RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11146
(271 letters)
>gnl|CDD|185500 PTZ00175, PTZ00175, diphthine synthase; Provisional.
Length = 270
Score = 411 bits (1058), Expect = e-146
Identities = 156/268 (58%), Positives = 199/268 (74%), Gaps = 3/268 (1%)
Query: 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKDIIIADRE 60
M Y++GLGLGD KDITVKGLE VK D VYLE+YTSILI+ + ++ FYGK +I ADRE
Sbjct: 2 MLYIIGLGLGDEKDITVKGLEAVKSADVVYLESYTSILINSNKEKLEEFYGKPVIEADRE 61
Query: 61 MVESASDVILHNADVEDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAAGC 120
MVE D IL A ++VA LVVGDP+ ATTHTDL LRA++ I +V+HNASI+NA GC
Sbjct: 62 MVEEGCDEILEEAKEKNVAFLVVGDPFCATTHTDLYLRAKKKGIEVEVIHNASIMNAIGC 121
Query: 121 CGLQLYNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKT 180
GLQLY FGETVSIPF+TE+WKPDSFYDKI N+ GLHTLCLLDI+VKE ++E+L K
Sbjct: 122 TGLQLYRFGETVSIPFFTETWKPDSFYDKIKANRDNGLHTLCLLDIKVKERSVENLMKGR 181
Query: 181 RQYLPPRFMSVSQAAQQLVEITKTKPGLSTAD--LAVGIARVGSETQHIVATSLSNMTET 238
+ Y PPR+M+++QA +QL+E+ + K G A+ L VG+ARVGS+ Q IV+ +L ++ +
Sbjct: 182 KIYEPPRYMTINQAIEQLLEVEEKKGGGVIAEDTLVVGVARVGSDDQQIVSGTLEDLLDV 241
Query: 239 DMGKPLHSLIIVG-NIHPVESEFLAQYS 265
D G PLHSL+I +H +E EF Y
Sbjct: 242 DFGPPLHSLVICAPTLHDIEEEFFELYR 269
>gnl|CDD|212506 cd11647, Diphthine_synthase, Diphthine synthase, also known as
DPH5. Diphthine synthase, also known as diphthamide
biosynthesis S-adenosylmethionine-dependent
methyltransferase, participates in the posttranslational
modification of a specific histidine residue in
elongation factor 2 (EF-2) of eukaryotes and archaea to
diphthamide. It catalyzes the trimethylation step in
diphthamide biosynthesis. Diphthamide is the target of
diphtheria toxin, which ADP-ribosylates diphthamide and
inhibits protein synthesis, leading to host cell death.
Length = 241
Score = 382 bits (983), Expect = e-136
Identities = 152/255 (59%), Positives = 187/255 (73%), Gaps = 18/255 (7%)
Query: 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKDIIIADRE 60
M Y+VGLGLGD KDIT+KGLE VKK D+VYLEAYTSIL+ ++ ++ FYGK+II+ADRE
Sbjct: 1 MLYLVGLGLGDEKDITLKGLEAVKKADKVYLEAYTSILMGGTLEALEEFYGKEIIVADRE 60
Query: 61 MVESASDVILHNADVEDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAAGC 120
VE SD IL A +DVALLVVGDP+ ATTH+DL LRA++ I +V+HNASILNA G
Sbjct: 61 DVEEESDEILEEAKEKDVALLVVGDPFIATTHSDLRLRAKERGIEVRVIHNASILNAVGS 120
Query: 121 C-GLQLYNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKK 179
C GLQLY FG+TV+IPF TE W+PDS YD I EN SRGLHTLCLLDI+VKE
Sbjct: 121 CSGLQLYKFGKTVTIPFPTEGWRPDSPYDVIKENLSRGLHTLCLLDIKVKE--------- 171
Query: 180 TRQYLPPRFMSVSQAAQQLVEI-TKTKPGLSTAD-LAVGIARVGSETQHIVATSLSNMTE 237
PR+M+ ++AA+QL+EI + K G+ + D LAVG+AR+GSE Q IVA +L +
Sbjct: 172 ------PRYMTANEAAEQLLEIEEERKEGVISEDTLAVGVARLGSEDQKIVAGTLEELAN 225
Query: 238 TDMGKPLHSLIIVGN 252
D G PLHSL+I G
Sbjct: 226 YDFGGPLHSLVIPGK 240
>gnl|CDD|224711 COG1798, DPH5, Diphthamide biosynthesis methyltransferase
[Translation, ribosomal structure and biogenesis].
Length = 260
Score = 313 bits (803), Expect = e-108
Identities = 123/268 (45%), Positives = 171/268 (63%), Gaps = 19/268 (7%)
Query: 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKDIIIADRE 60
M Y+VGLGL D DIT+KGLE V+K DRVY E YTSIL+ ++ ++ GK++I+ DRE
Sbjct: 1 MLYLVGLGLYDEGDITLKGLEAVRKADRVYAEFYTSILLGSNLEKLEELIGKEVILLDRE 60
Query: 61 MVESASDVILHNADVEDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAA-G 119
+E S IL A +DVALLV GDP ATTH DL + A++ I +V+H ASI+NAA G
Sbjct: 61 DLEENSRSILDRAKDKDVALLVAGDPMVATTHVDLRIEAKRRGIEVRVIHGASIINAAIG 120
Query: 120 CCGLQLYNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKK 179
GLQ Y FG+TV++PF +E++ P S YD I EN RGLHTL LLDI+ E
Sbjct: 121 LTGLQNYKFGKTVTLPFPSENFFPTSPYDVIKENLERGLHTLVLLDIKEDE--------- 171
Query: 180 TRQYLPPRFMSVSQAAQQLVEIT-KTKPGLSTAD-LAVGIARVGSETQHIVATSLSNMTE 237
R+M+ ++A + L+E + G+ T D LAV +AR GS + + A +L + +
Sbjct: 172 -------RYMTANEALELLLEAEERRGRGVLTEDTLAVVVARAGSGDEVVRAGTLEELAD 224
Query: 238 TDMGKPLHSLIIVGNIHPVESEFLAQYS 265
D G+PLHSL++ G +H VE+E+L + +
Sbjct: 225 EDFGEPLHSLVVPGRLHFVEAEYLRELA 252
>gnl|CDD|235231 PRK04160, PRK04160, diphthine synthase; Provisional.
