Query psy11146
Match_columns 271
No_of_seqs 180 out of 1259
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 19:11:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11146.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11146hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00175 diphthine synthase; P 100.0 1.3E-51 2.8E-56 358.4 27.6 264 1-265 2-269 (270)
2 KOG3123|consensus 100.0 4.3E-48 9.3E-53 312.5 19.3 265 1-265 1-267 (272)
3 TIGR00522 dph5 diphthine synth 100.0 1.1E-46 2.4E-51 327.2 26.8 250 1-266 1-255 (257)
4 COG1798 DPH5 Diphthamide biosy 100.0 1E-45 2.2E-50 307.8 23.4 251 1-268 1-255 (260)
5 PRK04160 diphthine synthase; P 100.0 2.2E-40 4.7E-45 288.6 26.9 251 1-268 1-256 (258)
6 COG2875 CobM Precorrin-4 methy 100.0 3.1E-40 6.7E-45 272.0 20.7 222 1-255 4-232 (254)
7 PRK06136 uroporphyrin-III C-me 100.0 5.9E-40 1.3E-44 284.7 23.3 230 1-267 4-249 (249)
8 COG0007 CysG Uroporphyrinogen- 100.0 3.4E-39 7.3E-44 272.2 22.3 223 1-264 5-243 (244)
9 PRK07168 bifunctional uroporph 100.0 1.7E-39 3.8E-44 302.7 21.6 231 1-271 4-251 (474)
10 TIGR01469 cobA_cysG_Cterm urop 100.0 2.4E-36 5.3E-41 260.0 24.4 218 1-255 1-234 (236)
11 TIGR01465 cobM_cbiF precorrin- 100.0 1.7E-36 3.8E-41 259.8 23.2 219 2-254 1-227 (229)
12 PRK15473 cbiF cobalt-precorrin 100.0 1.2E-36 2.6E-41 264.9 21.3 219 1-255 9-237 (257)
13 COG2243 CobF Precorrin-2 methy 100.0 1E-36 2.3E-41 256.0 19.5 212 1-252 3-229 (234)
14 PRK05948 precorrin-2 methyltra 100.0 4.4E-36 9.6E-41 257.2 19.6 214 1-253 5-235 (238)
15 PLN02625 uroporphyrin-III C-me 100.0 1.4E-35 3.1E-40 258.9 22.7 219 1-255 16-250 (263)
16 PRK15478 cbiH cobalt-precorrin 100.0 1.1E-35 2.4E-40 255.8 20.9 216 1-255 1-226 (241)
17 PRK10637 cysG siroheme synthas 100.0 1.9E-35 4.1E-40 276.4 23.0 226 1-266 217-456 (457)
18 PRK05765 precorrin-3B C17-meth 100.0 2.9E-35 6.3E-40 254.4 19.2 216 1-257 3-229 (246)
19 COG2241 CobL Precorrin-6B meth 100.0 3.7E-35 7.9E-40 243.8 18.4 205 1-253 1-207 (210)
20 PRK05787 cobalt-precorrin-6Y C 100.0 3.5E-34 7.5E-39 242.4 21.9 205 1-253 1-209 (210)
21 PRK05990 precorrin-2 C(20)-met 100.0 4.2E-34 9.2E-39 246.3 20.3 207 1-252 4-236 (241)
22 TIGR01467 cobI_cbiL precorrin- 100.0 1.4E-33 3E-38 242.0 21.1 210 1-252 2-230 (230)
23 TIGR01466 cobJ_cbiH precorrin- 100.0 4.1E-33 8.9E-38 240.4 22.5 217 2-256 1-226 (239)
24 PF00590 TP_methylase: Tetrapy 100.0 7.3E-33 1.6E-37 234.0 20.1 197 1-236 1-210 (210)
25 COG1010 CobJ Precorrin-3B meth 100.0 8.7E-33 1.9E-37 228.7 19.5 215 1-253 4-228 (249)
26 TIGR02467 CbiE precorrin-6y C5 100.0 9E-33 2E-37 232.8 19.7 201 4-247 1-203 (204)
27 PRK05576 cobalt-precorrin-2 C( 100.0 2.3E-32 5E-37 234.2 22.3 209 1-252 3-226 (229)
28 PRK05991 precorrin-3B C17-meth 100.0 2.5E-32 5.5E-37 236.8 21.0 215 1-254 4-230 (250)
29 PRK14994 SAM-dependent 16S rib 100.0 7.5E-32 1.6E-36 236.4 18.4 199 1-237 13-215 (287)
30 PRK08284 precorrin 6A synthase 100.0 3.8E-31 8.2E-36 228.3 16.8 193 1-238 3-227 (253)
31 TIGR02434 CobF precorrin-6A sy 100.0 6.2E-31 1.3E-35 226.5 16.8 191 1-237 2-225 (249)
32 KOG1527|consensus 100.0 7.6E-29 1.6E-33 214.9 12.1 216 2-255 258-487 (506)
33 COG0313 Predicted methyltransf 99.9 1.5E-23 3.3E-28 178.9 18.7 212 1-251 6-225 (275)
34 TIGR00096 probable S-adenosylm 99.9 1.8E-21 3.8E-26 169.4 18.0 198 1-237 1-202 (276)
35 COG3956 Protein containing tet 99.6 9.1E-15 2E-19 127.2 15.5 204 1-251 4-223 (488)
36 COG0391 Uncharacterized conser 65.8 40 0.00087 30.4 8.2 25 14-38 178-205 (323)
37 COG1063 Tdh Threonine dehydrog 58.3 28 0.00061 31.6 6.1 76 2-86 172-249 (350)
38 cd00885 cinA Competence-damage 57.9 16 0.00035 29.7 4.0 50 5-55 38-89 (170)
39 COG1634 Uncharacterized Rossma 53.5 24 0.00053 30.0 4.4 69 2-86 55-125 (232)
40 KOG0024|consensus 52.4 53 0.0011 29.8 6.5 31 2-34 173-203 (354)
41 PF08452 DNAP_B_exo_N: DNA pol 52.3 2.1 4.6E-05 22.0 -1.3 11 257-267 2-12 (22)
42 TIGR01921 DAP-DH diaminopimela 52.2 46 0.001 30.1 6.3 93 20-116 55-154 (324)
43 COG1707 ACT domain-containing 43.0 1.4E+02 0.0031 24.3 7.0 31 18-56 58-88 (218)
44 cd07187 YvcK_like family of mo 37.5 1.3E+02 0.0028 27.0 6.8 19 14-32 164-182 (308)
45 TIGR03365 Bsubt_queE 7-cyano-7 37.0 99 0.0022 26.4 5.9 54 63-116 59-113 (238)
46 TIGR02495 NrdG2 anaerobic ribo 36.9 1.2E+02 0.0026 24.4 6.2 53 62-114 49-101 (191)
47 COG0602 NrdG Organic radical a 35.3 1.2E+02 0.0027 25.4 6.0 50 62-111 58-107 (212)
48 COG1509 KamA Lysine 2,3-aminom 35.0 74 0.0016 29.2 4.8 28 66-93 146-176 (369)
49 cd04915 ACT_AK-Ectoine_2 ACT d 33.1 45 0.00099 22.1 2.5 29 1-30 4-32 (66)
50 PF08043 Xin: Xin repeat; Int 32.6 16 0.00035 17.5 0.1 6 264-269 10-15 (16)
51 TIGR01826 CofD_related conserv 31.5 2E+02 0.0043 25.9 6.9 19 14-32 161-179 (310)
52 cd04922 ACT_AKi-HSDH-ThrA_2 AC 30.7 57 0.0012 21.0 2.7 30 1-30 3-32 (66)
53 cd04917 ACT_AKiii-LysC-EC_2 AC 29.8 82 0.0018 20.4 3.3 31 1-31 3-33 (64)
54 PF03808 Glyco_tran_WecB: Glyc 29.7 1.6E+02 0.0036 23.6 5.8 58 21-87 1-59 (172)
55 PRK01215 competence damage-ind 28.8 2.2E+02 0.0047 24.9 6.7 50 5-55 42-93 (264)
56 cd04919 ACT_AK-Hom3_2 ACT doma 26.7 73 0.0016 20.6 2.7 30 1-30 3-32 (66)
57 cd04920 ACT_AKiii-DAPDC_2 ACT 26.3 84 0.0018 20.5 2.9 31 1-31 2-32 (63)
58 COG1058 CinA Predicted nucleot 26.1 76 0.0017 27.6 3.3 45 9-56 44-92 (255)
59 cd04924 ACT_AK-Arch_2 ACT doma 26.0 77 0.0017 20.3 2.7 30 1-30 3-32 (66)
60 COG0206 FtsZ Cell division GTP 23.5 5.1E+02 0.011 23.6 8.2 102 2-111 14-136 (338)
61 COG1432 Uncharacterized conser 23.2 2.2E+02 0.0048 23.2 5.4 46 67-116 100-147 (181)
62 cd06167 LabA_like LabA_like pr 22.9 2E+02 0.0044 22.0 5.0 41 68-112 90-132 (149)
63 PRK09417 mogA molybdenum cofac 22.4 1.6E+02 0.0034 24.5 4.4 49 6-54 45-96 (193)
64 PF01933 UPF0052: Uncharacteri 22.0 1.2E+02 0.0025 27.1 3.8 28 3-32 163-190 (300)
65 cd03145 GAT1_cyanophycinase Ty 21.9 1.9E+02 0.0042 24.2 5.0 115 1-118 1-129 (217)
66 PF01936 NYN: NYN domain; Int 21.8 1.5E+02 0.0034 22.3 4.1 40 67-110 85-126 (146)
67 KOG2666|consensus 21.6 3.3E+02 0.0071 24.9 6.3 13 20-32 73-85 (481)
68 PRK09330 cell division protein 21.0 3.6E+02 0.0078 25.0 6.8 103 2-112 16-137 (384)
69 TIGR00288 conserved hypothetic 20.1 2.9E+02 0.0063 22.3 5.3 38 69-110 97-136 (160)
70 PRK14717 putative glycine/sarc 20.1 1.8E+02 0.0039 21.4 3.7 18 65-82 8-25 (107)
71 PF13353 Fer4_12: 4Fe-4S singl 20.1 1.8E+02 0.0039 21.8 4.1 51 64-114 39-95 (139)
No 1
>PTZ00175 diphthine synthase; Provisional
Probab=100.00 E-value=1.3e-51 Score=358.45 Aligned_cols=264 Identities=58% Similarity=0.983 Sum_probs=237.0
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccc-cCchhHhhhhcCcceeecchhhHHHHHHHHHHhcCCCCEE
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILI-DDIIDDMKSFYGKDIIIADREMVESASDVILHNADVEDVA 79 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~-~~~~~~l~~~~~~~v~~~~~~~~~~~~~~i~~~~~~~~V~ 79 (271)
|||+||+|||||++||+||+++|++||+|+++.++|... .. .+.++.+++++....+++.+++.++++++.+++++|+
T Consensus 2 mlylVG~GpGdp~lLTlkal~~L~~ADvV~~d~~ts~l~~~~-~~~l~~~~gk~~~~~~r~~~e~~~~~ii~~a~~~~Vv 80 (270)
T PTZ00175 2 MLYIIGLGLGDEKDITVKGLEAVKSADVVYLESYTSILINSN-KEKLEEFYGKPVIEADREMVEEGCDEILEEAKEKNVA 80 (270)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCEEEEecccchhccCC-HHHHHHhcCCeeEecCccCHHHHHHHHHHHhCCCCEE
Confidence 799999999999999999999999999999998765421 12 4455556676655556656666667788888778899
Q ss_pred EEecCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHHHHHHcCCccccccceeEEeeecCCCCCCchhhHHHhhhccCcc
Q psy11146 80 LLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAAGCCGLQLYNFGETVSIPFWTESWKPDSFYDKIVENKSRGLH 159 (271)
Q Consensus 80 ~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~a~a~~g~~l~~~~~~v~i~~~~~~~~~~~~~~~i~~~~~~~~~ 159 (271)
+|++|||++|+++.++..++.+.|+++++|||+|+++|++.+|+++++||.++++++.++|+.|.++++.++.|+..++|
T Consensus 81 ~L~~GDP~i~~t~~~l~~~~~~~gi~vevIPGvSi~sA~~~~Gl~~~~fg~~~sv~~~t~~~~~~s~~~~i~~n~~~glh 160 (270)
T PTZ00175 81 FLVVGDPFCATTHTDLYLRAKKKGIEVEVIHNASIMNAIGCTGLQLYRFGETVSIPFFTETWKPDSFYDKIKANRDNGLH 160 (270)
T ss_pred EEECCCCCccCCHHHHHHHHHHCCCcEEEECCcCHHHHHhhcCCCcCCCCceEEEEEEeCCCCCCChhHHHHHHHHcCCc
Confidence 99999999999999998888889999999999999998888999999999999999999999999999999999999999
Q ss_pred eeeeecccCCccchHHHhhcccccCCeeeccHHHHHHHHHHhhhcC--CCCCCCCeEEEEeccCCCCeEEEEeeccchhh
Q psy11146 160 TLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTK--PGLSTADLAVGIARVGSETQHIVATSLSNMTE 237 (271)
Q Consensus 160 ~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~~~~~~--~~~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~ 237 (271)
|++++|...+..++++++++...|++.+||++.+.+++|.++.+++ ++++++++++++.|+|+++|++..++|+++.+
T Consensus 161 Tl~lldi~~~~~~~~~~~~~~~~~~~~~~M~~~~a~~~l~~i~~~~~~~~~~~~t~~v~v~r~g~~~q~i~~gtL~~l~~ 240 (270)
T PTZ00175 161 TLCLLDIKVKERSVENLMKGRKIYEPPRYMTINQAIEQLLEVEEKKGGGVIAEDTLVVGVARVGSDDQQIVSGTLEDLLD 240 (270)
T ss_pred eEEEEeeeccccchhhhhccccccCCCcCCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEECCCCCceEEEEEHHHHhh
Confidence 9999999888889999999999999999999999999999877653 57889999999999999999999999999998
Q ss_pred ccCCCCceEEEEecc-CCcchHHHHHhhh
Q psy11146 238 TDMGKPLHSLIIVGN-IHPVESEFLAQYS 265 (271)
Q Consensus 238 ~~~~~~~~sliivg~-~~~~~~~~l~~~~ 265 (271)
.+++.|++++||+|+ .|++|.|+|++|.
T Consensus 241 ~d~g~PlhsLIv~g~~Lh~~E~e~l~~~~ 269 (270)
T PTZ00175 241 VDFGPPLHSLVICAPTLHDIEEEFFELYR 269 (270)
T ss_pred cccCCCCEEEEEECCcCCHHHHHHHHHhh
Confidence 899999999999998 9999999999984
No 2
>KOG3123|consensus
Probab=100.00 E-value=4.3e-48 Score=312.46 Aligned_cols=265 Identities=62% Similarity=1.053 Sum_probs=249.4
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhcCcceeecchhhHHHHHHHHHHhcCCCCEEE
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKDIIIADREMVESASDVILHNADVEDVAL 80 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~i~~~~~~~~V~~ 80 (271)
|+|+||.|.||.+.||+|+++++++|.-|+.+.|+|+...+....+++++||+++..+|+..++..+.|++.+.+.+|++
T Consensus 1 mlYlIGlGL~d~kDITlrGLeaVK~c~rVylEaYTSil~~~l~~~lEk~yGk~iilADRemvEq~sd~il~~ad~~dVa~ 80 (272)
T KOG3123|consen 1 MLYLIGLGLGDEKDITLRGLEAVKKCARVYLEAYTSILGVGLDATLEKFYGKEIILADREMVEQESDKILDEADKEDVAF 80 (272)
T ss_pred CeEEEeccCCcccceehhhHHHHhhhheehHHHHHHHHHhhhhHHHHHHhCceeEeccHHHHHhhHHHHhhhhhhcceEE
Confidence 89999999999999999999999999999999998875433133488889999999999988888899999988899999
Q ss_pred EecCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHHHHHHcCCccccccceeEEeeecCCCCCCchhhHHHhhhccCcce
Q psy11146 81 LVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAAGCCGLQLYNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHT 160 (271)
Q Consensus 81 l~~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~a~a~~g~~l~~~~~~v~i~~~~~~~~~~~~~~~i~~~~~~~~~~ 160 (271)
|+-||||...+++.++.++++.++++++|...|-++|+.+.|+.+++||++||+++++..|+|.+|++.|++|.+.|+||
T Consensus 81 LVVGdPfgATTHsDlvlRAk~~~ipv~vIHNASimNavG~CGLqlY~fGetVSiv~ftd~wrP~SfydkI~~Nr~~glHT 160 (272)
T KOG3123|consen 81 LVVGDPFGATTHSDLVLRAKELGIPVEVIHNASIMNAVGCCGLQLYNFGETVSIVFFTDNWRPESFYDKIKENRQLGLHT 160 (272)
T ss_pred EEecCcccccchhhhheehhhcCCCeEEEechHHHhhhccceeeeeccCcEEEEEEEccCcCchhHHHHHHHhhhcCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccCCccchHHHhhcccccCCeeeccHHHHHHHHHHhhhcC--CCCCCCCeEEEEeccCCCCeEEEEeeccchhhc
Q psy11146 161 LCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTK--PGLSTADLAVGIARVGSETQHIVATSLSNMTET 238 (271)
Q Consensus 161 ~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~~~~~~--~~~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~ 238 (271)
++++|...++..|+++++++..++|.+||+..+.+++|+++.+++ ..+.+|++++-+.|+|.++|.|+.+++.++...
T Consensus 161 LcLLDIkvkEqs~enl~rgrkiyeppRymsvn~a~~QlLei~e~~~~~~~~edT~~v~~~R~Gs~~q~i~~gt~~~l~~~ 240 (272)
T KOG3123|consen 161 LCLLDIKVKEQSVENLARGRKIYEPPRYMSVNEAAEQLLEIEEKRGEPAYTEDTLCVAVARVGSDDQKIVAGTIKDLAEV 240 (272)
T ss_pred EEEEEEeeccHHHHHHhccccccCCchhhhHHHHHHHHHHHHHhhCCCCcCCCceEEEEEecCCCcceeeheeHHhHhhc
Confidence 999999999999999999999999999999999999999998776 578899999999999999999999999999999
Q ss_pred cCCCCceEEEEeccCCcchHHHHHhhh
Q psy11146 239 DMGKPLHSLIIVGNIHPVESEFLAQYS 265 (271)
Q Consensus 239 ~~~~~~~sliivg~~~~~~~~~l~~~~ 265 (271)
+++.|++|++|+|+.|+.|.|+|..|.
T Consensus 241 d~G~PLHslii~ge~h~lE~e~l~~~~ 267 (272)
T KOG3123|consen 241 DFGEPLHSLIIPGETHPLELEMLESFA 267 (272)
T ss_pred ccCCCceeEEeecCcChHHHHHHHHhc
Confidence 999999999999999999999998874
No 3
>TIGR00522 dph5 diphthine synthase. This protein participates in the modification of a specific His of elongation factor 2 of eukarotes and Archaea to diphthamide. The protein was characterized in Saccharomyces cerevisiae and designated DPH5.
Probab=100.00 E-value=1.1e-46 Score=327.20 Aligned_cols=250 Identities=43% Similarity=0.735 Sum_probs=208.8
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccc-cCchhHhhhhcCcceeecchhhHHHHHHHHHHhcCCCCEE
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILI-DDIIDDMKSFYGKDIIIADREMVESASDVILHNADVEDVA 79 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~-~~~~~~l~~~~~~~v~~~~~~~~~~~~~~i~~~~~~~~V~ 79 (271)
|||+||+|||||++||+||+++|++||+|+++.+++... .. .+.++.+.+++.....+..+++..+.+++.+++++|+
T Consensus 1 ~l~~VG~GPGd~~llTl~a~~~L~~advV~~~~~~s~l~~~~-~~~~~~~~~~~~~~~~~~~~e~~~~~ii~~~~~~~Vv 79 (257)
T TIGR00522 1 MLYLIGLGLYDENDISVKGLEAIKKADEVYAEFYTSKLLGSS-IEEIEEFFGKRVVVLERSDVEENSFRLIERAKSKDVA 79 (257)
T ss_pred CEEEEECCCCChhhhCHHHHHHHHcCCEEEEeccchhhcccc-HHHHHHHhCCcccccCHHHHHHHHHHHHHHhcCCCEE
Confidence 899999999999999999999999999999986544210 11 3444445566544334444555556778877668999
Q ss_pred EEecCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHHHH-HHcCCccccccceeEEeeecCCCCCCchhhHHHhhhccCc
Q psy11146 80 LLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAA-GCCGLQLYNFGETVSIPFWTESWKPDSFYDKIVENKSRGL 158 (271)
Q Consensus 80 ~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~a~-a~~g~~l~~~~~~v~i~~~~~~~~~~~~~~~i~~~~~~~~ 158 (271)
+|++|||++|+++.++..++.+.+++++|||||||++|+ |++|+|++++|.+.++++.++|+++.++++.++++...+.
T Consensus 80 ~l~~GDP~i~~~~~~l~~~l~~~~i~vevIPGiSs~~aaaa~~g~~lt~~g~~~~v~~~s~~~~~~~~~~~~~~~l~~~~ 159 (257)
T TIGR00522 80 LLVAGDPMVATTHTDLKLEAKRKGIETRIIHGASISSAVCGLTGLQLYKFGKTATIVFFTDNYRPQTPYNVIKENRKIGL 159 (257)
T ss_pred EEECCcCcccCCHHHHHHHHHHCCCeEEEECcHhHHHHHHHHcCCCcccCCCcEEEEEecCCcCCCCHHHHHHHHHhcCC
Confidence 999999999999999988877889999999999999976 9999999999999999999999998888888999988899
Q ss_pred ceeeeecccCCccchHHHhhcccccCCeeeccHHHHHHHHHHhhhc--CCCCCCCCeEEEEeccCCCCeEEEEeeccchh
Q psy11146 159 HTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKT--KPGLSTADLAVGIARVGSETQHIVATSLSNMT 236 (271)
Q Consensus 159 ~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~~~~~--~~~~~~~~~v~v~~~l~~~~E~i~~~~l~~l~ 236 (271)
+|+++++...+. .++|.+.+.++.|.++.++ ++++++++++++++|+|++||+++.++++++.
T Consensus 160 ~Tlvll~~~~~~---------------~~~M~~~~~~~~l~~~~~~l~~~g~~~~tpv~vv~~~~~~de~i~~gtl~~l~ 224 (257)
T TIGR00522 160 HTLVLLDIHPKE---------------NRAMTIGEGLENLLEEEEKRKTGAITPDTYAVVIARAGSGKPVVKCDKIENLK 224 (257)
T ss_pred CcEEEEecccCc---------------ccccCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEEECCCCCceEEEEEHHHHH
Confidence 999999875422 3578888877777765432 26889999999999999999999999999998
Q ss_pred hccCCCCceEEEEecc-CCcchHHHHHhhhc
Q psy11146 237 ETDMGKPLHSLIIVGN-IHPVESEFLAQYST 266 (271)
Q Consensus 237 ~~~~~~~~~sliivg~-~~~~~~~~l~~~~~ 266 (271)
+.++..+..++||+|+ .+++|+++|+|+..
