RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11146
(271 letters)
>3i4t_A Diphthine synthase; niaid, ssgcid, infectious disease, anaerobic
parasitic protozoan, structural genomics, decode, UW,
SBRI; 2.49A {Entamoeba histolytica}
Length = 292
Score = 280 bits (718), Expect = 3e-95
Identities = 127/268 (47%), Positives = 177/268 (66%), Gaps = 4/268 (1%)
Query: 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKDIIIADRE 60
M Y++GLGL D KDITV+GLE VK CD V+LE YT+IL D+ ++ FYGK +II DR+
Sbjct: 22 MLYIIGLGLYDEKDITVRGLEAVKSCDLVFLEHYTAILQCDV-AKLEEFYGKKVIIGDRD 80
Query: 61 MVESASDVILHNADVEDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAAGC 120
+VE+ +D IL A ++VALLVVGD YGATTH+D+ +R ++ I KV+HNASI+NA GC
Sbjct: 81 LVETEADQILEPAKTKNVALLVVGDVYGATTHSDIFVRCQKMGIEVKVIHNASIMNAIGC 140
Query: 121 CGLQLYNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKT 180
GLQLY FG+TVS+ FW+E W+P S+Y KI N+ +HTL LLDI+VKE + ES+ K
Sbjct: 141 SGLQLYRFGQTVSVCFWSEHWRPSSYYPKIKINRDNNMHTLVLLDIKVKERSEESIIKGR 200
Query: 181 RQYLPPRFMSVSQAAQQLVEITK--TKPGLSTADLAVGIARVGSETQHIVATSLSNMTET 238
+ PPR+M+++Q +QL+E+ K + VG+ARV Q IV + ++
Sbjct: 201 DIFEPPRYMTINQCIEQLLEVEKEQHLGVYDEDTMVVGMARVACADQKIVYGKMKDLLHY 260
Query: 239 DMGKPLHSLIIVG-NIHPVESEFLAQYS 265
D G P+H L+I + E + L +
Sbjct: 261 DFGAPMHCLLIPAPQVDDPELDQLEYFK 288
>2z6r_A Diphthine synthase; methyltransferase, S-adenosyl-L-methionine,
transferase; HET: SAH MES; 1.50A {Pyrococcus horikoshii}
PDB: 2dek_A* 1wng_A* 1vce_A* 2ed3_A* 2e4r_A* 2owg_A*
2ek3_A* 2pcm_A* 2p5c_A* 2hut_A* 2emr_A* 2el3_A* 2el0_A*
2ejk_A* 2eld_A* 2el2_A* 2eka_A* 2eh5_A* 2pcg_A* 2el1_A*
...
Length = 265
Score = 272 bits (696), Expect = 3e-92
Identities = 99/267 (37%), Positives = 148/267 (55%), Gaps = 18/267 (6%)
Query: 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKDIIIADRE 60
+ Y +GLGL D +DITVKGLEI KKCD V+ E YTS++ + ++ GK+I + RE
Sbjct: 2 VLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQRLIGKEIRVLSRE 61
Query: 61 MVESASDVI-LHNADVEDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAAG 119
VE + I L A DVA L GDP ATTH +L +RA+++ + + V+H SI +A G
Sbjct: 62 DVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVG 121
Query: 120 CCGLQLYNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKK 179
GL +Y FG++ ++ + +W P S+YD I EN RGLHTL LDI+ +
Sbjct: 122 ITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAE---------- 171
Query: 180 TRQYLPPRFMSVSQAAQQLVEITK--TKPGLSTADLAVGIARVGSETQHIVATSLSNMTE 237
+M+ ++A + L+++ + L V +AR GS I A + ++
Sbjct: 172 -----KRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIR 226
Query: 238 TDMGKPLHSLIIVGNIHPVESEFLAQY 264
D G P H LI+ G +H VE+E+L +
Sbjct: 227 EDFGDPPHILIVPGKLHIVEAEYLVEI 253
>1wde_A Probable diphthine synthase; structural genomics, conserved
hypothetical protein, riken S genomics/proteomics
initiative, RSGI, transferase; 2.00A {Aeropyrum pernix}
SCOP: c.90.1.1
Length = 294
Score = 258 bits (661), Expect = 2e-86