Length = 258
Score = 283 bits (727), Expect = 1e-96
Identities = 112/265 (42%), Positives = 157/265 (59%), Gaps = 20/265 (7%)
Query: 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKDIIIADRE 60
M Y +GLGL D +DIT+KGLE ++ D+VY E YTSIL+ I+ ++ GK+II+ DRE
Sbjct: 1 MLYFIGLGLYDERDITLKGLEALRNADKVYAEFYTSILMGTTIEKLEELIGKEIIVLDRE 60
Query: 61 MVESASDVILHNADVE-DVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAA- 118
VE S+ I+ E +VA L GDP ATTH DL L A++ I +V+H SI +AA
Sbjct: 61 DVEQESEKIILEEAKEKNVAFLTAGDPMVATTHVDLRLEAKKRGIEVRVIHGVSIYSAAI 120
Query: 119 GCCGLQLYNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTK 178
GLQ Y FG++V++PF ++ P+S YD I +N RGLHTL LLDI+
Sbjct: 121 SLTGLQNYKFGKSVTVPFPYGNFFPESPYDVIKDNLERGLHTLVLLDIKADG-------- 172
Query: 179 KTRQYLPPRFMSVSQAAQQLVEI-TKTKPGLSTAD-LAVGIARVGSETQHIVATSLSNMT 236
R+M+ ++A + L+E+ K G+ + D LAV +AR GS + A L +
Sbjct: 173 --------RYMTANEALELLLELEEKRGEGVISEDTLAVVVARAGSPDPVVRAGRLEELA 224
Query: 237 ETDMGKPLHSLIIVGNIHPVESEFL 261
+ D G PLH LII G +H +E+E L
Sbjct: 225 DYDFGGPLHILIIPGKLHFMEAEAL 249
>gnl|CDD|233007 TIGR00522, dph5, diphthine synthase. Alternate name: diphthamide
biosynthesis S-adenosylmethionine-dependent
methyltransferase. This protein participates in the
modification of a specific His of elongation factor 2 of
eukarotes and Archaea to diphthamide. The protein was
characterized in Saccharomyces cerevisiae and designated
DPH5 [Protein fate, Protein modification and repair].
Length = 257
Score = 280 bits (718), Expect = 2e-95
Identities = 113/269 (42%), Positives = 164/269 (60%), Gaps = 19/269 (7%)
Query: 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKDIIIADRE 60
M Y++GLGL D DI+VKGLE +KK D VY E YTS L+ I++++ F+GK +++ +R
Sbjct: 1 MLYLIGLGLYDENDISVKGLEAIKKADEVYAEFYTSKLLGSSIEEIEEFFGKRVVVLERS 60
Query: 61 MVESASDVILHNADVEDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAA-G 119
VE S ++ A +DVALLV GDP ATTHTDL L A++ I T+++H ASI +A G
Sbjct: 61 DVEENSFRLIERAKSKDVALLVAGDPMVATTHTDLKLEAKRKGIETRIIHGASISSAVCG 120
Query: 120 CCGLQLYNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKK 179
GLQLY FG+T +I F+T++++P + Y+ I EN+ GLHTL LLDI KE
Sbjct: 121 LTGLQLYKFGKTATIVFFTDNYRPQTPYNVIKENRKIGLHTLVLLDIHPKE--------- 171
Query: 180 TRQYLPPRFMSVSQAAQQLVEIT-KTKPGLSTADL-AVGIARVGSETQHIVATSLSNMTE 237
R M++ + + L+E K K G T D AV IAR GS + + N+
Sbjct: 172 ------NRAMTIGEGLENLLEEEEKRKTGAITPDTYAVVIARAGSGKPVVKCDKIENLKN 225
Query: 238 TDMGKPLHSLIIVG-NIHPVESEFLAQYS 265
D G+PLH L+++ +H +E E+L +++
Sbjct: 226 YDFGEPLHCLVVLAKTLHFMEFEYLREFA 254
>gnl|CDD|216012 pfam00590, TP_methylase, Tetrapyrrole (Corrin/Porphyrin)
Methylases. This family uses S-AdoMet in the
methylation of diverse substrates. This family includes
a related group of bacterial proteins of unknown
function. This family includes the methylase Dipthine
synthase.
Length = 202
Score = 73.5 bits (181), Expect = 8e-16
Identities = 49/236 (20%), Positives = 92/236 (38%), Gaps = 36/236 (15%)
Query: 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKDIIIADRE 60
Y+VG+G GD + +T++ L +K+ D V + ++ D++ M +++ E
Sbjct: 1 KLYIVGIGPGDPELLTLRALRALKEADVVIGDDRALEILLDLLRPMG--KELELLEGAYE 58
Query: 61 MVESASDVILHNADVEDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAAGC 120
+ + +DV +LV GDP T + LV + I +V+ S L AA
Sbjct: 59 EIAELLEAAALLRAGKDVVVLVSGDPLVYGTGSYLVEALEAAGIEVEVIPGISSLQAAAA 118
Query: 121 C-GLQLYNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKK 179
G+ L + G E+ + + TL LL
Sbjct: 119 RLGIPLTDGGVVSLHGRGLETLRAR------LLEALLAGDTLVLLTD------------- 159
Query: 180 TRQYLPPRFMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATSLSNM 235
P R ++ A+ L+E+ G +AV + +G+ + I+ +L+ +
Sbjct: 160 -----PHRL---AEIAELLLEL-----GDDDTPVAV-VENLGTPDERIIRGTLAEL 201
>gnl|CDD|212499 cd09815, TP_methylase, S-AdoMet dependent tetrapyrrole methylases.
