 KVTSDHINFDPVYK-----VKP---NPP--HNLSVINSEELSSILKLTWTN 223
Score = 64.6 bits (157), Expect = 8e-11
Identities = 45/427 (10%), Positives = 101/427 (23%), Gaps = 66/427 (15%)
Query: 52 PVSTTYSTGSTSRITCLVE-------GHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLN 104
P S S C+++ + W + ++ + + +
Sbjct: 10 PESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFT 69
Query: 105 GVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC--KP 162
+ + C ++V I I P KP ++ ++ C
Sbjct: 70 DIASLNIQ-LTCNILTFGQLEQNVYGITIISGLPPE---KPKNLSCIVNEGKKMRCEWDG 125
Query: 163 DGEPLP----RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE-- 216
E + +F + + + T Y+ + A N LG+
Sbjct: 126 GRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVT 185
Query: 217 -DVAEGYLTVTGAP-PIFIQRPVSTTYSTGS-----------TSRIT-CLVEGHPLPQMT 262
D P P +++ + + I ++ T
Sbjct: 186 SDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDAST 245
Query: 263 WFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNC--VAQNSEG----SAESVAMIR 316
W + ++ Y +G S S
Sbjct: 246 WSQIPPEDTASTRSSFTVQDL---------KPFTEYVFRIRCMKEDGKGYWSDWSEEASG 296
Query: 317 INGHRAP----RLVVKPFDMRAPAGSSVEIPCKPDGEPLP-------RISWSKDEAEFVE 365
I P K +V++ K ++ ++ ++ ++
Sbjct: 297 ITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSH-LQ 355
Query: 366 DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREP 425
+ + D L T NL+G+ LT+ + P +
Sbjct: 356 NYTVNATKLTVNL-----TNDRYLATLTVRNLVGK-SDAAVLTIPACDFQATHPVMDLKA 409
Query: 426 SASKPSV 432
+
Sbjct: 410 FPKDNML 416
Score = 46.9 bits (111), Expect = 3e-05
Identities = 11/92 (11%), Positives = 23/92 (25%), Gaps = 7/92 (7%)
Query: 326 VVKPFDMRAPAGSSVEIPC-------KPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLR 378
+ P S+ C I W + +++ I+RT S
Sbjct: 7 YISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSV 66
Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
+ + C + +T+
Sbjct: 67 TFTDIASLNIQLTCNILTFGQLEQNVYGITII 98
Score = 38.4 bits (89), Expect = 0.010
Identities = 20/178 (11%), Positives = 57/178 (32%), Gaps = 23/178 (12%)
Query: 5 RSSTELVISGVQREHGGRYSCVAGNPAGVYRGD--LHVTVNAPPIFIQRPVSTTYSTGST 62
R+++ + + + + +C + + + + PP ++P + +
Sbjct: 61 RTASSVTFTDIASLNIQ-LTCNILTFGQLEQNVYGITIISGLPP---EKPKNLSCIVNEG 116
Query: 63 SRITC----LVEGHPLPQMTWFHDGNSLDSDDHVTYE--HDGFVLVLNGVRESDAGVYNC 116
++ C E H T + + D + + V +
Sbjct: 117 KKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVN-IEVWV 175
Query: 117 VAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSK 174
A+N+ G S + ++ VKP P ++ + + + +++W+
Sbjct: 176 EAENALGKVTSDHINFDPVYK-----VKP---NPP--HNLSVINSEELSSILKLTWTN 223
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 64.2 bits (156), Expect = 2e-11
Identities = 39/238 (16%), Positives = 70/238 (29%), Gaps = 23/238 (9%)
Query: 58 STGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF---VLVLNGVRESDAGVY 114
+ T + C + +G D+ + HDG + + + AG Y
Sbjct: 19 KSEETVILQCWSD-VRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTY 77
Query: 115 NCVAQNSEGSAES------VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP 168
C + + + ++ + P L +P AG SV + C
Sbjct: 78 RCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPT-VLAGESVTLSCSSR-SSYD 135
Query: 169 RISWSKDEAEFVEDRNHKIHRTGSLR-LYNIGP-QDSGLYRCTASNLLGEDVAEGY---- 222
S++ + G+ + + +GP G YRC S
Sbjct: 136 MYHLSREGEAHERRFSAGPKVNGTFQADFPLGPATHGGTYRCFGSFRDSPYEWSNSSDPL 195
Query: 223 -LTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEG----HPLPQMTWFHDGNSLDSDDH 275
++VTG P P + TG+ + E + G+S H
Sbjct: 196 LVSVTGNPSNSWPSPTEPSSETGNPRHLHAAAEQKLISEEDLNLDLVPRGSSSHHHHH 253
Score = 51.1 bits (122), Expect = 6e-07
Identities = 34/203 (16%), Positives = 64/203 (31%), Gaps = 21/203 (10%)
Query: 242 STGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF---VLVLNGVRESDAGVY 298
+ T + C + +G D+ + HDG + + + AG Y
Sbjct: 19 KSEETVILQCWSD-VRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTY 77
Query: 299 NCVAQNSEGSAES------VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP 352
C + + + ++ + P L +P AG SV + C
Sbjct: 78 RCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPT-VLAGESVTLSCSSR-SSYD 135
Query: 353 RISWSKDEAEFVEDRNHKIHRTGSLR-LYNIGP-QDSGLYRCTASNLLGEDVAEGY---- 406
S++ + G+ + + +GP G YRC S
Sbjct: 136 MYHLSREGEAHERRFSAGPKVNGTFQADFPLGPATHGGTYRCFGSFRDSPYEWSNSSDPL 195
Query: 407 -LTVTGENSVEPAPHTSREPSAS 428
++VTG + + + EPS+
Sbjct: 196 LVSVTG--NPSNSWPSPTEPSSE 216
Score = 45.0 bits (106), Expect = 6e-05
Identities = 26/196 (13%), Positives = 50/196 (25%), Gaps = 25/196 (12%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRG-------DLHVTVNAPPIFIQRPV 53
D S I + ++ G Y C Y+ D+ +T +
Sbjct: 55 HHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQP 114
Query: 54 STTYSTGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEHDG-FVLVLNGVRESDA 111
T G + ++C M +G + + + +G F +
Sbjct: 115 GPTVLAGESVTLSC--SSRSSYDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPATHG 172
Query: 112 GVYNCVAQN-------SEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC---- 160
G Y C S S + + N + +P + G+ +
Sbjct: 173 GTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEP---SSETGNPRHLHAAAEQ 229
Query: 161 KPDGEPLPRISWSKDE 176
K E +
Sbjct: 230 KLISEEDLNLDLVPRG 245
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 60.9 bits (147), Expect = 3e-11
Identities = 19/132 (14%), Positives = 35/132 (26%), Gaps = 36/132 (27%)
Query: 38 LHVTVNAPPIFI-----QRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD-- 90
H + PP + P + G+ R+ + G P P + W +
Sbjct: 6 HHSSRQEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPAR 65
Query: 91 -----------------------------HVTYEHDGFVLVLNGVRESDAGVYNCVAQNS 121
V D + + G + D GVY +N
Sbjct: 66 PAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNP 125
Query: 122 EGSAESVAMIRI 133
G + +++
Sbjct: 126 VGEDQVNLTVKV 137
Score = 59.4 bits (143), Expect = 1e-10
Identities = 17/114 (14%), Positives = 30/114 (26%), Gaps = 32/114 (28%)
Query: 145 PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT-------------- 190
P + AG+ + + G+P P + W K + +
Sbjct: 25 PDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDK 84
Query: 191 ------------------GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 226
+ +D G+Y T N +GED + V
Sbjct: 85 KLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 138
Score = 59.4 bits (143), Expect = 1e-10
Identities = 17/114 (14%), Positives = 30/114 (26%), Gaps = 32/114 (28%)
Query: 329 PFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRT-------------- 374
P + AG+ + + G+P P + W K + +
Sbjct: 25 PDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDK 84
Query: 375 ------------------GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
+ +D G+Y T N +GED + V
Sbjct: 85 KLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 138
Score = 59.0 bits (142), Expect = 2e-10
Identities = 18/125 (14%), Positives = 33/125 (26%), Gaps = 36/125 (28%)
Query: 229 PPIFI-----QRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD--------- 274
PP + P + G+ R+ + G P P + W +
Sbjct: 13 PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPE 72
Query: 275 ----------------------HVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESV 312
V D + + G + D GVY +N G +
Sbjct: 73 DTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVN 132
Query: 313 AMIRI 317
+++
Sbjct: 133 LTVKV 137
Score = 44.0 bits (103), Expect = 3e-05
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 7 STELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV 42
+ + G ++E G Y+ NP G + +L V V
Sbjct: 102 RSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 137
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 62.2 bits (150), Expect = 3e-11
Identities = 28/177 (15%), Positives = 49/177 (27%), Gaps = 38/177 (21%)
Query: 59 TGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVA 118
+G++ +TC ++ + W +G L HD +++ + D+G Y C
Sbjct: 13 SGTSVELTCPLD--SDENLKWEKNGQELPQK------HDKHLVLQDFSEVEDSGYYVCYT 64
Query: 119 QNSEGSAESVAMIRI----------------------NGHRAPRLVVKPFDMRA-PAGSS 155
S + R+ + S
Sbjct: 65 PASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGS 124
Query: 156 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 212
V + C G I W KD + K + L N G Y+C +
Sbjct: 125 VLLTC---GLTDKTIKWLKDGSIISPLNATK----NTWNLGNNAKDPRGTYQCQGAK 174
Score = 62.2 bits (150), Expect = 3e-11
Identities = 28/177 (15%), Positives = 49/177 (27%), Gaps = 38/177 (21%)
Query: 243 TGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVA 302
+G++ +TC ++ + W +G L HD +++ + D+G Y C
Sbjct: 13 SGTSVELTCPLD--SDENLKWEKNGQELPQK------HDKHLVLQDFSEVEDSGYYVCYT 64
Query: 303 QNSEGSAESVAMIRI----------------------NGHRAPRLVVKPFDMRA-PAGSS 339
S + R+ + S
Sbjct: 65 PASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGS 124
Query: 340 VEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 396
V + C G I W KD + K + L N G Y+C +
Sbjct: 125 VLLTC---GLTDKTIKWLKDGSIISPLNATK----NTWNLGNNAKDPRGTYQCQGAK 174
Score = 61.0 bits (147), Expect = 8e-11
Identities = 30/184 (16%), Positives = 53/184 (28%), Gaps = 41/184 (22%)
Query: 150 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGP-QDSGLYRC 208
+ +G+SVE+ C D + + W K+ E + ++ K L L + +DSG Y C
Sbjct: 11 SISGTSVELTCPLDSDE--NLKWEKNGQE-LPQKHDK-----HLVLQDFSEVEDSGYYVC 62
Query: 209 TASNLLG-----------------------EDVAEGYLTVTGAPPIFIQRPVS-TTYSTG 244
+D + G+ + V
Sbjct: 63 YTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGD 122
Query: 245 STSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN 304
+ +TC G + W DG+ + L + G Y C
Sbjct: 123 GSVLLTC---GLTDKTIKWLKDGSIISP-----LNATKNTWNLGNNAKDPRGTYQCQGAK 174
Query: 305 SEGS 308
+
Sbjct: 175 ETSN 178
Score = 44.9 bits (105), Expect = 3e-05
Identities = 19/145 (13%), Positives = 29/145 (20%), Gaps = 34/145 (23%)
Query: 6 SSTELVISGVQR-EHGGRYSCVAGNPAGVYRGDLHVTV---------------------- 42
LV+ E G Y C L V
Sbjct: 42 HDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAK 101
Query: 43 --NAPPIFIQRPVS-TTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF 99
+ + V + +TC G + W DG+ +
Sbjct: 102 KDGSQTNKAKNLVQVDGSRGDGSVLLTC---GLTDKTIKWLKDGSIISP-----LNATKN 153
Query: 100 VLVLNGVRESDAGVYNCVAQNSEGS 124
L + G Y C +
Sbjct: 154 TWNLGNNAKDPRGTYQCQGAKETSN 178
Score = 43.7 bits (102), Expect = 6e-05
Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 16/131 (12%)
Query: 334 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGP-QDSGLYRC 392
+ +G+SVE+ C D + + W K+ E + ++ K L L + +DSG Y C
Sbjct: 11 SISGTSVELTCPLDSDE--NLKWEKNGQE-LPQKHDK-----HLVLQDFSEVEDSGYYVC 62
Query: 393 TASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDT-----IHMAVKLASRE 447
YL ++ + +++ A K D V++
Sbjct: 63 YTPA--SNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSR 120
Query: 448 VDAAVNATINS 458
D +V T
Sbjct: 121 GDGSVLLTCGL 131
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 62.6 bits (152), Expect = 7e-11
Identities = 37/219 (16%), Positives = 61/219 (27%), Gaps = 18/219 (8%)
Query: 58 STGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEH-DGFVLVLNGVRESDAGVYN 115
I C +G+ H +G+ D E + + + AG Y+
Sbjct: 19 PKEKQVTICC--QGNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYS 76
Query: 116 CVAQNSEGSAES---VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW 172
C+ + E +E + ++ + P L V P +G V C+ D
Sbjct: 77 CIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPE-VISGEKVTFYCRLD-TATSMFLL 134
Query: 173 SKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE-----DVAEGYLTVTG 227
K+ + L + G YRC S + + L VTG
Sbjct: 135 LKEG-RSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVK--LLVTG 191
Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQ-MTWFH 265
P T+ + E W H
Sbjct: 192 DIENTSLAPEDPTFPADTWGTYLLTTETGLQKDHALWDH 230
Score = 58.0 bits (140), Expect = 3e-09
Identities = 28/160 (17%), Positives = 48/160 (30%), Gaps = 10/160 (6%)
Query: 242 STGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEH-DGFVLVLNGVRESDAGVYN 299
I C +G+ H +G+ D E + + + AG Y+
Sbjct: 19 PKEKQVTICC--QGNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYS 76
Query: 300 CVAQNSEGSAES---VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW 356
C+ + E +E + ++ + P L V P +G V C+ D
Sbjct: 77 CIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPE-VISGEKVTFYCRLD-TATSMFLL 134
Query: 357 SKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 396
K+ + L + G YRC S
Sbjct: 135 LKEG-RSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSY 173
Score = 54.1 bits (130), Expect = 5e-08
Identities = 28/180 (15%), Positives = 47/180 (26%), Gaps = 12/180 (6%)
Query: 3 DRRSSTELVISGVQREHGGRYSCVAGNPAGV----YRGDLHVTVNAPPIFIQRPVSTTYS 58
+R + + I + G+YSC+ DL VT +
Sbjct: 55 ERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVI 114
Query: 59 TGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVA 118
+G C ++ +G S F L V + G Y C
Sbjct: 115 SGEKVTFYCRLDTAT-SMFLLLKEGRSSHVQRGYGKVQAEF--PLGPVTTAHRGTYRCFG 171
Query: 119 QNS--EGSAESVA-MIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD 175
+ S S + + G + P D PA + + + D
Sbjct: 172 SYNNHAWSFPSEPVKLLVTG-DIENTSLAPEDPTFPADTWGTYLLTTETGL-QKDHALWD 229
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 61.4 bits (149), Expect = 9e-11
Identities = 31/164 (18%), Positives = 58/164 (35%), Gaps = 13/164 (7%)
Query: 58 STGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEH-DGFVLVLNGVRESDAGVYN 115
S G++ I C +G + + + D E + + + E AG Y
Sbjct: 17 SWGNSVTIWC--QGTLEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYR 74
Query: 116 CVAQNSEG-SAES--VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW 172
C ++ G S S + ++ + P L P + +G SV + C+ P+
Sbjct: 75 CYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPL-VTSGKSVTLLCQSR-SPMDTFLL 132
Query: 173 SKD-EAEFVEDRNHKIHRTGSLRLYNIGP---QDSGLYRCTASN 212
K+ A + + + + P G YRC +S+
Sbjct: 133 CKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSH 176
Score = 61.4 bits (149), Expect = 9e-11
Identities = 31/164 (18%), Positives = 58/164 (35%), Gaps = 13/164 (7%)
Query: 242 STGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEH-DGFVLVLNGVRESDAGVYN 299
S G++ I C +G + + + D E + + + E AG Y
Sbjct: 17 SWGNSVTIWC--QGTLEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYR 74
Query: 300 CVAQNSEG-SAES--VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW 356
C ++ G S S + ++ + P L P + +G SV + C+ P+
Sbjct: 75 CYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPL-VTSGKSVTLLCQSR-SPMDTFLL 132
Query: 357 SKD-EAEFVEDRNHKIHRTGSLRLYNIGP---QDSGLYRCTASN 396
K+ A + + + + P G YRC +S+
Sbjct: 133 CKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSH 176
Score = 45.6 bits (108), Expect = 2e-05
Identities = 17/124 (13%), Positives = 39/124 (31%), Gaps = 8/124 (6%)
Query: 5 RSSTELVISGVQREHGGRYSCVAGNPAGVYRG----DLHVTVNAPPIFIQRPVSTTYSTG 60
++ I + ++ GRY C +P G + +L +T + S ++G
Sbjct: 55 KNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSG 114
Query: 61 STSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG---FVLVLNGVRESDAGVYNCV 117
+ + C P+ + + + ++ V G Y C
Sbjct: 115 KSVTLLCQSR-SPMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCF 173
Query: 118 AQNS 121
+ +
Sbjct: 174 SSHG 177
Score = 41.7 bits (98), Expect = 3e-04
Identities = 26/169 (15%), Positives = 51/169 (30%), Gaps = 22/169 (13%)
Query: 151 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR--TGSLRLYNIGPQDSGLYRC 208
G+SV I C+ K+E+ DR + + + ++ +G YRC
Sbjct: 17 SWGNSVTIWCQGT-LEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRC 75
Query: 209 TA---------SNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLP 259
S+ L + Y + P P S ++G + + C P+
Sbjct: 76 YYRSPVGWSQPSDPLELVMTGAY-----SKPTLSALP-SPLVTSGKSVTLLCQSR-SPMD 128
Query: 260 QMTWFHDGNSLDSDDHVTYEHDG---FVLVLNGVRESDAGVYNCVAQNS 305
+ + + ++ V G Y C + +
Sbjct: 129 TFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHG 177
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 60.3 bits (146), Expect = 2e-10
Identities = 29/169 (17%), Positives = 59/169 (34%), Gaps = 14/169 (8%)
Query: 54 STTYSTGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEH-DGFVLVLNGVRESDA 111
+ S G++ I C +G Q +G+ D E + + + E A
Sbjct: 13 GSVISRGNSVTIRC--QGTLEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHA 70
Query: 112 GVYNCVAQNSEG-SAES--VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP 168
G Y C + G S S + ++ + P L P + +G +V + C
Sbjct: 71 GRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPV-VTSGENVTLQCGSR-LRFD 128
Query: 169 RISWSKD-EAEFVEDRNHKIHRTGS----LRLYNIGPQDSGLYRCTASN 212
R +++ + + + ++ +G + + P + RC S
Sbjct: 129 RFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSR 177
Score = 60.3 bits (146), Expect = 2e-10
Identities = 29/169 (17%), Positives = 59/169 (34%), Gaps = 14/169 (8%)
Query: 238 STTYSTGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEH-DGFVLVLNGVRESDA 295
+ S G++ I C +G Q +G+ D E + + + E A
Sbjct: 13 GSVISRGNSVTIRC--QGTLEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHA 70
Query: 296 GVYNCVAQNSEG-SAES--VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLP 352
G Y C + G S S + ++ + P L P + +G +V + C
Sbjct: 71 GRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPV-VTSGENVTLQCGSR-LRFD 128
Query: 353 RISWSKD-EAEFVEDRNHKIHRTGS----LRLYNIGPQDSGLYRCTASN 396
R +++ + + + ++ +G + + P + RC S
Sbjct: 129 RFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSR 177
Score = 44.9 bits (106), Expect = 4e-05
Identities = 22/128 (17%), Positives = 36/128 (28%), Gaps = 9/128 (7%)
Query: 5 RSSTELVISGVQREHGGRYSCVAGNPAGVYRG----DLHVTVNAPPIFIQRPVSTTYSTG 60
++ I + H GRY C +PAG +L VT + S ++G
Sbjct: 55 KNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSG 114
Query: 61 STSRITCLVEGHPLPQMTWFHDGNSLDSD--DHVTYEHDGF--VLVLNGVRESDAGVYNC 116
+ C +G+ S D F + + V S + C
Sbjct: 115 ENVTLQCGSRLRFDR-FILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRC 173
Query: 117 VAQNSEGS 124
Sbjct: 174 YGSRRHIL 181
Score = 42.2 bits (99), Expect = 3e-04
Identities = 27/168 (16%), Positives = 47/168 (27%), Gaps = 13/168 (7%)
Query: 151 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH--RTGSLRLYNIGPQDSGLYRC 208
G+SV I C+ K+ + D + + + ++ +G YRC
Sbjct: 17 SRGNSVTIRCQGT-LEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRC 75
Query: 209 TASNLLGE----DVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWF 264
+ G D E +T P P S ++G + C
Sbjct: 76 YYYSPAGWSEPSDPLELVVTGFYNKPTLSALP-SPVVTSGENVTLQCGSRLRFDR-FILT 133
Query: 265 HDGNSLDSD--DHVTYEHDGF--VLVLNGVRESDAGVYNCVAQNSEGS 308
+G+ S D F + + V S + C
Sbjct: 134 EEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHIL 181
Score = 28.7 bits (64), Expect = 7.0
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 3/67 (4%)
Query: 335 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIH--RTGSLRLYNIGPQDSGLYRC 392
G+SV I C+ K+ + D + + + ++ +G YRC
Sbjct: 17 SRGNSVTIRCQGT-LEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRC 75
Query: 393 TASNLLG 399
+ G
Sbjct: 76 YYYSPAG 82
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 60.6 bits (146), Expect = 2e-10
Identities = 26/210 (12%), Positives = 49/210 (23%), Gaps = 40/210 (19%)
Query: 145 PFDMRAPAGSSVEIPCK-------PDGEPLPRISWSKDEAEFVEDRN------------- 184
+ G V +PC P + W +D
Sbjct: 7 QKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPE 66
Query: 185 ---------HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE--DVAEGYLTVT-----GA 228
+ SL + + +D+G Y + L +
Sbjct: 67 TQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEK 126
Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLN 288
P I P+ + T + + E P +W + S + L L
Sbjct: 127 PDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSS----ELTLT 182
Query: 289 GVRESDAGVYNCVAQNSEGSAESVAMIRIN 318
E C + + +++N
Sbjct: 183 PRPEDHGTNLTCQMKRQGAQVTTERTVQLN 212
Score = 59.1 bits (142), Expect = 6e-10
Identities = 22/141 (15%), Positives = 42/141 (29%), Gaps = 12/141 (8%)
Query: 2 DDRRSSTELVISGVQREHGGRYSCVAGNPAGV----YRGDLHVTVNAPPIFIQRPVSTTY 57
D ++ + L I + E G Y V + L++ V A
Sbjct: 76 DVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPL 135
Query: 58 STGSTSRITCLV----EGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGV 113
+G +R++C + E P +W + S + L L E
Sbjct: 136 ESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSS----ELTLTPRPEDHGTN 191
Query: 114 YNCVAQNSEGSAESVAMIRIN 134
C + + +++N
Sbjct: 192 LTCQMKRQGAQVTTERTVQLN 212
Score = 48.7 bits (115), Expect = 2e-06
Identities = 30/214 (14%), Positives = 51/214 (23%), Gaps = 39/214 (18%)
Query: 233 IQRPVSTTYSTGSTSRITCLVE-------GHPLPQMTWFHDGNSLDSDDHVTYEHDGFV- 284
+Q S T G + C P + WF DG + V +
Sbjct: 4 LQVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRV 63
Query: 285 --------------------LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPR 324
L + R D G Y + S ++N
Sbjct: 64 KPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTAL 123
Query: 325 LVVKPFDM--RAPAGSSVEIPCKP----DGEPLPRISWSKDEAEFVEDRNHKIHRTGSLR 378
+ +G + C + P SW+ + + + + R+ L
Sbjct: 124 IEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNA---LSPLDPETTRSSELT 180
Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEG--YLTVT 410
L C + E L V+
Sbjct: 181 LTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNVS 214
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 57.7 bits (139), Expect = 3e-10
Identities = 17/120 (14%), Positives = 33/120 (27%), Gaps = 17/120 (14%)
Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI----------- 371
L + G ++ + C + W + + +
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 372 -HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKP 430
S+ + N+ QD G+Y+C + E + V R PS +P
Sbjct: 62 SANQLSITVPNVTLQDEGVYKCLHYS-DSVSTKEVKVIVL----ATMKGEFCRYPSHWRP 116
Score = 56.2 bits (135), Expect = 1e-09
Identities = 15/112 (13%), Positives = 30/112 (26%), Gaps = 13/112 (11%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI----------- 187
L + G ++ + C + W + + +
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 188 -HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVS 238
