RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11146
(271 letters)
>d2deka1 c.90.1.1 (A:1-265) Diphthine synthase, DphB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 265
Score = 207 bits (527), Expect = 4e-67
Identities = 98/267 (36%), Positives = 150/267 (56%), Gaps = 18/267 (6%)
Query: 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKDIIIADRE 60
+ Y +GLGL D +DITVKGLEI KKCD V+ E YTS++ + ++ GK+I + RE
Sbjct: 2 VLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSRE 61
Query: 61 MVES-ASDVILHNADVEDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAAG 119
VE +++L A DVA L GDP ATTH +L +RA+++ + + V+H SI +A G
Sbjct: 62 DVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVG 121
Query: 120 CCGLQLYNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKK 179
GL +Y FG++ ++ + +W P S+YD I EN RGLHTL LDI+ ++
Sbjct: 122 ITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEK--------- 172
Query: 180 TRQYLPPRFMSVSQAAQQLVEITKT--KPGLSTADLAVGIARVGSETQHIVATSLSNMTE 237
+M+ ++A + L+++ + L V +AR GS I A + ++
Sbjct: 173 ------RMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIR 226
Query: 238 TDMGKPLHSLIIVGNIHPVESEFLAQY 264
D G P H LI+ G +H VE+E+L +
Sbjct: 227 EDFGDPPHILIVPGKLHIVEAEYLVEI 253
>d1wdea_ c.90.1.1 (A:) Diphthine synthase, DphB {Aeropyrum pernix
[TaxId: 56636]}
Length = 289
Score = 183 bits (466), Expect = 1e-57
Identities = 68/277 (24%), Positives = 114/277 (41%), Gaps = 26/277 (9%)
Query: 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDII-DDMKSFYGKDIIIADR 59
+VG G T++ L+ V++ D VY+E+YT + +++ ++ A R
Sbjct: 4 TLLLVGWGYAP-GMQTLEALDAVRRADVVYVESYTMPGSSWLYKSVVEAAGEARVVEASR 62
Query: 60 EMVESASDVILHNADVEDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNAS-ILNAA 118
+E S I+ A VA++ GDP ATTH+ L A ++ + + + S + A
Sbjct: 63 RDLEERSREIVSRALDAVVAVVTAGDPMVATTHSSLAAEALEAGVAVRYIPGVSGVQAAR 122
Query: 119 GCCGLQLYNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTK 178
G L Y FG TV++P P S +I N GLHT LLD+ +
Sbjct: 123 GATMLSFYRFGGTVTLPGPWRGVTPISVARRIYLNLCAGLHTTALLDVDER--------- 173
Query: 179 KTRQYLPPRFMSVSQAAQQLVEITK-------TKPGLSTADLAVGIARVGSETQHIVATS 231
+S Q L+E + L+ + A G + + +S
Sbjct: 174 -------GVQLSPGQGVSLLLEADREYAREAGAPALLARLPSVLVEAGAGGGHRVLYWSS 226
Query: 232 LSNMTETDMGKPLHSLIIVGNIHPVESEFLAQYSTQE 268
L ++ D+ ++S++I + VE LA S Q
Sbjct: 227 LERLSTADVEGGVYSIVIPARLSGVEEWLLAAASGQR 263
>d1vhva_ c.90.1.1 (A:) Diphthine synthase, DphB {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 251
Score = 178 bits (452), Expect = 6e-56
Identities = 89/267 (33%), Positives = 140/267 (52%), Gaps = 29/267 (10%)
Query: 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKDIIIADRE 60
+ VGLGL DVKDI+VKGLE V++ D VY+E YTS L+ I++M+ F+GK ++ +R
Sbjct: 2 LLTFVGLGLWDVKDISVKGLEAVREADEVYVEYYTSKLLSS-IEEMEEFFGKRVVELERS 60
Query: 61 MVESASDVILHNADVEDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILN-AAG 119
+E S ++ A + V LLV GDP ATTH+ + L A + + T+++H ASI G
Sbjct: 61 DLEENSFRLIERAKSKSVVLLVPGDPMVATTHSAIKLEAERKGVKTRIIHGASISTAVCG 120
Query: 120 CCGLQLYNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKK 179
GL Y FG++ ++ + + + I N+S HTL LD+
Sbjct: 121 LTGLHNYRFGKSATVSWHR----SQTPVNVIKANRSIDAHTLLFLDLH------------ 164
Query: 180 TRQYLPPRFMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATSLSNMTETD 239
P M++ A + L+ + AVGIAR GS + + L N+ + D
Sbjct: 165 ------PEPMTIGHAVENLIA----EDAQMKDLYAVGIARAGSGEEVVKCDRLENLKKID 214
Query: 240 MGKPLHSLIIVGN-IHPVESEFLAQYS 265
GKPLH ++++ +H +E E L +++
Sbjct: 215 FGKPLHVMVVLAKTLHFMEFECLREFA 241
>d1ve2a1 c.90.1.1 (A:1-235) Uroporphyrin-III C-methyltransferase
(SUMT, UROM, CobA) {Thermus thermophilus [TaxId: 274]}
Length = 235
Score = 69.9 bits (170), Expect = 8e-15
Identities = 47/252 (18%), Positives = 80/252 (31%), Gaps = 37/252 (14%)
Query: 3 YVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKDIIIADREMV 62
Y+VG G G + +T+K L +++ + V + + + GK+
Sbjct: 6 YLVGAGFGGPEHLTLKALRVLEVAEVVLHDRLVHPGVLALAKGELVPVGKEGYGGKTPQE 65
Query: 63 ESASDVILHNADVEDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNA-AGCC 121
+ +I + VA L GDP + L R++ IP +VV +
Sbjct: 66 AITARLIALAREGRVVARLKGGDPMVFGRGGEEALALRRAGIPFEVVPGVTSAVGALSAL 125
Query: 122 GLQLYNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTR 181
GL L + G S T LHTL L E L ++
Sbjct: 126 GLPLTHRGLARSFAVATGHDPALPLPRADTLVLLMPLHTLGGLK--------ERLLERFP 177
Query: 182 QYLPPRFMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATSLSNMTETDMG 241
P +ARVG + + + ++ G
Sbjct: 178 PETP----------------------------LALLARVGWPGEAVRLGRVEDLPGLGEG 209
Query: 242 KPLHSLIIVGNI 253
P +L++VG +
Sbjct: 210 LPSPALLVVGKV 221
>d1pjqa2 c.90.1.1 (A:216-457) Siroheme synthase CysG, domains 4 and
5 {Salmonella typhimurium [TaxId: 90371]}
Length = 242
Score = 66.6 bits (161), Expect = 1e-13
Identities = 39/252 (15%), Positives = 72/252 (28%), Gaps = 27/252 (10%)
Query: 3 YVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKDIIIADREMV 62
+VG G GD +T+KGL+ +++ D V Y ++ DDI++ ++ D + V
Sbjct: 4 VLVGAGPGDAGLLTLKGLQQIQQADIV---VYDRLVSDDIMNLVR---------RDADRV 51
Query: 63 ESASDVILHNADVEDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAAGCCG 122
H E++ ++LR Q +
Sbjct: 52 FVGKRAGYHCVPQEEIN--------------QILLREAQKGKRVVRLKGGDPFIFGRGGE 97
Query: 123 LQLYNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQ 182
+ + + + + T L +
Sbjct: 98 ELETLCHAGIPFSVVPGITAASGCSAYSGIPLTHRDYAQSVRLVTGHLKTGGELDWENLA 157
Query: 183 YLPPRFMSVSQAAQQLVEITKTKPGLSTADLAVGIAR-VGSETQHIVATSLSNMTETDMG 241
+ Q K AD+ V + S Q +V L+ + E
Sbjct: 158 AEKQTLVFYMGLNQAATIQEKLIAFGMQADMPVALVENGTSVKQRVVHGVLTQLGELAQQ 217
Query: 242 KPLHSLIIVGNI 253
+LIIVG +
Sbjct: 218 VESPALIIVGRV 229
