Query psy11147
Match_columns 279
No_of_seqs 272 out of 1782
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 19:12:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11147.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11147hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2803|consensus 100.0 5.8E-67 1.3E-71 478.9 14.6 241 5-248 107-356 (358)
2 PLN02406 ethanolamine-phosphat 100.0 1.7E-59 3.6E-64 451.1 22.8 241 6-247 157-412 (418)
3 PTZ00308 ethanolamine-phosphat 100.0 8.9E-57 1.9E-61 426.9 23.4 239 6-246 111-351 (353)
4 cd02173 ECT CTP:phosphoethanol 100.0 1.6E-38 3.4E-43 270.0 18.3 150 88-237 2-152 (152)
5 PLN02413 choline-phosphate cyt 100.0 1.9E-36 4.2E-41 277.0 17.6 156 84-241 23-181 (294)
6 cd02174 CCT CTP:phosphocholine 100.0 1.3E-35 2.8E-40 251.6 18.0 145 89-236 3-149 (150)
7 KOG2804|consensus 100.0 6.9E-32 1.5E-36 246.8 11.2 148 88-238 63-212 (348)
8 KOG2803|consensus 100.0 1.8E-31 3.9E-36 245.3 11.4 175 89-276 9-185 (358)
9 COG0615 TagD Cytidylyltransfer 100.0 1.9E-30 4.1E-35 216.2 12.4 132 89-224 2-139 (140)
10 PTZ00308 ethanolamine-phosphat 100.0 7.6E-29 1.7E-33 235.9 17.7 137 85-224 8-144 (353)
11 PLN02406 ethanolamine-phosphat 100.0 1.4E-28 3.1E-33 237.2 16.8 135 87-224 52-190 (418)
12 cd02172 RfaE_N N-terminal doma 100.0 9.8E-28 2.1E-32 201.9 16.5 136 87-226 3-143 (144)
13 TIGR02199 rfaE_dom_II rfaE bif 99.9 3.3E-27 7.2E-32 198.6 15.2 133 87-223 10-143 (144)
14 cd02170 cytidylyltransferase c 99.9 7.1E-26 1.5E-30 187.5 16.1 133 88-224 1-135 (136)
15 TIGR01518 g3p_cytidyltrns glyc 99.9 3.6E-25 7.8E-30 181.4 13.8 124 91-222 1-125 (125)
16 cd02171 G3P_Cytidylyltransfera 99.9 3.5E-24 7.5E-29 175.9 15.8 128 88-224 1-128 (129)
17 PRK11316 bifunctional heptose 99.9 1.4E-23 3E-28 205.5 16.8 136 85-223 337-472 (473)
18 COG2870 RfaE ADP-heptose synth 99.9 1E-23 2.2E-28 200.4 13.7 135 87-224 331-465 (467)
19 cd02064 FAD_synthetase_N FAD s 99.8 3.6E-19 7.9E-24 154.6 14.8 133 91-225 2-158 (180)
20 PRK05627 bifunctional riboflav 99.8 1.3E-18 2.7E-23 163.1 16.6 134 90-225 15-173 (305)
21 PRK07143 hypothetical protein; 99.8 1.8E-18 3.9E-23 160.2 17.2 134 88-224 15-161 (279)
22 PRK00777 phosphopantetheine ad 99.8 1.5E-18 3.2E-23 147.7 10.4 131 89-228 2-148 (153)
23 PRK00168 coaD phosphopantethei 99.7 7.3E-17 1.6E-21 137.8 12.1 131 88-225 1-138 (159)
24 PRK01170 phosphopantetheine ad 99.7 5.6E-17 1.2E-21 152.6 11.9 130 90-228 2-145 (322)
25 cd02039 cytidylyltransferase_l 99.7 2.5E-16 5.4E-21 128.9 12.3 127 90-221 1-143 (143)
26 PF06574 FAD_syn: FAD syntheta 99.7 8.1E-17 1.7E-21 137.6 9.0 129 87-217 4-157 (157)
27 TIGR00083 ribF riboflavin kina 99.7 3E-16 6.6E-21 146.0 13.1 133 91-225 1-156 (288)
28 PLN02388 phosphopantetheine ad 99.7 1.3E-15 2.8E-20 132.4 12.3 137 84-227 15-169 (177)
29 TIGR01527 arch_NMN_Atrans nico 99.6 5.3E-15 1.1E-19 127.5 14.2 145 91-250 2-163 (165)
30 PF01467 CTP_transf_2: Cytidyl 99.6 2.4E-16 5.2E-21 129.8 4.0 126 92-221 1-157 (157)
31 PRK13964 coaD phosphopantethei 99.6 5.6E-15 1.2E-19 124.1 11.5 128 88-222 1-136 (140)
32 COG0196 RibF FAD synthase [Coe 99.6 1.7E-14 3.6E-19 135.1 14.6 137 88-226 15-174 (304)
33 cd02163 PPAT Phosphopantethein 99.6 6.5E-15 1.4E-19 125.0 10.4 128 90-225 1-136 (153)
34 cd02164 PPAT_CoAS phosphopante 99.6 5.5E-15 1.2E-19 124.5 9.0 124 91-221 2-143 (143)
35 COG0669 CoaD Phosphopantethein 99.6 7.8E-15 1.7E-19 124.2 9.8 123 88-222 2-136 (159)
36 TIGR00125 cyt_tran_rel cytidyl 99.6 1.1E-14 2.5E-19 105.5 7.2 65 90-156 1-65 (66)
37 TIGR01510 coaD_prev_kdtB pante 99.5 4.7E-13 1E-17 113.8 13.2 129 90-225 1-136 (155)
38 cd02166 NMNAT_Archaea Nicotina 99.5 2E-13 4.4E-18 117.1 10.9 136 91-240 2-155 (163)
39 COG1019 Predicted nucleotidylt 99.5 3.7E-13 8E-18 113.4 10.3 130 88-225 5-149 (158)
40 cd02169 Citrate_lyase_ligase C 99.4 2.7E-12 5.8E-17 120.2 14.9 129 87-225 113-280 (297)
41 smart00764 Citrate_ly_lig Citr 99.4 1.5E-11 3.2E-16 107.6 14.5 122 94-224 5-164 (182)
42 cd02168 NMNAT_Nudix Nicotinami 99.4 1.5E-12 3.3E-17 113.7 8.0 150 91-250 2-174 (181)
43 PRK01153 nicotinamide-nucleoti 99.3 1E-10 2.2E-15 101.6 13.0 148 90-250 2-166 (174)
44 PRK00071 nadD nicotinic acid m 99.3 1.8E-10 3.8E-15 101.8 14.6 94 88-185 4-112 (203)
45 cd02167 NMNAT_NadR Nicotinamid 99.2 1.4E-10 2.9E-15 99.3 13.2 128 90-227 1-151 (158)
46 PRK05379 bifunctional nicotina 99.2 9.4E-11 2E-15 111.5 13.5 149 87-246 5-176 (340)
47 cd02165 NMNAT Nicotinamide/nic 99.2 3.6E-10 7.8E-15 98.8 13.2 91 90-185 1-106 (192)
48 PRK08887 nicotinic acid mononu 99.1 8.9E-10 1.9E-14 95.6 12.8 130 88-225 2-149 (174)
49 PRK08099 bifunctional DNA-bind 99.1 7E-10 1.5E-14 107.8 12.9 137 83-227 47-208 (399)
50 PRK13793 nicotinamide-nucleoti 99.0 8.6E-10 1.9E-14 97.5 9.4 159 89-253 5-178 (196)
51 PRK07152 nadD putative nicotin 99.0 3.5E-09 7.5E-14 100.7 12.3 134 88-225 1-168 (342)
52 TIGR00482 nicotinate (nicotina 99.0 3.7E-09 8.1E-14 92.7 11.1 89 93-185 2-105 (193)
53 COG1057 NadD Nicotinic acid mo 99.0 5.4E-09 1.2E-13 92.6 11.9 95 87-185 2-112 (197)
54 cd02156 nt_trans nucleotidyl t 99.0 8.4E-10 1.8E-14 87.5 5.8 57 91-151 2-58 (105)
55 PRK13670 hypothetical protein; 98.9 4.1E-09 8.8E-14 102.2 9.9 91 88-183 1-103 (388)
56 TIGR01526 nadR_NMN_Atrans nico 98.9 2.1E-08 4.5E-13 95.0 13.7 68 88-159 1-70 (325)
57 PRK13671 hypothetical protein; 98.8 1.3E-08 2.9E-13 95.3 9.7 86 93-184 5-103 (298)
58 PRK06973 nicotinic acid mononu 98.8 9.2E-08 2E-12 87.3 13.8 57 88-150 22-80 (243)
59 KOG3351|consensus 98.7 3.1E-08 6.7E-13 89.8 8.2 129 87-222 141-284 (293)
60 TIGR00124 cit_ly_ligase [citra 98.7 7.1E-08 1.5E-12 91.8 8.2 127 86-224 137-308 (332)
61 cd09286 NMNAT_Eukarya Nicotina 98.6 3.7E-07 8.1E-12 82.3 10.1 67 90-160 2-75 (225)
62 PLN02945 nicotinamide-nucleoti 98.5 8.3E-07 1.8E-11 80.5 11.4 73 84-158 18-94 (236)
63 PRK00380 panC pantoate--beta-a 98.5 4.5E-07 9.7E-12 84.5 8.7 107 87-195 21-155 (281)
64 COG1056 NadR Nicotinamide mono 98.4 4.8E-07 1E-11 78.5 5.9 148 87-247 2-166 (172)
65 cd00560 PanC Pantoate-beta-ala 98.3 1.2E-06 2.6E-11 81.5 7.4 100 91-195 27-156 (277)
66 KOG2804|consensus 98.2 1.8E-07 3.9E-12 86.9 -0.4 34 6-39 165-198 (348)
67 PLN02413 choline-phosphate cyt 98.1 9.8E-07 2.1E-11 81.9 0.8 35 5-39 130-164 (294)
68 PF05636 HIGH_NTase1: HIGH Nuc 98.1 5.7E-06 1.2E-10 80.4 6.2 92 88-184 1-104 (388)
69 COG1323 Predicted nucleotidylt 98.0 2.4E-05 5.3E-10 75.0 8.5 90 89-184 2-104 (358)
70 TIGR00018 panC pantoate--beta- 97.9 3.1E-05 6.7E-10 72.3 7.7 66 91-160 27-93 (282)
71 PLN02660 pantoate--beta-alanin 97.9 3.4E-05 7.4E-10 72.0 7.4 66 91-160 26-92 (284)
72 cd02173 ECT CTP:phosphoethanol 97.8 4.2E-06 9.2E-11 71.2 0.4 35 5-39 105-139 (152)
73 PF08218 Citrate_ly_lig: Citra 97.8 0.00029 6.2E-09 61.5 10.6 117 96-225 7-165 (182)
74 cd02174 CCT CTP:phosphocholine 97.6 1.6E-05 3.5E-10 67.6 0.8 37 6-42 104-140 (150)
75 COG3053 CitC Citrate lyase syn 96.5 0.0091 2E-07 56.1 7.7 65 85-159 142-208 (352)
76 PF02569 Pantoate_ligase: Pant 96.1 0.014 3E-07 54.6 6.2 71 87-160 21-93 (280)
77 PRK13477 bifunctional pantoate 95.8 0.02 4.4E-07 57.7 6.4 67 89-160 21-91 (512)
78 TIGR00339 sopT ATP sulphurylas 95.1 0.12 2.6E-06 50.4 9.3 94 86-186 181-291 (383)
79 COG0414 PanC Panthothenate syn 94.4 0.11 2.4E-06 48.5 6.5 68 86-159 20-92 (285)
80 KOG3042|consensus 91.8 0.42 9E-06 43.4 5.9 82 73-158 10-93 (283)
81 cd00517 ATPS ATP-sulfurylase. 88.8 2.9 6.2E-05 40.5 9.3 93 86-185 154-263 (353)
82 PRK04149 sat sulfate adenylylt 84.5 4.2 9E-05 39.9 7.9 93 86-185 184-291 (391)
83 PLN02341 pfkB-type carbohydrat 83.1 0.38 8.3E-06 47.9 0.1 29 87-115 413-441 (470)
84 COG2046 MET3 ATP sulfurylase ( 79.8 4.3 9.3E-05 39.6 5.9 95 85-186 180-289 (397)
85 PF01747 ATP-sulfurylase: ATP- 77.9 7.3 0.00016 35.1 6.5 93 87-186 19-127 (215)
86 PRK05537 bifunctional sulfate 75.7 11 0.00025 38.6 8.0 94 86-186 184-292 (568)
87 KOG3199|consensus 68.7 19 0.00042 32.6 6.8 72 89-164 9-86 (234)
88 COG0159 TrpA Tryptophan syntha 46.4 74 0.0016 29.7 6.9 64 91-171 97-164 (265)
89 PRK13111 trpA tryptophan synth 44.3 1.1E+02 0.0023 28.3 7.6 72 91-178 92-169 (258)
90 PRK13030 2-oxoacid ferredoxin 35.5 1.5E+02 0.0033 33.4 8.2 76 87-164 486-564 (1159)
91 CHL00200 trpA tryptophan synth 32.6 1.3E+02 0.0027 27.9 6.2 63 91-170 94-160 (263)
92 PLN02591 tryptophan synthase 32.5 1.6E+02 0.0034 27.1 6.7 58 91-164 81-142 (250)
93 COG4231 Indolepyruvate ferredo 31.6 1.5E+02 0.0033 31.1 7.0 99 78-180 436-551 (640)
94 TIGR00262 trpA tryptophan synt 28.7 1.7E+02 0.0036 26.8 6.3 59 89-164 89-151 (256)
95 PRK13029 2-oxoacid ferredoxin 28.3 2.8E+02 0.006 31.5 8.7 78 86-165 512-592 (1186)
96 cd02812 PcrB_like PcrB_like pr 26.7 2.6E+02 0.0055 25.3 6.9 33 88-123 149-183 (219)
97 PRK09193 indolepyruvate ferred 26.5 2.6E+02 0.0056 31.6 8.2 77 86-164 498-577 (1165)
98 PF02684 LpxB: Lipid-A-disacch 25.6 1.7E+02 0.0037 28.5 6.0 70 95-182 89-160 (373)
99 PRK15452 putative protease; Pr 24.6 7.1E+02 0.015 24.8 12.5 119 87-220 23-151 (443)
100 PF04007 DUF354: Protein of un 23.8 3.6E+02 0.0078 25.9 7.7 27 97-123 5-35 (335)
101 COG0352 ThiE Thiamine monophos 23.5 1.2E+02 0.0025 27.3 4.1 51 97-163 82-134 (211)
102 cd01715 ETF_alpha The electron 22.9 4.5E+02 0.0097 21.9 9.6 72 99-185 12-94 (168)
103 PRK05198 2-dehydro-3-deoxyphos 22.4 83 0.0018 29.4 3.0 60 94-155 185-261 (264)
104 PF09587 PGA_cap: Bacterial ca 21.8 1.9E+02 0.004 26.0 5.1 49 106-162 175-225 (250)
105 COG0826 Collagenase and relate 21.6 7.3E+02 0.016 23.9 11.0 116 88-222 27-156 (347)
106 COG1533 SplB DNA repair photol 21.1 3E+02 0.0064 26.0 6.5 59 102-162 129-191 (297)
No 1
>KOG2803|consensus
Probab=100.00 E-value=5.8e-67 Score=478.89 Aligned_cols=241 Identities=54% Similarity=0.826 Sum_probs=222.4
Q ss_pred CCCCCCCCCCCCCCeeeeccCCCcchhhHHHHHHhhccCCCCCCCC---ccc------cccCCCCCcccccccccchhhh
Q psy11147 5 PPRPPLIRPWVPTRTMEVQRTAGVSTTDLVGRMLSMTSQHNASDVA---RPY------ERKARSPYTTCSSQFLLTTEKI 75 (279)
Q Consensus 5 ~~~~~~~~~~~~gr~~~vkRT~gVSTTdivgRmL~~~~~~~~~~~~---~~~------~~~~~~~~~~v~~~fl~t~~~i 75 (279)
.+.|.|..+|+|||||+||||+||||||||||||+.++.|+..... .++ +..+.+||++| |+|++|+++|
T Consensus 107 ~G~D~Y~~vK~agrykevKRT~GVSTTelvgRmll~~~~~~~~~~~~~~~e~~~~~g~~~~~~sp~t~~-s~F~~tt~~i 185 (358)
T KOG2803|consen 107 DGLDCYRLVKAAGRYKEVKRTEGVSTTELVGRMLLKKRNHHSDEVSSSQRELSFSSGTDDDGLSPWTRV-SVFLPTTQKI 185 (358)
T ss_pred CCccHHHHHHHhcchheeeeccCcchhhhhhHhhhhccCCCccccchhhhhhhhccccCCcccCCccce-eeeeecCccc
Confidence 4789999999999999999999999999999999999998832111 111 67789999999 9999999999
Q ss_pred hhcccCCCCCCCCeEEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhcCCcc
Q psy11147 76 RQFSEGRQPKPTDRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACKYVD 155 (279)
Q Consensus 76 ~~fs~~~~~~~~~~iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~k~VD 155 (279)
+||+.|+.|+|++++||++|.|||||.||+++|++|+.+||||||||+.|+.++.+||.++||||+.||+++|++|||||
T Consensus 186 ~~~~~G~~p~p~~kvVYvdGaFDLFH~GHl~~Le~ak~lgdyLIvGI~~D~~vneykgs~~PiMnl~ER~LsvlackyVd 265 (358)
T KOG2803|consen 186 IQFSNGREPKPTDKVVYVDGAFDLFHAGHLDFLEKAKRLGDYLIVGIHTDQTVNEYKGSNYPIMNLHERVLSVLACKYVD 265 (358)
T ss_pred eEeecCCCCCCCCcEEEEcCchhhhccchHHHHHHHHhccCceEEEeecCcchhhhccCCCccchHHHHHHHHhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChHHHHHhcCCcEEEEcCCCCCCCCCCCChhHHHHhCCeEEEeCCCCCCCHHHHHHHHHHhhhhhhhhhhh
Q psy11147 156 EVVIGAPYTITADMLSQLRVDIVCRGLAAVLPDETGRDPYSEAKKLGKFKLIDSGNTTTTEKIVDRIVFHRLEFERRNFE 235 (279)
Q Consensus 156 ~Vvi~~p~~~~~e~i~~~~id~vV~G~d~~~~~~~~~d~~~~~k~~G~~~~i~~~~~ISSt~I~~rI~~~r~~y~~Rn~~ 235 (279)
+|++++||..+.++|+.++++.|++|.-..+ ....+||..++..|+|..+++...+||+.|++||+.||++|++||+|
T Consensus 266 eVvvGaP~~v~s~~i~~~~~~~v~~g~~~~~--~~~~~py~~~k~~~i~~~~~~~~dltte~Iv~RIis~r~~Ye~Rn~k 343 (358)
T KOG2803|consen 266 EVVVGAPYEVTSEFIKLFNIDKVAHGTIPDF--RDPSDPYADPKRRGIFEEADSGSDLTTELIVERIISNRQAYEARNQK 343 (358)
T ss_pred eEEEcCchhccHHHHHhcCceEEEEeccccc--cCccCccccchhhcchhhcCCcccccHHHHHHHHHHHHHHHHHHhHH
Confidence 9999999999999999999999999993222 23467999999999999999998999999999999999999999999
Q ss_pred hhHHHHHHHHHHH
Q psy11147 236 KENKEMKLIELIE 248 (279)
Q Consensus 236 K~~ke~~~~~~~~ 248 (279)
|+.||..++++..