T Consensus 225 ~~~~~~~~~alii~g~~l~~~e~~~~~~~~~ 255 (257)
T TIGR00522 225 NYDFGEPLHCLVVLAKTLHFMEFEYLREFAD 255 (257)
T ss_pred hcccCCCCeEEEEeCCCCCHHHHHHHHHhcc
Confidence 8877778889999998 88999999999864
No 4
>COG1798 DPH5 Diphthamide biosynthesis methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-45 Score=307.77 Aligned_cols=251 Identities=48% Similarity=0.762 Sum_probs=230.6
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccc-cCchhHhhhhcCcceeecchhhHHHHHHHHHHhcCCCCEE
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILI-DDIIDDMKSFYGKDIIIADREMVESASDVILHNADVEDVA 79 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~-~~~~~~l~~~~~~~v~~~~~~~~~~~~~~i~~~~~~~~V~ 79 (271)
|+|+||.|+.|...+|+++++++++||.||.+.|+|+.. .. .+.++.+++++++..+|.+.|+.-+.|++.+++++|+
T Consensus 1 mL~lVGlGL~d~~diTl~gleavr~~d~Vy~E~YTS~~~~~~-~e~le~~~gkev~~~~R~dlE~~~~~il~~a~~~~Va 79 (260)
T COG1798 1 MLYLVGLGLYDEGDITLKGLEAVRKADRVYAEFYTSILLGSN-LEKLEELIGKEVILLDREDLEENSRSILDRAKDKDVA 79 (260)
T ss_pred CeEEEEeccCccCceeHHHHHHHHhCCEEEEEeeecccccch-HHHHHHHhCCceEeccHHHHhhcchhHHHHHhcCCEE
Confidence 899999999999999999999999999999999988753 33 6677777899999999988887656699999888899
Q ss_pred EEecCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHHHH-HHcCCccccccceeEEeeecCCCCCCchhhHHHhhhccCc
Q psy11146 80 LLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAA-GCCGLQLYNFGETVSIPFWTESWKPDSFYDKIVENKSRGL 158 (271)
Q Consensus 80 ~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~a~-a~~g~~l~~~~~~v~i~~~~~~~~~~~~~~~i~~~~~~~~ 158 (271)
+|+.|||+++.|+..+..++++.|++++||||+|.++|+ +++|+..++||+++|+++.+.++.|.++++.|++|.+.|+
T Consensus 80 ll~~GDpmvATTH~~L~~~A~~~Gi~v~vIh~~Si~~Aa~g~tGL~~YkFG~~vTip~~~~~~~p~s~yd~Ik~N~~~GL 159 (260)
T COG1798 80 LLVAGDPMVATTHVDLRIEAKRRGIEVRVIHGASIINAAIGLTGLQNYKFGKTVTLPFPSENFFPTSPYDVIKENLERGL 159 (260)
T ss_pred EEecCCcceehhHHHHHHHHHHcCCcEEEEcccHHHHHHhhhhhhheeccCCceEecccccCcCCCcHHHHHHHhhhcCc
Confidence 999999999999999998999999999999999999987 9999999999999999999999999999999999999999
Q ss_pred ceeeeecccCCccchHHHhhcccccCCeeeccHHHHHHHHHHhhhcC--CCCCCCCeEEEEeccCCCCeEEEEeeccchh
Q psy11146 159 HTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTK--PGLSTADLAVGIARVGSETQHIVATSLSNMT 236 (271)
Q Consensus 159 ~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~~~~~~--~~~~~~~~v~v~~~l~~~~E~i~~~~l~~l~ 236 (271)
||++++|...+. +||++++.+++|+++-+++ +.+.+++.++++.++|.++|.+..++++++.
T Consensus 160 HTl~lLDi~~~~----------------r~Mt~~ea~~~LLe~e~~~~~~~~~~d~~~vvvaR~Gs~~~~v~ag~l~~l~ 223 (260)
T COG1798 160 HTLVLLDIKEDE----------------RYMTANEALELLLEAEERRGRGVLTEDTLAVVVARAGSGDEVVRAGTLEELA 223 (260)
T ss_pred cceEEEEecccc----------------cccCHHHHHHHHHHHHHHhcCCCcCCCceEEEEEecCCCCceEEechHHHHh
Confidence 999999986542 5899999999999988775 4677899999999999999999999999999
Q ss_pred hccCCCCceEEEEeccCCcchHHHHHhhhccC
Q psy11146 237 ETDMGKPLHSLIIVGNIHPVESEFLAQYSTQE 268 (271)
Q Consensus 237 ~~~~~~~~~sliivg~~~~~~~~~l~~~~~~~ 268 (271)
+.+++.|+++++|+|+.|.+|+++|.|+.-.|
T Consensus 224 ~~Dfg~Plh~lvvp~~Lh~~E~e~L~~~a~~~ 255 (260)
T COG1798 224 DEDFGEPLHSLVVPGRLHFVEAEYLRELAGAP 255 (260)
T ss_pred hcccCCCceEEEEeccccHHHHHHHHHHhcCh
Confidence 99999999999999999999999999986543
No 5
>PRK04160 diphthine synthase; Provisional
Probab=100.00 E-value=2.2e-40 Score=288.59 Aligned_cols=251 Identities=44% Similarity=0.701 Sum_probs=193.9
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccc-cCchhHhhhhcCcceeecchhhHHHHHHHHH-HhcCCCCE
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILI-DDIIDDMKSFYGKDIIIADREMVESASDVIL-HNADVEDV 78 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~-~~~~~~l~~~~~~~v~~~~~~~~~~~~~~i~-~~~~~~~V 78 (271)
|||+||+|||||++||+||+++|++||+|+++.+.+... .. .+.+..+.+++....++..+++.++.++ +.+++++|
T Consensus 1 ~l~vVG~GpG~pd~lT~~a~~~L~~advv~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 79 (258)
T PRK04160 1 MLYFIGLGLYDERDITLKGLEALRNADKVYAEFYTSILMGTT-IEKLEELIGKEIIVLDREDVEQESEKIILEEAKEKNV 79 (258)
T ss_pred CEEEEECCCCChhhhCHHHHHHHHcCCEEEEecccCcccccc-HHHHHHHhCCceeecCHHHHHHHHHHHHHHHHcCCCE
Confidence 899999999999999999999999999999986643210 11 2334444444433334445555555555 55555899
Q ss_pred EEEecCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHHHH-HHcCCccccccceeEEeeecCCCCCCchhhHHHhhhccC
Q psy11146 79 ALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAA-GCCGLQLYNFGETVSIPFWTESWKPDSFYDKIVENKSRG 157 (271)
Q Consensus 79 ~~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~a~-a~~g~~l~~~~~~v~i~~~~~~~~~~~~~~~i~~~~~~~ 157 (271)
++|++|||++|+++.++..++++.+++++|+|||||+|++ |++|++++++|.++++++.+.++.+...++.+.++...+
T Consensus 80 v~L~sGDP~~ys~~~~l~~~l~~~~~~veviPGISS~~aaaa~~g~~~~~~g~~~s~~~~~~~~~~~~~~~~i~~~~~~~ 159 (258)
T PRK04160 80 AFLTAGDPMVATTHVDLRLEAKKRGIEVRVIHGVSIYSAAISLTGLQNYKFGKSVTVPFPYGNFFPESPYDVIKDNLERG 159 (258)
T ss_pred EEEeCCCCccccCHHHHHHHHHHCCCcEEEECChhHHHHHHHHhCCCcccCCceEEEccCcCCcCCCCHHHHHHHHHhcC
Confidence 9999999999999998877777788999999999999976 999999999998888877666665555566777777667
Q ss_pred cceeeeecccCCccchHHHhhcccccCCeeeccHHHHHHHHHHhhhcC--CCCCCCCeEEEEeccCCCCeEEEEeeccch
Q psy11146 158 LHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTK--PGLSTADLAVGIARVGSETQHIVATSLSNM 235 (271)
Q Consensus 158 ~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~~~~~~--~~~~~~~~v~v~~~l~~~~E~i~~~~l~~l 235 (271)
.+++++++...+ ..+|.++.+++.|.+.-++. +++++++++++++|+|+++|+++.++++++
T Consensus 160 ~~~~vll~~~~~----------------~~~~~~~~~~~~L~~~~~~l~~g~~~~~~~v~V~e~l~~~~E~i~~~tl~~l 223 (258)
T PRK04160 160 LHTLVLLDIKAD----------------GRYMTANEALELLLELEEKRGEGVISEDTLAVVVARAGSPDPVVRAGRLEEL 223 (258)
T ss_pred CCcEEEEEeccC----------------CcccCHHHHHHHHHHHHHHhcccccCCCCEEEEEEecCCCCceEEEccHHHH
Confidence 777777753211 23578888888777642221 346679999999999999999999999999
Q ss_pred hhccCCCCceEEEEeccCCcchHHHHHhhhccC
Q psy11146 236 TETDMGKPLHSLIIVGNIHPVESEFLAQYSTQE 268 (271)
Q Consensus 236 ~~~~~~~~~~sliivg~~~~~~~~~l~~~~~~~ 268 (271)
.+.+++.++++++++++.+.+|+++|+-+.-.|
T Consensus 224 ~~~~f~~~~~~~ii~~~~~~~~~~~~~~~~~~~ 256 (258)
T PRK04160 224 ADYDFGGPLHILIIPGKLHFMEAEALKELAGAP 256 (258)
T ss_pred hhCCCCCCCEEEEEeCCCCHHHHHHHHHHhcCC
Confidence 877887778899999999999999998876443
No 6
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=100.00 E-value=3.1e-40 Score=271.97 Aligned_cols=222 Identities=23% Similarity=0.312 Sum_probs=176.4
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhc-CcceeecchhhHHHHHHHHHHhcCC-CCE
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFY-GKDIIIADREMVESASDVILHNADV-EDV 78 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~i~~~~~~-~~V 78 (271)
++||||+|||||||||+|++++|++||+|+|. .|+ ++ .++|+.+. +.+++-....+++++++.+.+..++ ++|
T Consensus 4 ~VyFIGAGPGdpdLiTvkg~~ll~~advviYA--GSL--V~-~elL~~~~~~aei~nSa~~tLeeIi~~m~~a~~~Gk~V 78 (254)
T COG2875 4 KVYFIGAGPGDPDLITVKGQRLLEKADVVIYA--GSL--VP-PELLEYCRPDAEIVNSASLTLEEIIDLMVDAVREGKDV 78 (254)
T ss_pred eEEEEccCCCCcceeeehHHHHHhhCCEEEEC--CCc--CC-HHHHhhcCCCCEEEecCcCCHHHHHHHHHHHHHcCCeE
Confidence 58999999999999999999999999999997 555 45 78887654 4555433333678888888888888 999
Q ss_pred EEEecCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHHHH-HHcCCccc--cccceeEEeeecCCCCCCchhhHHHhhhc
Q psy11146 79 ALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAA-GCCGLQLY--NFGETVSIPFWTESWKPDSFYDKIVENKS 155 (271)
Q Consensus 79 ~~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~a~-a~~g~~l~--~~~~~v~i~~~~~~~~~~~~~~~i~~~~~ 155 (271)
++|.+|||.+||....-..++.+.|++++++||||||+|+ |.+|+.++ +.++++.+...+ +|.
T Consensus 79 vRLhSGDpsiYgA~~EQm~~L~~~gI~yevvPGVss~~AAAA~L~~ELT~P~vsQtvilTR~s--grt------------ 144 (254)
T COG2875 79 VRLHSGDPSIYGALAEQMRELEALGIPYEVVPGVSSFAAAAAALGIELTVPGVSQTVILTRPS--GRT------------ 144 (254)
T ss_pred EEeecCChhHHHHHHHHHHHHHHcCCCeEEeCCchHHHHHHHHhCceeecCCcceeEEEEccc--cCC------------
Confidence 9999999999998877777778899999999999999975 99999999 455555443333 221
Q ss_pred cCcceeeeecccCCccchHHHhhcccccCCeeeccHHHHHHHHHHhhhcCCCCCCCCeEEEEeccCCCCeEEEEeeccch
Q psy11146 156 RGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATSLSNM 235 (271)
Q Consensus 156 ~~~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~v~v~~~l~~~~E~i~~~~l~~l 235 (271)
+. ...+.++.+++++.++ ++|.+.+.+-+...++++ ++|++||||+|+.++|||||+++++||+|+
T Consensus 145 ---------~v-pe~e~l~~la~~~aTm--~I~L~v~~I~~vv~~L~~--g~y~~dtPVaVV~rAsWpDe~ii~GTL~dI 210 (254)
T COG2875 145 ---------PV-PEKESLAALAKHGATM--VIFLGVHAIDKVVEELLE--GGYPPDTPVAVVYRASWPDEKIIRGTLEDI 210 (254)
T ss_pred ---------CC-CchhHHHHHHhcCcee--EeeehhhHHHHHHHHHhc--CCCCCCCCEEEEEecCCCcccEEEeeHHHH
Confidence 11 2346788899988888 899998876665555554 799999999999999999999999999999
Q ss_pred hhc--cCCCCceEEEEeccCCc
Q psy11146 236 TET--DMGKPLHSLIIVGNIHP 255 (271)
Q Consensus 236 ~~~--~~~~~~~sliivg~~~~ 255 (271)
.++ +.+....++|+||+...
T Consensus 211 a~kv~~~~i~rTAlIiVG~~l~ 232 (254)
T COG2875 211 AEKVKEAGIRRTALIIVGDVLD 232 (254)
T ss_pred HHHHHhcCceeEEEEEEccccC
Confidence 876 33344569999998644
No 7
>PRK06136 uroporphyrin-III C-methyltransferase; Reviewed
Probab=100.00 E-value=5.9e-40 Score=284.73 Aligned_cols=230 Identities=23% Similarity=0.308 Sum_probs=169.2
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhc-Ccceeec-c-----hhhHHHHHHHHHHhc
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFY-GKDIIIA-D-----REMVESASDVILHNA 73 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~-~~~v~~~-~-----~~~~~~~~~~i~~~~ 73 (271)
|||+||+|||||++||+||+++|++||+|+++.+.. .+.++.+. +++.... . ...+++..+.+.+.+
T Consensus 4 ~l~iVGvGpGdp~~lT~~A~~~L~~advI~~~~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 77 (249)
T PRK06136 4 KVYLVGAGPGDPDLITLKGVRLLEQADVVLYDDLVS------PEILAYAKPDAELIYVGKRAGRHSTKQEEINRLLVDYA 77 (249)
T ss_pred EEEEEEECCCChHHHHHHHHHHHhcCCEEEEcCCCC------HHHHhhCCCCCEEEeCCCcCCCCCcCHHHHHHHHHHHH
Confidence 689999999999999999999999999999975421 33443322 2222211 1 112334445566766
Q ss_pred CC-CCEEEEecCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHHHH-HHcCCccccccceeEEeeecCCCCCCchhhHHH
Q psy11146 74 DV-EDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAA-GCCGLQLYNFGETVSIPFWTESWKPDSFYDKIV 151 (271)
Q Consensus 74 ~~-~~V~~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~a~-a~~g~~l~~~~~~v~i~~~~~~~~~~~~~~~i~ 151 (271)
.+ ++|++|++|||++|+++.++..++.+.+++++|||||||++++ |++|+||++.+.+.++.+.+.|+++.+..
T Consensus 78 ~~g~~V~~l~~GDP~~ys~~~~l~~~l~~~~~~veviPGISS~~aaaa~~g~~l~~~~~~~~~~~~~~~~~~~~~~---- 153 (249)
T PRK06136 78 RKGKVVVRLKGGDPFVFGRGGEELEALEAAGIPYEVVPGITAAIAAAAYAGIPLTHRGVARSVTFVTGHEAAGKLE---- 153 (249)
T ss_pred HCCCeEEEEeCCCchhhhcHHHHHHHHHHCCCCEEEEcCccHHHHHHHHcCCCcccCCcceeEEEEecccCCCccc----
Confidence 66 8999999999999999999887777779999999999999976 99999999877766666778787654311
Q ss_pred hhhccCcceeeeecccCCccchHHHhhcccccCCeeeccHHH---HHHHHHHhhhcCCCCCCCCeEEEEeccCCCCeEEE
Q psy11146 152 ENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQ---AAQQLVEITKTKPGLSTADLAVGIARVGSETQHIV 228 (271)
Q Consensus 152 ~~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~---~~~~L~~~~~~~~~~~~~~~v~v~~~l~~~~E~i~ 228 (271)
....++.+.++..++ +++++.++ +++.|.+ .++++++++++++|+|+++|+++
T Consensus 154 -----------------~~~~~~~l~~~~~~~--vl~~~~~~~~~i~~~L~~-----~g~~~~~~~~v~~~lg~~~E~i~ 209 (249)
T PRK06136 154 -----------------PEVNWSALADGADTL--VIYMGVRNLPYIAAQLLA-----AGRAPDTPVAIIENGTTPEQRVV 209 (249)
T ss_pred -----------------cccCHHHHhCCCCeE--EEECCHHHHHHHHHHHHH-----cCCCCCCeEEEEEeCCCCCcEEE
Confidence 011233343332233 45555544 4444444 57877899999999999999999
Q ss_pred Eeeccchhhc----cCCCCceEEEEeccCCcchHHHHHhhhcc
Q psy11146 229 ATSLSNMTET----DMGKPLHSLIIVGNIHPVESEFLAQYSTQ 267 (271)
Q Consensus 229 ~~~l~~l~~~----~~~~~~~sliivg~~~~~~~~~l~~~~~~ 267 (271)
.++++++.+. +++.+ ++|++|+.. ..++.|+|||++
T Consensus 210 ~~~l~el~~~~~~~~~~~~--~vviig~~~-~~~~~~~~~~~~ 249 (249)
T PRK06136 210 RGTLGTIAEGAAAEDIQSP--AIIVIGEVV-ALRAKLAWFEAQ 249 (249)
T ss_pred EEEHHHHHHHHHhcCCCCC--EEEEEchhh-CccccccccccC
Confidence 9999999866 66666 999999875 467899999985
No 8
>COG0007 CysG Uroporphyrinogen-III methylase [Coenzyme metabolism]
Probab=100.00 E-value=3.4e-39 Score=272.21 Aligned_cols=223 Identities=22% Similarity=0.278 Sum_probs=175.3
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhc-Ccceee----cch-hhHHHHHHH-HHHhc
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFY-GKDIII----ADR-EMVESASDV-ILHNA 73 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~-~~~v~~----~~~-~~~~~~~~~-i~~~~ 73 (271)
.+|+||+|||||+|||+||.++|++||+|+|+... + .++++... +.+.+. ..+ ...++.+++ +++.+
T Consensus 5 kV~lVGAGPGdp~LLTlka~~~L~~ADvvlyD~LV-----~-~~il~~~~~~a~~i~vGkr~g~~~~~q~eIn~~lv~~a 78 (244)
T COG0007 5 KVYLVGAGPGDPGLLTLRALRALQEADVVLYDRLV-----P-EEVLALARRDAERIYVGKRPGGHSKPQDEINALLVELA 78 (244)
T ss_pred eEEEEecCCCChhhhhHHHHHHHhhCCEEEEcCcC-----C-HHHHHhhccCCEEEEecCcCCCCCCCHHHHHHHHHHHH
Confidence 37999999999999999999999999999997653 3 56666543 333222 111 123444555 77888
Q ss_pred CC-CCEEEEecCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHHHH-HHcCCccccccceeEEeeecCCCCCCchhhHHH
Q psy11146 74 DV-EDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAA-GCCGLQLYNFGETVSIPFWTESWKPDSFYDKIV 151 (271)
Q Consensus 74 ~~-~~V~~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~a~-a~~g~~l~~~~~~v~i~~~~~~~~~~~~~~~i~ 151 (271)
++ ++|++|+.|||++|+++..+...+.+.|+++||+|||||..|+ ++.|+|+++.+.+-++.+.++|.++..
T Consensus 79 ~~G~~VVRLKgGDP~iFGRggEE~~~l~~~gI~~eVVPGiTSa~a~~a~agIPlT~R~~a~s~~~vTgh~~~~~------ 152 (244)
T COG0007 79 REGKRVVRLKGGDPYIFGRGGEEIEALAEAGIEFEVVPGITSAIAAPAYAGIPLTHRGVASSFTFVTGHDRDGK------ 152 (244)
T ss_pred hcCCeEEEecCCCCCeecCcHHHHHHHHHcCCceEEeCccchHHHHHHHcCCceeecCccceEEEEeCcCCCCC------
Confidence 88 9999999999999999999888888999999999999999987 999999997777777778888754321
Q ss_pred hhhccCcceeeeecccCCccchHHHhhcccccCCeeeccHHH---HHHHHHHhhhcCCCCCCCCeEEEEeccCCCCeEEE
Q psy11146 152 ENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQ---AAQQLVEITKTKPGLSTADLAVGIARVGSETQHIV 228 (271)
Q Consensus 152 ~~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~---~~~~L~~~~~~~~~~~~~~~v~v~~~l~~~~E~i~ 228 (271)
-+|.++++...++ ++||+.++ +++.|++ +|+++++|++++++.++++|+++
T Consensus 153 -------------------~~w~~la~~~~Tl--Vi~Mg~~~l~~i~~~Li~-----~G~~~~tpvAvi~~gt~~~Qr~~ 206 (244)
T COG0007 153 -------------------LDWEALARSVGTL--VILMGASRLAEIARELIA-----HGRSPDTPVAVIENGTTPDQRVV 206 (244)
T ss_pred -------------------cChHHhcccCCCE--EEEeCcchHHHHHHHHHH-----cCCCCCCCEEEEEcCCCcceEEE
Confidence 2567777655566 89998876 5555555 78899999999999999999999
Q ss_pred Eeeccchhhc----cCCCCceEEEEeccCCcchHHHHHhh
Q psy11146 229 ATSLSNMTET----DMGKPLHSLIIVGNIHPVESEFLAQY 264 (271)
Q Consensus 229 ~~~l~~l~~~----~~~~~~~sliivg~~~~~~~~~l~~~ 264 (271)
.++|+++.+. ....| +++++|+.+. -++.+.|+
T Consensus 207 ~gtL~~l~~~~~~~~~~~P--aiiviG~vv~-~~~~~~~~ 243 (244)
T COG0007 207 VGTLGDLAELAEEAGLTPP--ALIVIGEVVN-LREKLAWF 243 (244)
T ss_pred EeEHHHHHHHHHhcCCCCC--EEEEEcceee-chhhcccc
Confidence 9999999774 24557 9999999876 34445554
No 9
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=100.00 E-value=1.7e-39 Score=302.65 Aligned_cols=231 Identities=21% Similarity=0.258 Sum_probs=170.6
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhcC--cceee----c-chhhHHHHHHH-HHHh
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFYG--KDIII----A-DREMVESASDV-ILHN 72 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~~--~~v~~----~-~~~~~~~~~~~-i~~~ 72 (271)
+||+||+|||||++||+||+++|++||+|+|+... + ...++ +.. .+++. . +....++.+++ ++++
T Consensus 4 ~V~lVGaGPGdp~LLTlrA~~~L~~ADVVvydrlv-----~-~~~l~-~~~~~~~~i~~gk~~~~~~~~qe~i~~~l~~~ 76 (474)
T PRK07168 4 YVYLVGAGPGDEGLITKKAIECLKRADIVLYDRLL-----N-PFFLS-YTKQTCELMYCGKMPKNHIMRQEMINAHLLQF 76 (474)
T ss_pred EEEEEEECCCChHHHHHHHHHHHHhCCEEEEeCcC-----C-HHHHh-hcCCCcEEEeccCcCCCccccHHHHHHHHHHH
Confidence 48999999999999999999999999999996431 1 22222 221 11111 1 11112333333 6677
Q ss_pred cCC-CCEEEEecCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHHHH-HHcCCccccccceeEEeeecCCCCCCchhhHH
Q psy11146 73 ADV-EDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAA-GCCGLQLYNFGETVSIPFWTESWKPDSFYDKI 150 (271)
Q Consensus 73 ~~~-~~V~~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~a~-a~~g~~l~~~~~~v~i~~~~~~~~~~~~~~~i 150 (271)
+++ ++|++|++|||++|+++.++...+...++++||||||||++|+ |++|+||++.+.+.++.+.++|.+...
T Consensus 77 a~~Gk~VvrL~~GDP~vfg~~~ee~~~l~~~gi~~eVVPGISS~~aaaA~aGiPlt~r~~~~s~~viT~h~~~~~----- 151 (474)
T PRK07168 77 AKEGKIVVRLKGGDPSIFGRVGEEAETLAAANIPYEIVPGITSSIAASSYAGIPLTHRNYSNSVTLLTGHAKGPL----- 151 (474)
T ss_pred HhCCCEEEEEeCCCchHHhhHHHHHHHHHhCCCCEEEECChhHHHHHHHHcCCCCCCccccceEEEEccCcCCcc-----
Confidence 777 8999999999999999988877777789999999999999976 999999997666666677888865321
Q ss_pred HhhhccCcceeeeecccCCccchHHHhhcccccCCeeeccHHH---HHHHHHHhhhcCCCCCCCCeEEEEeccCCCCeEE
Q psy11146 151 VENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQ---AAQQLVEITKTKPGLSTADLAVGIARVGSETQHI 227 (271)
Q Consensus 151 ~~~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~---~~~~L~~~~~~~~~~~~~~~v~v~~~l~~~~E~i 227 (271)
....+|+.+... .++ ++||..++ +++.|++ .|+++++|+++++++|+++|++
T Consensus 152 -----------------~~~~~~~~l~~~-~tl--V~lm~~~~l~~I~~~L~~-----~G~~~~tpvavv~~~t~~~Qri 206 (474)
T PRK07168 152 -----------------TDHGKYNSSHNS-DTI--AYYMGIKNLPTICENLRQ-----AGKKEDTPVAVIEWGTTGKQRV 206 (474)
T ss_pred -----------------ccchhHHHhcCC-CeE--EEEcChhhHHHHHHHHHH-----cCcCCCCeEEEEEECCCCCcEE
Confidence 001234444322 233 66776554 5555655 6888899999999999999999
Q ss_pred EEeeccchhhc----cCCCCceEEEEeccCCcchHHHHHhhhccCCCC
Q psy11146 228 VATSLSNMTET----DMGKPLHSLIIVGNIHPVESEFLAQYSTQELTG 271 (271)
Q Consensus 228 ~~~~l~~l~~~----~~~~~~~sliivg~~~~~~~~~l~~~~~~~~~~ 271 (271)
+.++|+++.+. .+..| ++++||+++.. ++.++||+++||||
T Consensus 207 ~~~tL~~l~~~~~~~~~~~p--avivvG~vv~~-~~~~~~~~~~PL~G 251 (474)
T PRK07168 207 VTGTLSTIVSIVKNENISNP--SMTIVGDVVSL-RNQIAWKERKPLHG 251 (474)
T ss_pred EEEEHHHHHHHHHhcCCCCC--EEEEEChHhcc-ccccchhhcccccC
Confidence 99999999542 45556 99999998765 56789999999998
No 10
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase. This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.