>d1s4da_ c.90.1.1 (A:) Uroporphyrin-III C-methyltransferase (SUMT,
UROM, CobA) {Pseudomonas denitrificans [TaxId: 43306]}
Length = 265
Score = 65.7 bits (159), Expect = 3e-13
Identities = 32/258 (12%), Positives = 78/258 (30%), Gaps = 34/258 (13%)
Query: 3 YVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDII--DDMKSFYGKDIIIADRE 60
++VG G GD +T+ +++ D + +A + + + F GK +
Sbjct: 13 WLVGAGPGDPGLLTLHAANALRQADVIVHDALVNEDCLKLARPGAVLEFAGKRGGKPSPK 72
Query: 61 MVESASDVILHNADVEDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNA-AG 119
+ + ++ V L GDP+ + L + +P ++V +
Sbjct: 73 QRDISLRLVELARAGNRVLRLKGGDPFVFGRGGEEALTLVEHQVPFRIVPGITAGIGGLA 132
Query: 120 CCGLQLYNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKK 179
G+ + + ++ F T D + +
Sbjct: 133 YAGIPVTHREVNHAVTFLTGHDSSGLVPD---------------------RINWQGIASG 171
Query: 180 TR-QYLPPRFMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGS-ETQHIVATSLSNMTE 237
+ + + L+ + + D V + Q ++ T+L+
Sbjct: 172 SPVIVMYMAMKHIGAITANLIAGGR------SPDEPVAFVCNAATPQQAVLETTLARAEA 225
Query: 238 TDMGKPLHS--LIIVGNI 253
L +++VG +
Sbjct: 226 DVAAAGLEPPAIVVVGEV 243
>d1cbfa_ c.90.1.1 (A:) Cobalt precorrin-4 methyltransferase CbiF
{Bacillus megaterium [TaxId: 1404]}
Length = 239
Score = 65.0 bits (157), Expect = 4e-13
Identities = 35/254 (13%), Positives = 85/254 (33%), Gaps = 34/254 (13%)
Query: 3 YVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKDIIIADREMV 62
Y++G G GD ITVKGL+++++ D V Y L+ + + + A +
Sbjct: 12 YIIGAGPGDPDLITVKGLKLLQQADVV---LYADSLVSQDLIAKSKPGAEVLKTAGMHLE 68
Query: 63 ESASDVILHNADVEDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNA-AGCC 121
E ++ + + V + GDP + ++ ++ + ++V + + A A
Sbjct: 69 EMVGTMLDRMREGKMVVRVHTGDPAMYGAIMEQMVLLKREGVDIEIVPGVTSVFAAAAAA 128
Query: 122 GLQLYNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTR 181
+L T ++ + + + + ++ T+ L + + +
Sbjct: 129 EAELTIPDLTQTVILTRAEGRTPVPEFEKLTDLAKHKCTIALFLSSTLTKKV--MKEFIN 186
Query: 182 QYLPPRFMSVSQAAQQLVEITKTKPGLSTADLAVGIAR-VGSETQHIVATSLSNMTETDM 240
D V + + IV T++ ++ +
Sbjct: 187 AGWSE-------------------------DTPVVVVYKATWPDEKIVRTTVKDLDDAMR 221
Query: 241 GKPLHS--LIIVGN 252
+ +I+ G
Sbjct: 222 TNGIRKQAMILAGW 235
>d1va0a1 c.90.1.1 (A:2-226) Hypothetical protein TTHA0667 {Thermus
thermophilus [TaxId: 274]}
Length = 225
Score = 59.6 bits (143), Expect = 3e-11
Identities = 33/251 (13%), Positives = 73/251 (29%), Gaps = 33/251 (13%)
Query: 3 YVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKDIIIADREMV 62
Y+VG G GD + +T+K ++K+ V + + + K + GK+ ++++
Sbjct: 4 YLVGAGPGDPELLTLKAYRLLKEAPVVLYDRLVDERVLALAPGEKVYVGKEEGESEKQEE 63
Query: 63 ESASDVILHNADVEDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAAGCCG 122
+ A V L +++ R V S+L +
Sbjct: 64 IHRLLLRHARAHPFVVRLKGGDPMVFGRGGEEVLFLLRHGVPVEVVPGVTSLLASGLPLT 123
Query: 123 LQLYNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQ 182