This family uses S-AdoMet (S-adenosyl-L-methionine or
SAM) in the methylation of diverse substrates. Most
members catalyze various methylation steps in cobalamin
(vitamin B12) biosynthesis. There are two distinct
cobalamin biosynthetic pathways in bacteria. The aerobic
pathway requires oxygen, and cobalt is inserted late in
the pathway; the anaerobic pathway does not require
oxygen, and cobalt insertion is the first committed step
towards cobalamin synthesis. The enzymes involved in the
aerobic pathway are prefixed Cob and those of the
anaerobic pathway Cbi. Most of the enzymes are shared by
both pathways and a few enzymes are pathway-specific.
Diphthine synthase and Ribosomal RNA small subunit
methyltransferase I (RsmI) are two superfamily members
that are not involved in cobalamin biosynthesis.
Diphthine synthase participates in the posttranslational
modification of a specific histidine residue in
elongation factor 2 (EF-2) of eukaryotes and archaea to
diphthamide. RsmI catalyzes the 2-O-methylation of the
ribose of cytidine 1402 (C1402) in 16S rRNA using
S-adenosylmethionine (Ado-Met) as the methyl donor.
Length = 224
Score = 58.2 bits (141), Expect = 3e-10
Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 8/124 (6%)
Query: 2 FYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKDIIIADREM 61
Y VG G GD +T++ +E+++ D V ++ S L+ + G +I+ E
Sbjct: 1 LYFVGAGPGDPDLLTLRAVEVLRSADVVVVDDKVSELL-RLKPRAHLPDGAEIVELVDEE 59
Query: 62 ------VESASDVILHNADVE-DVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASI 114
+ + +L A DV LV GDP A +L A + + +VV S
Sbjct: 60 EDDHGVLAEVARTLLEAARQGRDVVRLVAGDPLLAGPGAELRAVAEDAGVDVEVVPGVSS 119
Query: 115 LNAA 118
A
Sbjct: 120 ATAV 123
>gnl|CDD|212504 cd11645, Precorrin_2_C20_MT, Precorrin-2 C20-methyltransferase,
also named CobI or CbiL. Precorrin-2
C20-methyltransferase participates in the pathway toward
the biosynthesis of cobalamin (vitamin B12). There are
two distinct cobalamin biosynthetic pathways in
bacteria. The aerobic pathway requires oxygen, and
cobalt is inserted late in the pathway; the anaerobic
pathway does not require oxygen, and cobalt insertion is
the first committed step towards cobalamin synthesis.
Precorrin-2 C20-methyltransferase catalyzes methylation
at the C-20 position of a cyclic tetrapyrrole ring of
precorrin-2 using S-adenosylmethionine as a methyl group
source to produce precorrin-3A. In the anaerobic
pathway, cobalt is inserted into precorrin-2 by CbiK to
generate cobalt-precorrin-2, which is the substrate for
CbiL, a C20 methyltransferase. In Clostridium difficile,
CbiK and CbiL are fused into a bifunctional enzyme. In
the aerobic pathway, the precorrin-2
C20-methyltransferase is named CobI. This family
includes CbiL and CobI precorrin-2
C20-methyltransferases, both as stand-alone enzymes and
when CbiL forms part of a bifunctional enzyme.
Length = 226
Score = 55.6 bits (135), Expect = 3e-09
Identities = 29/124 (23%), Positives = 58/124 (46%), Gaps = 17/124 (13%)
Query: 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVY--------LEAYTSILIDDIIDDMK----S 48
Y VG+G GD + +T+K + I+++ D + A I++ +I + +
Sbjct: 1 KLYGVGVGPGDPELLTLKAVRILREADVIAVPGSKAGEGSAALIIVVAYLIPEKEILPLE 60
Query: 49 F-YGKDIIIADREMVESASDVILHNADVEDVALLVVGDP--YGATTHTDLVLRARQSNIP 105
F KD + + E+A+++ +DVA L +GDP Y ++ L+ R R+ +
Sbjct: 61 FPMTKDKEVLEEAWDEAAAEIAAELEAGKDVAFLTLGDPSLYSTFSY--LLRRLREPGVE 118
Query: 106 TKVV 109
+ +
Sbjct: 119 VETI 122
>gnl|CDD|225152 COG2243, CobF, Precorrin-2 methylase [Coenzyme metabolism].
Length = 234
Score = 53.8 bits (130), Expect = 1e-08
Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 17/124 (13%)
Query: 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYT---SI---LIDDIID-DMKS-FYGK 52
Y VGLG GD + +T+K + +KK D VY+ + S+ +++D + +
Sbjct: 3 KLYGVGLGPGDPELLTLKAIRALKKADVVYVPSKKGKGSLAREIVEDYLTPGSRIVELHF 62
Query: 53 DIIIADREMV-----ESASDVILHNADVEDVALLVVGDP--YGATTHTDLVLRARQSNIP 105
+ RE + E+A++V DVA L +GDP Y + L+ R R+
Sbjct: 63 PMTTDMREELEDAWEEAAAEVAAELEAGRDVAFLTLGDPTFYSTFMY--LLERLRERGFE 120
Query: 106 TKVV 109
+VV
Sbjct: 121 VEVV 124
>gnl|CDD|233425 TIGR01467, cobI_cbiL, precorrin-2 C20-methyltransferase. This
model represents precorrin-2 C20-methyltransferase, one
of several closely related
S-adenosylmethionine-dependent methyltransferases
involved in cobalamin (vitamin B12) biosynthesis
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Heme, porphyrin, and cobalamin].
