Query psy11146
Match_columns 271
No_of_seqs 180 out of 1259
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 19:12:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11146.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11146hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i4t_A Diphthine synthase; nia 100.0 1.4E-47 4.8E-52 336.6 20.4 266 1-267 22-290 (292)
2 2z6r_A Diphthine synthase; met 100.0 2.5E-45 8.7E-50 319.9 26.0 252 1-268 2-257 (265)
3 1vhv_A Diphthine synthase; str 100.0 2.7E-42 9.4E-47 301.1 24.6 241 1-268 14-256 (268)
4 2ybo_A Methyltransferase; SUMT 100.0 4.3E-41 1.5E-45 297.0 21.6 236 1-271 26-279 (294)
5 1wde_A Probable diphthine synt 100.0 3.6E-41 1.2E-45 297.7 19.5 245 1-267 9-267 (294)
6 1s4d_A Uroporphyrin-III C-meth 100.0 3.5E-39 1.2E-43 283.1 22.9 231 1-268 16-262 (280)
7 4e16_A Precorrin-4 C(11)-methy 100.0 2.7E-38 9.1E-43 273.6 23.6 223 1-259 6-238 (253)
8 1cbf_A Cobalt-precorrin-4 tran 100.0 1.5E-37 5.2E-42 273.4 22.8 231 1-268 22-260 (285)
9 3ndc_A Precorrin-4 C(11)-methy 100.0 2.6E-37 8.9E-42 268.9 23.6 219 1-255 5-232 (264)
10 1ve2_A Uroporphyrin-III C-meth 100.0 1.3E-37 4.6E-42 266.5 20.7 216 1-265 4-232 (235)
11 1pjq_A CYSG, siroheme synthase 100.0 2.5E-37 8.5E-42 288.4 20.0 229 1-267 217-457 (457)
12 1va0_A Uroporphyrin-III C-meth 100.0 5.1E-36 1.7E-40 257.3 20.6 212 1-256 2-224 (239)
13 3nut_A Precorrin-3 methylase; 100.0 3.4E-36 1.2E-40 260.2 18.5 215 1-255 10-236 (251)
14 1wyz_A Putative S-adenosylmeth 100.0 2.8E-36 9.4E-41 259.4 16.4 214 1-254 4-236 (242)
15 2e0n_A Precorrin-2 C20-methylt 100.0 2.7E-36 9.3E-41 262.0 16.0 225 1-271 6-248 (259)
16 3kwp_A Predicted methyltransfe 100.0 4.8E-35 1.6E-39 257.8 15.5 212 1-252 17-236 (296)
17 2zvb_A Precorrin-3 C17-methylt 100.0 4E-34 1.4E-38 252.0 19.5 217 1-255 3-248 (295)
18 2qbu_A Precorrin-2 methyltrans 100.0 1.2E-32 3.9E-37 235.2 22.4 208 1-253 4-229 (232)
19 2bb3_A Cobalamin biosynthesis 100.0 6E-32 2E-36 229.3 11.9 190 1-252 23-216 (221)
20 2npn_A Putative cobalamin synt 100.0 1.4E-31 4.7E-36 231.3 11.9 193 1-237 4-225 (251)
21 3nd1_A Precorrin-6A synthase/C 100.0 1.9E-30 6.6E-35 226.0 12.3 193 2-237 24-246 (275)
22 3hh1_A Tetrapyrrole methylase 99.9 1.3E-23 4.5E-28 160.5 10.9 107 1-112 7-117 (117)
23 3ffy_A Putative tetrapyrrole ( 99.3 5.1E-12 1.7E-16 95.6 7.5 106 110-251 1-111 (115)
24 3mvn_A UDP-N-acetylmuramate:L- 38.5 1.2E+02 0.0043 22.7 7.9 25 61-85 124-149 (163)
25 2pju_A Propionate catabolism o 32.4 2E+02 0.0067 23.2 9.9 63 15-86 51-117 (225)
26 3gx1_A LIN1832 protein; APC633 32.3 86 0.0029 23.0 5.4 52 62-118 47-100 (130)
27 1xnl_A ASLV/FP, membrane prote 27.9 24 0.00081 18.6 1.1 11 109-119 12-22 (29)
28 3kbq_A Protein TA0487; structu 26.8 1.1E+02 0.0037 23.8 5.3 52 4-55 41-93 (172)
29 3kkj_A Amine oxidase, flavin-c 24.8 35 0.0012 26.6 2.1 30 2-34 5-34 (336)
30 3c66_C PRE-mRNA polyadenylatio 22.8 16 0.00054 19.0 -0.2 12 3-15 4-15 (26)
31 3sho_A Transcriptional regulat 22.6 2.5E+02 0.0084 21.1 8.1 92 67-167 30-124 (187)
32 2qip_A Protein of unknown func 21.9 1.2E+02 0.004 23.0 4.6 39 68-110 101-140 (165)
33 2q5c_A NTRC family transcripti 20.7 3E+02 0.01 21.4 9.4 61 17-86 43-105 (196)
34 4f3y_A DHPR, dihydrodipicolina 20.5 1.7E+02 0.0057 24.4 5.7 12 20-31 68-79 (272)
No 1
>3i4t_A Diphthine synthase; niaid, ssgcid, infectious disease, anaerobic parasitic protozoan, structural genomics, decode, UW, SBRI; 2.49A {Entamoeba histolytica}
Probab=100.00 E-value=1.4e-47 Score=336.64 Aligned_cols=266 Identities=48% Similarity=0.829 Sum_probs=212.5
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhcCcceeecchhhHHHHHHHHHHhcCCCCEEE
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKDIIIADREMVESASDVILHNADVEDVAL 80 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~i~~~~~~~~V~~ 80 (271)
|||+||+|||||++||+||+++|++||+|+++.+++..+++ .+.|+.+.+++++..++...++..+.+++.+++++|++
T Consensus 22 ~l~lVG~GpGd~~~LT~rA~~~L~~ADvV~~e~~~s~~~~~-~~~L~~~~~~~~i~~~~~~~~~~~~~i~~~a~~~~Vv~ 100 (292)
T 3i4t_A 22 MLYIIGLGLYDEKDITVRGLEAVKSCDLVFLEHYTAILQCD-VAKLEEFYGKKVIIGDRDLVETEADQILEPAKTKNVAL 100 (292)
T ss_dssp EEEEEECBSSSGGGSCHHHHHHHHHCSEEEECGGGGGSSSC-HHHHHHHHTSCCEEC-------CCCTTHHHHTTSEEEE
T ss_pred EEEEEEECCCChHHhhHHHHHHHHhCCEEEEecccccccCC-HHHHHhCCCCeEEEcccccHHHHHHHHHHHhcCCCEEE
Confidence 69999999999999999999999999999998774432123 66777666666554444444444455777776689999
Q ss_pred EecCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHHHHHHcCCccccccceeEEeeecCCCCCCchhhHHHhhhccCcce
Q psy11146 81 LVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAAGCCGLQLYNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHT 160 (271)
Q Consensus 81 l~~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~a~a~~g~~l~~~~~~v~i~~~~~~~~~~~~~~~i~~~~~~~~~~ 160 (271)
|++|||++|+++.+++.++.+.|+++++||||||++|+|++|+||++++.+.++.+.+.|++|.++++.+++++..+.++
T Consensus 101 L~~GDP~i~g~g~~l~~~l~~~gi~veviPGiSs~~A~a~~G~pl~~~~~~~sv~~~t~~~~p~~~~~~~~~~l~~~~~T 180 (292)
T 3i4t_A 101 LVVGDVYGATTHSDIFVRCQKMGIEVKVIHNASIMNAIGCSGLQLYRFGQTVSVCFWSEHWRPSSYYPKIKINRDNNMHT 180 (292)
T ss_dssp EESBCHHHHCTTHHHHHHHHHHTCCEEEECCCCHHHHGGGGSCCGGGBCCCEEECCCBTTBCCCTHHHHHHHHHHTTCBE
T ss_pred EecCCCCccccHHHHHHHHHHCCCcEEEECCHHHHHHHHHhCCCcccCCceeEEEEEeCCCCCCccHHHHHHHhhcCCCe
Confidence 99999999999999887777789999999999999988999999999999999989999999988888888888889999
Q ss_pred eeeecccCCccchHHHhhcccccCCeeeccHHHHHHHHHHhhhc--CCCCCCCCeEEEEeccCCCCeEEEEeeccchhhc
Q psy11146 161 LCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKT--KPGLSTADLAVGIARVGSETQHIVATSLSNMTET 238 (271)
Q Consensus 161 ~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~~~~~--~~~~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~ 238 (271)
++++|...+...+++++++...|++..||+++++++.|.++.++ ..++++++++++++++|+++|+++.++++++.+.
T Consensus 181 lvl~d~~~~e~~~~~~~~~~~~y~p~r~m~~~~~~~~L~~~~~~l~~~g~~~dtpv~vv~~~t~~~E~i~~~tL~~l~~~ 260 (292)
T 3i4t_A 181 LVLLDIKVKERSEESIIKGRDIFEPPRYMTINQCIEQLLEVEKEQHLGVYDEDTMVVGMARVACADQKIVYGKMKDLLHY 260 (292)
T ss_dssp EEEECEECCC-------------CCCEECCHHHHHHHHHHHHHHHCCCSCCTTCEEEEEESTTSTTCEEEEEEHHHHTTC
T ss_pred EEEEeccccccchhhccccccccCCccccCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeecCCCceEEEEEEHHHHHhh
Confidence 99999887777788888887888888899999999988885432 2588889999999999999999999999999887
Q ss_pred cCCCCceEEEEecc-CCcchHHHHHhhhcc
Q psy11146 239 DMGKPLHSLIIVGN-IHPVESEFLAQYSTQ 267 (271)
Q Consensus 239 ~~~~~~~sliivg~-~~~~~~~~l~~~~~~ 267 (271)
+++.+..+++|+|+ .+++|+|+|+||...
T Consensus 261 ~~~~~~~~liivG~~l~~~e~e~l~~~~~~ 290 (292)
T 3i4t_A 261 DFGAPMHCLLIPAPQVDDPELDQLEYFKYK 290 (292)
T ss_dssp CCCSSCEEEEECCSSCCHHHHHHHGGGBCC
T ss_pred hcCCCCCEEEEECCcCCHHHHHHHHHhccC
Confidence 76667789999996 889999999999644
No 2
>2z6r_A Diphthine synthase; methyltransferase, S-adenosyl-L-methionine, transferase; HET: SAH MES; 1.50A {Pyrococcus horikoshii} PDB: 2dek_A* 1wng_A* 1vce_A* 2ed3_A* 2e4r_A* 2owg_A* 2ek3_A* 2pcm_A* 2p5c_A* 2hut_A* 2emr_A* 2el3_A* 2el0_A* 2ejk_A* 2eld_A* 2el2_A* 2eka_A* 2eh5_A* 2pcg_A* 2el1_A* ...
Probab=100.00 E-value=2.5e-45 Score=319.88 Aligned_cols=252 Identities=39% Similarity=0.662 Sum_probs=202.8
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCccccc-ccCchhHhhhhcCcceeecchhhHHHHHHHHH-HhcCCCCE
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSIL-IDDIIDDMKSFYGKDIIIADREMVESASDVIL-HNADVEDV 78 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~-~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~i~-~~~~~~~V 78 (271)
|||+||+|||||++||+||+++|++||+|+++++.+.. ... .+.++.+.++++...++...++..+.++ +.+++++|
T Consensus 2 ~l~iVG~GpG~~~~LT~~A~~~L~~advv~~~~~~~~l~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~V 80 (265)
T 2z6r_A 2 VLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTT-LGRIQRLIGKEIRVLSREDVELNFENIVLPLAKENDV 80 (265)
T ss_dssp CEEEEECBSSSGGGSBHHHHHHHHHCSEEEEECSSCCCTTCC-HHHHHHHHTSCCEEECHHHHHHHHHHHTHHHHTTSCE
T ss_pred EEEEEccCCCChHhcCHHHHHHHHhCCEEEEeccccccccCC-HHHHHhccCCcEEEcCcccHHHHHHHHHHHHhCCCcE
Confidence 79999999999999999999999999999998775311 002 5667665566655444445556666677 77666899
Q ss_pred EEEecCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHHHHHHcCCccccccceeEEeeecCCCCCCchhhHHHhhhccCc
Q psy11146 79 ALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAAGCCGLQLYNFGETVSIPFWTESWKPDSFYDKIVENKSRGL 158 (271)
Q Consensus 79 ~~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~a~a~~g~~l~~~~~~v~i~~~~~~~~~~~~~~~i~~~~~~~~ 158 (271)
++|++|||++|+++.++..++.+.+++++|+|||||++++|++|+||++++.++++.+.+.|++|...++.+..+...+.
T Consensus 81 ~~l~~GDP~i~~~~~~l~~~l~~~gi~veviPGiSs~~aaa~~g~pl~~~~~~~~v~~~s~~~~~~~~~~~l~~~~~~~~ 160 (265)
T 2z6r_A 81 AFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGL 160 (265)
T ss_dssp EEEESBCTTSSSSTHHHHHHHHHTTCCEEEECCCCHHHHGGGGTCCGGGBCCCEEECCCBTTBCCCHHHHHHHHHHHTTC
T ss_pred EEEECCCCcCCCCHHHHHHHHHHCCCcEEEECChhHHHHHHHhCCCccCCCccEEEEEecCCcCCCchHHHHHHHHhCCC
Confidence 99999999999999999888777899999999999999559999999998888888778889988765666776666566
Q ss_pred ceeeeecccCCccchHHHhhcccccCCeeeccHHHHHHHHHHhhhcC--CCCCCCCeEEEEeccCCCCeEEEEeeccchh
Q psy11146 159 HTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTK--PGLSTADLAVGIARVGSETQHIVATSLSNMT 236 (271)
Q Consensus 159 ~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~~~~~~--~~~~~~~~v~v~~~l~~~~E~i~~~~l~~l~ 236 (271)
++++++|...++ ..||++++..+.+.+++++. +++++++++++++++|+++|+++.++++++.