S+ + N+ QD G+Y+C + E + V R S
Sbjct: 62 SANQLSITVPNVTLQDEGVYKCLHYS-DSVSTKEVKVIVLATMKGEFCRYPS 112
Score = 47.3 bits (112), Expect = 1e-06
Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 11/94 (11%)
Query: 46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDH----------VTY 94
+ T G T + C+ + W G ++ +++ + +
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 95 EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESV 128
+ + + V D GVY C+ + S + V
Sbjct: 62 SANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEV 95
Score = 47.3 bits (112), Expect = 1e-06
Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 11/94 (11%)
Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDH----------VTY 278
+ T G T + C+ + W G ++ +++ + +
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 279 EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESV 312
+ + + V D GVY C+ + S + V
Sbjct: 62 SANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEV 95
Score = 33.0 bits (75), Expect = 0.14
Identities = 7/48 (14%), Positives = 14/48 (29%), Gaps = 1/48 (2%)
Query: 10 LVISGVQREHGGRYSCVA-GNPAGVYRGDLHVTVNAPPIFIQRPVSTT 56
+ + V + G Y C+ + + V F + P
Sbjct: 68 ITVPNVTLQDEGVYKCLHYSDSVSTKEVKVIVLATMKGEFCRYPSHWR 115
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 60.7 bits (147), Expect = 6e-10
Identities = 45/316 (14%), Positives = 94/316 (29%), Gaps = 45/316 (14%)
Query: 49 IQRPVSTTYSTGSTSRITCLVEG-HPLPQMTWF----------HDGNSLDSDDHVTYEHD 97
IQ S + + G ++ + C V P+ + WF ++ T
Sbjct: 7 IQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSES 66
Query: 98 G------FVLVLNGVRESDAGVYNCVAQNSEGSA-----ESVAMIRINGHRAPRLVVKPF 146
F + ++ + +DAG Y CV + + + + +V P
Sbjct: 67 TKRENMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPA 126
Query: 147 DMRAPAGSSVEIPCK-PDGEPLP-RISWSKDEAE--------FVEDRNHKIHRTGSLRLY 196
RA +V C+ P + W K+ E + + ++
Sbjct: 127 A-RATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVV 185
Query: 197 NIGPQDSGLYRCTASN--LLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVE 254
C ++ L G+ + + +TC V
Sbjct: 186 LTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVR 245
Query: 255 G-HPLP-QMTWFHDGNSLDSDDHVTYEHDG---F----VLVLNGVRESDAGVYNC-VAQN 304
+P Q+TW +GN ++ T + + L++N D C V +
Sbjct: 246 KFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHD 305
Query: 305 SEGSAESVAMIRINGH 320
+ + ++++
Sbjct: 306 GQPAVSKSHDLKVSTR 321
Score = 57.3 bits (138), Expect = 8e-09
Identities = 30/195 (15%), Positives = 60/195 (30%), Gaps = 22/195 (11%)
Query: 5 RSSTE--LVISGVQREHGGRYSCV---AGNPAGVYRGDLHVTVN---APPIFIQRPVSTT 56
R + + + IS + G Y CV G+P ++ ++ P + +
Sbjct: 69 RENMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAAR 128
Query: 57 YSTGSTSRITCLVEG--HPLPQMTWFHDGNSLDSDDHVTYEHDG--------FVLVLNGV 106
+ T TC G + WF +GN L SD + G +
Sbjct: 129 ATPQHTVSFTCESHGFSPRDITLKWFKNGNEL-SDFQTNVDPVGESVSYSIHSTAKVVLT 187
Query: 107 RESDAGVYNCVAQNSEGSAE-SVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK-PDG 164
RE C + + ++ ++ A + V + C+
Sbjct: 188 REDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKF 247
Query: 165 EPLP-RISWSKDEAE 178
P +++W ++
Sbjct: 248 YPQRLQLTWLENGNV 262
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 56.4 bits (135), Expect = 1e-09
Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 17/103 (16%)
Query: 142 VVKPFDMRAPAGSSVEIPCKPDGEPL---PRISWSKDEA-------------EFVEDRNH 185
+ KP + G + K +G+ L P I W K + + +
Sbjct: 16 LKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSAS 75
Query: 186 KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGA 228
++ T L + + D G YR D + V
Sbjct: 76 NVY-TVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAP 117
Score = 55.6 bits (133), Expect = 2e-09
Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 17/100 (17%)
Query: 326 VVKPFDMRAPAGSSVEIPCKPDGEPL---PRISWSKDEA-------------EFVEDRNH 369
+ KP + G + K +G+ L P I W K + + +
Sbjct: 16 LKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSAS 75
Query: 370 KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
++ T L + + D G YR D + V
Sbjct: 76 NVY-TVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDV 114
Score = 51.0 bits (121), Expect = 6e-08
Identities = 22/120 (18%), Positives = 38/120 (31%), Gaps = 17/120 (14%)
Query: 219 AEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPL---PQMTWFHDGN---SLDS 272
+ G +F+++P S + TG + + V G L P + WF S
Sbjct: 2 SSGSSGAEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKS 61
Query: 273 DDHVTYEHDG--------FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPR 324
+++ L + V D G Y + + I + APR
Sbjct: 62 GARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDV---EAPR 118
Score = 50.6 bits (120), Expect = 8e-08
Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 17/110 (15%)
Query: 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPL---PQMTWFHDGN---SLDSDDHVTYEHDG 98
+F+++P S + TG + + V G L P + WF S +++
Sbjct: 12 TGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESH 71
Query: 99 --------FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPR 140
L + V D G Y + + I + APR
Sbjct: 72 NSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDV---EAPR 118
Score = 31.7 bits (71), Expect = 0.30
Identities = 9/42 (21%), Positives = 12/42 (28%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAP 45
+ EL I V G Y ++ V AP
Sbjct: 76 NVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAP 117
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 55.6 bits (134), Expect = 7e-09
Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 12/161 (7%)
Query: 58 STGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEH-DGFVLVLNGVRESDAGVYN 115
I C +G+ H +G+ D E + + + AG Y+
Sbjct: 16 PKEKQVTICC--QGNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYS 73
Query: 116 CVAQNSEG-SAES--VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW 172
C+ + E S S + ++ + P L V P +G V C+ D
Sbjct: 74 CIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPE-VISGEKVTFYCRLD-TATSMFLL 131
Query: 173 SKD-EAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 212
K+ + V+ K+ L + G YRC S
Sbjct: 132 LKEGRSSHVQRGYGKVQ--AEFPLGPVTTAHRGTYRCFGSY 170
Score = 55.6 bits (134), Expect = 7e-09
Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 12/161 (7%)
Query: 242 STGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEH-DGFVLVLNGVRESDAGVYN 299
I C +G+ H +G+ D E + + + AG Y+
Sbjct: 16 PKEKQVTICC--QGNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYS 73
Query: 300 CVAQNSEG-SAES--VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW 356
C+ + E S S + ++ + P L V P +G V C+ D
Sbjct: 74 CIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPE-VISGEKVTFYCRLD-TATSMFLL 131
Query: 357 SKD-EAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 396
K+ + V+ K+ L + G YRC S
Sbjct: 132 LKEGRSSHVQRGYGKVQ--AEFPLGPVTTAHRGTYRCFGSY 170
Score = 47.9 bits (114), Expect = 3e-06
Identities = 23/133 (17%), Positives = 37/133 (27%), Gaps = 13/133 (9%)
Query: 3 DRRSSTELVISGVQREHGGRYSCVAGNPAGVYRG----DLHVTVNAPPIFIQRPVSTTYS 58
+R + + I + G+YSC+ DL VT +
Sbjct: 52 ERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVI 111
Query: 59 TGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF--VLVLNGVRESDAGVYNC 116
+G C ++ +G S HV + L V + G Y C
Sbjct: 112 SGEKVTFYCRLDTAT-SMFLLLKEGRS----SHVQRGYGKVQAEFPLGPVTTAHRGTYRC 166
Query: 117 VAQNS--EGSAES 127
+ S S
Sbjct: 167 FGSYNNHAWSFPS 179
Score = 42.5 bits (100), Expect = 2e-04
Identities = 27/172 (15%), Positives = 47/172 (27%), Gaps = 19/172 (11%)
Query: 151 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHR--TGSLRLYNIGPQDSGLYRC 208
P V I C+ + + + F DR R + ++ + +G Y C
Sbjct: 16 PKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSC 74
Query: 209 TASNLLGE----DVAEGYLTVTGA-PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTW 263
++ + L VT + +G C ++
Sbjct: 75 IYRVGELWSEPSNLLD--LVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTAT-SMFLL 131
Query: 264 FHDGNSLDSDDHVTYEHDGF--VLVLNGVRESDAGVYNCVAQNS--EGSAES 311
+G S HV + L V + G Y C + S S
Sbjct: 132 LKEGRS----SHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPS 179
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 57.4 bits (138), Expect = 9e-09
Identities = 47/268 (17%), Positives = 84/268 (31%), Gaps = 33/268 (12%)
Query: 41 TVNAPPIFI-QRPVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDH--VTYE 95
P + I Q T ++ CLV G+ P Q+TW DG +D D T +
Sbjct: 4 DFTPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQ 63
Query: 96 HDGF-----VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPR--LVVKPFDM 148
L L+ Y C + E + + + +P
Sbjct: 64 EGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPF 123
Query: 149 RAPAGSSVEIPCK----PDGEPLPRISWSKDEAEFV--------EDRNHKIHRTGSLRLY 196
S I C + +++WS+ + V + RN + T +L +
Sbjct: 124 DLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVG 183
Query: 197 NIGPQDSGLYRCTASNLLGEDVAEGYLTVTG----APPIFIQRPVSTTYSTGSTSRITCL 252
+ Y+C ++ T T AP ++ + + CL
Sbjct: 184 TRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFAT-PEWPGSRDKRTLACL 242
Query: 253 VEGHPLPQ---MTWFHDGNSLDSDDHVT 277
++ +P+ + W H+ L H T
Sbjct: 243 IQN-FMPEDISVQWLHNEVQLPDARHST 269
Score = 41.6 bits (97), Expect = 7e-04
Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 10/97 (10%)
Query: 5 RSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVN-----APPIFIQRPVSTTYST 59
++ L + G Y C +P T AP ++ +
Sbjct: 175 TVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFAT-PEWPGS 233
Query: 60 GSTSRITCLVEGHPLPQ---MTWFHDGNSLDSDDHVT 93
+ CL++ +P+ + W H+ L H T
Sbjct: 234 RDKRTLACLIQN-FMPEDISVQWLHNEVQLPDARHST 269
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 54.8 bits (132), Expect = 2e-08
Identities = 29/166 (17%), Positives = 53/166 (31%), Gaps = 15/166 (9%)
Query: 58 STGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYE-HDGFVLVLNGVRESDAGVYN 115
+ GS + C +G Q + + + + E + + G Y
Sbjct: 17 TQGSPVTLRC--QGGQETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYR 74
Query: 116 CVAQNSEG--SAES--VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRIS 171
C + S S + ++ + P L +P +G +V + C
Sbjct: 75 CYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQP-SPVVNSGGNVTLQCDSQVAF-DGFI 132
Query: 172 WSKD-EAEFVEDRNHKIHRTGS----LRLYNIGPQDSGLYRCTASN 212
K+ E E + N + H GS + + P YRC A +
Sbjct: 133 LCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYD 178
Score = 54.8 bits (132), Expect = 2e-08
Identities = 29/166 (17%), Positives = 53/166 (31%), Gaps = 15/166 (9%)
Query: 242 STGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYE-HDGFVLVLNGVRESDAGVYN 299
+ GS + C +G Q + + + + E + + G Y
Sbjct: 17 TQGSPVTLRC--QGGQETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYR 74
Query: 300 CVAQNSEG--SAES--VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRIS 355
C + S S + ++ + P L +P +G +V + C
Sbjct: 75 CYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQP-SPVVNSGGNVTLQCDSQVAF-DGFI 132
Query: 356 WSKD-EAEFVEDRNHKIHRTGS----LRLYNIGPQDSGLYRCTASN 396
K+ E E + N + H GS + + P YRC A +
Sbjct: 133 LCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYD 178
Score = 46.4 bits (110), Expect = 1e-05
Identities = 22/132 (16%), Positives = 37/132 (28%), Gaps = 10/132 (7%)
Query: 2 DDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRG-----DLHVTVNAPPIFIQRPVSTT 56
+ + I + EH GRY C G+ +L VT + S
Sbjct: 52 QELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPV 111
Query: 57 YSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF----VLVLNGVRESDAG 112
++G + C + +G + H + + V S
Sbjct: 112 VNSGGNVTLQCDSQVAF-DGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRW 170
Query: 113 VYNCVAQNSEGS 124
Y C A +S
Sbjct: 171 WYRCYAYDSNSP 182
Score = 42.9 bits (101), Expect = 2e-04
Identities = 26/169 (15%), Positives = 50/169 (29%), Gaps = 14/169 (8%)
Query: 151 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRN--HKIHRTGSLRLYNIGPQDSGLYRC 208
GS V + C+ +++ ++ + G + +I + +G YRC
Sbjct: 17 TQGSPVTLRCQGGQ-ETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRC 75
Query: 209 TASNLLGE-----DVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTW 263
+ D E +T P +P S ++G + C +
Sbjct: 76 YYGSDTAGRSESSDPLELVVTGAYIKPTLSAQP-SPVVNSGGNVTLQCDSQVAF-DGFIL 133
Query: 264 FHDGNSLDSDDHVTYEHDGF----VLVLNGVRESDAGVYNCVAQNSEGS 308
+G + H + + V S Y C A +S
Sbjct: 134 CKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSP 182
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 54.1 bits (129), Expect = 3e-08
Identities = 19/123 (15%), Positives = 32/123 (26%), Gaps = 13/123 (10%)
Query: 143 VKPFDMRAP-------AGSSVEIPCKPDG-EPLPRISWSKDEAEFVEDRNHKIHRTGSLR 194
VKP + P G+S ++ C+ + + W + ++ L
Sbjct: 5 VKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDT--GRSVLT 62
Query: 195 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVE 254
+ N +G C S L V P VS + C
Sbjct: 63 VRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLT---VSPAALVPGDPEVACTAH 119
Query: 255 GHP 257
Sbjct: 120 KVT 122
Score = 49.5 bits (117), Expect = 1e-06
Identities = 24/145 (16%), Positives = 45/145 (31%), Gaps = 14/145 (9%)
Query: 41 TVNAPPIFIQRPVSTTY-STGSTSRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYEHDG 98
++ P+ ++ P + G++ ++TC + + W SL + +
Sbjct: 2 SLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQS---DTGR 58
Query: 99 FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEI 158
VL + S AG CV + + + + +L V P A E+
Sbjct: 59 SVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFP-NQLTVSP---AALVPGDPEV 114
Query: 159 PCK-----PDGEPLPRISWSKDEAE 178
C P S E
Sbjct: 115 ACTAHKVTPVDPNALSFSLLVGGQE 139
Score = 48.7 bits (115), Expect = 2e-06
Identities = 23/145 (15%), Positives = 41/145 (28%), Gaps = 13/145 (8%)
Query: 224 TVTGAPPIFIQRPVSTTYSTGSTSRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYEHDG 282
++ P + G++ ++TC + + W SL + +
Sbjct: 2 SLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQS---DTGR 58
Query: 283 FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEI 342
VL + S AG CV + + + + +L V P A E+
Sbjct: 59 SVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFP-NQLTVSP---AALVPGDPEV 114
Query: 343 PCK-----PDGEPLPRISWSKDEAE 362
C P S E
Sbjct: 115 ACTAHKVTPVDPNALSFSLLVGGQE 139
Score = 47.2 bits (111), Expect = 7e-06
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 10/91 (10%)
Query: 327 VKPFDMRAP-------AGSSVEIPCKPDG-EPLPRISWSKDEAEFVEDRNHKIHRTGSLR 378
VKP + P G+S ++ C+ + + W + ++ L
Sbjct: 5 VKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDT--GRSVLT 62
Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
+ N +G C S L V
Sbjct: 63 VRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 93
Score = 35.6 bits (81), Expect = 0.045
Identities = 8/64 (12%), Positives = 16/64 (25%), Gaps = 2/64 (3%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLV 69
L + G CV ++ + + V A P + + + C
Sbjct: 61 LTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSPAALVPGDPE--VACTA 118
Query: 70 EGHP 73
Sbjct: 119 HKVT 122
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 53.8 bits (129), Expect = 4e-08
Identities = 28/184 (15%), Positives = 54/184 (29%), Gaps = 17/184 (9%)
Query: 225 VTGA-PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF 283
G + + T + C + + H + + EH
Sbjct: 2 HEGVHRKPSLLAHPGPLVKSEETVILQC--WSDVMFEHFLLHREGMFNDTLRLIGEHHDG 59
Query: 284 V----LVLNGVRESDAGVYNCVAQNSEGSA------ESVAMIRINGHRAPRLVVKPFDMR 333
V ++ + + AG Y C + + + ++ I + P L +P
Sbjct: 60 VSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPT- 118
Query: 334 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLR-LYNIGP-QDSGLYR 391
AG +V + C S++ G+ + + +GP G YR
Sbjct: 119 VLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYR 177
Query: 392 CTAS 395
C S
Sbjct: 178 CFGS 181
Score = 52.2 bits (125), Expect = 1e-07
Identities = 27/184 (14%), Positives = 53/184 (28%), Gaps = 16/184 (8%)
Query: 40 VTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF 99
+ + T + C + + H + + EH
Sbjct: 2 HEGVHRKPSLLAHPGPLVKSEETVILQC--WSDVMFEHFLLHREGMFNDTLRLIGEHHDG 59
Query: 100 V----LVLNGVRESDAGVYNCVAQNSEGSA------ESVAMIRINGHRAPRLVVKPFDMR 149
V ++ + + AG Y C + + + ++ I + P L +P
Sbjct: 60 VSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPT- 118
Query: 150 APAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLR-LYNIGP-QDSGLYR 207
AG +V + C S++ G+ + + +GP G YR
Sbjct: 119 VLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYR 177
Query: 208 CTAS 211
C S
Sbjct: 178 CFGS 181
Score = 48.8 bits (116), Expect = 2e-06
Identities = 18/132 (13%), Positives = 34/132 (25%), Gaps = 9/132 (6%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRG-------DLHVTVNAPPIFIQRPV 53
D S IS + ++ G Y C Y+ D+ + +
Sbjct: 56 HHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQP 115
Query: 54 STTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG-FVLVLNGVRESDAG 112
T G ++C +G + + + +G F + G
Sbjct: 116 GPTVLAGENVTLSCSSR-SSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGG 174
Query: 113 VYNCVAQNSEGS 124
Y C +
Sbjct: 175 TYRCFGSFHDSP 186
Score = 43.7 bits (103), Expect = 7e-05
Identities = 26/184 (14%), Positives = 48/184 (26%), Gaps = 14/184 (7%)
Query: 136 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---- 191
HR P L+ P + +V + C D ++ R H G
Sbjct: 6 HRKPSLLAHP-GPLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKA 63
Query: 192 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGY-----LTVTGA-PPIFIQRPVSTTYSTGS 245
+ + + +G YRC S + + G + T G
Sbjct: 64 NFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGE 123
Query: 246 TSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDG-FVLVLNGVRESDAGVYNCVAQN 304
++C +G + + + +G F + G Y C
Sbjct: 124 NVTLSCSSR-SSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGSF 182
Query: 305 SEGS 308
+
Sbjct: 183 HDSP 186
Score = 30.6 bits (69), Expect = 1.6
Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 6/81 (7%)
Query: 320 HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG---- 375
HR P L+ P + +V + C D ++ R H G
Sbjct: 6 HRKPSLLAHP-GPLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKA 63
Query: 376 SLRLYNIGPQDSGLYRCTASN 396
+ + + +G YRC S
Sbjct: 64 NFSISRMTQDLAGTYRCYGSV 84
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 53.9 bits (129), Expect = 5e-08
Identities = 37/206 (17%), Positives = 60/206 (29%), Gaps = 44/206 (21%)
Query: 142 VVKPFDMRAPAGSSVEIPCK-----PDGEPLPRISW-------SKDEAEFVEDRNHKIHR 189
++ P +V I C P I+W K+ F +H+
Sbjct: 7 MMAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAF 66
Query: 190 TG--------------SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQR 235
SLRL I +++G YRC + L V +P +
Sbjct: 67 RPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLL 126
Query: 236 PVSTTYSTGSTSRITCLVEG-HPLP-QMTWFHDGNSLDSDDHVTY---------EHDGF- 283
+ + C G +P +TW ++ DG
Sbjct: 127 DQVG--MKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTF 184
Query: 284 ----VLVLNGVRESDAGVYNCVAQNS 305
L LN +E VY CV +++
Sbjct: 185 NVTSCLKLNSSQEDPGTVYQCVVRHA 210
Score = 53.1 bits (127), Expect = 1e-07
Identities = 26/128 (20%), Positives = 40/128 (31%), Gaps = 17/128 (13%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLV 69
L + G+Q E G Y C +G + + V A P + C
Sbjct: 84 LRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQVGMKEN-EDKYMCES 142
Query: 70 EG-HPLP-QMTWFHDGNSLDSDDHVTY---------EHDGF-----VLVLNGVRESDAGV 113
G +P +TW ++ DG L LN +E V
Sbjct: 143 SGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTV 202
Query: 114 YNCVAQNS 121
Y CV +++
Sbjct: 203 YQCVVRHA 210
Score = 41.2 bits (96), Expect = 8e-04
Identities = 36/249 (14%), Positives = 64/249 (25%), Gaps = 66/249 (26%)
Query: 36 GDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHP-----LPQMTWFHDGNSLDSDD 90
DL V + A + I C + +TWF + D +
Sbjct: 1 ADLKVEMMAGG-------TQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEV 53
Query: 91 HVTYEHDG--------------------FVLVLNGVRESDAGVYNCVAQNSEGSAESVAM 130
V L L G++ +AG Y C + A+
Sbjct: 54 KVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQ 113
Query: 131 IRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDG-EPLP-RISWSKDEAEFVEDRNHKIH 188
+ + +P + D + + C+ G P I+W K +F
Sbjct: 114 LEVVA--SPASRLLL-DQVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEI--- 167
Query: 189 RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSR 248
+ + G + T+ L + S+ G+
Sbjct: 168 -SEDVITGPTIKNMDGTFNVTS-----------CLKLN-----------SSQEDPGTV-- 202
Query: 249 ITCLVEGHP 257
C+V H
Sbjct: 203 YQCVVR-HA 210
Score = 35.0 bits (80), Expect = 0.072
Identities = 26/195 (13%), Positives = 51/195 (26%), Gaps = 34/195 (17%)
Query: 227 GAPPIFIQRPVSTTYSTGSTSRITCLVEGHP-----LPQMTWFHDGNSLDSDDHVTYEHD 281
+ + + I C + +TWF + D + V
Sbjct: 1 ADLKVEMMAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFG 60
Query: 282 G--------------------FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHR 321
L L G++ +AG Y C + A+ + +
Sbjct: 61 DHQEAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVA-- 118
Query: 322 APRLVVKPFDMRAPAGSSVEIPCKPDG-EPLP-RISWSKDEAEFVEDRNHKIHRTGSLRL 379
+P + D + + C+ G P I+W K +F + +
Sbjct: 119 SPASRLLL-DQVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEI----SEDVIT 173
Query: 380 YNIGPQDSGLYRCTA 394
G + T+
Sbjct: 174 GPTIKNMDGTFNVTS 188
Score = 34.7 bits (79), Expect = 0.092
Identities = 22/131 (16%), Positives = 36/131 (27%), Gaps = 28/131 (21%)
Query: 326 VVKPFDMRAPAGSSVEIPCK-----PDGEPLPRISW-------SKDEAEFVEDRNHKIHR 373
++ P +V I C P I+W K+ F +H+
Sbjct: 7 MMAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAF 66
Query: 374 TG--------------SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG--ENSVEP 417
SLRL I +++G YRC + L V + +
Sbjct: 67 RPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLL 126
Query: 418 APHTSREPSAS 428
+E
Sbjct: 127 DQVGMKENEDK 137
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END
product-specific receptor; RAGE, AGER, scavenger
receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3cjj_A
2l7u_A* 2e5e_A
Length = 581
Score = 55.3 bits (133), Expect = 7e-08
Identities = 38/171 (22%), Positives = 69/171 (40%), Gaps = 28/171 (16%)
Query: 147 DMRAPAGSSVEIPCKPD-GEPLPRISWSKDEAEFV------------EDRNHKIHRTGSL 193
++ A G + + CK +P R+ W + D ++ GSL
Sbjct: 375 NITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSL 434
Query: 194 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLT----VTGAPPIFIQRPVSTTYSTGSTSRI 249
L +G QD G++RC A N G++ Y + G P I ++ + G +++
Sbjct: 435 FLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDS---ASELTAGVPNKV 491
Query: 250 -TCLVEG-HPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVY 298
TC+ EG +P ++W DG L ++ G + R + G++
Sbjct: 492 GTCVSEGSYPAGTLSWHLDGKPLVPNEK------GVSVKEQTRRHPETGLF 536
Score = 39.2 bits (91), Expect = 0.007
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 13/89 (14%)
Query: 331 DMRAPAGSSVEIPCKPD-GEPLPRISWSKDEAEFV------------EDRNHKIHRTGSL 377
++ A G + + CK +P R+ W + D ++ GSL
Sbjct: 375 NITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSL 434
Query: 378 RLYNIGPQDSGLYRCTASNLLGEDVAEGY 406
L +G QD G++RC A N G++ Y
Sbjct: 435 FLPAVGIQDEGIFRCQAMNRNGKETKSNY 463
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 50.3 bits (120), Expect = 9e-08
Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 13/95 (13%)
Query: 147 DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI------------HRTGSLR 194
++ G + + C+ D + WS + + + K S+
Sbjct: 15 NVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSIS 74
Query: 195 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAP 229
+ ++ D G Y C+ + ++ YLTV G P
Sbjct: 75 VSDVSLSDEGQYTCSLFT-MPVKTSKAYLTVLGVP 108
Score = 47.6 bits (113), Expect = 9e-07
Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 13/91 (14%)
Query: 331 DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKI------------HRTGSLR 378
++ G + + C+ D + WS + + + K S+
Sbjct: 15 NVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSIS 74
Query: 379 LYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
+ ++ D G Y C+ + ++ YLTV
Sbjct: 75 VSDVSLSDEGQYTCSLFT-MPVKTSKAYLTV 104
Score = 44.1 bits (104), Expect = 1e-05
Identities = 17/104 (16%), Positives = 30/104 (28%), Gaps = 12/104 (11%)
Query: 41 TVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTY------ 94
V + T G T+ +TC V+ + + W + D
Sbjct: 2 KVKGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRI 61
Query: 95 -----EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 133
+ ++ V SD G Y C + S A + +
Sbjct: 62 ELVRASWHELSISVSDVSLSDEGQYTCSL-FTMPVKTSKAYLTV 104
Score = 42.5 bits (100), Expect = 5e-05
Identities = 16/101 (15%), Positives = 29/101 (28%), Gaps = 12/101 (11%)
Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTY--------- 278
+ T G T+ +TC V+ + + W + D
Sbjct: 5 GSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELV 64
Query: 279 --EHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRI 317
+ ++ V SD G Y C + S A + +
Sbjct: 65 RASWHELSISVSDVSLSDEGQYTCSL-FTMPVKTSKAYLTV 104
Score = 31.0 bits (70), Expect = 0.50
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP 46
+ +S V G+Y+C V ++TV P
Sbjct: 73 ISVSDVSLSDEGQYTCSL-FTMPVKTSKAYLTVLGVP 108
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 52.1 bits (124), Expect = 1e-07
Identities = 24/172 (13%), Positives = 47/172 (27%), Gaps = 12/172 (6%)
Query: 141 LVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGP 200
+ V+P + S+E+ C E ++ +
Sbjct: 5 VHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGL-----ETSLNKILLDEQAQWKHYLVSNI 59
Query: 201 QDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEG-HPLP 259
+ +C + ++ ++V P I T + G + I C V PL
Sbjct: 60 SHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLD 119
Query: 260 QMT--WFHDGNSLDSDDHVTYEHDGF----VLVLNGVRESDAGVYNCVAQNS 305
+T F +L + RE ++C+A
Sbjct: 120 SLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLD 171
Score = 41.3 bits (96), Expect = 5e-04
Identities = 20/123 (16%), Positives = 33/123 (26%), Gaps = 8/123 (6%)
Query: 7 STELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQ-RPVSTTYSTGSTSRI 65
+ H C + +V+V PP + T + G + I
Sbjct: 49 AQWKHYLVSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTI 108
Query: 66 TCLVEG-HPLPQMT--WFHDGNSLDSDDHVTYEHDGF----VLVLNGVRESDAGVYNCVA 118
C V PL +T F +L + RE ++C+A
Sbjct: 109 ECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLA 168
Query: 119 QNS 121
Sbjct: 169 VLD 171
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 51.0 bits (122), Expect = 2e-07
Identities = 33/163 (20%), Positives = 55/163 (33%), Gaps = 17/163 (10%)
Query: 54 STTYSTGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEHDGFVLVLNGVRESDAG 112
S+ + C +G P + +S D V L + ++ S AG
Sbjct: 16 SSLVPLEKPVTLRC--QGPPGVDLYRLEKLSSSRYQDQAV--------LFIPAMKRSLAG 65
Query: 113 VYNCVAQNSEG-SAESVA-MIRING-HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPR 169
Y C QN S S + G P L +P +G V + C+ +
Sbjct: 66 RYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQP-GPAVSSGGDVTLQCQTR-YGFDQ 123
Query: 170 ISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 212
+ K E + +N + S + + SG YRC + +
Sbjct: 124 FALYK-EGDPAPYKNPERWYRASFPIITVTAAHSGTYRCYSFS 165
Score = 51.0 bits (122), Expect = 2e-07
Identities = 33/163 (20%), Positives = 55/163 (33%), Gaps = 17/163 (10%)
Query: 238 STTYSTGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEHDGFVLVLNGVRESDAG 296
S+ + C +G P + +S D V L + ++ S AG
Sbjct: 16 SSLVPLEKPVTLRC--QGPPGVDLYRLEKLSSSRYQDQAV--------LFIPAMKRSLAG 65
Query: 297 VYNCVAQNSEG-SAESVA-MIRING-HRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPR 353
Y C QN S S + G P L +P +G V + C+ +
Sbjct: 66 RYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQP-GPAVSSGGDVTLQCQTR-YGFDQ 123
Query: 354 ISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASN 396
+ K E + +N + S + + SG YRC + +
Sbjct: 124 FALYK-EGDPAPYKNPERWYRASFPIITVTAAHSGTYRCYSFS 165
Score = 46.7 bits (111), Expect = 7e-06
Identities = 20/124 (16%), Positives = 37/124 (29%), Gaps = 7/124 (5%)
Query: 5 RSSTELVISGVQREHGGRYSCVAGNPAGVYRG----DLHVTVNAPPIFIQRPVSTTYSTG 60
+ L I ++R GRY C N + +L T + S+G
Sbjct: 49 QDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSG 108
Query: 61 STSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQN 120
+ C + Q + +G+ + V + +G Y C + +
Sbjct: 109 GDVTLQCQTR-YGFDQFALYKEGDPAPY--KNPERWYRASFPIITVTAAHSGTYRCYSFS 165
Query: 121 SEGS 124
S
Sbjct: 166 SRDP 169
Score = 38.6 bits (90), Expect = 0.003
Identities = 26/162 (16%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 151 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTA 210
P V + C+ + K + + L + + +G YRC+
Sbjct: 20 PLEKPVTLRCQGP-PGVDLYRLEKL-------SSSRYQDQAVLFIPAMKRSLAGRYRCSY 71
Query: 211 SNLLGE----DVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHD 266
N D E T A P +P S+G + C + Q + +
Sbjct: 72 QNGSLWSLPSDQLELVATGVFAKPSLSAQP-GPAVSSGGDVTLQCQTR-YGFDQFALYKE 129
Query: 267 GNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 308
G+ + V + +G Y C + +S
Sbjct: 130 GDPAPY--KNPERWYRASFPIITVTAAHSGTYRCYSFSSRDP 169
Score = 28.6 bits (64), Expect = 7.3
Identities = 12/46 (26%), Positives = 15/46 (32%), Gaps = 7/46 (15%)
Query: 3 DRRSSTELVISGVQREHGGRYSCVAGNPAGVY----RGD---LHVT 41
+R I V H G Y C + + Y D L VT
Sbjct: 139 ERWYRASFPIITVTAAHSGTYRCYSFSSRDPYLWSAPSDPLELVVT 184
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 51.3 bits (122), Expect = 2e-07
Identities = 31/170 (18%), Positives = 57/170 (33%), Gaps = 10/170 (5%)
Query: 143 VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGP-Q 201
V P + P G SV + C + + E + + + ++Y + Q
Sbjct: 4 VSPSKVILPRGGSVLVTCSTSCDQPKLLGI-----ETPLPKKELLLPGNNRKVYELSNVQ 58
Query: 202 DSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEG-HPLPQ 260
+ C ++ G+ A+ +LTV P P+ + G + C VEG P Q
Sbjct: 59 EDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQ 118
Query: 261 MT--WFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGS 308
+T L + V E + R+ ++C +
Sbjct: 119 LTVVLLRGEKELKREPAVG-EPAEVTTTVLVRRDHHGAQFSCRTELDLRP 167
Score = 43.6 bits (102), Expect = 7e-05
Identities = 22/128 (17%), Positives = 40/128 (31%), Gaps = 7/128 (5%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQ-RPVSTTYST 59
+ +S V + + C + P G +TV P ++ P+ +
Sbjct: 43 LLPGNNRKVYELSNV--QEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPV 100
Query: 60 GSTSRITCLVEG-HPLPQMT--WFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNC 116
G + C VEG P Q+T L + V E + R+ ++C
Sbjct: 101 GKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVG-EPAEVTTTVLVRRDHHGAQFSC 159
Query: 117 VAQNSEGS 124
+
Sbjct: 160 RTELDLRP 167
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 49.8 bits (118), Expect = 3e-07
Identities = 22/141 (15%), Positives = 45/141 (31%), Gaps = 15/141 (10%)
Query: 104 NGVRESDAGVYN--CVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK 161
+G++E+ A + + G+ + + D AG +V + C+
Sbjct: 2 SGMKETAAAKFERQHMDSPDLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQ 61
Query: 162 PDGEPLPRISWSKDEAEFVEDRNHKI------------HRTGSLRLYNIGPQDSGLYRCT 209
+ WS + + + S+ + N+ D G Y C+
Sbjct: 62 VKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCS 121
Query: 210 ASNLLGEDVAEGYLTVTGAPP 230
+ A+ +TV G P
Sbjct: 122 IFT-MPVRTAKSLVTVLGIPQ 141
Score = 46.3 bits (109), Expect = 4e-06
Identities = 20/136 (14%), Positives = 43/136 (31%), Gaps = 15/136 (11%)
Query: 288 NGVRESDAGVYN--CVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCK 345
+G++E+ A + + G+ + + D AG +V + C+
Sbjct: 2 SGMKETAAAKFERQHMDSPDLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQ 61
Query: 346 PDGEPLPRISWSKDEAEFVEDRNHKI------------HRTGSLRLYNIGPQDSGLYRCT 393
+ WS + + + S+ + N+ D G Y C+
Sbjct: 62 VKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCS 121
Query: 394 ASNLLGEDVAEGYLTV 409
+ A+ +TV
Sbjct: 122 IFT-MPVRTAKSLVTV 136
Score = 44.0 bits (103), Expect = 3e-05
Identities = 19/125 (15%), Positives = 35/125 (28%), Gaps = 15/125 (12%)
Query: 8 TELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITC 67
E + +R+H + ++ P T G T + C
Sbjct: 5 KETAAAKFERQHMDSPDLGTDDDDKAMADINLSQDDSQPW----TSDETVVAGGTVVLKC 60
Query: 68 LVEGHPLPQMTWFH-DGNSLDSDDH----------VTYEHDGFVLVLNGVRESDAGVYNC 116
V+ H + W + +L + VT + ++ V +D G Y C
Sbjct: 61 QVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTC 120
Query: 117 VAQNS 121
Sbjct: 121 SIFTM 125
Score = 41.3 bits (96), Expect = 2e-04
Identities = 15/85 (17%), Positives = 25/85 (29%), Gaps = 11/85 (12%)
Query: 232 FIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDH----------VTYEH 280
T G T + C V+ H + W + +L + VT
Sbjct: 41 SQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTP 100
Query: 281 DGFVLVLNGVRESDAGVYNCVAQNS 305
+ ++ V +D G Y C
Sbjct: 101 HELSISISNVALADEGEYTCSIFTM 125
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 48.8 bits (116), Expect = 3e-07
Identities = 16/107 (14%), Positives = 34/107 (31%), Gaps = 18/107 (16%)
Query: 142 VVKPFDMRAPAGSSVEIPCK--PDGEPLPRISWSKDEAEFV--------------EDRNH 185
+ ++ A G S+ + C + +++W + + +DR
Sbjct: 7 IETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDR-V 65
Query: 186 KIHRTGSLRLYNIGPQDSGLYRCT-ASNLLGEDVAEGYLTVTGAPPI 231
L L ++ D+G Y C + G +L V +
Sbjct: 66 APGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVA 112
Score = 47.6 bits (113), Expect = 9e-07
Identities = 19/115 (16%), Positives = 38/115 (33%), Gaps = 21/115 (18%)
Query: 326 VVKPFDMRAPAGSSVEIPCK--PDGEPLPRISWSKDEAEFV--------------EDRNH 369
+ ++ A G S+ + C + +++W + + +DR
Sbjct: 7 IETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDR-V 65
Query: 370 KIHRTGSLRLYNIGPQDSGLYRCT-ASNLLGEDVAEGYLTVTGENSVEPAPHTSR 423
L L ++ D+G Y C + G +L V + E H +R
Sbjct: 66 APGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAE---HGAR 117
Score = 39.9 bits (93), Expect = 5e-04
Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 15/100 (15%)
Query: 49 IQRPVSTTYSTGSTSRITCLVEG--HPLPQMTWFHDGNSL-----DSDDHVTYEHDGFV- 100
I+ + + G + + C + + Q+ W L D H++ V
Sbjct: 7 IETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVA 66
Query: 101 ------LVLNGVRESDAGVYNC-VAQNSEGSAESVAMIRI 133
L L + +D G Y C +G+ + +
Sbjct: 67 PGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEV 106
Score = 39.9 bits (93), Expect = 5e-04
Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 15/100 (15%)
Query: 233 IQRPVSTTYSTGSTSRITCLVEG--HPLPQMTWFHDGNSL-----DSDDHVTYEHDGFV- 284
I+ + + G + + C + + Q+ W L D H++ V
Sbjct: 7 IETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVA 66
Query: 285 ------LVLNGVRESDAGVYNC-VAQNSEGSAESVAMIRI 317
L L + +D G Y C +G+ + +
Sbjct: 67 PGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEV 106
Score = 38.4 bits (89), Expect = 0.002
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 6 SSTELVISGVQREHGGRYSC-VAGNPAGVYRGDLHVTVNAPPI 47
L + + G Y C P G Y G + + V +
Sbjct: 69 PGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSV 111
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 52.5 bits (126), Expect = 4e-07
Identities = 62/360 (17%), Positives = 109/360 (30%), Gaps = 69/360 (19%)
Query: 5 RSSTE--LVISGVQREHGGRYSCVAGNPAG---VYRGDLHVTVN-----APPIFIQRPVS 54
+S T L ISG++ E Y C + N + V+ VTV P + + P S
Sbjct: 65 KSGTSASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSS 124
Query: 55 TTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDHVTY---EHDGF-----VLVLN 104
+ + + CL+ P + W DG+ + + T + + L L
Sbjct: 125 EE-LQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLT 183
Query: 105 GVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPF--DMRAPAGSSVEIPCKP 162
+ Y+C + + E V P ++ +G + + C
Sbjct: 184 PEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLV 243
Query: 163 DG---EPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRC------TASNL 213
+P+ +SW+ +H ++ Q SGLY +S+L
Sbjct: 244 KDYFPQPV-TVSWNSGA------LTSGVHTFPAVL------QSSGLYSLSSVVTVPSSSL 290
Query: 214 LGEDVA-----EGYLTVTGAPPIFIQRPVSTTY--------STGSTSRITCLVEG----H 256
+ + T + P + T +TC+V
Sbjct: 291 GTQTYICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHED 350
Query: 257 PLPQMTWFHDGNSLDSDDHVTYEHDG-------FVLVLNGVRESDAGVYNCVAQNSEGSA 309
P + W+ DG + + E VL + D Y C N A
Sbjct: 351 PQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPA 410
Score = 52.5 bits (126), Expect = 5e-07
Identities = 59/296 (19%), Positives = 103/296 (34%), Gaps = 41/296 (13%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV-----NAPPIFIQRPVSTTYSTG 60
SS L ++ Q + YSC + + T P +F P S + ++G
Sbjct: 177 SSY-LSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLAPSSKS-TSG 234
Query: 61 STSRITCLVEGH-PLP-QMTWFHDGNSLDSDDHVT---YEHDG-FVL--VLNGVRESDAG 112
T+ + CLV+ + P P ++W + +L S H + G + L V+ V S G
Sbjct: 235 GTAALGCLVKDYFPQPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVT-VPSSSLG 291
Query: 113 --VYNC-VAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDG----E 165
Y C V + + ++ KP D + E+ C +
Sbjct: 292 TQTYICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMI-SRTPEVTCVVVDVSHED 350
Query: 166 PLPRISWSKDEAEF--------VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGED 217
P + +W D + + N L + + D Y+C SN
Sbjct: 351 PQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPA 410
Query: 218 VAEGYLTVTG----APPIFIQRPVSTTYSTGSTSRITCLVEG-HPLP-QMTWFHDG 267
E ++ P ++ P + S +TCLV+G +P + W +G
Sbjct: 411 PIEKTISKAKGQPREPQVYTLPPSREEMTKNQVS-LTCLVKGFYPSDIAVEWESNG 465
Score = 41.4 bits (97), Expect = 0.001
Identities = 72/437 (16%), Positives = 131/437 (29%), Gaps = 74/437 (16%)
Query: 52 PVSTTYSTGSTSRITCL--------------VEGHPLPQMTWFHDGNSLDSDDHVTYEHD 97
P S + + G I+C + G + + +
Sbjct: 7 PPSASGTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKS 66
Query: 98 G--FVLVLNGVRESDAGVYNCVAQNSEGSAE---SVAMIRINGHRAPRLVVKPFDM--RA 150
G L ++G+ D Y C + NS ++ + + + G V F
Sbjct: 67 GTSASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEE 126
Query: 151 PAGSSVEIPCKPDG---EPLPRISWSKDEAEF---------VEDRNHKIHRTGSLRLYNI 198
+ + C + ++W D + + N+K + L L
Sbjct: 127 LQANKATLVCLISDFYPGAV-TVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPE 185
Query: 199 GPQDSGLYRCTASNLLGEDVAEGYLTVTGAPP----IFIQRPVSTTYSTGSTSRITCLVE 254
+ Y C ++ T A +F P S + ++G T+ + CLV+
Sbjct: 186 QWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLAPSSKS-TSGGTAALGCLVK 244
Query: 255 GH-PLP-QMTWFHDGNSLDSDDHVT---YEHDG-FVL--VLNGVRESDAG--VYNC-VAQ 303
+ P P ++W + +L S H + G + L V+ V S G Y C V
Sbjct: 245 DYFPQPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVT-VPSSSLGTQTYICNVNH 301
Query: 304 NSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDG----EPLPRISWSKD 359
+ + ++ KP D + E+ C +P + +W D
Sbjct: 302 KPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMI-SRTPEVTCVVVDVSHEDPQVKFNWYVD 360
Query: 360 EAEF--------VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTG 411
+ + N L + + D Y+C SN L
Sbjct: 361 GVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSN--------KALPAPI 412
Query: 412 ENSVEPAPHTSREPSAS 428
E ++ A REP
Sbjct: 413 EKTISKAKGQPREPQVY 429
Score = 35.2 bits (81), Expect = 0.11
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 8/86 (9%)
Query: 5 RSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVN-----APPIFIQRPVSTTYST 59
R + L + G Y C N A + ++ P ++ P +
Sbjct: 381 RVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREEMTK 440
Query: 60 GSTSRITCLVEG-HPLP-QMTWFHDG 83
S +TCLV+G +P + W +G
Sbjct: 441 NQVS-LTCLVKGFYPSDIAVEWESNG 465
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 47.1 bits (112), Expect = 2e-06
Identities = 24/115 (20%), Positives = 39/115 (33%), Gaps = 27/115 (23%)
Query: 142 VVKPFDMRAPAGSSVEIPCK-----PDGEPLPRISWSK---------------------D 175
V P + G SV +PC + + +++W++
Sbjct: 4 VQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESK 63
Query: 176 EAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNL-LGEDVAEGYLTVTGAP 229
EFV R R SLR++ + +D G Y C G + +L V P
Sbjct: 64 RLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118
Score = 44.4 bits (105), Expect = 1e-05
Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 27/114 (23%)
Query: 326 VVKPFDMRAPAGSSVEIPCK-----PDGEPLPRISWSK---------------------D 359
V P + G SV +PC + + +++W++
Sbjct: 4 VQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESK 63
Query: 360 EAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNL-LGEDVAEGYLTVTGE 412
EFV R R SLR++ + +D G Y C G + +L V +
Sbjct: 64 RLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAK 117
Score = 40.2 bits (94), Expect = 4e-04
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 10 LVISGVQREHGGRYSC-VAGNPAGVYRGDLHVTVNAPP 46
L + G++ E G Y+C P G D+ + V A P
Sbjct: 81 LRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118
Score = 32.5 bits (74), Expect = 0.16
Identities = 18/108 (16%), Positives = 31/108 (28%), Gaps = 26/108 (24%)
Query: 47 IFIQRPVSTTYSTGSTSRITCLVEGHPLP-----QMTWFHD-------------GNSLDS 88
+ +Q P G + + C ++ + Q+TW G S
Sbjct: 2 VVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE 61
Query: 89 DDHVTYEHDGFV-------LVLNGVRESDAGVYNC-VAQNSEGSAESV 128
+ + L + G+R D G Y C +GS
Sbjct: 62 SKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVD 109
Score = 32.5 bits (74), Expect = 0.16
Identities = 18/108 (16%), Positives = 31/108 (28%), Gaps = 26/108 (24%)
Query: 231 IFIQRPVSTTYSTGSTSRITCLVEGHPLP-----QMTWFHD-------------GNSLDS 272
+ +Q P G + + C ++ + Q+TW G S
Sbjct: 2 VVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE 61
Query: 273 DDHVTYEHDGFV-------LVLNGVRESDAGVYNC-VAQNSEGSAESV 312
+ + L + G+R D G Y C +GS
Sbjct: 62 SKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVD 109
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 46.8 bits (111), Expect = 2e-06
Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 17/95 (17%)
Query: 153 GSSVEIPC-KPDGEPLPRISWSKDE----AEFV-----------EDRNHKIHRTGSLRLY 196
GS+V + + E +++W E+ + R ++G+L +
Sbjct: 19 GSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYIS 78
Query: 197 NIGPQDSGLYRCTASNLLGEDVAEGY-LTVTGAPP 230
+ +D+ Y G + L V P
Sbjct: 79 KVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVP 113
Score = 46.1 bits (109), Expect = 4e-06
Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 17/90 (18%)
Query: 337 GSSVEIPC-KPDGEPLPRISWSKDE----AEFV-----------EDRNHKIHRTGSLRLY 380
GS+V + + E +++W E+ + R ++G+L +
Sbjct: 19 GSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYIS 78
Query: 381 NIGPQDSGLYRCTASNLLGEDVAEGY-LTV 409
+ +D+ Y G + L V
Sbjct: 79 KVQKEDNSTYIMRVLKKTGNEQEWKIKLQV 108
Score = 30.3 bits (68), Expect = 1.2
Identities = 10/72 (13%), Positives = 21/72 (29%), Gaps = 14/72 (19%)
Query: 70 EGHPLPQMTWFHDGNSLDSD--------------DHVTYEHDGFVLVLNGVRESDAGVYN 115
Q+TWF+ + + V + L ++ V++ D Y
Sbjct: 30 LPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYI 89
Query: 116 CVAQNSEGSAES 127
G+ +
Sbjct: 90 MRVLKKTGNEQE 101
Score = 30.3 bits (68), Expect = 1.2
Identities = 10/72 (13%), Positives = 21/72 (29%), Gaps = 14/72 (19%)
Query: 254 EGHPLPQMTWFHDGNSLDSD--------------DHVTYEHDGFVLVLNGVRESDAGVYN 299
Q+TWF+ + + V + L ++ V++ D Y
Sbjct: 30 LPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYI 89
Query: 300 CVAQNSEGSAES 311
G+ +
Sbjct: 90 MRVLKKTGNEQE 101
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral
virus, virus-immune SYST complex; 30.00A {Mus musculus}
SCOP: i.6.1.1
Length = 438
Score = 50.3 bits (121), Expect = 2e-06
Identities = 67/329 (20%), Positives = 106/329 (32%), Gaps = 77/329 (23%)
Query: 5 RSSTE--LVISGVQREHGGRYSCVAGNPAGVY--RGDLHVTVN----APPIFIQRPVSTT 56
S T+ L I V+ + Y C N + G + + AP + I P S
Sbjct: 70 GSRTDFTLTIDPVEADDVATYYCQQSNEVPLTFGAGTK-LDLKRADAAPTVSIFPPSSEQ 128
Query: 57 YSTGSTSRITCLVEG-HPLP-QMTWFHDGNSLDSDDHVTY----EHDGF-----VLVLNG 105
T + + C + +P + W DG+ + ++ D L L
Sbjct: 129 -LTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTK 187
Query: 106 VRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLV------VKPFDMRAPAGSSVEIP 159
Y C A + ++ V N LV VKP G S+++