Length = 230
Score = 47.3 bits (113), Expect = 2e-06
Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 14/132 (10%)
Query: 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTS---ILIDDIIDDMKSFYGKDII-- 55
Y VG+G GD + ITVK LE ++ D + + A L I++D I+
Sbjct: 2 KLYGVGVGPGDPELITVKALEALRSADVIAVPASKKGRESLARKIVEDYLKPNDTRILEL 61
Query: 56 ----IADREMV-----ESASDVILHNADVEDVALLVVGDPYGATTHTDLVLRARQSNIPT 106
DR+ + E+A V + DVA L +GDP +T + L+ R + I
Sbjct: 62 VFPMTKDRDELEKAWDEAAEAVAAELEEGRDVAFLTLGDPSLYSTFSYLLQRLQGMGIEV 121
Query: 107 KVVHNASILNAA 118
+VV + A
Sbjct: 122 EVVPGITSFAAC 133
>gnl|CDD|226465 COG3956, COG3956, Protein containing tetrapyrrole methyltransferase
domain and MazG-like (predicted pyrophosphatase) domain
[General function prediction only].
Length = 488
Score = 48.3 bits (115), Expect = 2e-06
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 5/122 (4%)
Query: 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKDIIIADRE 60
VVGLG GD +T+ +++K D +Y+ +I+++ ++ F D I E
Sbjct: 4 TITVVGLGAGDKDQLTLGIYKLLKNQDNLYVRTKDHPVIEELDEEGIKFSFFDDIYETHE 63
Query: 61 MVESASDVI----LHNADVEDVALLVVGDPYGA-TTHTDLVLRARQSNIPTKVVHNASIL 115
E+ D I + A +D+ V G P A T L+ + NI K++ S +
Sbjct: 64 QFEAVYDFIAADLVEAAKEKDIVYAVPGHPLVAEKTVQLLIEACEKENIKVKILGGQSFI 123
Query: 116 NA 117
+A
Sbjct: 124 DA 125
>gnl|CDD|235512 PRK05576, PRK05576, cobalt-precorrin-2 C(20)-methyltransferase;
Validated.
Length = 229
Score = 43.4 bits (103), Expect = 4e-05
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVY 30
Y +GLG GD + +TVK I+++ D VY
Sbjct: 3 KLYGIGLGPGDPELLTVKAARILEEADVVY 32
>gnl|CDD|212503 cd11644, Precorrin-6Y-methylase, Precorrin-6Y methyltransferase,
the cobalamin biosynthesis enzyme CbiE. Precorrin-6Y
methyltransferase participates in the pathway toward
the biosynthesis of cobalamin (vitamin B12). There are
two distinct cobalamin biosynthetic pathways in
bacteria. The aerobic pathway requires oxygen, and
cobalt is inserted late in the pathway; the anaerobic
pathway does not requires oxygen, and cobalt insertion
is the first committed step towards cobalamin
synthesis. This model represents the CbiE subunit of
precorrin-6Y C5,15-methyltransferase from the anaerobic
pathway, a bifunctional enzyme that catalyzes two
methylations (at C-5 and C-15) in precorrin-6Y, as well
as the decarboxylation of the acetate side chain
located in ring C, in order to generate precorrin-8X.
In the anaerobic pathway, two enzymes are required to
produce precorrin-8X: CbiE and CbiT, which can be fused
as CbiET (sometimes called CobL). In the aerobic
pathway, the bifunctional enzyme is called CobL.
Length = 201
Score = 42.5 bits (101), Expect = 6e-05
Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 24/95 (25%)
Query: 2 FYVVGLGLGDVKDITVKGLEIVKKCDRVY-----LEAYTSILIDDIIDDMKSFYGKDIII 56
VVG+G G +T E +++ D + LE + + I +
Sbjct: 1 ITVVGIGPGGPDGLTPAAREAIEEADVLVGGKRHLELF------------PDLGAEKIPL 48
Query: 57 ADREMVESASDVI-LHNADVEDVALLVVGDP--YG 88
++ ++++ A V +L GDP YG
Sbjct: 49 PSDDL----AELLERLAAAGRRVVVLASGDPLFYG 79
>gnl|CDD|225430 COG2875, CobM, Precorrin-4 methylase [Coenzyme metabolism].
Length = 254
Score = 41.1 bits (97), Expect = 2e-04
Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 23/126 (18%)
Query: 3 YVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKDIIIADREMV 62
Y +G G GD ITVKG +++K D V + A S++ ++++ + D E+V
Sbjct: 6 YFIGAGPGDPDLITVKGQRLLEKAD-VVIYA-GSLVPPELLEYCR---------PDAEIV 54
Query: 63 ESAS-------DVILH-NADVEDVALLVVGDP--YGATTHTDLVLRARQSNIPTKVVHNA 112
SAS D+++ + +DV L GDP YGA L A IP +VV
Sbjct: 55 NSASLTLEEIIDLMVDAVREGKDVVRLHSGDPSIYGALAEQMRELEAL--GIPYEVVPGV 112
Query: 113 SILNAA 118
S AA
Sbjct: 113 SSFAAA 118
>gnl|CDD|223942 COG1010, CobJ, Precorrin-3B methylase [Coenzyme metabolism].
Length = 249
Score = 41.1 bits (97), Expect = 2e-04
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 10/91 (10%)
Query: 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKDIIIAD-R 59
YVVG+G GD + +T + +++ D + YT+ L D ++ GK++I + R
Sbjct: 4 KLYVVGIGPGDPELMTPEARRALEEADVIV--GYTTYL-----DLIELRPGKEVIRSGMR 56
Query: 60 EMVESASDVILHNADVEDVALLVVGDP--YG 88
E +E A + I A+ DVAL+ GDP YG
Sbjct: 57 EEIERAKEAIELAAEGRDVALVSSGDPGVYG 87
>gnl|CDD|235609 PRK05787, PRK05787, cobalt-precorrin-6Y C(5)-methyltransferase;
Validated.
