BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy11147
         (279 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ELB|A Chain A, Human Ctp: Phosphoethanolamine Cytidylyltransferase In
           Complex With Cmp
          Length = 341

 Score =  226 bits (575), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 115/224 (51%), Positives = 153/224 (68%), Gaps = 13/224 (5%)

Query: 18  RTMEVQRTAGVSTTDLVGRMLSMTSQHNAS-DVARPYERKA---------RSPYTTCSSQ 67
           R  E +RT GVSTTDLVGR L +T  H++S + +  Y   A         R+P+T  S Q
Sbjct: 119 RYRECKRTQGVSTTDLVGRXLLVTKAHHSSQEXSSEYREYADSFGKCPGGRNPWTGVS-Q 177

Query: 68  FLLTTEKIRQFSEGRQPKPTDRIVYVDGAYDLFHPGHLDFLEKAKQAGD--YLIVGIHPD 125
           FL T++KI QF+ G++P+P + ++YV GA+DLFH GH+DFLEK  +  +  Y+I G+H D
Sbjct: 178 FLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHFD 237

Query: 126 HVVAWYKGYGYPIMNLHERVLSVLACKYVDEVVIGAPYTITADMLSQLRVDIVCRGLAAV 185
             V  YKG  YPI NLHER LSVLAC+YV EVVIGAPY +TA++LS  +VD+VC G   +
Sbjct: 238 QEVNHYKGKNYPIXNLHERTLSVLACRYVSEVVIGAPYAVTAELLSHFKVDLVCHGKTEI 297

Query: 186 LPDETGRDPYSEAKKLGKFKLIDSGNTTTTEKIVDRIVFHRLEF 229
           +PD  G DPY E K+ G F+ IDSG+  TT+ IV RI+ +RLE+
Sbjct: 298 IPDRDGSDPYQEPKRRGIFRQIDSGSNLTTDLIVQRIITNRLEY 341



 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 70/134 (52%), Gaps = 3/134 (2%)

Query: 91  VYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLA 150
           V+ DG YD  H GH + L +A+  GDYLIVG+H D  +A +K  G P+    ER   V A
Sbjct: 10  VWCDGCYDXVHYGHSNQLRQARAXGDYLIVGVHTDEEIAKHK--GPPVFTQEERYKXVQA 67

Query: 151 CKYVDEVVIGAPYTITADMLSQLRVDIVCRGLAAVLPDETGRDPYSEAKKLGKFKLIDSG 210
            K+VDEVV  APY  T + L +   D    G    L  + GRD Y E K+ G+++     
Sbjct: 68  IKWVDEVVPAAPYVTTLETLDKYNCDFCVHGNDITLTVD-GRDTYEEVKQAGRYRECKRT 126

Query: 211 NTTTTEKIVDRIVF 224
              +T  +V R + 
Sbjct: 127 QGVSTTDLVGRXLL 140


>pdb|3HL4|A Chain A, Crystal Structure Of A Mammalian Ctp:phosphocholine
           Cytidylyltransferase With Cdp-Choline
 pdb|3HL4|B Chain B, Crystal Structure Of A Mammalian Ctp:phosphocholine
           Cytidylyltransferase With Cdp-Choline
          Length = 236

 Score = 87.4 bits (215), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 79/150 (52%), Gaps = 9/150 (6%)

Query: 91  VYVDGAYDLFHPGHLDFLEKAKQ--AGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSV 148
           VY DG +DLFH GH   L +AK      YLIVG+  D +   +KG+   +MN +ER  +V
Sbjct: 79  VYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFT--VMNENERYDAV 136

Query: 149 LACKYVDEVVIGAPYTITADMLSQLRVDIVCRGLAAVLPDETG--RDPYSEAKKLGKFKL 206
             C+YVDEVV  AP+T+T + L++ R+D V       +P  +    D Y   K+ G F  
Sbjct: 137 QHCRYVDEVVRNAPWTLTPEFLAEHRIDFVAHDD---IPYSSAGSDDVYKHIKEAGMFAP 193

Query: 207 IDSGNTTTTEKIVDRIVFHRLEFERRNFEK 236
                  +T  I+ RIV     + RRN ++
Sbjct: 194 TQRTEGISTSDIITRIVRDYDVYARRNLQR 223


>pdb|1COZ|A Chain A, Ctp:glycerol-3-Phosphate Cytidylyltransferase From
           Bacillus Subtilis
 pdb|1COZ|B Chain B, Ctp:glycerol-3-Phosphate Cytidylyltransferase From
           Bacillus Subtilis
 pdb|1N1D|A Chain A, Glycerol-3-phosphate Cytidylyltransferase Complexed With
           Cdp-glycerol
 pdb|1N1D|B Chain B, Glycerol-3-phosphate Cytidylyltransferase Complexed With
           Cdp-glycerol
 pdb|1N1D|C Chain C, Glycerol-3-phosphate Cytidylyltransferase Complexed With
           Cdp-glycerol
 pdb|1N1D|D Chain D, Glycerol-3-phosphate Cytidylyltransferase Complexed With
           Cdp-glycerol
          Length = 129