Sbjct: 188 DEYERHNSYTCEATHKTSTSPIVKSFNRN-ECEVMLVESGGGLVKP-------GGSLKLS 239
Query: 160 CKPDG-------------------EPLPRISWSKDE---AEFVEDRNHKIHRTGS----- 192
C G E + IS + V+ R I R +
Sbjct: 240 CTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGR-FTISRDNAKNTLY 298
Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGY------LTV----TGAPPIFIQRPVSTTYS 242
L++ ++ D+ +Y C G D Y +TV T P ++ P S +
Sbjct: 299 LQMSSLRSADTAMYYC-VRREDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLAPGSAA-A 356
Query: 243 TGSTSRITCLVEG-HPLP-QMTWFHDGNS 269
S + CLV+G P P +TW S
Sbjct: 357 AASMVTLGCLVKGYFPEPVTVTWNSGSLS 385
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 46.3 bits (109), Expect = 2e-06
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Query: 59 TGSTSRITCLVEGHPLPQMTWFHDGNSLDSD-DHVTYEHDGFVLVLNGVRE-SDAGVYNC 116
+G+T +TC P ++ W H+ ++ D D D L L E +G Y C
Sbjct: 20 SGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVC 77
Query: 117 VAQNSEGSAESVAM 130
+ S+ + +
Sbjct: 78 YPRGSKPEDANFYL 91
Score = 46.3 bits (109), Expect = 2e-06
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Query: 243 TGSTSRITCLVEGHPLPQMTWFHDGNSLDSD-DHVTYEHDGFVLVLNGVRE-SDAGVYNC 300
+G+T +TC P ++ W H+ ++ D D D L L E +G Y C
Sbjct: 20 SGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVC 77
Query: 301 VAQNSEGSAESVAM 314
+ S+ + +
Sbjct: 78 YPRGSKPEDANFYL 91
Score = 41.3 bits (96), Expect = 1e-04
Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 6/82 (7%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EAEFVEDRNHKIHRTGSLRLY 196
+ P+ + +G++V + C P I W + ED + L L
Sbjct: 8 GGITQTPYKVSI-SGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLK 64
Query: 197 NIG-PQDSGLYRCTASNLLGED 217
+ SG Y C ED
Sbjct: 65 EFSELEQSGYYVCYPRGSKPED 86
Score = 41.3 bits (96), Expect = 1e-04
Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 6/82 (7%)
Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--EAEFVEDRNHKIHRTGSLRLY 380
+ P+ + +G++V + C P I W + ED + L L
Sbjct: 8 GGITQTPYKVSI-SGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLK 64
Query: 381 NIG-PQDSGLYRCTASNLLGED 401
+ SG Y C ED
Sbjct: 65 EFSELEQSGYYVCYPRGSKPED 86
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 49.8 bits (117), Expect = 4e-06
Identities = 13/107 (12%), Positives = 37/107 (34%), Gaps = 6/107 (5%)
Query: 72 HPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMI 131
L ++ W L ++ L++ + E D+GVY C+++ ++V
Sbjct: 559 SNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEE-RVKNKTVF-- 615
Query: 132 RINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAE 178
++ + V P + ++ + ++ + +
Sbjct: 616 QVVAKHVLEVKVVP---KPVVAPTLSVVQTEGSRIATKVLVASTKHH 659
Score = 49.8 bits (117), Expect = 4e-06
Identities = 13/107 (12%), Positives = 37/107 (34%), Gaps = 6/107 (5%)
Query: 256 HPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMI 315
L ++ W L ++ L++ + E D+GVY C+++ ++V
Sbjct: 559 SNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEE-RVKNKTVF-- 615
Query: 316 RINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAE 362
++ + V P + ++ + ++ + +
Sbjct: 616 QVVAKHVLEVKVVP---KPVVAPTLSVVQTEGSRIATKVLVASTKHH 659
Score = 48.6 bits (114), Expect = 9e-06
Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 3/118 (2%)
Query: 331 DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEF-VEDRNHKIHRTGSLRLYNIGPQDSGL 389
G + E+ C L R+ W E + + +L ++N+ DSG+
Sbjct: 542 QHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGV 600
Query: 390 YRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVKLASRE 447
Y+C + ++ + V+ P P+ S I V +AS +
Sbjct: 601 YQCLSEE-RVKNKTVFQVVAKHVLEVKVVPKPVVAPTLSVVQTEGSRIATKVLVASTK 657
Score = 45.5 bits (106), Expect = 8e-05
Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 7/117 (5%)
Query: 147 DMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEF-VEDRNHKIHRTGSLRLYNIGPQDSGL 205
G + E+ C L R+ W E + + +L ++N+ DSG+
Sbjct: 542 QHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGV 600
Query: 206 YRCTA-----SNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHP 257
Y+C + + + + VA+ L V P + +S + GS LV
Sbjct: 601 YQCLSEERVKNKTVFQVVAKHVLEVKVVPKPVVAPTLSVVQTEGSRIATKVLVASTK 657
Score = 30.5 bits (67), Expect = 3.0
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 10 LVISGVQREHGGRYSCVA 27
L+I + G Y C++
Sbjct: 588 LLIFNLSEGDSGVYQCLS 605
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.9 bits (118), Expect = 4e-06
Identities = 99/637 (15%), Positives = 204/637 (32%), Gaps = 166/637 (26%)
Query: 327 VKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNI--GP 384
V FD CK D + +P+ SK+E + + + T LRL+
Sbjct: 30 VDNFD------------CK-DVQDMPKSILSKEEIDHIIMSKDAVSGT--LRLFWTLLSK 74
Query: 385 QDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDTIHMAVKLA 444
Q+ + + + E + Y + E R+PS M ++
Sbjct: 75 QEEMVQK-----FVEEVLRINYKFLMSPIKTEQ-----RQPS------------MMTRMY 112
Query: 445 SREVDAAVNATINSLFG-YHSNEQQDHGSLMK-LLRFPDE----------SARTVVRAAD 492
+ D N N +F Y+ + Q + L + LL S +T V A D
Sbjct: 113 IEQRDRLYND--NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV-ALD 169
Query: 493 VYERTLSHIKKHIQAGVK-MNLSEDLSLGKAFFSPWRLVDEGGVDPLLRGFITSPAKRKR 551
V + ++ + + +NL S +L+ + +DP + K
Sbjct: 170 VC-LSYK-VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ--IDPNWTSRSDHSSNIKL 225
Query: 552 PTENLNKELTDKLFTTFHAVSL---D-------LAAMNIQ-R----GRDHGIPEY---NA 593
++ EL L + + L A N+ + R + ++
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285
Query: 594 WREYCGLPRANTF-EDLAREITDRRVRDKLQRLYGHPGFSYHDVL--SPRQIELIANLSG 650
+ T D + + + + + Q L P +VL +PR++ +IA
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL---P----REVLTTNPRRLSIIA---- 334
Query: 651 CMEHQRTANCSDLCFHTK-YRTIDGTCNNLQHPMWGASLTGFR-RLLKPIYENGFSTPVA 708
+ D ++ ++ C+ L + +SL + +++ S
Sbjct: 335 -------ESIRDGLATWDNWKHVN--CDKLTTII-ESSLNVLEPAEYRKMFDR-LS---- 379
Query: 709 PILSSPMAGNIDPFVGAILEDQVDGGRVGPTM-----RCLLIDQFK----RIRDGNIDPF 759
+ P + +I + +++ V V + L+ Q K I ++
Sbjct: 380 -VF--PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE-- 434
Query: 760 VGAILEDQVDGGRVGPTMRCLLIDQFKRIR------------DGNIDPFVG-----AILE 802
L+ +++ + ++D + + D +G
Sbjct: 435 ----LKVKLEN---EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487
Query: 803 DQVDGGRVGPTMRCLLID-QF--KRIRDGDRFWYENPSTFKPAQLTQIKQASLARVICDS 859
+++ R + +D +F ++IR W N S L Q+K ICD+
Sbjct: 488 ERMTL------FRMVFLDFRFLEQKIRHDSTAW--NASGSILNTLQQLKFYK--PYICDN 537
Query: 860 GDRLTEVRVC----FSPRPTTSI--TPDPVITHMVMQ 890
D E V F P+ ++ + + + +
Sbjct: 538 -DPKYERLVNAILDFLPKIEENLICSKYTDLLRIALM 573
Score = 42.9 bits (100), Expect = 5e-04
Identities = 48/287 (16%), Positives = 83/287 (28%), Gaps = 92/287 (32%)
Query: 326 VVKPFDMRA--------PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSL 377
V++P + R P S IP L + W V +K+H+ +
Sbjct: 365 VLEPAEYRKMFDRLSVFP--PSAHIP-----TILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 378 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTS----------REPSA 427
+ + ++ YL + + E A H S +
Sbjct: 418 E------KQPKESTISIPSI--------YLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463
Query: 428 SKPSVADDTIHMAVKLASREVDAAVNATINSLFGYH--SNEQQDHGSLMKL----LRFPD 481
P D + S G+H + E + +L ++ RF
Sbjct: 464 LIPPYLDQYFY-------------------SHIGHHLKNIEHPERMTLFRMVFLDFRF-- 502
Query: 482 ESARTVVRAADVYERTLSHIKKHIQA-GVKMNLSEDLSLGKAFFSPWRLVDEGGVDPLLR 540
E+ + H A G +N + L K + E V+ +L
Sbjct: 503 ------------LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
Query: 541 GFITSPAKRKRPTENL-NKELTD----KLFTTFHAVSLDLAAMNIQR 582
F+ + ENL + TD L A+ + A +QR
Sbjct: 551 -FL------PKIEENLICSKYTDLLRIALMAEDEAIFEE-AHKQVQR 589
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 45.7 bits (108), Expect = 5e-06
Identities = 19/122 (15%), Positives = 35/122 (28%), Gaps = 33/122 (27%)
Query: 141 LVVKPFDMRAPAGSSVEIPCK-----PDGEPLPRISWSK--------------------- 174
+V ++ GS V + C + + +W
Sbjct: 2 VVYTDREVYGAVGSQVTLHCSFWSSEWVSDDI-SFTWRYQPEGGRDAISIFHYAKGQPYI 60
Query: 175 DEAEFVEDR----NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY--LTVTGA 228
DE ++R + GS+ ++N+ D+G + C N L V
Sbjct: 61 DEVGTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEK 120
Query: 229 PP 230
P
Sbjct: 121 VP 122
Score = 42.6 bits (100), Expect = 6e-05
Identities = 17/116 (14%), Positives = 35/116 (30%), Gaps = 31/116 (26%)
Query: 325 LVVKPFDMRAPAGSSVEIPCK-----PDGEPLPRISWSK--------------------- 358
+V ++ GS V + C + + +W
Sbjct: 2 VVYTDREVYGAVGSQVTLHCSFWSSEWVSDDI-SFTWRYQPEGGRDAISIFHYAKGQPYI 60
Query: 359 DEAEFVEDR----NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
DE ++R + GS+ ++N+ D+G + C N +T+
Sbjct: 61 DEVGTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLY 116
Score = 28.8 bits (64), Expect = 4.0
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVY--RGDLHVTVNAPP 46
+VI + G ++C NP + + + V
Sbjct: 83 IVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKV 121
Score = 28.0 bits (62), Expect = 6.4
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIR 132
+V++ + SD G + C +N + +
Sbjct: 83 IVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVT 114
Score = 28.0 bits (62), Expect = 6.4
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIR 316
+V++ + SD G + C +N + +
Sbjct: 83 IVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVT 114
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 46.2 bits (108), Expect = 4e-05
Identities = 12/77 (15%), Positives = 17/77 (22%), Gaps = 1/77 (1%)
Query: 134 NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSL 193
+ S + C + SW E L
Sbjct: 496 ECPNPKPDKAPLQKVSLAPNSRYYLSCPMES-RHATYSWRHKENVEQSCEPGHQSPNCIL 554
Query: 194 RLYNIGPQDSGLYRCTA 210
+ N+ Q G Y C A
Sbjct: 555 FIENLTAQQYGHYFCEA 571
Score = 46.2 bits (108), Expect = 4e-05
Identities = 12/77 (15%), Positives = 17/77 (22%), Gaps = 1/77 (1%)
Query: 318 NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSL 377
+ S + C + SW E L
Sbjct: 496 ECPNPKPDKAPLQKVSLAPNSRYYLSCPMES-RHATYSWRHKENVEQSCEPGHQSPNCIL 554
Query: 378 RLYNIGPQDSGLYRCTA 394
+ N+ Q G Y C A
Sbjct: 555 FIENLTAQQYGHYFCEA 571
Score = 43.5 bits (101), Expect = 3e-04
Identities = 18/104 (17%), Positives = 31/104 (29%), Gaps = 2/104 (1%)
Query: 16 QREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLP 75
Q YS + + H P + + S ++C +E
Sbjct: 471 QGRCISIYSSERSVLQSINPAEPHKECPNPKPDKAPLQKVSLAPNSRYYLSCPMES-RHA 529
Query: 76 QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQ 119
+W H N S + + +L + + G Y C AQ
Sbjct: 530 TYSWRHKENVEQSCEPGHQSPNC-ILFIENLTAQQYGHYFCEAQ 572
Score = 42.7 bits (99), Expect = 5e-04
Identities = 34/255 (13%), Positives = 68/255 (26%), Gaps = 22/255 (8%)
Query: 67 CLVEGHPLPQMTW-FHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSA 125
CL + P+P T+ D + + L + V+ A + E
Sbjct: 322 CLPDQQPIPTETFQVADRHPEVAQRVEPMGPLKTPLFHSKYHYQKVAVHRMQASHGET-- 379
Query: 126 ESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKD--------EA 177
V + + ++V + A + +EI + +S + +
Sbjct: 380 FHVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQW 439
Query: 178 EFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYL---------TVTGA 228
E + G + +D + L
Sbjct: 440 EVSQVPLDLCEVYGGGCHGCLMSRDPYCGWDQGRCISIYSSERSVLQSINPAEPHKECPN 499
Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLN 288
P + + S ++C +E +W H N S + + +L +
Sbjct: 500 PKPDKAPLQKVSLAPNSRYYLSCPMES-RHATYSWRHKENVEQSCEPGHQSPNC-ILFIE 557
Query: 289 GVRESDAGVYNCVAQ 303
+ G Y C AQ
Sbjct: 558 NLTAQQYGHYFCEAQ 572
Score = 31.1 bits (69), Expect = 1.8
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 10 LVISGVQREHGGRYSCVA 27
L I + + G Y C A
Sbjct: 554 LFIENLTAQQYGHYFCEA 571
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 45.5 bits (106), Expect = 4e-05
Identities = 22/173 (12%), Positives = 44/173 (25%), Gaps = 13/173 (7%)
Query: 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLN 104
+++ + G +TC + +TW D +S G L +
Sbjct: 6 KDVYVVELDWYPDAPGEMVVLTC--DTPEEDGITWTLDQSSE-------VLGSGKTLTIQ 56
Query: 105 GVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDG 164
DAG Y C G S +++ ++ + + + C+
Sbjct: 57 VKEFGDAGQYTCHK---GGEVLSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKN 113
Query: 165 EPLP-RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE 216
W + + + + G R N E
Sbjct: 114 YSGRFTCWWLTTISTDLTFSVKSSRGSSDPQGVTCGAATLSAERVRGDNKEYE 166
Score = 45.5 bits (106), Expect = 4e-05
Identities = 22/173 (12%), Positives = 44/173 (25%), Gaps = 13/173 (7%)
Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLN 288
+++ + G +TC + +TW D +S G L +
Sbjct: 6 KDVYVVELDWYPDAPGEMVVLTC--DTPEEDGITWTLDQSSE-------VLGSGKTLTIQ 56
Query: 289 GVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDG 348
DAG Y C G S +++ ++ + + + C+
Sbjct: 57 VKEFGDAGQYTCHK---GGEVLSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKN 113
Query: 349 EPLP-RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGE 400
W + + + + G R N E
Sbjct: 114 YSGRFTCWWLTTISTDLTFSVKSSRGSSDPQGVTCGAATLSAERVRGDNKEYE 166
Score = 32.8 bits (73), Expect = 0.51
Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 1/91 (1%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYSTGSTSRI 65
S L I + G+Y+C G + L + I+ + + + +
Sbjct: 49 SGKTLTIQVKEFGDAGQYTCHKGGEVLSH-SLLLLHKKEDGIWSTDILKDQKEPKNKTFL 107
Query: 66 TCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH 96
C + + W+ S D V
Sbjct: 108 RCEAKNYSGRFTCWWLTTISTDLTFSVKSSR 138
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 42.5 bits (100), Expect = 5e-05
Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 17/83 (20%)
Query: 147 DMRAPAGSSVEIPC-KPDGEPLPRISWSKDE----AEFV------------EDRNHKIHR 189
D+ A GS+V + K P RI+W + E+ + R +
Sbjct: 12 DINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEEN 71
Query: 190 TGSLRLYNIGPQDSGLYRCTASN 212
G+L + N+ +D G Y
Sbjct: 72 NGALHISNVRKEDKGTYYMRVLR 94
Score = 42.5 bits (100), Expect = 5e-05
Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 17/83 (20%)
Query: 331 DMRAPAGSSVEIPC-KPDGEPLPRISWSKDE----AEFV------------EDRNHKIHR 373
D+ A GS+V + K P RI+W + E+ + R +
Sbjct: 12 DINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEEN 71
Query: 374 TGSLRLYNIGPQDSGLYRCTASN 396
G+L + N+ +D G Y
Sbjct: 72 NGALHISNVRKEDKGTYYMRVLR 94
Score = 29.0 bits (65), Expect = 2.7
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 15/68 (22%)
Query: 76 QMTWFHDGNSL----DSDDHVTYEHDGF-----------VLVLNGVRESDAGVYNCVAQN 120
++TW H N + + T F L ++ VR+ D G Y
Sbjct: 35 RITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGALHISNVRKEDKGTYYMRVLR 94
Query: 121 SEGSAESV 128
+ +
Sbjct: 95 ETENELKI 102
Score = 29.0 bits (65), Expect = 2.7
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 15/68 (22%)
Query: 260 QMTWFHDGNSL----DSDDHVTYEHDGF-----------VLVLNGVRESDAGVYNCVAQN 304
++TW H N + + T F L ++ VR+ D G Y
Sbjct: 35 RITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGALHISNVRKEDKGTYYMRVLR 94
Query: 305 SEGSAESV 312
+ +
Sbjct: 95 ETENELKI 102
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 42.9 bits (101), Expect = 5e-05
Identities = 21/110 (19%), Positives = 33/110 (30%), Gaps = 33/110 (30%)
Query: 148 MRAPAGSSVEIPCK-----PDGEPLPRISWSKDEAEFVEDRNHKIHRTG----------- 191
+ G + +PCK D PL I W A+ + I +G
Sbjct: 15 IEKAKGETAYLPCKFTLSPEDQGPL-DIEWLISPADNQKVDQVIILYSGDKIYDDYYPDL 73
Query: 192 ----------------SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 225
S+ + N+ D G Y+C G + +L V
Sbjct: 74 KGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 123
Score = 42.9 bits (101), Expect = 5e-05
Identities = 21/110 (19%), Positives = 33/110 (30%), Gaps = 33/110 (30%)
Query: 332 MRAPAGSSVEIPCK-----PDGEPLPRISWSKDEAEFVEDRNHKIHRTG----------- 375
+ G + +PCK D PL I W A+ + I +G
Sbjct: 15 IEKAKGETAYLPCKFTLSPEDQGPL-DIEWLISPADNQKVDQVIILYSGDKIYDDYYPDL 73
Query: 376 ----------------SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
S+ + N+ D G Y+C G + +L V
Sbjct: 74 KGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 123
Score = 31.0 bits (70), Expect = 0.58
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAES 127
+ + ++ SD G Y C + + G A
Sbjct: 91 INVTNLQLSDIGTYQCKVKKAPGVANK 117
Score = 31.0 bits (70), Expect = 0.58
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAES 311
+ + ++ SD G Y C + + G A
Sbjct: 91 INVTNLQLSDIGTYQCKVKKAPGVANK 117
Score = 28.7 bits (64), Expect = 4.4
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTV 42
+ ++ +Q G Y C GV +H+ V
Sbjct: 91 INVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 123
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 42.1 bits (99), Expect = 6e-05
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 22/82 (26%)
Query: 149 RAPAGSSVEIPCK---PDGEPLP--RISWSKDEAEFV------EDRNHKIH-----RTG- 191
+A + ++PC+ + L + W E + +++ +H RT
Sbjct: 5 QAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSF 64
Query: 192 -----SLRLYNIGPQDSGLYRC 208
+LRL+N+ +D GLY+C
Sbjct: 65 DSDSWTLRLHNLQIKDKGLYQC 86
Score = 42.1 bits (99), Expect = 6e-05
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 22/82 (26%)
Query: 333 RAPAGSSVEIPCK---PDGEPLP--RISWSKDEAEFV------EDRNHKIH-----RTG- 375
+A + ++PC+ + L + W E + +++ +H RT
Sbjct: 5 QAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSF 64
Query: 376 -----SLRLYNIGPQDSGLYRC 392
+LRL+N+ +D GLY+C
Sbjct: 65 DSDSWTLRLHNLQIKDKGLYQC 86
Score = 31.7 bits (72), Expect = 0.32
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
Query: 76 QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESV 128
+ + S DSD + L L+ ++ D G+Y C+ + + +
Sbjct: 54 VHSKYMGRTSFDSDS--------WTLRLHNLQIKDKGLYQCIIHHKKPTGMIR 98
Score = 31.7 bits (72), Expect = 0.32
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
Query: 260 QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNSEGSAESV 312
+ + S DSD + L L+ ++ D G+Y C+ + + +
Sbjct: 54 VHSKYMGRTSFDSDS--------WTLRLHNLQIKDKGLYQCIIHHKKPTGMIR 98
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 45.6 bits (107), Expect = 6e-05
Identities = 38/311 (12%), Positives = 79/311 (25%), Gaps = 40/311 (12%)
Query: 63 SRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGV----YNCVA 118
S + ++ M + + H + + V Y
Sbjct: 117 SNVIWEIKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECAIHFVEIRCYIDNL 176
Query: 119 QNSEGSAES--VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDE 176
S S + +I+ + V P D GS + C + L + +
Sbjct: 177 HFSGLEEWSDWSPVKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTNC 236
Query: 177 AEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRP 236
D ++++ NI S +++ + P P
Sbjct: 237 PLIHLDG-----ENVAIKIRNISV--SASSGTNVVFTTEDNIFGTVIFAGYPP----DTP 285
Query: 237 VSTTYSTGSTSRITCLVEGHPLPQMTWFHDGN----SLDSDDHVTYEH------DGFVLV 286
T I C + + + S +V + + + L+
Sbjct: 286 QQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEAPTNESYQLL 345
Query: 287 LNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKP 346
+ + + A N G ++S ++ I V P P V+
Sbjct: 346 FQMLPNQEIYNFTLNAHNPLGRSQSTILVNITEK------VYP---HTPTSFKVK----D 392
Query: 347 DGEPLPRISWS 357
++SW
Sbjct: 393 INSTAVKLSWH 403
Score = 44.8 bits (105), Expect = 1e-04
Identities = 29/263 (11%), Positives = 66/263 (25%), Gaps = 37/263 (14%)
Query: 40 VTVNAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGF 99
++ P GS C+ + L + + + D
Sbjct: 193 ISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTNCPLIHLDGENVA----- 247
Query: 100 VLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIP 159
+ + + S + N V + +V A P + EI
Sbjct: 248 -IKIRNISVSASSGTNVVFTTEDNIFGTV-------IFAGYPPDTPQQLNCETHDLKEII 299
Query: 160 C-----KPDGEPLPRIS------WSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRC 208
C + PR + + ++ + + L + Q+ +
Sbjct: 300 CSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEAPTNESYQLLFQMLPNQEIYNFTL 359
Query: 209 TASNLLGEDVAEGYLTVT-----GAPPIFIQRPVSTTY--------STGSTSRITCLVEG 255
A N LG + + +T P F + +++T + C +E
Sbjct: 360 NAHNPLGRSQSTILVNITEKVYPHTPTSFKVKDINSTAVKLSWHLPGNFAKINFLCEIEI 419
Query: 256 HPLPQMTWFHDGNSLDSDDHVTY 278
+ + ++
Sbjct: 420 KKSNSVQEQRNVTIQGVENSSYL 442
Score = 36.0 bits (82), Expect = 0.065
Identities = 36/255 (14%), Positives = 69/255 (27%), Gaps = 34/255 (13%)
Query: 180 VEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRP--- 236
+E R+ ++ I G Y T ++L + T+ I
Sbjct: 32 IEQRSRSCYQLEKTS-IKIPALSHGDYEITINSLHDFGSSTSKFTLNEQNVSLIPDTPEI 90
Query: 237 --VSTTYSTGS--------------TSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEH 280
+S +ST + S + ++ M + + H
Sbjct: 91 LQLSADFSTSTLYLKWNDRGSVFPHRSNVIWEIKVLRKESMELVKLVTHQTTLNGKDTLH 150
Query: 281 DGFVLVLNGVRESDAGV----YNCVAQNSEGSAES--VAMIRINGHRAPRLVVKPFDMRA 334
+ + V Y S S + +I+ + V P D
Sbjct: 151 HWSWASDMPLECAIHFVEIRCYIDNLHFSGLEEWSDWSPVKQISWIPDSQTKVFPQDKVI 210
Query: 335 PAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSG---LYR 391
GS + C + L + + D ++++ NI S +
Sbjct: 211 LVGSDITFCCVSQEKVLSALIGHTNCPLIHLDG-----ENVAIKIRNISVSASSGTNVVF 265
Query: 392 CTASNLLGEDVAEGY 406
T N+ G + GY
Sbjct: 266 TTEDNIFGTVIFAGY 280
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 44.6 bits (104), Expect = 1e-04
Identities = 15/98 (15%), Positives = 27/98 (27%), Gaps = 5/98 (5%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP--IFIQRPVSTTYS 58
+ + VQ G Y P + L + V PP + ++
Sbjct: 247 WGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAP 306
Query: 59 TGSTSRITCLVEG-HPLP--QMTWFHDGNSLDSDDHVT 93
+ + CLV +P ++ W G
Sbjct: 307 GEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAE 344
Score = 38.4 bits (88), Expect = 0.008
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 4/91 (4%)
Query: 191 GSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFI-QRPVSTTYSTGSTSRI 249
G+ L + P G Y T + L V P + + ++ + +
Sbjct: 254 GTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPEL 313
Query: 250 TCLVEG-HPLP--QMTWFHDGNSLDSDDHVT 277
CLV +P ++ W G
Sbjct: 314 LCLVSHFYPSGGLEVEWELRGGPGGRSQKAE 344
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell
receptor delta, immune system; HET: NAG MAN FUC; 3.40A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 207
Score = 43.0 bits (101), Expect = 2e-04