Identities = 68/277 (24%), Positives = 114/277 (41%), Gaps = 26/277 (9%)
Query: 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDM-KSFYGKDIIIADR 59
+VG G T++ L+ V++ D VY+E+YT + + ++ ++ A R
Sbjct: 9 TLLLVGWGYAP-GMQTLEALDAVRRADVVYVESYTMPGSSWLYKSVVEAAGEARVVEASR 67
Query: 60 EMVESASDVILHNADVEDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASIL-NAA 118
+E S I+ A VA++ GDP ATTH+ L A ++ + + + S + A
Sbjct: 68 RDLEERSREIVSRALDAVVAVVTAGDPMVATTHSSLAAEALEAGVAVRYIPGVSGVQAAR 127
Query: 119 GCCGLQLYNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTK 178
G L Y FG TV++P P S +I N GLHT LLD+ +
Sbjct: 128 GATMLSFYRFGGTVTLPGPWRGVTPISVARRIYLNLCAGLHTTALLDVDER--------- 178
Query: 179 KTRQYLPPRFMSVSQAAQQLVEITK-------TKPGLSTADLAVGIARVGSETQHIVATS 231
+S Q L+E + L+ + A G + + +S
Sbjct: 179 -------GVQLSPGQGVSLLLEADREYAREAGAPALLARLPSVLVEAGAGGGHRVLYWSS 231
Query: 232 LSNMTETDMGKPLHSLIIVGNIHPVESEFLAQYSTQE 268
L ++ D+ ++S++I + VE LA S Q
Sbjct: 232 LERLSTADVEGGVYSIVIPARLSGVEEWLLAAASGQR 268
>1vhv_A Diphthine synthase; structural genomics, transferase; HET: MSE;
1.75A {Archaeoglobus fulgidus} SCOP: c.90.1.1
Length = 268
Score = 256 bits (654), Expect = 1e-85
Identities = 90/267 (33%), Positives = 140/267 (52%), Gaps = 29/267 (10%)
Query: 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKDIIIADRE 60
+ VGLGL DVKDI+VKGLE V++ D VY+E YTS L+ I ++M+ F+GK ++ +R
Sbjct: 14 LLTFVGLGLWDVKDISVKGLEAVREADEVYVEYYTSKLLSSI-EEMEEFFGKRVVELERS 72
Query: 61 MVESASDVILHNADVEDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAA-G 119
+E S ++ A + V LLV GDP ATTH+ + L A + + T+++H ASI A G
Sbjct: 73 DLEENSFRLIERAKSKSVVLLVPGDPMVATTHSAIKLEAERKGVKTRIIHGASISTAVCG 132
Query: 120 CCGLQLYNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKK 179
GL Y FG++ ++ + + + I N+S HTL LD+
Sbjct: 133 LTGLHNYRFGKSATVSWHR----SQTPVNVIKANRSIDAHTLLFLDLH------------ 176
Query: 180 TRQYLPPRFMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATSLSNMTETD 239
P M++ A + L+ AVGIAR GS + + L N+ + D
Sbjct: 177 ------PEPMTIGHAVENLIAEDAQMKD----LYAVGIARAGSGEEVVKCDRLENLKKID 226
Query: 240 MGKPLHSLIIVG-NIHPVESEFLAQYS 265
GKPLH ++++ +H +E E L +++
Sbjct: 227 FGKPLHVMVVLAKTLHFMEFECLREFA 253
>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 232
Score = 54.2 bits (131), Expect = 6e-09
Identities = 24/126 (19%), Positives = 46/126 (36%), Gaps = 20/126 (15%)
Query: 2 FYVVGLGLGDVKDITVKGLEIVKKCDRVY----LEAYTSI-------LIDDIIDDMKSFY 50
VG+G GD + +T++ + +++ + SI ++ + D +
Sbjct: 5 LIGVGVGPGDSELLTLRAVNVLRSVPVICAPRSSSERESIALSIVEDILTERRDGCRILD 64
Query: 51 -----GKDIIIADREMVESASDVILHNADVEDVALLVVGDP--YGATTHTDLVLRARQSN 103
D + +A V D DVA + +GDP Y ++ L R
Sbjct: 65 PVFPMTDDRDELESHWDSAARMVAAELEDGRDVAFITLGDPSIYSTFSY--LQQRIEDMG 122
Query: 104 IPTKVV 109
T++V
Sbjct: 123 FKTEMV 128
>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole,
S-adenosylmethi transferase; HET: SAH; 2.00A
{Chlorobaculum tepidum} PDB: 2e0k_A*
Length = 259
Score = 50.0 bits (120), Expect = 2e-07
Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 20/126 (15%)
Query: 2 FYVVGLGLGDVKDITVKGLEIVKKCDRVY---------------LEAYTSILIDDIIDDM 46
V LG GD ITVK L +++ D +Y L+ +D
Sbjct: 7 IISVSLGPGDPGLITVKALSQLREADVIYYPGTVSASGAVTSVALDILKEFDLDPSKLRG 66
Query: 47 KSFY-GKDIIIADREMVESASDVILHNADVEDVALLVVGDP--YGATTHTDLVLRARQSN 103
+ A+ + + + VA++ VGD Y + ++ RAR+
Sbjct: 67 MLVPMSRSRGAAEASYAANYASMAEEVQAGRRVAVVSVGDGGFYSTASA--IIERARRDG 124
Query: 104 IPTKVV 109
+ +
Sbjct: 125 LDCSMT 130
>2npn_A Putative cobalamin synthesis related protein; COBF, PSI-2, MAD,
struc genomics, SAM, S-adenosylmethionine, MCSG; HET:
MSE SAM; 1.60A {Corynebacterium diphtheriae}
Length = 251
Score = 49.5 bits (118), Expect = 3e-07
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 27/135 (20%)
Query: 2 FYVVGLGLGDVKDITVKGLEIVKKCDRV----------------------YLEAYTSILI 39
YV+G+G G + +T++ + ++ + + +
Sbjct: 5 IYVIGIGTGSPEFLTLQAISGLRHAQAIVALDKGEQKSDLLALRQKIVDTHAPGTPIYAV 64
Query: 40 DD-IIDDMKSFYGKDIIIADREMVESASDVIL-HNADVEDVALLVVGDP--YGATTHTDL 95
D D Y +++ E + I D VA LV GDP Y +T
Sbjct: 65 TDPERDRNPDNYEEEVRRWHAERAHLLASTIRERTPDDGAVAFLVWGDPSLYDSTLRIIE 124
Query: 96 VLRAR-QSNIPTKVV 109
+R + KV+
Sbjct: 125 HMRNLEDLHADVKVI 139
>3nut_A Precorrin-3 methylase; vitamin B12 pathway, cobalamin,
methyltransferase, transfera; HET: SAH; 2.22A
{Rhodobacter capsulatus}
Length = 251
Score = 48.5 bits (116), Expect = 6e-07
Identities = 42/262 (16%), Positives = 89/262 (33%), Gaps = 52/262 (19%)
Query: 3 YVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKDIIIAD-REM 61
V GLG G +T + + + + + + + G + D R
Sbjct: 12 TVAGLGPGREDLVTPEVTAALAEATDI-------VGYIPYVARIAPREGLTLHPTDNRVE 64
Query: 62 VESASDVILHNADVEDVALLVVGDP--YG--ATTHTDLVLRARQSNIPTKVVHNASILNA 117
++ A+ + A+ V ++ GDP + + L + +++ + + A
Sbjct: 65 LDRATHALEMAAEGRRVVVVSSGDPGVFAMASALFEALEAHPEHAGTEIRILPGITAMLA 124
Query: 118 AGC-CGLQLYNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESL 176
A G L + +++ +++ KP +K + + +RG +
Sbjct: 125 AAAAAGAPLGHDFCAINL---SDNLKPFEILEKRLRHAARGDFAMAF------------- 168
Query: 177 TKKTRQYLP---PRFMSVSQAAQQLVEITKTKPGLSTADLAVGIAR-VGSETQHIVATSL 232
Y P R ++ + L E + + AR V + Q I L
Sbjct: 169 ------YNPRSKSRPHQFTRVLEILREECE-------PGRLILFARAVTTPEQAISVVEL 215
Query: 233 SNMTET--DMGKPLHSLIIVGN 252
+ T DM ++++VGN
Sbjct: 216 RDATPEMADM----RTVVLVGN 233
>3nd1_A Precorrin-6A synthase/COBF protein; methyltransferase, deacetylase,
transferase; HET: SAH; 1.50A {Rhodobacter capsulatus}
Length = 275
Score = 44.6 bits (105), Expect = 1e-05
Identities = 27/137 (19%), Positives = 48/137 (35%), Gaps = 30/137 (21%)
Query: 2 FYVVGLGLGDVKDITVKGLEIVKKCDRVY----------LEAYTSILIDDII-------- 43
++G+G G+ + IT + ++ + D + L + +
Sbjct: 24 LSLIGIGTGNPRHITGQAVDAMNAADLILIPLKGADKSDLAGLRRQICAAHLTNPATKVI 83
Query: 44 -------DDMKSFYGKDIIIADREMVESASDVILHNADVE--DVALLVVGDP--YGATTH 92
D Y K + + E+ I + VALLV GDP Y +T
Sbjct: 84 DFALPVRDASNPSYRKGVDDWHDAIAETWLSEITAHVPGLEGRVALLVWGDPSLYDSTLR 143
Query: 93 TDLVLRARQSNIPTKVV 109