Probab=100.00 E-value=2.4e-36 Score=260.02 Aligned_cols=218 Identities=23% Similarity=0.333 Sum_probs=156.5
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhc-Ccceeec------chhhHHHHHHHHHHhc
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFY-GKDIIIA------DREMVESASDVILHNA 73 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~-~~~v~~~------~~~~~~~~~~~i~~~~ 73 (271)
+||+||+|||||++||+||+++|++||+|+++.+.+ .++++.+. +.+.... ....+++..+.+.+.+
T Consensus 1 ~i~iVG~GpG~~~~lT~~a~~~l~~advI~~~~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 74 (236)
T TIGR01469 1 KVYLVGAGPGDPELLTLKALRLLQEADVVLYDALVS------PEILAYAPPQAELIDVGKRPGCHSKKQEEINRLLVELA 74 (236)
T ss_pred CEEEEecCCCChHHhHHHHHHHHHhCCEEEEeCCCC------HHHHhhCCCCCEEEeCCCCCCCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999999999999975421 34443332 2222211 1113455545566666
Q ss_pred CC-CCEEEEecCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHHHH-HHcCCccccccceeEEeeecCCCCCCchhhHHH
Q psy11146 74 DV-EDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAA-GCCGLQLYNFGETVSIPFWTESWKPDSFYDKIV 151 (271)
Q Consensus 74 ~~-~~V~~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~a~-a~~g~~l~~~~~~v~i~~~~~~~~~~~~~~~i~ 151 (271)
.+ ++|++|++|||++|+++.++..++.+.+++++++|||||+|++ |++|+||++++.+.++.+.+.|+++.+...
T Consensus 75 ~~g~~V~~l~~GDP~~~~~~~~l~~~~~~~~~~v~viPGiSs~~~a~a~~g~~l~~~~~~~~~~i~~~~~~~~~~~~--- 151 (236)
T TIGR01469 75 REGKKVVRLKGGDPFVFGRGGEEAEALAEAGIPFEVVPGVTSAIAAAAYAGIPLTHRGVASSVTFVTGHEADDKALE--- 151 (236)
T ss_pred HCCCeEEEEeCcCcccccCHHHHHHHHHHCCCCEEEECCccHHHHHHHHcCCCcccCCCcceEEEEEcccCCCcccc---
Confidence 66 8999999999999999999887777778999999999999976 999999997765445556677766443100
Q ss_pred hhhccCcceeeeecccCCccchHHHhhcccccCCeeeccHHH---HHHHHHHhhhcCCCCCCCCeEEEEeccCCCCeEEE
Q psy11146 152 ENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQ---AAQQLVEITKTKPGLSTADLAVGIARVGSETQHIV 228 (271)
Q Consensus 152 ~~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~---~~~~L~~~~~~~~~~~~~~~v~v~~~l~~~~E~i~ 228 (271)
..++.+.+...++ +++++.++ +++.|.+ .++++++++++++|+|+++|+++
T Consensus 152 -------------------~~~~~~~~~~~~~--vl~~~~~~~~~i~~~L~~-----~g~~~~~~~~v~~~lg~~~E~i~ 205 (236)
T TIGR01469 152 -------------------VDWEALAKGAGTL--VIYMGVRNLPEIAKELIE-----HGRSPDTPVAVVEWATTPNQRVL 205 (236)
T ss_pred -------------------cCHHHHhcCCCeE--EEECCHHHHHHHHHHHHH-----cCCCCCCcEEEEEECCCCCcEEE
Confidence 0133333322222 45555544 3444444 57877899999999999999999
Q ss_pred Eeeccchhh----ccCCCCceEEEEeccCCc
Q psy11146 229 ATSLSNMTE----TDMGKPLHSLIIVGNIHP 255 (271)
Q Consensus 229 ~~~l~~l~~----~~~~~~~~sliivg~~~~ 255 (271)
.++++++.+ .+++.+ +++++|+..+
T Consensus 206 ~~~l~el~~~~~~~~~~~~--~vvivg~~~~ 234 (236)
T TIGR01469 206 IGTLGDLAEKAAEANLKSP--ALIVIGEVVA 234 (236)
T ss_pred EEEHHHHHHHHHhcCCCCC--EEEEEcceec
Confidence 999999975 356666 9999998654
No 11
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=100.00 E-value=1.7e-36 Score=259.81 Aligned_cols=219 Identities=21% Similarity=0.246 Sum_probs=155.4
Q ss_pred EEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhc-CcceeecchhhHHHHHHHHHHhcCC-CCEE
Q psy11146 2 FYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFY-GKDIIIADREMVESASDVILHNADV-EDVA 79 (271)
Q Consensus 2 l~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~i~~~~~~-~~V~ 79 (271)
||+||+|||||++||+||+++|++||+|++++. . +. .+.++.+. ++++.......+++..+.+.+++++ ++|+
T Consensus 1 v~iVG~GpG~~~~lT~~a~~~l~~advV~~~~~--~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~V~ 75 (229)
T TIGR01465 1 VYFIGAGPGDPDLITVKGRKLLESADVILYAGS--L--VP-PELLAWCRPGAEVVNSAGMSLEEIVDIMSDAHREGKLVV 75 (229)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHHhCCEEEEeCC--C--CC-HHHHhhCCCCCEEEEcCCCCHHHHHHHHHHHHHCCCeEE
Confidence 699999999999999999999999999999633 1 11 33443332 3333221122456666667777766 8999
Q ss_pred EEecCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHHHH-HHcCCccccccceeEEeeecCCCCCCchhhHHHhhhccCc
Q psy11146 80 LLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAA-GCCGLQLYNFGETVSIPFWTESWKPDSFYDKIVENKSRGL 158 (271)
Q Consensus 80 ~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~a~-a~~g~~l~~~~~~v~i~~~~~~~~~~~~~~~i~~~~~~~~ 158 (271)
+|++|||++|+++.++...+.+.+++++|+|||||++++ |++|+||+..+.+.++.+.+.|++....
T Consensus 76 ~L~~GDP~~~~~~~~l~~~~~~~g~~veviPGiSS~~aa~a~~g~~l~~~~~~~~~~~~~~~g~~~~~------------ 143 (229)
T TIGR01465 76 RLHTGDPSIYGAIAEQMQLLEALGIPYEVVPGVSSFFAAAAALGAELTVPEVSQTVILTRAEGRTPMP------------ 143 (229)
T ss_pred EEeCcCccccccHHHHHHHHHHCCCCEEEECChhHHHHHHHHcCCCccccCCccEEEEEeccCCCCCC------------
Confidence 999999999999999887777789999999999999976 9999999876655555566667653210
Q ss_pred ceeeeecccCCccchHHHhhcccccCCeeeccHHH---HHHHHHHhhhcCCCCCCCCeEEEEeccCCCCeEEEEeeccch
Q psy11146 159 HTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQ---AAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATSLSNM 235 (271)
Q Consensus 159 ~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~---~~~~L~~~~~~~~~~~~~~~v~v~~~l~~~~E~i~~~~l~~l 235 (271)
..+.|..+++...++ ++++.+++ +++.|.+ .++++++++++++|+|+++|+++.++++++
T Consensus 144 ----------~~~~l~~~~~~~~~~--vi~~~~~~~~~i~~~L~~-----~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l 206 (229)
T TIGR01465 144 ----------EGEKLADLAKHGATM--AIFLSAHILDKVVKELIE-----GGYSEDTPVAVVYRATWPDEKIVRGTLADL 206 (229)
T ss_pred ----------ChHHHHHHhcCCCeE--EEECcHHHHHHHHHHHHH-----cCcCCCCcEEEEEeCCCCCcEEEEEEHHHH
Confidence 011233333322222 45555533 4444444 478778999999999999999999999999
Q ss_pred hhc--cCCCCceEEEEeccCC
Q psy11146 236 TET--DMGKPLHSLIIVGNIH 254 (271)
Q Consensus 236 ~~~--~~~~~~~sliivg~~~ 254 (271)
.+. +...+..+++++|+..
T Consensus 207 ~~~~~~~~~~~~~~ivvg~~~ 227 (229)
T TIGR01465 207 ADLVREEGIYRTTLILVGPAL 227 (229)
T ss_pred HHHHHhcCCCCCEEEEECccc
Confidence 764 2222334999999754
No 12
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=100.00 E-value=1.2e-36 Score=264.87 Aligned_cols=219 Identities=19% Similarity=0.213 Sum_probs=153.8
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhc-CcceeecchhhHHHHHHHHHHhcCC-CCE
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFY-GKDIIIADREMVESASDVILHNADV-EDV 78 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~i~~~~~~-~~V 78 (271)
+||+||+|||||++||+||+++|++||+|+++.. .. . ..+++.+. .+.+.......+++.++.+.+.+++ ++|
T Consensus 9 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~--~~--~-~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~g~~V 83 (257)
T PRK15473 9 CVWFVGAGPGDKELITLKGYRLLQQAQVVIYAGS--LI--N-TELLDYCPAQAECHDSAELHLEQIIDLMEAGVKAGKTV 83 (257)
T ss_pred EEEEEEeCCCChHHhhHHHHHHHHhCCEEEEecc--cC--C-HHHHhhcCCCCEEEecCCCCHHHHHHHHHHHHHCCCeE
Confidence 5899999999999999999999999999999632 11 1 33343222 2222211112456666667777666 899
Q ss_pred EEEecCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHHHH-HHcCCccccccceeEEeeecCCCCCCchhhHHHhhhccC
Q psy11146 79 ALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAA-GCCGLQLYNFGETVSIPFWTESWKPDSFYDKIVENKSRG 157 (271)
Q Consensus 79 ~~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~a~-a~~g~~l~~~~~~v~i~~~~~~~~~~~~~~~i~~~~~~~ 157 (271)
|+|++|||++||++.++...+...+++++|+|||||+|++ |++|+||+..+.+-++.+.+.|++....
T Consensus 84 v~L~sGDP~~yg~~~~l~~~l~~~~i~veiiPGISS~~aaaA~lg~pl~~~~~~~~~~v~s~hG~~~~~----------- 152 (257)
T PRK15473 84 VRLQTGDVSLYGSIREQGEELTKRGIDFQVVPGVSSFLGAAAELGVEYTVPEVSQSLIITRMEGRTPVP----------- 152 (257)
T ss_pred EEEeCcCchhhhhHHHHHHHHHHCCCCEEEeCChhHHHHHHHHcCCCcccccccccEEEEeecCCCCCC-----------
Confidence 9999999999999999987777778999999999999975 9999999832222222344567653210
Q ss_pred cceeeeecccCCccchHHHhhcccccCCeeeccHH---HHHHHHHHhhhcCCCCCCCCeEEEEeccCCCCeEEEEeeccc
Q psy11146 158 LHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVS---QAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATSLSN 234 (271)
Q Consensus 158 ~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~---~~~~~L~~~~~~~~~~~~~~~v~v~~~l~~~~E~i~~~~l~~ 234 (271)
+...|..+++...+. ++++..+ ++++.|.+ .|+++++++++++|+|+++|+++.+++++
T Consensus 153 -----------~~~~l~~~~~~~~t~--vi~~~~~~~~~i~~~L~~-----~g~~~~~~v~v~e~l~~~~E~i~~~tl~~ 214 (257)
T PRK15473 153 -----------AREQLESFASHQTSM--AIFLSVQRIHRVAERLIA-----GGYPATTPVAVIYKATWPESQTVRGTLAD 214 (257)
T ss_pred -----------chhhHHHHhcCCCeE--EEECCchhHHHHHHHHHH-----cCCCCCCeEEEEEECCCCCcEEEEEEHHH
Confidence 001233333332222 4455443 45555555 57878999999999999999999999999
Q ss_pred hhhc----cCCCCceEEEEeccCCc
Q psy11146 235 MTET----DMGKPLHSLIIVGNIHP 255 (271)
Q Consensus 235 l~~~----~~~~~~~sliivg~~~~ 255 (271)
+.+. ....| ++++||+...
T Consensus 215 l~~~~~~~~~~~~--~~ivvG~~~~ 237 (257)
T PRK15473 215 IAEKVRDAGIRKT--ALILVGNFLG 237 (257)
T ss_pred HHHHHHhcCCCCC--EEEEEchhcc
Confidence 8653 23456 9999998765
No 13
>COG2243 CobF Precorrin-2 methylase [Coenzyme metabolism]
Probab=100.00 E-value=1e-36 Score=255.96 Aligned_cols=212 Identities=26% Similarity=0.328 Sum_probs=158.8
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhcC--cce---ee---cc-h----hhHHHHHH
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFYG--KDI---II---AD-R----EMVESASD 67 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~~--~~v---~~---~~-~----~~~~~~~~ 67 (271)
|+|+||+||||||+||+||+++|++||||++|.......++ .++++.+.. ... .+ .+ + +.|++.++
T Consensus 3 klygVGvGPGDPeLlTlkAi~~L~~adVi~~P~~~g~~slA-r~Iv~~y~~~~~~~~~l~fPm~~~~~e~~~~~~~e~a~ 81 (234)
T COG2243 3 KLYGVGLGPGDPELLTLKAIRALKKADVVYVPSKKGKGSLA-REIVEDYLTPGSRIVELHFPMTTDMREELEDAWEEAAA 81 (234)
T ss_pred eEEEEecCCCChhhhhHHHHHHHhhCCEEEEecCCCccchH-HHHHHHhcCCCceeeEEEeccCCchHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999442222233 777777652 221 11 23 2 25777778
Q ss_pred HHHHhcCC-CCEEEEecCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHHHH-HHcCCccccccceeEEeeecCCCCCCc
Q psy11146 68 VILHNADV-EDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAA-GCCGLQLYNFGETVSIPFWTESWKPDS 145 (271)
Q Consensus 68 ~i~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~a~-a~~g~~l~~~~~~v~i~~~~~~~~~~~ 145 (271)
++.+++.+ ++|+|++.|||++||++.++..+....++++++||||||++|| |++|+|+..-+++.+
T Consensus 82 ~va~~l~~G~~VAf~~lGDP~~YsTf~~l~~~l~~~~~e~e~VPGVsS~~a~aa~~~~pL~~g~~~l~------------ 149 (234)
T COG2243 82 EVAAELEAGRDVAFLTLGDPTFYSTFMYLLERLRERGFEVEVVPGVSSFSACAARLGVPLVEGDDSLS------------ 149 (234)
T ss_pred HHHHHHHcCCeEEEEEccCccHHHHHHHHHHHhhccCCceEEeCCcchHHHHHHHhCCceeccCceeE------------
Confidence 88888888 8999999999999999999988887788999999999999987 999999874434333
Q ss_pred hhhHHHhhhccCcceeeeecccCCccchHHHhhcccccCCeeeccHHHHHHHHHHhhhcCCCCCCCCeEEEEeccCCCCe
Q psy11146 146 FYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQ 225 (271)
Q Consensus 146 ~~~~i~~~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~v~v~~~l~~~~E 225 (271)
+++++.....+++.+. .+|+++.||.++..+.+.+++.+++... .+++++|+++++|
T Consensus 150 -----------------Vlp~t~~~~~~~~~l~---~~d~~VvMK~~~~~~~i~~~l~~~g~~~---~~~~v~R~~m~~e 206 (234)
T COG2243 150 -----------------VLPATRPDEELERALA---DFDTAVVMKVGRNFEKLRRLLAKLGLLD---RAVYVERATMAGE 206 (234)
T ss_pred -----------------EEeccCchhhHHhHHh---hCCeEEEEecCCcHHHHHHHHHhcCCCc---eEEEEeecCCCCc
Confidence 3344333333333222 4566889999988888888766553333 6779999999999
Q ss_pred EEEEeeccchhhccCCCCceEEEEecc
Q psy11146 226 HIVATSLSNMTETDMGKPLHSLIIVGN 252 (271)
Q Consensus 226 ~i~~~~l~~l~~~~~~~~~~sliivg~ 252 (271)
+|+. +.+....+ .+|||++++.+
T Consensus 207 ~i~~--l~~~~~~~--~~Yfs~ii~~r 229 (234)
T COG2243 207 KIVR--LAEAERDE--KPYFSTILVRR 229 (234)
T ss_pred EEEe--ccccCccc--CCceEEEEEec
Confidence 9997 45543322 38999999864
No 14
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=100.00 E-value=4.4e-36 Score=257.19 Aligned_cols=214 Identities=21% Similarity=0.202 Sum_probs=150.9
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCccc-ccccCchhHhhhhc--Ccceee------cch----hhHHHHHH
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTS-ILIDDIIDDMKSFY--GKDIII------ADR----EMVESASD 67 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s-~~~~~~~~~l~~~~--~~~v~~------~~~----~~~~~~~~ 67 (271)
.+|+||+||||||+||+||+++|++||+|++|.... ....+ .++++.+. +++++. .++ ..|++.++
T Consensus 5 ~ly~VGvGPGdp~LlTlkA~~~L~~advi~~p~~~~~~~s~a-~~i~~~~~~~~~~~~~l~fpm~~~~~~~~~~~~~~~~ 83 (238)
T PRK05948 5 TLYGISVGPGDPELITLKGLRLLQSAPVVAFPAGLAGQPGLA-EQIIAPWLSPQQIKLPLYFPYVQDEEQLEQAWQAAAD 83 (238)
T ss_pred EEEEEEecCCChHHhHHHHHHHHhhCCEEEEeCCCCCchhHH-HHHHHHHcCCCcEEEEecCCccCChHHHHHHHHHHHH
Confidence 489999999999999999999999999999986421 00012 55666554 233321 121 14566667
Q ss_pred HHHHhcCC-CCEEEEecCCCCCCCcHHHHHHHHhc--CCCCEEEEcCchHHHHH-HHcCCccccccceeEEeeecCCCCC
Q psy11146 68 VILHNADV-EDVALLVVGDPYGATTHTDLVLRARQ--SNIPTKVVHNASILNAA-GCCGLQLYNFGETVSIPFWTESWKP 143 (271)
Q Consensus 68 ~i~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~~~~--~~~~v~iiPGiSs~~a~-a~~g~~l~~~~~~v~i~~~~~~~~~ 143 (271)
.+.+.+.+ ++|++|++|||++||++.++...+++ +++++||||||||++|+ |++|+||+..+++++ +.++|...
T Consensus 84 ~i~~~~~~g~~v~~l~~GDp~~ys~~~~l~~~l~~~~~~~~veivPGIss~~a~aa~~g~pL~~~~e~l~--ii~~~~~~ 161 (238)
T PRK05948 84 QVWHYLEQGEDVAFACEGDVSFYSTFTYLAQTLQELYPQVAIQTIPGVCSPLAAAAALGIPLTLGSQRLA--ILPALYHL 161 (238)
T ss_pred HHHHHHHcCCeEEEEeCCChHHHHHHHHHHHHHHhcCCCCCEEEECChhHHHHHHHHhCCCeecCCCeEE--EEcCCCCH
Confidence 78888877 89999999999999999998665443 58999999999999976 999999996555444 33444321
Q ss_pred CchhhHHHhhhccCcceeeeecccCCccchHHHhhcccccCCeeeccHHHHHHHHHHhhhcCCCCCCCCeEEEEeccCCC
Q psy11146 144 DSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGSE 223 (271)
Q Consensus 144 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~v~v~~~l~~~ 223 (271)
++++..+. ..+++++|+.++..+.+.+.+++. ++.+ ++.+++|+|++
T Consensus 162 ---------------------------~~l~~~l~---~~~~vVlmk~~~~~~~i~~~L~~~-g~~~--~~~vv~~~~~~ 208 (238)
T PRK05948 162 ---------------------------EELEQALT---WADVVVLMKVSSVYPQVWQWLKAR-NLLE--QASLVERATTP 208 (238)
T ss_pred ---------------------------HHHHHHHh---CCCEEEEEECCccHHHHHHHHHhC-CCCC--CEEEEEECCCC
Confidence 12222222 123478888776555566655533 5543 58999999999
Q ss_pred CeEEEEeeccchhhccCCCCceEEEEeccC
Q psy11146 224 TQHIVATSLSNMTETDMGKPLHSLIIVGNI 253 (271)
Q Consensus 224 ~E~i~~~~l~~l~~~~~~~~~~sliivg~~ 253 (271)
+|++++ ++.++... ..+|+|++|+++.
T Consensus 209 ~E~i~~-~l~~~~~~--~~~Y~S~iiv~~~ 235 (238)
T PRK05948 209 EQVIYR-NLEDYPDL--RLPYFSLLIIQKR 235 (238)
T ss_pred CcEEEe-ehhhcCcC--CCCceEEEEEcCC
Confidence 999887 45555432 4689999999864
No 15
>PLN02625 uroporphyrin-III C-methyltransferase
Probab=100.00 E-value=1.4e-35 Score=258.89 Aligned_cols=219 Identities=22% Similarity=0.336 Sum_probs=156.0
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhc-Ccceeec------chhhHHHHHHHHHHhc
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFY-GKDIIIA------DREMVESASDVILHNA 73 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~-~~~v~~~------~~~~~~~~~~~i~~~~ 73 (271)
+||+||+|||||++||+||+++|++||+|+++.+.+ .++++.+. ++++... ....+++..+.+.+.+
T Consensus 16 ~l~vVG~GpGdp~~LTl~a~~~l~~ADvI~~~~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 89 (263)
T PLN02625 16 NVFLVGTGPGDPDLLTLKALRLLQTADVVLYDRLVS------PDILDLVPPGAELLYVGKRGGYHSRTQEEIHELLLSFA 89 (263)
T ss_pred EEEEEEeCCCChHHhHHHHHHHHhcCCEEEEeCcCC------HHHHHhcCCCCEEEecCCcCCccccCHHHHHHHHHHHH
Confidence 589999999999999999999999999999975421 34444332 2222211 1113455555566666
Q ss_pred CC-CCEEEEecCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHHHH-HHcCCccccccceeEEeeecCCCCCCchhhHHH
Q psy11146 74 DV-EDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAA-GCCGLQLYNFGETVSIPFWTESWKPDSFYDKIV 151 (271)
Q Consensus 74 ~~-~~V~~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~a~-a~~g~~l~~~~~~v~i~~~~~~~~~~~~~~~i~ 151 (271)
.+ ++|++|++|||++|+++.++..++...+++++|+|||||+|++ |++|+||++.+.+.++.+.++|+++.+... +
T Consensus 90 ~~g~~Vvvl~~GDP~~ys~~~~l~~~l~~~~~~veiiPGISS~~aaaA~lg~pl~~~~~~~~~~i~s~h~~~~~~~~-~- 167 (263)
T PLN02625 90 EAGKTVVRLKGGDPLVFGRGGEEMDALRKNGIPVTVVPGITAAIGAPAELGIPLTHRGVATSVRFLTGHDREGGTDP-L- 167 (263)
T ss_pred HCCCeEEEEcCCCchhhhhHHHHHHHHHHCCCCEEEECCccHHHHHHHHcCCCcccCCccceEEEEecccCCCcccc-h-
Confidence 66 8999999999999999999887777778999999999999976 999999996554444456778876533100 0
Q ss_pred hhhccCcceeeeecccCCccchHHHhhcccccCCeeec---cHHHHHHHHHHhhhcCCCCCCCCeEEEEeccCCCCeEEE
Q psy11146 152 ENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFM---SVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIV 228 (271)
Q Consensus 152 ~~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~v~v~~~l~~~~E~i~ 228 (271)
..++.+.++..++ ++++ .+.++++.|.+ .++++++++++++|+|+++|+++
T Consensus 168 -------------------~~~~~~~~~~~t~--vl~~~~~~~~~i~~~L~~-----~g~~~~~~v~v~e~l~~~~E~i~ 221 (263)
T PLN02625 168 -------------------DVAEAAADPDTTL--VVYMGLGTLPSLAEKLIA-----AGLPPDTPAAAVERGTTPEQRVV 221 (263)
T ss_pred -------------------hhHHHHhCCCCeE--EEECchhhHHHHHHHHHH-----cCCCCCCeEEEEEECCCCCcEEE
Confidence 0111222211122 3333 24456666665 57877899999999999999999
Q ss_pred Eeeccchhh----ccCCCCceEEEEeccCCc
Q psy11146 229 ATSLSNMTE----TDMGKPLHSLIIVGNIHP 255 (271)
Q Consensus 229 ~~~l~~l~~----~~~~~~~~sliivg~~~~ 255 (271)
.++++++.+ ..++.+ +++++|+.+.