+ G + + P L +
Sbjct: 124 HRGLAHGFA----AVSGVLEGG------------------------GYPDLRPFARVPTL 155
Query: 183 YLPPRFMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATSLSNMTETDMGK 242
+ A++L+ G + + + R + + V L + E +
Sbjct: 156 VVLMGVGRRVWIAKELLR-----LGRDPREPTLFVERASTPKERRVHARLEEVAEGKVEV 210
Query: 243 PLHSLIIVGNI 253
+L I+G +
Sbjct: 211 RPPALWILGEV 221
>d2bb3a1 c.90.1.1 (A:1-195) Precorrin-6y methylase CbiE
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 195
Score = 45.2 bits (106), Expect = 2e-06
Identities = 20/121 (16%), Positives = 37/121 (30%), Gaps = 9/121 (7%)
Query: 1 MFYVVGLGLGDVKDITVKGLEIVKKCDRVYLEAYTSILIDDIIDDMKSFYGKDIIIADRE 60
M ++VG G T + EI+++ + I ++ R
Sbjct: 1 MIWIVGSGTCR-GQTTERAKEIIERAE--------VIYGSRRALELAGVVDDSRARILRS 51
Query: 61 MVESASDVILHNADVEDVALLVVGDPYGATTHTDLVLRARQSNIPTKVVHNASILNAAGC 120
I+ +VA++ GDP A L A I + ++ + A
Sbjct: 52 FKGDEIRRIMEEGREREVAVISTGDPMVAGLGRVLREIAEDVEIKIEPAISSVQVALARL 111
Query: 121 C 121
Sbjct: 112 K 112
>d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic
enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}
Length = 257
Score = 27.8 bits (62), Expect = 1.3
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 12/65 (18%)
Query: 30 YLEAYTSILIDDIIDDMKSFYGKD--------IIIADREMVESASDVILHNADVEDVALL 81
+E + I+ + YG I I DR + + +L + + +
Sbjct: 81 DIERFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIAT----MLQSWPESVIKAI 136
Query: 82 VVGDP 86
VV D
Sbjct: 137 VVTDG 141
>d1wyza1 c.90.1.1 (A:2-234) Putative methytransferase BT4190
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 233
Score = 26.4 bits (57), Expect = 3.7
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 3 YVVGLGLGDV---KDITVKGLEIVKKCDRVYLE 32
Y++ + LGD + + EI++ +E
Sbjct: 5 YLLPVTLGDTPLEQVLPSYNTEIIRGIRHFIVE 37
>d2r31a1 d.381.1.1 (A:6-238) ATP12 ATPase {Paracoccus denitrificans
[TaxId: 266]}
Length = 233
Score = 25.7 bits (56), Expect = 5.3
Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 5/100 (5%)
Query: 141 WKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVE 200
WK F+ + +K G + L + ++ P + L T ++ A Q V
Sbjct: 2 WKARRFWASVGIHKEEGGWAVLLDERPLRTPGKQPLRLPTEAL--ALAIAEEWQAVQEVI 59
Query: 201 ITKTKPGLSTADLAVGIARVGSETQHIVATSLSNMTETDM 240
P +A+ A I +V + + A L + TD+
Sbjct: 60 DPNAMPLTRSANSA--IEKVAPQFDAVAAM-LGDYGGTDL 96
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.385
Gapped
Lambda K H
0.267 0.0584 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 954,483
Number of extensions: 42298
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 16
Length of query: 271
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 187
Effective length of database: 1,254,276
Effective search space: 234549612
Effective search space used: 234549612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.1 bits)