L++R + TKV+
Sbjct: 144 IAERLKSRL-PLTTKVI 159
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 4e-05
Identities = 50/309 (16%), Positives = 94/309 (30%), Gaps = 100/309 (32%)
Query: 20 LEIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKDIIIADREMVESASDVILHNADVEDVA 79
E+V K +L Y S L++ + F ++ + + L D+ +A
Sbjct: 58 AELVGK----FL-GYVSSLVEP--SKVGQF--DQVL---NLCLTEFENCYLEGNDIHALA 105
Query: 80 LLVVGDPYGATTHTDLVLR----ARQ-SNIPTKVVHNASILNAAGCCGLQLYN-FG---- 129
++ + T +++ AR + P N+++ A G QL FG
Sbjct: 106 AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGN 165
Query: 130 -ETVSIPFWTE------SWKPDSFYDKIVENKSRGLHTLCL------------LDIQ--V 168
+ ++ E ++ +++ + L L L+I +
Sbjct: 166 TDD----YFEELRDLYQTYHV--LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 169 KEPTLESLTKKTRQYL---P---PRFMSVSQAAQQLV----------EITKTKPGLST-- 210
+ P+ + YL P P + V Q A +V E+ G +
Sbjct: 220 ENPS----NTPDKDYLLSIPISCP-LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 211 ADL--AVGIAR--------------------VGSETQH------IVATSLSNMTETDMGK 242
L AV IA +G + + L + E + G
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV 334
Query: 243 PLHSLIIVG 251
P L I
Sbjct: 335 PSPMLSISN 343
Score = 41.2 bits (96), Expect = 3e-04
Identities = 52/296 (17%), Positives = 75/296 (25%), Gaps = 146/296 (49%)
Query: 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKDIIIADRE 60
M + L V+ + V K + +L A GK + I+
Sbjct: 338 MLSISNLTQEQVQ-------DYVNKTNS-HLPA-----------------GKQVEIS--- 369
Query: 61 MVESASDVILHNADVEDVALLVVGDP---YGATTHTDLVLRAR---------QSNIPT-- 106
L N V V G P YG L L R QS IP
Sbjct: 370 ---------LVNGAKNLV---VSGPPQSLYG------LNLTLRKAKAPSGLDQSRIPFSE 411
Query: 107 -KVVHNASILNAAGCCGLQLYNFGETVSIPF------------------WTESWKPDSFY 147
K+ + L V+ PF S+
Sbjct: 412 RKLKFSNRFL---------------PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDI- 455
Query: 148 DKI-VENKSRGLHTLCLLDIQVKEPTL-ESLTKKTRQYLPPRFMSVSQAAQQLV---EIT 202
+I V T D++V ++ E + V + V T
Sbjct: 456 -QIPVY------DTFDGSDLRVLSGSISERI--------------VDCIIRLPVKWETTT 494
Query: 203 KTK--------PGLSTADLAVGIARVGSETQH---------IVATSLSNMTETDMG 241
+ K PG G + +G T IVA +L + D G
Sbjct: 495 QFKATHILDFGPG--------GASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYG 542
Score = 39.3 bits (91), Expect = 0.001
Identities = 44/274 (16%), Positives = 76/274 (27%), Gaps = 111/274 (40%)
Query: 5 VGLGLGDVKDI-----TVKGLEIVKKCDRVYLEAYT-SILIDDII-DDMKSFY------- 50
G+G D+ + ++ + D + + Y SIL DI+ ++ +
Sbjct: 1629 QGMG----MDLYKTSKAAQ--DVWNRADNHFKDTYGFSIL--DIVINNPVNLTIHFGGEK 1680
Query: 51 GKDI----------IIAD---------REMVESASDVILHNADVED--------VALLVV 83
GK I I D +E+ E ++ ++ AL ++
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF-RSEKGLLSATQFTQPALTLM 1739
Query: 84 GDPYGATTHTDLVLRARQSNIPTKVV---HNASIL--NAAGCCGLQLYNFGETVSIPFWT 138
A L+++ IP H S L AA + + V
Sbjct: 1740 E--KAAFE----DLKSKG-LIPADATFAGH--S-LGEYAALASLADVMSIESLV------ 1783
Query: 139 ESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFM----SVSQA 194