T Consensus 161 ~tlvl~d~~~~~---------------~~y~~~~~~~~~l~~~~~~l~~~~~~~~~~v~v~~~l~~~~E~i~~~~l~~l~ 225 (265)
T 2z6r_A 161 HTLLFLDIKAEK---------------RMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLI 225 (265)
T ss_dssp BEEEEECEEGGG---------------TEECCHHHHHHHHHHHHHHHCCSSSCTTCEEEEEESTTSSSCEEEEEEHHHHT
T ss_pred ceEEEEeccccc---------------ccccCHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeCCCCceEEEEeeHHHHh
Confidence 788877654221 24788886556665555442 3688899999999999999999999999997
Q ss_pred hccCCCCceEEEEeccCCcchHHHHHhhhccC
Q psy11146 237 ETDMGKPLHSLIIVGNIHPVESEFLAQYSTQE 268 (271)
Q Consensus 237 ~~~~~~~~~sliivg~~~~~~~~~l~~~~~~~ 268 (271)
+.++..++++++|+|+.+..|+++|+||++.|
T Consensus 226 ~~~~~~~~~~lii~g~~~~~~~~~l~~~~~~~ 257 (265)
T 2z6r_A 226 REDFGDPPHILIVPGKLHIVEAEYLVEIAGAP 257 (265)
T ss_dssp TCCCCSSCEEEEECCSCCHHHHHHHHHHHCCC
T ss_pred hhhcCCCCcEEEEECCCchHHHHHHHHHhcCc
Confidence 76554678899999999999999999999877
No 3
>1vhv_A Diphthine synthase; structural genomics, transferase; HET: MSE; 1.75A {Archaeoglobus fulgidus} SCOP: c.90.1.1
Probab=100.00 E-value=2.7e-42 Score=301.11 Aligned_cols=241 Identities=37% Similarity=0.636 Sum_probs=184.2
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhcCcceeecchhhHHHHHHHHHHhcCCCCEEE
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKDIIIADREMVESASDVILHNADVEDVAL 80 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~i~~~~~~~~V~~ 80 (271)
+||+||+|||||++||+||+++|++||+|+++++.+...-. .+.++.+++++........+++.++.+++.+++++||+
T Consensus 14 ~l~vVG~GpGd~~lLTlrA~~~L~~ADvI~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~Va~ 92 (268)
T 1vhv_A 14 LLTFVGLGLWDVKDISVKGLEAVREADEVYVEYYTSKLLSS-IEEMEEFFGKRVVELERSDLEENSFRLIERAKSKSVVL 92 (268)
T ss_dssp EEEEEECBSSSGGGSBHHHHHHHHHCSEEEEECSSCCCSSC-HHHHHHHHTSCCEEECHHHHTTTHHHHHHHHTTSEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHhcCCEEEECCchHhhhcc-HHHHHHHhCCCccccchhHHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999999999999998654321001 44555545555433223345555667887776689999
Q ss_pred EecCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHHHH-HHcCCccccccceeEEeeecCCCCCCchhhHHHhhhccCcc
Q psy11146 81 LVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAA-GCCGLQLYNFGETVSIPFWTESWKPDSFYDKIVENKSRGLH 159 (271)
Q Consensus 81 l~~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~a~-a~~g~~l~~~~~~v~i~~~~~~~~~~~~~~~i~~~~~~~~~ 159 (271)
|++|||++|+++.+++.++.+.+++++|||||||++++ |++|+||++++..+++++ +.|.+.++.+.+++....+
T Consensus 93 L~~GDP~iy~~~~~l~~~~~~~gi~vevIPGiSs~~aa~a~~G~pl~~~~~~~sv~~----~~~~~~~~~~~~~l~~~~~ 168 (268)
T 1vhv_A 93 LVPGDPMVATTHSAIKLEAERKGVKTRIIHGASISTAVCGLTGLHNYRFGKSATVSW----HRSQTPVNVIKANRSIDAH 168 (268)
T ss_dssp EESBCTTSSSHHHHHHHHHHHTTCCEEEECCCCHHHHHHHHHCCCGGGBCCCEEECS----SCCSHHHHHHHHHHHTTCB
T ss_pred EeCCCCcccCcHHHHHHHHHHCCCcEEEECCccHHHHHHHHcCCCcccCcceEEEEe----cCCCchHHHHHHHhccCCC
Confidence 99999999999999887777789999999999999976 999999999888777643 3344445555545544566
Q ss_pred eeeeecccCCccchHHHhhcccccCCeeeccHHHHHHHHHHhhhcCCCCCCCCeEEEEeccCCCCeEEEEeeccchhhcc
Q psy11146 160 TLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATSLSNMTETD 239 (271)
Q Consensus 160 ~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~ 239 (271)
+++++|.. .-+|+++++++.|.++++ +++ ++++++++++|+++|+++.++++++.+..
T Consensus 169 tlvl~d~~------------------~~~~~~~~~~~~L~~l~~---~~~-~~~v~v~~~l~~~~E~i~~~tl~el~~~~ 226 (268)
T 1vhv_A 169 TLLFLDLH------------------PEPMTIGHAVENLIAEDA---QMK-DLYAVGIARAGSGEEVVKCDRLENLKKID 226 (268)
T ss_dssp EEEEECCS------------------SSCCCHHHHHHHHHHHCG---GGG-GSEEEEEESTTSSSCEEEEEEGGGGGGSC
T ss_pred eEEEEcCc------------------hhhcCHHHHHHHHHHHHh---cCC-CcEEEEEEcCCCCceEEEEEEHHHHHHhh
Confidence 66665532 116899999999998664 555 88999999999999999999999997755
Q ss_pred CCCCceEEEEecc-CCcchHHHHHhhhccC
Q psy11146 240 MGKPLHSLIIVGN-IHPVESEFLAQYSTQE 268 (271)
Q Consensus 240 ~~~~~~sliivg~-~~~~~~~~l~~~~~~~ 268 (271)
+..++++++|+|+ .+..|+++|+||+..|
T Consensus 227 ~~~~~~~liI~~~~~~~~e~~~l~~~~~~~ 256 (268)
T 1vhv_A 227 FGKPLHVMVVLAKTLHFMEFECLREFADAP 256 (268)
T ss_dssp CCSSCEEEEECCSSCCHHHHHHHHHHSCCC
T ss_pred cCCCCeEEEEECCcCCHHHHHHHHHHhcCc
Confidence 4344445666687 5668999999998765
No 4
>2ybo_A Methyltransferase; SUMT, NIRE, heme D1 biosynthesis; HET: SAH; 2.00A {Pseudomonas aeruginosa} PDB: 2ybq_A*
Probab=100.00 E-value=4.3e-41 Score=296.98 Aligned_cols=236 Identities=17% Similarity=0.200 Sum_probs=168.8
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhc-Ccceeecc------hhhHHHHHHHHHHhc
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFY-GKDIIIAD------REMVESASDVILHNA 73 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~-~~~v~~~~------~~~~~~~~~~i~~~~ 73 (271)
|||+||+|||||++||+||+++|++||+|+++... + .++++.+. +.+..... ...+++..+.+++.+
T Consensus 26 ~l~lVG~GpGdp~lLTlrA~~~L~~ADvV~~d~~~-----~-~~il~~~~~~~~~i~~~k~~~~~~~~~~~i~~~l~~~~ 99 (294)
T 2ybo_A 26 SVALVGAGPGDPGLLTLRAWALLQQAEVVVYDRLV-----A-RELIALLPESCQRIYVGKRCGHHSLPQEEINELLVRLA 99 (294)
T ss_dssp CEEEEEEESSCGGGSCHHHHHHHTTCSEEEECTTS-----C-HHHHHHSCTTSEEEECC--------CHHHHHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHcCCEEEEcCCC-----C-HHHHHhcccCCeEEecccccccccCCHHHHHHHHHHHH
Confidence 69999999999999999999999999999996432 2 45555332 22222111 113455556688888
Q ss_pred CC-CCEEEEecCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHHHH-HHcCCccccccceeEEeeecCCCCCCchhhHHH
Q psy11146 74 DV-EDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAA-GCCGLQLYNFGETVSIPFWTESWKPDSFYDKIV 151 (271)
Q Consensus 74 ~~-~~V~~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~a~-a~~g~~l~~~~~~v~i~~~~~~~~~~~~~~~i~ 151 (271)
++ ++|++|++|||++|+++.+++..+.+.+++++|||||||++++ |++|+||+..+.+.++.+.++|+++.+.
T Consensus 100 ~~G~~Vv~L~~GDP~i~g~g~~l~~~l~~~gi~vevIPGiSS~~aa~a~~Giplt~~~~~~~~~~~sg~~~~~~~----- 174 (294)
T 2ybo_A 100 RQQRRVVRLKGGDPFIFGRGAEELERLLEAGVDCQVVPGVTAASGCSTYAGIPLTHRDLAQSCTFVTGHLQNDGR----- 174 (294)
T ss_dssp HTTCCEEEEEEBCTTSSSSHHHHHHHHHHTTCCEEEECCCCHHHHHHHHTTCCSCBTTTBSCEEEEECSCCTTSS-----
T ss_pred HCCCeEEEEcCCCCCccCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHcCCCcccCCCCcEEEEEcccCCcccc-----
Confidence 77 9999999999999999999888777889999999999999976 9999999876654455567777653310
Q ss_pred hhhccCcceeeeecccCCccchHHHhhcccccCCeeeccHH---HHHHHHHHhhhcCCCCCCCCeEEEEeccCCCCeEEE
Q psy11146 152 ENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVS---QAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIV 228 (271)
Q Consensus 152 ~~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~---~~~~~L~~~~~~~~~~~~~~~v~v~~~l~~~~E~i~ 228 (271)
....|+.++....++ ++||..+ ++++.|++ .|+++++++++++++|+++|+++
T Consensus 175 -----------------~~~~~~~l~~~~~tl--Vl~~~~~~~~~i~~~L~~-----~G~~~~~~v~v~~~l~~~~E~i~ 230 (294)
T 2ybo_A 175 -----------------LDLDWAGLARGKQTL--VFYMGLGNLAEIAARLVE-----HGLASDTPAALVSQGTQAGQQVT 230 (294)
T ss_dssp -----------------CCCCHHHHTSSSCEE--EEESCGGGHHHHHHHHHH-----TTCCTTCEEEEEESTTSTTCEEE
T ss_pred -----------------hhhHHHHHhcCCCeE--EEECcHHHHHHHHHHHHh-----cCCCCCCEEEEEEeCCCCceEEE
Confidence 011244444433333 4555543 45566665 57888999999999999999999
Q ss_pred Eeeccchhhc--cCCCCceEEEEeccCCcch----HHHHHhhhccCCCC
Q psy11146 229 ATSLSNMTET--DMGKPLHSLIIVGNIHPVE----SEFLAQYSTQELTG 271 (271)
Q Consensus 229 ~~~l~~l~~~--~~~~~~~sliivg~~~~~~----~~~l~~~~~~~~~~ 271 (271)
.++++++.+. +...++.+++++|+.+... .+.++||+++||||
T Consensus 231 ~~tl~el~~~~~~~~~~~~~vivIg~~~~~~~~~~~~~~~~~~~~~l~~ 279 (294)
T 2ybo_A 231 RGALAELPALARRYQLKPPTLIVVGQVVALFAERAMAHPSYLGAGSPVS 279 (294)
T ss_dssp EEEGGGHHHHHHHTTCCSSEEEEESTHHHHTTTSCCSSTTCCCC-----
T ss_pred EeeHHHHHHHHHhcCCCCCEEEEECchhhhccccchhhcccccccCccc
Confidence 9999999754 1123445999999865433 15689999999997
No 5
>1wde_A Probable diphthine synthase; structural genomics, conserved hypothetical protein, riken S genomics/proteomics initiative, RSGI, transferase; 2.00A {Aeropyrum pernix} SCOP: c.90.1.1
Probab=100.00 E-value=3.6e-41 Score=297.66 Aligned_cols=245 Identities=29% Similarity=0.359 Sum_probs=191.9
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcc----cccccCchhHhhhhc-CcceeecchhhHHHHHHHHHHhcCC
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYT----SILIDDIIDDMKSFY-GKDIIIADREMVESASDVILHNADV 75 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~----s~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~i~~~~~~ 75 (271)
|||+||+| |||++||+||+++|++||+|+++.+. +.+ .+.+..+. .++++..+++..++..+.+++.++.
T Consensus 9 ~l~lVG~G-Gd~~lLTl~A~~~L~~ADvV~~~~~~~~~~s~~----~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~~g 83 (294)
T 1wde_A 9 TLLLVGWG-YAPGMQTLEALDAVRRADVVYVESYTMPGSSWL----YKSVVEAAGEARVVEASRRDLEERSREIVSRALD 83 (294)
T ss_dssp EEEEEECB-SSTTCCCHHHHHHHHHCSEEEEECSSSTTCHHH----HHHHHHHHTSSSEEECCHHHHHTSHHHHTCCSSC
T ss_pred EEEEEECC-CChHHhhHHHHHHHHhCCEEEEecccccccccc----hHHHHHhccCCeEEecChHHHHHHHHHHHHHhCC
Confidence 59999999 99999999999999999999998664 221 12232222 3455544444445555667776666
Q ss_pred CCEEEEecCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHHHH-HHcCCccccccceeEEeeecCCCCCCchhhHHHhhh
Q psy11146 76 EDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAA-GCCGLQLYNFGETVSIPFWTESWKPDSFYDKIVENK 154 (271)
Q Consensus 76 ~~V~~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~a~-a~~g~~l~~~~~~v~i~~~~~~~~~~~~~~~i~~~~ 154 (271)
++||+|++|||++|+++.+++.++.+.|++++|||||||++++ |++|+||++++.++++++.++|+.|...++.+.+++
T Consensus 84 ~~Vv~L~~GDP~v~g~~~~l~~~l~~~gi~veviPGiSs~~aa~a~~Gipl~~~~~~~~v~~~~~~~~p~~~~~~l~~~l 163 (294)
T 1wde_A 84 AVVAVVTAGDPMVATTHSSLAAEALEAGVAVRYIPGVSGVQAARGATMLSFYRFGGTVTLPGPWRGVTPISVARRIYLNL 163 (294)
T ss_dssp CEEEEEESBCTTSSSSHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHTCCGGGEEEEEEECCGGGCCCCHHHHHHHHHHH
T ss_pred CCEEEEeCCCCccccCHHHHHHHHHHCCCCEEEECCHhHHHHHHHHhCCCccCCCceEEEEeccCcccCCChHHHHHHHH
Confidence 8999999999999999999988877789999999999999976 999999999888888877777777766677777767
Q ss_pred ccCcceeeeecccCCccchHHHhhcccccCCeeeccHHHHHHHHHHhhhc-----C-CCC-CCCCeEEEEeccCCCCeEE
Q psy11146 155 SRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKT-----K-PGL-STADLAVGIARVGSETQHI 227 (271)
Q Consensus 155 ~~~~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~~~~~-----~-~~~-~~~~~v~v~~~l~~~~E~i 227 (271)
..+.+++++++.... .+||++.++++.|.++.+. . .|+ ++++++++++++|+++|++
T Consensus 164 ~~~~~tlvl~~~~~~----------------~~~m~~~~i~~~L~~l~~~l~~~~~~~G~~~~~~~v~v~~~lg~~~E~i 227 (294)
T 1wde_A 164 CAGLHTTALLDVDER----------------GVQLSPGQGVSLLLEADREYAREAGAPALLARLPSVLVEAGAGGGHRVL 227 (294)
T ss_dssp HHTCEEEEEECBCTT----------------SCBCCHHHHHHHHHHHHHHHHHHHTSCCCGGGSCEEEEECCGGGCCEEE
T ss_pred hcCCCeEEEEecccc----------------cccccHHHHHHHHHHHHHhhhccccccCcCCCCCEEEEEEeCCCCCcEE
Confidence 667788888876421 4689999999999853321 0 054 6789999999999999999
Q ss_pred EEeeccchhhccCCCCceEEEEe-ccCCcchHHHHHhhhcc
Q psy11146 228 VATSLSNMTETDMGKPLHSLIIV-GNIHPVESEFLAQYSTQ 267 (271)
Q Consensus 228 ~~~~l~~l~~~~~~~~~~sliiv-g~~~~~~~~~l~~~~~~ 267 (271)
+.++++++.+.++..++ +++++ |+.+..|+++|.||...
T Consensus 228 ~~~tl~el~~~~~~~~~-~~iiI~g~~~~~e~~~l~~~~~~ 267 (294)
T 1wde_A 228 YWSSLERLSTADVEGGV-YSIVIPARLSGVEEWLLAAASGQ 267 (294)
T ss_dssp EESCHHHHHTCCCCCCC-CEEEECSSCCHHHHHHHHHHTTC
T ss_pred EEeeHHHHhhcccCCCC-EEEEEeCCCchHHHHHHHHHhcc
Confidence 99999999875552333 55555 99988999999999765
No 6
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis, cobalamin, SAM, SAH, uroporphyrin methyltransferase; HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP: c.90.1.1
Probab=100.00 E-value=3.5e-39 Score=283.09 Aligned_cols=231 Identities=16% Similarity=0.217 Sum_probs=169.5
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhc-Ccceeecc------hhhHHHHHHHHHHhc
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFY-GKDIIIAD------REMVESASDVILHNA 73 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~-~~~v~~~~------~~~~~~~~~~i~~~~ 73 (271)
|||+||+|||||++||+||+++|++||+|+|+...+ .++++.+. +++++... ...+++..+.+++++
T Consensus 16 ~l~lVG~GpGd~~lLTl~A~~~L~~ADvV~~d~~~~------~~ll~~~~~~~~~~~~~k~~~~~~~~~~~i~~~l~~~~ 89 (280)
T 1s4d_A 16 SVWLVGAGPGDPGLLTLHAANALRQADVIVHDALVN------EDCLKLARPGAVLEFAGKRGGKPSPKQRDISLRLVELA 89 (280)
T ss_dssp CEEEEECBSSCTTSSBHHHHHHHHHCSEEEECSCSC------TTGGGGSSTTCCEEECSCCC--CCCCHHHHHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCEEEEcCCCC------HHHHHhccCCCEEEeccccccccccCHHHHHHHHHHHH
Confidence 699999999999999999999999999999964421 44454331 33333211 124556666688888
Q ss_pred CC-CCEEEEecCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHHHH-HHcCCccccccceeEEeeecCCCCCCchhhHHH
Q psy11146 74 DV-EDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAA-GCCGLQLYNFGETVSIPFWTESWKPDSFYDKIV 151 (271)
Q Consensus 74 ~~-~~V~~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~a~-a~~g~~l~~~~~~v~i~~~~~~~~~~~~~~~i~ 151 (271)
++ ++|++|++|||++|+++.+++..+.+.|++++|||||||++++ |++|+||++.+.+.++.+.+.|.++...