 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 95  GAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACKYV 154
           G +DL H GH+  LE+AKQ GDYL+V I  D      +   Y   +   R L +   +YV
Sbjct: 8   GTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYH--SYEHRKLILETIRYV 65

Query: 155 DEVV 158
           DEV+
Sbjct: 66  DEVI 69


>pdb|2B7L|A Chain A, Crystal Structure Of Ctp:glycerol-3-Phosphate
           Cytidylyltransferase From Staphylococcus Aureus
 pdb|2B7L|B Chain B, Crystal Structure Of Ctp:glycerol-3-Phosphate
           Cytidylyltransferase From Staphylococcus Aureus
 pdb|2B7L|C Chain C, Crystal Structure Of Ctp:glycerol-3-Phosphate
           Cytidylyltransferase From Staphylococcus Aureus
 pdb|2B7L|D Chain D, Crystal Structure Of Ctp:glycerol-3-Phosphate
           Cytidylyltransferase From Staphylococcus Aureus
          Length = 132

 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 6/89 (6%)

Query: 95  GAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHV--VAWYKGYGYPIMNLHERVLSVLACK 152
           G YDL H GH++ L +A++ GDYLIV +  D    +   K Y     +  +R + + + +
Sbjct: 8   GTYDLLHYGHIELLRRAREMGDYLIVALSTDEFNQIKHKKSY----YDYEQRKMMLESIR 63

Query: 153 YVDEVVIGAPYTITADMLSQLRVDIVCRG 181
           YVD V+    +    D + +  VD+   G
Sbjct: 64  YVDLVIPEKGWGQKEDDVEKFDVDVFVMG 92


>pdb|3GLV|A Chain A, Crystal Structure Of The Lipopolysaccharide Core
           Biosynthesis Protein From Thermoplasma Volcanium Gss1
 pdb|3GLV|B Chain B, Crystal Structure Of The Lipopolysaccharide Core
           Biosynthesis Protein From Thermoplasma Volcanium Gss1
          Length = 143

 Score = 40.0 bits (92), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 9/94 (9%)

Query: 91  VYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLA 150
           V   G +D+ H GH+ +L+++K+ GD L+V +  D   A   G   PI + + R+  +  
Sbjct: 5   VMATGVFDILHLGHIHYLKESKKLGDELVVVVARDS-TARNNGK-IPIFDENSRLALISE 62

Query: 151 CKYVDEVVIGAPYTITADMLS---QLRVDIVCRG 181
            K VD  ++G       DM+    +++ DI+  G
Sbjct: 63  LKVVDRAILGHE----GDMMKTVIEVKPDIITLG 92


>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
           Isoform-Specific Camp-Gating In Hcn Channels
 pdb|3U0Z|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
           Isoform-Specific Camp-Gating In Hcn Channels
          Length = 210

 Score = 31.2 bits (69), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 50/123 (40%), Gaps = 11/123 (8%)

Query: 164 TITADMLSQLRVDIV---CRGLAAVLPDETGRDPYSEAKKLGK--FKLIDSGNTTTTEKI 218
            I +++   LR +IV   CR L A +P     DP      L K  F++   G+    E  
Sbjct: 55  NILSELNDPLREEIVNFNCRKLVATMPLFANADPNFVTAMLSKLRFEVFQPGDYIIREGA 114

Query: 219 VDRIVFHRLEFERRNFEKENKEMKLI------ELIESSKTGATGMVGATTYATRHTLKAT 272
           V + ++           K +KEMKL       E+   +K   T  V A TY   ++L   
Sbjct: 115 VGKKMYFIQHGVAGVITKSSKEMKLTDGSYFGEICLLTKGRRTASVRADTYCRLYSLSVD 174

Query: 273 NCN 275
           N N
Sbjct: 175 NFN 177


>pdb|4F3R|A Chain A, Structure Of Phosphopantetheine Adenylyltransferase
           (Cbu_0288) From Coxiella Burnetii
 pdb|4F3R|B Chain B, Structure Of Phosphopantetheine Adenylyltransferase
           (Cbu_0288) From Coxiella Burnetii
 pdb|4F3R|C Chain C, Structure Of Phosphopantetheine Adenylyltransferase
           (Cbu_0288) From Coxiella Burnetii
          Length = 162

 Score = 30.8 bits (68), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 95  GAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACKYV 154
           G +D    GH+D +E+A    + +IV   P            P + L ERV +++A    
Sbjct: 12  GTFDPLTNGHVDIIERALPLFNKIIVACAP-------TSRKDPHLKLEERV-NLIADVLT 63