T Consensus 222 ~~tl~el~~~~~~~~~~~~--~vviig~~~~ 250 (263)
T PLN02625 222 FGTLEDIAEDVAAAGLVSP--TVIVVGEVVA 250 (263)
T ss_pred EEEHHHHHHHHHhcCCCCC--EEEEEchhhC
Confidence 999999976 345556 9999998654
No 16
>PRK15478 cbiH cobalt-precorrin-3B C(17)-methyltransferase; Provisional
Probab=100.00 E-value=1.1e-35 Score=255.84 Aligned_cols=216 Identities=18% Similarity=0.172 Sum_probs=149.9
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhc-CcceeecchhhHHHHHHHHHHhcCC-CCE
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFY-GKDIIIADREMVESASDVILHNADV-EDV 78 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~i~~~~~~-~~V 78 (271)
|||+||+|||||++||+||+++|++||+|+++.. . .+.+..+. +++++........+..+.+++.+++ ++|
T Consensus 1 ml~~VG~GPGdp~lLTlrA~~~L~~ADvVv~~~~--~-----~~lv~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~g~~V 73 (241)
T PRK15478 1 MLSVIGIGPGSQAMMTMEAIEALQAAEIVVGYKT--Y-----THLVKAFTGDKQVIKTGMCKEIERCQAAIELAQAGHNV 73 (241)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHcCCEEEEcCc--H-----HHHHHhhcCCCEEEECCCchHHHHHHHHHHHHHCCCeE
Confidence 8999999999999999999999999999998632 2 45555443 4444332222222334456677777 999
Q ss_pred EEEecCCCCCCCcHHHHHHHHhcC--CCCEEEEcCchHHHHH-HHcCCccccccceeEEeeecCCCCCCchhhHHHhhhc
Q psy11146 79 ALLVVGDPYGATTHTDLVLRARQS--NIPTKVVHNASILNAA-GCCGLQLYNFGETVSIPFWTESWKPDSFYDKIVENKS 155 (271)
Q Consensus 79 ~~l~~GDP~~~~~~~~l~~~~~~~--~~~v~iiPGiSs~~a~-a~~g~~l~~~~~~v~i~~~~~~~~~~~~~~~i~~~~~ 155 (271)
++|++|||++|+....+...+... +++++|+|||||++++ |++|+||++-....++ +....++. .+
T Consensus 74 v~L~sGDP~~~g~~~~~~~~l~~~~~~~~veviPGiSs~~aaaa~~g~plt~~~~~~s~---~~~~~~~~---~~----- 142 (241)
T PRK15478 74 ALISSGDAGIYGMAGLVLELVSKQKLDVEVRLIPGMTASIAAASLLGAPLMHDFCHISL---SDLLTPWP---VI----- 142 (241)
T ss_pred EEEECCCCCcchhHHHHHHHHHhcCCCCcEEEeCCHHHHHHHHHHhCCCcccCcceeec---ccCCCCcH---HH-----
Confidence 999999999999988775544333 5679999999999976 9999999632122221 10111221 11
Q ss_pred cCcceeeeecccCCccchHHHhhcccccCCeeeccHHH-----HHHHHHHhhhcCCCCCCCCeEEEEeccCCCCeEEEEe
Q psy11146 156 RGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQ-----AAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVAT 230 (271)
Q Consensus 156 ~~~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-----~~~~L~~~~~~~~~~~~~~~v~v~~~l~~~~E~i~~~ 230 (271)
..+|.++++...++ ++||++++ +.+ ..++++ .++++++|+++++++|+++|+++.+
T Consensus 143 --------------~~~~~a~~~~~~tl--vlym~~~~~~~~~l~~-~~~ll~--~g~~~~tPvaiv~~~t~~~q~~~~~ 203 (241)
T PRK15478 143 --------------EKRIVAAGEADFVI--CFYNPRSRGREGHLAR-AFDLLA--ASKSAQTPVGVVKSAGRKKEEKWLT 203 (241)
T ss_pred --------------HHhHHHHhcCCeEE--EEECCcccccHHHHHH-HHHHHH--ccCCCCCEEEEEEeCCCCCeEEEEE
Confidence 11334444433344 67887754 322 223333 5899999999999999999999999
Q ss_pred eccchhhccCCCCceEEEEeccCCc
Q psy11146 231 SLSNMTETDMGKPLHSLIIVGNIHP 255 (271)
Q Consensus 231 ~l~~l~~~~~~~~~~sliivg~~~~ 255 (271)
+|+++.......| ++++||+...
T Consensus 204 tL~~l~~~~~~~~--~liivG~~~t 226 (241)
T PRK15478 204 TLGDMDFEPVDMT--SLVIVGNKTT 226 (241)
T ss_pred EHHHhhhcCCCCc--eEEEECCeee
Confidence 9999987555555 9999997643
No 17
>PRK10637 cysG siroheme synthase; Provisional
Probab=100.00 E-value=1.9e-35 Score=276.41 Aligned_cols=226 Identities=23% Similarity=0.304 Sum_probs=164.3
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhc-C-cceeecc---h--hhHHHHHHHHHHhc
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFY-G-KDIIIAD---R--EMVESASDVILHNA 73 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~-~-~~v~~~~---~--~~~~~~~~~i~~~~ 73 (271)
+||+||+|||||++||+||+++|++||+|+++.+.. ...++.+. . +.+.... . ..+++..+.+.+.+
T Consensus 217 ~l~iVG~GpGdp~lLTl~A~~~L~~ADvV~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 290 (457)
T PRK10637 217 EVVLVGAGPGDAGLLTLKGLQQIQQADVVVYDRLVS------DDIMNLVRRDADRVFVGKRAGYHCVPQEEINQILLREA 290 (457)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHHcCCEEEECCCCC------HHHHhhcccCCEEEEcCCCCCCCCcCHHHHHHHHHHHH
Confidence 589999999999999999999999999999974421 22222211 1 1111111 0 12445555677777
Q ss_pred CC-CCEEEEecCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHHHH-HHcCCccccccceeEEeeecCCCCCCchhhHHH
Q psy11146 74 DV-EDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAA-GCCGLQLYNFGETVSIPFWTESWKPDSFYDKIV 151 (271)
Q Consensus 74 ~~-~~V~~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~a~-a~~g~~l~~~~~~v~i~~~~~~~~~~~~~~~i~ 151 (271)
.+ ++|++|++|||++|+++.++..++...+++++|+|||||+|++ |++|+||+.++.+.++.++++|+++.+..
T Consensus 291 ~~G~~Vv~L~sGDP~~yg~~~~l~~~l~~~gi~vevVPGISS~~aAaA~~g~pl~~~~~~~~~~vis~h~~~~~~~---- 366 (457)
T PRK10637 291 QKGKRVVRLKGGDPFIFGRGGEELETLCNAGIPFSVVPGITAASGCSAYSGIPLTHRDYAQSVRLVTGHLKTGGEL---- 366 (457)
T ss_pred hCCCEEEEEeCCCccccccHHHHHHHHHhCCCCEEEECCHhHHHHHHHHcCCCcccCCceeeEEEEeCccCCCCcc----
Confidence 67 8899999999999999999887776779999999999999976 99999999766555555678887543211
Q ss_pred hhhccCcceeeeecccCCccchHHHhhcccccCCeeeccHH---HHHHHHHHhhhcCCCCCCCCeEEEEeccCCCCeEEE
Q psy11146 152 ENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVS---QAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIV 228 (271)
Q Consensus 152 ~~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~---~~~~~L~~~~~~~~~~~~~~~v~v~~~l~~~~E~i~ 228 (271)
+|..++....++ +++|+.+ ++++.|.+ .++++++++++++|+|+++|+++
T Consensus 367 --------------------~~~~l~~~~~t~--Vl~~~~~~~~~i~~~L~~-----~g~~~~~~v~v~e~l~~~~E~i~ 419 (457)
T PRK10637 367 --------------------DWENLAAEKQTL--VFYMGLNQAATIQQKLIE-----HGMPADMPVALVENGTSVTQRVV 419 (457)
T ss_pred --------------------CHHHHhCCCCeE--EEECCHhhHHHHHHHHHh-----cCCCCCCcEEEEEeCCCCCcEEE
Confidence 122333322233 4455544 34455544 57877899999999999999999
Q ss_pred Eeeccchhhc--cCCCCceEEEEeccCCcchHHHHHhhhc
Q psy11146 229 ATSLSNMTET--DMGKPLHSLIIVGNIHPVESEFLAQYST 266 (271)
Q Consensus 229 ~~~l~~l~~~--~~~~~~~sliivg~~~~~~~~~l~~~~~ 266 (271)
.++++++.+. +++.+ +++++|+.+. .++.|+||++
T Consensus 420 ~~tl~el~~~~~~~~~~--~viiig~~~~-~~~~~~~~~~ 456 (457)
T PRK10637 420 SGTLTQLGELAQQVNSP--SLIIVGRVVG-LRDKLNWFSN 456 (457)
T ss_pred EEEHHHHHHHHhcCCCC--EEEEEChhhc-hhhhhhhhhc
Confidence 9999999753 44444 9999999876 6778999986
No 18
>PRK05765 precorrin-3B C17-methyltransferase; Provisional
Probab=100.00 E-value=2.9e-35 Score=254.40 Aligned_cols=216 Identities=18% Similarity=0.207 Sum_probs=147.3
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhc-CcceeecchhhHHHHHHHHHHhcCC-CCE
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFY-GKDIIIADREMVESASDVILHNADV-EDV 78 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~i~~~~~~-~~V 78 (271)
|||+||+|||||++||+||+++|++||+|++++. . .+.+..+. ++++...+........+.+++.+++ ++|
T Consensus 3 ~v~iVG~GpGdp~~lT~ra~~~L~~AdvV~~~~~--~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~V 75 (246)
T PRK05765 3 KLYIVGIGPGSKEQRTIKAQEAIEKSNVIIGYNT--Y-----LRLISDLLDGKEVIGARMKEEIFRANTAIEKALEGNIV 75 (246)
T ss_pred EEEEEEcCCCChHHhhHHHHHHHHhCCEEEEccC--H-----HHHHHHhcCCCEEecCCchHHHHHHHHHHHHHHCCCcE
Confidence 6899999999999999999999999999998633 2 44555443 4444322211111122446676767 899
Q ss_pred EEEecCCCCCCCcHHHHHHHHhcCCC--CEEEEcCchHHHHH-HHcCCccc-cccceeEEeeecCCC--CCCchhhHHHh
Q psy11146 79 ALLVVGDPYGATTHTDLVLRARQSNI--PTKVVHNASILNAA-GCCGLQLY-NFGETVSIPFWTESW--KPDSFYDKIVE 152 (271)
Q Consensus 79 ~~l~~GDP~~~~~~~~l~~~~~~~~~--~v~iiPGiSs~~a~-a~~g~~l~-~~~~~v~i~~~~~~~--~~~~~~~~i~~ 152 (271)
++|++|||++|+++.++...+.+.++ +++|+|||||++++ |++|+||+ ++ .+.+.|. .|.. .+.
T Consensus 76 v~l~~GDP~i~~~~~~~~~~l~~~~~~~~veviPGiSs~~aa~a~~g~pl~~~~------~~~s~~~~~~p~~---~~~- 145 (246)
T PRK05765 76 ALVSSGDPQVYGMAGLVFELISRRKLDVDVEVIPGVTAALAAAARLGSPLSLDF------VVISLSDLLIPRE---EIL- 145 (246)
T ss_pred EEEeCCCchhhhhHHHHHHHHHhcCCCCCEEEeCCHHHHHHHHHHhCCCCcCCc------EEEEcCCCCCChH---HHH-
Confidence 99999999999999888766555555 79999999999976 99999996 44 2344442 2221 100
Q ss_pred hhccCcceeeeecccCCccchHHHhhcccccCCeeeccH-HHHHHHHHHhhhcCCCCCCCCeEEEEeccCCCCeEEEEee
Q psy11146 153 NKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSV-SQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATS 231 (271)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~-~~~~~~L~~~~~~~~~~~~~~~v~v~~~l~~~~E~i~~~~ 231 (271)
.+|.++.+...++ ++||+. ....+.+.++++ .++++++||++++++|+++|++++++
T Consensus 146 ------------------~~l~~~~~~~~~i--vly~~~~~~~~~~~~~~l~--~~~~~~~pv~vv~~~t~~~E~i~~~t 203 (246)
T PRK05765 146 ------------------HRVTKAAEADFVI--VFYNPINENLLIEVMDIVS--KHRKPNTPVGLVKSAYRNNENVVITT 203 (246)
T ss_pred ------------------HHHHHHhcCCeEE--EEEcccchhHHHHHHHHHH--hcCCCCCEEEEEEeCCCCCeEEEEEE
Confidence 1233333322232 556652 222222333333 48888999999999999999999999
Q ss_pred ccchhhc--cCCCCceEEEEeccCCcch
Q psy11146 232 LSNMTET--DMGKPLHSLIIVGNIHPVE 257 (271)
Q Consensus 232 l~~l~~~--~~~~~~~sliivg~~~~~~ 257 (271)
|+++.+. ..+.+ ++++||+....+
T Consensus 204 L~~l~~~~~~~~~~--~~iiVg~~~~~~ 229 (246)
T PRK05765 204 LSSWKEHMDEIGMT--TTMIIGNSLTYS 229 (246)
T ss_pred HHHhhhhhhcCCCc--eEEEECCcccEE
Confidence 9998643 33344 999999865544
No 19
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=100.00 E-value=3.7e-35 Score=243.79 Aligned_cols=205 Identities=17% Similarity=0.221 Sum_probs=150.9
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhcCcce-eecchhhHHHHHHHHHHhcCCCCEE
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKDI-IIADREMVESASDVILHNADVEDVA 79 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~~~~v-~~~~~~~~~~~~~~i~~~~~~~~V~ 79 (271)
||++||+||||+++||.+|.++|++||+|++. ++. .+.+..+..++. ..... ...+..+.+.+..++++|+
T Consensus 1 ~I~vVGiGp~~~~~Lt~~A~~~I~~A~vV~G~--kr~-----L~~~~~~~~~~~~~~~~~-~~~~~l~~i~~~~~g~~v~ 72 (210)
T COG2241 1 MITVVGIGPGGPEGLTLAAIEAIRRADVVAGS--KRH-----LELLPPLIKAERIIWPYP-FDAESLEEILAERKGRDVV 72 (210)
T ss_pred CEEEEEeCCCChhhhcHHHHHHHHhCCEEeec--HHH-----HHhhhccccceEEEeccc-cchHHHHHHHHHhCCCCeE
Confidence 89999999999999999999999999999984 221 444444443332 22222 2222345565554469999
Q ss_pred EEecCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHHHH-HHcCCccccccceeEEeeecCCCCCCchhhHHHhhhccCc
Q psy11146 80 LLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAA-GCCGLQLYNFGETVSIPFWTESWKPDSFYDKIVENKSRGL 158 (271)
Q Consensus 80 ~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~a~-a~~g~~l~~~~~~v~i~~~~~~~~~~~~~~~i~~~~~~~~ 158 (271)
+|++|||++|+-+..+... ....+++|||||||+|++ |++|++|++. .+.|.|+++.+. +......+.
T Consensus 73 VLasGDP~f~G~g~~l~~~--~~~~~v~iIPgiSS~q~a~ARlg~~~~~~------~~islHgr~~~~---l~~~~~~~~ 141 (210)
T COG2241 73 VLASGDPLFSGVGRLLRRK--FSCEEVEIIPGISSVQLAAARLGWPLQDT------EVISLHGRPVEL---LRPLLENGR 141 (210)
T ss_pred EEecCCcchhhhHHHHHHh--cCccceEEecChhHHHHHHHHhCCChHHe------EEEEecCCCHHH---HHHHHhCCc
Confidence 9999999999998776544 344789999999999965 9999999986 356778877653 333332333
Q ss_pred ceeeeecccCCccchHHHhhcccccCCeeeccHHHHHHHHHHhhhcCCCCCCCCeEEEEeccCCCCeEEEEeeccchhhc
Q psy11146 159 HTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATSLSNMTET 238 (271)
Q Consensus 159 ~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~ 238 (271)
..+++.|.. ..|+++++.|.+ .|++ +++++|+||||+++||++.++++++...
T Consensus 142 ~~vil~~~~---------------------~~P~~IA~~L~~-----~G~~-~~~~~VlE~L~~~~Eri~~~~~~~~~~~ 194 (210)
T COG2241 142 RLVILTPDD---------------------FGPAEIAKLLTE-----NGIG-DSRVTVLENLGYPDERITDGTAEDIAAE 194 (210)
T ss_pred eEEEeCCCC---------------------CCHHHHHHHHHh-----CCCC-CceEEEEcccCCCchhhhcCchhhhccc
Confidence 333333321 368999999999 7887 8999999999999999999999998876
Q ss_pred cCCCCceEEEEeccC
Q psy11146 239 DMGKPLHSLIIVGNI 253 (271)
Q Consensus 239 ~~~~~~~sliivg~~ 253 (271)
++++. +++++.+.
T Consensus 195 ~fsdl--nVv~v~~~ 207 (210)
T COG2241 195 EFSDL--NVVAVEKR 207 (210)
T ss_pred ccCCc--eEEEEEcc
Confidence 66443 77777654
No 20
>PRK05787 cobalt-precorrin-6Y C(5)-methyltransferase; Validated
Probab=100.00 E-value=3.5e-34 Score=242.43 Aligned_cols=205 Identities=21% Similarity=0.295 Sum_probs=144.4
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhc-Cc-ceeecchhhHHHHHHHHHHhcCC-CC
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFY-GK-DIIIADREMVESASDVILHNADV-ED 77 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~-~~-~v~~~~~~~~~~~~~~i~~~~~~-~~ 77 (271)
|||+||+|||||++||+||+++|++||+|+++. +. .+.+..+. ++ .+.... .++..+.+. ...+ ++
T Consensus 1 ~l~vVG~GpG~~~~lT~~a~~~l~~advv~~~~--~~-----~~~~~~~~~~~~~~~~~~---~~~~~~~i~-~~~~g~~ 69 (210)
T PRK05787 1 MIYIVGIGPGDPEYLTLKALEAIRKADVVVGSK--RV-----LELFPELIDGEAFVLTAG---LRDLLEWLE-LAAKGKN 69 (210)
T ss_pred CEEEEEeCCCChHHhhHHHHHHHHhCCEEEEcH--hH-----HHHHHHhccCccEEecCC---HHHHHHHHH-HhhCCCc
Confidence 899999999999999999999999999999852 22 55565554 22 222222 233334443 3444 89
Q ss_pred EEEEecCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHHHH-HHcCCccccccceeEEeeecCCCCCCchhhHHHhhhcc
Q psy11146 78 VALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAA-GCCGLQLYNFGETVSIPFWTESWKPDSFYDKIVENKSR 156 (271)
Q Consensus 78 V~~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~a~-a~~g~~l~~~~~~v~i~~~~~~~~~~~~~~~i~~~~~~ 156 (271)
|+++++|||++|+.+..+... ...+++++++|||||+|++ |++|+||+++ .+.+.|+++.+. +.+....+.
T Consensus 70 V~~l~~GDP~~~~~~~~~~~~-~~~~~~veviPGiSs~~aaaa~~g~~l~~~------~~is~~~~~~~~-~~l~~~~~~ 141 (210)
T PRK05787 70 VVVLSTGDPLFSGLGKLLKVR-RAVAEDVEVIPGISSVQYAAARLGIDMNDV------VFTTSHGRGPNF-EELEDLLKN 141 (210)
T ss_pred EEEEecCCccccccHHHHHHH-hccCCCeEEEcCHHHHHHHHHHhCCCHHHc------EEEeecCCCcch-HHHHHHHHc
Confidence 999999999999966554433 3345899999999999976 9999999975 244567765442 233333333
Q ss_pred CcceeeeecccCCccchHHHhhcccccCCeeeccHHHHHHHHHHhhhcCCCCCCCCeEEEEeccCCCCeEEEEeeccchh
Q psy11146 157 GLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATSLSNMT 236 (271)
Q Consensus 157 ~~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~v~v~~~l~~~~E~i~~~~l~~l~ 236 (271)
+..++++.+.. ..+.++++.|.+ .+ ++++++++++|+|+++|+++.++++++.
T Consensus 142 ~~~~v~l~~~~---------------------~~~~~i~~~L~~-----~g-~~~~~~~v~~~l~~~~E~i~~~~l~~~~ 194 (210)
T PRK05787 142 GRKVIMLPDPR---------------------FGPKEIAAELLE-----RG-KLERRIVVGENLSYPDERIHKLTLSEIE 194 (210)
T ss_pred CCeEEEEcCCC---------------------CCHHHHHHHHHh-----CC-CCCcEEEEEEeCCCCCeEEEeCCHHHHh
Confidence 44444333221 145677777776 45 4588999999999999999999998876
Q ss_pred hccCCCCceEEEEeccC
Q psy11146 237 ETDMGKPLHSLIIVGNI 253 (271)
Q Consensus 237 ~~~~~~~~~sliivg~~ 253 (271)
+.+ .+|++++++++.
T Consensus 195 ~~~--~~~~s~v~v~~~ 209 (210)
T PRK05787 195 PLE--FSDMSVVVILDE 209 (210)
T ss_pred hcc--cCCcEEEEEecC
Confidence 544 456799988753
No 21
>PRK05990 precorrin-2 C(20)-methyltransferase; Reviewed
Probab=100.00 E-value=4.2e-34 Score=246.33 Aligned_cols=207 Identities=20% Similarity=0.304 Sum_probs=138.0
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhc--Ccce---ee---cc------------hh
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFY--GKDI---II---AD------------RE 60 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~--~~~v---~~---~~------------~~ 60 (271)
.||+||+||||||+||+||+++|++||+|+++...+..... .++++.+. ++++ .+ .+ ..