T Consensus 90 ~~G~~Vv~L~~GDP~i~g~g~~l~~~l~~~gi~veviPGiSs~~aa~a~~Gipl~~~~~~~~~~~~~~~~~~~~~----- 164 (280)
T 1s4d_A 90 RAGNRVLRLKGGDPFVFGRGGEEALTLVEHQVPFRIVPGITAGIGGLAYAGIPVTHREVNHAVTFLTGHDSSGLV----- 164 (280)
T ss_dssp HTTCCEEEEESBCTTSSSSHHHHHHHHHTTTCCEEEECCCCTTTHHHHHTTCCSCCTTTCSEEEEEECCC----------
T ss_pred hCCCeEEEEcCCCCccccCHHHHHHHHHHCCCCEEEEcCccHHHHHHHHcCCCccCCCcccEEEEECCcCCcccc-----
Confidence 77 9999999999999999999888777889999999999999976 9999999865554444566777654210
Q ss_pred hhhccCcceeeeecccCCccchHHHhhcccccCCeeecc---HHHHHHHHHHhhhcCCCCCCCCeEEEEeccCCCCeEEE
Q psy11146 152 ENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMS---VSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIV 228 (271)
Q Consensus 152 ~~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~---~~~~~~~L~~~~~~~~~~~~~~~v~v~~~l~~~~E~i~ 228 (271)
.....|+.+++...++ ++||. +.++++.|++ .|+++++++++++++|+++|+++
T Consensus 165 ----------------~~~~~~~~l~~~~~tl--Vl~~~~~~~~~i~~~L~~-----~G~~~~~~v~v~~~l~~~~E~i~ 221 (280)
T 1s4d_A 165 ----------------PDRINWQGIASGSPVI--VMYMAMKHIGAITANLIA-----GGRSPDEPVAFVCNAATPQQAVL 221 (280)
T ss_dssp ------------------CCCHHHHHTTCSEE--EEESCSTTHHHHHHHHHH-----TTCCTTCEEEEEESTTSTTCEEE
T ss_pred ----------------cccccHHHHhCCCCeE--EEECchhhHHHHHHHHHh-----cCCCCCCEEEEEEeCCCCCeEEE
Confidence 0001233333332233 44444 3456666666 57888999999999999999999
Q ss_pred Eeeccchhhc----cCCCCceEEEEeccCCcchHHHHHhhhccC
Q psy11146 229 ATSLSNMTET----DMGKPLHSLIIVGNIHPVESEFLAQYSTQE 268 (271)
Q Consensus 229 ~~~l~~l~~~----~~~~~~~sliivg~~~~~~~~~l~~~~~~~ 268 (271)
.++++++.+. +++.+ +++++|+.+. .++.++||+++|
T Consensus 222 ~~tl~el~~~~~~~~~~~~--~vivig~~~~-~~~~~~~~~~~~ 262 (280)
T 1s4d_A 222 ETTLARAEADVAAAGLEPP--AIVVVGEVVR-LRAALDWIGALD 262 (280)
T ss_dssp EEETTTHHHHHHHHTCCSS--EEEEESGGGG-GHHHHCHHHHHT
T ss_pred EecHHHHHHHHHhcCCCCC--EEEEECchhc-hhhhccchhccc
Confidence 9999999764 45555 8999998866 457789999887
No 7
>4e16_A Precorrin-4 C(11)-methyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.49A {Clostridium difficile}
Probab=100.00 E-value=2.7e-38 Score=273.64 Aligned_cols=223 Identities=20% Similarity=0.204 Sum_probs=159.8
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhc-CcceeecchhhHHHHHHHHHHhcCC-CCE
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFY-GKDIIIADREMVESASDVILHNADV-EDV 78 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~i~~~~~~-~~V 78 (271)
+||+||+|||||++||+||+++|++||+|++++.. . . ..+++.+. ++++.......+++..+.+.+++++ ++|
T Consensus 6 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~-~---~-~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~V 80 (253)
T 4e16_A 6 KVHFVGAGPGDKELITLKGYKLLSNADVVIYAGSL-V---N-PELLEYCKEDCQIHNSAHMDLQEIIDVMREGIENNKSV 80 (253)
T ss_dssp CEEEEECBSSCGGGSCHHHHHHHHHCSEEEECTTT-S---C-GGGGGGSCTTCEEEEGGGCCHHHHHHHHHHHHHTTCCE
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHhCCEEEEeCCC-C---C-HHHHhhcCCCCEEEecCCCCHHHHHHHHHHHHHCCCcE
Confidence 59999999999999999999999999999995331 1 1 33444332 3343322223456666778888877 999
Q ss_pred EEEecCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHHHH-HHcCCccccccceeEEeeecCCCCCCchhhHHHhhhccC
Q psy11146 79 ALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAA-GCCGLQLYNFGETVSIPFWTESWKPDSFYDKIVENKSRG 157 (271)
Q Consensus 79 ~~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~a~-a~~g~~l~~~~~~v~i~~~~~~~~~~~~~~~i~~~~~~~ 157 (271)
++|++|||++|+++.+++..+.+.|++++++|||||++++ |++|+||++.+.+-++.+.+.|++...
T Consensus 81 ~~l~~GDP~i~~~~~~l~~~l~~~gi~veviPGiSS~~aa~a~~G~plt~~~~~~~~~~~~~~g~~~~------------ 148 (253)
T 4e16_A 81 VRLQTGDFSIYGSIREQVEDLNKLNIDYDCTPGVSSFLGAASSLGVEYTVPEISQSVIITRMEGRTPV------------ 148 (253)
T ss_dssp EEEESBCTTTTCCHHHHHHHHHHHTCCEEEECCCCHHHHHHHHHTCCSCBTTTBSCEEEEEC---CCC------------
T ss_pred EEEeCCCCccccCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHhCCCcccCCccceEEEEeccCCCCc------------
Confidence 9999999999999999887777779999999999999976 999999985443333345555654311
Q ss_pred cceeeeecccCCccchHHHhhcccccCCeeeccH---HHHHHHHHHhhhcCCCCCCCCeEEEEeccCCCCeEEEEeeccc
Q psy11146 158 LHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSV---SQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATSLSN 234 (271)
Q Consensus 158 ~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~---~~~~~~L~~~~~~~~~~~~~~~v~v~~~l~~~~E~i~~~~l~~ 234 (271)
.....|+.+++...++ ++||++ .++++.|.+ .++++++++++++++|+++|+++++++++
T Consensus 149 ----------~~~~~~~~l~~~~~t~--vl~~~~~~~~~i~~~L~~-----~g~~~~~~v~v~~~l~~~~E~i~~~tl~e 211 (253)
T 4e16_A 149 ----------PEKESIQSYAKHQTSM--VIFLSVQEIEKVVSKLLE-----GGYPKDTPIAVIYKATWADEKIVKGTLSD 211 (253)
T ss_dssp ----------CGGGSHHHHHTTCSEE--EEEECSTTHHHHHHHHHH-----TTCCTTCEEEEEESTTSTTCEEEEEETTT
T ss_pred ----------chHHHHHHHhcCCCeE--EEECcHHHHHHHHHHHHh-----cCCCCCCeEEEEEeCCCCCcEEEEEEHHH
Confidence 0012345555443344 556653 456666666 68888999999999999999999999999
Q ss_pred hhhc----cCCCCceEEEEeccCCcchHH
Q psy11146 235 MTET----DMGKPLHSLIIVGNIHPVESE 259 (271)
Q Consensus 235 l~~~----~~~~~~~sliivg~~~~~~~~ 259 (271)
+.+. ....+ ++++||+.+..+..
T Consensus 212 l~~~~~~~~~~~~--~vivIg~~~~~~~~ 238 (253)
T 4e16_A 212 IAVKVKENNINKT--ALIMVGRFLGEEYN 238 (253)
T ss_dssp HHHHHHHTCCCSC--EEEEESGGGGC---
T ss_pred HHHHHHhCCCCCC--EEEEECcccccccc
Confidence 9763 34455 99999987654433
No 8
>1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase, cobalamin biosynth methyltransferase; HET: SAH; 2.40A {Bacillus megaterium} SCOP: c.90.1.1 PDB: 2cbf_A*
Probab=100.00 E-value=1.5e-37 Score=273.39 Aligned_cols=231 Identities=18% Similarity=0.220 Sum_probs=162.3
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhc-CcceeecchhhHHHHHHHHHHhcCC-CCE
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFY-GKDIIIADREMVESASDVILHNADV-EDV 78 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~i~~~~~~-~~V 78 (271)
|||+||+|||||++||+||+++|++||+|+|++. . ++ .+.++.+. ++++.......+++..+.+++.+++ ++|
T Consensus 22 ~l~lVG~GpGd~~~LT~~A~~~L~~AdvV~~~~~--~--~~-~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~V 96 (285)
T 1cbf_A 22 KLYIIGAGPGDPDLITVKGLKLLQQADVVLYADS--L--VS-QDLIAKSKPGAEVLKTAGMHLEEMVGTMLDRMREGKMV 96 (285)
T ss_dssp EEEEEECBSSCGGGSCHHHHHHHHHCSEEEECTT--T--SC-HHHHTTSCTTCEEEECTTCCHHHHHHHHHHHHTTTCCE
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCEEEEeCC--C--CC-HHHHHhcCCCCEEEecCCCCHHHHHHHHHHHHHCCCeE
Confidence 5999999999999999999999999999999533 1 11 45554432 4554433333456677778888887 999
Q ss_pred EEEecCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHHHH-HHcCCccccccceeEEeeecCCCCCCchhhHHHhhhccC
Q psy11146 79 ALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAA-GCCGLQLYNFGETVSIPFWTESWKPDSFYDKIVENKSRG 157 (271)
Q Consensus 79 ~~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~a~-a~~g~~l~~~~~~v~i~~~~~~~~~~~~~~~i~~~~~~~ 157 (271)
++|++|||++|+++.+++.++.+.+++++|+|||||++++ |++|+||+..+.+.++.+.+.|++....
T Consensus 97 v~L~~GDP~i~g~~~~l~~~l~~~gi~veviPGiSS~~aa~a~~G~pl~~~~~~~~~~~~~~~g~~~~~----------- 165 (285)
T 1cbf_A 97 VRVHTGDPAMYGAIMEQMVLLKREGVDIEIVPGVTSVFAAAAAAEAELTIPDLTQTVILTRAEGRTPVP----------- 165 (285)
T ss_dssp EEEESBCTTTTCCCHHHHHHHHHTTCEEEEECCCCHHHHHHHHTTCCSCBTTTBCCEEEEECCSSSCCC-----------
T ss_pred EEEeCCCccccccHHHHHHHHHHCCCcEEEECCchHHHHHHHHcCCCcccCCcceeEEEeccCCCCCcc-----------
Confidence 9999999999999999987777789999999999999976 9999999866544444455556542110
Q ss_pred cceeeeecccCCccchHHHhhcccccCCeeecc---HHHHHHHHHHhhhcCCCCCCCCeEEEEeccCCCCeEEEEeeccc
Q psy11146 158 LHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMS---VSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATSLSN 234 (271)
Q Consensus 158 ~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~---~~~~~~~L~~~~~~~~~~~~~~~v~v~~~l~~~~E~i~~~~l~~ 234 (271)
....|++++....++ ++++. +.++++.|.+ .++++++++++++++|+++|+++.+++++
T Consensus 166 -----------~~~~l~~l~~~~~tl--vl~~~~~~~~~i~~~L~~-----~g~~~~~~v~v~~~lg~~~E~i~~~tl~e 227 (285)
T 1cbf_A 166 -----------EFEKLTDLAKHKCTI--ALFLSSTLTKKVMKEFIN-----AGWSEDTPVVVVYKATWPDEKIVRTTVKD 227 (285)
T ss_dssp -----------GGGCHHHHHTTCSEE--EEESCTTCHHHHHHHHHH-----TTCCTTCEEEEEESTTSTTCEEEEEEGGG
T ss_pred -----------hHHHHHHHhcCCCeE--EEECcHHHHHHHHHHHHh-----cCCCCCCeEEEEEECCcCCcEEEEecHHH
Confidence 011233443332333 44544 4456666665 58888999999999999999999999999
Q ss_pred hhhc--cCCCCceEEEEeccCCcchHHHHHhhhccC
Q psy11146 235 MTET--DMGKPLHSLIIVGNIHPVESEFLAQYSTQE 268 (271)
Q Consensus 235 l~~~--~~~~~~~sliivg~~~~~~~~~l~~~~~~~ 268 (271)
+.+. +...++.+++++|+.... .+.|+..+|
T Consensus 228 l~~~~~~~~~~~~~viiig~~~~~---~~~~~~GLp 260 (285)
T 1cbf_A 228 LDDAMRTNGIRKQAMILAGWALDP---ATPWLSGLG 260 (285)
T ss_dssp HHHHHHHTTCCSSEEEEESGGGCC------------
T ss_pred HHHHHHhcCCCCcEEEEEchHhcc---ccchhhccc
Confidence 9753 223455699999976542 255655444
No 9
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A {Rhodobacter capsulatus} PDB: 3nei_A
Probab=100.00 E-value=2.6e-37 Score=268.85 Aligned_cols=219 Identities=21% Similarity=0.247 Sum_probs=161.1
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhc-CcceeecchhhHHHHHHHHHHhcCC-CCE
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFY-GKDIIIADREMVESASDVILHNADV-EDV 78 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~i~~~~~~-~~V 78 (271)
|||+||+|||||++||+||+++|++||+|++++. . ++ .++++.+. +++++......+++.++.+++++++ ++|
T Consensus 5 ~l~iVG~GpG~~~lLT~~A~~~L~~AdvV~~~~~--~--~~-~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~G~~V 79 (264)
T 3ndc_A 5 TVHFIGAGPGAADLITIRGRDLIASCPVCLYAGS--L--VP-EALLAHCPPGAKIVNTAPMSLDAIIDTIAEAHAAGQDV 79 (264)
T ss_dssp CEEEEECBSSCGGGSBHHHHHHHHHCSEEEECST--T--SC-GGGGGGSCTTCEEEECTTSCHHHHHHHHHHHHHHTCCE
T ss_pred EEEEEEcCCCChHHHHHHHHHHHHcCCEEEEECC--C--CC-HHHHhhcCCCCEEEecCCCCHHHHHHHHHHHHHCCCeE
Confidence 6999999999999999999999999999999533 1 11 34454433 4554433323456666778888776 999
Q ss_pred EEEecCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHHHH-HHcCCccccccceeEEeeecCCCCCCchhhHHHhhhccC
Q psy11146 79 ALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAA-GCCGLQLYNFGETVSIPFWTESWKPDSFYDKIVENKSRG 157 (271)
Q Consensus 79 ~~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~a~-a~~g~~l~~~~~~v~i~~~~~~~~~~~~~~~i~~~~~~~ 157 (271)
|+|++|||++|+++.+++..+.+.|++++|+|||||++++ |++|+||++.+.+.++.+.+.|++... +
T Consensus 80 a~L~~GDP~iyg~~~~l~~~l~~~gi~veviPGiSs~~aaaA~lG~plt~~~~~~~~~~~s~~~~~~~-~---------- 148 (264)
T 3ndc_A 80 ARLHSGDLSIWSAMGEQLRRLRALNIPYDVTPGVPSFAAAAATLGAELTLPGVAQSVILTRTSGRASA-M---------- 148 (264)
T ss_dssp EEEESBCTTSSCSHHHHHHHHHHTTCCEEEECCCCHHHHHHHHHTCCSCBTTTBCCEEEEECCTTTCC-C----------
T ss_pred EEEeCCCCccccHHHHHHHHHHhCCCCEEEeCCHHHHHHHHHHhCCCccCCCceeEEEEEeccCCCCC-c----------
Confidence 9999999999999999887777889999999999999976 999999985444344445566654210 0
Q ss_pred cceeeeecccCCccchHHHhhcccccCCeeeccHHH---HHHHHHHhhhcCCCCCCCCeEEEEeccCCCCeEEEEeeccc
Q psy11146 158 LHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQ---AAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATSLSN 234 (271)
Q Consensus 158 ~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~---~~~~L~~~~~~~~~~~~~~~v~v~~~l~~~~E~i~~~~l~~ 234 (271)
...++|+.+++...++ ++|+..++ +++.|++ .+++++++++++++|+++|+++.+++++
T Consensus 149 ----------~~~~~l~~l~~~~~tl--vl~~~~~~~~~i~~~L~~------~~~~~~~v~v~~~l~~~~E~i~~~tl~e 210 (264)
T 3ndc_A 149 ----------PAGETLENFARTGAVL--AIHLSVHVLDEVVQKLVP------HYGEDCPVAIVWRASWPDQRVVRATLAT 210 (264)
T ss_dssp ----------CTTCCHHHHHTTTCEE--EEESCGGGHHHHHHHHHH------HHCTTCEEEEEESTTSTTCEEEEEEGGG
T ss_pred ----------chHHHHHHHhcCCCcE--EEecCHHHHHHHHHHHHh------hCCCCCEEEEEEECCCCCeEEEEEEHHH
Confidence 1112466666554444 66766544 4444544 3567899999999999999999999999
Q ss_pred hhhc---cCCCCceEEEEeccCCc
Q psy11146 235 MTET---DMGKPLHSLIIVGNIHP 255 (271)
Q Consensus 235 l~~~---~~~~~~~sliivg~~~~ 255 (271)
+.+. .++. .+++|+|+...