T Consensus 344 k~~k~~~~~~~~~ 356 (358)
T KOG2803|consen 344 KEGKEAPLNEAQH 356 (358)
T ss_pred hhhcccchhhhhc
Confidence 9999999988764
No 2
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=100.00 E-value=1.7e-59 Score=451.07 Aligned_cols=241 Identities=41% Similarity=0.689 Sum_probs=217.9
Q ss_pred CCCCCCCCCCCCCeeeeccCCCcchhhHHHHHHhhccCCCCCCCC---c---cc-------cccCCCCCcccccccccch
Q psy11147 6 PRPPLIRPWVPTRTMEVQRTAGVSTTDLVGRMLSMTSQHNASDVA---R---PY-------ERKARSPYTTCSSQFLLTT 72 (279)
Q Consensus 6 ~~~~~~~~~~~gr~~~vkRT~gVSTTdivgRmL~~~~~~~~~~~~---~---~~-------~~~~~~~~~~v~~~fl~t~ 72 (279)
+.|.|..+|.+|||+++|||+||||||||||||+++++|+..... . .+ +..+..+++++ ++|++|+
T Consensus 157 g~d~y~~~k~~Gr~~~i~rt~GvSTTdIv~Ril~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~t~ 235 (418)
T PLN02406 157 GTDAYALAKKAGRYKQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHSQFEDGGSGSGTRV-SHFLPTS 235 (418)
T ss_pred chHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHhhhccccccccchhhhhhhhccccccccccCCCCCCCc-ccccccH
Confidence 458899999999999999999999999999999999999743111 0 01 12233456777 9999999
Q ss_pred hhhhhcccCCCCCCCCeEEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhcC
Q psy11147 73 EKIRQFSEGRQPKPTDRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACK 152 (279)
Q Consensus 73 ~~i~~fs~~~~~~~~~~iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~k 152 (279)
++|.||++|..|++++++||++|+||+||.||+++|++|+++||+|||||++|+.++.+||.++|||+++||+++|++|+
T Consensus 236 ~~i~qf~~g~~p~~~~~iVyv~G~FDlfH~GHi~~L~~Ak~lGd~LIVGV~sD~~v~~~KG~~~Pi~~~~ER~~~v~ack 315 (418)
T PLN02406 236 RRIVQFSNGKGPGPDARIVYIDGAFDLFHAGHVEILRLARALGDFLLVGIHTDQTVSAHRGAHRPIMNLHERSLSVLACR 315 (418)
T ss_pred HHHHHHhccCCCCCCCeEEEECCeeccCCHHHHHHHHHHHHhCCEEEEEEeccHHHHHhcCCCCCCCCHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred CccEEEEcCCCCChHHHHHhcCCcEEEEcCCCCCCC--CCCCChhHHHHhCCeEEEeCCCCCCCHHHHHHHHHHhhhhhh
Q psy11147 153 YVDEVVIGAPYTITADMLSQLRVDIVCRGLAAVLPD--ETGRDPYSEAKKLGKFKLIDSGNTTTTEKIVDRIVFHRLEFE 230 (279)
Q Consensus 153 ~VD~Vvi~~p~~~~~e~i~~~~id~vV~G~d~~~~~--~~~~d~~~~~k~~G~~~~i~~~~~ISSt~I~~rI~~~r~~y~ 230 (279)
|||+||+++||..+.++|++++||+||+|.++.... .++.|+|.+++.+|+|..+++++++|||+|++||+++|+.|+
T Consensus 316 ~VD~VVi~ap~~~~~~~i~~~~~d~vvhG~~~~~~~~~~~~~D~Y~v~k~~G~~~~i~~~~~iSTt~II~RI~~~~~~y~ 395 (418)
T PLN02406 316 YVDEVIIGAPWEVSKDMITTFNISLVVHGTVAENNDFLKGEDDPYAVPKSMGIFQVLESPLDITTSTIIRRIVANHEAYQ 395 (418)
T ss_pred cccEEEeCCCCCCCHHHHHHhCCCEEEECCcCCCccccCCCCcchHHHhcCceEEEeCCCCCCcHHHHHHHHHHhHHHHH
Confidence 999999999999999999999999999998764322 234789999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHH
Q psy11147 231 RRNFEKENKEMKLIELI 247 (279)
Q Consensus 231 ~Rn~~K~~ke~~~~~~~ 247 (279)
+||.+|++||.++|++.
T Consensus 396 ~Rn~~K~~ke~~~~~~~ 412 (418)
T PLN02406 396 KRNEKKAESEKRYYESK 412 (418)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999999875
No 3
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=100.00 E-value=8.9e-57 Score=426.88 Aligned_cols=239 Identities=50% Similarity=0.776 Sum_probs=217.4
Q ss_pred CCCCCCCCCCCCCeeeeccCCCcchhhHHHHHHhhccCCCCCCC-CccccccCCCCCcccccccccchhhhhhcccCCCC
Q psy11147 6 PRPPLIRPWVPTRTMEVQRTAGVSTTDLVGRMLSMTSQHNASDV-ARPYERKARSPYTTCSSQFLLTTEKIRQFSEGRQP 84 (279)
Q Consensus 6 ~~~~~~~~~~~gr~~~vkRT~gVSTTdivgRmL~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~fl~t~~~i~~fs~~~~~ 84 (279)
+.|.|..+|++|||++|+||+||||||||||||+++++|+.... ...+ ..+.++|++. ++|++++++|.+|+.+..|
T Consensus 111 g~~~~~~lk~~G~~~~v~rt~g~STt~ii~ril~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 188 (353)
T PTZ00308 111 GRNSYQEIIDAGKFKVVKRTEGISTTDLVGRMLLCTKSHLLKSVDEVQL-ESSLFPYTPT-SHCLTTSRKIVQFSNNRSP 188 (353)
T ss_pred ccchHHHHHhCCeEEEEecCCCCCHHHHHHHHHHhhhcccccccccccc-ccccccCCCc-ceeecchhheeeccccCCC
Confidence 45789999999999999999999999999999999999875321 1122 1234588887 9999999999999999988
Q ss_pred CCCCeEEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhcCCccEEEEcCCCC
Q psy11147 85 KPTDRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACKYVDEVVIGAPYT 164 (279)
Q Consensus 85 ~~~~~iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~k~VD~Vvi~~p~~ 164 (279)
++++++||++|+||+||.||+++|++|+++||+|||||++|+.++.+||.++|+|+++||+++|++|++||+|++.+|+.
T Consensus 189 ~~~~kiv~~~G~FDl~H~GHi~~L~~A~~lgd~LIVgV~sD~~v~~~Kg~~~Pi~~~~eR~~~v~a~~~Vd~Vvi~~~~~ 268 (353)
T PTZ00308 189 KPGDRIVYVDGSFDLFHIGHIRVLQKARELGDYLIVGVHEDQVVNEQKGSNYPIMNLNERVLGVLSCRYVDEVVIGAPFD 268 (353)
T ss_pred CCCCeEEEECCccCCCCHHHHHHHHHHHHhCCEEEEEEcchHHhHhhcCCCCCCCCHHHHHHHHHhhCCCCeEEEcCCCC
Confidence 88889999999999999999999999999999999999999999999998789999999999999999999999998999
Q ss_pred ChHHHHHhcCCcEEEEcCCCCCC-CCCCCChhHHHHhCCeEEEeCCCCCCCHHHHHHHHHHhhhhhhhhhhhhhHHHHHH
Q psy11147 165 ITADMLSQLRVDIVCRGLAAVLP-DETGRDPYSEAKKLGKFKLIDSGNTTTTEKIVDRIVFHRLEFERRNFEKENKEMKL 243 (279)
Q Consensus 165 ~~~e~i~~~~id~vV~G~d~~~~-~~~~~d~~~~~k~~G~~~~i~~~~~ISSt~I~~rI~~~r~~y~~Rn~~K~~ke~~~ 243 (279)
.+.+++++++||++|+|.|+... ...+.|+|.+++.+|+|..+++++++|||.|++||+.||+.|++||.+|++||+++
T Consensus 269 ~~~~~i~~~~~d~vv~G~d~~~~~~~~~~d~y~~~k~~G~~~~i~~~~~~sTt~ii~RI~~~r~~~~~r~~~k~~~e~~~ 348 (353)
T PTZ00308 269 VTKEVIDSLHINVVVGGKFSDLVNEEGGSDPYEVPKAMGIFKEVDSGCDLTTDSIVDRVVKNRLAFLKRQAKKRAKEIKS 348 (353)
T ss_pred ChHHHHHHhCCCEEEECCCCccccCCCcccchHHHhcCceEEEeCCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998742 22347899999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q psy11147 244 IEL 246 (279)
Q Consensus 244 ~~~ 246 (279)
|+.
T Consensus 349 ~~~ 351 (353)
T PTZ00308 349 QEI 351 (353)
T ss_pred Hhh
Confidence 974
No 4
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=100.00 E-value=1.6e-38 Score=270.02 Aligned_cols=150 Identities=60% Similarity=1.043 Sum_probs=140.0
Q ss_pred CeEEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhcCCccEEEEcCCCCChH
Q psy11147 88 DRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACKYVDEVVIGAPYTITA 167 (279)
Q Consensus 88 ~~iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~k~VD~Vvi~~p~~~~~ 167 (279)
+++||++|+||+||.||+++|++|+++||+|||||++|+.++..|+.++|+|+++||+++|++|++||+|++.+|++++.
T Consensus 2 ~~iv~~~G~FD~~H~GHi~~L~~A~~lgd~liVgV~~D~~~~~~K~~~~pi~~~~eR~~~v~~~~~Vd~V~v~~~~~~~~ 81 (152)
T cd02173 2 DKVVYVDGAFDLFHIGHIEFLEKARELGDYLIVGVHDDQTVNEYKGSNYPIMNLHERVLSVLACRYVDEVVIGAPYVITK 81 (152)
T ss_pred CeEEEEcCcccCCCHHHHHHHHHHHHcCCEEEEEEeCcHHHHhhcCCCCCCCCHHHHHHHHHhcCCCCEEEECCCCcchH
Confidence 57999999999999999999999999999999999999999988987789999999999999999999999998888889
Q ss_pred HHHHhcCCcEEEEcCCCCCCC-CCCCChhHHHHhCCeEEEeCCCCCCCHHHHHHHHHHhhhhhhhhhhhhh
Q psy11147 168 DMLSQLRVDIVCRGLAAVLPD-ETGRDPYSEAKKLGKFKLIDSGNTTTTEKIVDRIVFHRLEFERRNFEKE 237 (279)
Q Consensus 168 e~i~~~~id~vV~G~d~~~~~-~~~~d~~~~~k~~G~~~~i~~~~~ISSt~I~~rI~~~r~~y~~Rn~~K~ 237 (279)
+++++++||++|+|.++.... ..+.++|.+++.+|++..+++.+.+|||.|++||+++|+.|++||.+|+
T Consensus 82 ~~~~~~~~d~vv~G~d~~~~~~~~~~~~~~~~~~~G~~~~v~~~~~~Sts~Ii~rI~~~~~~y~~r~~~k~ 152 (152)
T cd02173 82 ELIEHFKIDVVVHGKTEETPDSLDGEDPYAVPKEMGIFKEIDSGSDLTTRDIVNRIIKNRLAYEARNKKKE 152 (152)
T ss_pred HHHHHhCCCEEEECCCCccccccCchHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHhHHHHHHHHhccC
Confidence 999999999999999987642 2346788889999999999999999999999999999999999999985
No 5
>PLN02413 choline-phosphate cytidylyltransferase
Probab=100.00 E-value=1.9e-36 Score=277.02 Aligned_cols=156 Identities=37% Similarity=0.557 Sum_probs=140.3
Q ss_pred CCCCCeEEEEcCccCCCCHHHHHHHHHHHHcC--CeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhcCCccEEEEcC
Q psy11147 84 PKPTDRIVYVDGAYDLFHPGHLDFLEKAKQAG--DYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACKYVDEVVIGA 161 (279)
Q Consensus 84 ~~~~~~iV~v~G~FDlfH~GHi~~L~~A~~~g--d~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~k~VD~Vvi~~ 161 (279)
|.....+||++|+||+||.||+++|++|+++| ++|||||++|+.++.+||. |||+++||+++|++|+|||+|++++
T Consensus 23 ~~~r~~rVyvdG~FDLfH~GHir~L~qAK~lg~~d~LIVGV~sDe~v~~~KGr--PIm~~~ER~e~V~acKyVDeVV~~a 100 (294)
T PLN02413 23 PSDRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYKGK--TVMTEDERYESLRHCKWVDEVIPDA 100 (294)
T ss_pred CCCCceEEEEeCchhhCCHHHHHHHHHHHHhCCCCEEEEEecccHHHHhcCCC--CCCCHHHHHHHHHhcccccEEeeCC
Confidence 34445789999999999999999999999996 6999999999999999984 9999999999999999999999999
Q ss_pred CCCChHHHHHhcCCcEEEEcCCCCCCC-CCCCChhHHHHhCCeEEEeCCCCCCCHHHHHHHHHHhhhhhhhhhhhhhHHH
Q psy11147 162 PYTITADMLSQLRVDIVCRGLAAVLPD-ETGRDPYSEAKKLGKFKLIDSGNTTTTEKIVDRIVFHRLEFERRNFEKENKE 240 (279)
Q Consensus 162 p~~~~~e~i~~~~id~vV~G~d~~~~~-~~~~d~~~~~k~~G~~~~i~~~~~ISSt~I~~rI~~~r~~y~~Rn~~K~~ke 240 (279)
||.++.+||++++||+||+|.+..... ..+.|+|...+..|+|..++++.++|||.|++||+++++.|++||.+|+..-
T Consensus 101 P~~~t~efI~~~kpDiVvhGd~~~~d~~~~g~D~Y~~vK~~G~f~~i~Rt~gvSTTdII~RIlk~y~~Y~~Rn~~rg~~~ 180 (294)
T PLN02413 101 PWVITQEFLDKHRIDYVAHDALPYADASGAGKDVYEFVKKIGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLARGYSR 180 (294)
T ss_pred CccccHHHHHHhCCCEEEECCCCCccccccCchhHHHHHHCCeEEEecCCCCcCHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 999999999999999999997543322 2356889999999999999999999999999999999999999999997544
Q ss_pred H
Q psy11147 241 M 241 (279)
Q Consensus 241 ~ 241 (279)
.