T Consensus 4 ~l~~VG~GPGdp~LlTlkA~~~L~~advi~~~~~~~~~~~a-~~i~~~~~~~~~~~~~~~~pm~~~~~~~~~~~~~~~~~ 82 (241)
T PRK05990 4 RLIGLGVGPGDPELLTLKALRLLQAAPVVAYFVAKGKKGNA-FGIVEAHLSPGQTLLPLVYPVTTEILPPPLCYETVIAD 82 (241)
T ss_pred eEEEEeCCCCChHHhhHHHHHHHhhCCEEEEECCCCCcchH-HHHHHHHcCCCceEEEeecCCccccccccchhhhHHHH
Confidence 48999999999999999999999999999998542110012 56666554 2222 11 11 12
Q ss_pred hHHHHHHHHHHhcCC-CCEEEEecCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHHHH-HHcCCccccccceeEEeeec
Q psy11146 61 MVESASDVILHNADV-EDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAA-GCCGLQLYNFGETVSIPFWT 138 (271)
Q Consensus 61 ~~~~~~~~i~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~a~-a~~g~~l~~~~~~v~i~~~~ 138 (271)
.|++.++.+.+++++ ++|++|++|||++||++.++...+ ..++++||||||||++++ |++|+||+..++.+++ .+
T Consensus 83 ~~~~~~~~i~~~~~~G~~Vv~L~~GDP~iyst~~~l~~~l-~~~i~~evIPGISS~~aaaA~~gipL~~~~~~~~i--~~ 159 (241)
T PRK05990 83 FYDTSAEAVAAHLDAGRDVAVICEGDPFFYGSYMYLHDRL-APRYETEVIPGVCSMLGCWSVLGAPLVYRNQSLSV--LS 159 (241)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEeCCCcHHHhHHHHHHHHH-hcCCCEEEECcHHHHHHHHHHhCCCeEcCCeEEEE--Ec
Confidence 345566668888877 899999999999999998886655 457999999999999976 9999999854444443 33
Q ss_pred CCCCCCchhhHHHhhhccCcceeeeecccCCccchHHHhhcccccCCeeecc----HHHHHHHHHHhhhcCCCCCCCCeE
Q psy11146 139 ESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMS----VSQAAQQLVEITKTKPGLSTADLA 214 (271)
Q Consensus 139 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~----~~~~~~~L~~~~~~~~~~~~~~~v 214 (271)
++. +. +.+.+. +.. .++++.|+ ..++++.|.+ .+++ + ++
T Consensus 160 ~~~-~~---~~l~~~----------------------l~~----~~~~vv~k~~~~~~~i~~~L~~-----~g~~-~-~~ 202 (241)
T PRK05990 160 GVL-PE---EELRRR----------------------LAD----ADAAVIMKLGRNLDKVRRVLAA-----LGLL-D-RA 202 (241)
T ss_pred CCC-Ch---HHHHHH----------------------HhC----CCCEEEEEeCCcHHHHHHHHHH-----cCCC-C-CE
Confidence 321 11 111111 111 11122232 3345555544 4554 2 56
Q ss_pred EEEeccCCCCeEEEEeeccchhhccCCCCceEEEEecc
Q psy11146 215 VGIARVGSETQHIVATSLSNMTETDMGKPLHSLIIVGN 252 (271)
Q Consensus 215 ~v~~~l~~~~E~i~~~~l~~l~~~~~~~~~~sliivg~ 252 (271)
++++|+|+++|+++. ..++.+ ...+|+|++|+.+
T Consensus 203 ~~v~~~~~~~E~i~~--~~~~~~--~~~~Y~s~iiv~~ 236 (241)
T PRK05990 203 LYVERATMANQRIVP--LAEVDP--MASPYFSLILVPG 236 (241)
T ss_pred EEEEECCCCCeEEEE--ccccCC--CCCCceEEEEEec
Confidence 777999999999985 344433 2468999999976
No 22
>TIGR01467 cobI_cbiL precorrin-2 C20-methyltransferase. This model represents precorrin-2 C20-methyltransferase, one of several closely related S-adenosylmethionine-dependent methyltransferases involved in cobalamin (vitamin B12) biosynthesis.
Probab=100.00 E-value=1.4e-33 Score=241.99 Aligned_cols=210 Identities=24% Similarity=0.294 Sum_probs=143.4
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccc-cCchhHhhhhcC---cceee------cch----hhHHHHH
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILI-DDIIDDMKSFYG---KDIII------ADR----EMVESAS 66 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~-~~~~~~l~~~~~---~~v~~------~~~----~~~~~~~ 66 (271)
|||+||+|||||++||+||+++|++||+|+++.+..-.. .. .+.+..+.+ +++.. .++ ..+++.+
T Consensus 2 ~i~iVG~GpG~~~~lT~~a~~~l~~advV~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (230)
T TIGR01467 2 KLYGVGVGPGDPELITVKALEALRSADVIAVPASKKGRESLA-RKIVEDYLKPNDTRILELVFPMTKDRDELEKAWDEAA 80 (230)
T ss_pred EEEEEEecCCCcHHHHHHHHHHHhhCCEEEEeCCCCCCcchH-HHHHHHhcCccCceEEEEeccccCChHHHHHHHHHHH
Confidence 699999999999999999999999999999986532100 11 445455432 33321 111 1344555
Q ss_pred HHHHHhcCC-CCEEEEecCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHHHH-HHcCCccccccceeEEeeecCCCCCC
Q psy11146 67 DVILHNADV-EDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAA-GCCGLQLYNFGETVSIPFWTESWKPD 144 (271)
Q Consensus 67 ~~i~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~a~-a~~g~~l~~~~~~v~i~~~~~~~~~~ 144 (271)
+.+.+.+++ ++|++|++|||++|+++.++..++...+++++|+|||||++++ |++|+||++.+..++ +.+.|....
T Consensus 81 ~~i~~~~~~g~~Vv~l~~GDP~~y~~~~~l~~~~~~~~~~veviPGiSs~~~a~a~~g~~l~~~~~~~~--~~~~~~~~~ 158 (230)
T TIGR01467 81 EAVAAELEEGRDVAFLTLGDPSLYSTFSYLLQRLQGMGIEVEVVPGITSFAACASAAGLPLVEGDESLA--ILPATAGEA 158 (230)
T ss_pred HHHHHHHHCCCcEEEEeCCCCCcccCHHHHHHHHHHCCCcEEEeCChhHHHHHHHHhCCCcccCCceEE--EEeCCCCHH
Confidence 667777776 8999999999999999999887776668999999999999976 999999996434344 334443211
Q ss_pred chhhHHHhhhccCcceeeeecccCCccchHHHhhcccccCCeeecc---HHHHHHHHHHhhhcCCCCCCCCeEEEEeccC
Q psy11146 145 SFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMS---VSQAAQQLVEITKTKPGLSTADLAVGIARVG 221 (271)
Q Consensus 145 ~~~~~i~~~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~---~~~~~~~L~~~~~~~~~~~~~~~v~v~~~l~ 221 (271)
.+....+.+ .++ ++++. ..++++.|.+ .++ +.++++++|+|
T Consensus 159 ----~~~~~~~~~-~~v------------------------vil~~~~~~~~i~~~L~~-----~g~--~~~v~v~e~l~ 202 (230)
T TIGR01467 159 ----ELEKALAEF-DTV------------------------VLMKVGRNLPQIKEALAK-----LGR--LDAAVVVERAT 202 (230)
T ss_pred ----HHHHHhccC-CeE------------------------EEEecCCCHHHHHHHHHH-----cCC--cccEEEEEECC
Confidence 111222211 122 22322 2345555554 344 34799999999
Q ss_pred CCCeEEEEeeccchhhccCCCCceEEEEecc
Q psy11146 222 SETQHIVATSLSNMTETDMGKPLHSLIIVGN 252 (271)
Q Consensus 222 ~~~E~i~~~~l~~l~~~~~~~~~~sliivg~ 252 (271)
+|+|+++.+ +.++.+. ..+|+|++|+.+
T Consensus 203 ~~~E~i~~~-~~~~~~~--~~~y~s~~i~~~ 230 (230)
T TIGR01467 203 MPDEKIVDL-VREAIDD--ALPYFSTILVRR 230 (230)
T ss_pred CCCcEEEcc-ccccCCC--CCCeeEEEEecC
Confidence 999999987 6776332 457999999864
No 23
>TIGR01466 cobJ_cbiH precorrin-3B C17-methyltransferase. This model represents precorrin-3B C17-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-4 C11-methyltransferase, EC 2.1.1.133). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products. Members of this family may appear as fusion proteins with other enzymes of cobalamin biosynthesis.
Probab=100.00 E-value=4.1e-33 Score=240.43 Aligned_cols=217 Identities=18% Similarity=0.225 Sum_probs=144.2
Q ss_pred EEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhc-CcceeecchhhHHHHHHHHHHhcCC-CCEE
Q psy11146 2 FYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFY-GKDIIIADREMVESASDVILHNADV-EDVA 79 (271)
Q Consensus 2 l~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~i~~~~~~-~~V~ 79 (271)
||+||+|||||++||++|+++|++||+|+++.. . .+.++.+. ++++.........+..+.+.+.+.+ ++|+
T Consensus 1 l~iVG~GpG~~~~lT~~A~~~i~~AdvV~~~~~--~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vv 73 (239)
T TIGR01466 1 LYVVGIGPGAEELMTPEAKEALAEADVIVGYKT--Y-----LDLIEDLIPGKEVVTSGMREEIARAELAIELAAEGRTVA 73 (239)
T ss_pred CEEEEeCCCChHHHHHHHHHHHHhCCEEEECcc--H-----HHHHHhhCCCCEEEeCCChHHHHHHHHHHHHHhCCCCEE
Confidence 689999999999999999999999999998632 2 55666554 3443322222222333455565666 9999
Q ss_pred EEecCCCCCCCcHHHHHHHHhcC--CCCEEEEcCchHHHHH-HHcCCccc-cccceeEEeeecCCCCCCchhhHHHhh--
Q psy11146 80 LLVVGDPYGATTHTDLVLRARQS--NIPTKVVHNASILNAA-GCCGLQLY-NFGETVSIPFWTESWKPDSFYDKIVEN-- 153 (271)
Q Consensus 80 ~l~~GDP~~~~~~~~l~~~~~~~--~~~v~iiPGiSs~~a~-a~~g~~l~-~~~~~v~i~~~~~~~~~~~~~~~i~~~-- 153 (271)
+|++|||++|+++.++....... +++++++|||||+|++ |++|+||+ ++ .+.+.|++... ++.+..+
T Consensus 74 ~l~~GDP~~~~~~~~l~~~l~~~~~~~~v~viPGiSS~~aa~a~~g~p~~~~~------~~is~~~~~~~-~~~~~~~l~ 146 (239)
T TIGR01466 74 LVSSGDPGIYGMAALVFEALEKKGAEVDIEVIPGITAASAAASLLGAPLGHDF------CVISLSDLLTP-WPEIEKRLR 146 (239)
T ss_pred EEecCCCcccccHHHHHHHHHhcCCCCCEEEeCCccHHHHHHHHcCCCccccc------EEEECCCCCCC-chHHHHHHH
Confidence 99999999999988876554443 4699999999999976 99999995 43 23455542111 1122111
Q ss_pred -hccCcceeeeecccCCccchHHHhhcccccCCeeeccHHHHHHHHHHhhhcCCCCCCCCeEEEEeccCCCCeEEEEeec
Q psy11146 154 -KSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATSL 232 (271)
Q Consensus 154 -~~~~~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~v~v~~~l~~~~E~i~~~~l 232 (271)
...+..+++++..... ...+.+.++++.|.+ ..+.++++++++|+|+++|+++.+++
T Consensus 147 ~~~~~~~~~vl~~~~~~----------------~~~~~~~~i~~~L~~------~~~~~~~v~v~~~l~~~~E~i~~~~l 204 (239)
T TIGR01466 147 AAAEADFVIAIYNPRSK----------------RRPEQFRRAMEILLE------HRKPDTPVGIVRNAGREGEEVEITTL 204 (239)
T ss_pred HHhCCCcEEEEECCccc----------------chhhhHHHHHHHHHh------cCCCCCEEEEEEECCCCCeEEEEEEH
Confidence 1111222333221100 001233445555554 44558899999999999999999999
Q ss_pred cchhhccCCCCceEEEEeccCCcc
Q psy11146 233 SNMTETDMGKPLHSLIIVGNIHPV 256 (271)
Q Consensus 233 ~~l~~~~~~~~~~sliivg~~~~~ 256 (271)
+++.+.++ +|++++++++....
T Consensus 205 ~~l~~~~~--~~~s~iii~~~~~~ 226 (239)
T TIGR01466 205 AELDEELI--DMLTTVIIGNSETY 226 (239)
T ss_pred HHHhhcCC--CCCeEEEECCchhe
Confidence 99976544 56699999976543
No 24
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=100.00 E-value=7.3e-33 Score=234.05 Aligned_cols=197 Identities=25% Similarity=0.306 Sum_probs=137.8
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhc------CcceeecchhhHHHHHHHH--HHh
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFY------GKDIIIADREMVESASDVI--LHN 72 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~------~~~v~~~~~~~~~~~~~~i--~~~ 72 (271)
|||+||+|||||++||++|+++|++||+|+++.. . .+.+..+. .+... .....+++..+.+ .+.
T Consensus 1 ~l~iVG~GpG~~~~lT~~a~~~l~~advv~~~~r--~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~ 72 (210)
T PF00590_consen 1 KLYIVGLGPGDPDLLTLRALEALKNADVVIGPER--A-----LEIVRDLLPEIFPMGKDRE-SLEESYDEIAEIIEAIEA 72 (210)
T ss_dssp EEEEEEEBSSSGGGSBHHHHHHHHHSSEEEEETT--C-----HHHHHHHHHTEETTSSEEE-EEHHHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCCHHHHHHHHHHHHHhCCccccccc--c-----hHHHHhhcccccccccccc-chhhhhhHHHHHHHHHHH
Confidence 7999999999999999999999999999999742 2 55565542 11111 1122455555556 677
Q ss_pred cCC-CCEEEEecCCCCCCCcHHHHHHHHhc--CCCCEEEEcCchHHHHH-HHcCCccccccceeEEeeecCCCCCCc-hh
Q psy11146 73 ADV-EDVALLVVGDPYGATTHTDLVLRARQ--SNIPTKVVHNASILNAA-GCCGLQLYNFGETVSIPFWTESWKPDS-FY 147 (271)
Q Consensus 73 ~~~-~~V~~l~~GDP~~~~~~~~l~~~~~~--~~~~v~iiPGiSs~~a~-a~~g~~l~~~~~~v~i~~~~~~~~~~~-~~ 147 (271)
+.+ ++|++|++|||++|+++.++..++.. .|++++++|||||++++ |++|+||++++....+. .++.+ ..
T Consensus 73 ~~~g~~V~~l~~GDP~~~~~~~~l~~~l~~~~~gi~v~iiPGiSs~~~a~a~~g~~~~~~~~~~~~~-----~~~~~~~~ 147 (210)
T PF00590_consen 73 AKEGKDVVVLVSGDPLFFSTGSYLVRALRAEERGIEVEIIPGISSFQAAAARLGIPLTDGGFISLHG-----LRDLDTER 147 (210)
T ss_dssp HHTTSEEEEEESBSTTSSSSHHHHHHHHHHHHTTCEEEEE--TTHHHHHHHHCTSTSSBTTTBEEEE-----TSSSSHHH
T ss_pred HhccCCEEEeCCCCCCcccHHHHHHHHHHhhcCCCceEEEecCcHHHHHHHHHcCCcccCcEEEEEE-----ecccccch
Confidence 777 88999999999999999999866666 89999999999999976 99999999875443321 02211 12
Q ss_pred hHHHhhhccCcceeeeecccCCccchHHHhhcccccCCeeeccHHHHHHHHHHhhhcCCCCCCCCeEEEEeccCCCCeEE
Q psy11146 148 DKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHI 227 (271)
Q Consensus 148 ~~i~~~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~v~v~~~l~~~~E~i 227 (271)
.....+.....++++++... ..+.++++.|.+. .+++++++++++++|+++|+|
T Consensus 148 ~~~l~~~~~~~~~~vil~~~---------------------~~~~~i~~~L~~~-----~~~~~~~v~v~~~lg~~~E~i 201 (210)
T PF00590_consen 148 EKLLENLLANGDTLVILTDP---------------------RRLAEIAELLLER-----LYPPDTPVAVGERLGYPDERI 201 (210)
T ss_dssp HHHHHHHHTTTSEEEEEESG---------------------CCHHHHHHHHHHH-----SHTTTSEEEEEESTTSTTEEE
T ss_pred HHHHHHHHhCCCEEEEEccC---------------------chHHHHHHHHHhh-----CCCCCcEEEHHHhcCCCCCEE
Confidence 22222222233444433221 1355677777762 234578999999999999999
Q ss_pred EEeeccchh
Q psy11146 228 VATSLSNMT 236 (271)
Q Consensus 228 ~~~~l~~l~ 236 (271)
++++++|+.
T Consensus 202 ~~~tl~ela 210 (210)
T PF00590_consen 202 FRGTLEELA 210 (210)
T ss_dssp EEEEHHHHH
T ss_pred EEeEHHHcC
Confidence 999999863
No 25
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=100.00 E-value=8.7e-33 Score=228.68 Aligned_cols=215 Identities=23% Similarity=0.267 Sum_probs=154.7
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhcCcceeecchhhHHHHHHHHHHhcCC-CCEE
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKDIIIADREMVESASDVILHNADV-EDVA 79 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~i~~~~~~-~~V~ 79 (271)
|||+||+|||+++++|++|.++|++||+|++ |+.. .+.++...+|+++..+....-+.+++.++.+++ ++|+
T Consensus 4 ~L~VVGiGPG~~~~mT~~A~~al~~ad~ivG--Y~~Y-----~d~i~l~~~k~v~~s~m~~Ei~Ra~~AielA~~G~~Va 76 (249)
T COG1010 4 KLYVVGIGPGDPELMTPEARRALEEADVIVG--YTTY-----LDLIELRPGKEVIRSGMREEIERAKEAIELAAEGRDVA 76 (249)
T ss_pred eEEEEEeCCCChhhCCHHHHHHHHhCCEEEe--cHHH-----HHHHhcCCCCEEEeCCcHhHHHHHHHHHHHHhcCCeEE
Confidence 6999999999999999999999999999996 2222 556663347777654322223456778888888 8999
Q ss_pred EEecCCCCCCCcHHHHHHHHhc---CCCCEEEEcCchHHHHH-HHcCCccc-cccceeEEeeecCCCCCCchhhHHHhhh
Q psy11146 80 LLVVGDPYGATTHTDLVLRARQ---SNIPTKVVHNASILNAA-GCCGLQLY-NFGETVSIPFWTESWKPDSFYDKIVENK 154 (271)
Q Consensus 80 ~l~~GDP~~~~~~~~l~~~~~~---~~~~v~iiPGiSs~~a~-a~~g~~l~-~~~~~v~i~~~~~~~~~~~~~~~i~~~~ 154 (271)
++++|||.+|+........+.+ .+++++|+||||+++|+ |++|-|+. || -++| .|++.+|++ .|.+.+
T Consensus 77 lVSsGDpgVYgMA~lv~E~~~~~~~~~v~veVvPGvTA~~aaAa~lGAPL~hDF-~~IS---LSDlLtPwe---~IekRl 149 (249)
T COG1010 77 LVSSGDPGVYGMAGLVLEAAEEEGWYDVDVEVVPGVTAALAAAARLGAPLGHDF-CVIS---LSDLLTPWE---VIEKRL 149 (249)
T ss_pred EEeCCCccHHHhHHHHHHHHHhcCCCCccEEEeCChHHHHHHHHHhCCCcccce-EEEE---hHhcCCcHH---HHHHHH
Confidence 9999999999987665444333 46899999999999976 99999996 76 2333 355666654 444432
Q ss_pred ---ccCcceeeeecccCCccchHHHhhcccccCCeeeccHHHHHHHHHHhhhcCCCCCCCCeEEEEeccCCCCeEEEEee
Q psy11146 155 ---SRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATS 231 (271)
Q Consensus 155 ---~~~~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~v~v~~~l~~~~E~i~~~~ 231 (271)
...+.+.+++++..+. +-....+..+.|++ ..++++||.+++|++.++|.+...+
T Consensus 150 ~aAA~adfVi~~YNP~s~~----------------R~~~~~~a~eil~~------~r~~~tpVgivrnagR~~e~v~itt 207 (249)
T COG1010 150 RAAAEADFVIALYNPISKR----------------RPEQLGRAFEILRE------HRSPDTPVGIVRNAGREGEEVRITT 207 (249)
T ss_pred HHHhhCCEEEEEECCcccc----------------chHHHHHHHHHHHH------hcCCCCcEEEEecCCCCCceEEEEE
Confidence 2334444444432211 11233455666665 5678999999999999999999999
Q ss_pred ccchhh-ccCCCCceEEEEeccC
Q psy11146 232 LSNMTE-TDMGKPLHSLIIVGNI 253 (271)
Q Consensus 232 l~~l~~-~~~~~~~~sliivg~~ 253 (271)
|+++.+ .. ..+.+++|||+.
T Consensus 208 L~~l~~~~~--iDM~T~vIIGns 228 (249)
T COG1010 208 LGDLDEAEE--IDMRTIVIIGNS 228 (249)
T ss_pred hHHhccccc--ccceEEEEEcCC
Confidence 999984 33 346699999975
No 26
>TIGR02467 CbiE precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit. This model recognizes the CbiE methylase which is responsible, in part (along with CbiT), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiT subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=100.00 E-value=9e-33 Score=232.82 Aligned_cols=201 Identities=17% Similarity=0.175 Sum_probs=140.3
Q ss_pred EEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhcCcc-eeecchhhHHHHHHHHHHhcCCCCEEEEe
Q psy11146 4 VVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKD-IIIADREMVESASDVILHNADVEDVALLV 82 (271)
Q Consensus 4 iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~~~~-v~~~~~~~~~~~~~~i~~~~~~~~V~~l~ 82 (271)
+||+|||||++||+||+++|++||+|+++. +. .+.+..+.+++ ........+++..+.+.+.+..++|++|+
T Consensus 1 iVG~GpG~~~~lT~~a~~~L~~advv~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~vv~l~ 73 (204)
T TIGR02467 1 VVGIGPGGPELLTPAAIEAIRKADLVVGGE--RH-----LELLAELIGEKREIILTYKDLDELLEFIAATRKEKRVVVLA 73 (204)
T ss_pred CEEeCCCChhhcCHHHHHHHHhCCEEEech--hh-----HHHHhhhcCCceEeccCcCCHHHHHHHHHHhcCCCCEEEEe
Confidence 699999999999999999999999999962 22 45555544332 22222224566666676655468999999
Q ss_pred cCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHHHH-HHcCCccccccceeEEeeecCCCCCCchhhHHHhhhccCccee
Q psy11146 83 VGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAA-GCCGLQLYNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTL 161 (271)
Q Consensus 83 ~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~a~-a~~g~~l~~~~~~v~i~~~~~~~~~~~~~~~i~~~~~~~~~~~ 161 (271)
+|||++|+++.++.... ...+++++|||||+|++ |++|+||+++ .+.+.|+++.+.. .......+..++
T Consensus 74 ~GDP~~~~~~~~l~~~~--~~~~v~iiPGiSs~~~a~a~~g~~l~~~------~~is~~~~~~~~~--~~~~l~~~~~~v 143 (204)
T TIGR02467 74 SGDPLFYGIGRTLAERL--GKERLEIIPGISSVQYAFARLGLPWQDA------VVISLHGRELDEL--LLALLRGHRKVA 143 (204)
T ss_pred cCCCcccccHHHHHHhC--CCCcEEEeCChHHHHHHHHHcCCChhhC------eEEEeeCCCCcHH--HHHHHhcCCcEE
Confidence 99999999998876553 33589999999999976 9999999865 2445566543210 111122222222
Q ss_pred eeecccCCccchHHHhhcccccCCeeeccHHHHHHHHHHhhhcCCCCCCCCeEEEEeccCCCCeEEEEeeccchhhccCC
Q psy11146 162 CLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATSLSNMTETDMG 241 (271)
Q Consensus 162 ~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~~ 241 (271)
++.+.. ..+.++++.|.+ .++++.+++++++++|+++|+++.++++++.+..+.
T Consensus 144 vl~~~~---------------------~~~~~i~~~L~~-----~g~~~~~~v~v~~~l~~~~E~i~~~tl~el~~~~~~ 197 (204)
T TIGR02467 144 VLTDPR---------------------NGPAEIARELIE-----LGIGGSYELTVGENLGYEDERITEGTLEEIAAAQFD 197 (204)
T ss_pred EEeCCC---------------------CCHHHHHHHHHH-----CCCCCCeEEEEEcccCCCCeEEEeCCHHHHhhcccC
Confidence 222110 146778888877 578766799999999999999999999999776444
Q ss_pred CCceEE
Q psy11146 242 KPLHSL 247 (271)
Q Consensus 242 ~~~~sl 247 (271)
..++++
T Consensus 198 ~~~~~~ 203 (204)
T TIGR02467 198 FSPLLV 203 (204)
T ss_pred Ccccee
Confidence 444454
No 27
>PRK05576 cobalt-precorrin-2 C(20)-methyltransferase; Validated
Probab=100.00 E-value=2.3e-32 Score=234.25 Aligned_cols=209 Identities=22% Similarity=0.254 Sum_probs=140.6
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCccccc-ccCchhHhhhhcC-c-ceeec------c----hhhHHHHHH
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSIL-IDDIIDDMKSFYG-K-DIIIA------D----REMVESASD 67 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~-~~~~~~~l~~~~~-~-~v~~~------~----~~~~~~~~~ 67 (271)
|||+||+|||||++||+||+++|++||+|++++++... ... .+.+..+.+ + +++.. + ...|++.++
T Consensus 3 ~l~vVG~GpG~~~~lT~~a~~~l~~advV~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (229)
T PRK05576 3 KLYGIGLGPGDPELLTVKAARILEEADVVYAPASRKGGGSLA-LNIVRPYLKEETEIVELHFPMSKDEEEKEAVWKENAE 81 (229)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHhcCCEEEEECCCCCchhHH-HHHHHHhcCCCCEEEEeeCCCCCChHHHHHHHHHHHH
Confidence 69999999999999999999999999999998553210 011 334555542 2 22211 1 123455666
Q ss_pred HHHHhcCC-CCEEEEecCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHHHH-HHcCCccccccceeEEeeecCCCCCCc
Q psy11146 68 VILHNADV-EDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAA-GCCGLQLYNFGETVSIPFWTESWKPDS 145 (271)
Q Consensus 68 ~i~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~a~-a~~g~~l~~~~~~v~i~~~~~~~~~~~ 145 (271)
.+.+.+.+ ++|++|++|||++|+++.++...+...+++++|+|||||+|++ |++|+||+..+..+. +.+.|. .