Length = 210
Score = 41.0 bits (97), Expect = 3e-04
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 18/91 (19%)
Query: 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVY-----LEAYTSILIDDIIDDMKSFYGKDII 55
M Y+VG+G GD + +T+K LE ++K D V LE L ++ID +
Sbjct: 1 MIYIVGIGPGDPEYLTLKALEAIRKADVVVGSKRVLE-----LFPELIDGEAFVLTAGL- 54
Query: 56 IADREMVESASDVILHNADVEDVALLVVGDP 86
R+++E + L ++V +L GDP
Sbjct: 55 ---RDLLEW---LELAAKG-KNVVVLSTGDP 78
>gnl|CDD|212500 cd11641, Precorrin-4_C11-MT, Precorrin-4 C11-methyltransferase
(CbiF/CobM). Precorrin-4 C11-methyltransferase
participates in the pathway toward the biosynthesis of
cobalamin (vitamin B12). There are two distinct
cobalamin biosynthetic pathways in bacteria. The aerobic
pathway requires oxygen, and cobalt is inserted late in
the pathway; the anaerobic pathway does not require
oxygen, and cobalt insertion is the first committed step
towards cobalamin synthesis. In the aerobic pathway,
CobM catalyzes the methylation of precorrin-4 at C-11 to
yield precorrin-5. In the anaerobic pathway, CibF
catalyzes the methylation of cobalt-precorrin-4 to
cobalt-precorrin-5. Both CibF and CobM, which are
homologous, are included in this model. There are about
30 enzymes involved in vitamin B12 synthetic pathway.
The enzymes involved in the aerobic pathway are prefixed
Cob and those of the anaerobic pathway Cbi. Most of the
enzymes are shared in both pathways and several of these
enzymes are pathway-specific.
Length = 228
Score = 39.3 bits (93), Expect = 8e-04
Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 25/118 (21%)
Query: 3 YVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILI-DDIIDDMKSFYGKDIIIADREM 61
Y VG G GD + ITVKG ++++ D V Y L+ ++++ + D E+
Sbjct: 2 YFVGAGPGDPELITVKGRRLLEEADVVI---YAGSLVPPELLEYAR---------PDAEI 49
Query: 62 VESAS-------DVILHNADV-EDVALLVVGDP--YGATTHTDLVLRARQSNIPTKVV 109
+SAS ++ A +DV L GDP YGA L A IP +VV
Sbjct: 50 YDSASMTLEEIIALMKEAAREGKDVVRLHTGDPSLYGAIREQMRELDAL--GIPYEVV 105
>gnl|CDD|225150 COG2241, CobL, Precorrin-6B methylase 1 [Coenzyme metabolism].
Length = 210
Score = 38.8 bits (91), Expect = 0.001
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 17/91 (18%)
Query: 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVY-----LEAYTSILIDDIIDDMKSFYGKDII 55
M VVG+G G + +T+ +E +++ D V LE L+ +I + +
Sbjct: 1 MITVVGIGPGGPEGLTLAAIEAIRRADVVAGSKRHLE-----LLPPLIKAERIIWPYPFD 55
Query: 56 IADREMVESASDVILHNADVEDVALLVVGDP 86
E IL DV +L GDP
Sbjct: 56 AESLE-------EILAERKGRDVVVLASGDP 79
>gnl|CDD|233424 TIGR01466, cobJ_cbiH, precorrin-3B C17-methyltransferase. This
model represents precorrin-3B C17-methyltransferase, one
of two methyltransferases commonly referred to as
precorrin-3 methylase (the other is precorrin-4
C11-methyltransferase, EC 2.1.1.133). This enzyme
participates in the pathway toward the biosynthesis of
cobalamin and related products. Members of this family
may appear as fusion proteins with other enzymes of
cobalamin biosynthesis [Biosynthesis of cofactors,
prosthetic groups, and carriers, Heme, porphyrin, and
cobalamin].
Length = 239
Score = 38.0 bits (89), Expect = 0.003
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 7/119 (5%)
Query: 3 YVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKDIIIADREMV 62
YVVG+G G + +T + E + + D + LI+D+I K + RE +
Sbjct: 2 YVVGIGPGAEELMTPEAKEALAEADVIVGYKTYLDLIEDLIPG-KEVVTSGM----REEI 56
Query: 63 ESASDVILHNADVEDVALLVVGDP--YGATTHTDLVLRARQSNIPTKVVHNASILNAAG 119
A I A+ VAL+ GDP YG L + + + +V+ + +AA
Sbjct: 57 ARAELAIELAAEGRTVALVSSGDPGIYGMAALVFEALEKKGAEVDIEVIPGITAASAAA 115
>gnl|CDD|212505 cd11646, Precorrin_3B_C17_MT, Precorrin-3B C(17)-methyltransferase
(CobJ/CbiH). Precorrin-3B C(17)-methyltransferase
participates in the pathway toward the biosynthesis of
cobalamin (vitamin B12). There are two distinct
cobalamin biosynthetic pathways. The aerobic pathway
requires oxygen, and cobalt is inserted late in the
pathway; the anaerobic pathway does not require oxygen,
and cobalt insertion is the first committed step towards
cobalamin synthesis. This model includes CobJ of the
aerobic pathway and CbiH of the anaerobic pathway, both
as stand-alone enzymes and when CobJ forms part of a
bifunctional enzyme. In the aerobic pathway, once CobG
has generated precorrin-3b, CobJ catalyzes the
methylation of precorrin-3b at C-17 to form precorrin-4
(the extruded methylated C-20 fragment is left attached
as an acyl group at C-1). In the corresponding anaerobic
pathway, CbiH carries out this ring contraction, using
cobalt-precorrin-3b as a substrate to generate a
tetramethylated delta-lactone.
Length = 240
Score = 36.7 bits (86), Expect = 0.008
Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 29/129 (22%)
Query: 3 YVVGLGLGDVKDITVKGLEIVKKCDRV-----YLEAYTSILIDDIIDDMKSFYGKDIIIA 57
YVVG+G GD +T + E +++ D V YL+ LI+D+++ GK++I +
Sbjct: 4 YVVGIGPGDPDLMTPRAREAIEEADVVVGYKTYLD-----LIEDLLE------GKEVISS 52
Query: 58 D-REMVESASDVI-LHNADVEDVALLVVGDP--YG-ATTHTDLVL---RARQSNIPTKVV 109
E VE A + L + VAL+ GDP YG A LVL ++ +V+
Sbjct: 53 GMGEEVERARLAVELAREG-KTVALVSSGDPGVYGMAG----LVLELAEKEGDDVEVEVI 107
Query: 110 HNASILNAA 118
+ AA
Sbjct: 108 PGVTAALAA 116
>gnl|CDD|235597 PRK05765, PRK05765, precorrin-3B C17-methyltransferase;
Provisional.