T Consensus 181 ~ 181 (294)
T PLN02413 181 K 181 (294)
T ss_pred H
Confidence 3
No 6
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=100.00 E-value=1.3e-35 Score=251.62 Aligned_cols=145 Identities=42% Similarity=0.726 Sum_probs=134.9
Q ss_pred eEEEEcCccCCCCHHHHHHHHHHHHcC--CeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhcCCccEEEEcCCCCCh
Q psy11147 89 RIVYVDGAYDLFHPGHLDFLEKAKQAG--DYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACKYVDEVVIGAPYTIT 166 (279)
Q Consensus 89 ~iV~v~G~FDlfH~GHi~~L~~A~~~g--d~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~k~VD~Vvi~~p~~~~ 166 (279)
++||++|+||+||.||+++|++|+++| |+|||||++|+.+..+||. |+|+++||+++|++|+|||+|++.+|+..+
T Consensus 3 ~rV~~~G~FDl~H~GHi~~L~~A~~lg~~d~LiVgV~sD~~~~~~k~~--pi~~~~eR~~~l~~~~~Vd~Vi~~~~~~~~ 80 (150)
T cd02174 3 VRVYVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKGP--PVMTEEERYEAVRHCKWVDEVVEGAPYVTT 80 (150)
T ss_pred eEEEEeCccCCCCHHHHHHHHHHHHhCCCCEEEEEEecCHHHhhcCCC--CcCCHHHHHHHHHhcCCCCeEEECCCCCCh
Confidence 579999999999999999999999999 9999999999999888875 999999999999999999999999898888
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCCCCCChhHHHHhCCeEEEeCCCCCCCHHHHHHHHHHhhhhhhhhhhhh
Q psy11147 167 ADMLSQLRVDIVCRGLAAVLPDETGRDPYSEAKKLGKFKLIDSGNTTTTEKIVDRIVFHRLEFERRNFEK 236 (279)
Q Consensus 167 ~e~i~~~~id~vV~G~d~~~~~~~~~d~~~~~k~~G~~~~i~~~~~ISSt~I~~rI~~~r~~y~~Rn~~K 236 (279)
.+++++++||++|+|.||..+. .+.++|...+..|++..+++++.+|||.|++||+++++.|++||...
T Consensus 81 ~~~i~~~~~d~vv~G~d~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~Stt~ii~rI~~~~~~~~~r~~~~ 149 (150)
T cd02174 81 PEFLDKYKCDYVAHGDDIYLDA-DGEDCYQEVKDAGRFKEVKRTEGVSTTDLIGRILLDYRDYHRRNLQR 149 (150)
T ss_pred HHHHHHhCCCEEEECCCCCCCC-CchhHHHHHHhCCEEEEeCCCCCCCHHHHHHHHHHhHHHHHHhhhcc
Confidence 9999999999999999997643 33678888888999999999999999999999999999999999764
No 7
>KOG2804|consensus
Probab=99.97 E-value=6.9e-32 Score=246.83 Aligned_cols=148 Identities=36% Similarity=0.564 Sum_probs=137.4
Q ss_pred CeEEEEcCccCCCCHHHHHHHHHHHHcCC--eEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhcCCccEEEEcCCCCC
Q psy11147 88 DRIVYVDGAYDLFHPGHLDFLEKAKQAGD--YLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACKYVDEVVIGAPYTI 165 (279)
Q Consensus 88 ~~iV~v~G~FDlfH~GHi~~L~~A~~~gd--~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~k~VD~Vvi~~p~~~ 165 (279)
...||++|.|||||.||.+.|+||++++. ||||||++|+...++||. .+|+.+||++.|..|||||+||.+|||.+
T Consensus 63 PVRVYADGIyDLFH~GHarqL~QaK~~FPNvyLiVGvc~De~Thk~KG~--TVm~e~ERyE~lrHCryVDEVi~~APW~l 140 (348)
T KOG2804|consen 63 PVRVYADGIYDLFHYGHARQLEQAKKLFPNVYLIVGVCSDELTHKFKGR--TVMNENERYEALRHCRYVDEVIPNAPWTL 140 (348)
T ss_pred ceEEEccchHHHhhhhHHHHHHHHHHhCCCeEEEEeecCchhhhhccCc--eecChHHHHHHhhhhhhhhhhccCCCccc
Confidence 35799999999999999999999999986 999999999999999994 89999999999999999999999999999
Q ss_pred hHHHHHhcCCcEEEEcCCCCCCCCCCCChhHHHHhCCeEEEeCCCCCCCHHHHHHHHHHhhhhhhhhhhhhhH
Q psy11147 166 TADMLSQLRVDIVCRGLAAVLPDETGRDPYSEAKKLGKFKLIDSGNTTTTEKIVDRIVFHRLEFERRNFEKEN 238 (279)
Q Consensus 166 ~~e~i~~~~id~vV~G~d~~~~~~~~~d~~~~~k~~G~~~~i~~~~~ISSt~I~~rI~~~r~~y~~Rn~~K~~ 238 (279)
+.+||++++||+|.|.+-+... .+..|.|+..+..|.|....++++|||++|+.||++.++.|+.||..+|-
T Consensus 141 t~EFL~~HKIDfVAHDdIPY~s-~gsdDiY~~vK~~G~F~~T~RTeGvSTSDiI~rIVrDYD~YvrRNL~RGy 212 (348)
T KOG2804|consen 141 TPEFLEKHKIDFVAHDDIPYVS-AGSDDIYKPVKEAGMFLPTQRTEGVSTSDIITRIVRDYDVYVRRNLARGY 212 (348)
T ss_pred cHHHHHhcccceeeccCccccC-CCchhHHHHHHHhcccccccccCCccHHHHHHHHHHhHHHHHHhhhcccC
Confidence 9999999999999999876653 34478999999999999999999999999999999999999999987754
No 8
>KOG2803|consensus
Probab=99.97 E-value=1.8e-31 Score=245.28 Aligned_cols=175 Identities=30% Similarity=0.455 Sum_probs=146.9
Q ss_pred eEEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhcCCccEEEEcCCCCChHH
Q psy11147 89 RIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACKYVDEVVIGAPYTITAD 168 (279)
Q Consensus 89 ~iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~k~VD~Vvi~~p~~~~~e 168 (279)
-.||++||||++|.||...|++|+++||+||||||+|+.+...||+ |+|+.+||++++.+|||||+||.+|||..+.+
T Consensus 9 ~rVw~DGCfDm~HyGHanaLrQAkalGdkLivGVHsDeeI~~nKGp--PV~t~eERy~~v~~ikWVDEVV~~APyvtt~~ 86 (358)
T KOG2803|consen 9 VRVWADGCFDMVHYGHANALRQAKALGDKLIVGVHSDEEITLNKGP--PVFTDEERYEMVKAIKWVDEVVEGAPYVTTLE 86 (358)
T ss_pred eeEEeccchhhhhhhhhHHHHHHHHhCCeEEEEecchHHHHhcCCC--CcccHHHHHHHHhhcchhhhhhcCCCeeccHH
Confidence 3599999999999999999999999999999999999999999995 99999999999999999999999999999999
Q ss_pred HHHhcCCcEEEEcCCCCCCCCCCCChhHHHHhCCeEEEeCCCCCCCHHHHHHHHHH-hhhhhhhhhhhhhHHHHHHHHHH
Q psy11147 169 MLSQLRVDIVCRGLAAVLPDETGRDPYSEAKKLGKFKLIDSGNTTTTEKIVDRIVF-HRLEFERRNFEKENKEMKLIELI 247 (279)
Q Consensus 169 ~i~~~~id~vV~G~d~~~~~~~~~d~~~~~k~~G~~~~i~~~~~ISSt~I~~rI~~-~r~~y~~Rn~~K~~ke~~~~~~~ 247 (279)
+++++++|++|||+|-.... .+.|.|.+.+.+|+|.++.++.++|||+|+.|++- .+... +.+.+..-
T Consensus 87 ~md~y~cd~vvHGdDit~~a-~G~D~Y~~vK~agrykevKRT~GVSTTelvgRmll~~~~~~----------~~~~~~~~ 155 (358)
T KOG2803|consen 87 WMDKYGCDYVVHGDDITLDA-DGLDCYRLVKAAGRYKEVKRTEGVSTTELVGRMLLKKRNHH----------SDEVSSSQ 155 (358)
T ss_pred HHHHhCCeEEEeCCcceecC-CCccHHHHHHHhcchheeeeccCcchhhhhhHhhhhccCCC----------ccccchhh
Confidence 99999999999999966543 46899999999999999999999999999999874 44433 22222222
Q ss_pred Hhccc-cCcCcccccccccccccccccccc
Q psy11147 248 ESSKT-GATGMVGATTYATRHTLKATNCNV 276 (279)
Q Consensus 248 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 276 (279)
..... .-.++...++|+..-+|..+-.+|
T Consensus 156 ~e~~~~~g~~~~~~sp~t~~s~F~~tt~~i 185 (358)
T KOG2803|consen 156 RELSFSSGTDDDGLSPWTRVSVFLPTTQKI 185 (358)
T ss_pred hhhhhccccCCcccCCccceeeeeecCccc
Confidence 22222 233345578999888888766553
No 9
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=99.97 E-value=1.9e-30 Score=216.22 Aligned_cols=132 Identities=35% Similarity=0.558 Sum_probs=114.6
Q ss_pred eEEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhcCCccEEEEcCCCCChHH
Q psy11147 89 RIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACKYVDEVVIGAPYTITAD 168 (279)
Q Consensus 89 ~iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~k~VD~Vvi~~p~~~~~e 168 (279)
+.|+++|+||+||.||+++|++|+++||+|+|.+..|+.+...|+. .|||+.++|+++|.+|+|||+|++++||..+.+
T Consensus 2 ~rV~~~GtFDilH~GHi~~L~~Ak~lGd~liVv~a~de~~~~~~k~-~pi~~~~qR~evl~s~ryVD~vi~~~p~~~~~~ 80 (140)
T COG0615 2 KRVWADGTFDILHPGHIEFLRQAKKLGDELIVVVARDETVIKRKKR-KPIMPEEQRAEVLESLRYVDEVILGAPWDIKFE 80 (140)
T ss_pred cEEEEeeEEEEechhHHHHHHHHHHhCCeEEEEEeccHHHHHhcCC-CCCCCHHHHHHHHHcCcchheeeeCCccccChH
Confidence 4599999999999999999999999999888888888887764443 699999999999999999999999999999889
Q ss_pred HHHhcCCcEEEEcCCCCCCCCCCCChhHHHHhCCeEEEeCCCCC------CCHHHHHHHHHH
Q psy11147 169 MLSQLRVDIVCRGLAAVLPDETGRDPYSEAKKLGKFKLIDSGNT------TTTEKIVDRIVF 224 (279)
Q Consensus 169 ~i~~~~id~vV~G~d~~~~~~~~~d~~~~~k~~G~~~~i~~~~~------ISSt~I~~rI~~ 224 (279)
++++++||+|++|+|+.+. . +.+.|.+.+ +|.+..+.++++ +||+.|++||..
T Consensus 81 ~i~~~k~Div~lG~D~~~d-~-~~l~~~~~k-~G~~~~v~R~~g~~~~~~~st~~i~~~i~~ 139 (140)
T COG0615 81 DIEEYKPDIVVLGDDQKFD-E-DDLKYELVK-RGLFVEVKRTEGVSTCELISTSDIIKRILE 139 (140)
T ss_pred HHHHhCCCEEEECCCCcCC-h-HHHHHHHHH-cCCeeEEEeccCcccCcccchHHHHHHHhc
Confidence 9999999999999999843 2 234555566 899998887765 899999999864
No 10
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=99.96 E-value=7.6e-29 Score=235.86 Aligned_cols=137 Identities=39% Similarity=0.647 Sum_probs=126.0
Q ss_pred CCCCeEEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhcCCccEEEEcCCCC
Q psy11147 85 KPTDRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACKYVDEVVIGAPYT 164 (279)
Q Consensus 85 ~~~~~iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~k~VD~Vvi~~p~~ 164 (279)
++++++||+.|+||++|.||+.+|++|+++|+.|+||+++|+.+...|++ |+|+++||+++|++|+|||+|++++||+
T Consensus 8 ~~~~~~v~~~G~FD~vH~GH~~~L~qAk~~g~~Livgv~~d~~i~~~K~~--pi~~~eeR~~~l~~~~~VD~Vv~~~p~~ 85 (353)
T PTZ00308 8 KPGTIRVWVDGCFDMLHFGHANALRQARALGDELFVGCHSDEEIMRNKGP--PVMHQEERYEALRACKWVDEVVEGYPYT 85 (353)
T ss_pred CCCcEEEEEEeecccCCHHHHHHHHHHHHhCCEEEEEeCCHHHHhhcCCC--CCCCHHHHHHHHHhcCCccEEEECCCCC
Confidence 34568999999999999999999999999999999999999999888874 8999999999999999999999988999
Q ss_pred ChHHHHHhcCCcEEEEcCCCCCCCCCCCChhHHHHhCCeEEEeCCCCCCCHHHHHHHHHH
Q psy11147 165 ITADMLSQLRVDIVCRGLAAVLPDETGRDPYSEAKKLGKFKLIDSGNTTTTEKIVDRIVF 224 (279)
Q Consensus 165 ~~~e~i~~~~id~vV~G~d~~~~~~~~~d~~~~~k~~G~~~~i~~~~~ISSt~I~~rI~~ 224 (279)
.+.+|+++++||+||+|+|+.++.. +.+.|...+..|++..+++++++|||+|++||+.
T Consensus 86 ~~~~fI~~l~~d~vv~GdD~~~g~~-g~~~~~~lk~~G~~~~v~rt~g~STt~ii~ril~ 144 (353)
T PTZ00308 86 TRLEDLERLECDFVVHGDDISVDLN-GRNSYQEIIDAGKFKVVKRTEGISTTDLVGRMLL 144 (353)
T ss_pred chHHHHHHhCCCEEEECCCCCCCCC-ccchHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Confidence 8889999999999999999999743 4566778888999999999999999999999985
No 11
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=99.96 E-value=1.4e-28 Score=237.17 Aligned_cols=135 Identities=36% Similarity=0.644 Sum_probs=123.1
Q ss_pred CCeEEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhcCCccEEEEcCCCCCh
Q psy11147 87 TDRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACKYVDEVVIGAPYTIT 166 (279)
Q Consensus 87 ~~~iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~k~VD~Vvi~~p~~~~ 166 (279)
...+||++|+||+||.||+.+|++|+++||+|||||++|+.+..+|| .|+|+++||+++|++|++||+|++.+||..+
T Consensus 52 ~~~rV~~~G~FDllH~GH~~~L~qAk~lGd~LIVGV~SDe~i~~~Kg--~PV~~~eER~~~v~alk~VD~Vv~~apy~~~ 129 (418)
T PLN02406 52 KPVRVYMDGCFDMMHYGHANALRQARALGDELVVGVVSDEEIIANKG--PPVTPMHERMIMVSGVKWVDEVIPDAPYAIT 129 (418)
T ss_pred CceEEEEcCeeCCCCHHHHHHHHHHHHhCCEEEEEEecChhhhccCC--CCcCCHHHHHHHHHhcCCCceEEeCCccccc
Confidence 34689999999999999999999999999999999999999988887 4999999999999999999999999999877
Q ss_pred HHHH----HhcCCcEEEEcCCCCCCCCCCCChhHHHHhCCeEEEeCCCCCCCHHHHHHHHHH
Q psy11147 167 ADML----SQLRVDIVCRGLAAVLPDETGRDPYSEAKKLGKFKLIDSGNTTTTEKIVDRIVF 224 (279)
Q Consensus 167 ~e~i----~~~~id~vV~G~d~~~~~~~~~d~~~~~k~~G~~~~i~~~~~ISSt~I~~rI~~ 224 (279)
.+++ ++++||++|+|+|+... ..+.|.|.+.+.+|++..+++++++|||+|++||+.