T Consensus 82 ~i~~~~~~g~~V~~l~~GDP~~y~~~~~l~~~~~~~~~~v~viPGiSs~~~a~a~~g~~l~~~~~~~~--iis~~~-~-- 156 (229)
T PRK05576 82 EIAAEAEEGKNVAFITLGDPNLYSTFSHLLEYLKCHDIEVETVPGISSFTAIASRAGVPLAMGDESLA--IIPATR-E-- 156 (229)
T ss_pred HHHHHHHcCCcEEEEeCcCccccccHHHHHHHHHhCCCCEEEeCChhHHHHHHHHcCCCcccCCceEE--EEECCC-H--
Confidence 67776666 8999999999999999999987776668999999999999976 999999994433333 344443 1
Q ss_pred hhhHHHhhhccCcceeeeecccCCccchHHHhhcccccCCeeeccHHHHHHHHHHhhhcCCCCCCCCeEEEEeccCCCCe
Q psy11146 146 FYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQ 225 (271)
Q Consensus 146 ~~~~i~~~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~v~v~~~l~~~~E 225 (271)
+.+......+ .++ ++|+.....+.+.+++. .+. .++++++|+|+|+|
T Consensus 157 --~~l~~~l~~~-~~~-------------------------vl~~~~~~~~~i~~~l~--~~~---~~v~v~e~l~~~~E 203 (229)
T PRK05576 157 --ALIEQALTDF-DSV-------------------------VLMKVYKNFALIEELLE--EGY---LDALYVRRAYMEGE 203 (229)
T ss_pred --HHHHHHhhcC-CEE-------------------------EEEecCCCHHHHHHHHH--hcC---CCEEEEEECCCCCe
Confidence 1122222111 223 33333222222333332 122 28999999999999
Q ss_pred EEEEeeccchhhccCCCCceEEEEecc
Q psy11146 226 HIVATSLSNMTETDMGKPLHSLIIVGN 252 (271)
Q Consensus 226 ~i~~~~l~~l~~~~~~~~~~sliivg~ 252 (271)
+++.++..++. + .+|+|++++.+
T Consensus 204 ~i~~~~~~~~~--~--~~y~s~ii~~~ 226 (229)
T PRK05576 204 QILRRLEEILD--D--LDYFSTIIANR 226 (229)
T ss_pred EEEccccccCC--C--CCeeEEEEEec
Confidence 99998776652 2 58999999863
No 28
>PRK05991 precorrin-3B C17-methyltransferase; Provisional
Probab=100.00 E-value=2.5e-32 Score=236.77 Aligned_cols=215 Identities=16% Similarity=0.182 Sum_probs=139.7
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhcCccee-ecchhhHHHHHHHHHHhcCC-CCE
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKDII-IADREMVESASDVILHNADV-EDV 78 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~~~~v~-~~~~~~~~~~~~~i~~~~~~-~~V 78 (271)
|||+||+|||||++||++|+++|++||+|+++. +. .+.+....+.... ..+++..++. .++++.+.+ ++|
T Consensus 4 ~l~iVG~GpG~p~~lT~~a~~~l~~AdvV~~~~--~~-----l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~V 75 (250)
T PRK05991 4 RLFVIGTGPGNPEQMTPEALAAVEAATDFFGYG--PY-----LDRLPLRADQLRHASDNREELDRA-GAALAMAAAGANV 75 (250)
T ss_pred eEEEEEeCCCChhhhhHHHHHHHHhCCEEEEcH--HH-----HHhhhccccccccCCCCHHHHHHH-HHHHHHHHCCCeE
Confidence 589999999999999999999999999999851 11 2222211111111 1222222222 223444444 899
Q ss_pred EEEecCCCCCCCcHHHHHHHHhc-----CCCCEEEEcCchHHHHH-HHcCCccc-cccceeEEeeecCCCCCCchhhHHH
Q psy11146 79 ALLVVGDPYGATTHTDLVLRARQ-----SNIPTKVVHNASILNAA-GCCGLQLY-NFGETVSIPFWTESWKPDSFYDKIV 151 (271)
Q Consensus 79 ~~l~~GDP~~~~~~~~l~~~~~~-----~~~~v~iiPGiSs~~a~-a~~g~~l~-~~~~~v~i~~~~~~~~~~~~~~~i~ 151 (271)
++|++|||++|+++.++...... .+++++|+|||||+|++ |++|+||+ ++ .+.+.|.... .++.+.
T Consensus 76 v~l~~GDP~~~~~~~~l~~~~~~g~~~~~~~~v~vvPGISS~~aa~a~~g~p~~~~~------~~~s~~~~~~-~~~~l~ 148 (250)
T PRK05991 76 CVVSGGDPGVFAMAAAVCEAIENGPAAWRAVDLTIVPGVTAMLAVAARIGAPLGHDF------CAISLSDNLK-PWELIE 148 (250)
T ss_pred EEEeCCCchhhhhHHHHHHHHHhcccccCCceEEEECChHHHHHHHHHhCCCCCCCC------EEeecccCCC-CHHHHH
Confidence 99999999999999887655432 45899999999999976 99999996 43 2344454222 122232
Q ss_pred hhh---ccCcceeeeecccCCccchHHHhhcccccCCeeeccHHHHHHHHHHhhhcCCCCCCCCeEEEEeccCCCCeEEE
Q psy11146 152 ENK---SRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIV 228 (271)
Q Consensus 152 ~~~---~~~~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~v~v~~~l~~~~E~i~ 228 (271)
+++ .....++++++.... ...++..+.++.|.+ ++.++.++++++|+|+++|+++
T Consensus 149 ~~l~~~~~~~~~~vl~~~~~~----------------~~p~~l~~~~~~L~~------~~~~~~~v~v~~~lg~~dE~i~ 206 (250)
T PRK05991 149 KRLRLAAEAGFVIALYNPISR----------------ARPWQLGEAFDLLRE------HLPATVPVIFGRAAGRPDERIA 206 (250)
T ss_pred HHHHhhcCCCeEEEEECCccc----------------cchhhHHHHHHHHHh------cCCCCCEEEEEEeCCCCCcEEE
Confidence 222 122333444432100 001233344455554 5667889999999999999999
Q ss_pred EeeccchhhccCCCCceEEEEeccCC
Q psy11146 229 ATSLSNMTETDMGKPLHSLIIVGNIH 254 (271)
Q Consensus 229 ~~~l~~l~~~~~~~~~~sliivg~~~ 254 (271)
.++++++.+.++ +|++++++|+..
T Consensus 207 ~~~l~el~~~~~--~~~s~vivg~~~ 230 (250)
T PRK05991 207 VAPLAEADASMA--DMATCVIIGSAE 230 (250)
T ss_pred EEEHHHhhhhcc--CCCeEEEECCCc
Confidence 999999976544 577999999764
No 29
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=100.00 E-value=7.5e-32 Score=236.35 Aligned_cols=199 Identities=18% Similarity=0.245 Sum_probs=153.4
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhh-cCcceeecchhhHHHHHHHHHHhcCC-CCE
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSF-YGKDIIIADREMVESASDVILHNADV-EDV 78 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~-~~~~v~~~~~~~~~~~~~~i~~~~~~-~~V 78 (271)
+||+||+|||||++||+||+++|++||+|+|+++..- ...++.+ .+++++....+++++.++.+++.+.+ ++|
T Consensus 13 ~Ly~VgtgiGn~edITlRAl~~L~~aDvI~~edtr~t-----~~ll~~~~i~~~~~~~~~~~~~~~~~~i~~~l~~G~~V 87 (287)
T PRK14994 13 QLYIVPTPIGNLADITQRALEVLQAVDLIAAEDTRHT-----GLLLQHFAINARLFALHDHNEQQKAETLLAKLQEGQNI 87 (287)
T ss_pred eEEEEeCCCCChHHhhHHHHHHHHhCCEEEEeCCcch-----HHHHhhcCCCCEEEEccCCCHHHHHHHHHHHHHCCCeE
Confidence 5999999999999999999999999999999866311 2334333 24555444444677788889988888 999
Q ss_pred EEEe-cCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHHHH-HHcCCccccccceeEEeeecCCCCCCchhhHHHhhhcc
Q psy11146 79 ALLV-VGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAA-GCCGLQLYNFGETVSIPFWTESWKPDSFYDKIVENKSR 156 (271)
Q Consensus 79 ~~l~-~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~a~-a~~g~~l~~~~~~v~i~~~~~~~~~~~~~~~i~~~~~~ 156 (271)
++++ .|||++|+++.+++..+++.|+++++|||+||++++ +.+|+|.++| .+.++.|...
T Consensus 88 alvSdaGdP~I~dpg~~Lv~~~~~~gi~v~vIPGiSA~~aA~a~sG~~~~~f--------~f~Gflp~~~---------- 149 (287)
T PRK14994 88 ALVSDAGTPLINDPGYHLVRTCREAGIRVVPLPGPCAAITALSAAGLPSDRF--------CYEGFLPAKS---------- 149 (287)
T ss_pred EEEccCCCCceeCCHHHHHHHHHHCCCCEEEeCCHHHHHHHHHHcCCCCCcc--------eEeEECCCCC----------
Confidence 9998 999999999999988888889999999999999966 9999995543 1222323210
Q ss_pred CcceeeeecccCCccchHHHhhcccccCCeeeccHHHHHHHHHHhhhcCCCCCCCCeEEEEeccCCCCeEEEEeeccchh
Q psy11146 157 GLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATSLSNMT 236 (271)
Q Consensus 157 ~~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~v~v~~~l~~~~E~i~~~~l~~l~ 236 (271)
....+.|+++.....++ ++|+.++++.+.|.++++ .+++++++++++++|..+|.+++++++++.
T Consensus 150 ----------~~r~~~L~~l~~~~~t~--V~yesp~R~~~~l~~l~~---~~g~~~~v~i~relTk~~E~~~~g~~~~i~ 214 (287)
T PRK14994 150 ----------KGRRDALKALEAEPRTL--IFYESTHRLLDSLEDIVA---VLGESRYVVLARELTKTWETIHGAPVGELL 214 (287)
T ss_pred ----------chHHHHHHHHhcCCCeE--EEEEEChhHHHHHHHHHH---hcCCCCeEEEEeeccCCCCcEEeeEHHHHH
Confidence 01123455555544444 566668999999988886 566688999999999999999999999985
Q ss_pred h
Q psy11146 237 E 237 (271)
Q Consensus 237 ~ 237 (271)
+
T Consensus 215 ~ 215 (287)
T PRK14994 215 A 215 (287)
T ss_pred H
Confidence 5
No 30
>PRK08284 precorrin 6A synthase; Provisional
Probab=99.97 E-value=3.8e-31 Score=228.34 Aligned_cols=193 Identities=18% Similarity=0.208 Sum_probs=128.5
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcc----cccccCchhHhhhhc---Ccceeec-----ch---------
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYT----SILIDDIIDDMKSFY---GKDIIIA-----DR--------- 59 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~----s~~~~~~~~~l~~~~---~~~v~~~-----~~--------- 59 (271)
+||+||+|||||||||+||+++|++||+|++|... +.+... .++++.+. +++++.. +.
T Consensus 3 kly~VGvGPGDPeLLTlkA~r~L~~advV~~p~~~~~~~~la~~a-~~iv~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~ 81 (253)
T PRK08284 3 RLLLIGIGAGDPDHLTLQAIKALNRADVFFVPDKGADKDDLVALR-REICARHITGPGYRVVEFDDPVRDRAPDDYRAAV 81 (253)
T ss_pred EEEEEEecCCChhHhhHHHHHHHHhCCEEEEECCCCCchhHHHHH-HHHHHHHhcCCCceEEecCCCCcccchhhhhhhh
Confidence 48999999999999999999999999999998552 111011 33444443 1222211 11
Q ss_pred hhHHHH-----HHHHHHhcCC-CCEEEEecCCCCCCCcHHHHHHHHhc---CCCCEEEEcCchHHHHH-HHcCCcccccc
Q psy11146 60 EMVESA-----SDVILHNADV-EDVALLVVGDPYGATTHTDLVLRARQ---SNIPTKVVHNASILNAA-GCCGLQLYNFG 129 (271)
Q Consensus 60 ~~~~~~-----~~~i~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~~~~---~~~~v~iiPGiSs~~a~-a~~g~~l~~~~ 129 (271)
..|.+. .+.|.+++.+ ++|++|++|||++||++.++...... ++++++|||||||++++ |++|+||++.+
T Consensus 82 ~~~~~~~~~~~~~~i~~~l~~g~~Vv~l~~GDP~~ys~~~~l~~~l~~~~~~~i~vevVPGISS~~aaaA~lg~pl~~~~ 161 (253)
T PRK08284 82 DDWHAARAALYERLIAEELPDGGTGAFLVWGDPSLYDSTLRILERVRARGRVAFDYEVIPGITSVQALAARHRIPLNRIG 161 (253)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCcEEEEeCCCcchhhHHHHHHHHHHhhccCCCcEEEECChhHHHHHHHHcCCChhcCC
Confidence 122222 2347777777 99999999999999999888666543 48999999999999976 99999999876
Q ss_pred ceeEEeeecCCCCCCchhhHHHhhhccCcceeeeecccCCccchHHHhhcccccCCeeeccHHH-HHHHHHHhhhcCCCC
Q psy11146 130 ETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQ-AAQQLVEITKTKPGL 208 (271)
Q Consensus 130 ~~v~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~~L~~~~~~~~~~ 208 (271)
+++.+ .+++ ... . .+... .++++.|+.++ ..+.|.
T Consensus 162 ~~l~i--i~g~--~l~------~----------------------~l~~~---~~~vvv~k~~~~~~~~L~--------- 197 (253)
T PRK08284 162 EPVHI--TTGR--RLA------E----------------------GWPAG---VDNVVVMLDGECSFRRLD--------- 197 (253)
T ss_pred ceEEE--EecC--chH------H----------------------HHHhc---CCcEEEEECCcCCHHHHc---------
Confidence 55543 2221 100 0 00010 11133333332 223222
Q ss_pred CCCCeEEEEeccCCCCeEEEEeeccchhhc
Q psy11146 209 STADLAVGIARVGSETQHIVATSLSNMTET 238 (271)
Q Consensus 209 ~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~ 238 (271)
.++.++++++|+|+|+|+|+.+++.++.+.
T Consensus 198 ~~~~~v~v~e~l~~p~E~I~~~~l~ei~~~ 227 (253)
T PRK08284 198 DPDLEIWWGAYLGTPDEILIAGPLAEVAEE 227 (253)
T ss_pred CCCCEEEEEecCCCCCeEEEEccHHHHHHH
Confidence 135699999999999999999999988663
No 31
>TIGR02434 CobF precorrin-6A synthase (deacetylating). This model identifies CobF in High GC gram positive, alphaproteobacteria and pseudomonas-related species.
Probab=99.97 E-value=6.2e-31 Score=226.52 Aligned_cols=191 Identities=16% Similarity=0.186 Sum_probs=127.6
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcc----cccccCchhHhhhhc---Ccceeec------ch--------
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYT----SILIDDIIDDMKSFY---GKDIIIA------DR-------- 59 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~----s~~~~~~~~~l~~~~---~~~v~~~------~~-------- 59 (271)
.||+||+||||||+||+||+++|++||+|++|... ++.... .++++.+. ++++... +.
T Consensus 2 ~l~~VG~GPGDPeLLTlkA~r~L~~AdvV~~p~~~~~~~~l~~~a-~~i~~~~~~~~~~~i~~~~~pm~~~~~~~y~~~~ 80 (249)
T TIGR02434 2 TILLIGIGAGDPEQLTLQAVDALNHADVFFVLDKGEQKSDLVALR-REICARYVTAPGYRIVEVDDPERDAGADDYRAAV 80 (249)
T ss_pred EEEEEEeCCCChHHhHHHHHHHHHhCCEEEEECCCCCchhHHHHH-HHHHHHHhCCCCcEEEEecCCCcCCccchhhhhH
Confidence 48999999999999999999999999999997542 110001 44454432 2223211 11
Q ss_pred hhHH-----HHHHHHHHhcCC-CCEEEEecCCCCCCCcHHHHHHHHhc---CCCCEEEEcCchHHHHH-HHcCCcccccc
Q psy11146 60 EMVE-----SASDVILHNADV-EDVALLVVGDPYGATTHTDLVLRARQ---SNIPTKVVHNASILNAA-GCCGLQLYNFG 129 (271)
Q Consensus 60 ~~~~-----~~~~~i~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~~~~---~~~~v~iiPGiSs~~a~-a~~g~~l~~~~ 129 (271)
..|. +.++.+.+.+.+ ++||+|++|||++||++.++..+... .+++++|||||||++++ |++|+||++.+
T Consensus 81 ~~~~~~~~~~~a~~i~~~~~~g~~Vv~L~~GDP~~yst~~~l~~~l~~~~~~~~~vevVPGISS~~aaaA~lg~pl~~~~ 160 (249)
T TIGR02434 81 DDWHAQRADIWAQAIAEELGDDGTGAFLVWGDPSLYDSTLRILERLRALGGVPFDYEVIPGITSVQALTARHRIPLNRIG 160 (249)
T ss_pred HHhhhhHHHHHHHHHHHHHhCCCcEEEEeCCCchHhhhHHHHHHHHHHhcCCCCCEEEECCHHHHHHHHHHhCCCcccCC
Confidence 0122 234557777777 99999999999999999888665443 47899999999999976 99999999876
Q ss_pred ceeEEeeecCCCCCCchhhHHHhh-hccCcceeeeecccCCccchHHHhhcccccCCeeeccHHHH-HHHHHHhhhcCCC
Q psy11146 130 ETVSIPFWTESWKPDSFYDKIVEN-KSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQA-AQQLVEITKTKPG 207 (271)
Q Consensus 130 ~~v~i~~~~~~~~~~~~~~~i~~~-~~~~~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~~L~~~~~~~~~ 207 (271)
+.+.+. |++... .. +... +++++|+.++. .+.+.+
T Consensus 161 ~~l~v~----~g~~l~------~~~l~~~--------------------------~~~vilk~~~~~~~~l~~------- 197 (249)
T TIGR02434 161 EPVQIT----TGRRLA------EGGFPEG--------------------------DTVVVMLDGEQAFQRVDP------- 197 (249)
T ss_pred ceEEEE----eccchh------hccccCC--------------------------CeEEEEECCccCHHHhcC-------
Confidence 555432 222110 00 1111 11334443332 222311
Q ss_pred CCCCCeEEEEeccCCCCeEEEEeeccchhh
Q psy11146 208 LSTADLAVGIARVGSETQHIVATSLSNMTE 237 (271)
Q Consensus 208 ~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~ 237 (271)
.+.++++++|+|+|+|+|+.+++.++.+
T Consensus 198 --~~~~~~v~e~lg~pdE~I~~~~l~~l~~ 225 (249)
T TIGR02434 198 --EDIDIYWGAYLGTPDEILISGPLAEVGP 225 (249)
T ss_pred --CCCEEEEEEeCCCCCeEEEEccHHHHHH
Confidence 2568999999999999999988888765
No 32
>KOG1527|consensus
Probab=99.96 E-value=7.6e-29 Score=214.89 Aligned_cols=216 Identities=19% Similarity=0.256 Sum_probs=160.8
Q ss_pred EEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhc-Ccceee-----cchh-hHHHHHHHHHHhcC
Q psy11146 2 FYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFY-GKDIII-----ADRE-MVESASDVILHNAD 74 (271)
Q Consensus 2 l~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~-~~~v~~-----~~~~-~~~~~~~~i~~~~~ 74 (271)
||+||.|||+|++||++|+++|++||+++++...+ ..+|+... ..+... .+.+ ..++..+..++.+.
T Consensus 258 i~LvGsGPGsp~lLT~~A~~~I~sAD~~LaDkLVp------~avL~Lipp~t~lfia~KfpGna~raQ~Elh~~~l~~l~ 331 (506)
T KOG1527|consen 258 IYLVGSGPGSPELLTLKAVRVIQSADLLLADKLVP------NAVLELIPPDTRLFIAGKFPGNASRAQEELHELLLNFLE 331 (506)
T ss_pred EEEEccCCCChhheeHHHHHHHhhcceehhhhccc------HHHHhhcCCCCceEEeecCCCchhHHHHHHHHHHHHHHh
Confidence 79999999999999999999999999999975422 34444333 223222 1111 23334344667777
Q ss_pred C-CCEEEEecCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHHHH-HHcCCccccccceeEEeeecCCCCCCchhhHHHh
Q psy11146 75 V-EDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAA-GCCGLQLYNFGETVSIPFWTESWKPDSFYDKIVE 152 (271)
Q Consensus 75 ~-~~V~~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~a~-a~~g~~l~~~~~~v~i~~~~~~~~~~~~~~~i~~ 152 (271)
+ ..|++|+.|||++|+++.......+++|+...|+|||||..++ +.+|+|+++.|.+.++.+++++++....
T Consensus 332 ~G~~VVRLKqGDPyifGRGGEE~~Ff~qhGy~p~ViPGIssal~~~~~agIP~ThRgvAdqvl~cTGtgrKG~~------ 405 (506)
T KOG1527|consen 332 AGATVVRLKQGDPYIFGRGGEEMDFFQQHGYRPQVIPGISSALGIAAEAGIPLTHRGVADQVLFCTGTGRKGGT------ 405 (506)
T ss_pred CCCEEEEecCCCceeecCCchhhhhHHhCCceeEeccchhhhhhhhHhcCCCcccccccceEEEEeccCCCCCC------
Confidence 7 8999999999999999988766667899999999999999876 8999999988888888889988865431
Q ss_pred hhccCcceeeeecccCCccchHHHhhcccccCCeeeccHHH---HHHHHHHhhhcCCCCCCCCeEEEEeccCCCCeEEEE
Q psy11146 153 NKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQ---AAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVA 229 (271)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~---~~~~L~~~~~~~~~~~~~~~v~v~~~l~~~~E~i~~ 229 (271)
. .+|.... .-.++++|..++ +++.|++ .||+.++|++++||.++||||.+.
T Consensus 406 ------p---~ip~fvp------------~~TtVflMaLhrl~~L~q~L~~-----hGwp~d~Pa~ivERgscPdQR~vf 459 (506)
T KOG1527|consen 406 ------P---AIPAFVP------------DTTTVFLMALHRLPSLAQKLMD-----HGWPSDTPAVIVERGSCPDQRTVF 459 (506)
T ss_pred ------C---CccccCC------------CceeEeeehhcchHHHHHHHHh-----cCCCCCCCeeeEeccCCchHHHHH
Confidence 0 0011000 111278998887 5566666 899999999999999999999999
Q ss_pred eeccchhhc--cCCCCceEEEEeccCCc
Q psy11146 230 TSLSNMTET--DMGKPLHSLIIVGNIHP 255 (271)
Q Consensus 230 ~~l~~l~~~--~~~~~~~sliivg~~~~ 255 (271)
..|++..+. ..+..+-+++|+|+.+.