++V RG T Q PR +
Sbjct: 1784 ----------EVV--FYRG---------------------MTMQVAVPRDELGRSNYGMI 1810
Query: 195 AQQLVEITKTKPGLSTADLAVGIARVGSETQHIV 228
A + + S L + RVG T +V
Sbjct: 1811 A---INPGRVAASFSQEALQYVVERVGKRTGWLV 1841
Score = 36.2 bits (83), Expect = 0.012
Identities = 33/226 (14%), Positives = 77/226 (34%), Gaps = 78/226 (34%)
Query: 29 VYLEAYTSILIDDIID--------------DMKSFYGKDIIIADREMVESASDVI--LHN 72
+Y + Y L+ D+I D + + + + +++ L N
Sbjct: 176 LY-QTYHV-LVGDLIKFSAETLSELIRTTLDAEKVFTQGL------------NILEWLEN 221
Query: 73 ADVE-DVALLV---VGDP---------YGAT------THTDLVLRARQSNIPTKVVHNAS 113
D L+ + P Y T T +L +S + H+
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGEL-----RSYLKGATGHSQG 276
Query: 114 ILNAAGCCGL-----QLY-NFGETVSIPFW--TESWK-------PDSFYDKIVENKSRGL 158
++ A + + + +++ F+ ++ P S + +EN + G+
Sbjct: 277 LVTAV-AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN-NEGV 334
Query: 159 HT--LCLLDIQVKEPTLESLTKKTRQYLPPR---FMSVSQAAQQLV 199
+ L + ++ ++ ++ KT +LP +S+ A+ LV
Sbjct: 335 PSPMLSISNLTQEQ--VQDYVNKTNSHLPAGKQVEISLVNGAKNLV 378
>2bb3_A Cobalamin biosynthesis precorrin-6Y methylase (CB; beta,
alpha-beta-alpha sandwich, structural genomics, PSI, P
structure initiative; HET: SAH; 2.27A {Archaeoglobus
fulgidus} SCOP: c.90.1.1
Length = 221
Score = 40.9 bits (96), Expect = 2e-04
Identities = 22/120 (18%), Positives = 43/120 (35%), Gaps = 15/120 (12%)
Query: 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKDIIIADRE 60
M ++VG G T + EI+++ + +Y L ++ I
Sbjct: 23 MIWIVGSGTCR-GQTTERAKEIIERAEVIY--GSRRAL--ELAGV---VDDSRARILRSF 74
Query: 61 MVESASDVILHNADVEDVALLVVGDP--YGATTHTDLVLRARQSNIPTKVVHNASILNAA 118
+ ++ + +VA++ GDP G VLR ++ K+ S + A
Sbjct: 75 KGDEIRRIMEEGRE-REVAVISTGDPMVAGLGR----VLREIAEDVEIKIEPAISSVQVA 129
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 0.001
Identities = 30/201 (14%), Positives = 58/201 (28%), Gaps = 58/201 (28%)
Query: 9 LGDVKDI-TVKGLEIVKKCDRVYLEAYTSILI----DDIIDDMKSFYGKDIIIADRE--M 61
L +V++ + C IL+ + D + + I + +
Sbjct: 250 LLNVQNAKAWNAFNL--SC---------KILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 62 VESASDVILH---NADVEDVALLVV-GDPY-----GATTHTDLVLRA---RQSNIPTKVV 109
+L + +D+ V+ +P + D + + N
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR-DGLATWDNWKHVNCDKLTT 357
Query: 110 HNASILNAAGCCGL------QLYN----FGETVSIP------FWTESWKPDSFYDKIVEN 153
S LN L ++++ F + IP W + D V
Sbjct: 358 IIESSLNV-----LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV----IKSD--VMV 406
Query: 154 KSRGLHTLCLLDIQVKEPTLE 174
LH L++ Q KE T+
Sbjct: 407 VVNKLHKYSLVEKQPKESTIS 427
Score = 36.4 bits (83), Expect = 0.010
Identities = 39/245 (15%), Positives = 75/245 (30%), Gaps = 71/245 (28%)
Query: 23 VKKCDRVYLEAYTSILIDDIIDDMKSFYGKDIIIADREMVESASDVILHNADVED-VALL 81
+K C+ + +++ ++ + I + +S++ L ++ + L
Sbjct: 189 LKNCNS----------PETVLEMLQKLLYQ-IDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 82 VVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNA--AGCCGLQLYNFGET--VSIPFW 137