Identities = 27/138 (19%), Positives = 47/138 (34%), Gaps = 16/138 (11%)
Query: 3 DRRSSTELVISGVQREHGGRYSCVAGNPAG-----------VYRGDLHVTVNAPPIFIQR 51
+RR ST L I Q E G Y C A V+ VTV +
Sbjct: 67 ERRYST-LHIRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAK 125
Query: 52 PVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRES 109
P + + + + + CLV+ P ++ ++ D + G + +
Sbjct: 126 P--SVFIMKNGTNVACLVKDFYPKEVTISLRSSKKIVEFDPAIVISPSGKYSAVKLGQYG 183
Query: 110 DAGVYNCVAQNSEGSAES 127
D+ C Q++ + S
Sbjct: 184 DSNSVTCSVQHNSETVHS 201
Score = 39.6 bits (92), Expect = 0.002
Identities = 28/200 (14%), Positives = 57/200 (28%), Gaps = 34/200 (17%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPC--------------KPDGEPLPRI---SWSKDEAEFVE 181
L + G+ + C G + S +K+
Sbjct: 9 SALSLHE-------GTDSALRCNFTTTMRSVQWFRQNSRGSLISLFYLASGTKENGRLKS 61
Query: 182 DRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYL--------TVTGAPPIFI 233
+ K R +L + + +DSG Y C A + E T P
Sbjct: 62 AFDSKERRYSTLHIRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQ 121
Query: 234 QRPVSTTYSTGSTSRITCLVEGH-PLP-QMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVR 291
+ + + + + CLV+ P ++ ++ D + G + +
Sbjct: 122 PPAKPSVFIMKNGTNVACLVKDFYPKEVTISLRSSKKIVEFDPAIVISPSGKYSAVKLGQ 181
Query: 292 ESDAGVYNCVAQNSEGSAES 311
D+ C Q++ + S
Sbjct: 182 YGDSNSVTCSVQHNSETVHS 201
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 41.1 bits (96), Expect = 2e-04
Identities = 22/111 (19%), Positives = 37/111 (33%), Gaps = 25/111 (22%)
Query: 326 VVKPFDMRAPAGSSVEIPCK----PDGEPLPRISWSKDEA-----------------EFV 364
V +P ++R GSS +PC + ++W +DE +
Sbjct: 11 VSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPL 70
Query: 365 EDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG---YLTVTGE 412
L + ++ D+ +Y C +LG V G L V E
Sbjct: 71 ASSRFLHDHQAELHIRDVRGHDASIYVC-RVEVLGLGVGTGNGTRLVVEKE 120
Score = 39.2 bits (91), Expect = 8e-04
Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 25/110 (22%)
Query: 142 VVKPFDMRAPAGSSVEIPCK----PDGEPLPRISWSKDEA-----------------EFV 180
V +P ++R GSS +PC + ++W +DE +
Sbjct: 11 VSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPL 70
Query: 181 EDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG---YLTVTG 227
L + ++ D+ +Y C +LG V G L V
Sbjct: 71 ASSRFLHDHQAELHIRDVRGHDASIYVC-RVEVLGLGVGTGNGTRLVVEK 119
Score = 28.4 bits (63), Expect = 4.7
Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 24/104 (23%)
Query: 223 LTVTGAPPIFIQRPVSTTYSTGSTSRITCLV----EGHPLPQMTWFHDG----------- 267
L GA +++ +P GS++ + C + +TWF D
Sbjct: 3 LYFQGA--LWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGT 60
Query: 268 ------NSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNS 305
+ + ++H L + VR DA +Y C +
Sbjct: 61 PEFRGRLAPLASSRFLHDHQAE-LHIRDVRGHDASIYVCRVEVL 103
Score = 28.0 bits (62), Expect = 6.3
Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 22/96 (22%)
Query: 47 IFIQRPVSTTYSTGSTSRITCLV----EGHPLPQMTWFHDG-----------------NS 85
+++ +P GS++ + C + +TWF D +
Sbjct: 9 LWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLA 68
Query: 86 LDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVAQNS 121
+ ++H L + VR DA +Y C +
Sbjct: 69 PLASSRFLHDHQAE-LHIRDVRGHDASIYVCRVEVL 103
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 41.5 bits (97), Expect = 2e-04
Identities = 22/121 (18%), Positives = 38/121 (31%), Gaps = 29/121 (23%)
Query: 149 RAPAGSSVEIPC----KPDGEPLPRISWSKDEAEFV------------------EDRNHK 186
RA G E+PC + + + W + V R
Sbjct: 17 RALVGDEAELPCRISPGKNATGM-EVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTEL 75
Query: 187 IHRTG-----SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTY 241
+ + +LR+ N+ D G Y C + ++ A L V P +I S ++
Sbjct: 76 LKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE-DPFYWINPGRSRSH 134
Query: 242 S 242
Sbjct: 135 H 135
Score = 39.9 bits (93), Expect = 8e-04
Identities = 22/123 (17%), Positives = 36/123 (29%), Gaps = 29/123 (23%)
Query: 333 RAPAGSSVEIPC----KPDGEPLPRISWSKDEAEFV------------------EDRNHK 370
RA G E+PC + + + W + V R
Sbjct: 17 RALVGDEAELPCRISPGKNATGM-EVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTEL 75
Query: 371 IHRTG-----SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREP 425
+ + +LR+ N+ D G Y C + ++ A L V + P SR
Sbjct: 76 LKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE-DPFYWINPGRSRSH 134
Query: 426 SAS 428
Sbjct: 135 HHH 137
Score = 31.4 bits (71), Expect = 0.55
Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 8/82 (9%)
Query: 70 EGHPLPQMTWFHDGNSLDSDDHVTYEHDG-FVLVLNGVRESDAGVYNCVAQNSEGSAESV 128
+ Q + L + +G L + VR SD G Y C ++ E+
Sbjct: 59 KDQDAEQAPEYRGRTELLKESI----GEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAA 114
Query: 129 AMIRINGHRAPRLVVKPFDMRA 150
+++ P + P R+
Sbjct: 115 VELKVE---DPFYWINPGRSRS 133
Score = 31.4 bits (71), Expect = 0.55
Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 8/82 (9%)
Query: 254 EGHPLPQMTWFHDGNSLDSDDHVTYEHDG-FVLVLNGVRESDAGVYNCVAQNSEGSAESV 312
+ Q + L + +G L + VR SD G Y C ++ E+
Sbjct: 59 KDQDAEQAPEYRGRTELLKESI----GEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAA 114
Query: 313 AMIRINGHRAPRLVVKPFDMRA 334
+++ P + P R+
Sbjct: 115 VELKVE---DPFYWINPGRSRS 133
Score = 31.4 bits (71), Expect = 0.60
Identities = 10/49 (20%), Positives = 19/49 (38%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFIQRPVSTTYS 58
L I V+ G Y+C + + + + V P +I S ++
Sbjct: 87 LRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYWINPGRSRSHH 135
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 42.5 bits (100), Expect = 2e-04
Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 6/95 (6%)
Query: 5 RSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPP----IFIQRPVSTTYSTG 60
S+ L HG ++C A P ++ + + + P S +
Sbjct: 63 SVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALN 122
Query: 61 STSRITCLVEGHPLP--QMTWFHDGNSLDSDDHVT 93
+TCL G + W L + ++T
Sbjct: 123 ELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLT 157
Score = 38.3 bits (89), Expect = 0.005
Identities = 19/139 (13%), Positives = 35/139 (25%), Gaps = 14/139 (10%)
Query: 153 GSSVEIPCKPDGEPLP---RISWSKDEAEFV------EDRNHKIHRTGSLRLYNIGPQDS 203
GS + C G +W+ + D + L
Sbjct: 19 GSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHG 78
Query: 204 GLYRCTASNL-LGEDVAEGYLTVTGAPP--IFIQRPVSTTYSTGSTSRITCLVEGHPLP- 259
+ CTA+ + + + P S + +TCL G
Sbjct: 79 KTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKD 138
Query: 260 -QMTWFHDGNSLDSDDHVT 277
+ W L + ++T
Sbjct: 139 VLVRWLQGSQELPREKYLT 157
Score = 34.5 bits (79), Expect = 0.11
Identities = 18/103 (17%), Positives = 29/103 (28%), Gaps = 8/103 (7%)
Query: 45 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLP---QMTWFHDGNSLDSDDHVTYEHDG--- 98
P + + RP GS + +TC + G TW + G
Sbjct: 4 PRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYS 63
Query: 99 --FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAP 139
VL + + C A E A + +G+
Sbjct: 64 VSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFR 106
Score = 34.5 bits (79), Expect = 0.11
Identities = 18/103 (17%), Positives = 29/103 (28%), Gaps = 8/103 (7%)
Query: 229 PPIFIQRPVSTTYSTGSTSRITCLVEGHPLP---QMTWFHDGNSLDSDDHVTYEHDG--- 282
P + + RP GS + +TC + G TW + G
Sbjct: 4 PRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYS 63
Query: 283 --FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAP 323
VL + + C A E A + +G+
Sbjct: 64 VSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFR 106
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 40.7 bits (95), Expect = 2e-04
Identities = 13/91 (14%), Positives = 21/91 (23%), Gaps = 24/91 (26%)
Query: 142 VVKPFDMRAPAGSSVEIPCK---PDGEPLPRISWSK----DEAEFVEDRNHKIHRTG--- 191
+ P + V+I C G + W D + H
Sbjct: 5 LKTPESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKY 64
Query: 192 --------------SLRLYNIGPQDSGLYRC 208
SL++ + D Y C
Sbjct: 65 RGRLKVSHKVPGDVSLQINTLQMDDRNHYTC 95
Score = 40.7 bits (95), Expect = 2e-04
Identities = 13/91 (14%), Positives = 21/91 (23%), Gaps = 24/91 (26%)
Query: 326 VVKPFDMRAPAGSSVEIPCK---PDGEPLPRISWSK----DEAEFVEDRNHKIHRTG--- 375
+ P + V+I C G + W D + H
Sbjct: 5 LKTPESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKY 64
Query: 376 --------------SLRLYNIGPQDSGLYRC 392
SL++ + D Y C
Sbjct: 65 RGRLKVSHKVPGDVSLQINTLQMDDRNHYTC 95
Score = 29.5 bits (66), Expect = 2.1
Identities = 15/103 (14%), Positives = 28/103 (27%), Gaps = 31/103 (30%)
Query: 221 GYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVE---GHPLPQMTWFHDGNSL------- 270
G+ T+ + +I C+ + G+ + W S
Sbjct: 1 GHPTLKTPESVTGTW--------KGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLR 52
Query: 271 -DSDDHVTYE-----------HDG-FVLVLNGVRESDAGVYNC 300
+ DH+ G L +N ++ D Y C
Sbjct: 53 DSTGDHIQQAKYRGRLKVSHKVPGDVSLQINTLQMDDRNHYTC 95
Score = 28.8 bits (64), Expect = 3.3
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 101 LVLNGVRESDAGVYNC 116
L +N ++ D Y C
Sbjct: 80 LQINTLQMDDRNHYTC 95
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 42.1 bits (99), Expect = 4e-04
Identities = 38/220 (17%), Positives = 64/220 (29%), Gaps = 61/220 (27%)
Query: 50 QRPVSTTYSTGSTSRITCLVEGHPLPQMTWF--HDGNSL------DSDDHVTYEHDGFV- 100
R S TGS++ ITC + + W+ +G + DS G
Sbjct: 7 GRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISP 66
Query: 101 --------------LVLNGVRESDAGVYNCVAQNSEG------------------SAESV 128
++L + E+D+GVY C + SA+
Sbjct: 67 GKYDTYGSTRKNLRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDA 126
Query: 129 AMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC----------------KPDGEPLPRISW 172
A ++ + P +V + C P E + I
Sbjct: 127 KKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKRLPSKEMIFLIRQ 186
Query: 173 SKDEAEFVEDR----NHKIHRTGSLRLYNIGPQDSGLYRC 208
DE R K ++ +L + + +DS Y C
Sbjct: 187 GSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFC 226
Score = 42.1 bits (99), Expect = 4e-04
Identities = 38/220 (17%), Positives = 64/220 (29%), Gaps = 61/220 (27%)
Query: 234 QRPVSTTYSTGSTSRITCLVEGHPLPQMTWF--HDGNSL------DSDDHVTYEHDGFV- 284
R S TGS++ ITC + + W+ +G + DS G
Sbjct: 7 GRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISP 66
Query: 285 --------------LVLNGVRESDAGVYNCVAQNSEG------------------SAESV 312
++L + E+D+GVY C + SA+
Sbjct: 67 GKYDTYGSTRKNLRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDA 126
Query: 313 AMIRINGHRAPRLVVKPFDMRAPAGSSVEIPC----------------KPDGEPLPRISW 356
A ++ + P +V + C P E + I
Sbjct: 127 KKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKRLPSKEMIFLIRQ 186
Query: 357 SKDEAEFVEDR----NHKIHRTGSLRLYNIGPQDSGLYRC 392
DE R K ++ +L + + +DS Y C
Sbjct: 187 GSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFC 226
Score = 35.6 bits (82), Expect = 0.049
Identities = 31/233 (13%), Positives = 53/233 (22%), Gaps = 69/233 (29%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW---------------------SKDEA 177
++ + GSS EI C I W E+
Sbjct: 10 KSVIRQT-------GSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLES 62
Query: 178 EFVEDRNH---KIHRTGSLRLYNIGPQDSGLYRCTAS-------------------NLLG 215
+ + + L N+ DSG+Y C
Sbjct: 63 GISPGKYDTYGSTRKNLRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGS 122
Query: 216 EDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGH-PLPQMTWF---------- 264
D A+ Q S + + CL E + W+
Sbjct: 123 ADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKRLPSKEMIF 182
Query: 265 --HDGNSLDS--DDHVTYEHDG----FVLVLNGVRESDAGVYNCVAQNSEGSA 309
G+ + + L ++ ++ D+ Y C S A
Sbjct: 183 LIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGESLTRA 235
Score = 35.6 bits (82), Expect = 0.061
Identities = 20/163 (12%), Positives = 38/163 (23%), Gaps = 39/163 (23%)
Query: 2 DDRRSSTELVISGVQREHGGRYSCVAGNPAGV-----YRGDLHVTVNAPPIFI------- 49
R + +++ + G Y C + L VT
Sbjct: 73 GSTRKNLRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAK 132
Query: 50 --------QRPVSTTYSTGSTSRITCLVEGH-PLPQMTWF------------HDGNSLDS 88
Q S + + CL E + W+ G+ +
Sbjct: 133 KDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQN 192
Query: 89 --DDHVTYEHDG----FVLVLNGVRESDAGVYNCVAQNSEGSA 125
+ L ++ ++ D+ Y C S A
Sbjct: 193 AKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGESLTRA 235
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 39.6 bits (92), Expect = 5e-04
Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 16/101 (15%)
Query: 224 TVTGAPPIFIQRPVS-TTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD-------- 274
+ + + + G + + + + Q TWF +G L S++
Sbjct: 2 SSGSSGTARLVAGLEDVQVYDGEDAVFSL--DLSTIIQGTWFLNGEELKSNEPEGQVEPG 59
Query: 275 --HVTYEHDGFV--LVLNGVRESDAGVY-NCVAQNSEGSAE 310
E G L+L+ V+ D+G + SA
Sbjct: 60 ALRYRIEQKGLQHRLILHAVKHQDSGALVGFSCPGVQDSAA 100
Score = 39.2 bits (91), Expect = 8e-04
Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 16/97 (16%)
Query: 44 APPIFIQRPVS-TTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDD----------HV 92
+ + + G + + + + Q TWF +G L S++
Sbjct: 6 SGTARLVAGLEDVQVYDGEDAVFSL--DLSTIIQGTWFLNGEELKSNEPEGQVEPGALRY 63
Query: 93 TYEHDGFV--LVLNGVRESDAGVY-NCVAQNSEGSAE 126
E G L+L+ V+ D+G + SA
Sbjct: 64 RIEQKGLQHRLILHAVKHQDSGALVGFSCPGVQDSAA 100
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse
IGG, zinc-finger, DNA-binding, RNA-binding, tripartite
motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus
musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 40.2 bits (94), Expect = 0.001
Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 8/91 (8%)
Query: 5 RSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVN-----APPIFIQRPVSTTYST 59
RS +EL I +G + C + A + ++ AP ++ P +
Sbjct: 65 RSVSELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAK 124
Query: 60 GSTSRITCLVEG-HPLP-QMTWFHDGNSLDS 88
S +TC++ P + W +G ++
Sbjct: 125 DKVS-LTCMITDFFPEDITVEWESNGQPAEN 154
Score = 32.1 bits (73), Expect = 0.56
Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 15/117 (12%)
Query: 170 ISWSKDEAE--------FVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG 221
SW D+ E E N L + + + ++C ++ E
Sbjct: 39 FSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPAPIEK 98
Query: 222 YLTVTG----APPIFIQRPVSTTYSTGSTSRITCLVEG-HPLP-QMTWFHDGNSLDS 272
++ T AP ++ P + S +TC++ P + W +G ++
Sbjct: 99 TISKTKGRPKAPQVYTLPPPKEQMAKDKVS-LTCMITDFFPEDITVEWESNGQPAEN 154
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 41.1 bits (96), Expect = 0.001
Identities = 52/313 (16%), Positives = 92/313 (29%), Gaps = 55/313 (17%)
Query: 2 DDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGD-LHVTV-----NAPPIFIQRPVST 55
D ++ + +S + + Y C Y G VTV P ++ P S
Sbjct: 72 DRSSNTANIHLSSLTSDDSAVYYC-VREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSA 130
Query: 56 TYSTGSTSRITCLVEG-HPLP-QMTWFHDGNS---------LDSDDHVTYEHDGFVLVLN 104
T S + CLV+G P P +TW S L SD Y V V +
Sbjct: 131 A-QTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD---LYTLSSSVTVPS 186
Query: 105 GVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAP------------A 152
+ C + S + I + ++ +
Sbjct: 187 S--PRPSETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLI 244
Query: 153 GSSVEIPCKPDG----EPLPRISWSKDEAEF--------VEDRNHKIHRTGSLRLYNIGP 200
+ ++ C +P + SW D E E N +L + +
Sbjct: 245 TVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDW 304
Query: 201 QDSGLYRCTASNLLGEDVAEGYLTVTGAPP----IFIQRPVSTTYSTGSTSRITCLVEG- 255
+ ++C ++ E ++ T P ++ P +TC++
Sbjct: 305 LNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAPQVYTIPPPKEQM-AKDKVSLTCMITDF 363
Query: 256 HPLP-QMTWFHDG 267
P + W DG
Sbjct: 364 FPEDITVEWQSDG 376
Score = 29.1 bits (65), Expect = 8.0
Identities = 60/367 (16%), Positives = 109/367 (29%), Gaps = 85/367 (23%)
Query: 142 VVKPFDMRAPAGSSVEIPCKPDG-------------------EPLPRISWSKDE---AEF 179
+ +P G+SV++ CK G E + I+ S +
Sbjct: 10 LARP-------GASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQR 62
Query: 180 VEDR----NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGA----PPI 231
+D+ + T ++ L ++ DS +Y C + +TV+ A P +
Sbjct: 63 FKDKATLTRDRSSNTANIHLSSLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSV 122
Query: 232 FIQRPVSTTYSTGSTSRITCLVEG-HPLP-QMTWFHDGNS---------LDSDDHVTYEH 280
+ P S T S + CLV+G P P +TW S L SD Y
Sbjct: 123 YPLAPGSAA-QTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD---LYTL 178
Query: 281 DGFVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAP----- 335
V V + + C + S + I + ++ +
Sbjct: 179 SSSVTVPSS--PRPSETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPP 236
Query: 336 -------AGSSVEIPCKPDG----EPLPRISWSKDEAEF--------VEDRNHKIHRTGS 376
+ ++ C +P + SW D E E N +
Sbjct: 237 KPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSA 296
Query: 377 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREPSASKPSVADDT 436
L + + + ++C ++ E ++ T P +T P +
Sbjct: 297 LPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAPQVYT-------IPPPKEQM 349
Query: 437 IHMAVKL 443
V L
Sbjct: 350 AKDKVSL 356
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 40.3 bits (94), Expect = 0.002
Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 8/91 (8%)
Query: 5 RSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVN-----APPIFIQRPVSTTYST 59
RS +EL I +G + C + A + ++ P ++ P +
Sbjct: 79 RSVSELPIVERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKEEMTQ 138
Query: 60 GSTSRITCLVEG-HPLP-QMTWFHDGNSLDS 88
S ITC+V+G +P W +G ++
Sbjct: 139 SQVS-ITCMVKGFYPPDIYTEWKMNGQPQEN 168
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 40.2 bits (94), Expect = 0.002
Identities = 32/170 (18%), Positives = 49/170 (28%), Gaps = 43/170 (25%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW-----------------SKDEAEFVE 181
LV GS + + C +G P + W + V
Sbjct: 9 ATLVQPV-------GSPLSLECTVEGTSNPNLYWYRQAAGRGLQLLFYSVGIGQISSEVP 61
Query: 182 DRNHKIHRTGS----LRLYNIGPQDSGLYRCTASNLLGEDVAEGY------LTVTG---- 227
R L + DSG Y C S +G V Y LTV
Sbjct: 62 QN-LSASRPQDRQFILSSKKLLLSDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNK 120
Query: 228 --APPIFIQRPVSTTYSTGSTSRITCLVEGH--PLPQMTWFHDGNSLDSD 273
P + + P S + + CL G +++W+ +G + S
Sbjct: 121 VFPPEVAVFEPSEAEISHTQKATLVCLATGFFPDHVELSWWVNGKEVHSG 170
Score = 36.8 bits (85), Expect = 0.020
Identities = 16/102 (15%), Positives = 31/102 (30%), Gaps = 15/102 (14%)
Query: 3 DRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLH------VTV-------NAPPIFI 49
+ L + G Y C G ++ +TV P + +
Sbjct: 69 PQDRQFILSSKKLLLSDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNKVFPPEVAV 128
Query: 50 QRPVSTTYSTGSTSRITCLVEGH--PLPQMTWFHDGNSLDSD 89
P S + + CL G +++W+ +G + S
Sbjct: 129 FEPSEAEISHTQKATLVCLATGFFPDHVELSWWVNGKEVHSG 170
Score = 32.5 bits (74), Expect = 0.55
Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 19/94 (20%)
Query: 50 QRPVSTTYSTGSTSRITCLVEGHPLPQMTWF--------------HDGNSLDSD--DHVT 93
Q P + GS + C VEG P + W+ + S+ +++
Sbjct: 6 QWPATLVQPVGSPLSLECTVEGTSNPNLYWYRQAAGRGLQLLFYSVGIGQISSEVPQNLS 65
Query: 94 YEHDG---FVLVLNGVRESDAGVYNCVAQNSEGS 124
F+L + SD+G Y C S G+
Sbjct: 66 ASRPQDRQFILSSKKLLLSDSGFYLCAWSVSVGA 99
Score = 32.5 bits (74), Expect = 0.55
Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 19/94 (20%)
Query: 234 QRPVSTTYSTGSTSRITCLVEGHPLPQMTWF--------------HDGNSLDSD--DHVT 277
Q P + GS + C VEG P + W+ + S+ +++
Sbjct: 6 QWPATLVQPVGSPLSLECTVEGTSNPNLYWYRQAAGRGLQLLFYSVGIGQISSEVPQNLS 65
Query: 278 YEHDG---FVLVLNGVRESDAGVYNCVAQNSEGS 308
F+L + SD+G Y C S G+
Sbjct: 66 ASRPQDRQFILSSKKLLLSDSGFYLCAWSVSVGA 99
Score = 29.4 bits (66), Expect = 4.2
Identities = 28/160 (17%), Positives = 42/160 (26%), Gaps = 36/160 (22%)
Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW-----------------SKDEAEFVE 365
LV GS + + C +G P + W + V
Sbjct: 9 ATLVQPV-------GSPLSLECTVEGTSNPNLYWYRQAAGRGLQLLFYSVGIGQISSEVP 61
Query: 366 DRNHKIHRTGS----LRLYNIGPQDSGLYRCTASNLLGEDVAEGY------LTVTGENSV 415
R L + DSG Y C S +G V Y LTV + +
Sbjct: 62 QN-LSASRPQDRQFILSSKKLLLSDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNK 120
Query: 416 EPAPHTSREPSASKPSVADDTIHMAVKLASREVDAAVNAT 455
P + + + V LA+ V +
Sbjct: 121 VFPPEVAVFEPSEAEISHTQKATL-VCLATGFFPDHVELS 159
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 37.9 bits (88), Expect = 0.002
Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 21/110 (19%)
Query: 328 KPFDMRAPAGSSVEIPC---------------KPDGEPLPRISWSKDEAEFVEDR----N 368
K + P G S+ + C P +I +K A R +
Sbjct: 2 KARTVAGPVGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRD 61
Query: 369 HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPA 418
+ + ++ L N+ +D+G Y C +D + V E SV PA
Sbjct: 62 SPANLSFTVTLENLTEEDAGTYWCGVDTPWLQDFHD--PVVEVEVSVFPA 109
Score = 36.0 bits (83), Expect = 0.010
Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 19/102 (18%)
Query: 144 KPFDMRAPAGSSVEIPC---------------KPDGEPLPRISWSKDEAEFVEDR----N 184
K + P G S+ + C P +I +K A R +
Sbjct: 2 KARTVAGPVGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRD 61
Query: 185 HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 226
+ + ++ L N+ +D+G Y C +D + + V
Sbjct: 62 SPANLSFTVTLENLTEEDAGTYWCGVDTPWLQDFHDPVVEVE 103
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 40.2 bits (93), Expect = 0.002
Identities = 17/119 (14%), Positives = 35/119 (29%), Gaps = 13/119 (10%)
Query: 142 VVKPFDMRAPAGSSVEIPCK-------PDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLR 194
+ P S+ C I W + +++ I+RT S
Sbjct: 8 YISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSV 67
Query: 195 LYNIGPQDSGLYRCT--ASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITC 251
+ + C L ++V + G PP ++P + + ++ C
Sbjct: 68 TFTDIASLNIQLTCNILTFGQLEQNVYGITIIS-GLPP---EKPKNLSCIVNEGKKMRC 122
Score = 35.2 bits (80), Expect = 0.088
Identities = 12/93 (12%), Positives = 24/93 (25%), Gaps = 9/93 (9%)
Query: 326 VVKPFDMRAPAGSSVEIPCK-------PDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLR 378
+ P S+ C I W + +++ I+RT S
Sbjct: 8 YISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSV 67
Query: 379 LYNIGPQDSGLYRCT--ASNLLGEDVAEGYLTV 409
+ + C L ++V +
Sbjct: 68 TFTDIASLNIQLTCNILTFGQLEQNVYGITIIS 100