T Consensus 460 ~~Lkdv~ee~~~~gs~pPglliiGk~vn 487 (506)
T KOG1527|consen 460 AELKDVAEEIQSAGSVPPGLLIIGKVVN 487 (506)
T ss_pred HHHHHHHHHHHhccCCCCcEEEEeeeec
Confidence 999888664 22223339999998754
No 33
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=99.92 E-value=1.5e-23 Score=178.91 Aligned_cols=212 Identities=22% Similarity=0.270 Sum_probs=163.5
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhc-CcceeecchhhHHHHHHHHHHhcCC-CCE
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFY-GKDIIIADREMVESASDVILHNADV-EDV 78 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~i~~~~~~-~~V 78 (271)
++|+|++..||.+.||.||.++|++||+|++++++ .. ...|..+- .++++..+.++.++....+++.+++ ++|
T Consensus 6 ~LYlV~TPIGNl~Dit~Ral~~L~~~D~iaaEDTR-~t----~~LL~~~~I~~~~is~h~hne~~~~~~li~~l~~g~~v 80 (275)
T COG0313 6 TLYLVPTPIGNLADITLRALEVLKEVDVIAAEDTR-VT----RKLLSHLGIKTPLISYHEHNEKEKLPKLIPLLKKGKSV 80 (275)
T ss_pred eEEEeCCCCCChHhcCHHHHHHHhhCCEEEEeccH-HH----HHHHHHhCCCCceecccCCcHHHHHHHHHHHHhcCCeE
Confidence 49999999999999999999999999999998763 21 34444442 4444444444556666778888888 799
Q ss_pred EEEe-cCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHH-HHHHcCCccccccceeEEeeecCCCCCCchhhHHHhhhcc
Q psy11146 79 ALLV-VGDPYGATTHTDLVLRARQSNIPTKVVHNASILN-AAGCCGLQLYNFGETVSIPFWTESWKPDSFYDKIVENKSR 156 (271)
Q Consensus 79 ~~l~-~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~-a~a~~g~~l~~~~~~v~i~~~~~~~~~~~~~~~i~~~~~~ 156 (271)
++++ .|.|.+++++..++..+++.|++|+++||+||+. |++.+|+|-+.| ...++.|...-+
T Consensus 81 alVSDAG~P~ISDPG~~LV~~a~~~gi~V~~lPG~sA~~tAL~~SGl~~~~F--------~F~GFLP~k~~~-------- 144 (275)
T COG0313 81 ALVSDAGTPLISDPGYELVRAAREAGIRVVPLPGPSALITALSASGLPSQRF--------LFEGFLPRKSKE-------- 144 (275)
T ss_pred EEEecCCCCcccCccHHHHHHHHHcCCcEEecCCccHHHHHHHHcCCCCCCe--------eEeccCCCCccH--------
Confidence 9999 9999999999999999999999999999999987 559999997765 334565644211
Q ss_pred CcceeeeecccCCccchHHHhhcccccCCeeeccHHHHHHHHHHhhhcCCCCCCCCeEEEEeccCCCCeEEEEeeccchh
Q psy11146 157 GLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATSLSNMT 236 (271)
Q Consensus 157 ~~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~v~v~~~l~~~~E~i~~~~l~~l~ 236 (271)
+...++++.....+. ++|.+|+++.+.|.++.+ .++.++++++++.+|...|.++++++.++.
T Consensus 145 ------------R~~~l~~l~~~~~t~--IfyEsphRl~~tL~d~~~---~~g~~r~v~vaRELTK~~Ee~~~g~~~e~~ 207 (275)
T COG0313 145 ------------RRKRLEALANEPRTL--IFYESPHRLLATLEDIVE---VLGSDREVVVARELTKLFEEIYRGTLSELI 207 (275)
T ss_pred ------------HHHHHHHHHhcCCeE--EEEecchhHHHHHHHHHH---HcCCCceEEEEeecccchhheecccHHHHH
Confidence 123455555544454 789999999999999886 777789999999999999999999999975
Q ss_pred hc---c-CCCCceEEEEec
Q psy11146 237 ET---D-MGKPLHSLIIVG 251 (271)
Q Consensus 237 ~~---~-~~~~~~sliivg 251 (271)
+. + .... +.+++-|
T Consensus 208 ~~~~~~~~KGE-~vlvv~~ 225 (275)
T COG0313 208 EWLEEDTLKGE-FVLVVEG 225 (275)
T ss_pred HHhhhcCCccc-EEEEEeC
Confidence 53 2 4444 3444445
No 34
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=99.88 E-value=1.8e-21 Score=169.42 Aligned_cols=198 Identities=16% Similarity=0.175 Sum_probs=149.5
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhc-CcceeecchhhHHHHHHHHHHhcCC-CCE
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFY-GKDIIIADREMVESASDVILHNADV-EDV 78 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~i~~~~~~-~~V 78 (271)
|+|+|++..||.+++|+||+++|++||+|+|+++... ...+..+. .++....+.++.++....+++...+ ++|
T Consensus 1 mLyvv~TPIGNl~Dit~Ral~~L~~~d~i~~EDTR~t-----~kLL~~~~I~~~~~~~~~hn~~~~~~~l~~~l~~g~~v 75 (276)
T TIGR00096 1 LLYVVTTPIGNLEDITRRALELLACVDLFAEEDTRTS-----KLLLHLGIIATPKAFHIDNEFQEKQNLLAAKLEIGNNI 75 (276)
T ss_pred CEEEECCCCcCHHHHhHHHHHHHHhCCEEEecCchhH-----HHHHHhcCCCCceEEEecccHhHHHHHHHHHHHcCCcE
Confidence 8999999999999999999999999999999876321 44444432 4455444445555556667777777 899
Q ss_pred EEEe-cCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHHHH-HHcCCccccccceeEEeeecCCCCCCchhhHHHhhhcc
Q psy11146 79 ALLV-VGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAA-GCCGLQLYNFGETVSIPFWTESWKPDSFYDKIVENKSR 156 (271)
Q Consensus 79 ~~l~-~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~a~-a~~g~~l~~~~~~v~i~~~~~~~~~~~~~~~i~~~~~~ 156 (271)
++++ .|.|++++++..++..+++.|++|.++||+|++.++ +.+|++-..| ...++.|...-++
T Consensus 76 alvSDAG~P~ISDPG~~LV~~~~~~~i~v~~ipG~sA~~~Al~~SG~~~~~f--------~F~GFlp~k~~~r------- 140 (276)
T TIGR00096 76 AVSSDAGPPLISDPGHLLVACREKANIIVVPLPGAAALTAALCASGPATDRF--------FFGGFLPKKSKRR------- 140 (276)
T ss_pred EEEecCCCCCcCCccHHHHHHHHHCCCeEEcCChHHHHHHHHHhcCCCCCce--------EEeeeCCCChHHH-------
Confidence 9999 999999999999999999999999999999999865 9999985543 3344555431110
Q ss_pred CcceeeeecccCCccchHHHhhcccccCCeeeccHHHHHHHHHHhhhcCCCCCCCCeEEEEeccCCCCeEEEEeeccchh
Q psy11146 157 GLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATSLSNMT 236 (271)
Q Consensus 157 ~~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~v~v~~~l~~~~E~i~~~~l~~l~ 236 (271)
...++.+.....++ ++|.+|+++.+.|.++.. .++ ++++++++.+|...|.+++++++++.
T Consensus 141 -------------~~~l~~l~~~~~t~--ifyEsp~Rl~~~L~~l~~---~~g-~r~i~~arELTK~~E~~~~g~~~e~~ 201 (276)
T TIGR00096 141 -------------QALKAYIAEERTTV--FFYESHHRLLTTLTDLNV---FLG-SERFVGAAELTKKESEYWFGTVGQLL 201 (276)
T ss_pred -------------HHHHHHHhCCCCeE--EEEECcHhHHHHHHHHHH---hcC-CceEEEEEecCCCceEEEeCCHHHHH
Confidence 11233343333344 678889888888877643 444 78999999999999999999999985
Q ss_pred h
Q psy11146 237 E 237 (271)
Q Consensus 237 ~ 237 (271)
+
T Consensus 202 ~ 202 (276)
T TIGR00096 202 P 202 (276)
T ss_pred H
Confidence 4
No 35
>COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only]
Probab=99.63 E-value=9.1e-15 Score=127.22 Aligned_cols=204 Identities=19% Similarity=0.243 Sum_probs=139.2
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhc--Ccceeecc---------hhhHHHHHHHH
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFY--GKDIIIAD---------REMVESASDVI 69 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~--~~~v~~~~---------~~~~~~~~~~i 69 (271)
||.+||+|||+-+.||+.-+++|+++|-++..+.. ...++.+. +..+...+ ...++.++..+
T Consensus 4 ~ItvVGLG~g~~d~L~lGi~k~lknqd~ly~RTkd-------HPviE~l~~e~~~f~~fD~iYE~heqFe~VYd~I~~~L 76 (488)
T COG3956 4 TITVVGLGAGDKDQLTLGIYKLLKNQDNLYVRTKD-------HPVIEELDEEGIKFSFFDDIYETHEQFEAVYDFIAADL 76 (488)
T ss_pred eEEEEeeCCCchhhcchHHHHHHhccceEEEecCC-------CchHHHHHhhcceeeehhHHHhhhhhHHHHHHHHHHHH
Confidence 68999999999999999999999999999987543 22333332 22222211 11355566778
Q ss_pred HHhcCCCCEEEEecCCCCCCCcHHHHH-HHHhcCCCCEEEEcCchHHHHH-HHcCCccccccceeEEeeecCCCCCCchh
Q psy11146 70 LHNADVEDVALLVVGDPYGATTHTDLV-LRARQSNIPTKVVHNASILNAA-GCCGLQLYNFGETVSIPFWTESWKPDSFY 147 (271)
Q Consensus 70 ~~~~~~~~V~~l~~GDP~~~~~~~~l~-~~~~~~~~~v~iiPGiSs~~a~-a~~g~~l~~~~~~v~i~~~~~~~~~~~~~ 147 (271)
++.++++++++.+||.|++......++ .+..+.++.|.|+||.|.+.+. ..+.++..+. .+ +..+.....
T Consensus 77 veaAkekdIvYAVPGHP~VAEktVqlL~e~~ek~ni~Vkilgg~SFiD~~fealkiDPveG---~q--~vDa~~l~~--- 148 (488)
T COG3956 77 VEAAKEKDIVYAVPGHPLVAEKTVQLLIEACEKENIKVKILGGQSFIDALFEALKIDPVEG---FQ--IVDATDLSN--- 148 (488)
T ss_pred HHhhcccceEEecCCCchhHHHHHHHHHHHHhccCceEEEeCcchhHHHHHHHhcCCcccC---ce--EeccchhhH---
Confidence 888888999999999999987766654 4456788999999999999876 8888875531 11 111110000
Q ss_pred hHHHhhhccCcceeeeecccCCccchHHHhhcccccCCeee--ccHHHHHHHHHHhhhcCCCCCCCCeEEEEeccCCCCe
Q psy11146 148 DKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRF--MSVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQ 225 (271)
Q Consensus 148 ~~i~~~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~~~~L~~~~~~~~~~~~~~~v~v~~~l~~~~E 225 (271)
.+ +....++ ++ +-+| |-.+.+.-.|++ -|++|+++.++..+|..+|
T Consensus 149 -~i---l~vr~hi-vI---------------------tQVY~~miAs~vKltLmE------~ypDDyev~ivtaags~~e 196 (488)
T COG3956 149 -DI---LDVRLHI-VI---------------------TQVYDQMIASDVKLTLME------YYPDDYEVYIVTAAGSENE 196 (488)
T ss_pred -HH---Hhhhhce-ee---------------------hhHHHHHHHHhHHHHHHH------hCCCCceEEEEEeccCCCc
Confidence 00 0001111 11 1122 445666777787 6889999999999999887
Q ss_pred E-EEEeeccchhhccCCCCceEEEEec
Q psy11146 226 H-IVATSLSNMTETDMGKPLHSLIIVG 251 (271)
Q Consensus 226 ~-i~~~~l~~l~~~~~~~~~~sliivg 251 (271)
. +.+.+|.+|.....-..+.|++++.
T Consensus 197 e~v~tvPLyELDr~~ainnLTsVyVP~ 223 (488)
T COG3956 197 ESVRTVPLYELDRQSAINNLTSVYVPP 223 (488)
T ss_pred cceeeecceeechhhhhhhcceeeccc
Confidence 6 8999999997654335567888875
No 36
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=65.77 E-value=40 Score=30.43 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=18.4
Q ss_pred hhhHHHHHHHhhCCEEE-EcCc--cccc
Q psy11146 14 DITVKGLEIVKKCDRVY-LEAY--TSIL 38 (271)
Q Consensus 14 llT~~A~~~L~~aDvv~-~~~~--~s~~ 38 (271)
.-+.+|+++|++||+|+ +|.+ +|+.
T Consensus 178 ~a~~eaveAI~~AD~IviGPgSl~TSIl 205 (323)
T COG0391 178 SAAPEAVEAIKEADLIVIGPGSLFTSIL 205 (323)
T ss_pred CCCHHHHHHHHhCCEEEEcCCccHhhhc
Confidence 46789999999999665 5543 4553
No 37
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=58.33 E-value=28 Score=31.59 Aligned_cols=76 Identities=21% Similarity=0.279 Sum_probs=46.0
Q ss_pred EEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhcCcceeecchhhHHHHHHHHHHhcCC--CCEE
Q psy11146 2 FYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKDIIIADREMVESASDVILHNADV--EDVA 79 (271)
Q Consensus 2 l~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~i~~~~~~--~~V~ 79 (271)
+.|+|+|| -++++..+.++...+.+|+.+....+ .+..+.+.+........+. .....+.+.-.. -+++
T Consensus 172 V~V~GaGp--IGLla~~~a~~~Ga~~Viv~d~~~~R-----l~~A~~~~g~~~~~~~~~~--~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 172 VVVVGAGP--IGLLAIALAKLLGASVVIVVDRSPER-----LELAKEAGGADVVVNPSED--DAGAEILELTGGRGADVV 242 (350)
T ss_pred EEEECCCH--HHHHHHHHHHHcCCceEEEeCCCHHH-----HHHHHHhCCCeEeecCccc--cHHHHHHHHhCCCCCCEE
Confidence 56777777 78999999999999999998644222 3344443444433222211 122333333333 5889
Q ss_pred EEecCCC
Q psy11146 80 LLVVGDP 86 (271)
Q Consensus 80 ~l~~GDP 86 (271)
+-++|.|
T Consensus 243 ie~~G~~ 249 (350)
T COG1063 243 IEAVGSP 249 (350)
T ss_pred EECCCCH
Confidence 9999954
No 38
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=57.93 E-value=16 Score=29.65 Aligned_cols=50 Identities=12% Similarity=0.043 Sum_probs=32.6
Q ss_pred EecCCCCcchhhHHHHHHHhhCCEEEEcCcccccc--cCchhHhhhhcCccee
Q psy11146 5 VGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILI--DDIIDDMKSFYGKDII 55 (271)
Q Consensus 5 VG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~--~~~~~~l~~~~~~~v~ 55 (271)
+++=|-|++.|.-.-.++++++|+|+.-...+..+ +. .+.+....++++.
T Consensus 38 ~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G~t~~D~t-~ea~~~~~~~~l~ 89 (170)
T cd00885 38 VTVVGDDEDRIAEALRRASERADLVITTGGLGPTHDDLT-REAVAKAFGRPLV 89 (170)
T ss_pred EEEeCCCHHHHHHHHHHHHhCCCEEEECCCCCCCCCChH-HHHHHHHhCCCcc
Confidence 34447788888877778889999999754332221 22 5566666676654
No 39
>COG1634 Uncharacterized Rossmann fold enzyme [General function prediction only]
Probab=53.54 E-value=24 Score=30.03 Aligned_cols=69 Identities=19% Similarity=0.234 Sum_probs=38.4
Q ss_pred EEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHh-hhhcCcceeecchhhHHHHHHHHHHhcCCCCEEE
Q psy11146 2 FYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDM-KSFYGKDIIIADREMVESASDVILHNADVEDVAL 80 (271)
Q Consensus 2 l~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l-~~~~~~~v~~~~~~~~~~~~~~i~~~~~~~~V~~ 80 (271)
+++||.||+-.+.+.. -++++|+.+++. ...+ +.-...++++.+-+ -..+.+.+...++++++
T Consensus 55 v~vvG~gP~l~e~~~~------~~~~~vi~AdgA-------~~~l~~~gi~pDiiVTDlD---gd~e~~~~~~~~g~i~V 118 (232)
T COG1634 55 VAVVGAGPSLEEEIKG------LSSEVVIAADGA-------VSALLERGIRPDIIVTDLD---GDPEDLLSCTAKGSIVV 118 (232)
T ss_pred EEEECCCCcHhhhhcc------cccceEEeccHH-------HHHHHHcCCCCcEEEecCC---CCHHHHHHhhccCCEEE
Confidence 7899999997766655 568888876442 1222 21123445544322 11233455444566655
Q ss_pred Ee-cCCC
Q psy11146 81 LV-VGDP 86 (271)
Q Consensus 81 l~-~GDP 86 (271)
+. -||=
T Consensus 119 VHAHGDN 125 (232)
T COG1634 119 VHAHGDN 125 (232)
T ss_pred EEecCcC
Confidence 54 8884
No 40
>KOG0024|consensus
Probab=52.36 E-value=53 Score=29.79 Aligned_cols=31 Identities=19% Similarity=0.147 Sum_probs=26.3
Q ss_pred EEEEecCCCCcchhhHHHHHHHhhCCEEEEcCc
Q psy11146 2 FYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAY 34 (271)
Q Consensus 2 l~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~ 34 (271)
+-+.|+|| -+++|..+.+++..+|||+.+-.
T Consensus 173 vLV~GAGP--IGl~t~l~Aka~GA~~VVi~d~~ 203 (354)
T KOG0024|consen 173 VLVLGAGP--IGLLTGLVAKAMGASDVVITDLV 203 (354)
T ss_pred EEEECCcH--HHHHHHHHHHHcCCCcEEEeecC
Confidence 45677777 78999999999999999998644
No 41
>PF08452 DNAP_B_exo_N: DNA polymerase family B exonuclease domain, N-terminal; InterPro: IPR013660 This domain is found in viral DNA polymerases to the N terminus of DNA polymerase family B exonuclease domains (IPR006133 from INTERPRO). ; GO: 0003887 DNA-directed DNA polymerase activity
Probab=52.27 E-value=2.1 Score=22.01 Aligned_cols=11 Identities=9% Similarity=0.314 Sum_probs=8.3
Q ss_pred hHHHHHhhhcc
Q psy11146 257 ESEFLAQYSTQ 267 (271)
Q Consensus 257 ~~~~l~~~~~~ 267 (271)
|-.+++|||++
T Consensus 2 eikCiNWFE~~ 12 (22)
T PF08452_consen 2 EIKCINWFESR 12 (22)
T ss_pred ccEEeehhhhC
Confidence 44578999986
No 42
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=52.21 E-value=46 Score=30.07 Aligned_cols=93 Identities=12% Similarity=0.045 Sum_probs=45.3
Q ss_pred HHHHhhCCEEEEcCcccccccCchhHhhhhc--Ccceeec-chh-hHHHHHHHHHHhcCC-CCEEEEecC-CCCCCCcHH
Q psy11146 20 LEIVKKCDRVYLEAYTSILIDDIIDDMKSFY--GKDIIIA-DRE-MVESASDVILHNADV-EDVALLVVG-DPYGATTHT 93 (271)
Q Consensus 20 ~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~--~~~v~~~-~~~-~~~~~~~~i~~~~~~-~~V~~l~~G-DP~~~~~~~ 93 (271)
.+.+.++|+|+.-...... .+....++ ++.++.. +.+ ...+..+.+.+.+++ +.++++..| ||+++|.-.
T Consensus 55 ~e~l~~iDVViIctPs~th----~~~~~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~~GwDPG~~si~r 130 (324)
T TIGR01921 55 EKHLDDVDVLILCMGSATD----IPEQAPYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVISTGWDPGMFSINR 130 (324)
T ss_pred HHhccCCCEEEEcCCCccC----HHHHHHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEECCCCcChHHHHH
Confidence 3455778888753211111 23333322 4444421 111 122334556666665 789888855 998877654
Q ss_pred HHHHHHhcCCCCEE-EEcCchHHH
Q psy11146 94 DLVLRARQSNIPTK-VVHNASILN 116 (271)
Q Consensus 94 ~l~~~~~~~~~~v~-iiPGiSs~~ 116 (271)
.+.....-.|..+. -=||+|--.
T Consensus 131 ~~~ea~lp~g~~yt~wG~g~s~gh 154 (324)
T TIGR01921 131 VYGEAVLPKGQTYTFWGPGLSQGH 154 (324)
T ss_pred HHHhccCCCCcceeccCCCcCchh
Confidence 33222212233332 237777643
No 43
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=43.00 E-value=1.4e+02 Score=24.30 Aligned_cols=31 Identities=39% Similarity=0.485 Sum_probs=21.1
Q ss_pred HHHHHHhhCCEEEEcCcccccccCchhHhhhhcCcceee
Q psy11146 18 KGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKDIII 56 (271)
Q Consensus 18 ~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~~~~v~~ 56 (271)
+-++.++.+|.|.-- .. .+.+++.++|+++.
T Consensus 58 ~l~~~lks~d~v~ev---~i-----~~sle~iyGKRvIi 88 (218)
T COG1707 58 KLLERLKSFDYVIEV---EI-----HRSLEEIYGKRVII 88 (218)
T ss_pred HHHHHhhccceEEEe---ee-----cchHHHHhCcEEEE
Confidence 346788999988741 22 45677778888764
No 44
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=37.54 E-value=1.3e+02 Score=26.99 Aligned_cols=19 Identities=16% Similarity=0.293 Sum_probs=16.7
Q ss_pred hhhHHHHHHHhhCCEEEEc
Q psy11146 14 DITVKGLEIVKKCDRVYLE 32 (271)
Q Consensus 14 llT~~A~~~L~~aDvv~~~ 32 (271)
-.+.+++++|++||+|++.
T Consensus 164 ~~~~~a~~AI~~AD~Iv~g 182 (308)
T cd07187 164 KANPEALEAIEEADLIVYG 182 (308)
T ss_pred CCCHHHHHHHHhCCEEEEC
Confidence 5788999999999999874
No 45
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=37.04 E-value=99 Score=26.39 Aligned_cols=54 Identities=11% Similarity=0.007 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcCC-CCEEEEecCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHH
Q psy11146 63 ESASDVILHNADV-EDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILN 116 (271)
Q Consensus 63 ~~~~~~i~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~ 116 (271)
++..+.+.+.... -..+.++.|.|+.+.-...++.++...|+++.+.-.-|-..
T Consensus 59 ~ei~~~i~~~~~~~~~~V~lTGGEPll~~~l~~li~~l~~~g~~v~leTNGtl~~ 113 (238)
T TIGR03365 59 EEVWQELKALGGGTPLHVSLSGGNPALQKPLGELIDLGKAKGYRFALETQGSVWQ 113 (238)
T ss_pred HHHHHHHHHHhCCCCCeEEEeCCchhhhHhHHHHHHHHHHCCCCEEEECCCCCcH
Confidence 4444444443322 34588999999998656666677777899998887766544
No 46
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=36.87 E-value=1.2e+02 Score=24.44 Aligned_cols=53 Identities=19% Similarity=0.216 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHhcCCCCEEEEcCchH
Q psy11146 62 VESASDVILHNADVEDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASI 114 (271)
Q Consensus 62 ~~~~~~~i~~~~~~~~V~~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs 114 (271)
.++..+.+.+....-+.+.++.|+|+.+.....++..+.+.+..+.+...-+.
T Consensus 49 ~~~i~~~i~~~~~~~~~i~~sGGEPll~~~l~~li~~~~~~g~~v~i~TNg~~ 101 (191)
T TIGR02495 49 VEFLLEFLRSRQGLIDGVVITGGEPTLQAGLPDFLRKVRELGFEVKLDTNGSN 101 (191)
T ss_pred HHHHHHHHHHhcCCCCeEEEECCcccCcHhHHHHHHHHHHCCCeEEEEeCCCC
Confidence 34444444443222345677899999877665666666667877777765543
No 47
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=35.33 E-value=1.2e+02 Score=25.44 Aligned_cols=50 Identities=12% Similarity=0.027 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHhcCCCCEEEEcC
Q psy11146 62 VESASDVILHNADVEDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHN 111 (271)
Q Consensus 62 ~~~~~~~i~~~~~~~~V~~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiPG 111 (271)
.+++++++.+......-+.++.|+|+.......++...+..|+++.+--+
T Consensus 58 ~~~I~~~i~~~~~~~~~V~lTGGEP~~~~~l~~Ll~~l~~~g~~~~lETn 107 (212)
T COG0602 58 ADEILADIKSLGYKARGVSLTGGEPLLQPNLLELLELLKRLGFRIALETN 107 (212)
T ss_pred HHHHHHHHHhcCCCcceEEEeCCcCCCcccHHHHHHHHHhCCceEEecCC
Confidence 34444444443233336788999997765566666666667888777664
No 48
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=34.96 E-value=74 Score=29.15 Aligned_cols=28 Identities=25% Similarity=0.267 Sum_probs=19.0
Q ss_pred HHHHHHhcCC-C--CEEEEecCCCCCCCcHH
Q psy11146 66 SDVILHNADV-E--DVALLVVGDPYGATTHT 93 (271)
Q Consensus 66 ~~~i~~~~~~-~--~V~~l~~GDP~~~~~~~ 93 (271)
.+..+++.++ - +=++++.|||+.-+...