+ PY + LVL N V NA NA C L T +
Sbjct: 238 LKSKPY---ENCLLVLL----N-----VQNAKAWNAFNLSCKILLT-----TRFKQV--- 277
Query: 138 TESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTR---QYLPPRFMSVSQA 194
T+ + +++ S L + L K Q LP
Sbjct: 278 TDFLSAATTTHISLDHHSMTLT---------PDEVKSLLLKYLDCRPQDLPR-------- 320
Query: 195 AQQLVEITKTKP---GLSTADLAVGIAR------VGSET-QHIVATSLSNMTETDMGKPL 244
E+ T P + + G+A V + I+ +SL+ + + K
Sbjct: 321 -----EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 245 HSLII 249
L +
Sbjct: 376 DRLSV 380
Score = 34.8 bits (79), Expect = 0.033
Identities = 33/234 (14%), Positives = 64/234 (27%), Gaps = 80/234 (34%)
Query: 27 DRVYLEAYTSILIDDIID-----DMKSFYGKDIIIADREMVESASDVI------LHNADV 75
V + T+I I+ ++ + + + + + + ++ + +DV
Sbjct: 348 KHVNCDKLTTI-IESSLNVLEPAEYRKMF-DRLSVF-PPSAHIPTILLSLIWFDVIKSDV 404
Query: 76 EDVA------LLVVGDPYGATT--HTDLVLRARQSNIPTKVVHNASILNAAGCCGLQLYN 127
V LV P +T + L + +H SI++ YN
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIP-SIYLELKVKLENEYALHR-SIVDH--------YN 454
Query: 128 F-----GETVSIP------FW-----------TESWK--PDSFYD-KIVENKSRGLHTLC 162
+ + P + E F D + +E K R T
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514
Query: 163 ---------LLD-------IQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVE 200
L I +P E L +LP + + L+
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP-------KIEENLIC 561
>2zvb_A Precorrin-3 C17-methyltransferase; plasmid, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SAH; 2.00A {Thermus
thermophilus} PDB: 2zvc_A*
Length = 295
Score = 38.2 bits (89), Expect = 0.002
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 21/96 (21%)
Query: 3 YVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKDIIIAD---- 58
++VG+G GD+ +T + E ++ + V Y+ ++++M GK+++
Sbjct: 5 FLVGMGPGDLPGLTQRAREALEGAEVVI--GYS--TYVKLLEEMGLLAGKEVVRKGMTEE 60
Query: 59 ----REMVESASDVILHNADVEDVALLVVGDP--YG 88
E +E A + VAL+ GDP YG
Sbjct: 61 LDRAEEALERA-------LSGQRVALVSGGDPGIYG 89
>1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase,
cobalamin biosynth methyltransferase; HET: SAH; 2.40A
{Bacillus megaterium} SCOP: c.90.1.1 PDB: 2cbf_A*
Length = 285
Score = 34.5 bits (80), Expect = 0.022
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 25/118 (21%)
Query: 3 YVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILI-DDIIDDMKSFYGKDIIIADREM 61
Y++G G GD ITVKGL+++++ D V Y L+ D+I K E+
Sbjct: 24 YIIGAGPGDPDLITVKGLKLLQQADVV---LYADSLVSQDLIAKSK---------PGAEV 71
Query: 62 VESAS-------DVILHNADV-EDVALLVVGDP--YGATTHTDLVLRARQSNIPTKVV 109
+++A +L + V + GDP YGA ++L+ + ++V
Sbjct: 72 LKTAGMHLEEMVGTMLDRMREGKMVVRVHTGDPAMYGAIMEQMVLLKRE--GVDIEIV 127
>4e16_A Precorrin-4 C(11)-methyltransferase; structural genomics, center
for structural genomics of infec diseases, csgid; 2.49A
{Clostridium difficile}
Length = 253
Score = 34.4 bits (80), Expect = 0.026
Identities = 28/118 (23%), Positives = 45/118 (38%), Gaps = 25/118 (21%)