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 38.4 bits (89), Expect = 0.002
Identities = 21/123 (17%), Positives = 41/123 (33%), Gaps = 26/123 (21%)
Query: 326 VVKPFDMRAPAGSSVEIPC----------------KPDGEPLPRISWSKDEAEFVEDR-- 367
+ P + S+ + C + + S E E DR
Sbjct: 6 ITGPTTVNGLERGSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVS 65
Query: 368 --NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAPHTSREP 425
+++ +RT ++ + ++ D+ Y C + +T+ PAP T E
Sbjct: 66 IKDNQKNRTFTVTMEDLMKTDADTYWCGIEKTGNDLGVTVQVTID------PAPVTQEET 119
Query: 426 SAS 428
S+S
Sbjct: 120 SSS 122
Score = 38.0 bits (88), Expect = 0.003
Identities = 17/122 (13%), Positives = 40/122 (32%), Gaps = 23/122 (18%)
Query: 142 VVKPFDMRAPAGSSVEIPC----------------KPDGEPLPRISWSKDEAEFVEDR-- 183
+ P + S+ + C + + S E E DR
Sbjct: 6 ITGPTTVNGLERGSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVS 65
Query: 184 --NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTY 241
+++ +RT ++ + ++ D+ Y C + +T+ AP + +++
Sbjct: 66 IKDNQKNRTFTVTMEDLMKTDADTYWCGIEKTGNDLGVTVQVTIDPAPVT---QEETSSS 122
Query: 242 ST 243
T
Sbjct: 123 PT 124
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 37.6 bits (87), Expect = 0.003
Identities = 15/85 (17%), Positives = 24/85 (28%), Gaps = 25/85 (29%)
Query: 149 RAPAGSSVEIPCK---PDGEPLPRISWSKDEAEFVEDRNHKIHRTG-------------- 191
+ G + +PC P L + W K + + N +
Sbjct: 5 KVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLK 64
Query: 192 --------SLRLYNIGPQDSGLYRC 208
SL + N+ D G Y C
Sbjct: 65 GDLNKGDVSLIIKNVTLDDHGTYCC 89
Score = 37.6 bits (87), Expect = 0.003
Identities = 15/85 (17%), Positives = 24/85 (28%), Gaps = 25/85 (29%)
Query: 333 RAPAGSSVEIPCK---PDGEPLPRISWSKDEAEFVEDRNHKIHRTG-------------- 375
+ G + +PC P L + W K + + N +
Sbjct: 5 KVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLK 64
Query: 376 --------SLRLYNIGPQDSGLYRC 392
SL + N+ D G Y C
Sbjct: 65 GDLNKGDVSLIIKNVTLDDHGTYCC 89
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 37.5 bits (87), Expect = 0.003
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 26/90 (28%)
Query: 145 PFDMRAPAGSSVEIPCK---PDGEPLP---RISWSKDEAE------------FVEDRNH- 185
P +++ +GS + IPC P P+ W D + V+ R
Sbjct: 7 PKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRG 66
Query: 186 -------KIHRTGSLRLYNIGPQDSGLYRC 208
H+ +L L ++ P+DSG Y
Sbjct: 67 RAELMGNMDHKVCNLLLKDLKPEDSGTYNF 96
Score = 37.5 bits (87), Expect = 0.003
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 26/90 (28%)
Query: 329 PFDMRAPAGSSVEIPCK---PDGEPLP---RISWSKDEAE------------FVEDRNH- 369
P +++ +GS + IPC P P+ W D + V+ R
Sbjct: 7 PKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRG 66
Query: 370 -------KIHRTGSLRLYNIGPQDSGLYRC 392
H+ +L L ++ P+DSG Y
Sbjct: 67 RAELMGNMDHKVCNLLLKDLKPEDSGTYNF 96
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 39.5 bits (92), Expect = 0.003
Identities = 28/171 (16%), Positives = 49/171 (28%), Gaps = 51/171 (29%)
Query: 141 LVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW------------------SKDEAEFVED 182
+V G +V + C P +SW E + +
Sbjct: 11 RLVPR-------GQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPG 63
Query: 183 RNHKIHRTGS-------LRLYNIGPQDSGLYRCTASNLLGEDVAEGY------LTVTG-- 227
+ LRL CT+S + + Y LTV
Sbjct: 64 A-----DYLATRVTDTELRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDL 118
Query: 228 ----APPIFIQRPVSTTYSTGSTSRITCLVEG-HPLP-QMTWFHDGNSLDS 272
P + + P S + + CL G +P +++W+ +G + S
Sbjct: 119 KNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHS 169
Score = 35.3 bits (81), Expect = 0.064
Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 15/98 (15%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLH------VTVN-------APPIFIQRP 52
+ TEL + G C + G L+ +TV P + + P
Sbjct: 72 TDTELRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEP 131
Query: 53 VSTTYSTGSTSRITCLVEG-HPLP-QMTWFHDGNSLDS 88
S + + CL G +P +++W+ +G + S
Sbjct: 132 SEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHS 169
Score = 29.9 bits (67), Expect = 4.0
Identities = 19/126 (15%), Positives = 30/126 (23%), Gaps = 43/126 (34%)
Query: 325 LVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW------------------SKDEAEFVED 366
+V G +V + C P +SW E + +
Sbjct: 11 RLVPR-------GQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPG 63
Query: 367 RNHKIHRTGS-------LRLYNIGPQDSGLYRCTASNLLGEDVAEGY------LTVTGEN 413
+ LRL CT+S + + Y LTV +
Sbjct: 64 A-----DYLATRVTDTELRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDL 118
Query: 414 SVEPAP 419
P
Sbjct: 119 KNVFPP 124
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 37.5 bits (86), Expect = 0.004
Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 8/89 (8%)
Query: 47 IFIQRPVSTTYSTGSTSRITCLV-EGHPLPQMTWF-HDGNS--LDSDDHVTYEHDG---- 98
++I+R + G + C V P +TW +G + D +++ +
Sbjct: 13 LYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISF 72
Query: 99 FVLVLNGVRESDAGVYNCVAQNSEGSAES 127
F+L V +D G Y C A ES
Sbjct: 73 FILHFEPVLPNDNGSYRCSANFQSNLIES 101
Score = 37.5 bits (86), Expect = 0.004
Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 8/89 (8%)
Query: 231 IFIQRPVSTTYSTGSTSRITCLV-EGHPLPQMTWF-HDGNS--LDSDDHVTYEHDG---- 282
++I+R + G + C V P +TW +G + D +++ +
Sbjct: 13 LYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISF 72
Query: 283 FVLVLNGVRESDAGVYNCVAQNSEGSAES 311
F+L V +D G Y C A ES
Sbjct: 73 FILHFEPVLPNDNGSYRCSANFQSNLIES 101
Score = 34.8 bits (79), Expect = 0.034
Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 13/78 (16%)
Query: 149 RAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTG----------SLRLYN 197
AG E+ C P ++W K + +T L
Sbjct: 22 SILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDR--QTSWKEEKNISFFILHFEP 79
Query: 198 IGPQDSGLYRCTASNLLG 215
+ P D+G YRC+A+
Sbjct: 80 VLPNDNGSYRCSANFQSN 97
Score = 34.8 bits (79), Expect = 0.034
Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 13/78 (16%)
Query: 333 RAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTG----------SLRLYN 381
AG E+ C P ++W K + +T L
Sbjct: 22 SILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDR--QTSWKEEKNISFFILHFEP 79
Query: 382 IGPQDSGLYRCTASNLLG 399
+ P D+G YRC+A+
Sbjct: 80 VLPNDNGSYRCSANFQSN 97
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 36.9 bits (85), Expect = 0.005
Identities = 15/85 (17%), Positives = 23/85 (27%), Gaps = 24/85 (28%)
Query: 148 MRAPAGSSVEIPCK--PDGEPLPRISWSKDEAEFVEDRNHKIHRTG-------------- 191
+ G V +PC + + W K + + G
Sbjct: 6 IIGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLL 65
Query: 192 --------SLRLYNIGPQDSGLYRC 208
SL + N DSG+Y C
Sbjct: 66 GKVQFGEVSLTISNTNRGDSGVYCC 90
Score = 36.9 bits (85), Expect = 0.005
Identities = 15/85 (17%), Positives = 23/85 (27%), Gaps = 24/85 (28%)
Query: 332 MRAPAGSSVEIPCK--PDGEPLPRISWSKDEAEFVEDRNHKIHRTG-------------- 375
+ G V +PC + + W K + + G
Sbjct: 6 IIGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLL 65
Query: 376 --------SLRLYNIGPQDSGLYRC 392
SL + N DSG+Y C
Sbjct: 66 GKVQFGEVSLTISNTNRGDSGVYCC 90
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 37.2 bits (86), Expect = 0.006
Identities = 11/118 (9%), Positives = 23/118 (19%), Gaps = 32/118 (27%)
Query: 145 PFDMRAPAGSSVEIPCK---PDGEPLP----RISWSKDEAEFVEDRN------------- 184
+ G V + C P W + +
Sbjct: 13 QSSVTVQEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEE 72
Query: 185 ---------HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY---LTVTGAPP 230
+ +L + + D+G Y + + + VT
Sbjct: 73 TRDRFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNVTALTH 130
Score = 35.7 bits (82), Expect = 0.016
Identities = 9/97 (9%), Positives = 18/97 (18%), Gaps = 29/97 (29%)
Query: 329 PFDMRAPAGSSVEIPCK---PDGEPLP----RISWSKDEAEFVEDRN------------- 368
+ G V + C P W + +
Sbjct: 13 QSSVTVQEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEE 72
Query: 369 ---------HKIHRTGSLRLYNIGPQDSGLYRCTASN 396
+ +L + + D+G Y
Sbjct: 73 TRDRFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEK 109
Score = 30.7 bits (69), Expect = 1.0
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
Query: 2 DDRRSSTELVISGVQREHGGRYSCVA--GNPAGVYRGD-LHVTVNAPPIFIQRP 52
D + + L I + GRY GN Y+ D L V V A RP
Sbjct: 82 DPQTKNCTLSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNVTALT---HRP 132
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 38.3 bits (89), Expect = 0.007
Identities = 33/169 (19%), Positives = 59/169 (34%), Gaps = 44/169 (26%)
Query: 141 LVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW--------------------SKDEAEFV 180
++ K G+SV+I C+ + W + E
Sbjct: 34 VISKS-------GTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVE 86
Query: 181 EDR---NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY------LTVTG---- 227
+D+ NH +L + + P+DS Y C+A +L E + LTVT
Sbjct: 87 KDKFLINHASLTLSTLTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKN 146
Query: 228 --APPIFIQRPVSTTYSTGSTSRITCLVEGH--PLPQMTWFHDGNSLDS 272
P + + P S + + CL G +++W+ +G + S
Sbjct: 147 VFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHS 195
Score = 35.6 bits (82), Expect = 0.064
Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 17/102 (16%)
Query: 4 RRSSTE--LVISGVQREHGGRYSCVAGNPAGVYRGD--------LHVT-----VNAPPIF 48
S T L ++ E Y C A + + L VT V P +
Sbjct: 94 HASLTLSTLTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVA 153
Query: 49 IQRPVSTTYSTGSTSRITCLVEGH--PLPQMTWFHDGNSLDS 88
+ P S + + CL G +++W+ +G + S
Sbjct: 154 VFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHS 195
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 36.1 bits (83), Expect = 0.008
Identities = 16/88 (18%), Positives = 22/88 (25%), Gaps = 24/88 (27%)
Query: 145 PFDMRAPAGSSVEIPCK--PDGEPLPRISWSKDEAEFVEDRNHKIHRTG----------- 191
++ AG V +PC + + W E I G
Sbjct: 4 HTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRY 63
Query: 192 -----------SLRLYNIGPQDSGLYRC 208
SL + N D G Y C
Sbjct: 64 QLKGNISEGNVSLTIENTVVGDGGPYCC 91
Score = 36.1 bits (83), Expect = 0.008
Identities = 16/88 (18%), Positives = 22/88 (25%), Gaps = 24/88 (27%)
Query: 329 PFDMRAPAGSSVEIPCK--PDGEPLPRISWSKDEAEFVEDRNHKIHRTG----------- 375
++ AG V +PC + + W E I G
Sbjct: 4 HTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRY 63
Query: 376 -----------SLRLYNIGPQDSGLYRC 392
SL + N D G Y C
Sbjct: 64 QLKGNISEGNVSLTIENTVVGDGGPYCC 91
Score = 28.8 bits (64), Expect = 3.7
Identities = 9/40 (22%), Positives = 13/40 (32%)
Query: 101 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPR 140
L + D G Y CV + M+ + PR
Sbjct: 76 LTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVKPELVPR 115
Score = 28.8 bits (64), Expect = 3.7
Identities = 9/40 (22%), Positives = 13/40 (32%)
Query: 285 LVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPR 324
L + D G Y CV + M+ + PR
Sbjct: 76 LTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVKPELVPR 115
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 36.4 bits (84), Expect = 0.008
Identities = 17/87 (19%), Positives = 26/87 (29%), Gaps = 23/87 (26%)
Query: 145 PFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTG------------ 191
+++ G V +PC + W + + +N I G
Sbjct: 4 YVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYN 63
Query: 192 ----------SLRLYNIGPQDSGLYRC 208
SL + N DSGLY C
Sbjct: 64 LKGHISEGDVSLTIENSVESDSGLYCC 90
Score = 36.4 bits (84), Expect = 0.008
Identities = 17/87 (19%), Positives = 26/87 (29%), Gaps = 23/87 (26%)
Query: 329 PFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTG------------ 375
+++ G V +PC + W + + +N I G
Sbjct: 4 YVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYN 63
Query: 376 ----------SLRLYNIGPQDSGLYRC 392
SL + N DSGLY C
Sbjct: 64 LKGHISEGDVSLTIENSVESDSGLYCC 90
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
FUC MAN; 4.00A {Mus musculus}
Length = 488
Score = 38.4 bits (88), Expect = 0.010
Identities = 41/281 (14%), Positives = 74/281 (26%), Gaps = 39/281 (13%)
Query: 132 RINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTG 191
I+ R V P D AGS++ I C + L + +T
Sbjct: 197 NISWIRNTETNVFPQDKVVLAGSNMTICCMSPTKVLSGQIGNTLRPLIHLYG-----QTV 251
Query: 192 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITC 251
++ + NI ++ +D G + G PP P + T I C
Sbjct: 252 AIHILNIPVSENSGTNIIFIT---DDDVYGTVVFAGYPP---DVPQKLSCETHDLKEIIC 305
Query: 252 LVEGHPLPQMTWFHD----------GNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCV 301
+ + + G S ++ + L + + +
Sbjct: 306 SWNPGRITGLVGPRNTEYTLFESISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLT 365
Query: 302 AQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEA 361
+N G A+S +I + V P V+ + SW
Sbjct: 366 GRNPLGQAQSAVVINVTER------VA---PHDPTSLKVK----DINSTVVTFSWYLPGN 412
Query: 362 EFVEDRNHKIH-----RTGSLRLYNIGPQDSGLYRCTASNL 397
+ +I +R I + Y L
Sbjct: 413 FTKINLLCQIEICKANSKKEVRNATIRGAEDSTYHVAVDKL 453
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 35.9 bits (83), Expect = 0.010
Identities = 13/106 (12%), Positives = 32/106 (30%), Gaps = 22/106 (20%)
Query: 145 PFDMRAPAGSSVEIPC----------------KPDGEPLPRISWSKDEAEFVEDR----N 184
P ++ S+ + C P + E ++R +
Sbjct: 8 PEEVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRD 67
Query: 185 HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG-YLTVTGAP 229
++ ++ + ++ D+G+Y C G D + + P
Sbjct: 68 NQRDFIFTVTMEDLRMSDAGIYWC-GITKGGLDPMFKVTVNIGPVP 112
Score = 34.7 bits (80), Expect = 0.025
Identities = 16/111 (14%), Positives = 35/111 (31%), Gaps = 26/111 (23%)
Query: 329 PFDMRAPAGSSVEIPC----------------KPDGEPLPRISWSKDEAEFVEDR----N 368
P ++ S+ + C P + E ++R +
Sbjct: 8 PEEVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRD 67
Query: 369 HKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGENSVEPAP 419
++ ++ + ++ D+G+Y C G D +TV + P P
Sbjct: 68 NQRDFIFTVTMEDLRMSDAGIYWC-GITKGGLDPMFK-VTVN----IGPVP 112
Score = 28.9 bits (65), Expect = 3.2
Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 7/73 (9%)
Query: 56 TYSTGSTSRITCLVEGHPLPQMTWF---HDGNSLDSDDHVTYEHDG----FVLVLNGVRE 108
Y++G +G P L + V+ + F + + +R
Sbjct: 24 RYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTVTMEDLRM 83
Query: 109 SDAGVYNCVAQNS 121
SDAG+Y C
Sbjct: 84 SDAGIYWCGITKG 96
Score = 28.9 bits (65), Expect = 3.2
Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 7/73 (9%)
Query: 240 TYSTGSTSRITCLVEGHPLPQMTWF---HDGNSLDSDDHVTYEHDG----FVLVLNGVRE 292
Y++G +G P L + V+ + F + + +R
Sbjct: 24 RYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTVTMEDLRM 83
Query: 293 SDAGVYNCVAQNS 305
SDAG+Y C
Sbjct: 84 SDAGIYWCGITKG 96
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 35.7 bits (82), Expect = 0.011
Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 20/85 (23%)
Query: 145 PFDMRAPAGSSVEIPCK-PDGEPLPRISWS------------KDEAEFV-------EDRN 184
F + G SV P + + I+W+ + A V +R
Sbjct: 6 IFTVNGILGESVTFPVNIQEPRQVKIIAWTSKTSVAYVTPGDSETAPVVTVTHRNYYERI 65
Query: 185 HKIHRTGSLRLYNIGPQDSGLYRCT 209
H + +L + ++ +D+G Y+
Sbjct: 66 HALGPNYNLVISDLRMEDAGDYKAD 90
Score = 35.7 bits (82), Expect = 0.011
Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 20/85 (23%)
Query: 329 PFDMRAPAGSSVEIPCK-PDGEPLPRISWS------------KDEAEFV-------EDRN 368
F + G SV P + + I+W+ + A V +R
Sbjct: 6 IFTVNGILGESVTFPVNIQEPRQVKIIAWTSKTSVAYVTPGDSETAPVVTVTHRNYYERI 65
Query: 369 HKIHRTGSLRLYNIGPQDSGLYRCT 393
H + +L + ++ +D+G Y+
Sbjct: 66 HALGPNYNLVISDLRMEDAGDYKAD 90
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 36.0 bits (82), Expect = 0.012
Identities = 14/76 (18%), Positives = 20/76 (26%), Gaps = 12/76 (15%)
Query: 149 RAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTGS-----------LRLY 196
A G +I C P ++W K S L
Sbjct: 25 SAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFK 84
Query: 197 NIGPQDSGLYRCTASN 212
I D+G Y C+ +
Sbjct: 85 PIHLSDNGSYSCSTNF 100
Score = 36.0 bits (82), Expect = 0.012
Identities = 14/76 (18%), Positives = 20/76 (26%), Gaps = 12/76 (15%)
Query: 333 RAPAGSSVEIPCK-PDGEPLPRISWSKDEAEFVEDRNHKIHRTGS-----------LRLY 380
A G +I C P ++W K S L
Sbjct: 25 SAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFK 84
Query: 381 NIGPQDSGLYRCTASN 396
I D+G Y C+ +
Sbjct: 85 PIHLSDNGSYSCSTNF 100
Score = 32.1 bits (72), Expect = 0.28
Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 11/92 (11%)
Query: 47 IFIQRPVSTTYSTGSTSRITCLVE-GHPLPQMTW----------FHDGNSLDSDDHVTYE 95
+ I+R + TG +I C V+ P +TW G L +
Sbjct: 16 LNIKRNSKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRS 75
Query: 96 HDGFVLVLNGVRESDAGVYNCVAQNSEGSAES 127
FVL + SD G Y+C + S
Sbjct: 76 VPVFVLHFKPIHLSDNGSYSCSTNFNSQVINS 107
Score = 32.1 bits (72), Expect = 0.28
Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 11/92 (11%)
Query: 231 IFIQRPVSTTYSTGSTSRITCLVE-GHPLPQMTW----------FHDGNSLDSDDHVTYE 279
+ I+R + TG +I C V+ P +TW G L +
Sbjct: 16 LNIKRNSKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRS 75
Query: 280 HDGFVLVLNGVRESDAGVYNCVAQNSEGSAES 311
FVL + SD G Y+C + S
Sbjct: 76 VPVFVLHFKPIHLSDNGSYSCSTNFNSQVINS 107
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 36.0 bits (82), Expect = 0.013
Identities = 30/121 (24%), Positives = 38/121 (31%), Gaps = 40/121 (33%)
Query: 333 RAPAGSSVEIPCKPDGEP---LPRISWSK----DEAEFVEDRNHKIHRTG---------- 375
AG +VE+PC P ISW K D + V N+ G
Sbjct: 15 EVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYK 74
Query: 376 ------------------SLRLYNIGPQDSGLYRCTASN-----LLGEDVAEGYLTVTGE 412
+LRL ++ PQD G Y C + G D L VTG
Sbjct: 75 ESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGH 134
Query: 413 N 413
Sbjct: 135 T 135
Score = 35.2 bits (80), Expect = 0.024
Identities = 30/119 (25%), Positives = 38/119 (31%), Gaps = 40/119 (33%)
Query: 149 RAPAGSSVEIPCKPDGEP---LPRISWSK----DEAEFVEDRNHKIHRTG---------- 191
AG +VE+PC P ISW K D + V N+ G
Sbjct: 15 EVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYK 74
Query: 192 ------------------SLRLYNIGPQDSGLYRCTASN-----LLGEDVAEGYLTVTG 227
+LRL ++ PQD G Y C + G D L VTG
Sbjct: 75 ESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTG 133
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 35.7 bits (82), Expect = 0.016
Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 38/106 (35%)
Query: 141 LVVKPFDMRAPAGSSVEIPCK----PDGEPLPRISWSK---------------------- 174
V ++R G +VE+PC G + ++W +
Sbjct: 5 RVQVLPEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFP 64
Query: 175 ------DEAEFVEDRNHKIH------RTGSLRLYNIGPQDSGLYRC 208
+ FV + + +L L+ + +D G Y C
Sbjct: 65 SPKPGSERLSFVSAKQSTGQDTEAELQDATLALHGLTVEDEGNYTC 110
Score = 35.7 bits (82), Expect = 0.016
Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 38/106 (35%)
Query: 325 LVVKPFDMRAPAGSSVEIPCK----PDGEPLPRISWSK---------------------- 358
V ++R G +VE+PC G + ++W +
Sbjct: 5 RVQVLPEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFP 64
Query: 359 ------DEAEFVEDRNHKIH------RTGSLRLYNIGPQDSGLYRC 392
+ FV + + +L L+ + +D G Y C
Sbjct: 65 SPKPGSERLSFVSAKQSTGQDTEAELQDATLALHGLTVEDEGNYTC 110
Score = 35.7 bits (82), Expect = 0.017
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 10 LVISGVQREHGGRYSC-VAGNPAGVYRGDLHVTV 42
L + G+ E G Y+C A P G RG + V
Sbjct: 95 LALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
Score = 28.8 bits (64), Expect = 3.5
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 101 LVLNGVRESDAGVYNC-VAQNSEGSAESV 128
L L+G+ D G Y C A +GS +
Sbjct: 95 LALHGLTVEDEGNYTCEFATFPKGSVRGM 123
Score = 28.8 bits (64), Expect = 3.5
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 285 LVLNGVRESDAGVYNC-VAQNSEGSAESV 312
L L+G+ D G Y C A +GS +
Sbjct: 95 LALHGLTVEDEGNYTCEFATFPKGSVRGM 123
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 36.5 bits (84), Expect = 0.021
Identities = 28/183 (15%), Positives = 50/183 (27%), Gaps = 22/183 (12%)
Query: 226 TGAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLP---QMTWFHDGNSLDSDDHVTYEHDG 282
++ P +++ CLV P +TW + + D + +
Sbjct: 10 CSPIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHF 69
Query: 283 -------FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAP 335
+ ++ + C Q+ E + N ++ PF AP
Sbjct: 70 NGTYSASSAVPVSTQDWLSGERFTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPF---AP 126
Query: 336 -----AGSSVEIPCKPDGEPLPR---ISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDS 387
+ S V + C G PR I W +D R N D
Sbjct: 127 HPEELSLSRVTLSCLVRG-FRPRDIEIRWLRDHRAVPATEFVTTAVLPEERTANGAGGDG 185
Query: 388 GLY 390
+
Sbjct: 186 DTF 188
Score = 36.5 bits (84), Expect = 0.023
Identities = 32/232 (13%), Positives = 61/232 (26%), Gaps = 47/232 (20%)
Query: 44 APPIFIQRPVSTTYSTGSTSRITCLVEGHPLP---QMTWFHDGNSLDSDDHVTYEHDG-- 98
++ P +++ CLV P +TW + + D + +
Sbjct: 12 PIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNG 71
Query: 99 -----FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAP-- 151
+ ++ + C Q+ E + N ++ PF AP
Sbjct: 72 TYSASSAVPVSTQDWLSGERFTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPF---APHP 128
Query: 152 ---AGSSVEIPCKPDGEPLPR---ISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGL 205
+ S V + C G PR I W +D R N D
Sbjct: 129 EELSLSRVTLSCLVRG-FRPRDIEIRWLRDHRAVPATEFVTTAVLPEERTANGAGGDGDT 187
Query: 206 YRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVEGHP 257
+ ++V + ++ G+ C+ H
Sbjct: 188 FFVY-----------SKMSVE-----------TAKWNGGTV--FACMA-VHE 214
Score = 36.5 bits (84), Expect = 0.025
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 9/97 (9%)
Query: 4 RRSSTELVISGVQREHGGRYSCVAGNP--AGVYRGDLHVT---VNAPPIFIQRPVSTTYS 58
SS + +S G R++C + ++ P I+ P S
Sbjct: 74 SASSA-VPVSTQDWLSGERFTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPEELS 132
Query: 59 TGSTSRITCLVEGHPLPQMT--WFHDGNSLDSDDHVT 93
+ ++CLV G + W D ++ + + VT
Sbjct: 133 LSRVT-LSCLVRGFRPRDIEIRWLRDHRAVPATEFVT 168
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1
neutralizing antibody, GP120, immune system; HET: PCA
MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L*
2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A*
1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A
1mcl_A* 1mcn_A* 1mcq_A 1mcr_A ...