Query: 155 DEVVIGAPYT-ITADMLSQLRVDIVCRGLAAV 185
           DE V   P T +  D     + + + RGL AV
Sbjct: 64  DERVEVLPLTGLLVDFAKTHQANFILRGLRAV 95


>pdb|4F3V|A Chain A, Crystal Structure Of N-Terminal Domain Of Ecca1 Atpase
           From Esx-1 Secretion System Of Mycobacterium
           Tuberculosis
 pdb|4F3V|B Chain B, Crystal Structure Of N-Terminal Domain Of Ecca1 Atpase
           From Esx-1 Secretion System Of Mycobacterium
           Tuberculosis
          Length = 282

 Score = 30.8 bits (68), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 8/99 (8%)

Query: 182 LAAVLPDETGRDPYSEAKKLGKFKLIDSGNTTTTEKIV--------DRIVFHRLEFERRN 233
           LA++        P SEA+ L  F  I + + +  +  +        DR+   R  + RRN
Sbjct: 7   LASLFESAVSMLPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRN 66

Query: 234 FEKENKEMKLIELIESSKTGATGMVGATTYATRHTLKAT 272
           F + +  +++     +++    G+ G  TY     L  T
Sbjct: 67  FGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAIT 105


>pdb|1F9A|A Chain A, Crystal Structure Analysis Of Nmn Adenylyltransferase From
           Methanococcus Jannaschii
 pdb|1F9A|B Chain B, Crystal Structure Analysis Of Nmn Adenylyltransferase From
           Methanococcus Jannaschii
 pdb|1F9A|C Chain C, Crystal Structure Analysis Of Nmn Adenylyltransferase From
           Methanococcus Jannaschii
 pdb|1F9A|D Chain D, Crystal Structure Analysis Of Nmn Adenylyltransferase From
           Methanococcus Jannaschii
 pdb|1F9A|E Chain E, Crystal Structure Analysis Of Nmn Adenylyltransferase From
           Methanococcus Jannaschii
 pdb|1F9A|F Chain F, Crystal Structure Analysis Of Nmn Adenylyltransferase From
           Methanococcus Jannaschii
          Length = 168

 Score = 30.4 bits (67), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 92  YVDGAYDLFHPGHLDFLEKAKQAGDYLIVGI 122
           ++ G +  FH GHL+ ++K  +  D +I+GI
Sbjct: 4   FIIGRFQPFHKGHLEVIKKIAEEVDEIIIGI 34


>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
 pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
 pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
          Length = 393

 Score = 30.0 bits (66), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 95  GAYDLFHPGHLDFLEKAK--QAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACK 152
           G  ++ + GH DF+      Q  +Y++ G     V+ W K  G P++ L     SV++  
Sbjct: 300 GTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVA 359

Query: 153 YVDEVVIGAPYTITA 167
             +   +G  Y + A
Sbjct: 360 VANGSSLGPEYNVFA 374


>pdb|2LCU|A Chain A, Nmr Structure Of Bc28.1
          Length = 223

 Score = 28.9 bits (63), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 110 KAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACKYVDEVVIGAPYTITADM 169
           KA + G  +I  I  D    W+  +G+ +  L++  L  LA   V+E+V         D 
Sbjct: 133 KASEDGTKVIQNIKDDRTNTWFVAHGFKVAELNDVTLEKLAT-VVNELVSHKDMIYINDA 191

Query: 170 LSQ 172
           + Q
Sbjct: 192 MKQ 194


>pdb|2QBY|A Chain A, Crystal Structure Of A Heterodimer Of Cdc6ORC1 INITIATORS
           Bound To Origin Dna (From S. Solfataricus)
          Length = 386

 Score = 28.5 bits (62), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 136 YPIMNLHERVLSVLACKYVDEVVIGAPYTITADMLSQLRVDIVCRGLA 183
           + +  LH++ L      Y++   I  PY + AD+L  L V +   GL+
Sbjct: 64  FVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLS 111


>pdb|2EJC|A Chain A, Crystal Structure Of Pantoate--Beta-Alanine Ligase (Panc)
           From Thermotoga Maritima
          Length = 280

 Score = 28.1 bits (61), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 71  TTEKIRQFSEG-RQPKPTDRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGI 122
           T E++++FSE  R+ K T   V   G     H GHL  + +A+   D ++V I
Sbjct: 6   TIEEMKKFSEEMREKKKTIGFVPTMG---YLHEGHLSLVRRARAENDVVVVSI 55