Length = 246
Score = 36.7 bits (85), Expect = 0.008
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 13/122 (10%)
Query: 3 YVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSI--LIDDIIDDMKSFYGKDIIIAD-R 59
Y+VG+G G + T+K E ++K + + Y + LI D++D GK++I A +
Sbjct: 5 YIVGIGPGSKEQRTIKAQEAIEKSNVII--GYNTYLRLISDLLD------GKEVIGARMK 56
Query: 60 EMVESASDVILHNADVEDVALLVVGDP--YGATTHTDLVLRARQSNIPTKVVHNASILNA 117
E + A+ I + VAL+ GDP YG ++ R+ ++ +V+ + A
Sbjct: 57 EEIFRANTAIEKALEGNIVALVSSGDPQVYGMAGLVFELISRRKLDVDVEVIPGVTAALA 116
Query: 118 AG 119
A
Sbjct: 117 AA 118
>gnl|CDD|212510 cd11724, TP_methylase_like, Uncharacterized subfamily of S-AdoMet
dependent tetrapyrrole methylases. TP-methylases use
S-AdoMet (S-adenosyl-L-methionine or SAM) in the
methylation of diverse substrates. Most members
catalyze various methylation steps in cobalamin
(vitamin B12) biosynthesis, other members like
Diphthine synthase and Ribosomal RNA small subunit
methyltransferase I (RsmI) act on other substrates. The
function of this subfamily is not known.
Length = 255
Score = 35.7 bits (83), Expect = 0.014
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 2 FYVVGLGLGDVKDITVKGLEIVKKCDRVY 30
Y+VG+G GD +IT++ LE++ K D ++
Sbjct: 3 LYLVGVGPGDPDNITLRALEVIAKADIIF 31
>gnl|CDD|233878 TIGR02467, CbiE, precorrin-6y C5,15-methyltransferase
(decarboxylating), CbiE subunit. This model recognizes
the CbiE methylase which is responsible, in part (along
with CbiT), for methylating precorrin-6y (or
cobalt-precorrin-6y) at both the 5 and 15 positions as
well as the concomitant decarbozylation at C-12. In
many organisms, this protein is fused to the CbiT
subunit. The fused protein, when found in organisms
catalyzing the oxidative version of the cobalamin
biosynthesis pathway, is called CobL.
Length = 204
Score = 34.6 bits (80), Expect = 0.031
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 10/88 (11%)
Query: 4 VVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKD-IIIADREMV 62
VVG+G G + +T +E ++K D V L + + G+ II + +
Sbjct: 1 VVGIGPGGPELLTPAAIEAIRKADLVV--GGERHL-----ELLAELIGEKREIILTYKDL 53
Query: 63 ESASDVILHNADVEDVALLVVGDP--YG 88
+ + I + V +L GDP YG
Sbjct: 54 DELLEFIAATRKEKRVVVLASGDPLFYG 81
>gnl|CDD|200107 TIGR01465, cobM_cbiF, precorrin-4 C11-methyltransferase. This
model represents precorrin-4 C11-methyltransferase, one
of two methyltransferases commonly referred to as
precorrin-3 methylase (the other is precorrin-3B
C17-methyltransferase, EC 2.1.1.131). This enzyme
participates in the pathway toward the biosynthesis of
cobalamin and related products [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 247
Score = 34.2 bits (79), Expect = 0.042
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 23/126 (18%)
Query: 3 YVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKDIIIADREMV 62
Y +G G GD ITVKG ++++ D V L A S++ +++ + E+V
Sbjct: 2 YFIGAGPGDPDLITVKGRKLIESAD-VILYA-GSLVPPELLAHCR---------PGAEVV 50
Query: 63 ESAS-------DVILHNADV-EDVALLVVGDP--YGATTHTDLVLRARQSNIPTKVVHNA 112
SA D++ +DVA L GDP YGA + + IP +VV
Sbjct: 51 NSAGMSLEEIVDIMSDAHREGKDVARLHSGDPSIYGAI--AEQMRLLEALGIPYEVVPGV 108
Query: 113 SILNAA 118
S AA
Sbjct: 109 SSFFAA 114
>gnl|CDD|182606 PRK10637, cysG, siroheme synthase; Provisional.
Length = 457
Score = 34.3 bits (79), Expect = 0.053
Identities = 74/271 (27%), Positives = 111/271 (40%), Gaps = 67/271 (24%)
Query: 4 VVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDII-----DDMKSFYGKDIIIAD 58
+VG G GD +T+KGL+ +++ D V Y ++ DDI+ D + F GK A
Sbjct: 220 LVGAGPGDAGLLTLKGLQQIQQADVV---VYDRLVSDDIMNLVRRDADRVFVGKR---AG 273
Query: 59 REMV--ESASDVILHNADV-EDVALLVVGDPY----GATTHTDLVLRARQSNIPTKVVHN 111
V E + ++L A + V L GDP+ G L + IP VV
Sbjct: 274 YHCVPQEEINQILLREAQKGKRVVRLKGGDPFIFGRGGEELETLC----NAGIPFSVV-- 327
Query: 112 ASILNAAGC---CGLQLYNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQV 168
I A+GC G+ L + S+ T K D EN + TL
Sbjct: 328 PGITAASGCSAYSGIPLTHRDYAQSVRLVTGHLKTGGELD--WENLAAEKQTLVF----- 380
Query: 169 KEPTLESLTKKTRQYLPPRFMSVSQAA---QQLVEITKTKPGLSTADLAVGIARVG-SET 224
+M ++QAA Q+L+E G+ AD+ V + G S T
Sbjct: 381 -------------------YMGLNQAATIQQKLIE-----HGMP-ADMPVALVENGTSVT 415
Query: 225 QHIVATSLSNMTE--TDMGKPLHSLIIVGNI 253
Q +V+ +L+ + E + P SLIIVG +
Sbjct: 416 QRVVSGTLTQLGELAQQVNSP--SLIIVGRV 444
>gnl|CDD|212509 cd11723, YabN_N, N-terminal S-AdoMet dependent methylase domain of
Bacillus subtilis YabN and related proteins. This
family contains proteins similar to Bacillus subtilis
YabN, which is a fusion of an N-terminal TP-methylase
and a C-terminal MazG-type nucleotide
pyrophosphohydrolase domain. MazG-like NTP-PPases have
been implicated in house-cleaning functions such as
degrading abnormal (d)NTPs. TP-methylases use S-AdoMet
(S-adenosyl-L-methionine or SAM) in the methylation of
diverse substrates. Most members catalyze various
methylation steps in cobalamin (vitamin B12)
biosynthesis, other members like Diphthine synthase and
Ribosomal RNA small subunit methyltransferase I (RsmI)
act on other substrates. The specific function of YabN's
TP-methylase domain is not known.