T Consensus 211 l~~~~~~~~~~--~~viivg~~~~ 232 (264)
T 3ndc_A 211 LQTSLGAELER--TALILVGRSLA 232 (264)
T ss_dssp SCGGGSSSSCC--CEEEEESGGGS
T ss_pred HHHHHhccCCc--cEEEEEcCcCC
Confidence 9863 3444 49999997543
No 10
>1ve2_A Uroporphyrin-III C-methyltransferase; heme, biosynthesis, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: c.90.1.1
Probab=100.00 E-value=1.3e-37 Score=266.49 Aligned_cols=216 Identities=21% Similarity=0.247 Sum_probs=159.5
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhcCcceeecc------hhhHHHHHHHHHHhcC
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKDIIIAD------REMVESASDVILHNAD 74 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~~~~v~~~~------~~~~~~~~~~i~~~~~ 74 (271)
|||+||+|||||++||+||+++|++||+|+++.+. . .+.++.+ ++++.... ...+++..+.+++.++
T Consensus 4 ~l~vVG~GpG~~~~LT~~A~~~L~~advv~~~~~~-----~-~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 76 (235)
T 1ve2_A 4 KVYLVGAGFGGPEHLTLKALRVLEVAEVVLHDRLV-----H-PGVLALA-KGELVPVGKEGYGGKTPQEAITARLIALAR 76 (235)
T ss_dssp EEEEEECBSSSGGGSBHHHHHHHHHCSEEEECTTS-----C-HHHHTTC-CSEEEEC-------CCCHHHHHHHHHHHHH
T ss_pred EEEEEeeCCCCHHHHHHHHHHHHHhCCEEEEeCCC-----C-HHHHHhh-CcEEEEecccCcccccCHHHHHHHHHHHHH
Confidence 49999999999999999999999999999996442 1 4555543 44443211 1235566666888887
Q ss_pred C-CCEEEEecCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHHHH-HHcCCccccccceeEEeeecCCCCCCchhhHHHh
Q psy11146 75 V-EDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAA-GCCGLQLYNFGETVSIPFWTESWKPDSFYDKIVE 152 (271)
Q Consensus 75 ~-~~V~~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~a~-a~~g~~l~~~~~~v~i~~~~~~~~~~~~~~~i~~ 152 (271)
+ ++|++|++|||++|+++.+++..+.+.+++++++|||||++++ |++|+||++.+.+.++.+.++|. +.+
T Consensus 77 ~g~~V~~l~~GDP~i~~~~~~l~~~l~~~gi~v~viPGiSs~~aa~a~~g~pl~~~~~~~~~~~~s~~~-~~~------- 148 (235)
T 1ve2_A 77 EGRVVARLKGGDPMVFGRGGEEALALRRAGIPFEVVPGVTSAVGALSALGLPLTHRGLARSFAVATGHD-PAL------- 148 (235)
T ss_dssp TTCEEEEEESBCTTSSTTHHHHHHHHHHHTCCEEEECCCCTTHHHHHHTTCCSCBTTTBSCEEEEESSC-TTS-------
T ss_pred cCCeEEEEcCCCCCcccCHHHHHHHHHHCCCCEEEECCHhHHHHHHHHcCCCcccCCcccEEEEeCCCC-chh-------
Confidence 7 8999999999999999999887776778999999999999975 99999998765434444566665 431
Q ss_pred hhccCcceeeeecccCCccchHHHhhcccccCCeeeccHHH---HHHHHHHhhhcCCCCCCCCeEEEEeccCCCCeEEEE
Q psy11146 153 NKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQ---AAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVA 229 (271)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~---~~~~L~~~~~~~~~~~~~~~v~v~~~l~~~~E~i~~ 229 (271)
++. +.+++ ++++++++ +++.|.+ ++++++++++++++|+++|+++.
T Consensus 149 ~l~-~~~t~------------------------vl~~~~~~~~~i~~~L~~------g~~~~~~v~v~~~l~~~~E~i~~ 197 (235)
T 1ve2_A 149 PLP-RADTL------------------------VLLMPLHTLGGLKERLLE------RFPPETPLALLARVGWPGEAVRL 197 (235)
T ss_dssp CCC-BCSEE------------------------EEEC------CHHHHHHT------TSCTTSEEEEEESTTSTTCEEEE
T ss_pred hhc-cCCeE------------------------EEEcChhhHHHHHHHHHh------cCCCCCeEEEEEECCcCCeEEEE
Confidence 111 22232 34444443 3343433 78788999999999999999999
Q ss_pred eeccchhhc--cCCCCceEEEEeccCCcchHHHHHhhh
Q psy11146 230 TSLSNMTET--DMGKPLHSLIIVGNIHPVESEFLAQYS 265 (271)
Q Consensus 230 ~~l~~l~~~--~~~~~~~sliivg~~~~~~~~~l~~~~ 265 (271)
++++++.+. +++.+ +++++|+.+. .++.++||+
T Consensus 198 ~~l~el~~~~~~~~~~--~vivig~~~~-~~~~~~~~~ 232 (235)
T 1ve2_A 198 GRVEDLPGLGEGLPSP--ALLVVGKVVG-LYGELLPKD 232 (235)
T ss_dssp EEGGGTTTTTTTCCSS--EEEEESGGGG-GHHHHSSCC
T ss_pred EEHHHHHHHhcCCCCC--EEEEEChHhh-hhhhccccc
Confidence 999999765 55555 8999998875 467789986
No 11
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=100.00 E-value=2.5e-37 Score=288.38 Aligned_cols=229 Identities=21% Similarity=0.262 Sum_probs=168.5
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhc-Ccceeecc------hhhHHHHHHHHHHhc
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFY-GKDIIIAD------REMVESASDVILHNA 73 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~-~~~v~~~~------~~~~~~~~~~i~~~~ 73 (271)
|||+||+|||||++||+||+++|++||+|+|+... + .++++.+. +++.+... ...+++..+.+++++
T Consensus 217 ~l~lVG~GpGd~~lLTlrA~~~L~~ADvV~~d~~~-----~-~~il~~~~~~~~~~~~~k~~~~~~~~~~~i~~~l~~~~ 290 (457)
T 1pjq_A 217 EVVLVGAGPGDAGLLTLKGLQQIQQADIVVYDRLV-----S-DDIMNLVRRDADRVFVGKRAGYHCVPQEEINQILLREA 290 (457)
T ss_dssp EEEEEECBSSCGGGSBHHHHHHHHHCSEEEECTTS-----C-HHHHTTSCTTSEEEECSCC---CCCTTHHHHHHHHHHH
T ss_pred EEEEEeCCCCChHHccHHHHHHHHhCCEEEEeCCC-----C-HHHHhhcccCCEEEeccccccccCCCHHHHHHHHHHHH
Confidence 58999999999999999999999999999997442 2 45555332 23322211 113555666688888
Q ss_pred CC-CCEEEEecCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHHHH-HHcCCccccccceeEEeeecCCCCCCchhhHHH
Q psy11146 74 DV-EDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAA-GCCGLQLYNFGETVSIPFWTESWKPDSFYDKIV 151 (271)
Q Consensus 74 ~~-~~V~~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~a~-a~~g~~l~~~~~~v~i~~~~~~~~~~~~~~~i~ 151 (271)
++ ++|++|++|||++|+++.+++..+.+.|++++|+|||||++++ |++|+||++.+.+.++.+.++|+++..
T Consensus 291 ~~G~~Vv~L~~GDP~i~g~g~~l~~~l~~~gi~v~vvPGiSs~~aa~a~~Giplt~~~~~~~~~~vsg~~~~~~------ 364 (457)
T 1pjq_A 291 QKGKRVVRLKGGDPFIFGRGGEELETLCHAGIPFSVVPGITAASGCSAYSGIPLTHRDYAQSVRLVTGHLKTGG------ 364 (457)
T ss_dssp HTTCEEEEEESBCTTTSSSHHHHHTTTTTTTCCEEEECCCCHHHHHHHHTTCCSCCTTTCSEEEEECC------------
T ss_pred HCCCcEEEEeCCCCCccCCHHHHHHHHHHCCCCEEEeCCHhHHHHHHHHcCCCccCCCccceEEEEeCCCCCcc------
Confidence 77 9999999999999999999877777789999999999999976 999999997766566667788765321
Q ss_pred hhhccCcceeeeecccCCccchHHHhhcccccCCeeecc---HHHHHHHHHHhhhcCCCCCCCCeEEEEeccCCCCeEEE
Q psy11146 152 ENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMS---VSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIV 228 (271)
Q Consensus 152 ~~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~---~~~~~~~L~~~~~~~~~~~~~~~v~v~~~l~~~~E~i~ 228 (271)
..+|+.++....++ ++||+ +.++++.|.+ .|+++++++++++++|+++|+++
T Consensus 365 ------------------~~~~~~l~~~~~t~--Vl~~~~~~~~~i~~~L~~-----~g~~~~~~v~v~~~l~~~~E~i~ 419 (457)
T 1pjq_A 365 ------------------ELDWENLAAEKQTL--VFYMGLNQAATIQEKLIA-----FGMQADMPVALVENGTSVKQRVV 419 (457)
T ss_dssp ------------------CCCHHHHHSSSEEE--EESSCSSSHHHHHHHHHH-----TTCCTTCEEEEEESTTSTTCEEE
T ss_pred ------------------hhhHHHHhcCCCeE--EEEcchhhHHHHHHHHHh-----cCCCCCCEEEEEEECCCCCcEEE
Confidence 01233333332233 44554 4456666766 68988999999999999999999
Q ss_pred EeeccchhhccCCCCceEEEEeccCCcchHHHHHhhhcc
Q psy11146 229 ATSLSNMTETDMGKPLHSLIIVGNIHPVESEFLAQYSTQ 267 (271)
Q Consensus 229 ~~~l~~l~~~~~~~~~~sliivg~~~~~~~~~l~~~~~~ 267 (271)
.++++++.+.....++.+++++|+.+.. ++.++||+++
T Consensus 420 ~~tl~el~~~~~~~~~~~viivg~~~~~-~~~~~~~~~~ 457 (457)
T 1pjq_A 420 HGVLTQLGELAQQVESPALIIVGRVVAL-RDKLNWFSNH 457 (457)
T ss_dssp EEEGGGHHHHTTSCCSSEEEEESGGGGG-GGTTCCSCCC
T ss_pred EEEHHHHHHHhcCCCCCEEEEEChhhcc-ccccccccCC
Confidence 9999999764212345599999987654 4678999875
No 12
>1va0_A Uroporphyrin-III C-methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.97A {Thermus thermophilus} SCOP: c.90.1.1 PDB: 1v9a_A
Probab=100.00 E-value=5.1e-36 Score=257.29 Aligned_cols=212 Identities=22% Similarity=0.253 Sum_probs=153.3
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhcCcceeecc-----hhhHHHHHHHHHHhcCC
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKDIIIAD-----REMVESASDVILHNADV 75 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~~~~v~~~~-----~~~~~~~~~~i~~~~~~ 75 (271)
|||+||+|||||++||+||+++|++||+|+++... + .+.++.+. ++.+..+ ...+++..+.+.+++++
T Consensus 2 ~l~iVG~GpG~~~~LT~~A~~~L~~advI~~~~~~-----~-~~~l~~~~-~~~i~~~~~~~~~~~~~~~~~~i~~~~~~ 74 (239)
T 1va0_A 2 RVYLVGAGPGDPELLTLKAYRLLKEAPVVLYDRLV-----D-ERVLALAP-GEKVYVGKEEGESEKQEEIHRLLLRHARA 74 (239)
T ss_dssp EEEEEECBSSCGGGSBHHHHHHHHHCSEEEECTTS-----C-HHHHTTCC-SEEEECCCCC----CHHHHHHHHHHHHHT
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCEEEEcCCC-----C-HHHHhhcc-ccEEecccccccccCHHHHHHHHHHHHHC
Confidence 68999999999999999999999999999996442 1 44554332 2222111 23456666778888877
Q ss_pred -CCEEEEecCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHHHHHHcCCccccccceeEEeeecCCCCCCchhhHHHhhh
Q psy11146 76 -EDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAAGCCGLQLYNFGETVSIPFWTESWKPDSFYDKIVENK 154 (271)
Q Consensus 76 -~~V~~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~a~a~~g~~l~~~~~~v~i~~~~~~~~~~~~~~~i~~~~ 154 (271)
++|++|++|||++|+++.+++..+.+.+++++++|||||++++ |+||++.+.+-++.+.+.|.++.. ....+..
T Consensus 75 g~~V~~l~~GDP~i~~~~~~l~~~l~~~gi~v~viPGiSs~~aa---g~pl~~~~~~~~~~~~~~~~~~~~--~~~~~~l 149 (239)
T 1va0_A 75 HPFVVRLKGGDPMVFGRGGEEVLFLLRHGVPVEVVPGVTSLLAS---GLPLTHRGLAHGFAAVSGVLEGGG--YPDLRPF 149 (239)
T ss_dssp SSEEEEEESBCTTSSSSHHHHHHHHHHTTCCEEEECCCCGGGTT---CCCSSBTTTBSEEEEEESSCGGGC--CCCCTTT
T ss_pred CCcEEEEeCCCCccccCHHHHHHHHHHCCCcEEEECCcchHhhc---CCCcccCCccceEEEEeccCCccc--hhhHHHh
Confidence 8999999999999999999887777789999999999999977 999986654334445666654221 0011111
Q ss_pred ccCcceeeeecccCCccchHHHhhcccccCCeeecc---HHHHHHHHHHhhhcCCCCCCCCeEEEEeccCCCCeEEEEee
Q psy11146 155 SRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMS---VSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATS 231 (271)
Q Consensus 155 ~~~~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~---~~~~~~~L~~~~~~~~~~~~~~~v~v~~~l~~~~E~i~~~~ 231 (271)
..+ +++ +++++ +.++++.|.+ .|+++++++++++++|+++|+++.++
T Consensus 150 ~~~-~t~------------------------vl~~~~~~~~~i~~~L~~-----~g~~~~~~v~v~~~l~~~~E~i~~~~ 199 (239)
T 1va0_A 150 ARV-PTL------------------------VVLMGVGRRVWIAKELLR-----LGRDPREPTLFVERASTPKERRVHAR 199 (239)
T ss_dssp TTC-SSE------------------------EEESCSTTHHHHHHHHHH-----TTCCTTCEEEEEETTTSTTCEEEEEE
T ss_pred cCC-CcE------------------------EEEccHHHHHHHHHHHHh-----cCCCCCCcEEEEEECCCCCcEEEEeE
Confidence 112 333 33443 4456666666 57888999999999999999999999
Q ss_pred ccchhhc--cCCCCceEEEEeccCCcc
Q psy11146 232 LSNMTET--DMGKPLHSLIIVGNIHPV 256 (271)
Q Consensus 232 l~~l~~~--~~~~~~~sliivg~~~~~ 256 (271)
++++.+. +++.+ +++++|+....