Query: 3 YVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILI-DDIIDDMKSFYGKDIIIADREM 61
+ VG G GD + IT+KG +++ D V Y L+ ++++ K D ++
Sbjct: 8 HFVGAGPGDKELITLKGYKLLSNADVV---IYAGSLVNPELLEYCK---------EDCQI 55
Query: 62 VESAS-------DVILHNADV-EDVALLVVGDP--YGATTHTDLVLRARQSNIPTKVV 109
SA DV+ + + V L GD YG+ L NI
Sbjct: 56 HNSAHMDLQEIIDVMREGIENNKSVVRLQTGDFSIYGSIREQVEDLNKL--NIDYDCT 111
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A
{Rhodobacter capsulatus} PDB: 3nei_A
Length = 264
Score = 33.6 bits (78), Expect = 0.043
Identities = 27/118 (22%), Positives = 43/118 (36%), Gaps = 25/118 (21%)
Query: 3 YVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILI-DDIIDDMKSFYGKDIIIADREM 61
+ +G G G IT++G +++ C Y L+ + ++ ++
Sbjct: 7 HFIGAGPGAADLITIRGRDLIASCPVC---LYAGSLVPEALLAHCP---------PGAKI 54
Query: 62 VESAS-------DVILHNADV-EDVALLVVGDP--YGATTHTDLVLRARQSNIPTKVV 109
V +A D I +DVA L GD + A LRA NIP V
Sbjct: 55 VNTAPMSLDAIIDTIAEAHAAGQDVARLHSGDLSIWSAMGEQLRRLRAL--NIPYDVT 110
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif,
SAM, NAD, phosphoserine,
transferase/oxidoreductase/lyase complex; HET: SEP PGE
SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11
c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Length = 457
Score = 31.4 bits (72), Expect = 0.28
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 3 YVVGLGLGDVKDITVKGLEIVKKCDRV 29
+VG G GD +T+KGL+ +++ D V
Sbjct: 219 VLVGAGPGDAGLLTLKGLQQIQQADIV 245
>2ybo_A Methyltransferase; SUMT, NIRE, heme D1 biosynthesis; HET: SAH;
2.00A {Pseudomonas aeruginosa} PDB: 2ybq_A*
Length = 294
Score = 31.0 bits (71), Expect = 0.33
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 3 YVVGLGLGDVKDITVKGLEIVKKCDRV 29
+VG G GD +T++ ++++ + V
Sbjct: 28 ALVGAGPGDPGLLTLRAWALLQQAEVV 54
>1va0_A Uroporphyrin-III C-methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 1.97A
{Thermus thermophilus} SCOP: c.90.1.1 PDB: 1v9a_A
Length = 239
Score = 30.9 bits (71), Expect = 0.35
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 3 YVVGLGLGDVKDITVKGLEIVKKCDRV 29
Y+VG G GD + +T+K ++K+ V
Sbjct: 4 YLVGAGPGDPELLTLKAYRLLKEAPVV 30
>1ve2_A Uroporphyrin-III C-methyltransferase; heme, biosynthesis,
structural genomics, NPPSFA; 1.80A {Thermus
thermophilus} SCOP: c.90.1.1
Length = 235
Score = 30.5 bits (70), Expect = 0.41
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 3 YVVGLGLGDVKDITVKGLEIVKKCDRV 29
Y+VG G G + +T+K L +++ + V
Sbjct: 6 YLVGAGFGGPEHLTLKALRVLEVAEVV 32
>3rrx_A EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,(alpha/beta)6
sheet, hydrolase; 1.90A {Pseudoalteromonas SP} PDB:
3usz_A 3f93_A 3f94_A 3ut0_A
Length = 822
Score = 31.2 bits (71), Expect = 0.41
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 51 GKDIIIADREMVESASDVILHNADVE-----DVALLVVGDPYGATTHTDLVLRARQS 102
I + V A I + E DVA++V+G+ A D+ L Q
Sbjct: 450 ATSIFSGLQSQVTKAGGKITLSESGEYTSKPDVAIVVIGEEPYAEWFGDIELLEFQH 506
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis,