Length = 211
Score = 35.9 bits (83), Expect = 0.037
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 10 LVISGVQREHGGRYSC--VAGNPAGVYRGDLHVTVN-----APPIFIQRPVSTTYSTGST 62
L +SG+Q + Y C + GN ++ G +TV AP + + P S
Sbjct: 70 LTVSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKA 129
Query: 63 SRITCLVEG--HPLPQMTWFHDGNSLDS 88
+ + CL+ + W D + + +
Sbjct: 130 T-LVCLISDFYPGAVTVAWKADSSPVKA 156
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 36.1 bits (83), Expect = 0.039
Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 17/102 (16%)
Query: 5 RSSTE---LVISGVQREHGGRYSCVAGNPAGVY------------RGDLHVTVNAPPIFI 49
R S E L++ Y C +G G Y + V P + +
Sbjct: 66 RPSQEQFSLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSL 125
Query: 50 QRPVSTTYSTGSTSRITCLVEG-HPLP-QMTWFHDGNSLDSD 89
P + + + CL G P +++W+ +G + S
Sbjct: 126 FEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSG 167
Score = 34.5 bits (79), Expect = 0.12
Identities = 30/169 (17%), Positives = 50/169 (29%), Gaps = 41/169 (24%)
Query: 139 PR-LVVKPFDMRAPAGSSVEIPCKPD-------------GEPLPRISWSKD----EAEFV 180
PR V G V + C+ G L I +S E +
Sbjct: 6 PRNKVAVT-------GGKVTLSCQQTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDI 58
Query: 181 EDR---NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLG--EDVAEGYLT---------VT 226
D + SL L P + +Y C + G + G T
Sbjct: 59 PDGYKASRPSQEQFSLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQV 118
Query: 227 GAPPIFIQRPVSTTYSTGSTSRITCLVEG-HPLP-QMTWFHDGNSLDSD 273
P + + P + + + CL G P +++W+ +G + S
Sbjct: 119 TPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSG 167
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 34.6 bits (79), Expect = 0.063
Identities = 25/142 (17%), Positives = 41/142 (28%), Gaps = 29/142 (20%)
Query: 318 NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW--------------------- 356
+AP L + P M A G V++ C+ G SW
Sbjct: 5 AKPQAPELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASS 64
Query: 357 ----SKDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTV 409
+ DE + T L L ++ G Y C+ + + + V
Sbjct: 65 HNKITWDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSV-VPV 123
Query: 410 TGENSVEPAPHTSREPSASKPS 431
+ + R PS P+
Sbjct: 124 LQKVNSTTTKPVLRTPSPVHPT 145
Score = 34.6 bits (79), Expect = 0.071
Identities = 25/158 (15%), Positives = 41/158 (25%), Gaps = 36/158 (22%)
Query: 46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFH------------------DGNSLD 87
P P G + C V G +W N +
Sbjct: 10 PELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKIT 69
Query: 88 SDDHVTYEHDG---------FVLVLNGVRESDAGVYNCVAQNS----EGSAESVAMIRIN 134
D+ + +VL LN + + G Y C ++ S V +
Sbjct: 70 WDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVNS 129
Query: 135 GHRAPRLVVKPFDMRAPAGSSVEI---PCKPDGEPLPR 169
+ V++ P G+S C+P G
Sbjct: 130 T--TTKPVLRTPSPVHPTGTSQPQRPEDCRPRGSVKGT 165
Score = 34.6 bits (79), Expect = 0.071
Identities = 25/158 (15%), Positives = 41/158 (25%), Gaps = 36/158 (22%)
Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWFH------------------DGNSLD 271
P P G + C V G +W N +
Sbjct: 10 PELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKIT 69
Query: 272 SDDHVTYEHDG---------FVLVLNGVRESDAGVYNCVAQNS----EGSAESVAMIRIN 318
D+ + +VL LN + + G Y C ++ S V +
Sbjct: 70 WDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVNS 129
Query: 319 GHRAPRLVVKPFDMRAPAGSSVEI---PCKPDGEPLPR 353
+ V++ P G+S C+P G
Sbjct: 130 T--TTKPVLRTPSPVHPTGTSQPQRPEDCRPRGSVKGT 165
Score = 31.1 bits (70), Expect = 1.0
Identities = 23/153 (15%), Positives = 39/153 (25%), Gaps = 32/153 (20%)
Query: 134 NGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW--------------------- 172
+AP L + P M A G V++ C+ G SW
Sbjct: 5 AKPQAPELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASS 64
Query: 173 ----SKDEAEFVEDRNHKIHRTG---SLRLYNIGPQDSGLYRCTASN----LLGEDVAEG 221
+ DE + T L L ++ G Y C+ + V
Sbjct: 65 HNKITWDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVL 124
Query: 222 YLTVTGAPPIFIQRPVSTTYSTGSTSRITCLVE 254
+ ++ P + S +
Sbjct: 125 QKVNSTTTKPVLRTPSPVHPTGTSQPQRPEDCR 157
Score = 30.0 bits (67), Expect = 2.4
Identities = 10/74 (13%), Positives = 23/74 (31%), Gaps = 7/74 (9%)
Query: 4 RRSSTE--LVISGVQREHGGRYSCVA-GNPAGVYRGDLHVT----VNAPPIFIQRPVSTT 56
R ++ + L ++ +E+ G Y C N + + V ++ P
Sbjct: 84 RDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRTPSPVH 143
Query: 57 YSTGSTSRITCLVE 70
+ S +
Sbjct: 144 PTGTSQPQRPEDCR 157
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 33.3 bits (76), Expect = 0.085
Identities = 19/104 (18%), Positives = 31/104 (29%), Gaps = 22/104 (21%)
Query: 145 PFDMRAPAGSSVEIPCK------------------PDGEPLPRISWSKDEAEFVEDR--- 183
P ++ + G+SV I C G + IS + R
Sbjct: 7 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANL 66
Query: 184 -NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 226
N + T + + + DSG Y+C + L V
Sbjct: 67 TNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVL 110
Score = 33.3 bits (76), Expect = 0.085
Identities = 19/104 (18%), Positives = 31/104 (29%), Gaps = 22/104 (21%)
Query: 329 PFDMRAPAGSSVEIPCK------------------PDGEPLPRISWSKDEAEFVEDR--- 367
P ++ + G+SV I C G + IS + R
Sbjct: 7 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANL 66
Query: 368 -NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVT 410
N + T + + + DSG Y+C + L V
Sbjct: 67 TNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVL 110
>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell
receptor, signalling, immune SY; 4.10A {Cricetulus
migratorius}
Length = 82
Score = 32.3 bits (73), Expect = 0.11
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 8/67 (11%)
Query: 59 TGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVA 118
+G++ +TC ++ + W +G L F V D+G Y C
Sbjct: 13 SGTSVELTCPLD--SDENLKWEKNGQELPQKHDKHLVLQDFSEV------EDSGYYVCYT 64
Query: 119 QNSEGSA 125
S +
Sbjct: 65 PASNKNT 71
Score = 32.3 bits (73), Expect = 0.11
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 8/67 (11%)
Query: 243 TGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVA 302
+G++ +TC ++ + W +G L F V D+G Y C
Sbjct: 13 SGTSVELTCPLD--SDENLKWEKNGQELPQKHDKHLVLQDFSEV------EDSGYYVCYT 64
Query: 303 QNSEGSA 309
S +
Sbjct: 65 PASNKNT 71
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 34.9 bits (79), Expect = 0.12
Identities = 30/241 (12%), Positives = 61/241 (25%), Gaps = 37/241 (15%)
Query: 142 VVKPFDMRAPAGSSVEIPCK-----PDGEPLPRISWSKDEAEFVEDRNHKIHRTG---SL 193
+ G + C +P P+I W R ++ +
Sbjct: 4 HISVSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESII 63
Query: 194 RLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSRITCLV 253
L ++ + L + + + L G PP + +TS + C
Sbjct: 64 TLPHLNHTQAFLSCSLNWGNSLQILDQVELRA-GYPPAIPHNL--SCLMNLTTSSLICQW 120
Query: 254 EGHPLPQMT-------WFHDGNSLDSDDHVTYEHDGFVLV-----LNGVRESDAGVYNCV 301
E P + + GN D + +
Sbjct: 121 EPGPETHLPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQ 180
Query: 302 AQNSEGSAES----VAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWS 357
A+N+ G++ S + + + P L A + + ++SW
Sbjct: 181 AENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCL----------QLSWE 230
Query: 358 K 358
Sbjct: 231 P 231
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 33.0 bits (75), Expect = 0.15
Identities = 16/103 (15%), Positives = 26/103 (25%), Gaps = 27/103 (26%)
Query: 46 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWF------------------HDGNSLD 87
P P G + C V G +W N +
Sbjct: 5 PELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKIT 64
Query: 88 SDDHVTYEHDG---------FVLVLNGVRESDAGVYNCVAQNS 121
D+ + +VL LN + + G Y C ++
Sbjct: 65 WDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISN 107
Score = 33.0 bits (75), Expect = 0.15
Identities = 16/103 (15%), Positives = 26/103 (25%), Gaps = 27/103 (26%)
Query: 230 PIFIQRPVSTTYSTGSTSRITCLVEGHPLPQMTWF------------------HDGNSLD 271
P P G + C V G +W N +
Sbjct: 5 PELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKIT 64
Query: 272 SDDHVTYEHDG---------FVLVLNGVRESDAGVYNCVAQNS 305
D+ + +VL LN + + G Y C ++
Sbjct: 65 WDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISN 107
Score = 28.0 bits (62), Expect = 6.4
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 137 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW 172
+AP L + P M A G V++ C+ G SW
Sbjct: 3 QAPELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSW 38
Score = 28.0 bits (62), Expect = 6.4
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 321 RAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW 356
+AP L + P M A G V++ C+ G SW
Sbjct: 3 QAPELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSW 38
Score = 28.0 bits (62), Expect = 7.7
Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 4 RRSSTE--LVISGVQREHGGRYSCVA-GNPAGVYRGDLHVTVNAPP 46
R ++ + L ++ +E+ G Y C N + + V
Sbjct: 79 RDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVSS 124
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 32.4 bits (74), Expect = 0.16
Identities = 17/69 (24%), Positives = 20/69 (28%), Gaps = 2/69 (2%)
Query: 54 STTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGV 113
S S G T + C + +L D E D DAG
Sbjct: 13 SQGVSLGDTVTLRC--HLPRMAAWVQLWLNGTLRFDKEKDKEQDAAEFSFAVTNLEDAGT 70
Query: 114 YNCVAQNSE 122
Y C Q SE
Sbjct: 71 YQCRYQVSE 79
Score = 32.4 bits (74), Expect = 0.16
Identities = 17/69 (24%), Positives = 20/69 (28%), Gaps = 2/69 (2%)
Query: 238 STTYSTGSTSRITCLVEGHPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGV 297
S S G T + C + +L D E D DAG
Sbjct: 13 SQGVSLGDTVTLRC--HLPRMAAWVQLWLNGTLRFDKEKDKEQDAAEFSFAVTNLEDAGT 70
Query: 298 YNCVAQNSE 306
Y C Q SE
Sbjct: 71 YQCRYQVSE 79
Score = 29.3 bits (66), Expect = 1.7
Identities = 14/88 (15%), Positives = 24/88 (27%), Gaps = 13/88 (14%)
Query: 335 PAGSSVEIPCKPDGEPLP--RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRC 392
G +V + C P + + + K +D+G Y+C
Sbjct: 17 SLGDTVTLRCH---LPRMAAWVQLWLNGTLRFDKEKDKEQDAAEFSFAVTNLEDAGTYQC 73
Query: 393 ----TASNLLGE--DVAEGYLTVTGENS 414
+ D E L +T E
Sbjct: 74 RYQVSEPLWTSNQSDPVE--LVLTIEGR 99
Score = 29.3 bits (66), Expect = 1.9
Identities = 13/88 (14%), Positives = 23/88 (26%), Gaps = 13/88 (14%)
Query: 151 PAGSSVEIPCKPDGEPLP--RISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRC 208
G +V + C P + + + K +D+G Y+C
Sbjct: 17 SLGDTVTLRCH---LPRMAAWVQLWLNGTLRFDKEKDKEQDAAEFSFAVTNLEDAGTYQC 73
Query: 209 ----TASNLLGE--DVAEGYLTVTGAPP 230
+ D E L +T
Sbjct: 74 RYQVSEPLWTSNQSDPVE--LVLTIEGR 99
Score = 28.9 bits (65), Expect = 2.2
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 2 DDRRSSTELVISGVQREHGGRYSC 25
D + + E + E G Y C
Sbjct: 50 DKEQDAAEFSFAVTNLEDAGTYQC 73
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas
reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A
Length = 224
Score = 33.7 bits (77), Expect = 0.20
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Query: 615 DRRVRDKLQRLYGHPG-FSYHDVLSPRQIELIANLS-GCMEHQRTANC-SDLCFHTKYRT 671
R ++ L P F + LS + + I + M + S ++ RT
Sbjct: 6 KEEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRT 65
>1a64_A CD2; domain swapping, hinge loop, oligomer evolution; 2.00A {Rattus
norvegicus} SCOP: b.1.1.1 PDB: 1a7b_A 1cdc_B 1a6p_A
1t6w_A
Length = 97
Score = 31.9 bits (72), Expect = 0.21
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 8/76 (10%)
Query: 153 GSSVEIPCKPDGEPLPRISWSKDE--------AEFVEDRNHKIHRTGSLRLYNIGPQDSG 204
G ++ IP + + + W + F++ +I G L++ N+ DSG
Sbjct: 13 GINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKPFLKSGAFEILANGDLKIKNLTRDDSG 72
Query: 205 LYRCTASNLLGEDVAE 220
Y T + G + +
Sbjct: 73 TYNVTVYSTNGTRILD 88
Score = 31.9 bits (72), Expect = 0.21
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 8/76 (10%)
Query: 337 GSSVEIPCKPDGEPLPRISWSKDE--------AEFVEDRNHKIHRTGSLRLYNIGPQDSG 388
G ++ IP + + + W + F++ +I G L++ N+ DSG
Sbjct: 13 GINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKPFLKSGAFEILANGDLKIKNLTRDDSG 72
Query: 389 LYRCTASNLLGEDVAE 404
Y T + G + +
Sbjct: 73 TYNVTVYSTNGTRILD 88
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 32.3 bits (73), Expect = 0.26
Identities = 11/81 (13%), Positives = 26/81 (32%), Gaps = 21/81 (25%)
Query: 149 RAPAGSSVEIPC-----------------KPDGEPLPRISWSKDEAEFVEDR----NHKI 187
++ AG ++ + C + ++ SK R +
Sbjct: 21 QSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPD 80
Query: 188 HRTGSLRLYNIGPQDSGLYRC 208
++ + ++ +DSG Y C
Sbjct: 81 AGFFTVTMTDLREEDSGHYWC 101
Score = 32.3 bits (73), Expect = 0.26
Identities = 11/81 (13%), Positives = 26/81 (32%), Gaps = 21/81 (25%)
Query: 333 RAPAGSSVEIPC-----------------KPDGEPLPRISWSKDEAEFVEDR----NHKI 371
++ AG ++ + C + ++ SK R +
Sbjct: 21 QSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPD 80
Query: 372 HRTGSLRLYNIGPQDSGLYRC 392
++ + ++ +DSG Y C
Sbjct: 81 AGFFTVTMTDLREEDSGHYWC 101
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane,
immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B*
3q5t_A
Length = 240
Score = 33.4 bits (76), Expect = 0.28
Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 12/95 (12%)
Query: 6 SSTELVISGVQREHGGRYSC-----VAGNPAGVYRGDLHVT-----VNAPPIFIQRPVST 55
+E+ +S ++ E Y C L V V P + + P
Sbjct: 73 YHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKA 132
Query: 56 TYSTGSTSRITCLVEG--HPLPQMTWFHDGNSLDS 88
+ + + CL G +++W+ +G + S
Sbjct: 133 EIANKQKATLVCLARGFFPDHVELSWWVNGKEVHS 167
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens}
PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Length = 246
Score = 33.3 bits (76), Expect = 0.32
Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 15/100 (15%)
Query: 4 RRSSTE--LVISGVQREHGGRYSCVAGNPAGVYRG-----------DLHVTVNAPPIFIQ 50
S T L ++ E Y C A + V P + +
Sbjct: 71 HASLTLSTLTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVF 130
Query: 51 RPVSTTYSTGSTSRITCLVEG-HPLP-QMTWFHDGNSLDS 88
P S + + CL G +P +++W+ +G + S
Sbjct: 131 EPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHS 170
Score = 32.1 bits (73), Expect = 0.61
Identities = 31/167 (18%), Positives = 56/167 (33%), Gaps = 42/167 (25%)
Query: 141 LVVKPFDMRAPAGSSVEIPCKPDGEPLPRISW--------------------SKDEAEFV 180
++ K G+SV+I C+ + W + E
Sbjct: 11 VISKS-------GTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVE 63
Query: 181 EDR---NHKIHRTGSLRLYNIGPQDSGLYRCTAS----NLLGEDVAEGYLTVTG------ 227
+D+ NH +L + + P+DS Y C+A LTV
Sbjct: 64 KDKFLINHASLTLSTLTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVF 123
Query: 228 APPIFIQRPVSTTYSTGSTSRITCLVEG-HPLP-QMTWFHDGNSLDS 272
P + + P S + + CL G +P +++W+ +G + S
Sbjct: 124 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHS 170
Score = 29.0 bits (65), Expect = 5.8
Identities = 16/90 (17%), Positives = 24/90 (26%), Gaps = 22/90 (24%)
Query: 49 IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWF--HDGNSL------DSDDHVTYEHDG-- 98
Q P +G++ +I C M W+ SL + TYE
Sbjct: 5 SQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEK 64
Query: 99 ------------FVLVLNGVRESDAGVYNC 116
L + D+ Y C
Sbjct: 65 DKFLINHASLTLSTLTVTSAHPEDSSFYIC 94
Score = 29.0 bits (65), Expect = 5.8
Identities = 16/90 (17%), Positives = 24/90 (26%), Gaps = 22/90 (24%)
Query: 233 IQRPVSTTYSTGSTSRITCLVEGHPLPQMTWF--HDGNSL------DSDDHVTYEHDG-- 282
Q P +G++ +I C M W+ SL + TYE
Sbjct: 5 SQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEK 64
Query: 283 ------------FVLVLNGVRESDAGVYNC 300
L + D+ Y C
Sbjct: 65 DKFLINHASLTLSTLTVTSAHPEDSSFYIC 94
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B
4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B
3qjh_B 3qiw_D* 3qiu_D
Length = 245
Score = 32.7 bits (74), Expect = 0.43
Identities = 24/168 (14%), Positives = 53/168 (31%), Gaps = 41/168 (24%)
Query: 139 PR-LVVKPFDMRAPAGSSVEIPCKPD-------------GEPLPRISWS-----KDEAEF 179
P ++ G V + C P G+ + + ++++
Sbjct: 9 PSHQIIDM-------GQMVTLNCDPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKL 61
Query: 180 VEDR---NHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY----------LTVT 226
+D+ +L++ +DS +Y C +S L
Sbjct: 62 FKDQFSVERPDGSYFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNV 121
Query: 227 GAPPIFIQRPVSTTYSTGSTSRITCLVEG-HPLP-QMTWFHDGNSLDS 272
P + + P S + + CL G +P +++W+ +G + S
Sbjct: 122 FPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHS 169
Score = 31.1 bits (70), Expect = 1.2
Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 13/96 (13%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGVYR-----------GDLHVTVNAPPIFIQRPVS 54
S L I E Y C + + V P + + P
Sbjct: 74 SYFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSE 133
Query: 55 TTYSTGSTSRITCLVEG-HPLP-QMTWFHDGNSLDS 88
S + + CL G +P +++W+ +G + S
Sbjct: 134 AEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHS 169
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor,
immune system/receptor/complex, TCR, MHC,
immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E
2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D*
3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E
3kxf_E 2cde_B ...
Length = 252
Score = 32.7 bits (74), Expect = 0.45
Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 12/95 (12%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVT----------VNAPPIFIQRPVST 55
S L ++ Q+ Y C + + + + T V P + + P
Sbjct: 74 ESFPLTVTSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEA 133
Query: 56 TYSTGSTSRITCLVEG-HPLP-QMTWFHDGNSLDS 88
S + + CL G +P +++W+ +G + S
Sbjct: 134 EISHTQKATLVCLATGFYPDHVELSWWVNGKEVHS 168
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 152
Score = 31.9 bits (73), Expect = 0.51
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 539 LRGFITSPAKRKRPTENLNKELTDKLFTTFHAVSLDL---AAMNIQRGRDHGIPEYNAWR 595
L + +P + K P LN++ K VS + +++R + I + R
Sbjct: 67 LMAVVHNPRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKK--IRNHRGLR 124
Query: 596 EYCGLP 601
Y G+
Sbjct: 125 HYWGVR 130
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A;
translation, ribosome, ribosomal, ribosomal R ribosomal
protein, eukaryotic ribosome, RNA-protein C; 3.00A
{Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L
3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Length = 146
Score = 31.5 bits (72), Expect = 0.58
Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 539 LRGFITSPAKRKRPTENLNKELTDKLFTTFHAVSLDL---AAMNIQRGRDHGIPEYNAWR 595
+ + +P K P LN++ +H ++ ++ +++R + I + R
Sbjct: 69 IVQIMQNPTHYKIPAWFLNRQNDITDGKDYHTLANNVESKLRDDLERLKK--IRAHRGIR 126
Query: 596 EYCGLP 601
+ GL
Sbjct: 127 HFWGLR 132
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D
3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Length = 206
Score = 32.3 bits (73), Expect = 0.58
Identities = 26/132 (19%), Positives = 44/132 (33%), Gaps = 14/132 (10%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDL------HVTVNAPPIFIQRPVS 54
+DR+SST L++ Y C+ G G L +TV+ IQ P
Sbjct: 64 AEDRKSST-LILHRATLRDAAVYYCILPLAGGTSYGKLTFGQGTILTVHPN---IQNPDP 119
Query: 55 TTY---STGSTSRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESD 110
Y + S+ + CL ++ D + +D V + V S+
Sbjct: 120 AVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKTVLDMRSMDFKSNSAVAWSN 179
Query: 111 AGVYNCVAQNSE 122
+ C +
Sbjct: 180 KSDFACANAFNN 191
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_M
Length = 155
Score = 31.5 bits (72), Expect = 0.70
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 5/66 (7%)
Query: 539 LRGFITSPAKRKRPTENLNKELTDKLFTTFHAVSLDL---AAMNIQRGRDHGIPEYNAWR 595
+ I P PT LN+ K + S L +++R + I + R
Sbjct: 69 ITDLIADPEAHGIPTWLLNRINDFKDGKNYQMASNTLDTKMREDLERLKK--IKSHRGLR 126
Query: 596 EYCGLP 601
+ GL
Sbjct: 127 HFWGLK 132
>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the
antigen combining site superantigen FAB VH3 specificity;
2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B
1adq_H
Length = 223
Score = 31.7 bits (73), Expect = 0.77
Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 20/97 (20%)
Query: 192 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGY------LTV----TGAPPIFIQRPVSTTY 241
SLR +D+ +Y C Y +TV AP +F +
Sbjct: 85 SLR-----AEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENS- 138
Query: 242 STGSTSRITCLVEGHPLPQ---MTWFHDGNSLDSDDH 275
+ ST + CL + LP +W + NS S
Sbjct: 139 NPSSTVAVGCLAQDF-LPDSITFSWKYKNNSDISSTR 174
Score = 28.6 bits (65), Expect = 8.2
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 10/60 (16%)
Query: 40 VTV-----NAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQ---MTWFHDGNSLDSDDH 91
VTV +AP +F + + ST + CL + LP +W + NS S
Sbjct: 117 VTVSSGSASAPTLFPLVSCENS-NPSSTVAVGCLAQDF-LPDSITFSWKYKNNSDISSTR 174
>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like
receptor; IG-like domain, domain swapping, collagen
receptor, structural genomics; 1.76A {Mus musculus}
Length = 102
Score = 30.4 bits (69), Expect = 0.77
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 5 RSSTELVISGVQREHGGRYSCVAGNPAG 32
++ E I V G YSC+
Sbjct: 60 KTEDEFEIGPVNETITGHYSCIYSKGIT 87
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A
{Mus musculus}
Length = 270
Score = 31.9 bits (72), Expect = 0.80
Identities = 15/96 (15%), Positives = 27/96 (28%), Gaps = 13/96 (13%)
Query: 6 SSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHV-----------TVNAPPIFIQRPVS 54
S L I + Y C + V P + + P
Sbjct: 99 SPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSE 158
Query: 55 TTYSTGSTSRITCLVEGH--PLPQMTWFHDGNSLDS 88
S + + CL G +++W+ +G + S
Sbjct: 159 AEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHS 194
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.80
Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 26/46 (56%)
Query: 412 ENSVEP-APHTSREPSASKPSVADDTIHMAVKLASREVDAAVNATI 456
+ S++ A SA P++A + AT+
Sbjct: 26 QASLKLYADD-----SA--PALA------------------IKATM 46
>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like
receptor; IG-like domain, cell membrane, glycoprotein;
1.80A {Homo sapiens} PDB: 3rp1_A
Length = 106
Score = 30.4 bits (69), Expect = 0.81
Identities = 7/31 (22%), Positives = 9/31 (29%)
Query: 2 DDRRSSTELVISGVQREHGGRYSCVAGNPAG 32
S I V + G Y C+ P
Sbjct: 59 SPSESEARFRIDSVSEGNAGPYRCIYYKPPK 89
Score = 30.1 bits (68), Expect = 1.1
Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 8/76 (10%)
Query: 58 STGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEHDGFV----LVLNGVRESDAG 112
GS C G Q + S +D + ++ V E +AG
Sbjct: 21 PLGSHVTFVC--RGPVGVQTFRLERESRSTYNDTEDVSQASPSESEARFRIDSVSEGNAG 78
Query: 113 VYNCVAQNSEG-SAES 127
Y C+ S +S
Sbjct: 79 PYRCIYYKPPKWSEQS 94
Score = 30.1 bits (68), Expect = 1.1
Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 8/76 (10%)
Query: 242 STGSTSRITCLVEGHPLPQMTWFH-DGNSLDSDDHVTYEHDGFV----LVLNGVRESDAG 296
GS C G Q + S +D + ++ V E +AG
Sbjct: 21 PLGSHVTFVC--RGPVGVQTFRLERESRSTYNDTEDVSQASPSESEARFRIDSVSEGNAG 78
Query: 297 VYNCVAQNSEG-SAES 311
Y C+ S +S
Sbjct: 79 PYRCIYYKPPKWSEQS 94
>1khd_A Anthranilate phosphoribosyltransferase; type 3 PRT fold, nucleotide
binding fold; 1.86A {Pectobacterium carotovorum} SCOP:
a.46.2.1 c.27.1.1 PDB: 1kgz_A
Length = 345
Score = 32.1 bits (74), Expect = 0.82
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 191 GSLRLYNIGPQDSGLYRCTASNLLGEDVAE 220
G + Y + PQD GL + + L G E
Sbjct: 252 GEIESYQLSPQDFGLQSYSLNALQGGTPEE 281
Score = 32.1 bits (74), Expect = 0.82
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 375 GSLRLYNIGPQDSGLYRCTASNLLGEDVAE 404
G + Y + PQD GL + + L G E
Sbjct: 252 GEIESYQLSPQDFGLQSYSLNALQGGTPEE 281
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune
system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L
2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L*
1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L*
1mfb_L* ...