T Consensus 200 l~el~~~~~~~~~~--~vivig~~~~~ 224 (239)
T 1va0_A 200 LEEVAEGKVEVRPP--ALWILGEVVRV 224 (239)
T ss_dssp HHHHHTTCCCCCSS--EEEEESGGGGG
T ss_pred HHHHHhhhcCCCCC--EEEEEchhhcc
Confidence 9999765 34444 88888986553
No 13
>3nut_A Precorrin-3 methylase; vitamin B12 pathway, cobalamin, methyltransferase, transfera; HET: SAH; 2.22A {Rhodobacter capsulatus}
Probab=100.00 E-value=3.4e-36 Score=260.17 Aligned_cols=215 Identities=16% Similarity=0.152 Sum_probs=147.0
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhcCcceeecchhhHHHHHHHHHHhcCC-CCEE
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKDIIIADREMVESASDVILHNADV-EDVA 79 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~i~~~~~~-~~V~ 79 (271)
++|+||+|||||++||+||+++|++||+|++.+. . .+.+....++++......+..+.++.+++.+++ ++||
T Consensus 10 ~~~~vG~GPGd~~lLT~rA~~~L~~AdvI~g~d~--~-----~~~~~~~~~~~~~~~~~~~ei~~~~~li~~~~~G~~Vv 82 (251)
T 3nut_A 10 WVTVAGLGPGREDLVTPEVTAALAEATDIVGYIP--Y-----VARIAPREGLTLHPTDNRVELDRATHALEMAAEGRRVV 82 (251)
T ss_dssp EEEEEECBSSCGGGSCHHHHHHHHHCSEEEECGG--G-----GTTCCCCTTCEEEECCSSCCHHHHHHHHHHHHTTCEEE
T ss_pred cEEEEEECCCCHHHHHHHHHHHHHhCCEEEEcCc--c-----cccccccCCCEEeecCCHHHHHHHHHHHHHHHCCCeEE
Confidence 5899999999999999999999999999997422 2 222221224554332211111223457777777 9999
Q ss_pred EEecCCCCCCCcHHHHHHHHhc----CCCCEEEEcCchHHHHH-HHcCCccc-cccceeEEeeecCCCCCCchhhHHHhh
Q psy11146 80 LLVVGDPYGATTHTDLVLRARQ----SNIPTKVVHNASILNAA-GCCGLQLY-NFGETVSIPFWTESWKPDSFYDKIVEN 153 (271)
Q Consensus 80 ~l~~GDP~~~~~~~~l~~~~~~----~~~~v~iiPGiSs~~a~-a~~g~~l~-~~~~~v~i~~~~~~~~~~~~~~~i~~~ 153 (271)
+|++|||++|+++.++...+.+ .+++++|||||||++++ |++|+||+ ++ .+.+.|.+... ++.+.+
T Consensus 83 ~L~~GDP~i~g~g~~l~~~l~~~~~~~gi~veviPGiSS~~aa~a~~G~plt~~~------~~~s~~~~~~~-~~~~~~- 154 (251)
T 3nut_A 83 VVSSGDPGVFAMASALFEALEAHPEHAGTEIRILPGITAMLAAAAAAGAPLGHDF------CAINLSDNLKP-FEILEK- 154 (251)
T ss_dssp EEESBCTTSSSHHHHHHHHHHHCGGGTTCCEEEECCCCHHHHHHHHHEETTSSSE------EEEESCCTTSC-HHHHHH-
T ss_pred EEeCCCcccccCHHHHHHHHHhhcccCCCcEEEECCHHHHHHHHHHhCCCccCCe------EEEEecCCCCC-hHHHHH-
Confidence 9999999999999998777665 79999999999999976 99999995 43 12333433111 222221
Q ss_pred hccCcceeeeecccCCccchHHHhhcccccCCeeeccH-----HHHHHHHHHhhhcCCCCCCCCeEEEEeccCCCCeEEE
Q psy11146 154 KSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSV-----SQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIV 228 (271)
Q Consensus 154 ~~~~~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~-----~~~~~~L~~~~~~~~~~~~~~~v~v~~~l~~~~E~i~ 228 (271)
.|+.++....++ ++||++ +++.+.+ +++. .++++++++++++++|+++|+++
T Consensus 155 ------------------~l~~l~~~~~tl--vl~~~~~~~~p~~i~~~~-~ll~--~g~~~~~~v~v~~~l~~~~E~i~ 211 (251)
T 3nut_A 155 ------------------RLRHAARGDFAM--AFYNPRSKSRPHQFTRVL-EILR--EECEPGRLILFARAVTTPEQAIS 211 (251)
T ss_dssp ------------------HHHHHHHTTCEE--EEESCSCSSSTTHHHHHH-HHHH--HHSCTTCEEEEEESTTSTTCEEE
T ss_pred ------------------HHHHHhCCCCEE--EEECCccccchhHHHHHH-HHHH--hCCCCCCEEEEEeeCCCCCcEEE
Confidence 122222222233 455543 3444311 2222 37888999999999999999999
Q ss_pred EeeccchhhccCCCCceEEEEeccCCc
Q psy11146 229 ATSLSNMTETDMGKPLHSLIIVGNIHP 255 (271)
Q Consensus 229 ~~~l~~l~~~~~~~~~~sliivg~~~~ 255 (271)
.++++++.+.+++ +++++|||+...
T Consensus 212 ~~tl~~l~~~~~~--~~s~iiVg~~~~ 236 (251)
T 3nut_A 212 VVELRDATPEMAD--MRTVVLVGNAAT 236 (251)
T ss_dssp EEEGGGCCGGGCC--TTEEEEECCSSC
T ss_pred EeEHHHHhhcCCC--CCEEEEECCccc
Confidence 9999999876554 459999998654
No 14
>1wyz_A Putative S-adenosylmethionine-dependent methyltra; northeast structural genomics consortium, BTR28, methyltrans PSI; 2.50A {Bacteroides thetaiotaomicron} SCOP: c.90.1.1
Probab=100.00 E-value=2.8e-36 Score=259.36 Aligned_cols=214 Identities=14% Similarity=0.166 Sum_probs=150.4
Q ss_pred CEEEEecCCCCcc---hhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhc-Ccc-----eeecchhhHHHHHHHHHH
Q psy11146 1 MFYVVGLGLGDVK---DITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFY-GKD-----IIIADREMVESASDVILH 71 (271)
Q Consensus 1 ml~iVG~GPGdp~---llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~-~~~-----v~~~~~~~~~~~~~~i~~ 71 (271)
|||+||+|||||+ +||+||+++|++||+|+++++.. + .++++.+. +++ +....+..+++.++.+++
T Consensus 4 ~ly~VG~GpGd~~~~dLlTlrA~~~L~~aDvI~~~~~~~----~-~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 78 (242)
T 1wyz_A 4 ALYLLPVTLGDTPLEQVLPSYNTEIIRGIRHFIVEDVRS----A-RRFLKKVDREIDIDSLTFYPLNKHTSPEDISGYLK 78 (242)
T ss_dssp SEEEECCCSSSSCHHHHSCTHHHHHHTTCCEEEESCHHH----H-HHHHHHHCSSSCTTCCCCEECCSSCCHHHHHHHHH
T ss_pred eEEEEecCCCCCcccCccCHHHHHHHHhCCEEEEeCCcc----h-HHHHHhcCCCCceeeeeeecccccCHHHHHHHHHH
Confidence 5999999999998 79999999999999999975421 1 45555442 332 222233345666677888
Q ss_pred hcCC-CCEEEEe-cCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHHHH-HHcCCccccccceeEEeeecCCCCCCchhh
Q psy11146 72 NADV-EDVALLV-VGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAA-GCCGLQLYNFGETVSIPFWTESWKPDSFYD 148 (271)
Q Consensus 72 ~~~~-~~V~~l~-~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~a~-a~~g~~l~~~~~~v~i~~~~~~~~~~~~~~ 148 (271)
.+++ ++||+|+ .|||++|+++.+++..+.+.++++++||||||++++ |++|+|+++| .+.+. .|.+..+
T Consensus 79 ~~~~G~~Va~ls~~GdP~i~~~g~~l~~~l~~~gi~vevIPGiSs~~aa~a~~G~p~~~f------~~~g~--~p~~~~~ 150 (242)
T 1wyz_A 79 PLAGGASMGVISEAGCPAVADPGADVVAIAQRQKLKVIPLVGPSSIILSVMASGFNGQSF------AFHGY--LPIEPGE 150 (242)
T ss_dssp HHHTTCCEEEECC-------CHHHHHHHHHHHTTCCEEECCCCCHHHHHHHHHTSCSSSE------EEEEE--CCSSTTH
T ss_pred HHHcCCEEEEEecCCCCcccCcHHHHHHHHHHCCCCEEEeCcHHHHHHHHHHcCCCCCeE------EEEEE--cCCCccc
Confidence 8888 9999997 899999999999887777889999999999999976 9999998765 22221 1211000
Q ss_pred HHHhhhccCcceeeeecccCCccchHHHhhc----ccccCCeeeccHHHHHHHHHHhhhcCCCCCCCCeEEEEeccCCCC
Q psy11146 149 KIVENKSRGLHTLCLLDIQVKEPTLESLTKK----TRQYLPPRFMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGSET 224 (271)
Q Consensus 149 ~i~~~~~~~~~~~~l~~~~~~~~~l~~l~~~----~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~v~v~~~l~~~~ 224 (271)
..+.|+++++. ..++ ++||.++++.+.+.++++ .+++++++++++|+|+++
T Consensus 151 --------------------~~~~l~~l~~~~~~~~~t~--vl~~~~~~~~~~~~~l~~---~~~~~~~v~vv~~~t~~~ 205 (242)
T 1wyz_A 151 --------------------RAKKLKTLEQRVYAESQTQ--LFIETPYRNHKMIEDILQ---NCRPQTKLCIAANITCEG 205 (242)
T ss_dssp --------------------HHHHHHHHHHHHHHHTCEE--EEEECGGGHHHHHHHHHH---HSCSSSEEEEEESTTSSS
T ss_pred --------------------hHHHHHHHhcccccCCCeE--EEEEcHHHHHHHHHHHHh---cCCCCCEEEEEEeCCCCC
Confidence 01235555543 4455 778888777777776654 466789999999999999
Q ss_pred eEEEEeeccchhhc--cC-CCCceEEEEeccCC
Q psy11146 225 QHIVATSLSNMTET--DM-GKPLHSLIIVGNIH 254 (271)
Q Consensus 225 E~i~~~~l~~l~~~--~~-~~~~~sliivg~~~ 254 (271)
|+++.++++++.+. +. ..| +++++|+..
T Consensus 206 E~i~~~tl~~l~~~~~~~~~~P--~i~vig~~~ 236 (242)
T 1wyz_A 206 EFIQTRTVKDWKGHIPELSKIP--CIFLLYKLE 236 (242)
T ss_dssp CEEEEEEHHHHSSCCC---CCC--EEEEEEC--
T ss_pred cEEEEeeHHHHHhhhhccCCCC--EEEEEeccc
Confidence 99999999999764 33 456 999999863
No 15
>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S-adenosylmethi transferase; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A*
Probab=100.00 E-value=2.7e-36 Score=261.97 Aligned_cols=225 Identities=16% Similarity=0.158 Sum_probs=150.6
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhc------Ccceee----cchh------hHHH
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFY------GKDIII----ADRE------MVES 64 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~------~~~v~~----~~~~------~~~~ 64 (271)
+||+||+|||||++||+||+++|++||+|+|+.+..-.... .+++..+. ++++.. ..++ .+++
T Consensus 6 ~l~iVG~GpG~~~~LT~~A~~~L~~advV~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (259)
T 2e0n_A 6 SIISVSLGPGDPGLITVKALSQLREADVIYYPGTVSASGAV-TSVALDILKEFDLDPSKLRGMLVPMSRSRGAAEASYAA 84 (259)
T ss_dssp EEEEEECBSSCGGGSBHHHHHHHHHCSEEEEEEEECTTCCE-ECHHHHHHTTTTCCGGGEEEEEEECC---------CGG
T ss_pred EEEEEEeCCCChHHHHHHHHHHHHhCCEEEEeccccccccH-HHHHHHHHHhcCCCCCEEEeeccCCccchhhhHHHHHH
Confidence 49999999999999999999999999999997542100000 23443321 233321 1111 2455
Q ss_pred HHHHHHHhcCC-CCEEEEecCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHHHH-HHcCCccccccceeEEeeecCCCC
Q psy11146 65 ASDVILHNADV-EDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAA-GCCGLQLYNFGETVSIPFWTESWK 142 (271)
Q Consensus 65 ~~~~i~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~a~-a~~g~~l~~~~~~v~i~~~~~~~~ 142 (271)
..+.+++.+++ ++|++|++|||++|+++.+++..+.+.|++++|+|||||++++ |++|+||+..+..+++ .+++..