T Consensus 130 ~d~~~~li~~~~~D~vVhGdD~~~~-~~g~d~y~~~k~~Gr~~~i~rt~GvSTTdIv~Ril~ 190 (418)
T PLN02406 130 EEFMNKLFNEYNIDYIIHGDDPCLL-PDGTDAYALAKKAGRYKQIKRTEGVSSTDIVGRMLL 190 (418)
T ss_pred hHHHHHHHHHhCCCEEEECCCcccc-CCchHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHH
Confidence 7766 58999999999998753 234688888999999999999999999999999985
No 12
>cd02172 RfaE_N N-terminal domain of RfaE. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=99.96 E-value=9.8e-28 Score=201.88 Aligned_cols=136 Identities=24% Similarity=0.370 Sum_probs=118.7
Q ss_pred CCeEEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhcCCccEEEEcCCCCCh
Q psy11147 87 TDRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACKYVDEVVIGAPYTIT 166 (279)
Q Consensus 87 ~~~iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~k~VD~Vvi~~p~~~~ 166 (279)
+.++|++.|+||++|.||+.+|++|+++|+.++|+|++|+.++..+ ++||++++||++++++|++||.|++. |+..+
T Consensus 3 ~~~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~vv~~~~d~~~~~~~--~~~i~~~~eR~~~l~~lg~VD~vi~~-~~~~~ 79 (144)
T cd02172 3 GKTVVLCHGVFDLLHPGHVRHLQAARSLGDILVVSLTSDRYVNKGP--GRPIFPEDLRAEVLAALGFVDYVVLF-DNPTA 79 (144)
T ss_pred CCEEEEEecccCCCCHHHHHHHHHHHHhCCeEEEEEeChHHhccCC--CCCCCCHHHHHHHHHccCCccEEEEC-CCCCH
Confidence 4578999999999999999999999999999999999998776544 36999999999999999889999987 67788
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCCC-----CCChhHHHHhCCeEEEeCCCCCCCHHHHHHHHHHhh
Q psy11147 167 ADMLSQLRVDIVCRGLAAVLPDET-----GRDPYSEAKKLGKFKLIDSGNTTTTEKIVDRIVFHR 226 (279)
Q Consensus 167 ~e~i~~~~id~vV~G~d~~~~~~~-----~~d~~~~~k~~G~~~~i~~~~~ISSt~I~~rI~~~r 226 (279)
++|++++++++||+|.||.+|... .++...+.+.++.+.+. ++..+|||+|++||..+.
T Consensus 80 ~~fi~~l~~~~vv~G~d~~fg~~~~~~~~~g~~~~l~~~g~~~~~~-~~~~~sts~li~~i~~~~ 143 (144)
T cd02172 80 LEIIDALQPNIYVKGGDYENPENDVTGKIAPEAEAVKAYGGKIVFT-GEIVFSSSALINRIFDEL 143 (144)
T ss_pred HHHHHHhCCCEEEECCCcccCccccccchhhhHHHHHHhCCEEEEe-cCCCcchHHHHHHHHhhc
Confidence 999999999999999999998653 34555566667777777 889999999999998764
No 13
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.95 E-value=3.3e-27 Score=198.56 Aligned_cols=133 Identities=27% Similarity=0.432 Sum_probs=114.0
Q ss_pred CCeEEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhcCCccEEEEcCCCCCh
Q psy11147 87 TDRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACKYVDEVVIGAPYTIT 166 (279)
Q Consensus 87 ~~~iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~k~VD~Vvi~~p~~~~ 166 (279)
++++|++.|+||++|.||+.+|++|+++|+.++|||+.|+.....|+...|+++++||++++++|+|||+|++.++ ..+
T Consensus 10 ~~~~v~~~G~FDgvH~GH~~ll~~a~~~~~~~~v~v~~d~~~~~~k~~~~~l~~~eeR~~~l~~~~~VD~vi~f~~-~~~ 88 (144)
T TIGR02199 10 GKKIVFTNGCFDILHAGHVSYLQQARALGDRLVVGVNSDASVKRLKGETRPINPEEDRAEVLAALSSVDYVVIFDE-DTP 88 (144)
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHhCCccEEEEECCcCHHHhCCCCCCcCCHHHHHHHHHhcCCCCEEEECCC-CCH
Confidence 3578999999999999999999999999999999999999876666644689999999999999999999998654 356
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCCCCCChhHH-HHhCCeEEEeCCCCCCCHHHHHHHHH
Q psy11147 167 ADMLSQLRVDIVCRGLAAVLPDETGRDPYSE-AKKLGKFKLIDSGNTTTTEKIVDRIV 223 (279)
Q Consensus 167 ~e~i~~~~id~vV~G~d~~~~~~~~~d~~~~-~k~~G~~~~i~~~~~ISSt~I~~rI~ 223 (279)
++|++.+++++||+|.||.+... ..+.+ .+.+|.+.+++....+|||+|++||+
T Consensus 89 ~~fi~~l~~~~vv~G~d~~~~~~---~~~~~~~~~g~~v~~~~~~~~iSSs~Ir~ri~ 143 (144)
T TIGR02199 89 EELIGELKPDILVKGGDYKVETL---VGAELVESYGGQVVLLPFVEGRSTTAIIEKIL 143 (144)
T ss_pred HHHHHHhCCCEEEECCCCCCCcc---hhHHHHHHcCCEEEEEeCCCCcCHHHHHHHHh
Confidence 88999999999999999987432 11233 34467899999989999999999996
No 14
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=99.94 E-value=7.1e-26 Score=187.53 Aligned_cols=133 Identities=38% Similarity=0.593 Sum_probs=114.1
Q ss_pred CeEEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhcCCccEEEEcCCCCChH
Q psy11147 88 DRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACKYVDEVVIGAPYTITA 167 (279)
Q Consensus 88 ~~iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~k~VD~Vvi~~p~~~~~ 167 (279)
|++|++.|+||+||.||+.+|++|++++++++|+++.|+.++..|+ .|+++.+||++++++|++||.+++.+|++...
T Consensus 1 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~l~v~v~~~~~~~~~~~--~~~~~~~eR~~~l~~~~~vd~v~~~~~~~~~~ 78 (136)
T cd02170 1 MKRVYAAGTFDIIHPGHIRFLEEAKKLGDYLIVGVARDETVAKIKR--RPILPEEQRAEVVEALKYVDEVILGHPWSYFK 78 (136)
T ss_pred CeEEEEcCccCCCCHHHHHHHHHHHHhCCEEEEEECCcHHHHhcCC--CCCCCHHHHHHHHHcCCCcCEEEECCCCCHhH
Confidence 5789999999999999999999999999999999999987766554 48999999999999999999999988876544
Q ss_pred HHHHhcCCcEEEEcCCCCCCCCCCCChhHHHHhCCeEEEeC--CCCCCCHHHHHHHHHH
Q psy11147 168 DMLSQLRVDIVCRGLAAVLPDETGRDPYSEAKKLGKFKLID--SGNTTTTEKIVDRIVF 224 (279)
Q Consensus 168 e~i~~~~id~vV~G~d~~~~~~~~~d~~~~~k~~G~~~~i~--~~~~ISSt~I~~rI~~ 224 (279)
.+..++++++|+|.|+.+|....+ .+...+..|.+..+. ++..+|||.|+++|.+
T Consensus 79 -~l~~~~~~~vv~G~d~~fg~~~~~-~~~~l~~~g~~~~~~~~~~~~vSSt~Ir~~i~~ 135 (136)
T cd02170 79 -PLEELKPDVIVLGDDQKNGVDEEE-VYEELKKRGKVIEVPRKKTEGISSSDIIKRILE 135 (136)
T ss_pred -HHHHHCCCEEEECCCCCCCCcchh-HHHHHHHCCeEEEECCCCCCCCcHHHHHHHHHh
Confidence 456789999999999999854433 345566678887887 8899999999999964
No 15
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=99.93 E-value=3.6e-25 Score=181.43 Aligned_cols=124 Identities=26% Similarity=0.328 Sum_probs=102.0
Q ss_pred EEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhcCCccEEEEcCCCCChHHHH
Q psy11147 91 VYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACKYVDEVVIGAPYTITADML 170 (279)
Q Consensus 91 V~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~k~VD~Vvi~~p~~~~~e~i 170 (279)
|++.|+||++|.||+++|++|+++|++++|||++|+.....+ ..|+++++||.+++++|+|||.|+...|+....+++
T Consensus 1 v~~~G~FDg~H~GH~~~l~~a~~~~~~~iv~v~~d~~~~~~~--~~~i~~~eeR~~~l~~~~~Vd~vi~~~~~~~f~~~l 78 (125)
T TIGR01518 1 VLTYGTFDLLHWGHINLLERAKQLGDYLIVALSTDEFNLQKQ--KKAYHSYEHRKLILETIRYVDLVIPEKSWEQKKQDI 78 (125)
T ss_pred CEEcceeCCCCHHHHHHHHHHHHcCCEEEEEEechHHHhhcC--CCCCCCHHHHHHHHHcCCCccEEecCCCccchHHHH
Confidence 578999999999999999999999999999999998764333 368999999999999999999998766776666777
Q ss_pred HhcCCcEEEEcCCCCCCCCCCCChhHHHHh-CCeEEEeCCCCCCCHHHHHHHH
Q psy11147 171 SQLRVDIVCRGLAAVLPDETGRDPYSEAKK-LGKFKLIDSGNTTTTEKIVDRI 222 (279)
Q Consensus 171 ~~~~id~vV~G~d~~~~~~~~~d~~~~~k~-~G~~~~i~~~~~ISSt~I~~rI 222 (279)
+.+++++||+|.||. ++...+.+. ++....++.+..+|||.||+.|
T Consensus 79 ~~~~~~~vv~G~D~~------g~~~~l~~~~~~~v~~v~~~~~vSST~Ir~~~ 125 (125)
T TIGR01518 79 IDFNIDVFVMGDDWE------GKFDFLKDECPLKVVYLPRTEGVSTTKIKKEI 125 (125)
T ss_pred HHcCCCEEEECCCcc------chHHHHhhccCcEEEEeCCCCCccHHHHHhhC
Confidence 899999999999983 222122222 3455668888999999999875
No 16
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
Probab=99.92 E-value=3.5e-24 Score=175.93 Aligned_cols=128 Identities=23% Similarity=0.324 Sum_probs=105.7
Q ss_pred CeEEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhcCCccEEEEcCCCCChH
Q psy11147 88 DRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACKYVDEVVIGAPYTITA 167 (279)
Q Consensus 88 ~~iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~k~VD~Vvi~~p~~~~~ 167 (279)
|++|++.|+||++|.||+.+|++|+++|+.|+|+++.|+.. ..++. .++++++||++++++|++||+|+...++....
T Consensus 1 ~~~v~~~G~FDgvH~GH~~ll~~a~~~~~~l~v~v~~d~~~-~~~~~-~~~~~~~~R~~~l~~~~~vd~v~~~~~~~~f~ 78 (129)
T cd02171 1 MKVVITYGTFDLLHIGHLNLLERAKALGDKLIVAVSTDEFN-AGKGK-KAVIPYEQRAEILESIRYVDLVIPETNWEQKI 78 (129)
T ss_pred CcEEEEeeeeccCCHHHHHHHHHHHHhCCEEEEEEeccHhH-HhcCC-CCCCCHHHHHHHHHcCCccCEEecCCCccChH
Confidence 57899999999999999999999999999999999998743 33443 58999999999999998899997654555545
Q ss_pred HHHHhcCCcEEEEcCCCCCCCCCCCChhHHHHhCCeEEEeCCCCCCCHHHHHHHHHH
Q psy11147 168 DMLSQLRVDIVCRGLAAVLPDETGRDPYSEAKKLGKFKLIDSGNTTTTEKIVDRIVF 224 (279)
Q Consensus 168 e~i~~~~id~vV~G~d~~~~~~~~~d~~~~~k~~G~~~~i~~~~~ISSt~I~~rI~~ 224 (279)
+.++.+++++||+|.||. ++. ...+..|.+..++.+..+|||.||+.|.+
T Consensus 79 ~~~~~l~~~~vv~G~d~~------g~~-~~l~~~~~v~~~~~~~~iSSt~Ir~~i~~ 128 (129)
T cd02171 79 EDIKKYNVDVFVMGDDWE------GKF-DFLKEYCEVVYLPRTKGISSTQLKEMLKK 128 (129)
T ss_pred HHHHHhCCCEEEECCCCc------chH-HHHHhCcEEEEeCCCCCcChHHHHHHHhh
Confidence 556889999999999983 222 33455578888999999999999999853
No 17
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.91 E-value=1.4e-23 Score=205.51 Aligned_cols=136 Identities=25% Similarity=0.406 Sum_probs=120.9
Q ss_pred CCCCeEEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhcCCccEEEEcCCCC
Q psy11147 85 KPTDRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACKYVDEVVIGAPYT 164 (279)
Q Consensus 85 ~~~~~iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~k~VD~Vvi~~p~~ 164 (279)
..++++|++.|+||++|.||+++|++|+++|++|+||++.|+.+...|+..+|+++++||.+.+++|++||.|+..+ ..
T Consensus 337 ~~~~~iv~~~G~fD~~H~GH~~~l~~a~~~~~~l~v~v~~d~~~~~~k~~~~pi~~~~~R~~~~~~~~~vd~v~~~~-~~ 415 (473)
T PRK11316 337 ARGEKIVMTNGCFDILHAGHVSYLANARKLGDRLIVAVNSDASVKRLKGEGRPVNPLEQRMAVLAALEAVDWVVPFE-ED 415 (473)
T ss_pred hcCCeEEEEecccccCCHHHHHHHHHHHHhCCeeEEEEeCchhHHHhCCCCCCCCCHHHHHHHHHhcCcCCEEEeCC-CC
Confidence 34579999999999999999999999999999999999999999888887789999999999999999999998764 34
Q ss_pred ChHHHHHhcCCcEEEEcCCCCCCCCCCCChhHHHHhCCeEEEeCCCCCCCHHHHHHHHH
Q psy11147 165 ITADMLSQLRVDIVCRGLAAVLPDETGRDPYSEAKKLGKFKLIDSGNTTTTEKIVDRIV 223 (279)
Q Consensus 165 ~~~e~i~~~~id~vV~G~d~~~~~~~~~d~~~~~k~~G~~~~i~~~~~ISSt~I~~rI~ 223 (279)
.+.+|+++++||+||+|.||.+... ...+.+.+.+|++.++++++.+|||.|++||.