Length = 212
Score = 31.5 bits (72), Expect = 0.96
Identities = 29/144 (20%), Positives = 46/144 (31%), Gaps = 27/144 (18%)
Query: 5 RSSTE--LVISGVQREHGGRYSCVAGNPAG-VYRGDLHVTVN-----APPIFIQRPVSTT 56
+ L I+G Q E Y C + V+ G +TV +P + + P S
Sbjct: 68 LIGDKAALTITGAQTEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEE 127
Query: 57 YSTGSTSRITCLVEGHPLPQ---MTWFHDGN-----------SLDSDDHVTYEHDGFVLV 102
ST + + C + P + W DG S S++ Y L
Sbjct: 128 LSTAKAT-LVCTITDF-YPGVVTVDWKVDGTPVTAGMETTQPSKQSNN--KYMAS-SYLT 182
Query: 103 LNGVRESDAGVYNCVAQNSEGSAE 126
L Y+C + S+
Sbjct: 183 LTARAWERHSSYSCQVTHEGHSSN 206
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody,
domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Length = 256
Score = 31.6 bits (72), Expect = 1.0
Identities = 44/215 (20%), Positives = 72/215 (33%), Gaps = 68/215 (31%)
Query: 142 VVKPFDMRAPAGSSVEIPCKPDG-------------------EPLPRISWS--------- 173
+VKP G+SV++ CK G E + RI +
Sbjct: 11 LVKP-------GASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEK 63
Query: 174 -KDEAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY------LTVT 226
K +A D K T ++L ++ +DS +Y C A Y +TV+
Sbjct: 64 FKSKATLTVD---KPSSTAYMQLSSLTSEDSAVYYC-ARYDYYGSSYFDYWGQGTTVTVS 119
Query: 227 GAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQ-----MTWF------------HDGNS 269
+ Q P+S S G + I+C + + W+ + ++
Sbjct: 120 SDIELT-QTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSN 178
Query: 270 LDSDDHVTYEHDG----FVLVLNGVRESDAGVYNC 300
S + G F L ++ V D GVY C
Sbjct: 179 RFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYC 213
Score = 31.2 bits (71), Expect = 1.3
Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 27/143 (18%)
Query: 1 TDDRRSSTE-LVISGVQREHGGRYSCVAGNPAGVYRGDL-----HVTVNAPPIFIQRPVS 54
T D+ SST + +S + E Y C + G D VTV++ Q P+S
Sbjct: 71 TVDKPSSTAYMQLSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLS 130
Query: 55 TTYSTGSTSRITCLVEGHPLPQ-----MTWF------------HDGNSLDSDDHVTYEHD 97
S G + I+C + + W+ + ++ S +
Sbjct: 131 LPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGS 190
Query: 98 G----FVLVLNGVRESDAGVYNC 116
G F L ++ V D GVY C
Sbjct: 191 GSGTDFTLKISRVEAEDLGVYYC 213
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein,
GPI-anchor, immunoglobulin DOMA lipoprotein, membrane;
1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Length = 111
Score = 30.3 bits (68), Expect = 1.0
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 185 HKIHRTGSLRLYNIGPQDSGLYRC-TASNLLGEDVAEGYLTV 225
I+ SL + NI D+G Y + L + A G V
Sbjct: 66 EIIYPNASLLIQNIIQNDAGFYTLHVIKSDLVNEEATGQFRV 107
Score = 30.3 bits (68), Expect = 1.0
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 369 HKIHRTGSLRLYNIGPQDSGLYRC-TASNLLGEDVAEGYLTV 409
I+ SL + NI D+G Y + L + A G V
Sbjct: 66 EIIYPNASLLIQNIIQNDAGFYTLHVIKSDLVNEEATGQFRV 107
>1vqu_A Anthranilate phosphoribosyltransferase 2; 17130499, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative, PSI; 1.85A {Nostoc SP}
Length = 374
Score = 31.8 bits (73), Expect = 1.1
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 189 RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE 220
G L+L I PQ+ G+ L G DV E
Sbjct: 274 SDGELQLTTINPQEVGVTPAPIGALRGGDVQE 305
Score = 31.8 bits (73), Expect = 1.1
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 373 RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE 404
G L+L I PQ+ G+ L G DV E
Sbjct: 274 SDGELQLTTINPQEVGVTPAPIGALRGGDVQE 305
>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human,
immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H
Length = 232
Score = 31.3 bits (72), Expect = 1.1
Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 14/99 (14%)
Query: 190 TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY------LTV----TGAPPIFIQRPVST 239
SL+L ++ D+ +Y C Y +TV AP +F
Sbjct: 77 QFSLKLSSVTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCEN 136
Query: 240 TYSTGSTSRITCLVEGHPLPQ---MTWFHDGNSLDSDDH 275
+ S S+ + CL + LP +W + NS S
Sbjct: 137 SPSDTSSVAVGCLAQDF-LPDSITFSWKYKNNSDISSTR 174
Score = 28.3 bits (64), Expect = 9.7
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 9/60 (15%)
Query: 40 VTV-----NAPPIFIQRPVSTTYSTGSTSRITCLVEGHPLPQ---MTWFHDGNSLDSDDH 91
VTV +AP +F + S S+ + CL + LP +W + NS S
Sbjct: 116 VTVSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDF-LPDSITFSWKYKNNSDISSTR 174
>1o17_A Anthranilate PRT, anthranilate phosphoribosyltransferase, TRPD;
nucleoside-phosphorylases; 2.05A {Sulfolobus
solfataricus} SCOP: a.46.2.1 c.27.1.1 PDB: 1gxb_A
1zxy_A* 1zyk_A* 2gvq_A* 3gbr_A*
Length = 345
Score = 31.4 bits (72), Expect = 1.3
Identities = 3/32 (9%), Positives = 8/32 (25%)
Query: 189 RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE 220
+ + D G+ L+ +
Sbjct: 237 SKRGIEEVKLNVTDFGISPIPIEKLIVNSAED 268
Score = 31.4 bits (72), Expect = 1.3
Identities = 3/32 (9%), Positives = 8/32 (25%)
Query: 373 RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE 404
+ + D G+ L+ +
Sbjct: 237 SKRGIEEVKLNVTDFGISPIPIEKLIVNSAED 268
>3qr9_A Anthranilate phosphoribosyltransferase; anthranilic acids, M
tryptophan, magnesium binding, phosphoribosyl
pyrophosphate transferase; 1.87A {Mycobacterium
tuberculosis} PDB: 1zvw_A* 2bpq_A
Length = 377
Score = 31.4 bits (72), Expect = 1.3
Identities = 8/32 (25%), Positives = 9/32 (28%)
Query: 189 RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE 220
GS+ P G R L G D
Sbjct: 264 AAGSVDKLTFDPAGFGFARAQLDQLAGGDAQA 295
Score = 31.4 bits (72), Expect = 1.3
Identities = 8/32 (25%), Positives = 9/32 (28%)
Query: 373 RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAE 404
GS+ P G R L G D
Sbjct: 264 AAGSVDKLTFDPAGFGFARAQLDQLAGGDAQA 295
>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein
complex, enzyme- inhibitor complex, disease mutation,
glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E
Length = 257
Score = 31.4 bits (72), Expect = 1.3
Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 29/104 (27%)
Query: 192 SLRLYNIGPQDSGLYRCTASNLLGEDVAEGY-------------LTV----TGAPPIFIQ 234
SLR +D+ +Y C L +TV T P +F
Sbjct: 85 SLR-----AEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPL 139
Query: 235 RPVSTTYSTGSTSRITCLVEGHPLPQ---MTWFHDGNSLDSDDH 275
P S + ++G T+ + CLV+ P+ ++W + +L S H
Sbjct: 140 APSSKS-TSGGTAALGCLVKD-YFPEPVTVSW--NSGALTSGVH 179
>1sgl_A Trichomaglin; S-like ribonuclease, X-RAY sequence, MASS SPEC
analysis, hydrolase; 2.20A {Trichosanthes lepiniana}
SCOP: d.124.1.1
Length = 209
Score = 31.1 bits (70), Expect = 1.3
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 6/43 (13%)
Query: 836 PSTFKPAQLTQIKQASLA------RVICDSGDRLTEVRVCFSP 872
S K L I A + ++ CD + ++ +CF
Sbjct: 143 ASNSKMYDLKDIVVAVESAVGARPKLRCDEEGLVQKLSLCFDK 185
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle,
oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus}
SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*
Length = 661
Score = 31.8 bits (72), Expect = 1.4
Identities = 29/199 (14%), Positives = 57/199 (28%), Gaps = 25/199 (12%)
Query: 468 QDHGSLMKLLRFPDESARTVVRAADVYERTLSHIKKHIQAGVKMNLSEDLSLGKAFFSPW 527
G + A +E + + A M + + + GK
Sbjct: 394 MACGGHGYSHSSGIPNIYVTFTPACTFEGE-NTVMMLQTARFLMKIYDQVRSGKLVGGMV 452
Query: 528 RLVDEGGVDPLLRGFITSPAKRKRPTENLNKELTDKLFTTFHAVSLDLAAMNIQRGRDHG 587
+++ + A + + E + + A +++AA N+Q H
Sbjct: 453 SYLNDLPSQRIQPQQ---VAVWPTMVDINSLEGLTEAYKLRAARLVEIAAKNLQTHVSHR 509
Query: 588 IPEYNAW-----------REYCGLPRANTFEDLAREITD---RRVRDKLQRLYG------ 627
+ AW +C F D +I D + V L LY
Sbjct: 510 KSKEVAWNLTSVDLVRASEAHCHYVVVKVFSDKLPKIQDKAVQAVLRNLCLLYSLYGISQ 569
Query: 628 HPG-FSYHDVLSPRQIELI 645
G F +++ Q+ +
Sbjct: 570 KGGDFLEGSIITGAQLSQV 588
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 29.5 bits (66), Expect = 1.4
Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 21/105 (20%)
Query: 145 PFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAE----FVEDRNHKIHRTGSLRLY--- 196
P ++AP GSS+ + C + + W + E V + G
Sbjct: 4 PEVLQAPVGSSILVQCHYRLQDVKAQKVWCRFLPEGCQPLVSSAVDRRAPAGRRTFLTDL 63
Query: 197 ----------NIGPQDSGLYRCTASNLLGEDVAEG-YLTVTGAPP 230
+ +D+G Y C G + L + PP
Sbjct: 64 GGGLLQVEMVTLQEEDAGEYGCMVDGARGPQILHRVSLNIL--PP 106
Score = 28.3 bits (63), Expect = 3.7
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 99 FVLVLNGVRESDAGVYNCVAQNSEGSAESVAM 130
+ + ++E DAG Y C+ + G +
Sbjct: 68 LQVEMVTLQEEDAGEYGCMVDGARGPQILHRV 99
Score = 28.3 bits (63), Expect = 3.7
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 283 FVLVLNGVRESDAGVYNCVAQNSEGSAESVAM 314
+ + ++E DAG Y C+ + G +
Sbjct: 68 LQVEMVTLQEEDAGEYGCMVDGARGPQILHRV 99
Score = 28.3 bits (63), Expect = 4.2
Identities = 17/101 (16%), Positives = 30/101 (29%), Gaps = 19/101 (18%)
Query: 329 PFDMRAPAGSSVEIPCK-PDGEPLPRISWSKDEAE----FVEDRNHKIHRTGSLRLY--- 380
P ++AP GSS+ + C + + W + E V + G
Sbjct: 4 PEVLQAPVGSSILVQCHYRLQDVKAQKVWCRFLPEGCQPLVSSAVDRRAPAGRRTFLTDL 63
Query: 381 ----------NIGPQDSGLYRCTASNLLGEDVAEG-YLTVT 410
+ +D+G Y C G + L +
Sbjct: 64 GGGLLQVEMVTLQEEDAGEYGCMVDGARGPQILHRVSLNIL 104
>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like
receptor; IG-like domain, extra celluar domain, domain
swappin nysgrc, structural genomics; 1.90A {Mus
musculus}
Length = 118
Score = 29.7 bits (67), Expect = 1.7
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 5 RSSTELVISGVQREHGGRYSCVAGNPAG 32
++ E I V G YSC+
Sbjct: 60 KTEDEFEIGPVNETITGHYSCIYSKGIT 87
>3vbh_C EV71, genome polyprotein, vapsid protein VP3; hand-foot-and-mouth
disease, enterovirus uncoating, P factor,
adaptor-sensor; HET: SPH; 2.30A {Human enterovirus 71}
PDB: 3vbf_C* 3vbs_C* 3vbo_C 3vbr_C 3vbu_C 4aed_C* 4agy_C
4agx_C
Length = 242
Score = 30.8 bits (69), Expect = 1.8
Identities = 11/69 (15%), Positives = 20/69 (28%), Gaps = 6/69 (8%)
Query: 189 RTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTSR 248
S I + YR A + + + G ++ I+ Q +T+
Sbjct: 160 GLQSSVTLVIPWISNTHYRAHARDGVFDYYTTGLVS------IWYQTNYVVPIGAPNTAY 213
Query: 249 ITCLVEGHP 257
I L
Sbjct: 214 IIALAAAQK 222
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS
domain, structural genomics, NPPSFA; 2.00A {Aeropyrum
pernix} PDB: 2cy1_A
Length = 144
Score = 30.0 bits (68), Expect = 2.0
Identities = 9/68 (13%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
Query: 117 VAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRA---PAGSSVEIPCKPDGEPLPRISWS 173
V + G ++ +R +V + G +++ + G+ + + +S
Sbjct: 17 VFHSITGVTAYRCIVDEENNRL-IFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYS 75
Query: 174 KDEAEFVE 181
D V+
Sbjct: 76 SDLERIVK 83
Score = 30.0 bits (68), Expect = 2.0
Identities = 9/68 (13%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
Query: 301 VAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRA---PAGSSVEIPCKPDGEPLPRISWS 357
V + G ++ +R +V + G +++ + G+ + + +S
Sbjct: 17 VFHSITGVTAYRCIVDEENNRL-IFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYS 75
Query: 358 KDEAEFVE 365
D V+
Sbjct: 76 SDLERIVK 83
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold,
diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Length = 238
Score = 30.5 bits (69), Expect = 2.0
Identities = 35/223 (15%), Positives = 53/223 (23%), Gaps = 65/223 (29%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPD-------------GEPLPRISWSKDEAEFVEDRNH 185
V G V + C G L I +S +
Sbjct: 8 RNKVAVT-------GGKVTLSCNQTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGD-I 59
Query: 186 KIHRTGS--------LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFI---- 233
S L L P + +Y C AS LG+ + +
Sbjct: 60 PDGYKASRPSQENFSLILELATPSQTSVYFC-ASGDLGQTNERLFFGHGTKLSVLGSADD 118
Query: 234 -------------QRPVSTTYSTGSTSRITCLVEGHPLPQMTWF------------HDGN 268
Q P S T G T+ + C E W+ +
Sbjct: 119 AKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILS 178
Query: 269 SLDS--DDHVTYEHDG----FVLVLNGVRESDAGVYNCVAQNS 305
D D T + L + + D+ Y C A ++
Sbjct: 179 VSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDT 221
Score = 29.0 bits (65), Expect = 6.9
Identities = 21/156 (13%), Positives = 39/156 (25%), Gaps = 35/156 (22%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAGVYRGDLHVTVNAPPIFI----------- 49
+ + + L++ Y C +G+ +
Sbjct: 66 SRPSQENFSLILELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAK 125
Query: 50 ------QRPVSTTYSTGSTSRITCLVEGHPLPQMTWF------------HDGNSLDS--D 89
Q P S T G T+ + C E W+ + D D
Sbjct: 126 KDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKED 185
Query: 90 DHVTYEHDG----FVLVLNGVRESDAGVYNCVAQNS 121
T + L + + D+ Y C A ++
Sbjct: 186 GRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDT 221
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune
system, antibody, ENA11His antibody, immunoglobulin
domain; 2.75A {Mus musculus}
Length = 254
Score = 30.5 bits (69), Expect = 2.1
Identities = 29/135 (21%), Positives = 45/135 (33%), Gaps = 18/135 (13%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYRG---DLHV--TVNAPPIFIQRPVSTTYSTGSTSR 64
L IS V+ E G Y CV G+ G L + AP + I P S+ T +
Sbjct: 115 LKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPP-SSEQLTSGGAS 173
Query: 65 ITCLVEGHPL--PQMTWFHDGNSLDSDDHVTY----EHDGF-----VLVLNGVRESDAGV 113
+ C + + W DG+ + ++ D L L
Sbjct: 174 VVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNS 233
Query: 114 YNCVAQNSEGSAESV 128
Y C A + + S +
Sbjct: 234 YTCEATH-KTSTSPI 247
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG,
immune system; 2.94A {Cricetulus migratorius} PDB:
3mj9_L*
Length = 213
Score = 30.0 bits (68), Expect = 2.4
Identities = 27/130 (20%), Positives = 41/130 (31%), Gaps = 20/130 (15%)
Query: 10 LVISGVQREHGGRYSCVA---GNPAGVYRGDLHVTVN-----APPIFIQRPVSTTYSTGS 61
L IS Q Y C + N A V+ VTV AP + + P S T
Sbjct: 72 LTISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQ 131
Query: 62 TSRITCLVEG--HPLPQMTWFHDG--------NSLDSDDHVTYEHDGFVLVLNGVRESDA 111
+ + C++ G +TW DG + S Y + L +
Sbjct: 132 AT-LVCMINGFYPADVAVTWEADGTPITQGVKTTQPSKSDSKYMATSY-LTMTADAWKSR 189
Query: 112 GVYNCVAQNS 121
+ C +
Sbjct: 190 NTFICKVTHG 199
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain
FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus}
SCOP: b.1.1.1 b.1.1.1
Length = 282
Score = 30.4 bits (69), Expect = 2.6
Identities = 27/145 (18%), Positives = 44/145 (30%), Gaps = 34/145 (23%)
Query: 190 TGSLRLYNIGPQDSGLYRCTASNLLGEDV-------------------AEGYLTVTGAPP 230
T L+L ++ +D+ +Y C G G G+
Sbjct: 104 TAYLQLSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSEN 163
Query: 231 IFIQRPVSTTYSTGSTSRITCLVEG-----HPLPQM------TWFHDGNSLDSDDHVTYE 279
+ Q P + S G ITC H Q W + ++L S +
Sbjct: 164 VLTQSPAIMSASPGEKVTITCSASSSVSYMHWFQQKPGTSPKLWIYSTSNLASGVPARFS 223
Query: 280 HDG----FVLVLNGVRESDAGVYNC 300
G + L ++ + DA Y C
Sbjct: 224 GSGSGTSYSLTISRMEAEDAATYYC 248
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 29.0 bits (65), Expect = 2.8
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 99 FVLVLNGVRESDAGVYNCVAQNS 121
+ + ++ D+G+Y CV
Sbjct: 81 LRVRMVNLQVEDSGLYQCVIYQP 103
Score = 29.0 bits (65), Expect = 2.8
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 283 FVLVLNGVRESDAGVYNCVAQNS 305
+ + ++ D+G+Y CV
Sbjct: 81 LRVRMVNLQVEDSGLYQCVIYQP 103
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 29.0 bits (65), Expect = 3.2
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 7/47 (14%)
Query: 99 FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKP 145
+ + ++ D+G+Y CV + RI RLVV
Sbjct: 76 LRVRMVNLQVEDSGLYQCVIYQP-PKEPHMLFDRI------RLVVTK 115
Score = 29.0 bits (65), Expect = 3.2
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 7/47 (14%)
Query: 283 FVLVLNGVRESDAGVYNCVAQNSEGSAESVAMIRINGHRAPRLVVKP 329
+ + ++ D+G+Y CV + RI RLVV
Sbjct: 76 LRVRMVNLQVEDSGLYQCVIYQP-PKEPHMLFDRI------RLVVTK 115
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus,
PP65, T cell receptor (TCR), immune response, public
response; 2.80A {Homo sapiens}
Length = 199
Score = 29.5 bits (66), Expect = 3.5
Identities = 30/184 (16%), Positives = 51/184 (27%), Gaps = 24/184 (13%)
Query: 145 PFDMRAPAGSSVEIPC---------------KPDGEPLPRISWSKDEAEFVEDR----NH 185
P + G S C + P + + E + R +
Sbjct: 7 PQSLHVQEGDSTNFTCSFPSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKGRISATLN 66
Query: 186 KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG-YLTVTGAPPIFIQRP-VSTTYST 243
L + P+DS Y C + G LTV P I P V +
Sbjct: 67 TKEGYSYLYIKGSQPEDSATYLCARNTGNQFYFGTGTSLTV--IPNIQNPDPAVYQLRDS 124
Query: 244 GSTSRITCLVEG-HPLPQMTWFHDGNSLDSDDHVTYEHDGFVLVLNGVRESDAGVYNCVA 302
S+ + CL ++ D ++ +D V + V S+ + C
Sbjct: 125 KSSDKSVCLFTDFDSQTNVSQSKDSDAYITDKTVLDMRSMDFKSNSAVAWSNKSDFACAN 184
Query: 303 QNSE 306
+
Sbjct: 185 AFNN 188
Score = 28.7 bits (64), Expect = 7.3
Identities = 23/125 (18%), Positives = 37/125 (29%), Gaps = 21/125 (16%)
Query: 329 PFDMRAPAGSSVEIPC---------------KPDGEPLPRISWSKDEAEFVEDR----NH 369
P + G S C + P + + E + R +
Sbjct: 7 PQSLHVQEGDSTNFTCSFPSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKGRISATLN 66
Query: 370 KIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEG-YLTVT-GENSVEPAPHTSREPSA 427
L + P+DS Y C + G LTV + +PA + R+ +
Sbjct: 67 TKEGYSYLYIKGSQPEDSATYLCARNTGNQFYFGTGTSLTVIPNIQNPDPAVYQLRDSKS 126
Query: 428 SKPSV 432
S SV
Sbjct: 127 SDKSV 131
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded
beta helix, alpha-keto dependent non-heme iron
oxygenase; 1.40A {Bacillus anthracis str}
Length = 216
Score = 29.3 bits (66), Expect = 4.5
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
Query: 631 FSYHDVLSPRQIELIANLS-GCMEHQRTANCSDLCFHTKYRTIDGT 675
+VLS + + + LS + + + D RT G
Sbjct: 42 VVLGNVLSDEECDELIELSKSKLARSKVGSSRD---VNDIRTSSGA 84
>2c9a_A Receptor-type tyrosine-protein phosphatase MU; glycoprotein,
hydrolase, immunoglobulin domain; HET: NAG MAN NDG FUL;
2.7A {Homo sapiens} SCOP: b.1.1.4 b.29.1.25
Length = 259
Score = 29.5 bits (65), Expect = 4.6
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 1 TDDRRSSTELVISGVQREHGGRYSCVAGNPAGV 33
T RR + + G+Y C+ GV
Sbjct: 216 TSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGV 248
Score = 28.3 bits (62), Expect = 9.8
Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 5/82 (6%)
Query: 51 RPVSTTYSTGSTSRITCLVEGH-PLPQMTWFHDGNSLDSD--DHVTYEHDGFV--LVLNG 105
R + + G + C G W + D+ + F+ +
Sbjct: 170 RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVN 229
Query: 106 VRESDAGVYNCVAQNSEGSAES 127
+ DAG Y C+ + G S
Sbjct: 230 TTKRDAGKYRCMIRTEGGVGIS 251
Score = 28.3 bits (62), Expect = 9.8
Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 5/82 (6%)
Query: 235 RPVSTTYSTGSTSRITCLVEGH-PLPQMTWFHDGNSLDSD--DHVTYEHDGFV--LVLNG 289
R + + G + C G W + D+ + F+ +
Sbjct: 170 RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVN 229
Query: 290 VRESDAGVYNCVAQNSEGSAES 311
+ DAG Y C+ + G S
Sbjct: 230 TTKRDAGKYRCMIRTEGGVGIS 251
>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein,
T cell receptor delta, immune system; HET: NAG MAN FUC;
3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 230
Score = 29.5 bits (67), Expect = 4.6
Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 19/103 (18%)
Query: 190 TGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGY------LTVTGA---------PPIFIQ 234
T L +Y++ +D +Y C+ G L V + P I
Sbjct: 78 TSILTIYSLEEEDEAIYYCSYGE--GSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIF 135
Query: 235 RPVSTTYSTGSTSRITCLVEG-HPLP-QMTWFHDGNSLDSDDH 275
P + T CL+E P ++ W + D
Sbjct: 136 LPSVAETNLHKTGTYLCLLEAFFPDVIRVYWKEKDGNTILDSQ 178
>1flt_X FLT-1, VGR1, FMS-like tyrosine kinase 1; complex (growth
factor-transferase), FLT-1 receptor, cystine
glycoprotein; 1.70A {Homo sapiens} SCOP: b.1.1.4 PDB:
1qsv_A 1qsz_A 1qty_X 2xac_C 1rv6_X*
Length = 95
Score = 27.8 bits (61), Expect = 5.0
Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 1/74 (1%)
Query: 139 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED-RNHKIHRTGSLRLYN 197
P + G + IPC+ + + D + + N
Sbjct: 6 EMYSEIPEIIHMTEGRELVIPCRVTSPNITVTLKKFPLDTLIPDGKRIIWDSRKGFIISN 65
Query: 198 IGPQDSGLYRCTAS 211
++ GL C A+
Sbjct: 66 ATYKEIGLLTCEAT 79
Score = 27.8 bits (61), Expect = 5.0
Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 1/74 (1%)
Query: 323 PRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSKDEAEFVED-RNHKIHRTGSLRLYN 381
P + G + IPC+ + + D + + N
Sbjct: 6 EMYSEIPEIIHMTEGRELVIPCRVTSPNITVTLKKFPLDTLIPDGKRIIWDSRKGFIISN 65
Query: 382 IGPQDSGLYRCTAS 395
++ GL C A+
Sbjct: 66 ATYKEIGLLTCEAT 79
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune
system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
b.1.1.2
Length = 344
Score = 29.4 bits (66), Expect = 5.8
Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 3/82 (3%)
Query: 188 HRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTS 247
H+ + ++ S T G G P ++ P S T +
Sbjct: 202 HKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPREPQVYT-LPPSRDELTKNQV 260
Query: 248 RITCLVEG--HPLPQMTWFHDG 267
+TCLV+G + W +G
Sbjct: 261 SLTCLVKGFYPSDIAVEWESNG 282
Score = 29.0 bits (65), Expect = 8.0
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 45 PPIFIQRPVSTTYSTGSTSRITCLVEG--HPLPQMTWFHDG 83
P P S T + +TCLV+G + W +G
Sbjct: 242 EPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNG 282
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 28.9 bits (64), Expect = 6.1
Identities = 16/118 (13%), Positives = 36/118 (30%), Gaps = 5/118 (4%)
Query: 99 FVLVLNGVRESDAGVYNCVAQNSEGSAESV----AMIRINGHRAPRLVVKPFDMRAPAGS 154
L + + SD+ Y CV + + + + +R S
Sbjct: 75 SSLHITASQLSDSASYICVVSDRGSTLGRLYFGRGTQLTVWPDIQNPDPAVYQLRDSKSS 134
Query: 155 SVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQ-DSGLYRCTAS 211
+ D + +S SKD ++ D+ R+ + + + + C +
Sbjct: 135 DKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFACANA 192
Score = 28.9 bits (64), Expect = 6.1
Identities = 16/118 (13%), Positives = 36/118 (30%), Gaps = 5/118 (4%)
Query: 283 FVLVLNGVRESDAGVYNCVAQNSEGSAESV----AMIRINGHRAPRLVVKPFDMRAPAGS 338
L + + SD+ Y CV + + + + +R S
Sbjct: 75 SSLHITASQLSDSASYICVVSDRGSTLGRLYFGRGTQLTVWPDIQNPDPAVYQLRDSKSS 134
Query: 339 SVEIPCKPDGEPLPRISWSKDEAEFVEDRNHKIHRTGSLRLYNIGPQ-DSGLYRCTAS 395
+ D + +S SKD ++ D+ R+ + + + + C +
Sbjct: 135 DKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFACANA 192
>1jy5_A CALSEPRRP; RNAse, alpha-beta protein, hydrolase; 2.05A {Calystegia
sepium} SCOP: d.124.1.1
Length = 212
Score = 28.9 bits (64), Expect = 6.5
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 7/43 (16%)
Query: 836 PSTFKPAQLTQIKQA------SLARVICDSGDRLTEVRVCFSP 872
PS ++ I A V C D + +V++CF
Sbjct: 143 PSNTAEYKVEGIMSAIQSALRVTPVVKC-KSDAVEQVQICFDK 184
>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI,
structure initiative, midwest center for structural
genomic oxidoreductase; 1.90A {Neisseria meningitidis}
SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*
Length = 263
Score = 29.0 bits (66), Expect = 7.5
Identities = 8/52 (15%), Positives = 15/52 (28%), Gaps = 14/52 (26%)
Query: 505 IQAGVKMNLSEDLS--------LGKAFFSPWRLVDEGGVDP-LLRGFITSPA 547
A ++ + G L ++ G D L+ +TS
Sbjct: 179 QNAAIRQGFDMAEARALSLATFKGAV-----ALAEQTGEDFEKLQKNVTSKG 225
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens}
PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A
3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L
3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Length = 216
Score = 28.4 bits (64), Expect = 8.0
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Query: 10 LVISGVQREHGGRYSCVAGNPAGVYR--GDLHVTVN----APPIFIQRPVSTTYSTGSTS 63
L I+G+Q Y C + + G + + AP +FI P +G+ S
Sbjct: 74 LGITGLQTGDEADYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTAS 133
Query: 64 RITCLVEGH 72
+ CL+
Sbjct: 134 -VVCLLNNF 141
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system;
1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N
Length = 121
Score = 27.7 bits (62), Expect = 8.1
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 14/67 (20%)
Query: 363 FVEDRNHKIHRTGSLRLYNIGPQDSGLYRCTASNLLGEDVAEGYL---------TVTGEN 413
+VE N + ++ SLR+ ++ +DSG YRC + G A VT
Sbjct: 55 YVETVN-RGSKSFSLRINDLTVKDSGTYRCKPESRYGSYDAVCAALNDQYGGGTVVT--- 110
Query: 414 SVEPAPH 420
V A H
Sbjct: 111 -VNAAAH 116
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 29.0 bits (64), Expect = 8.9
Identities = 19/115 (16%), Positives = 24/115 (20%), Gaps = 15/115 (13%)
Query: 145 PFDMRAPAGSSVEIPCKPDGEPLPRIS--WSKDEAEFVEDRNHKIHR----------TGS 192
+ P G + C DGE L I + E VED
Sbjct: 237 DHAVVPPGGEEPRMHCAVDGEWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCL 296
Query: 193 LRLYNIGPQDSGLYRCTASNLLGEDVAEGYLTVTGAPPIFIQRPVSTTYSTGSTS 247
+ P G C + PP P T
Sbjct: 297 ECPEHTLPSPEGATSCECEEGFFRAPQDPASMPCTRPP---SAPHYLTAVGMGAK 348
>1wgo_A VPS10 domain-containing receptor sorcs2; polycystic kidney disease,
PKD, structural genomics, KIAA1329 protein; NMR {Homo
sapiens} SCOP: b.1.3.1
Length = 123
Score = 27.8 bits (61), Expect = 8.9
Identities = 17/120 (14%), Positives = 35/120 (29%), Gaps = 8/120 (6%)
Query: 115 NCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSK 174
C ++ + R ++ ++ + G V + + + +
Sbjct: 7 GCEGGVDMQQSQVQLQCPLTPPRGLQVSIQGEAVAVRPGEDVLFVVRQEQGDVLTTKYQV 66
Query: 175 D--EAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYR--CTASNLLGEDVAEGYLTVTGAPP 230
D + N + Y G+YR A N G D A ++ V+G
Sbjct: 67 DLGDGFKAMYVNLTLTGEPIRHRYE----SPGIYRVSVRAENTAGHDEAVLFVQVSGPSS 122
Score = 27.4 bits (60), Expect = 9.3
Identities = 18/120 (15%), Positives = 37/120 (30%), Gaps = 8/120 (6%)
Query: 299 NCVAQNSEGSAESVAMIRINGHRAPRLVVKPFDMRAPAGSSVEIPCKPDGEPLPRISWSK 358
C ++ + R ++ ++ + G V + + + +
Sbjct: 7 GCEGGVDMQQSQVQLQCPLTPPRGLQVSIQGEAVAVRPGEDVLFVVRQEQGDVLTTKYQV 66
Query: 359 D--EAEFVEDRNHKIHRTGSLRLYNIGPQDSGLYR--CTASNLLGEDVAEGYLTVTGENS 414
D + N + Y G+YR A N G D A ++ V+G +S
Sbjct: 67 DLGDGFKAMYVNLTLTGEPIRHRYE----SPGIYRVSVRAENTAGHDEAVLFVQVSGPSS 122
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis,
oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}
Length = 280
Score = 28.6 bits (65), Expect = 9.4
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 14/52 (26%)
Query: 505 IQAGVKMNLSEDLS--------LGKAFFSPWRLVDEGGVDP-LLRGFITSPA 547
+A ++ L+++ + LG A R+ E LR F+TSP
Sbjct: 189 QEAAEQLGLTKETAELLTEQTVLGAA-----RMALETEQSVVQLRQFVTSPG 235
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.421
Gapped
Lambda K H
0.267 0.0588 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,893,750
Number of extensions: 948355
Number of successful extensions: 5572
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3332
Number of HSP's successfully gapped: 1175
Length of query: 940
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 837
Effective length of database: 3,825,930
Effective search space: 3202303410
Effective search space used: 3202303410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.0 bits)