T Consensus 85 ~~~~i~~~~~~g~~Va~l~~GDP~~~~~~~~l~~~l~~~gi~v~viPGiSs~~aa~a~~G~pl~~~~~~~~~--~~~~~~ 162 (259)
T 2e0n_A 85 NYASMAEEVQAGRRVAVVSVGDGGFYSTASAIIERARRDGLDCSMTPGIPAFIAAGSAAGMPLALQSDSVLV--LAQIDE 162 (259)
T ss_dssp GHHHHHHHHHTTCEEEEEESBCTTBSCTHHHHHHHHHTTTCCEEEECCCCHHHHHHHHTTCCSBCTTCCEEE--ECSCSS
T ss_pred HHHHHHHHHHCCCeEEEEeCCCCcccccHHHHHHHHHHCCCCEEEeCChhHHHHHHHhcCCCCcCCCceEEE--EcCCCC
Confidence 66778888877 8999999999999999999988887889999999999999976 9999999865555543 333221
Q ss_pred CCchhhHHHhhhccCcceeeeecccCCccchHHHhhcccccCCeeeccHHHHHHHHHHhhhcCCCCCCCCeEEEEeccCC
Q psy11146 143 PDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGS 222 (271)
Q Consensus 143 ~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~v~v~~~l~~ 222 (271)
.+.+..... ...+++++... ..+.++++.|.+ .++ ++++++++|+
T Consensus 163 ----~~~l~~~~~-~~~t~vl~~~~---------------------~~~~~i~~~L~~-----~g~----~v~v~~~l~~ 207 (259)
T 2e0n_A 163 ----IGELERALV-THSTVVVMKLS---------------------TVRDELVSFLER-----YAK----PFLYAEKVGM 207 (259)
T ss_dssp ----THHHHHHHT-TCSEEEECCTT---------------------SSGGGHHHHHHH-----HCS----CEEEEESTTS
T ss_pred ----HHHHHHHhh-cCCEEEEEccc---------------------ccHHHHHHHHHh-----CCC----CEEEEEECCC
Confidence 122222222 12344443221 123456676766 344 2999999999
Q ss_pred CCeEEEEeeccchhhccCCCCceEEEEeccCCcchHHHHHhhhccCCCC
Q psy11146 223 ETQHIVATSLSNMTETDMGKPLHSLIIVGNIHPVESEFLAQYSTQELTG 271 (271)
Q Consensus 223 ~~E~i~~~~l~~l~~~~~~~~~~sliivg~~~~~~~~~l~~~~~~~~~~ 271 (271)
++|+++. +++++.+.++ ++++++++|+... ..|++.+|+||
T Consensus 208 ~~E~i~~-~l~el~~~~~--~~~s~iii~~~~~-----~~~~~~~p~~~ 248 (259)
T 2e0n_A 208 AGEFITM-EVDALRSRAI--PYFSLLVCSPHCR-----QSTLSPFASKL 248 (259)
T ss_dssp TTCEEEC-CTHHHHSCCC--CSSEEEEECGGGG-----GSSCC------
T ss_pred CCeEEEc-cHHHHhhCCC--CCcEEEEEeccCC-----ccccCccchhH
Confidence 9999999 9999976544 5669999986532 33999999997
No 16
>3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG, STRU genomics, PSI-2, protein structure initiative; 2.29A {Lactobacillus brevis atcc 367}
Probab=100.00 E-value=4.8e-35 Score=257.79 Aligned_cols=212 Identities=15% Similarity=0.196 Sum_probs=156.9
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhc-CcceeecchhhHHHHHHHHHHhcCC-CCE
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFY-GKDIIIADREMVESASDVILHNADV-EDV 78 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~i~~~~~~-~~V 78 (271)
+||+||+||||+++||+||+++|++||+|+++++. . . .++++.+. +++++....++.++.++.+++.+++ ++|
T Consensus 17 ~LylVG~GpG~~~~lT~rA~~~L~~aDvI~~edtr-~---~-~~lL~~~~~~~~~i~~~~~~~~~~~~~li~~l~~G~~V 91 (296)
T 3kwp_A 17 HLYLVPTPIGNLDDMTFRAVKTLTAVDLIAAEDTR-N---T-QKLLNHFEITTKQISFHEHNTQERIPQLIAKLKQGMQI 91 (296)
T ss_dssp EEEECCBCSSCGGGCCHHHHHHHHHSSEEEESCHH-H---H-HHHHHHTTCCCEEEECSTTTHHHHHHHHHHHHHTTCEE
T ss_pred eEEEeccCCCCccchhhHHHHHHhHhhhhhhhccc-c---H-HHHhhheeeeeeeeehhhcchhhHhHHHHHHHhcCceE
Confidence 48999999999999999999999999999996431 1 1 44555442 4454433334556677788888877 899
Q ss_pred EEEe-cCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHHHH-HHcCCccccccceeEEeeecCCCCCCchhhHHHhhhcc
Q psy11146 79 ALLV-VGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAA-GCCGLQLYNFGETVSIPFWTESWKPDSFYDKIVENKSR 156 (271)
Q Consensus 79 ~~l~-~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~a~-a~~g~~l~~~~~~v~i~~~~~~~~~~~~~~~i~~~~~~ 156 (271)
++|+ +|||++|+++.+++..+.+.|++++++|||||++++ |++|+||++| .|.+.| |....+
T Consensus 92 a~lsdaGdP~i~~~g~~lv~~~~~~gi~v~viPGiSA~~aA~a~~Glp~~~f------~f~g~~--p~~~~~-------- 155 (296)
T 3kwp_A 92 AQVSDAGMPSISDPGHELVNACIDAHIPVVPLPGANAGLTALIASGLAPQPF------YFYGFL--DRKPKD-------- 155 (296)
T ss_dssp EEECSSBCTTSSHHHHHHHHHHHHTTCCEEECCCCCHHHHHHHHHSSCCSSE------EEEEEC--CSSHHH--------
T ss_pred EEeccCCCCCCCCCchHHHHHHHHcCCCeeeCCCcccchHHHHhccCCCCce------eEEeec--cCCcHH--------
Confidence 9998 999999999999988888889999999999999965 9999999876 232212 221100
Q ss_pred CcceeeeecccCCccchHHHhhcccccCCeeeccHHHHHHHHHHhhhcCCCCCCCCeEEEEeccCCCCeEEEEeeccchh
Q psy11146 157 GLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATSLSNMT 236 (271)
Q Consensus 157 ~~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~v~v~~~l~~~~E~i~~~~l~~l~ 236 (271)
....|+.++....++ ++||+++++.+.+.++.+ .+++++++++++++|+++|++++++++++.
T Consensus 156 ------------r~~~l~~l~~~~~tl--V~y~~~~rl~~~l~~L~~---~~g~~~~v~v~~~lt~~~E~i~~gtl~el~ 218 (296)
T 3kwp_A 156 ------------RKAEIAGLAQRPETL--IFYEAPHRLKKTLQNLAA---GFGDERPAVLCRELTKRYEEFLRGSLAELA 218 (296)
T ss_dssp ------------HHHHHHTTTTCCSEE--EEEECGGGHHHHHHHHHH---HHCTTCEEEEEESTTSTTCEEEEEEHHHHH
T ss_pred ------------HHHHHHHhhcCCcee--EeeeCcHHHHHHHHHHHH---HhCCcchhHHHHHHHHHHHHHHhccHHHHH
Confidence 011344444443444 778888877666655554 366679999999999999999999999997
Q ss_pred hc----cCCCCceEEEEecc
Q psy11146 237 ET----DMGKPLHSLIIVGN 252 (271)
Q Consensus 237 ~~----~~~~~~~sliivg~ 252 (271)
+. ....+ .++||+.
T Consensus 219 ~~~~~~~~~ge--~vlvv~~ 236 (296)
T 3kwp_A 219 NWAATDTVRGE--FVVLVGG 236 (296)
T ss_dssp HHHHHSCCCSC--EEEEECC
T ss_pred hhhccccccee--EEEEEcC
Confidence 64 23455 6777764
No 17
>2zvb_A Precorrin-3 C17-methyltransferase; plasmid, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SAH; 2.00A {Thermus thermophilus} PDB: 2zvc_A*
Probab=100.00 E-value=4e-34 Score=252.02 Aligned_cols=217 Identities=18% Similarity=0.203 Sum_probs=148.7
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhh--c-CcceeecchhhHHHHHHHHHHhcCC-C
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSF--Y-GKDIIIADREMVESASDVILHNADV-E 76 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~--~-~~~v~~~~~~~~~~~~~~i~~~~~~-~ 76 (271)
|||+||+|||||++||+||+++|++||+|++.+. . .+.+..+ . ++++.........+.++.+++.+++ +
T Consensus 3 ~l~lVG~GpGdp~lLT~rA~~~L~~ADvVig~~~--~-----l~ll~~~~~~~~k~~~~~~~~~e~~~~~~~l~~a~~G~ 75 (295)
T 2zvb_A 3 ELFLVGMGPGDLPGLTQRAREALEGAEVVIGYST--Y-----VKLLEEMGLLAGKEVVRKGMTEELDRAEEALERALSGQ 75 (295)
T ss_dssp EEEEEECBTSSGGGSCHHHHHHHHHCSEEECCHH--H-----HHHHHHHTCCTTSEEECTTCCSHHHHHHHHHHHHHTTC
T ss_pred EEEEEECCCCChHHHHHHHHHHHHcCCEEEEeCc--H-----HHHHHHhhccCCCEEEecCCchHHHHHHHHHHHHHCCC
Confidence 5999999999999999999999999999996421 1 4555554 3 5665432222223445667777766 8
Q ss_pred CEEEEecCCCCCCCcHHHHHHHHhcC--------------------CCCEEEEcCchHHHHH-HHcCCccc-cccceeEE
Q psy11146 77 DVALLVVGDPYGATTHTDLVLRARQS--------------------NIPTKVVHNASILNAA-GCCGLQLY-NFGETVSI 134 (271)
Q Consensus 77 ~V~~l~~GDP~~~~~~~~l~~~~~~~--------------------~~~v~iiPGiSs~~a~-a~~g~~l~-~~~~~v~i 134 (271)
+|++|++|||++|+++.++...+... +++++|||||||++++ |++|+||+ ++
T Consensus 76 ~Va~L~~GDP~~yg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~veVIPGiSS~~aaaA~lG~plt~~~------ 149 (295)
T 2zvb_A 76 RVALVSGGDPGIYGMAAPVLELMEERGLKRVDGGVGLPGRFAGEEGEVFLAVIPGVTAANAVASLLGSPLAHDT------ 149 (295)
T ss_dssp EEEEEESBCTTSSSSHHHHHHHHHHTTCEECSCCCSSSEEEEETTEEEEEEEECCCCHHHHHHHTTEETTSSCE------
T ss_pred cEEEEeCCCCChhhhHHHHHHHHHHhcccccccccccccccccccCCCcEEEECCHhHHHHHHHHhCCCccCCC------
Confidence 99999999999999998876554443 4899999999999976 99999995 44
Q ss_pred eeecCCCCCCchhhHHHhhh---ccCcceeeeecccCCccchHHHhhcccccCCeeeccHHHHHHHHHHhhhcCCCCCCC
Q psy11146 135 PFWTESWKPDSFYDKIVENK---SRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTKPGLSTA 211 (271)
Q Consensus 135 ~~~~~~~~~~~~~~~i~~~~---~~~~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~ 211 (271)
.+.+.|.+.. +++.+.+.+ ..+..++++++.... ...+...++++.|.+ .++++
T Consensus 150 ~~is~~~~~~-~~~~l~~~l~~~~~~~~t~vl~~~~~~----------------~r~~~~~~i~~~L~~------~~~~~ 206 (295)
T 2zvb_A 150 CLISLSDLLT-PWPLIERRLHAAGQGDFVVVLYNPQSK----------------RRDWQLRKSAEILLE------YRPKE 206 (295)
T ss_dssp EEEECCCTTS-CHHHHHHHHHHHHHTTCEEEEESCCCS----------------SCTTHHHHHHHHHTT------TSCTT
T ss_pred eEEeCCCCCC-CHHHHHHHHHHhhcCCcEEEEEcCCcc----------------cchhhHHHHHHHHHh------cCCCC
Confidence 3445565311 123332221 112334444332100 001123445555554 45678
Q ss_pred CeEEEEeccCCCCeEEEEeeccchhhccCCCCceEEEEeccCCc
Q psy11146 212 DLAVGIARVGSETQHIVATSLSNMTETDMGKPLHSLIIVGNIHP 255 (271)
Q Consensus 212 ~~v~v~~~l~~~~E~i~~~~l~~l~~~~~~~~~~sliivg~~~~ 255 (271)
+++++++++|+++|+++.++++++.+.++ .+++++|+|+...
T Consensus 207 ~~v~vv~~l~~~~E~i~~~tL~el~~~~~--~~~svviig~~~~ 248 (295)
T 2zvb_A 207 TPAALVKSAYRKRQEVALTTLEGLREAEA--GMLTTVVIGNRQS 248 (295)
T ss_dssp CEEEEEESTTSTTCEEEEEETGGGGGCCC--CTTEEEEECCTTC
T ss_pred CEEEEEecCCCCCcEEEEeeHHHHHhccC--CCCEEEEECCccc
Confidence 99999999999999999999999987554 4559999987543
No 18
>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=1.2e-32 Score=235.24 Aligned_cols=208 Identities=16% Similarity=0.214 Sum_probs=139.7
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccc-cCchhHhhhhc-----Ccceee------cch----hhHHH
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILI-DDIIDDMKSFY-----GKDIII------ADR----EMVES 64 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~-~~~~~~l~~~~-----~~~v~~------~~~----~~~~~ 64 (271)
|||+||+|||||++||+||+++|++||+|+++....-.. .. .++++.+. ++++.. .++ ..+++
T Consensus 4 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~~~~l~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (232)
T 2qbu_A 4 KLIGVGVGPGDSELLTLRAVNVLRSVPVICAPRSSSERESIA-LSIVEDILTERRDGCRILDPVFPMTDDRDELESHWDS 82 (232)
T ss_dssp CEEEEECBSSCGGGSBHHHHHHHHHCSEEECCBCTTCSSCHH-HHHHHHHHHHCSSCCEEECCBCCSCSSSTTHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHhCCEEEEeCCCCCccchH-HHHHHHHhccccCCcEEEEecCCCCccHHHHHHHHHH
Confidence 699999999999999999999999999999975521000 01 34444332 333321 111 14566
Q ss_pred HHHHHHHhcCC-CCEEEEecCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHHHH-HHcCCccccccceeEEeeecCCCC
Q psy11146 65 ASDVILHNADV-EDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAA-GCCGLQLYNFGETVSIPFWTESWK 142 (271)
Q Consensus 65 ~~~~i~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~a~-a~~g~~l~~~~~~v~i~~~~~~~~ 142 (271)
..+.+.+.+++ ++|++|++|||++|+++.+++..+.+.|++++++|||||++++ |++|+|++..+..+.+ . |++
T Consensus 83 ~~~~i~~~~~~g~~V~~l~~GDP~i~~~~~~l~~~~~~~gi~v~viPGiSs~~aa~a~~g~pl~~~~~~~~~--~--~~~ 158 (232)
T 2qbu_A 83 AARMVAAELEDGRDVAFITLGDPSIYSTFSYLQQRIEDMGFKTEMVPGVTSFTACAATAGRTLVEGDEILLV--V--PRV 158 (232)
T ss_dssp HHHHHHHHHHTTCCEEEEESBCTTBSCSHHHHHHHHHHTTCCEEEECCCCHHHHHHHHTTCCCBCTTCCEEE--E--SSC
T ss_pred HHHHHHHHHHCCCeEEEEeCCCCccchhHHHHHHHHHHCCCcEEEeCCccHHHHHHHHhCCCCCCCCceEEE--E--eCC
Confidence 66778888877 8999999999999999999988877889999999999999976 9999998754444332 2 222
Q ss_pred CCchhhHHHhhhccCcceeeeecccCCccchHHHhhcccccCCeeeccHHHHHHHHHHhhhcCCCCCCCCeEEEEeccCC
Q psy11146 143 PDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGS 222 (271)
Q Consensus 143 ~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~v~v~~~l~~ 222 (271)
.. .|+.+++...++ ++++.+++ ...+.+.+.+ .+. ++++++++++|+
T Consensus 159 ~~---------------------------~l~~~~~~~~t~--vl~~~~~~-~~~i~~~L~~-~g~--~~~v~v~~~l~~ 205 (232)
T 2qbu_A 159 DD---------------------------RFERVLRDVDAC--VIMKTSRH-GRRAMEVVES-DPR--GKDVVSVANCSM 205 (232)
T ss_dssp CH---------------------------HHHHHGGGCSEE--EESSHHHH-HHHHHHHHHH-SSS--CCEEEEEESTTS
T ss_pred HH---------------------------HHHHHhhcCCeE--EEEcccCc-HHHHHHHHHh-cCC--CCcEEEEEECCC
Confidence 11 222322222222 33333333 2223332322 344 469999999999
Q ss_pred CCeEEEEeeccchhhccCCCCceEEEEeccC
Q psy11146 223 ETQHIVATSLSNMTETDMGKPLHSLIIVGNI 253 (271)
Q Consensus 223 ~~E~i~~~~l~~l~~~~~~~~~~sliivg~~ 253 (271)
++|+++.+ ++ .+ .+|++++++++.