T Consensus 416 ~~~~~~~~~~~d~vv~G~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~st~~i~~ri~ 472 (473)
T PRK11316 416 TPQRLIAEILPDLLVKGGDYKPEEI--AGSKEVWANGGEVKVLNFEDGCSTTNIIKKIR 472 (473)
T ss_pred CHHHHHHHhCCCEEEECCCCCCCcc--ccHHHHHHcCCEEEEEcCCCCcCHHHHHHHHh
Confidence 6788999999999999999976433 23456778899999999999999999999995
No 18
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.91 E-value=1e-23 Score=200.39 Aligned_cols=135 Identities=29% Similarity=0.467 Sum_probs=122.8
Q ss_pred CCeEEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhcCCccEEEEcCCCCCh
Q psy11147 87 TDRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACKYVDEVVIGAPYTIT 166 (279)
Q Consensus 87 ~~~iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~k~VD~Vvi~~p~~~~ 166 (279)
++++|++.||||++|.||+.+|++|+++||.||||+++|.++.+.||..+||.+++.|+..+.++..||.|++.+. +.+
T Consensus 331 ~~~vvfTNGcFDIlH~GHvsyL~~Ar~lgd~Livg~NsDaSvkrLKG~~RPin~~~~Ra~vLa~L~~VD~vV~F~e-dTP 409 (467)
T COG2870 331 GKKVVFTNGCFDILHAGHVTYLAQARALGDRLIVGVNSDASVKRLKGESRPINSEEDRAAVLAALESVDLVVIFDE-DTP 409 (467)
T ss_pred cCeEEEecchhhhccccHHHHHHHHHhhCCeEEEEeccchhhhhhcCCCCCCCcHHHHHHHHhhcccceEEEEecC-CCH
Confidence 3569999999999999999999999999999999999999999999999999999999999999999999998753 677
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCCCCCChhHHHHhCCeEEEeCCCCCCCHHHHHHHHHH
Q psy11147 167 ADMLSQLRVDIVCRGLAAVLPDETGRDPYSEAKKLGKFKLIDSGNTTTTEKIVDRIVF 224 (279)
Q Consensus 167 ~e~i~~~~id~vV~G~d~~~~~~~~~d~~~~~k~~G~~~~i~~~~~ISSt~I~~rI~~ 224 (279)
.++|+.++||++|+|.||......+.+. +..++|....++-..+.|||.|+++|..
T Consensus 410 ~~LI~~~~PdilVKGgDy~~~~i~g~~~--v~~~GG~v~~i~f~~g~STt~ii~ki~~ 465 (467)
T COG2870 410 EELIEAVKPDILVKGGDYKIEKIVGADI--VEAYGGEVLLIPFEEGKSTTKIIEKIRA 465 (467)
T ss_pred HHHHHHhCcceEEccCCCChhhccchhh--hhhcCCeEEEEecccCCcHHHHHHHHhc
Confidence 8999999999999999998876655544 4567999999999999999999999964
No 19
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=99.81 E-value=3.6e-19 Score=154.59 Aligned_cols=133 Identities=16% Similarity=0.209 Sum_probs=100.3
Q ss_pred EEEcCccCCCCHHHHHHHHHHHHcCC-----eEEEEEcCChhhh-hccCCCCCCCCHHHHHHHHHhcCCccEEEEcCCCC
Q psy11147 91 VYVDGAYDLFHPGHLDFLEKAKQAGD-----YLIVGIHPDHVVA-WYKGYGYPIMNLHERVLSVLACKYVDEVVIGAPYT 164 (279)
Q Consensus 91 V~v~G~FDlfH~GHi~~L~~A~~~gd-----~LIVgv~~D~~v~-~~Kg~~~pi~s~~ER~~~v~~~k~VD~Vvi~~p~~ 164 (279)
|++.|+||++|.||+.+|++|+++|+ .++|.+.+++... ..+....++++.++|+.+++++. ||.+++. ||+
T Consensus 2 vv~iG~FDgvH~GH~~ll~~a~~~a~~~~~~~vvv~f~~~p~~~~~~~~~~~~l~~~e~R~~~l~~l~-vd~v~~~-~f~ 79 (180)
T cd02064 2 VVAIGNFDGVHLGHQALIKTLKKIARERGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEKLELLESLG-VDYLLVL-PFD 79 (180)
T ss_pred EEEEecCCccCHHHHHHHHHHHHHHHHcCCCeEEEEECCCHHHHhCCCCCCCcCCCHHHHHHHHHHcC-CCEEEEe-CCC
Confidence 78999999999999999999999975 3566666655321 11223468999999999999995 9999986 564
Q ss_pred ------ChHHHHHh----cCCcEEEEcCCCCCCCCCCCChhHHH---Hh-CCeEEEeCC----CCCCCHHHHHHHHHHh
Q psy11147 165 ------ITADMLSQ----LRVDIVCRGLAAVLPDETGRDPYSEA---KK-LGKFKLIDS----GNTTTTEKIVDRIVFH 225 (279)
Q Consensus 165 ------~~~e~i~~----~~id~vV~G~d~~~~~~~~~d~~~~~---k~-~G~~~~i~~----~~~ISSt~I~~rI~~~ 225 (279)
.+++|++. .+++++|+|.||.||....+|...+. +. +.....++. +..||||.||+.|.+.
T Consensus 80 ~~~~~~s~~~Fi~~il~~~~~~~ivvG~Df~FG~~~~g~~~~L~~~~~~~g~~v~~v~~~~~~~~~iSST~IR~~i~~G 158 (180)
T cd02064 80 KEFASLSAEEFVEDLLVKLNAKHVVVGFDFRFGKGRSGDAELLKELGKKYGFEVTVVPPVTLDGERVSSTRIREALAEG 158 (180)
T ss_pred HHHHcCCHHHHHHHHHhhcCCeEEEEccCCCCCCCCCCCHHHHHHhhhhcCcEEEEeCcEecCCcEEcHHHHHHHHHhC
Confidence 45667654 38999999999999987777765442 22 334455553 4789999999999653
No 20
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=99.80 E-value=1.3e-18 Score=163.14 Aligned_cols=134 Identities=15% Similarity=0.196 Sum_probs=103.2
Q ss_pred EEEEcCccCCCCHHHHHHHHHHHHcCCeE-----EEEEcCChhhhh-ccCCCCCCCCHHHHHHHHHhcCCccEEEEcCCC
Q psy11147 90 IVYVDGAYDLFHPGHLDFLEKAKQAGDYL-----IVGIHPDHVVAW-YKGYGYPIMNLHERVLSVLACKYVDEVVIGAPY 163 (279)
Q Consensus 90 iV~v~G~FDlfH~GHi~~L~~A~~~gd~L-----IVgv~~D~~v~~-~Kg~~~pi~s~~ER~~~v~~~k~VD~Vvi~~p~ 163 (279)
.|++.|+||++|.||+.+|++|+++|+.+ ++.+.+++.... .+..+.++++++||+..+++| +||.+++. ||
T Consensus 15 ~vv~iG~FDGvH~GHq~Ll~~a~~~a~~~~~~~~vitFd~~p~~~~~~~~~~~~l~t~eeR~~~l~~~-gVD~~~~~-~F 92 (305)
T PRK05627 15 CVLTIGNFDGVHRGHQALLARAREIARERGLPSVVMTFEPHPREVFAPDKAPARLTPLRDKAELLAEL-GVDYVLVL-PF 92 (305)
T ss_pred EEEEEeeCCcCCHHHHHHHHHHHHHHHhcCCCEEEEEecCCHHHHcCCCCCCcCCCCHHHHHHHHHHc-CCCEEEEe-cC
Confidence 79999999999999999999999998742 566665553211 122346899999999999999 59999986 67
Q ss_pred C------ChHHHHHh-----cCCcEEEEcCCCCCCCCCCCChhHHHHh----CCeEEEeC----CCCCCCHHHHHHHHHH
Q psy11147 164 T------ITADMLSQ-----LRVDIVCRGLAAVLPDETGRDPYSEAKK----LGKFKLID----SGNTTTTEKIVDRIVF 224 (279)
Q Consensus 164 ~------~~~e~i~~-----~~id~vV~G~d~~~~~~~~~d~~~~~k~----~G~~~~i~----~~~~ISSt~I~~rI~~ 224 (279)
+ ++++|+++ ++++.||+|.||.||....++...+.+. +.....++ .+..||||.||+.|.+
T Consensus 93 ~~~~~~ls~e~Fi~~~l~~~l~~~~iVvG~Df~FG~~~~G~~~~L~~~~~~~g~~v~~v~~~~~~~~~ISST~IR~~I~~ 172 (305)
T PRK05627 93 DEEFAKLSAEEFIEDLLVKGLNAKHVVVGFDFRFGKKRAGDFELLKEAGKEFGFEVTIVPEVKEDGERVSSTAIRQALAE 172 (305)
T ss_pred CHHHhcCCHHHHHHHHHHhccCCCEEEECCCCCCCCCCCCCHHHHHHHHHHcCcEEEEeccEecCCCcCchHHHHHHHHc
Confidence 5 56778764 8999999999999998777776544333 33444454 3579999999999975
Q ss_pred h
Q psy11147 225 H 225 (279)
Q Consensus 225 ~ 225 (279)
-
T Consensus 173 G 173 (305)
T PRK05627 173 G 173 (305)
T ss_pred C
Confidence 3
No 21
>PRK07143 hypothetical protein; Provisional
Probab=99.80 E-value=1.8e-18 Score=160.20 Aligned_cols=134 Identities=16% Similarity=0.292 Sum_probs=108.0
Q ss_pred CeEEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhcCCccEEEEcCCCC---
Q psy11147 88 DRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACKYVDEVVIGAPYT--- 164 (279)
Q Consensus 88 ~~iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~k~VD~Vvi~~p~~--- 164 (279)
.++|++.|.||++|.||+.+|++|++.++.++|...+++.... ++.+.++++++||...+++| +||.+++. ||+
T Consensus 15 ~~~vvaiG~FDGvH~GHq~Ll~~a~~~~~~~vV~tF~~P~~~~-~~~~~~l~~~~er~~~l~~~-Gvd~~~~~-~F~~~~ 91 (279)
T PRK07143 15 EKPTFVLGGFESFHLGHLELFKKAKESNDEIVIVIFKNPENLP-KNTNKKFSDLNSRLQTLANL-GFKNIILL-DFNEEL 91 (279)
T ss_pred CCeEEEEccCCcCCHHHHHHHHHHHHCCCcEEEEEeCChHHhc-ccCcccCCCHHHHHHHHHHC-CCCEEEEe-CCCHHH
Confidence 3679999999999999999999999999877776666765322 33345799999999999999 89999887 676
Q ss_pred ---ChHHHHHh---cCCcEEEEcCCCCCCCCCCCChhHHHHhCCeEEEeC----CCCCCCHHHHHHHHHH
Q psy11147 165 ---ITADMLSQ---LRVDIVCRGLAAVLPDETGRDPYSEAKKLGKFKLID----SGNTTTTEKIVDRIVF 224 (279)
Q Consensus 165 ---~~~e~i~~---~~id~vV~G~d~~~~~~~~~d~~~~~k~~G~~~~i~----~~~~ISSt~I~~rI~~ 224 (279)
++++|++. ++++.||+|.|+.||....+|+..+.+..+....++ .+..||||.||+.|.+
T Consensus 92 a~ls~e~Fi~~ll~l~~~~iVvG~Df~FG~~r~G~~~~L~~~~~~v~~v~~~~~~g~~ISST~IR~~l~~ 161 (279)
T PRK07143 92 QNLSGNDFIEKLTKNQVSFFVVGKDFRFGKNASWNADDLKEYFPNVHIVEILKINQQKISTSLLKEFIEF 161 (279)
T ss_pred hCCCHHHHHHHHHhcCCCEEEECCCcccCCCCCCCHHHHHHhCCcEEEeCCEEcCCcEEcHHHHHHHHHc
Confidence 67778865 799999999999999888888866655532444444 4578999999999865
No 22
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=99.77 E-value=1.5e-18 Score=147.73 Aligned_cols=131 Identities=21% Similarity=0.265 Sum_probs=95.8
Q ss_pred eEEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhc----CCccEEEE---cC
Q psy11147 89 RIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLAC----KYVDEVVI---GA 161 (279)
Q Consensus 89 ~iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~----k~VD~Vvi---~~ 161 (279)
+.|++.|+||+||.||+.+|++|+.+||+|+|||++|+.+..+|+ .|+++.++|+++|+++ ...+.+.+ .+
T Consensus 2 ~~v~~gGtFDplH~GH~~ll~~A~~~~d~livgi~~d~~~~~~K~--~~i~~~e~R~~~v~~~~~~~~~~~~~~i~~i~d 79 (153)
T PRK00777 2 MKVAVGGTFDPLHDGHRALLRKAFELGKRVTIGLTSDEFAKSYKK--HKVRPYEVRLKNLKKFLKAVEYDREYEIVKIDD 79 (153)
T ss_pred cEEEEecccCCCCHHHHHHHHHHHHcCCEEEEEEcCCccccccCC--CCCCCHHHHHHHHHHHHHhcCCCCcEEEEeccc
Confidence 579999999999999999999999999999999999988766665 5899999999999864 12333332 34
Q ss_pred CCCChHHHHHhcCCcEEEEcCCCCCCCCCCCChhHHHHhCCe----EEEeC-----CCCCCCHHHHHHHHHHhhhh
Q psy11147 162 PYTITADMLSQLRVDIVCRGLAAVLPDETGRDPYSEAKKLGK----FKLID-----SGNTTTTEKIVDRIVFHRLE 228 (279)
Q Consensus 162 p~~~~~e~i~~~~id~vV~G~d~~~~~~~~~d~~~~~k~~G~----~~~i~-----~~~~ISSt~I~~rI~~~r~~ 228 (279)
+|.++. ..++|++|.|.|...+.. ......+..|. ...++ .+..+|||.||+++++.+..
T Consensus 80 ~~gp~~----~~~~d~ivvs~et~~~~~---~in~~r~~~gl~~l~i~~v~~~~~~~~~~~SSt~Ir~~~~~~~~~ 148 (153)
T PRK00777 80 PYGPAL----EDDFDAIVVSPETYPGAL---KINEIRRERGLKPLEIVVIDFVLAEDGKPISSTRIRRGEIDEHGN 148 (153)
T ss_pred cCCCcc----ccCCCEEEEChhhhhhHH---HHHHHHHHCCCCceEEEEEeeeecCCCCeeeHHHHHHhhhccccC
Confidence 555442 236999999998655421 12223344442 22333 36889999999999886654
No 23
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.71 E-value=7.3e-17 Score=137.80 Aligned_cols=131 Identities=23% Similarity=0.276 Sum_probs=95.3
Q ss_pred CeEEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHh-cCCccEEEEcCCCCCh
Q psy11147 88 DRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLA-CKYVDEVVIGAPYTIT 166 (279)
Q Consensus 88 ~~iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~-~k~VD~Vvi~~p~~~~ 166 (279)
|++++++|+||++|.||+.++++|++.+|.|+|++..++ .| .++++.++|+++++. ++++|.+.+..-.+.+
T Consensus 1 ~~igi~gGsFdP~H~GHl~~~~~a~~~~d~v~v~~~~~~----~k---~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~t 73 (159)
T PRK00168 1 MKIAIYPGSFDPITNGHLDIIERASRLFDEVIVAVAINP----SK---KPLFSLEERVELIREATAHLPNVEVVSFDGLL 73 (159)
T ss_pred CcEEEEeeecCCCCHHHHHHHHHHHHHCCEEEEEECCCC----CC---CCCCCHHHHHHHHHHHHcCCCCEEEecCCccH
Confidence 468999999999999999999999999999999998764 24 378999999999997 8899998876423467
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCCCCCChhHHHHhC----CeEEEeCCC--CCCCHHHHHHHHHHh
Q psy11147 167 ADMLSQLRVDIVCRGLAAVLPDETGRDPYSEAKKL----GKFKLIDSG--NTTTTEKIVDRIVFH 225 (279)
Q Consensus 167 ~e~i~~~~id~vV~G~d~~~~~~~~~d~~~~~k~~----G~~~~i~~~--~~ISSt~I~~rI~~~ 225 (279)
.++++.+++++++.|.+....-....+.....+.+ +.+..+... ..||||.||++|...
T Consensus 74 ~~~~~~~~~~~~~~gl~~w~d~e~~~~~~~~~r~~~~~~~~i~~~~~~~~~~ISST~IR~~i~~g 138 (159)
T PRK00168 74 VDFAREVGATVIVRGLRAVSDFEYEFQMAGMNRKLAPEIETVFLMPSPEYSFISSSLVKEVARLG 138 (159)
T ss_pred HHHHHHcCCCEEEecCcchhhHHHHHHHHHhCCCCCCCCcEEEEeCCCCcceecHHHHHHHHHcC
Confidence 88999999999999966432100000000011111 122233333 379999999999753
No 24
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=99.71 E-value=5.6e-17 Score=152.58 Aligned_cols=130 Identities=21% Similarity=0.283 Sum_probs=98.9
Q ss_pred EEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhc--CCccEEEE---cCCCC
Q psy11147 90 IVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLAC--KYVDEVVI---GAPYT 164 (279)
Q Consensus 90 iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~--k~VD~Vvi---~~p~~ 164 (279)
+|++.|+||+||.||+.+|++|+++||+|||||++|+.+...|. +| .++++|++.|+++ ++++.+.+ .+||.