>pdb|3OTW|A Chain A, Structural And Functional Studies Of Helicobacter Pylori
           Wild-Type And Mutated Proteins Phosphopantetheine
           Adenylyltransferase
 pdb|3OTW|B Chain B, Structural And Functional Studies Of Helicobacter Pylori
           Wild-Type And Mutated Proteins Phosphopantetheine
           Adenylyltransferase
 pdb|3OTW|C Chain C, Structural And Functional Studies Of Helicobacter Pylori
           Wild-Type And Mutated Proteins Phosphopantetheine
           Adenylyltransferase
 pdb|3OTW|D Chain D, Structural And Functional Studies Of Helicobacter Pylori
           Wild-Type And Mutated Proteins Phosphopantetheine
           Adenylyltransferase
 pdb|3OTW|E Chain E, Structural And Functional Studies Of Helicobacter Pylori
           Wild-Type And Mutated Proteins Phosphopantetheine
           Adenylyltransferase
 pdb|3OTW|F Chain F, Structural And Functional Studies Of Helicobacter Pylori
           Wild-Type And Mutated Proteins Phosphopantetheine
           Adenylyltransferase
          Length = 163

 Score = 27.7 bits (60), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 8/92 (8%)

Query: 95  GAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSV-LACKY 153
           G +D    GH+D + ++ +  + LIV +        +     P+ +L ER+  + LA K 
Sbjct: 15  GTFDPVTNGHIDIIHRSSELFEKLIVAV-------AHSSAKNPMFSLDERLKMIQLATKS 67

Query: 154 VDEVVIGAPYTITADMLSQLRVDIVCRGLAAV 185
              V   A   + A++  +    ++ RGL  V
Sbjct: 68  FKNVECVAFEGLLANLAKEYHCKVLVRGLRVV 99


>pdb|1E3W|A Chain A, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
           With Nadh And 3-Keto Butyrate
          Length = 261

 Score = 27.7 bits (60), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 28/55 (50%)

Query: 177 IVCRGLAAVLPDETGRDPYSEAKKLGKFKLIDSGNTTTTEKIVDRIVFHRLEFER 231
           +V +G  AVL D    +  +EAKKLG   +    N T+ +++   +   + +F R
Sbjct: 30  LVGQGATAVLLDVPNSEGETEAKKLGGNCIFAPANVTSEKEVQAALTLAKEKFGR 84


>pdb|1E6W|A Chain A, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
           With Nadh And Estradiol
 pdb|1E6W|B Chain B, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
           With Nadh And Estradiol
 pdb|1E6W|C Chain C, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
           With Nadh And Estradiol
 pdb|1E6W|D Chain D, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
           With Nadh And Estradiol
          Length = 260

 Score = 27.7 bits (60), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 28/55 (50%)

Query: 177 IVCRGLAAVLPDETGRDPYSEAKKLGKFKLIDSGNTTTTEKIVDRIVFHRLEFER 231
           +V +G  AVL D    +  +EAKKLG   +    N T+ +++   +   + +F R
Sbjct: 29  LVGQGATAVLLDVPNSEGETEAKKLGGNCIFAPANVTSEKEVQAALTLAKEKFGR 83


>pdb|1E3S|A Chain A, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
           With Nadh
 pdb|1E3S|B Chain B, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
           With Nadh
 pdb|1E3S|C Chain C, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
           With Nadh
 pdb|1E3S|D Chain D, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
           With Nadh
 pdb|1E3W|B Chain B, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
           With Nadh And 3-Keto Butyrate
 pdb|1E3W|C Chain C, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
           With Nadh And 3-Keto Butyrate
 pdb|1E3W|D Chain D, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
           With Nadh And 3-Keto Butyrate
          Length = 261

 Score = 27.7 bits (60), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 28/55 (50%)

Query: 177 IVCRGLAAVLPDETGRDPYSEAKKLGKFKLIDSGNTTTTEKIVDRIVFHRLEFER 231
           +V +G  AVL D    +  +EAKKLG   +    N T+ +++   +   + +F R
Sbjct: 30  LVGQGATAVLLDVPNSEGETEAKKLGGNCIFAPANVTSEKEVQAALTLAKEKFGR 84


>pdb|2W9M|A Chain A, Structure Of Family X Dna Polymerase From Deinococcus
           Radiodurans
 pdb|2W9M|B Chain B, Structure Of Family X Dna Polymerase From Deinococcus
           Radiodurans
          Length = 578

 Score = 27.3 bits (59), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 70  LTTEKIR-QFSEGRQPKPTDRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIH 123
           LT E++R Q  E R+ +     +      D+   G LDF +      DY++V +H
Sbjct: 374 LTIERLREQLKEIRELQRAGLPIVAGSEVDILDDGSLDFPDDVLGELDYVVVSVH 428


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,733,040
Number of Sequences: 62578
Number of extensions: 327199
Number of successful extensions: 794
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 775
Number of HSP's gapped (non-prelim): 24
length of query: 279
length of database: 14,973,337
effective HSP length: 98
effective length of query: 181
effective length of database: 8,840,693
effective search space: 1600165433
effective search space used: 1600165433
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)