T Consensus 206 ~~E~i~~~-l~----~~--~~~ls~vii~~~ 229 (232)
T 2qbu_A 206 DDEVVERG-FA----SG--GGYLATTLVRFR 229 (232)
T ss_dssp TTCEEEES-CC----SC--CCSSEEEEEEC-
T ss_pred CCcEEEcC-CC----cC--CCccEEEEEecC
Confidence 99999984 54 23 457798888753
No 19
>2bb3_A Cobalamin biosynthesis precorrin-6Y methylase (CB; beta, alpha-beta-alpha sandwich, structural genomics, PSI, P structure initiative; HET: SAH; 2.27A {Archaeoglobus fulgidus} SCOP: c.90.1.1
Probab=99.97 E-value=6e-32 Score=229.26 Aligned_cols=190 Identities=16% Similarity=0.163 Sum_probs=129.5
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhhc-CcceeecchhhHHHHHHHHHHhcCC-CCE
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFY-GKDIIIADREMVESASDVILHNADV-EDV 78 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~i~~~~~~-~~V 78 (271)
|||+||+||| |++||+||+++|++||+|+++ ++. .+.+..+. ++..... ..+++.++++.+ +.+ ++|
T Consensus 23 ~l~lVG~GpG-p~lLTlrA~~~L~~AdvI~~~--~~~-----l~~~~~~~~~~~~~~~--~~~~~~~~~i~~-~~~g~~V 91 (221)
T 2bb3_A 23 MIWIVGSGTC-RGQTTERAKEIIERAEVIYGS--RRA-----LELAGVVDDSRARILR--SFKGDEIRRIME-EGREREV 91 (221)
T ss_dssp EEEEEECBSS-TTCCCHHHHHHHHHCSEEEEC--HHH-----HHHTTCTTCTTEEECS--CCSHHHHHHHHH-HHHHSCE
T ss_pred EEEEEEeCCC-hhHhHHHHHHHHHhCCEEEEC--HHH-----HHHhhhhcCCceEecc--chHHHHHHHHHH-hcCCCcE
Confidence 6999999999 999999999999999999994 221 44554433 2222211 235566666653 445 899
Q ss_pred EEEecCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHHHH-HHcCCccccccceeEEeeecCCCCCCc-hhhHHHhhhcc
Q psy11146 79 ALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAA-GCCGLQLYNFGETVSIPFWTESWKPDS-FYDKIVENKSR 156 (271)
Q Consensus 79 ~~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~a~-a~~g~~l~~~~~~v~i~~~~~~~~~~~-~~~~i~~~~~~ 156 (271)
++|++|||++|+.+..+ .+. ..+++++|||||||++++ |++|+||+++ .+.+.|+++.. .++.+..
T Consensus 92 v~L~~GDP~i~~~~~~l-~~~-~~~i~veviPGiSS~~aa~a~~g~pl~~~------~~vs~~~r~~~~~l~~l~~---- 159 (221)
T 2bb3_A 92 AVISTGDPMVAGLGRVL-REI-AEDVEIKIEPAISSVQVALARLKVDLSEV------AVVDCHAKDFDAELTELLK---- 159 (221)
T ss_dssp EEEESBCTTTTTSHHHH-HTS-CCSSEEEEECCCCHHHHHHHHHTCCGGGE------EEEEC----CCHHHHTHHH----
T ss_pred EEEeCCCCccccCHHHH-HHh-cCCCCEEEECCHHHHHHHHHHhCCCceeE------EEEeecCCCchHHHHHHhc----
Confidence 99999999999876543 333 468999999999999976 9999999974 35566765432 1222221
Q ss_pred CcceeeeecccCCccchHHHhhcccccCCeeeccHHHHHHHHHHhhhcCCCCCCCCeEEEEeccCCCCeEEEEeeccchh
Q psy11146 157 GLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATSLSNMT 236 (271)
Q Consensus 157 ~~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~v~v~~~l~~~~E~i~~~~l~~l~ 236 (271)
...++++++. ..... ++. . +++++++++|+++|+++.++++++
T Consensus 160 ~~~~vvl~~~-------------------------~~~~~---~l~---~-----~~v~v~~~lg~~~E~i~~~~l~el- 202 (221)
T 2bb3_A 160 YRHLLILADS-------------------------HFPLE---RLG---K-----RRVVLLENLCMEGERIREGNADSI- 202 (221)
T ss_dssp HCEEEEEECT-------------------------TCCCG---GGT---T-----CEEEEEESTTSTTCEEEEEETTTC-
T ss_pred CCeEEEEECC-------------------------CCCHH---HHh---C-----CeeehhhhcCCCCcEEEEccHHHH-
Confidence 1233333322 11001 110 1 699999999999999999999998
Q ss_pred hccCCCCceEEEEecc
Q psy11146 237 ETDMGKPLHSLIIVGN 252 (271)
Q Consensus 237 ~~~~~~~~~sliivg~ 252 (271)
+ ++ .+|++++|+++
T Consensus 203 ~-~~-~~~~slii~~~ 216 (221)
T 2bb3_A 203 E-LE-SDYTIIFVERE 216 (221)
T ss_dssp C-CC-CSSEEEEECCC
T ss_pred h-hc-CCCEEEEEEcC
Confidence 3 33 68999999875
No 20
>2npn_A Putative cobalamin synthesis related protein; COBF, PSI-2, MAD, struc genomics, SAM, S-adenosylmethionine, MCSG; HET: MSE SAM; 1.60A {Corynebacterium diphtheriae}
Probab=99.97 E-value=1.4e-31 Score=231.33 Aligned_cols=193 Identities=17% Similarity=0.193 Sum_probs=128.3
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcc----cccccCchhHhhhhc-Ccceeecc---h-------------
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYT----SILIDDIIDDMKSFY-GKDIIIAD---R------------- 59 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~----s~~~~~~~~~l~~~~-~~~v~~~~---~------------- 59 (271)
|||+||+|||||++||+||+++|++||+|++++.. ++.... .++++.+. +++++..+ +
T Consensus 4 ~l~vVG~GpGd~~lLTl~A~~~L~~Advv~~~~~~~~~~~l~~~~-~~il~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 82 (251)
T 2npn_A 4 TIYVIGIGTGSPEFLTLQAISGLRHAQAIVALDKGEQKSDLLALR-QKIVDTHAPGTPIYAVTDPERDRNPDNYEEEVRR 82 (251)
T ss_dssp EEEEEECBSSCGGGCCHHHHHHHHHCSEEEEEC---CCHHHHHHH-HHHHHHHSTTCCEEEECC----------CHHHHH
T ss_pred EEEEEEeCCCChhHhhHHHHHHHHhCCEEEEeCCCCCchhhhhhH-HHHHHHHhCCCEEEEecCCCcccchhhhhhhhhh
Confidence 49999999999999999999999999999996431 110000 12344443 34433211 0
Q ss_pred --hhHHHHHH-HHHHhcCC-CCEEEEecCCCCCCCcHHHHHHHHhcCC---CCEEEEcCchHHHHH-HHcCCccccccce
Q psy11146 60 --EMVESASD-VILHNADV-EDVALLVVGDPYGATTHTDLVLRARQSN---IPTKVVHNASILNAA-GCCGLQLYNFGET 131 (271)
Q Consensus 60 --~~~~~~~~-~i~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~~~~~~---~~v~iiPGiSs~~a~-a~~g~~l~~~~~~ 131 (271)
...++.++ .+.+++++ ++|++|++|||++|+++.+++..+.+.+ ++++|||||||++++ |++|+||++++.+
T Consensus 83 ~~~~~~~~~~~~i~~~~~~g~~Vv~l~~GDP~iy~~~~~l~~~l~~~g~~~i~veviPGiSs~~aa~a~~g~pl~~~~~~ 162 (251)
T 2npn_A 83 WHAERAHLLASTIRERTPDDGAVAFLVWGDPSLYDSTLRIIEHMRNLEDLHADVKVIPGITAVQVLTAEHGILINRIGEA 162 (251)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCEEEEEESBCTTSSCCHHHHHHHHHHHHTCCEEEEEECCCCHHHHHHHHHTCCSSCTTCC
T ss_pred hhhhHHHHHHHHHHHHHHCCCeEEEEeCCCcccccCHHHHHHHHHhcCCCCCcEEEeCChhHHHHHHHHcCCCcCCCCCe
Confidence 12233343 46677777 8999999999999999999877665555 899999999999976 9999999986555
Q ss_pred eEEeeecCCCCCCchhhHHHhhhccCcceeeeecccCCccchHHHhhcccccCCeeeccHHHHHHHHHHhhhcCCCCCCC
Q psy11146 132 VSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTKPGLSTA 211 (271)
Q Consensus 132 v~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~ 211 (271)
+.+. . ++.. ..+.....+++ ++++.+.+..+.|. +++
T Consensus 163 ~~~~--~--g~~l------~~~l~~~~~t~------------------------vvl~~~~~~~~~l~---------~~~ 199 (251)
T 2npn_A 163 IHIT--T--GRNL------PETSAKDRRNC------------------------VVMLDGKTAWQDVA---------TEH 199 (251)
T ss_dssp CEEE--E--TTTG------GGSCTTGGGEE------------------------EEESCSSCTHHHHC---------CTT
T ss_pred EEEE--c--cchh------hHHHHhcCCcE------------------------EEEEcchhhHHHhc---------CCC
Confidence 5432 2 2211 00110011222 22222322222221 247
Q ss_pred CeEEEEeccCCCCeEEEEeeccchhh
Q psy11146 212 DLAVGIARVGSETQHIVATSLSNMTE 237 (271)
Q Consensus 212 ~~v~v~~~l~~~~E~i~~~~l~~l~~ 237 (271)
+++++++++|+++|+++.++++++.+
T Consensus 200 ~~v~v~~~l~~~~E~i~~~~l~el~~ 225 (251)
T 2npn_A 200 TYMWWGAFLGTEQQVLRKGYVHEIGA 225 (251)
T ss_dssp EEEEEEESTTSTTCEEEEEEHHHHHH
T ss_pred CEEEEEEECCCCCeEEEEcCHHHHHH
Confidence 89999999999999999999999854
No 21
>3nd1_A Precorrin-6A synthase/COBF protein; methyltransferase, deacetylase, transferase; HET: SAH; 1.50A {Rhodobacter capsulatus}
Probab=99.97 E-value=1.9e-30 Score=226.01 Aligned_cols=193 Identities=16% Similarity=0.131 Sum_probs=129.6
Q ss_pred EEEEecCCCCcchhhHHHHHHHhhCCEEEEcCccc----ccccCchhHhhhhc-C--cceeecc---h------------
Q psy11146 2 FYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTS----ILIDDIIDDMKSFY-G--KDIIIAD---R------------ 59 (271)
Q Consensus 2 l~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s----~~~~~~~~~l~~~~-~--~~v~~~~---~------------ 59 (271)
||+||+|||||++||+||+++|++||+|+++++.. +..+. .++++.+. . ++++... +
T Consensus 24 ly~VG~GPGdpellTlrA~~~L~~aDvI~~~~t~~~~~~l~~~a-~~il~~~~~~~~~~~i~~~~pm~~~~~~~Y~~~~~ 102 (275)
T 3nd1_A 24 LSLIGIGTGNPRHITGQAVDAMNAADLILIPLKGADKSDLAGLR-RQICAAHLTNPATKVIDFALPVRDASNPSYRKGVD 102 (275)
T ss_dssp EEEEECBSSCGGGCBHHHHHHHHHCSEEEEECCCSCGGGCHHHH-HHHHHHHCCCTTCEEEEECCCCC---------CHH
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHhCCEEEecCCcccchhhhhhH-HHHHHHhhcccCcEEEEecCCccccccchhhhhhh
Confidence 89999999999999999999999999999986521 10011 35565553 2 3433211 0
Q ss_pred --h-hHHHHHH-HHHHhcCC--CCEEEEecCCCCCCCcHHHHHHHHhc-CCCCEEEEcCchHHHHH-HHcCCccccccce
Q psy11146 60 --E-MVESASD-VILHNADV--EDVALLVVGDPYGATTHTDLVLRARQ-SNIPTKVVHNASILNAA-GCCGLQLYNFGET 131 (271)
Q Consensus 60 --~-~~~~~~~-~i~~~~~~--~~V~~l~~GDP~~~~~~~~l~~~~~~-~~~~v~iiPGiSs~~a~-a~~g~~l~~~~~~ 131 (271)
+ ..++.++ .+++++++ ++||+|++|||++|+++.++...+.+ .|++++|||||||++++ |++|+||+++++.