T Consensus 146 ~~~al~YIa~hPeI~eVllSGGDPL~ls~~~ 176 (369)
T COG1509 146 WDKALDYIAAHPEIREVLLSGGDPLSLSDKK 176 (369)
T ss_pred HHHHHHHHHcCchhheEEecCCCccccCHHH
Confidence 3455566554 2 33899999998877654
No 49
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=33.14 E-value=45 Score=22.14 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=23.8
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEE
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVY 30 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~ 30 (271)
++.+||.|..+++ +..|..++|.+..+=+
T Consensus 4 ~VsvVG~gm~~~g-v~~ki~~~L~~~~I~v 32 (66)
T cd04915 4 IVSVIGRDLSTPG-VLARGLAALAEAGIEP 32 (66)
T ss_pred EEEEECCCCCcch-HHHHHHHHHHHCCCCE
Confidence 3789999998775 8889999998877655
No 50
>PF08043 Xin: Xin repeat; InterPro: IPR012510 The repeat has the consensus sequence GDV(K/Q/R)(T/S/G)X(R/K/T) WLFETXPLD. This repeat motif is typically found in the N terminus of the proteins, with a copy number between 2 and 28 repeats. Direct evidence for binding to and stabilising F-actin has been found in the human protein (Q702N9 from SWISSPROT) []. The homologues in mouse and chicken localise in the adherens junction complex of the intercalated disc in cardiac muscle and in the myotendon junction of skeletal muscle. mXin may co-localise with Vinculin which is known to attach the actin to the cytoplasmic membrane []. It has been shown that the amino-terminus of human xin (CMYA1) binds the EVH1 domain of Mena/VASP/EVL, and the carboxy-terminus binds the, for the filamin family unique, domain 20 of filamin C []. This confirms the proposed role of xin repeat containing proteins as F-actin-binding adapter proteins.; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0030054 cell junction
Probab=32.60 E-value=16 Score=17.54 Aligned_cols=6 Identities=50% Similarity=0.778 Sum_probs=3.8
Q ss_pred hhccCC
Q psy11146 264 YSTQEL 269 (271)
Q Consensus 264 ~~~~~~ 269 (271)
|||+||
T Consensus 10 FEtqpl 15 (16)
T PF08043_consen 10 FETQPL 15 (16)
T ss_pred eecccC
Confidence 566665
No 51
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=31.51 E-value=2e+02 Score=25.89 Aligned_cols=19 Identities=16% Similarity=0.302 Sum_probs=16.6
Q ss_pred hhhHHHHHHHhhCCEEEEc
Q psy11146 14 DITVKGLEIVKKCDRVYLE 32 (271)
Q Consensus 14 llT~~A~~~L~~aDvv~~~ 32 (271)
..+.+++++|++||+|++.
T Consensus 161 ~a~~~al~AI~~ADlIvlg 179 (310)
T TIGR01826 161 PALREAVEAIREADLIILG 179 (310)
T ss_pred CCCHHHHHHHHhCCEEEEC
Confidence 5679999999999998864
No 52
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=30.70 E-value=57 Score=20.97 Aligned_cols=30 Identities=13% Similarity=0.247 Sum_probs=24.7
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEE
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVY 30 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~ 30 (271)
++.+||.|-.+...+..+..++|.++.+-+
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v 32 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNI 32 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCE
Confidence 478999998777788899999999887544
No 53
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.83 E-value=82 Score=20.42 Aligned_cols=31 Identities=3% Similarity=0.233 Sum_probs=24.3
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEE
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYL 31 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~ 31 (271)
|+.+||.|.-+...+..|..++|.+..+.+.
T Consensus 3 lIsvvG~~~~~~~~v~~~i~~~L~~i~i~~i 33 (64)
T cd04917 3 LVALIGNDISETAGVEKRIFDALEDINVRMI 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHhCCeEEE
Confidence 5789999996656677899999988776653
No 54
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=29.73 E-value=1.6e+02 Score=23.59 Aligned_cols=58 Identities=17% Similarity=0.173 Sum_probs=31.9
Q ss_pred HHHhhCCEEEEcCcccccccCchhHhhhhcCcceeecchhhHHHHHHHHHHhcCC-CCEEEEecCCCC
Q psy11146 21 EIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKDIIIADREMVESASDVILHNADV-EDVALLVVGDPY 87 (271)
Q Consensus 21 ~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~i~~~~~~-~~V~~l~~GDP~ 87 (271)
+++++||+++.+.. . ...+..+.+.++. .+-.-.+.+..+++.+.+ +.-+++..|+|-
T Consensus 1 ~~~~~adlv~~DG~-~------i~~~~~~~g~~~~--~rv~g~dl~~~l~~~~~~~~~~ifllG~~~~ 59 (172)
T PF03808_consen 1 EALNSADLVLPDGM-P------IVWAARLLGRPLP--ERVTGSDLFPDLLRRAEQRGKRIFLLGGSEE 59 (172)
T ss_pred ChHHhCCEEecCCH-H------HHHHHHHcCCCCC--cccCHHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 57899999998633 1 2222333355531 111222344556666655 556777778773
No 55
>PRK01215 competence damage-inducible protein A; Provisional
Probab=28.81 E-value=2.2e+02 Score=24.87 Aligned_cols=50 Identities=12% Similarity=0.141 Sum_probs=32.0
Q ss_pred EecCCCCcchhhHHHHHHHhhCCEEEEcCcccccc--cCchhHhhhhcCccee
Q psy11146 5 VGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILI--DDIIDDMKSFYGKDII 55 (271)
Q Consensus 5 VG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~--~~~~~~l~~~~~~~v~ 55 (271)
+++=|-|++.|.-.-.++++++|+|+.....+..+ +. .+.+..+.++++.
T Consensus 42 ~~~v~Dd~~~I~~~l~~a~~~~DlVIttGG~g~t~dD~t-~eaia~~~g~~l~ 93 (264)
T PRK01215 42 ITVVMDDIEEIVSAFREAIDRADVVVSTGGLGPTYDDKT-NEGFAKALGVELE 93 (264)
T ss_pred EEEeCCCHHHHHHHHHHHhcCCCEEEEeCCCcCChhhhH-HHHHHHHhCCCCC
Confidence 44447788888888888999999999753322211 11 4555555566643
No 56
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.71 E-value=73 Score=20.56 Aligned_cols=30 Identities=10% Similarity=0.126 Sum_probs=24.3
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEE
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVY 30 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~ 30 (271)
++.+||.|..+.-.+..+..++|.++++=+
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v 32 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINI 32 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCE
Confidence 478899988776778889999999987633
No 57
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.30 E-value=84 Score=20.55 Aligned_cols=31 Identities=19% Similarity=0.179 Sum_probs=25.3
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEE
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYL 31 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~ 31 (271)
+|.+||.|..+--.+.-+..++|.+..+.+.
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~i 32 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHLV 32 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceEE
Confidence 4789999997766788999999988776653
No 58
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=26.12 E-value=76 Score=27.65 Aligned_cols=45 Identities=11% Similarity=0.060 Sum_probs=30.8
Q ss_pred CCCcchhhHHHHHHHhhCCEEEEcCcccccc----cCchhHhhhhcCcceee
Q psy11146 9 LGDVKDITVKGLEIVKKCDRVYLEAYTSILI----DDIIDDMKSFYGKDIII 56 (271)
Q Consensus 9 PGdp~llT~~A~~~L~~aDvv~~~~~~s~~~----~~~~~~l~~~~~~~v~~ 56 (271)
|-|++.|.-.-..+++++|+||.... +.| +. .+.+..+.++++..
T Consensus 44 gD~~~~I~~~l~~a~~r~D~vI~tGG--LGPT~DDiT-~e~vAka~g~~lv~ 92 (255)
T COG1058 44 GDNPDRIVEALREASERADVVITTGG--LGPTHDDLT-AEAVAKALGRPLVL 92 (255)
T ss_pred CCCHHHHHHHHHHHHhCCCEEEECCC--cCCCccHhH-HHHHHHHhCCCccc
Confidence 56889999999999999999997422 111 22 45566666777553
No 59
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.01 E-value=77 Score=20.27 Aligned_cols=30 Identities=17% Similarity=0.200 Sum_probs=23.9
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEE
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVY 30 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~ 30 (271)
++.+||.|..+...+..+..++|.++.+-+
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v 32 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINV 32 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCE
Confidence 478999998776677788999999887544
No 60
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=23.54 E-value=5.1e+02 Score=23.61 Aligned_cols=102 Identities=18% Similarity=0.182 Sum_probs=56.6
Q ss_pred EEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhc-Ccceee-----------cc----hhhHHHH
Q psy11146 2 FYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFY-GKDIII-----------AD----REMVESA 65 (271)
Q Consensus 2 l~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~-~~~v~~-----------~~----~~~~~~~ 65 (271)
|.+||+|=|.-.-+.---.+-++.++.+..-+. .+.|+... ..++.. .+ +..-++.
T Consensus 14 I~VIGvGg~G~n~v~~m~~~~~~gve~ia~nTD--------~q~L~~~~a~~ki~iG~~~t~GlGaGa~P~vG~~aAee~ 85 (338)
T COG0206 14 IKVIGVGGAGGNAVNRMIEEGVEGVEFIAINTD--------AQALKSSKADRKILIGESITRGLGAGANPEVGRAAAEES 85 (338)
T ss_pred EEEEEeCCcchHHHHHHHHhhhCceEEEEeccC--------HHHHhccccCeEEEeccceeeccCCCCCcHHHHHHHHHH
Confidence 678999988866666666666777777776322 33443221 112111 11 1122344
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCCCcHHH--HHHHHhcCC---CCEEEEcC
Q psy11146 66 SDVILHNADVEDVALLVVGDPYGATTHTD--LVLRARQSN---IPTKVVHN 111 (271)
Q Consensus 66 ~~~i~~~~~~~~V~~l~~GDP~~~~~~~~--l~~~~~~~~---~~v~iiPG 111 (271)
.++|.+.+..-+.++++.|.=+..+++.. +...+++.| +.+-+.|-
T Consensus 86 ~~~I~~~l~g~dmvfitaG~GGGTGtGaaPVvakiake~g~ltvavvt~Pf 136 (338)
T COG0206 86 IEEIEEALKGADMVFVTAGMGGGTGTGAAPVVAEIAKELGALTVAVVTLPF 136 (338)
T ss_pred HHHHHHHhccCCeEEEEeeecCCccccccHHHHHHHHhcCCcEEEEEEecc
Confidence 45677777667789999998765555543 222233333 34555554
No 61
>COG1432 Uncharacterized conserved protein [Function unknown]
Probab=23.24 E-value=2.2e+02 Score=23.18 Aligned_cols=46 Identities=24% Similarity=0.192 Sum_probs=32.0
Q ss_pred HHHHHhcC--CCCEEEEecCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHH
Q psy11146 67 DVILHNAD--VEDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILN 116 (271)
Q Consensus 67 ~~i~~~~~--~~~V~~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~ 116 (271)
-.+.+.+. +-+.++|++||- -+..++..++..|.++++++....++
T Consensus 100 ~D~~~l~~~~~~D~ivl~SgD~----DF~p~v~~~~~~G~rv~v~~~~~~~s 147 (181)
T COG1432 100 VDAMELADKKNVDTIVLFSGDG----DFIPLVEAARDKGKRVEVAGIEPMTS 147 (181)
T ss_pred HHHHHhhcccCCCEEEEEcCCc----cHHHHHHHHHHcCCEEEEEecCCcCH
Confidence 34555555 368899999995 33444566668899999998877544
No 62
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=22.93 E-value=2e+02 Score=21.96 Aligned_cols=41 Identities=32% Similarity=0.212 Sum_probs=26.5
Q ss_pred HHHHhcCC--CCEEEEecCCCCCCCcHHHHHHHHhcCCCCEEEEcCc
Q psy11146 68 VILHNADV--EDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNA 112 (271)
Q Consensus 68 ~i~~~~~~--~~V~~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiPGi 112 (271)
.+++.+.+ -++++|.+||- -+..++.+++..|.+|.++.=-
T Consensus 90 d~~~~~~~~~~d~ivLvSgD~----Df~~~i~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 90 DALELAYKRRIDTIVLVSGDS----DFVPLVERLRELGKRVIVVGFE 132 (149)
T ss_pred HHHHHhhhcCCCEEEEEECCc----cHHHHHHHHHHcCCEEEEEccC
Confidence 45555544 57899999996 3344455566778888776543
No 63
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=22.36 E-value=1.6e+02 Score=24.47 Aligned_cols=49 Identities=20% Similarity=0.175 Sum_probs=31.6
Q ss_pred ecCCCCcchhhHHHHHHHh--hCCEEEEcCcccccccCc-hhHhhhhcCcce
Q psy11146 6 GLGLGDVKDITVKGLEIVK--KCDRVYLEAYTSILIDDI-IDDMKSFYGKDI 54 (271)
Q Consensus 6 G~GPGdp~llT~~A~~~L~--~aDvv~~~~~~s~~~~~~-~~~l~~~~~~~v 54 (271)
++=|-|++.|.-.-.++++ ++|+|+.-..++..+.++ .+.+..+.++++
T Consensus 45 ~iVpDd~~~I~~aL~~a~~~~~~DlIITTGGtg~g~rDvTpeAv~~l~~kei 96 (193)
T PRK09417 45 RLIPDEQDLIEQTLIELVDEMGCDLVLTTGGTGPARRDVTPEATLAVADKEM 96 (193)
T ss_pred EECCCCHHHHHHHHHHHhhcCCCCEEEECCCCCCCCCCcHHHHHHHHhCCcC
Confidence 4557788888877777775 799999754444432111 566666666664
No 64
>PF01933 UPF0052: Uncharacterised protein family UPF0052; InterPro: IPR002882 This entry contains LPPG:Fo 2-phospho-L-lactate transferase (CofD) and related sequences of unknown function belong to unidentified protein family UPF0052. CofD catalyses the fourth step in the biosynthesis of coenzyme F420, which is the transfer of the 2-phospholactate moiety from lactyl (2) diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) with the formation of the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) and GMP. F420 is a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanocaldococcus jannaschii (Methanococcus jannaschii) [] but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. ; PDB: 2HZB_A 2O2Z_C 3CGW_A 3C3E_D 3C3D_D 2PPV_A 2P0Y_A 2Q7X_B.
Probab=21.97 E-value=1.2e+02 Score=27.13 Aligned_cols=28 Identities=14% Similarity=0.357 Sum_probs=17.0
Q ss_pred EEEecCCCCcchhhHHHHHHHhhCCEEEEc
Q psy11146 3 YVVGLGLGDVKDITVKGLEIVKKCDRVYLE 32 (271)
Q Consensus 3 ~iVG~GPGdp~llT~~A~~~L~~aDvv~~~ 32 (271)
++.|. |.++ .-+.+++++|++||+|++.
T Consensus 163 ~~~~~-~~~~-~~~p~~l~AI~~AD~Iiig 190 (300)
T PF01933_consen 163 FLEGA-PEEA-KANPEALEAIEEADLIIIG 190 (300)
T ss_dssp EEECT-STT---B-HHHHHHHHH-SEEEE-
T ss_pred EEecC-cccc-CCCHHHHHHHHhCCEEEEc
Confidence 34444 4444 5789999999999977754
No 65
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=21.91 E-value=1.9e+02 Score=24.18 Aligned_cols=115 Identities=14% Similarity=0.079 Sum_probs=55.7
Q ss_pred CEEEEecCC--CCcchhhHHHHHHHh--hCCEEEEcCcccccc-c--CchhHhhhhcCcceeecchhhHHH-HHHHHHHh
Q psy11146 1 MFYVVGLGL--GDVKDITVKGLEIVK--KCDRVYLEAYTSILI-D--DIIDDMKSFYGKDIIIADREMVES-ASDVILHN 72 (271)
Q Consensus 1 ml~iVG~GP--Gdp~llT~~A~~~L~--~aDvv~~~~~~s~~~-~--~~~~~l~~~~~~~v~~~~~~~~~~-~~~~i~~~ 72 (271)
+|++||.|- -++..+..+..+... ++.+++.|....... . .|.+.+..+.-+.+........++ .-.++.+.
T Consensus 1 ~l~~iGGg~~~~~~~~i~~~~~~~ag~~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~ 80 (217)
T cd03145 1 KLVLIGGAEDKYDNRAILQRFVARAGGAGARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVAR 80 (217)
T ss_pred CEEEEeCCCCCcCHHHHHHHHHHHcCCCCCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHH
Confidence 578999994 344566666777764 678888864310000 0 001222222112222211111111 11224444
Q ss_pred cCCCCEEEEecCCCCCCC-----cHH-HHHHHHhcCCCCEEEEcCchHHHHH
Q psy11146 73 ADVEDVALLVVGDPYGAT-----THT-DLVLRARQSNIPTKVVHNASILNAA 118 (271)
Q Consensus 73 ~~~~~V~~l~~GDP~~~~-----~~~-~l~~~~~~~~~~v~iiPGiSs~~a~ 118 (271)
+.+-+++++..||++.+- +.. ..+..+.+.| -++-|.|+=.++
T Consensus 81 l~~ad~I~~~GG~~~~~~~~l~~t~l~~~l~~~~~~G---~v~~G~SAGA~i 129 (217)
T cd03145 81 LRDADGIFFTGGDQLRITSALGGTPLLDALRKVYRGG---VVIGGTSAGAAV 129 (217)
T ss_pred HHhCCEEEEeCCcHHHHHHHHcCChHHHHHHHHHHcC---CEEEEccHHHHh
Confidence 455789999999995332 111 1122222334 467788876544
No 66
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=21.76 E-value=1.5e+02 Score=22.31 Aligned_cols=40 Identities=33% Similarity=0.294 Sum_probs=21.5
Q ss_pred HHHHHhcCC--CCEEEEecCCCCCCCcHHHHHHHHhcCCCCEEEEc
Q psy11146 67 DVILHNADV--EDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVH 110 (271)
Q Consensus 67 ~~i~~~~~~--~~V~~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiP 110 (271)
-.+.+.+.+ -+.++|.+|| +-+..++.+++..|.+|.++-
T Consensus 85 ~d~~~~~~~~~~d~ivLvSgD----~Df~~~v~~l~~~g~~V~v~~ 126 (146)
T PF01936_consen 85 VDILELAYENPPDTIVLVSGD----SDFAPLVRKLRERGKRVIVVG 126 (146)
T ss_dssp HHHHHHG--GG-SEEEEE-------GGGHHHHHHHHHH--EEEEEE
T ss_pred HHHHHHhhccCCCEEEEEECc----HHHHHHHHHHHHcCCEEEEEE
Confidence 345555533 5889999999 344555566667788888886
No 67
>KOG2666|consensus
Probab=21.57 E-value=3.3e+02 Score=24.87 Aligned_cols=13 Identities=23% Similarity=0.503 Sum_probs=10.8
Q ss_pred HHHHhhCCEEEEc
Q psy11146 20 LEIVKKCDRVYLE 32 (271)
Q Consensus 20 ~~~L~~aDvv~~~ 32 (271)
-+++++||+||..
T Consensus 73 ekai~eadlvfis 85 (481)
T KOG2666|consen 73 EKAIKEADLVFIS 85 (481)
T ss_pred HHHhhhcceEEEE
Confidence 4789999999974
No 68
>PRK09330 cell division protein FtsZ; Validated
Probab=20.98 E-value=3.6e+02 Score=25.03 Aligned_cols=103 Identities=17% Similarity=0.189 Sum_probs=53.2
Q ss_pred EEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhc-Ccceeec-----------c----hhhHHHH
Q psy11146 2 FYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFY-GKDIIIA-----------D----REMVESA 65 (271)
Q Consensus 2 l~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~-~~~v~~~-----------~----~~~~~~~ 65 (271)
|.+||+|=|.-.-+.--...-++.++.|.+.+. .+.|.... ..++... + +...++.
T Consensus 16 IkViGvGG~G~Nav~~m~~~~~~~v~fia~NTD--------~q~L~~~~a~~ki~lG~~~t~GlGaG~~pe~G~~aaee~ 87 (384)
T PRK09330 16 IKVIGVGGGGGNAVNRMIEEGIQGVEFIAANTD--------AQALLKSKAPVKIQLGEKLTRGLGAGANPEVGRKAAEES 87 (384)
T ss_pred EEEEEECCcHHHHHHHHHHcCCCCceEEEEeCc--------HHHHhcCCCCeEEEcCCcccccCCCCCCHHHHHHHHHHH
Confidence 678998888765555444444677888877532 33443321 2222221 1 1122333
Q ss_pred HHHHHHhcCCCCEEEEecCCCCCCCcHHH-HH-HHHhcCCC-CEEEEcCc
Q psy11146 66 SDVILHNADVEDVALLVVGDPYGATTHTD-LV-LRARQSNI-PTKVVHNA 112 (271)
Q Consensus 66 ~~~i~~~~~~~~V~~l~~GDP~~~~~~~~-l~-~~~~~~~~-~v~iiPGi 112 (271)
.++|.+.+..-+.++++.|-=+..+++.. ++ ..+++.++ .+-|++=+
T Consensus 88 ~e~I~~~l~~~D~vfI~AGmGGGTGTGaapvIA~iake~g~ltvaVvt~P 137 (384)
T PRK09330 88 REEIREALEGADMVFITAGMGGGTGTGAAPVVAEIAKELGILTVAVVTKP 137 (384)
T ss_pred HHHHHHHHcCCCEEEEEecCCCcccHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 45566666566777888886655444433 22 22334343 34555533
No 69
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=20.13 E-value=2.9e+02 Score=22.25 Aligned_cols=38 Identities=18% Similarity=0.194 Sum_probs=27.2
Q ss_pred HHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHhcCCCCEEEEc
Q psy11146 69 ILHNA--DVEDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVH 110 (271)
Q Consensus 69 i~~~~--~~~~V~~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiP 110 (271)
+++.+ .+-++.+|++|| +-+..++.++++.|..|.++-
T Consensus 97 ame~~~~~~iD~~vLvSgD----~DF~~Lv~~lre~G~~V~v~g 136 (160)
T TIGR00288 97 AMELIYNPNIDAVALVTRD----ADFLPVINKAKENGKETIVIG 136 (160)
T ss_pred HHHHhccCCCCEEEEEecc----HhHHHHHHHHHHCCCEEEEEe
Confidence 44444 225788889998 556677777778898888876
No 70
>PRK14717 putative glycine/sarcosine/betaine reductase complex protein A; Provisional
Probab=20.12 E-value=1.8e+02 Score=21.42 Aligned_cols=18 Identities=6% Similarity=0.231 Sum_probs=8.5
Q ss_pred HHHHHHHhcCCCCEEEEe
Q psy11146 65 ASDVILHNADVEDVALLV 82 (271)
Q Consensus 65 ~~~~i~~~~~~~~V~~l~ 82 (271)
.+..+.+.....+++++.
T Consensus 8 rvk~~aek~g~eNvvV~l 25 (107)
T PRK14717 8 RIKELAEKYGAENIVVIL 25 (107)
T ss_pred HHHHHHHhcCCccEEEEe
Confidence 334455544445555543
No 71
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=20.07 E-value=1.8e+02 Score=21.81 Aligned_cols=51 Identities=10% Similarity=0.076 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCC--CCEEEEecCCCCC---CCcHHHHHHHHhcCCC-CEEEEcCchH
Q psy11146 64 SASDVILHNADV--EDVALLVVGDPYG---ATTHTDLVLRARQSNI-PTKVVHNASI 114 (271)
Q Consensus 64 ~~~~~i~~~~~~--~~V~~l~~GDP~~---~~~~~~l~~~~~~~~~-~v~iiPGiSs 114 (271)
+.++++++.+.+ ..-+.+..|+|+. +.....++..+.+.+. .+.+.-..+.
T Consensus 39 ~~~~~ii~~~~~~~~~~i~l~GGEPll~~~~~~l~~i~~~~k~~~~~~~~~~tng~~ 95 (139)
T PF13353_consen 39 EIIEEIIEELKNYGIKGIVLTGGEPLLHENYDELLEILKYIKEKFPKKIIILTNGYT 95 (139)
T ss_dssp HHHHHHCHHHCCCCCCEEEEECSTGGGHHSHHHHHHHHHHHHHTT-SEEEEEETT--
T ss_pred hhhhhhhhHHhcCCceEEEEcCCCeeeeccHhHHHHHHHHHHHhCCCCeEEEECCCc
Confidence 445666666644 4556677899988 4444444555555555 3444433333
Done!