Length = 220
Score = 33.3 bits (77), Expect = 0.072
Identities = 31/137 (22%), Positives = 56/137 (40%), Gaps = 33/137 (24%)
Query: 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLE---------------AYTSILIDDIIDD 45
+VGLG GD +T+ +K D+++L ++ S D + ++
Sbjct: 1 KITIVGLGPGDPDQLTLGVYRALKAADKIFLRTAIHPVVAELEEEGISFES--FDSVYEE 58
Query: 46 MKSF---YGKDIIIADREMVESASDVILHNADVEDVALLVVGDPYGATTHTDLVL-RARQ 101
++F Y RE+ E +L A DV V G P A L+L +A +
Sbjct: 59 HETFEEVY--------REIAE----ELLEEAKKGDVVYAVPGHPLVAEKTVQLLLEKAEK 106
Query: 102 SNIPTKVVHNASILNAA 118
+ + +++ S L+A
Sbjct: 107 AGVEVEILGGQSFLDAL 123
>gnl|CDD|223390 COG0313, COG0313, Predicted methyltransferases [General function
prediction only].
Length = 275
Score = 33.3 bits (77), Expect = 0.085
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 22/128 (17%)
Query: 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEA--YTSILID--DIIDDMKSFYGKDIII 56
Y+V +G++ DIT++ LE++K+ D + E T L+ I + S++
Sbjct: 6 TLYLVPTPIGNLADITLRALEVLKEVDVIAAEDTRVTRKLLSHLGIKTPLISYH------ 59
Query: 57 ADREMVESASDVILHNADVEDVALL------VVGDPYGATTHTDLVLRARQSNIPTKVVH 110
+ E +I + VAL+ ++ DP G +LV AR++ I +
Sbjct: 60 -EHNEKEKLPKLIPLLKKGKSVALVSDAGTPLISDP-GY----ELVRAAREAGIRVVPLP 113
Query: 111 NASILNAA 118
S L A
Sbjct: 114 GPSALITA 121
>gnl|CDD|223086 COG0007, CysG, Uroporphyrinogen-III methylase [Coenzyme
metabolism].
Length = 244
Score = 32.6 bits (75), Expect = 0.14
Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 30/123 (24%)
Query: 3 YVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKS-----FYGK----- 52
Y+VG G GD +T++ L +++ D V + ++++ + + GK
Sbjct: 7 YLVGAGPGDPGLLTLRALRALQEADVVLYDRLVP---EEVLALARRDAERIYVGKRPGGH 63
Query: 53 ----DIIIADREMVESASDVILHNADVEDVALLVVGDPY--GATTHTDLVLRARQSNIPT 106
D I +VE A + + V L GDPY G L I
Sbjct: 64 SKPQDEIN--ALLVELAR-------EGKRVVRLKGGDPYIFGRGGEEIEALAEA--GIEF 112
Query: 107 KVV 109
+VV
Sbjct: 113 EVV 115
>gnl|CDD|178232 PLN02625, PLN02625, uroporphyrin-III C-methyltransferase.
Length = 263
Score = 32.3 bits (74), Expect = 0.21
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 3 YVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIID 44
++VG G GD +T+K L +++ D V Y ++ DI+D
Sbjct: 18 FLVGTGPGDPDLLTLKALRLLQTADVV---LYDRLVSPDILD 56
>gnl|CDD|212501 cd11642, SUMT, Uroporphyrin-III C-methyltransferase
(S-Adenosyl-L-methionine:uroporphyrinogen III
methyltransferase, SUMT). SUMT, an enzyme of the
cobalamin and siroheme biosynthetic pathway, catalyzes
the transformation of uroporphyrinogen III into
precorrin-2. It transfers two methyl groups from
S-adenosyl-L-methionine to the C-2 and C-7 atoms of
uroporphyrinogen III to yield precorrin-2 via the
intermediate formation of precorrin-1. SUMT is the
first enzyme committed to the biosynthesis of siroheme
or cobalamin (vitamin B12), and precorrin-2 is a common
intermediate in the biosynthesis of corrinoids such as
vitamin B12, siroheme and coenzyme F430. In some
organisms, the SUMT domain is fused to the precorrin-2
oxidase/ferrochelatase domain to form siroheme synthase
or to uroporphyrinogen-III synthase to form
bifunctional uroporphyrinogen-III
methylase/uroporphyrinogen-III synthase.
Length = 233
Score = 31.6 bits (73), Expect = 0.28
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 8/43 (18%)
Query: 3 YVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDD 45
Y+VG G GD + +T+K L ++++ D +L D ++
Sbjct: 3 YLVGAGPGDPELLTLKALRLLQEAD--------VVLYDRLVSP 37
>gnl|CDD|233426 TIGR01469, cobA_cysG_Cterm, uroporphyrin-III C-methyltransferase.