T Consensus 2 ~V~vgGTFD~lH~GH~~lL~~A~~~gd~LiVgvt~D~~~~~~k~--~~-~~~e~R~~~v~~fl~~~~~~~~i~~i~D~~G 78 (322)
T PRK01170 2 ITVVGGTFSKLHKGHKALLKKAIETGDEVVIGLTSDEYVRKNKV--YP-IPYEDRKRKLENFIKKFTNKFRIRPIDDRYG 78 (322)
T ss_pred EEEEccccccCChHHHHHHHHHHHcCCEEEEEEccHHHHHhcCC--CC-CCHHHHHHHHHHHHHhcCCcEEEEecCCCCC
Confidence 69999999999999999999999999999999999999876553 57 9999999999995 67776443 56777
Q ss_pred ChHHHHHhcCCcEEEEcCCCCCCCCCCCChhHHHHhCCe----EEEe-----CCCCCCCHHHHHHHHHHhhhh
Q psy11147 165 ITADMLSQLRVDIVCRGLAAVLPDETGRDPYSEAKKLGK----FKLI-----DSGNTTTTEKIVDRIVFHRLE 228 (279)
Q Consensus 165 ~~~e~i~~~~id~vV~G~d~~~~~~~~~d~~~~~k~~G~----~~~i-----~~~~~ISSt~I~~rI~~~r~~ 228 (279)
++ +...++|++|.|.+...+.. ......+..|. ...| ..+.+||||+|++..++....
T Consensus 79 pt---~~~~~~d~IVVS~ET~~~~~---~IN~~R~e~Gl~pleIv~I~~v~~~d~~~iSSTrIr~~eid~~g~ 145 (322)
T PRK01170 79 NT---LYEEDYEIIVVSPETYQRAL---KINEIRIKNGLPPLKIVRVPYVLAEDLFPISSTRIINGEIDGNGK 145 (322)
T ss_pred CC---cccCCCCEEEEeccccccHH---HHHHHHHHCCCCceEEEEEEeEEcCCCCcccHHHHhhhhccccCC
Confidence 55 34568999999998866522 22233444553 2222 244679999999988775443
No 25
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain. Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=99.69 E-value=2.5e-16 Score=128.88 Aligned_cols=127 Identities=18% Similarity=0.219 Sum_probs=91.1
Q ss_pred EEEEcCccCCCCHHHHHHHHHHHHcC-CeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhcCC-ccEEEEcCCCC---
Q psy11147 90 IVYVDGAYDLFHPGHLDFLEKAKQAG-DYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACKY-VDEVVIGAPYT--- 164 (279)
Q Consensus 90 iV~v~G~FDlfH~GHi~~L~~A~~~g-d~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~k~-VD~Vvi~~p~~--- 164 (279)
++++.|+||++|.||+.+|++|++++ +.++|++.+++.... + +.++++.++|+++++++.. +|.|++. ++.
T Consensus 1 ~~~~~G~Fdp~H~GH~~ll~~a~~~~~~~~~v~~~~~~~~~~-~--~~~~~~~~~R~~~l~~~~~~~~~v~~~-~~~~~~ 76 (143)
T cd02039 1 VGIIIGRFEPFHLGHLKLIKEALEEALDEVIIIIVSNPPKKK-R--NKDPFSLHERVEMLKEILKDRLKVVPV-DFPEVK 76 (143)
T ss_pred CeEEeeccCCcCHHHHHHHHHHHHHcCCceEEEEcCCChhhc-c--cccCCCHHHHHHHHHHhccCCcEEEEE-ecChhh
Confidence 47899999999999999999999999 999999988865322 1 2478999999999999954 7887764 222
Q ss_pred --ChH----HHHHhcCCcEEEEcCCCCCCCCCCCChhHHHHhCCeE--EEeCC---CCCCCHHHHHHH
Q psy11147 165 --ITA----DMLSQLRVDIVCRGLAAVLPDETGRDPYSEAKKLGKF--KLIDS---GNTTTTEKIVDR 221 (279)
Q Consensus 165 --~~~----e~i~~~~id~vV~G~d~~~~~~~~~d~~~~~k~~G~~--~~i~~---~~~ISSt~I~~r 221 (279)
.+. ..+..++++++|+|.|+.++.....+. .+......+ ..++. +..||||.||+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~v~G~d~~~~~~~~~~~-~~~~~~~~~~vv~~~~~~~~~~iSSt~IR~~ 143 (143)
T cd02039 77 ILLAVVFILKILLKVGPDKVVVGEDFAFGKNASYNK-DLKELFLDIEIVEVPRVRDGKKISSTLIREL 143 (143)
T ss_pred ccCHHHHHHHHHHHcCCcEEEECCccccCCchhhhH-HHHHhCCceEEEeeEecCCCcEEehHHhhcC
Confidence 111 244568999999999999875433321 222222222 22333 368999999874
No 26
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=99.69 E-value=8.1e-17 Score=137.58 Aligned_cols=129 Identities=18% Similarity=0.259 Sum_probs=88.2
Q ss_pred CCeEEEEcCccCCCCHHHHHHHHHHHHcCC-----eEEEEEcCChhhhhc-cCCCCCCCCHHHHHHHHHhcCCccEEEEc
Q psy11147 87 TDRIVYVDGAYDLFHPGHLDFLEKAKQAGD-----YLIVGIHPDHVVAWY-KGYGYPIMNLHERVLSVLACKYVDEVVIG 160 (279)
Q Consensus 87 ~~~iV~v~G~FDlfH~GHi~~L~~A~~~gd-----~LIVgv~~D~~v~~~-Kg~~~pi~s~~ER~~~v~~~k~VD~Vvi~ 160 (279)
..+.|++.|.||++|.||+.+|++|.+.+. -+++.+.+++..... ...+..|++.+||..+++++ +||++++.
T Consensus 4 ~~~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~-Gvd~~~~~ 82 (157)
T PF06574_consen 4 NKKSVVAIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESL-GVDYVIVI 82 (157)
T ss_dssp -S-EEEEES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHT-TESEEEEE
T ss_pred CCCcEEEEeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHc-CCCEEEEe
Confidence 347899999999999999999999998873 358888888743222 22235699999999999999 89999876
Q ss_pred CCCC------ChHHHHH-----hcCCcEEEEcCCCCCCCCCCCChhHHHHhC---C-eEEEeC----CCCCCCHHH
Q psy11147 161 APYT------ITADMLS-----QLRVDIVCRGLAAVLPDETGRDPYSEAKKL---G-KFKLID----SGNTTTTEK 217 (279)
Q Consensus 161 ~p~~------~~~e~i~-----~~~id~vV~G~d~~~~~~~~~d~~~~~k~~---G-~~~~i~----~~~~ISSt~ 217 (279)
||+ .+++|++ ++++..||+|.|+.||....+|+..+.+.. | ....++ .+..||||+
T Consensus 83 -~F~~~~~~ls~~~Fi~~iL~~~l~~~~ivvG~DfrFG~~~~G~~~~L~~~~~~~g~~v~~v~~~~~~~~~ISStr 157 (157)
T PF06574_consen 83 -PFTEEFANLSPEDFIEKILKEKLNVKHIVVGEDFRFGKNRSGDVELLKELGKEYGFEVEVVPPVKIDGEKISSTR 157 (157)
T ss_dssp --CCCHHCCS-HHHHHHHHCCCHCTEEEEEEETT-EESGGGEEEHHHHHHCTTTT-SEEEEE---EETTEE-SHHH
T ss_pred -cchHHHHcCCHHHHHHHHHHhcCCccEEEEccCccCCCCCCCCHHHHHHhcccCceEEEEECCEEcCCcEeCCCC
Confidence 565 5667775 579999999999999987777876554443 2 233343 457899985
No 27
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=99.68 E-value=3e-16 Score=146.04 Aligned_cols=133 Identities=12% Similarity=0.087 Sum_probs=100.4
Q ss_pred EEEcCccCCCCHHHHHHHHHHHHcCC-----eEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhcCCccEEEEcCCCC-
Q psy11147 91 VYVDGAYDLFHPGHLDFLEKAKQAGD-----YLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACKYVDEVVIGAPYT- 164 (279)
Q Consensus 91 V~v~G~FDlfH~GHi~~L~~A~~~gd-----~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~k~VD~Vvi~~p~~- 164 (279)
|++.|.||++|.||+.+|++|++.++ -+++.+.+++...........+++++||...++++ +||.+++. ||+
T Consensus 1 ~vaiG~FDGvH~GHq~Li~~~~~~a~~~~~~~~V~tF~phP~~~~~~~~~~~l~~~~~k~~~l~~~-Gvd~~~~~-~F~~ 78 (288)
T TIGR00083 1 SLAIGYFDGLHLGHQALLQELKQIAEEKGLPPAVLLFEPHPSEQFNWLTAPALTPLEDKARQLQIK-GVEQLLVV-VFDE 78 (288)
T ss_pred CEEEEeCCccCHHHHHHHHHHHHHHHHhCCCEEEEEeCCChHHHhCccCCCCCCCHHHHHHHHHHc-CCCEEEEe-CCCH
Confidence 47889999999999999999987653 46888888875322211112399999999999999 89999987 675
Q ss_pred -----ChHHHHH-----hcCCcEEEEcCCCCCCCCCCCChhHHHHhC---Ce-EEEeC---CCCCCCHHHHHHHHHHh
Q psy11147 165 -----ITADMLS-----QLRVDIVCRGLAAVLPDETGRDPYSEAKKL---GK-FKLID---SGNTTTTEKIVDRIVFH 225 (279)
Q Consensus 165 -----~~~e~i~-----~~~id~vV~G~d~~~~~~~~~d~~~~~k~~---G~-~~~i~---~~~~ISSt~I~~rI~~~ 225 (279)
++++|++ .+++..||+|.|+.||....+|+..+.+.. |. ...++ .+..||||.||+.|.+-
T Consensus 79 ~~a~ls~e~Fi~~~l~~~l~~~~ivvG~Df~FG~~~~G~~~~L~~~~~~~g~~v~~~~~~~~~~~ISST~IR~~l~~G 156 (288)
T TIGR00083 79 EFANLSALQFIDQLIVKHLHVKFLVVGDDFRFGHDRQGDFLLLQLFGNTTIFCVIVKQLFCQDIRISSSAIRQALKNG 156 (288)
T ss_pred HHHcCCHHHHHHHHHHhccCCcEEEECCCccCCCCCCCCHHHHHHhccccCcEEEEeccccCCCeECHHHHHHHHHcC
Confidence 5566663 478999999999999988888886555442 31 12222 23789999999998753
No 28
>PLN02388 phosphopantetheine adenylyltransferase
Probab=99.65 E-value=1.3e-15 Score=132.45 Aligned_cols=137 Identities=18% Similarity=0.281 Sum_probs=98.8
Q ss_pred CCCCCeEEEEcCccCCCCHHHHHHHHHHHHcCC-eEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhc-CC------cc
Q psy11147 84 PKPTDRIVYVDGAYDLFHPGHLDFLEKAKQAGD-YLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLAC-KY------VD 155 (279)
Q Consensus 84 ~~~~~~iV~v~G~FDlfH~GHi~~L~~A~~~gd-~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~-k~------VD 155 (279)
+......|++.|+||++|.||+.+|++|.++|. .++|||.+|+.... |.....|+++++|...|+++ .- ++
T Consensus 15 ~~~~~~~Vv~gGtFDgLH~GHq~LL~~A~~~a~~~vvIgft~~p~l~~-k~~~~~I~~~e~R~~~l~~fl~~~~p~~~~~ 93 (177)
T PLN02388 15 PPNSYGAVVLGGTFDRLHDGHRLFLKAAAELARDRIVIGVCDGPMLSK-KQFAELIQPIEERMHNVEEYIKSIKPELVVQ 93 (177)
T ss_pred CCCcCCeEEEEecCCccCHHHHHHHHHHHHhhhcCEEEecCCChhhcc-cCCCcccCCHHHHHHHHHHHHHHcCCCceEE
Confidence 333457899999999999999999999999995 89999999997633 33345799999999998875 11 22
Q ss_pred EEEEcCCCCChHHHHHhcCCcEEEEcCCCCCCCCCCCChhHHHHhCCe--E--EE---e--C-CCCCCCHHHHHHHHHHh
Q psy11147 156 EVVIGAPYTITADMLSQLRVDIVCRGLAAVLPDETGRDPYSEAKKLGK--F--KL---I--D-SGNTTTTEKIVDRIVFH 225 (279)
Q Consensus 156 ~Vvi~~p~~~~~e~i~~~~id~vV~G~d~~~~~~~~~d~~~~~k~~G~--~--~~---i--~-~~~~ISSt~I~~rI~~~ 225 (279)
.+-|.+||+++ +..-++|++|++.+...+.. ......+..|. + .. + + .+.+||||+||+|+.++
T Consensus 94 i~~i~D~~Gpt---~~~~~~d~LVVS~ET~~g~~---~IN~~R~e~Gl~pL~i~~v~~v~~~~~~~kiSST~iR~~~~~~ 167 (177)
T PLN02388 94 AEPIIDPYGPS---IVDENLEAIVVSKETLPGGL---SVNKKRAERGLSQLKIEVVDIVPEESTGNKLSSTTLRRLEAEK 167 (177)
T ss_pred EEEecCCCCCc---ccCCCCCEEEEcHhHhhhHH---HHHHHHHHCCCCCeEEEEEEeEecCCCCCccCHHHHHHHHHHH
Confidence 33467888876 22457999999998766522 22233444552 1 12 2 2 35899999999998876
Q ss_pred hh
Q psy11147 226 RL 227 (279)
Q Consensus 226 r~ 227 (279)
..
T Consensus 168 ~~ 169 (177)
T PLN02388 168 AV 169 (177)
T ss_pred HH
Confidence 53
No 29
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=99.64 E-value=5.3e-15 Score=127.47 Aligned_cols=145 Identities=21% Similarity=0.207 Sum_probs=104.9
Q ss_pred EEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHH-HhcCCcc-E-EEEcCCCC--C
Q psy11147 91 VYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSV-LACKYVD-E-VVIGAPYT--I 165 (279)
Q Consensus 91 V~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v-~~~k~VD-~-Vvi~~p~~--~ 165 (279)
+++.|+||+||.||+.++++|++.+|.|+|+|.++.. ..|.. .| ++.+||++++ ++++.++ . +.+. |.. .
T Consensus 2 gl~~G~FdP~H~GHl~ii~~a~~~~D~lii~i~s~~~--~~k~~-~p-~~~~eR~~mi~~al~~~~~~~~~~v-P~~d~~ 76 (165)
T TIGR01527 2 GFYIGRFQPFHLGHLEVIKKIAEEVDELIIGIGSAQE--SHTLE-NP-FTAGERILMITQSLKEVGDLTYYII-PIEDIE 76 (165)
T ss_pred eEEEeccCCCCHHHHHHHHHHHHHCCEEEEEEcCCCC--CCCCC-CC-CCHHHHHHHHHHHHhcCCCceEEEE-ecCCcc
Confidence 6789999999999999999999999999999988764 22332 24 5779999999 4567664 3 2221 211 1
Q ss_pred hHHHHHhc------CCcEEEEcCCCCCCCCCCCChhHHHHhCCeE-EEeC---CCCCCCHHHHHHHHHH--hhhhhhhhh
Q psy11147 166 TADMLSQL------RVDIVCRGLAAVLPDETGRDPYSEAKKLGKF-KLID---SGNTTTTEKIVDRIVF--HRLEFERRN 233 (279)
Q Consensus 166 ~~e~i~~~------~id~vV~G~d~~~~~~~~~d~~~~~k~~G~~-~~i~---~~~~ISSt~I~~rI~~--~r~~y~~Rn 233 (279)
..+.+..+ .+|+|+.|... ...+.+..|.- ...+ + ..+|+|.||++|.+ +|++++...