T Consensus 103 ~~~~~~~~~~~~~i~~~l~~~G~~Va~l~~GDP~i~~~~~~l~~~l~~~~gi~veviPGiSs~~aa~a~~g~pl~~~~~~ 182 (275)
T 3nd1_A 103 DWHDAIAETWLSEITAHVPGLEGRVALLVWGDPSLYDSTLRIAERLKSRLPLTTKVIPGITAIQALCAAHAIPLNDIGAP 182 (275)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSCEEEEEEESBCTTSSCSHHHHHHTTTTTSSEEEEEECCCCHHHHHHHHHTCCSSCTTCC
T ss_pred hhhHhHHHHHHHHHHHHHHhCCCeEEEEeCCCCcccchHHHHHHHHHHhcCCCEEEecCccHHHHHHHHcCCCCccCCcE
Confidence 1 1122333 36677765 78999999999999999998777665 78999999999999976 9999999987544
Q ss_pred eEEeeecCCCCCCchhhHHHhhhccCcceeeeecccCCccchHHHhhcccccCCeeeccHHHHHHHHHHhhhcCCCCCCC
Q psy11146 132 VSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTKPGLSTA 211 (271)
Q Consensus 132 v~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~ 211 (271)
+.+ .+++ .. +.+ ........++ +++++.++. .+ ..+++
T Consensus 183 ~~~--l~g~--~~---~~~-~~~~~~~~~v------------------------vl~~~~~~l----~~------i~~~~ 220 (275)
T 3nd1_A 183 VVI--TTGR--QL---RDH-GWPAGTETVV------------------------AMLDGECSF----QS------LPPDG 220 (275)
T ss_dssp EEE--EEHH--HH---HHH-CSCTTCSEEE------------------------EESCSSCGG----GG------SCCTT
T ss_pred EEE--EcCC--Cc---chH-HHHhCCCCEE------------------------EEECCcccH----HH------HhCCC
Confidence 432 2211 10 000 0000111111 233433332 11 12247
Q ss_pred CeEEEEeccCCCCeEEEEeeccchhh
Q psy11146 212 DLAVGIARVGSETQHIVATSLSNMTE 237 (271)
Q Consensus 212 ~~v~v~~~l~~~~E~i~~~~l~~l~~ 237 (271)
+++++++++|+++|++++++++++.+
T Consensus 221 ~~v~v~~~l~~~~E~i~~gtL~el~~ 246 (275)
T 3nd1_A 221 LTIFWGACVAMPEEVLIRGPVAEVTD 246 (275)
T ss_dssp EEEEEEESTTSTTCEEEEEEHHHHHH
T ss_pred CEEEehhccCCCCcEEEEEEHHHHHH
Confidence 89999999999999999999999875
No 22
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=99.90 E-value=1.3e-23 Score=160.54 Aligned_cols=107 Identities=22% Similarity=0.313 Sum_probs=85.6
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCchhHhhhh-c-CcceeecchhhHHHHHHHHHHhcCC-CC
Q psy11146 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSF-Y-GKDIIIADREMVESASDVILHNADV-ED 77 (271)
Q Consensus 1 ml~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~-~-~~~v~~~~~~~~~~~~~~i~~~~~~-~~ 77 (271)
|||+||+|||||++||+||+++|++||+|++++... + .+.++.+ . +++++..+...+++.++.+++.+++ ++
T Consensus 7 ~ly~VG~GpGd~~~lT~~a~~~L~~advv~~~~~~~----~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~G~~ 81 (117)
T 3hh1_A 7 TLYVVATPLGNLDDMTFRAVNTLRNAGAIACEDTRR----T-SILLKHFGIEGKRLVSYHSFNEERAVRQVIELLEEGSD 81 (117)
T ss_dssp CEEEEEECSSCGGGSCHHHHHHHHHCSEEEESCHHH----H-HHHHHHTTCCSCCEEECCSTTHHHHHHHHHHHHHTTCC
T ss_pred eEEEEeCCCCCHHHhhHHHHHHHHhCCEEEEecCch----H-HHHHHHhCCCCCEEeccCCccHHHHHHHHHHHHHCCCe
Confidence 699999999999999999999999999999964311 1 3455554 2 3666544444566677788888877 99
Q ss_pred EEEEe-cCCCCCCCcHHHHHHHHhcCCCCEEEEcCc
Q psy11146 78 VALLV-VGDPYGATTHTDLVLRARQSNIPTKVVHNA 112 (271)
Q Consensus 78 V~~l~-~GDP~~~~~~~~l~~~~~~~~~~v~iiPGi 112 (271)
|++++ +|||++|+++.+++.++++.+++++++||+
T Consensus 82 V~~l~d~GdP~i~~~~~~l~~~~~~~gi~v~viPGp 117 (117)
T 3hh1_A 82 VALVTDAGTPAISDPGYTMASAAHAAGLPVVPVPGA 117 (117)
T ss_dssp EEEEEETTSCGGGSTTHHHHHHHHHTTCCEEEEC--
T ss_pred EEEEecCCcCeEeccHHHHHHHHHHCCCcEEEeCCC
Confidence 99999 899999999999988877899999999995
No 23
>3ffy_A Putative tetrapyrrole (corrin/porphyrin) methylas; structural genomics, APC62130.1, methyltransferase, PSI-2, P structure initiative; 2.00A {Bacteroides fragilis} PDB: 3fq6_A
Probab=99.30 E-value=5.1e-12 Score=95.64 Aligned_cols=106 Identities=19% Similarity=0.208 Sum_probs=76.9
Q ss_pred cCchHHHHH-HHcCCccccccceeEEeeecCCCCCCchhhHHHhhhccCcceeeeecccCCccchHHHhhcccccCCeee
Q psy11146 110 HNASILNAA-GCCGLQLYNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRF 188 (271)
Q Consensus 110 PGiSs~~a~-a~~g~~l~~~~~~v~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~~~~~~~ 188 (271)
||+||+.++ +.+|+|.+.| .|. ++.|... .+...|+++++...++ ++|
T Consensus 1 PG~sA~~~Al~~sGlp~~~F------~F~--Gflp~~~---------------------~r~~~l~~la~~~~Tl--Vfy 49 (115)
T 3ffy_A 1 SNATAFVPALVASGLPNEKF------CFE--GFLPQKK---------------------GRMTKLKSLVDEHRTM--VFY 49 (115)
T ss_dssp -CTTTHHHHHHHTTSCCSSE------EEE--ESCCSST---------------------THHHHHHHTTTCCSEE--EEE
T ss_pred CchhHHHHHHHHcCCCCCcE------EEE--eeCCCCc---------------------cHHHHHHHHhCCCCeE--EEE
Confidence 899998855 9999997755 232 3333320 0113466777665666 899
Q ss_pred ccHHHHHHHHHHhhhcCCCCCCCCeEEEEeccCCCCeEEEEeeccchhhc----cCCCCceEEEEec
Q psy11146 189 MSVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATSLSNMTET----DMGKPLHSLIIVG 251 (271)
Q Consensus 189 ~~~~~~~~~L~~~~~~~~~~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~----~~~~~~~sliivg 251 (271)
|+++++.+.|.++++ .+++++++++++++|+++|++++++++++.+. ..... .++||+
T Consensus 50 esp~Rl~~~l~~L~~---~~g~~~~v~v~relTk~~E~~~rgtl~el~~~~~~~~~kGe--~vivv~ 111 (115)
T 3ffy_A 50 ESPHRLLKTLTQFAE---YFGPERQVSVSREISKIHEETVRGTLSELIEHFTATDPRGE--IVIVLA 111 (115)
T ss_dssp ECTTTHHHHHHHHHH---HHCTTCEEEEEEESSSSCEEEEEEEHHHHHHHHHHSCCCSS--EEEEEC
T ss_pred echHHHHHHHHHHHH---hcCCCCEEEeeeccCCCceEEEEeeHHHHHHHHHhcCCCCC--EEEEEe
Confidence 999998888888775 57779999999999999999999999998753 33445 556654
No 24
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=38.51 E-value=1.2e+02 Score=22.71 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHhcCCCCEEEEe-cCC
Q psy11146 61 MVESASDVILHNADVEDVALLV-VGD 85 (271)
Q Consensus 61 ~~~~~~~~i~~~~~~~~V~~l~-~GD 85 (271)
+.++.++.+.+.++.+++++++ +||
T Consensus 124 d~~eai~~~~~~~~~gDvVLv~Gsg~ 149 (163)
T 3mvn_A 124 DVDELVMRIVQQAKPNDHILIMSNGA 149 (163)
T ss_dssp SHHHHHHHHHHHCCTTCEEEEECSSC
T ss_pred CHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 3556667777777777877776 888
No 25
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=32.43 E-value=2e+02 Score=23.22 Aligned_cols=63 Identities=11% Similarity=0.103 Sum_probs=33.9
Q ss_pred hhHHHHHHHh--hCCEEEEcCcccccccCchhHhhhhcCcceeecchhhHHHHHHHHHHhcCC--CCEEEEecCCC
Q psy11146 15 ITVKGLEIVK--KCDRVYLEAYTSILIDDIIDDMKSFYGKDIIIADREMVESASDVILHNADV--EDVALLVVGDP 86 (271)
Q Consensus 15 lT~~A~~~L~--~aDvv~~~~~~s~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~i~~~~~~--~~V~~l~~GDP 86 (271)
-...|.+.++ .+|+|+....+ ...++...+.+|+...... .+.+ +.+..+++ ++|+++..++.
T Consensus 51 av~~a~~~~~~~~~dVIISRGgt-------a~~Lr~~~~iPVV~I~vs~-~Dil-~aL~~a~~~~~kIavVg~~~~ 117 (225)
T 2pju_A 51 AVTYIRKKLANERCDAIIAAGSN-------GAYLKSRLSVPVILIKPSG-YDVL-QFLAKAGKLTSSIGVVTYQET 117 (225)
T ss_dssp HHHHHHHHTTTSCCSEEEEEHHH-------HHHHHTTCSSCEEEECCCH-HHHH-HHHHHTTCTTSCEEEEEESSC
T ss_pred HHHHHHHHHhcCCCeEEEeCChH-------HHHHHhhCCCCEEEecCCH-HHHH-HHHHHHHhhCCcEEEEeCchh
Confidence 3344555555 38999875332 4556655566665322211 1222 23344444 78888887665
No 26
>3gx1_A LIN1832 protein; APC63308.2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Listeria innocua CLIP11262}
Probab=32.33 E-value=86 Score=22.97 Aligned_cols=52 Identities=17% Similarity=0.082 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCC-CCEEEEe-cCCCCCCCcHHHHHHHHhcCCCCEEEEcCchHHHHH
Q psy11146 62 VESASDVILHNADV-EDVALLV-VGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAA 118 (271)
Q Consensus 62 ~~~~~~~i~~~~~~-~~V~~l~-~GDP~~~~~~~~l~~~~~~~~~~v~iiPGiSs~~a~ 118 (271)
..+.+.+.++...+ +.|.+|+ -|-|+-.+ ..+. . ..+.++++|.|++--.++
T Consensus 47 ~~~~i~~~i~~~d~~~GVLiL~DmGSp~n~a--~~l~-~--~~~~~v~vI~gvnlpmll 100 (130)
T 3gx1_A 47 MYEKLKQTVVKLNPVKGVLILSDMGSLTSFG--NILT-E--ELGIRTKTVTMVSTPVVL 100 (130)
T ss_dssp HHHHHHHHHHTSCCTTCEEEEECSGGGGTHH--HHHH-H--HHCCCEEEECSCCHHHHH
T ss_pred HHHHHHHHHHhhCCCCCEEEEEeCCCHHHHH--HHHH-H--hcCCCEEEEeCCCHHHHH
Confidence 33444555555555 6788877 88774322 1221 1 226789999999886544
No 27
>1xnl_A ASLV/FP, membrane protein GP37; fusion protein, virus entry, membrane fusion, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=27.86 E-value=24 Score=18.60 Aligned_cols=11 Identities=9% Similarity=-0.012 Sum_probs=8.7
Q ss_pred EcCchHHHHHH
Q psy11146 109 VHNASILNAAG 119 (271)
Q Consensus 109 iPGiSs~~a~a 119 (271)
-|||++.||+.
T Consensus 12 aPGvaAAqAL~ 22 (29)
T 1xnl_A 12 APGVAAAQALR 22 (29)
T ss_dssp STTTHHHHHHH
T ss_pred CccHHHHHHHH
Confidence 59999988763
No 28
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=26.84 E-value=1.1e+02 Score=23.76 Aligned_cols=52 Identities=15% Similarity=0.119 Sum_probs=34.3
Q ss_pred EEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCc-hhHhhhhcCccee
Q psy11146 4 VVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDI-IDDMKSFYGKDII 55 (271)
Q Consensus 4 iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~~s~~~~~~-~~~l~~~~~~~v~ 55 (271)
-+++=|-|++.|.-.-.++++++|+|+.....+..+.++ .+.+....++++.
T Consensus 41 ~~~iv~Dd~~~I~~~l~~a~~~~DlVittGG~g~~~~D~T~ea~a~~~~~~l~ 93 (172)
T 3kbq_A 41 RGFVVMDDLDEIGWAFRVALEVSDLVVSSGGLGPTFDDMTVEGFAKCIGQDLR 93 (172)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHCSEEEEESCCSSSTTCCHHHHHHHHHTCCCE
T ss_pred EEEEeCCCHHHHHHHHHHHHhcCCEEEEcCCCcCCcccchHHHHHHHcCCCee
Confidence 344457788888888888899999999754433322111 5566666676654
No 29
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=24.76 E-value=35 Score=26.56 Aligned_cols=30 Identities=7% Similarity=0.172 Sum_probs=21.7
Q ss_pred EEEEecCCCCcchhhHHHHHHHhhCCEEEEcCc
Q psy11146 2 FYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAY 34 (271)
Q Consensus 2 l~iVG~GPGdp~llT~~A~~~L~~aDvv~~~~~ 34 (271)
|-|||.||.. ||....=+-+..+|++++..
T Consensus 5 V~IIGaGpaG---L~aA~~La~~G~~V~v~Ek~ 34 (336)
T 3kkj_A 5 IAIIGTGIAG---LSAAQALTAAGHQVHLFDKS 34 (336)
T ss_dssp EEEECCSHHH---HHHHHHHHHTTCCEEEECSS
T ss_pred EEEECcCHHH---HHHHHHHHHCCCCEEEEECC
Confidence 6799999975 55555444456799999854
No 30
>3c66_C PRE-mRNA polyadenylation factor FIP1; peptide-protein complex, mRNA processing, nucleus, RNA-bindi transferase, phosphoprotein; HET: MES; 2.60A {Saccharomyces cerevisiae}
Probab=22.80 E-value=16 Score=18.98 Aligned_cols=12 Identities=25% Similarity=0.537 Sum_probs=8.2
Q ss_pred EEEecCCCCcchh
Q psy11146 3 YVVGLGLGDVKDI 15 (271)
Q Consensus 3 ~iVG~GPGdp~ll 15 (271)
+|||+|| |+--|
T Consensus 4 fIIs~G~-D~trL 15 (26)
T 3c66_C 4 VIISLGP-DPTRL 15 (26)
T ss_dssp EESCSSS-STTEE
T ss_pred EEEecCC-Ccccc
Confidence 5789998 55444
No 31
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=22.63 E-value=2.5e+02 Score=21.07 Aligned_cols=92 Identities=15% Similarity=0.047 Sum_probs=51.5
Q ss_pred HHHHHhcCC-CCEEEEecCCCCCCCcHHHHHHHHhcCCCCEEEEc-CchHHHH-HHHcCCccccccceeEEeeecCCCCC
Q psy11146 67 DVILHNADV-EDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVH-NASILNA-AGCCGLQLYNFGETVSIPFWTESWKP 143 (271)
Q Consensus 67 ~~i~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~~~~~~~~v~iiP-GiSs~~a-~a~~g~~l~~~~~~v~i~~~~~~~~~ 143 (271)
+++++...+ ++|.++-.|.. +....++..+....|.++..++ +.+.+.. +...+- ..+. ..+|..|..
T Consensus 30 ~~~~~~i~~a~~I~i~G~G~S--~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~------~d~~-i~iS~sG~t 100 (187)
T 3sho_A 30 EAAVEAICRADHVIVVGMGFS--AAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLANLRP------TDLM-IGVSVWRYL 100 (187)
T ss_dssp HHHHHHHHHCSEEEEECCGGG--HHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTCCT------TEEE-EEECCSSCC
T ss_pred HHHHHHHHhCCEEEEEecCch--HHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhcCCC------CCEE-EEEeCCCCC
Confidence 334444444 67777767754 2233334444456799999999 4444443 232221 1222 244556655
Q ss_pred CchhhHHHhhhccCcceeeeeccc
Q psy11146 144 DSFYDKIVENKSRGLHTLCLLDIQ 167 (271)
Q Consensus 144 ~~~~~~i~~~~~~~~~~~~l~~~~ 167 (271)
.+..+.++...+.|..++.+++..
T Consensus 101 ~~~~~~~~~ak~~g~~vi~IT~~~ 124 (187)
T 3sho_A 101 RDTVAALAGAAERGVPTMALTDSS 124 (187)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESCT
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCC
Confidence 555666666667788888888653
No 32
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=21.88 E-value=1.2e+02 Score=22.98 Aligned_cols=39 Identities=31% Similarity=0.235 Sum_probs=27.0
Q ss_pred HHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHhcC-CCCEEEEc
Q psy11146 68 VILHNADVEDVALLVVGDPYGATTHTDLVLRARQS-NIPTKVVH 110 (271)
Q Consensus 68 ~i~~~~~~~~V~~l~~GDP~~~~~~~~l~~~~~~~-~~~v~iiP 110 (271)
.+++.+..-+.++|++||- -+..++.++++. |..|.++.
T Consensus 101 D~~~~a~~~d~~vLvSgD~----DF~plv~~lr~~~G~~V~v~g 140 (165)
T 2qip_A 101 DAIEIAPDVDRVILVSGDG----DFSLLVERIQQRYNKKVTVYG 140 (165)
T ss_dssp HHHHHGGGCSEEEEECCCG----GGHHHHHHHHHHHCCEEEEEE
T ss_pred HHHHhhccCCEEEEEECCh----hHHHHHHHHHHHcCcEEEEEe
Confidence 4555554478899999994 455566666674 88887774
No 33
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=20.75 E-value=3e+02 Score=21.38 Aligned_cols=61 Identities=15% Similarity=0.104 Sum_probs=31.1
Q ss_pred HHHHHHHhhCCEEEEcCcccccccCchhHhhhhcCcceeecchhhHHHHHHHHHHhcCC--CCEEEEecCCC
Q psy11146 17 VKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKDIIIADREMVESASDVILHNADV--EDVALLVVGDP 86 (271)
Q Consensus 17 ~~A~~~L~~aDvv~~~~~~s~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~i~~~~~~--~~V~~l~~GDP 86 (271)
..|.+.=+.+|+|+....+ ...++...+.+++......+ +.++ .+..+++ ++++++..++.
T Consensus 43 ~~a~~~~~~~dVIISRGgt-------a~~lr~~~~iPVV~I~~s~~-Dil~-al~~a~~~~~kIavvg~~~~ 105 (196)
T 2q5c_A 43 KIAFGLQDEVDAIISRGAT-------SDYIKKSVSIPSISIKVTRF-DTMR-AVYNAKRFGNELALIAYKHS 105 (196)
T ss_dssp HHHHHHTTTCSEEEEEHHH-------HHHHHTTCSSCEEEECCCHH-HHHH-HHHHHGGGCSEEEEEEESSC
T ss_pred HHHHHhcCCCeEEEECChH-------HHHHHHhCCCCEEEEcCCHh-HHHH-HHHHHHhhCCcEEEEeCcch
Confidence 3344432468888875332 45566555666653221111 2222 2223333 67888877665
No 34
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=20.54 E-value=1.7e+02 Score=24.38 Aligned_cols=12 Identities=8% Similarity=0.058 Sum_probs=8.4
Q ss_pred HHHHhhCCEEEE
Q psy11146 20 LEIVKKCDRVYL 31 (271)
Q Consensus 20 ~~~L~~aDvv~~ 31 (271)
.++++++|+|+-
T Consensus 68 ~~ll~~~DVVID 79 (272)
T 4f3y_A 68 ERVCAEADYLID 79 (272)
T ss_dssp HHHHHHCSEEEE
T ss_pred HHHhcCCCEEEE
Confidence 345678898875
Done!