This model represents enzymes, or enzyme domains, with
uroporphyrin-III C-methyltransferase activity. This
enzyme catalyzes the first step committed to the
biosynthesis of either siroheme or cobalamin (vitamin
B12) rather than protoheme (heme). Cobalamin contains
cobalt while siroheme contains iron. Siroheme is a
cofactor for nitrite and sulfite reductases and
therefore plays a role in cysteine biosynthesis; many
members of this family are CysG, siroheme synthase,
with an additional N-terminal domain and with
additional oxidation and iron insertion activities
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Heme, porphyrin, and cobalamin].
Length = 236
Score = 30.7 bits (70), Expect = 0.69
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 3 YVVGLGLGDVKDITVKGLEIVKKCDRV 29
Y+VG G GD + +T+K L ++++ D V
Sbjct: 3 YLVGAGPGDPELLTLKALRLLQEADVV 29
>gnl|CDD|183065 PRK11268, pstA, phosphate transporter permease subunit PtsA;
Provisional.
Length = 295
Score = 30.0 bits (68), Expect = 1.0
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 217 IARVGSETQHIVATSLSN-MTETDMGKPLHSL 247
IAR+ ET ++ T+LSN TDM +P+ +L
Sbjct: 218 IARIAGETAPLLFTALSNQFWSTDMMQPIANL 249
>gnl|CDD|235711 PRK06136, PRK06136, uroporphyrin-III C-methyltransferase;
Reviewed.
Length = 249
Score = 29.8 bits (68), Expect = 1.2
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 8/43 (18%)
Query: 3 YVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDD 45
Y+VG G GD IT+KG+ ++++ D V L DD++
Sbjct: 6 YLVGAGPGDPDLITLKGVRLLEQADVV--------LYDDLVSP 40
>gnl|CDD|185269 PRK15371, PRK15371, effector protein YopJ; Provisional.
Length = 287
Score = 28.9 bits (65), Expect = 2.5
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 170 EPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTKPG 207
E L K YLP F +Q ++L E T P
Sbjct: 206 ENPLPH--DKLDPYLPVTFYKHTQGKKRLNEYLNTNPQ 241
>gnl|CDD|180320 PRK05948, PRK05948, precorrin-2 methyltransferase; Provisional.
Length = 238
Score = 28.8 bits (65), Expect = 2.7
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 2 FYVVGLGLGDVKDITVKGLEIVKKC 26
Y + +G GD + IT+KGL +++
Sbjct: 6 LYGISVGPGDPELITLKGLRLLQSA 30
>gnl|CDD|225725 COG3184, COG3184, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 183
Score = 27.9 bits (62), Expect = 4.6
Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
Query: 23 VKKCDRVYLEAYTSILIDDIIDDMKSFY----GKDII----IADREMVESA 65
+R Y I ++ ++ + +FY GK ++ I RE++++A
Sbjct: 93 RADLEREAALLYAKIFTEEELNAITAFYGSPAGKKLLDKGPILTRELMKAA 143
>gnl|CDD|226287 COG3764, SrtA, Sortase (surface protein transpeptidase) [Cell
envelope biogenesis, outer membrane].
Length = 210
Score = 27.8 bits (62), Expect = 4.9
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 14/73 (19%)
Query: 20 LEIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKDIIIADREMVESASDVILHNADVEDVA 79
L +K D++Y+ + + D+ I+ D V+ D +
Sbjct: 132 LGKLKVGDKIYVTTKNETYV-YKVTDIS------IVDPDD--VDVLDDQ-----KGKAEL 177
Query: 80 LLVVGDPYGATTH 92
L+ PYG+ T
Sbjct: 178 TLITCTPYGSATK 190
>gnl|CDD|212507 cd11648, RsmI, Ribosomal RNA small subunit methyltransferase I,
also known as rRNA (cytidine-2'-O-)-methyltransferase
RsmI. Proteins in this family catalyze the
2-O-methylation of the ribose of cytidine 1402 (C1402)
in 16S rRNA using S-adenosyl-L-methionine (SAM or
Ado-Met) as the methyl donor. RsmI proteins employ the
30S subunit (not the 16S rRNA) as a substrate,
suggesting that the methylation reaction occurs at a
late step during 30S assembly in the cell.
Length = 218
Score = 27.7 bits (63), Expect = 6.0
Identities = 11/30 (36%), Positives = 22/30 (73%)
Query: 3 YVVGLGLGDVKDITVKGLEIVKKCDRVYLE 32
Y+V +G+++DIT++ LE++K+ D + E
Sbjct: 2 YLVATPIGNLEDITLRALEVLKEVDLIACE 31
>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional.
Length = 647
Score = 28.2 bits (63), Expect = 6.3
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 15/61 (24%)
Query: 126 YNFGETVSIPFWTESWKPDSFYDKIVENKSRG------------LHTLC--LLDIQVKEP 171
N+ + FW E K +DK+ + G L+T C +LDI VK P
Sbjct: 14 SNYANSNPESFWDEVAKKYVHWDKMYDKVYSGDEIYPDWFKGGELNT-CYNVLDIHVKNP 72
Query: 172 T 172
Sbjct: 73 L 73
>gnl|CDD|237757 PRK14560, PRK14560, putative RNA-binding protein; Provisional.
Length = 160
Score = 27.1 bits (61), Expect = 6.9
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 39 IDDIIDDMKSFYGKDIIIADREMVESASD 67
+ +I +++K +G DI D
Sbjct: 14 VKEIKEELKEKFGVDIDGKDAVEEVETDK 42
>gnl|CDD|234858 PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase; Provisional.
Length = 343
Score = 27.0 bits (61), Expect = 10.0
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 65 ASDVILHNADVEDV----ALLVVGDPYGA 89
A VI+ D E V ALLVV +PY A
Sbjct: 55 AGAVIVSPDDAEFVPAGNALLVVKNPYLA 83
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.385
Gapped
Lambda K H
0.267 0.0803 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,497,759
Number of extensions: 1273097
Number of successful extensions: 1189
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1164
Number of HSP's successfully gapped: 58
Length of query: 271
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 176
Effective length of database: 6,723,972
Effective search space: 1183419072
Effective search space used: 1183419072
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.0 bits)