T Consensus 77 ~~~~w~~~v~~~~p~~D~vf~~~~~---------~~~~f~e~g~~v~~~p~~~r-~~~S~T~IR~~i~~~~~W~~lVP~~ 146 (165)
T TIGR01527 77 RNSIWVSYVESMTPPFDVVYSNNPL---------VRRLFKEAGYEVKRPPMFNR-KEYSGTEIRRRMLNGEDWEHLVPKA 146 (165)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCHH---------HHHHHHHcCCEEEECCCcCC-CcccHHHHHHHHHcCCChhhhCCHH
Confidence 22334444 88999999422 12344555543 2233 4 48999999999986 799999999
Q ss_pred hhhhHHHHHHHHHHHhc
Q psy11147 234 FEKENKEMKLIELIESS 250 (279)
Q Consensus 234 ~~K~~ke~~~~~~~~~~ 250 (279)
..+-.+|++..++++..
T Consensus 147 v~~~i~~i~~~~r~~~~ 163 (165)
T TIGR01527 147 VADVIKEIKGVERLRKI 163 (165)
T ss_pred HHHHHHHcCcHHHHHHh
Confidence 99999999999888764
No 30
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=99.62 E-value=2.4e-16 Score=129.81 Aligned_cols=126 Identities=28% Similarity=0.383 Sum_probs=83.7
Q ss_pred EEcCccCCCCHHHHHHHHHHHHcCCe-EEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhcCCccE--------------
Q psy11147 92 YVDGAYDLFHPGHLDFLEKAKQAGDY-LIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACKYVDE-------------- 156 (279)
Q Consensus 92 ~v~G~FDlfH~GHi~~L~~A~~~gd~-LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~k~VD~-------------- 156 (279)
+++|+||++|.||+.+|++|++.++. +|+++.++.... |.. +++++.++|+++++.+..++.
T Consensus 1 l~~GsFdP~H~GH~~~l~~a~~~~~~~~vi~v~~~~~~~--k~~-~~~~~~~~R~~ml~~~~~~~~~i~v~~~e~~~~~~ 77 (157)
T PF01467_consen 1 LFGGSFDPPHNGHLNLLREARELFDEDLVIVVPSDNSPH--KDK-KPIFSFEERLEMLRAAFKDDPNIEVDDWELEQDKK 77 (157)
T ss_dssp EEEE--TT--HHHHHHHHHHHHHSSESEEEEEEEEHHCH--STT-SSSSTHHHHHHHHHHHHTTCTTEEEEEEHHHSSHH
T ss_pred CeeeEcCcccHHHHHHHHHHHHhcccccccccccccccc--ccc-cccCcHHHHHHHHHHHHhhcCCccccchhHHhHhh
Confidence 57899999999999999999999995 677777776432 221 378999999999998766655
Q ss_pred --------EEEcCC-------CCChHHHHHhcCCcEEEEcCCCCCCCCCCCChhHHHHhCCe-EEEeCCCCCCCHHHHHH
Q psy11147 157 --------VVIGAP-------YTITADMLSQLRVDIVCRGLAAVLPDETGRDPYSEAKKLGK-FKLIDSGNTTTTEKIVD 220 (279)
Q Consensus 157 --------Vvi~~p-------~~~~~e~i~~~~id~vV~G~d~~~~~~~~~d~~~~~k~~G~-~~~i~~~~~ISSt~I~~ 220 (279)
++++++ |....++++.+++.++.++.+....... .+.+......+. +........||||.||+
T Consensus 78 ~~~~~~~~~v~g~D~~~~~~~~~~~~~~~~~~~~~v~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~iSST~IR~ 156 (157)
T PF01467_consen 78 KYPDVKIYFVIGADNLRNFPKWRDWQEILKEVNIIVVSRGGDDPIETIS-DDEILEKYPLGIIFILDPPRNEISSTEIRE 156 (157)
T ss_dssp HSTSSCEEEEEECTHHEEEEESTTHHHHHHHHHEEEEEHHHTTTHEEEE-HCHHHHHTTCEEEEEEEGGGTTSSHHHHHH
T ss_pred hccccccceeccCCceeeecCCCcHHHHHHhCCEEEEEcCCCCccchhh-hccccccccceeEEEecCCCCccCHHHHhc
Confidence 677776 6667788888899988888654321110 112211112222 22233445699999998
Q ss_pred H
Q psy11147 221 R 221 (279)
Q Consensus 221 r 221 (279)
|
T Consensus 157 ~ 157 (157)
T PF01467_consen 157 R 157 (157)
T ss_dssp H
T ss_pred C
Confidence 7
No 31
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.61 E-value=5.6e-15 Score=124.13 Aligned_cols=128 Identities=20% Similarity=0.206 Sum_probs=89.9
Q ss_pred CeEEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHh-cCCccEEEEcCC-CCC
Q psy11147 88 DRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLA-CKYVDEVVIGAP-YTI 165 (279)
Q Consensus 88 ~~iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~-~k~VD~Vvi~~p-~~~ 165 (279)
|++++++|+|||+|.||++++++|.+++|.|+|++..++ .| .++++.++|+.+++. ++..+.|.+... -++
T Consensus 1 mkiai~~GSFDPih~GHl~ii~~A~~~~D~v~v~v~~np----~K---~~~~s~e~R~~~l~~~~~~~~~v~v~~~~~~l 73 (140)
T PRK13964 1 MKIAIYPGSFDPFHKGHLNILKKALKLFDKVYVVVSINP----DK---SNASDLDSRFKNVKNKLKDFKNVEVLINENKL 73 (140)
T ss_pred CeEEEEeeeeCCCCHHHHHHHHHHHHhCCEEEEEeccCC----CC---CCCCCHHHHHHHHHHHHcCCCCcEEecCcCCc
Confidence 468999999999999999999999999999999998774 34 368999999999865 455566655422 257
Q ss_pred hHHHHHhcCCcEEEEcCCCCCCCCCCCChhHHHHhCC-eEEE---e--CCCCCCCHHHHHHHH
Q psy11147 166 TADMLSQLRVDIVCRGLAAVLPDETGRDPYSEAKKLG-KFKL---I--DSGNTTTTEKIVDRI 222 (279)
Q Consensus 166 ~~e~i~~~~id~vV~G~d~~~~~~~~~d~~~~~k~~G-~~~~---i--~~~~~ISSt~I~~rI 222 (279)
+.+++++.+++++|+|-....+-.-+-......+... .... . +....||||.|++-.
T Consensus 74 ~v~~~~~~~a~~ivrGlR~~~DfeyE~~~a~~n~~l~~~ietvfl~~~~~~~~iSSs~vre~~ 136 (140)
T PRK13964 74 TAEIAKKLGANFLIRSARNNIDFQYEIVLAAGNKSLNNDLETILIIPDYDKIEYSSTLLRHKK 136 (140)
T ss_pred HHHHHHHCCCeEEEEecCCCccHHHHHHHHHHHHhhcCCCeEEEeecCCCCCEEeHHHHHHHH
Confidence 7889999999999999865322100000111122221 1111 1 345789999998754
No 32
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=99.60 E-value=1.7e-14 Score=135.07 Aligned_cols=137 Identities=15% Similarity=0.181 Sum_probs=102.3
Q ss_pred CeEEEEcCccCCCCHHHHHHHHHHHHcCC-----eEEEEEcCChhhhhcc-CCCCCCCCHHHHHHHHHhcCCccEEEEcC
Q psy11147 88 DRIVYVDGAYDLFHPGHLDFLEKAKQAGD-----YLIVGIHPDHVVAWYK-GYGYPIMNLHERVLSVLACKYVDEVVIGA 161 (279)
Q Consensus 88 ~~iV~v~G~FDlfH~GHi~~L~~A~~~gd-----~LIVgv~~D~~v~~~K-g~~~pi~s~~ER~~~v~~~k~VD~Vvi~~ 161 (279)
..+|++.|.||++|.||+.+|++|++.+. -+|+.+.+.+...... .....++++++|++.+..+ +||.+++.
T Consensus 15 ~~~~l~IG~FDGvHlGHq~ll~~a~~~a~~~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k~~~l~~~-gvd~~~v~- 92 (304)
T COG0196 15 RGCVLTIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLLAGY-GVDALVVL- 92 (304)
T ss_pred CCcEEEEEcCCccchhHHHHHHHHHHHHHHhCCceEEEEecCCCHHHcCCCCCccccCCHHHHHHHHHhc-CCcEEEEE-
Confidence 36799999999999999999999997664 3577887766432211 1123489999999999999 89999886
Q ss_pred CCC------ChHHHHH----hcCCcEEEEcCCCCCCCCCCCChhHHHHhCC---eEEEeC----CCCCCCHHHHHHHHHH
Q psy11147 162 PYT------ITADMLS----QLRVDIVCRGLAAVLPDETGRDPYSEAKKLG---KFKLID----SGNTTTTEKIVDRIVF 224 (279)
Q Consensus 162 p~~------~~~e~i~----~~~id~vV~G~d~~~~~~~~~d~~~~~k~~G---~~~~i~----~~~~ISSt~I~~rI~~ 224 (279)
+|+ ++.+|++ .++++.||+|.|+.||....+++..+..... ....++ .+..||||.||+.+.+
T Consensus 93 ~F~~~fa~ls~~~Fv~~lv~~l~~k~ivvG~DF~FGk~~~g~~~~L~~~~~~gf~v~~v~~~~~~~~~iSSt~IR~~L~~ 172 (304)
T COG0196 93 DFDLEFANLSAEEFVELLVEKLNVKHIVVGFDFRFGKGRQGNAELLRELGQKGFEVTIVPKINEEGIRISSTAIRQALRE 172 (304)
T ss_pred eCCHhHhhCCHHHHHHHHHhccCCcEEEEecccccCCCCCCCHHHHHHhccCCceEEEeccEecCCcEEchHHHHHHHhc
Confidence 566 4566665 7899999999999999887777754444332 223343 3357999999999875
Q ss_pred hh
Q psy11147 225 HR 226 (279)
Q Consensus 225 ~r 226 (279)
..
T Consensus 173 gd 174 (304)
T COG0196 173 GD 174 (304)
T ss_pred CC
Confidence 43
No 33
>cd02163 PPAT Phosphopantetheine adenylyltransferase. Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.
Probab=99.59 E-value=6.5e-15 Score=125.03 Aligned_cols=128 Identities=25% Similarity=0.321 Sum_probs=92.5
Q ss_pred EEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHh-cCCccEEEEcCCCCChHH
Q psy11147 90 IVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLA-CKYVDEVVIGAPYTITAD 168 (279)
Q Consensus 90 iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~-~k~VD~Vvi~~p~~~~~e 168 (279)
+++++|+||++|.||+.++++|.+.+|.|+|+++.++ .| .+.++.++|+++++. ++.++.+.+..-...+.+
T Consensus 1 i~i~gGsFdP~H~GHl~l~~~a~~~~d~v~v~~~~~~----~k---~~~~~~~~R~~ml~~a~~~~~~~~v~~~es~t~~ 73 (153)
T cd02163 1 IAVYPGSFDPITNGHLDIIERASKLFDEVIVAVAVNP----SK---KPLFSLEERVELIREATKHLPNVEVDGFDGLLVD 73 (153)
T ss_pred CEEEEeccCCCCHHHHHHHHHHHHHCCEEEEEEcCCC----CC---CCCCCHHHHHHHHHHHHcCCCCEEecCCcchHHH
Confidence 4688999999999999999999999999999998764 24 368999999999997 688898887632236788
Q ss_pred HHHhcCCcEEEEcCCCCCCCCCCCChhHHH-HhC----CeEEEeCCC--CCCCHHHHHHHHHHh
Q psy11147 169 MLSQLRVDIVCRGLAAVLPDETGRDPYSEA-KKL----GKFKLIDSG--NTTTTEKIVDRIVFH 225 (279)
Q Consensus 169 ~i~~~~id~vV~G~d~~~~~~~~~d~~~~~-k~~----G~~~~i~~~--~~ISSt~I~~rI~~~ 225 (279)
+++.++.+++++|.|....-.. ...+... +.+ ..+..+... ..||||.||+++...
T Consensus 74 ~l~~l~~~~~i~G~d~~~~~e~-~~~~~~~~r~~~~~~~~i~~~~~~~~~~iSST~IR~~~~~g 136 (153)
T cd02163 74 FARKHGANVIVRGLRAVSDFEY-EFQMAGMNRKLAPEIETVFLMASPEYSFISSSLVKEIARFG 136 (153)
T ss_pred HHHHcCCCEEEECCcchhhHHH-HHHHHHhCCCCCCCCcEEEEeCCCccceecHHHHHHHHHcC
Confidence 9999999999999764332100 0000001 111 123333333 359999999999864
No 34
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=99.58 E-value=5.5e-15 Score=124.54 Aligned_cols=124 Identities=21% Similarity=0.287 Sum_probs=87.9
Q ss_pred EEEcCccCCCCHHHHHHHHHHHHcC-CeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhc-CCc----c--EEEEcCC
Q psy11147 91 VYVDGAYDLFHPGHLDFLEKAKQAG-DYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLAC-KYV----D--EVVIGAP 162 (279)
Q Consensus 91 V~v~G~FDlfH~GHi~~L~~A~~~g-d~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~-k~V----D--~Vvi~~p 162 (279)
|++.|+||++|.||+.+|++|.+++ +.++||+..|+... .|....+++++++|+++++.+ ..+ . -+-+.+|
T Consensus 2 v~~GGtFD~lH~GH~~Ll~~a~~~~~d~v~vgvt~d~~~~-~k~~~~~i~s~e~R~~~l~~~l~~~~~~~~~~i~~i~d~ 80 (143)
T cd02164 2 VAVGGTFDRLHDGHKILLSVAFLLAGEKLIIGVTSDELLK-NKSLKELIEPYEERIANLHEFLVDLKPTLKYEIVPIDDP 80 (143)
T ss_pred EEEcccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCchhcc-cCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEccCC
Confidence 7889999999999999999999998 78999999998442 233224689999999998875 222 2 2335778
Q ss_pred CCChHHHHHhcCCcEEEEcCCCCCCCCCCCChhHHHHhCCe-----EE--Ee---CCCCCCCHHHHHHH
Q psy11147 163 YTITADMLSQLRVDIVCRGLAAVLPDETGRDPYSEAKKLGK-----FK--LI---DSGNTTTTEKIVDR 221 (279)
Q Consensus 163 ~~~~~e~i~~~~id~vV~G~d~~~~~~~~~d~~~~~k~~G~-----~~--~i---~~~~~ISSt~I~~r 221 (279)
|+++. ..-.+|++|+..+...+. .......+..|. +. .+ +.+.+||||.||++
T Consensus 81 ~Gpt~---~~~~~d~lVVS~ET~~~~---~~iN~~R~~~gl~pl~i~~v~~v~~~~~~~kiSST~iR~~ 143 (143)
T cd02164 81 YGPTG---TDPDLEAIVVSPETYPGA---LKINRKREENGLSPLEIVVVPLVKADEDGEKISSTRIRRG 143 (143)
T ss_pred CCCcc---cCCCCCEEEEcHHHhhhH---HHHHHHHHHCCCCceeEEEEEeeccCCCCCeecchhhhCc
Confidence 88662 235789999998765542 222333444552 11 13 35689999999863
No 35
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=99.58 E-value=7.8e-15 Score=124.18 Aligned_cols=123 Identities=24% Similarity=0.316 Sum_probs=91.8
Q ss_pred CeEEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhc-CCccEEEEcCCCCCh
Q psy11147 88 DRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLAC-KYVDEVVIGAPYTIT 166 (279)
Q Consensus 88 ~~iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~-k~VD~Vvi~~p~~~~ 166 (279)
+++++++|+|||+|.||+++|++|.+++|.|||+|..++ .| +|+++++||+++++.. +..+.|-+..--++.