cobalamin, SAM, SAH, uroporphyrin methyltransferase;
HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP:
c.90.1.1
Length = 280
Score = 30.6 bits (70), Expect = 0.45
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 3 YVVGLGLGDVKDITVKGLEIVKKCD 27
++VG G GD +T+ +++ D
Sbjct: 18 WLVGAGPGDPGLLTLHAANALRQAD 42
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical
protein, JW0472, structural genomics, NPPSFA; 2.25A
{Escherichia coli}
Length = 113
Score = 27.8 bits (62), Expect = 1.8
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 8/45 (17%)
Query: 183 YLPPRFMSVSQAAQQL-------VEITKTKPGLSTADLAVGIARV 220
YL P + +++ A+ L + L T ++A +A+V
Sbjct: 19 YLEPLDLKINELAELLHVHRNSVSALINNNRKL-TTEMAFRLAKV 62
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2,
protein struct initiative, northeast structural genomics
consortium, NESG; 1.63A {Escherichia coli} SCOP:
a.35.1.3 PDB: 2icp_A
Length = 94
Score = 27.2 bits (61), Expect = 1.9
Identities = 8/47 (17%), Positives = 21/47 (44%), Gaps = 8/47 (17%)
Query: 181 RQYLPPRFMSVSQAAQQL-------VEITKTKPGLSTADLAVGIARV 220
++ L +S+ + A+ + + K L T ++A+ ++ V
Sbjct: 14 QESLDELNVSLREFARAMEIAPSTASRLLTGKAAL-TPEMAIKLSVV 59
>3cec_A Putative antidote protein of plasmid maintenance; structural
genomics, joint center for structural genomics, J
protein structure initiative; HET: MSE; 1.60A {Nostoc
punctiforme}
Length = 104
Score = 27.3 bits (61), Expect = 2.3
Identities = 7/47 (14%), Positives = 18/47 (38%), Gaps = 8/47 (17%)
Query: 181 RQYLPPRFMSVSQAAQQL-------VEITKTKPGLSTADLAVGIARV 220
L ++ + A+ L E+ + + T D+A+ + +
Sbjct: 24 ADILDDLDINTANFAEILGVSNQTIQEVINGQRSI-TVDIAIRLGKA 69
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element
functions, DNA binding P; 2.00A {Coxiella burnetii}
Length = 104
Score = 26.6 bits (59), Expect = 3.7
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 8/45 (17%)
Query: 183 YLPPRFMSVSQAAQQL-------VEITKTKPGLSTADLAVGIARV 220
MS +Q A+ L I + TAD A+ +A+
Sbjct: 22 LGFLDKMSANQLAKHLAIPTNRVTAILNGARSI-TADTALRLAKF 65
>3dmg_A Probable ribosomal RNA small subunit methyltransf;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Length = 381
Score = 26.5 bits (58), Expect = 9.6
Identities = 4/33 (12%), Positives = 10/33 (30%)
Query: 59 REMVESASDVILHNADVEDVALLVVGDPYGATT 91
R + D++ + L + G +
Sbjct: 28 RGYRDPVHDLLQKTVEPFGERALDLNPGVGWGS 60
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.385
Gapped
Lambda K H
0.267 0.0847 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,043,033
Number of extensions: 242237
Number of successful extensions: 588
Number of sequences better than 10.0: 1
Number of HSP's gapped: 565
Number of HSP's successfully gapped: 42
Length of query: 271
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 179
Effective length of database: 4,133,061
Effective search space: 739817919
Effective search space used: 739817919
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.1 bits)