T Consensus 2 ~~iavypGSFDPiTnGHlDii~RA~~~Fd~viVaV~~np----~K---~plFsleER~~l~~~~~~~l~nV~V~~f~~Ll 74 (159)
T COG0669 2 MKIAVYPGSFDPITNGHLDIIKRASALFDEVIVAVAINP----SK---KPLFSLEERVELIREATKHLPNVEVVGFSGLL 74 (159)
T ss_pred CeeEEeCCCCCCCccchHHHHHHHHHhccEEEEEEEeCC----Cc---CCCcCHHHHHHHHHHHhcCCCceEEEecccHH
Confidence 578999999999999999999999999999999999876 35 4899999999999874 667777665322478
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCCCCCChhHH-----HHhC-Ce---EEEeC--CCCCCCHHHHHHHH
Q psy11147 167 ADMLSQLRVDIVCRGLAAVLPDETGRDPYSE-----AKKL-GK---FKLID--SGNTTTTEKIVDRI 222 (279)
Q Consensus 167 ~e~i~~~~id~vV~G~d~~~~~~~~~d~~~~-----~k~~-G~---~~~i~--~~~~ISSt~I~~rI 222 (279)
.+++++.++.++|+|.....+ =.|++ .+.. +. +...+ ....||||.+++-.
T Consensus 75 vd~ak~~~a~~ivRGLR~~sD-----feYE~qma~~N~~L~~eveTvFl~~s~~~~~iSSs~Vreia 136 (159)
T COG0669 75 VDYAKKLGATVLVRGLRAVSD-----FEYELQMAHMNRKLAPEVETVFLMPSPEYSFISSSLVREIA 136 (159)
T ss_pred HHHHHHcCCCEEEEeccccch-----HHHHHHHHHHHHhhcccccEEEecCCcceehhhHHHHHHHH
Confidence 899999999999999864321 11222 2222 11 22223 33688999887743
No 36
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=99.55 E-value=1.1e-14 Score=105.50 Aligned_cols=65 Identities=49% Similarity=0.705 Sum_probs=58.0
Q ss_pred EEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhcCCccE
Q psy11147 90 IVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACKYVDE 156 (279)
Q Consensus 90 iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~k~VD~ 156 (279)
++++.|+||++|.||+.+|++|+++++.++|++.+|+..+..|. .++++.++|.+++++|.++|.
T Consensus 1 i~~~~G~Fdp~H~GH~~~l~~a~~~~~~~vv~i~~~~~~~~~~~--~~~~~~~~R~~~~~~~~~~~~ 65 (66)
T TIGR00125 1 RVIFVGTFDPFHLGHLDLLERAKELFDELIVGVGSDQFVNPLKG--EPVFSLEERLEMLKALKYVDE 65 (66)
T ss_pred CEEEcCccCCCCHHHHHHHHHHHHhCCEEEEEECchHhccccCC--CCCCCHHHHHHHHHHhccccC
Confidence 58899999999999999999999999999999999887766554 389999999999999987763
No 37
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.
Probab=99.49 E-value=4.7e-13 Score=113.76 Aligned_cols=129 Identities=23% Similarity=0.282 Sum_probs=86.1
Q ss_pred EEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhc-CCccEEEEcCCCCChHH
Q psy11147 90 IVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLAC-KYVDEVVIGAPYTITAD 168 (279)
Q Consensus 90 iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~-k~VD~Vvi~~p~~~~~e 168 (279)
+++++|+||++|.||+.++++|++.+|.|+|+++.++ .| .+..+.++|+++++.+ ..-+.+.+..--..+.+
T Consensus 1 i~l~gGsFdP~H~GHl~l~~~a~~~~d~v~~~~~~~p----~k---~~~~~~~~R~~m~~~a~~~~~~~~v~~~e~yt~d 73 (155)
T TIGR01510 1 IALYPGSFDPVTNGHLDIIKRAAALFDEVIVAVAKNP----SK---KPLFSLEERVELIKDATKHLPNVRVDVFDGLLVD 73 (155)
T ss_pred CEEEEeecCCCcHHHHHHHHHHHHhCCEEEEEEcCCC----CC---CCCcCHHHHHHHHHHHHhhCCCeEEcCccchHHH
Confidence 4789999999999999999999999999999987543 34 2678999999999976 33334444321146788
Q ss_pred HHHhcCCcEEEEcCCCCCCCCCCCChhHHHHh----CCeEEEeCCC--CCCCHHHHHHHHHHh
Q psy11147 169 MLSQLRVDIVCRGLAAVLPDETGRDPYSEAKK----LGKFKLIDSG--NTTTTEKIVDRIVFH 225 (279)
Q Consensus 169 ~i~~~~id~vV~G~d~~~~~~~~~d~~~~~k~----~G~~~~i~~~--~~ISSt~I~~rI~~~ 225 (279)
.++.++.++++.|.|....-........+.+. ......+... ..||||.||+++...
T Consensus 74 t~~~l~~~~~i~G~~~~~~~~~~~~~~~~~r~~~~~~~~i~~~~~~~~~~iSST~IR~~i~~g 136 (155)
T TIGR01510 74 YAKELGATFIVRGLRAATDFEYELQMALMNKHLAPEIETVFLMASPEYAFVSSSLVKEIASFG 136 (155)
T ss_pred HHHHcCCCEEEecCcchhhHHHHHHHHhhCcccccCCcEEEEeCCcchhhccHHHHHHHHHcC
Confidence 99999999999997543211000000000000 1112222322 379999999999764
No 38
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=99.49 E-value=2e-13 Score=117.10 Aligned_cols=136 Identities=20% Similarity=0.148 Sum_probs=86.0
Q ss_pred EEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHH-hcCCcc----EEEEc--CCC
Q psy11147 91 VYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVL-ACKYVD----EVVIG--APY 163 (279)
Q Consensus 91 V~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~-~~k~VD----~Vvi~--~p~ 163 (279)
+++.|+||+||.||+.++++|.+.+|.|+|+|.++... .+. ..-++.+||+++++ +++.+| .|.+. ...
T Consensus 2 ~v~~G~FdP~H~GHl~~i~~a~~~~d~l~v~v~s~~~~--~~~--~~~~~~~~R~~mi~~~~~~~~~~~~~v~v~~~~d~ 77 (163)
T cd02166 2 ALFIGRFQPFHLGHLKVIKWILEEVDELIIGIGSAQES--HTL--ENPFTAGERVLMIRRALEEEGIDLSRYYIIPVPDI 77 (163)
T ss_pred eEEeeccCCCCHHHHHHHHHHHHHCCEEEEEecCCCCC--CCC--CCCCCHHHHHHHHHHHHHhcCCCcCeEEEEecCCC
Confidence 67899999999999999999999999999999765432 122 23478899999999 567765 44432 122
Q ss_pred CChHHHHHhc------CCcEEEEcCCCCCCCCCCCChhHHHHhCCeE-EEeCC--CCCCCHHHHHHHHHH--hhhhhhhh
Q psy11147 164 TITADMLSQL------RVDIVCRGLAAVLPDETGRDPYSEAKKLGKF-KLIDS--GNTTTTEKIVDRIVF--HRLEFERR 232 (279)
Q Consensus 164 ~~~~e~i~~~------~id~vV~G~d~~~~~~~~~d~~~~~k~~G~~-~~i~~--~~~ISSt~I~~rI~~--~r~~y~~R 232 (279)
... +.+.++ .+|+++.|.++.. ......|.. ..++. .+.+|+|.||+++.+ .+..++..
T Consensus 78 ~~~-~~w~~~v~~~vp~~div~~g~~~~~---------~~f~~~g~~v~~~p~~~~~~~s~t~iR~~~~~~~~~~~~vp~ 147 (163)
T cd02166 78 ERN-SLWVSYVESLTPPFDVVYSGNPLVA---------RLFKEAGYEVRRPPMFNREEYSGTEIRRLMLGGEDWEELVPK 147 (163)
T ss_pred Cch-HHHHHHHHHHCCCCCEEEECchHHH---------HhhhhcCCeEecCCcccCCCCCHHHHHHHHHcCCchhhcCCH
Confidence 222 323333 6799998864321 111223432 23444 357999999999863 34444443
Q ss_pred hhhhhHHH
Q psy11147 233 NFEKENKE 240 (279)
Q Consensus 233 n~~K~~ke 240 (279)
-......+
T Consensus 148 ~v~~~l~~ 155 (163)
T cd02166 148 SVAEVIKE 155 (163)
T ss_pred HHHHHHHH
Confidence 33333333
No 39
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=99.46 E-value=3.7e-13 Score=113.44 Aligned_cols=130 Identities=21% Similarity=0.236 Sum_probs=95.3
Q ss_pred CeEEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhc---CCc--c-EEEEcC
Q psy11147 88 DRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLAC---KYV--D-EVVIGA 161 (279)
Q Consensus 88 ~~iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~---k~V--D-~Vvi~~ 161 (279)
...|.+.|+||.+|.||..||+.|..+|+.+++|+++|+.+..+|. +++.+++.|++-|..+ ..- + .|-+.+
T Consensus 5 fm~vavGGTFd~LH~GHk~LL~~A~~~G~~v~IGlTsDe~~k~~k~--~~i~p~~~R~~~l~~fl~~~~~~~~~iv~i~D 82 (158)
T COG1019 5 FMKVAVGGTFDRLHDGHKKLLEVAFEIGDRVTIGLTSDELAKKKKK--EKIEPYEVRLRNLRNFLESIKADYEEIVPIDD 82 (158)
T ss_pred ceEEEecccchhhhhhHHHHHHHHHHhCCeEEEEEccHHHHHHhcc--ccCCcHHHHHHHHHHHHHHhcCCcceEEEecC
Confidence 4578999999999999999999999999999999999999877543 6899999999877653 121 2 234678
Q ss_pred CCCChHHHHHhcCCcEEEEcCCCCCCCCCCCChhHHHHhCCe----EEEe-----CCCCCCCHHHHHHHHHHh
Q psy11147 162 PYTITADMLSQLRVDIVCRGLAAVLPDETGRDPYSEAKKLGK----FKLI-----DSGNTTTTEKIVDRIVFH 225 (279)
Q Consensus 162 p~~~~~e~i~~~~id~vV~G~d~~~~~~~~~d~~~~~k~~G~----~~~i-----~~~~~ISSt~I~~rI~~~ 225 (279)
||+.+ +..-.++++|+..+...+. ....+.....|. ...| +.+.+||||+|++-.++.
T Consensus 83 p~G~t---~~~~~~e~iVVS~ET~~~A---l~IN~~R~~~Gl~pL~I~~i~~v~aedg~~iSSTrIrrgeId~ 149 (158)
T COG1019 83 PYGPT---VEDPDFEAIVVSPETYPGA---LKINEIREKRGLPPLEIIVIDYVLAEDGKPISSTRIRRGEIDE 149 (158)
T ss_pred CCCCC---CCcCceeEEEEccccchhH---HHHHHHHHHCCCCCeEEEEEehhhhhcCCccchhhhhhhccCc
Confidence 88876 3344678999888755432 123334444552 2223 366899999999766553
No 40
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.43 E-value=2.7e-12 Score=120.15 Aligned_cols=129 Identities=13% Similarity=0.137 Sum_probs=93.0
Q ss_pred CCeEEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhc-CCccEEEEcCC---
Q psy11147 87 TDRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLAC-KYVDEVVIGAP--- 162 (279)
Q Consensus 87 ~~~iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~-k~VD~Vvi~~p--- 162 (279)
.++++.+.|+|||+|.||+.++++|.+.+|.++|.+-+. + .+.++.++|+++++.+ +..+.+.+...
T Consensus 113 ~~~~~~~~~~FDPiH~GHl~ii~~a~~~~d~~~V~i~~~------~---~~~~~~e~R~~ml~~ai~~~~~v~v~~~~~l 183 (297)
T cd02169 113 GKKIAAIVMNANPFTLGHRYLVEKAAAENDWVHLFVVSE------D---KSLFSFADRFKLVKKGTKHLKNVTVHSGGDY 183 (297)
T ss_pred CCceEEEEecCCCCchHHHHHHHHHHhhCCeEEEEEEcC------C---CCCCCHHHHHHHHHHHhCCCCCEEEEecCCe
Confidence 358899999999999999999999999999777777653 1 3678999999998864 44333322111
Q ss_pred ------CC-----------------ChHHHH----HhcCCcEEEEcCCCCCCCCCCCChhHHHHhC---Ce-EEEeC---
Q psy11147 163 ------YT-----------------ITADML----SQLRVDIVCRGLAAVLPDETGRDPYSEAKKL---GK-FKLID--- 208 (279)
Q Consensus 163 ------~~-----------------~~~e~i----~~~~id~vV~G~d~~~~~~~~~d~~~~~k~~---G~-~~~i~--- 208 (279)
|. .+++|+ +.+++..||+|.|+.||....+|. .+.+.+ |. ...++
T Consensus 184 ~v~~~~~~~~~~~~~~~~~~~~a~lsa~~Fi~iL~~~l~~~~ivvG~Df~FG~~r~G~~-~l~~~~~~~gf~v~~v~~~~ 262 (297)
T cd02169 184 IISSATFPSYFIKEQDVVIKAQTALDARIFRKYIAPALNITKRYVGEEPFSRVTAIYNQ-TMQEELLSPAIEVIEIERKK 262 (297)
T ss_pred eeccccChhhhcCChhHHHHHHhcCCHHHHHHHHHHHcCCcEEEEcCCCCCCCcchhHH-HHHHhcccCCCEEEEecccc
Confidence 11 345565 457999999999999998766774 333332 21 22333
Q ss_pred -CCCCCCHHHHHHHHHHh
Q psy11147 209 -SGNTTTTEKIVDRIVFH 225 (279)
Q Consensus 209 -~~~~ISSt~I~~rI~~~ 225 (279)
.+..||||.||+.|.+-
T Consensus 263 ~~g~~ISST~IR~~l~~G 280 (297)
T cd02169 263 YDGQPISASTVRQLLKEG 280 (297)
T ss_pred cCCcEEcHHHHHHHHHcC
Confidence 45799999999999753
No 41
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=99.37 E-value=1.5e-11 Score=107.58 Aligned_cols=122 Identities=15% Similarity=0.142 Sum_probs=87.4
Q ss_pred cCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhc-CCccEEEEcC-------C---
Q psy11147 94 DGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLAC-KYVDEVVIGA-------P--- 162 (279)
Q Consensus 94 ~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~-k~VD~Vvi~~-------p--- 162 (279)
.-.|||+|.||+.++++|.+.++.++|.+-+. + .+.++.++|+++++.. +..+.|.+.. |
T Consensus 5 ~~~~DPiH~GHl~i~~~a~~~~d~~~V~v~p~------~---~~~~s~e~R~~Mi~~a~~~~~~v~v~~~~~~~v~~~~~ 75 (182)
T smart00764 5 VMNANPFTLGHRYLVEQAAAECDWVHLFVVSE------D---ASLFSFDERFALVKKGTKDLDNVTVHSGSDYIISRATF 75 (182)
T ss_pred EECCCCCCHHHHHHHHHHHHHCCceEEEEEeC------C---CCCCCHHHHHHHHHHHhccCCCEEEEecCCceeccccC
Confidence 35799999999999999999999777777654 1 2467999999998864 5444332211 1
Q ss_pred ---CC-------------ChHHHH----HhcCCcEEEEcCCCCCCCCCCCChhHHHHhC--C-eEEEeC----CCCCCCH
Q psy11147 163 ---YT-------------ITADML----SQLRVDIVCRGLAAVLPDETGRDPYSEAKKL--G-KFKLID----SGNTTTT 215 (279)
Q Consensus 163 ---~~-------------~~~e~i----~~~~id~vV~G~d~~~~~~~~~d~~~~~k~~--G-~~~~i~----~~~~ISS 215 (279)
|. .+++|+ +++++..||+|.|+.||....+|...+.+.. | ....++ .+..+||
T Consensus 76 ~~~~~~~~~~~~~~~a~lsa~~Fi~~L~~~l~~~~ivvG~df~FG~~~~G~~~~L~~~~~~g~~v~~I~r~~~~g~~iSS 155 (182)
T smart00764 76 PSYFLKEQDVVIKSQTTLDLRIFRKYIAPALGITHRYVGEEPFSPVTAIYNQTMKQTLLSPAIEVVEIERKKANGQPISA 155 (182)
T ss_pred hhhhcCchhHHHHHHhcCCHHHHHHHHHHHcCceEEEEcCCCCCCCCCccCHHHHHHHhhCCCEEEEEecccCCCcEECH
Confidence 10 344565 3589999999999999988878875554442 2 233344 3578999
Q ss_pred HHHHHHHHH
Q psy11147 216 EKIVDRIVF 224 (279)
Q Consensus 216 t~I~~rI~~ 224 (279)
|.||+.|.+
T Consensus 156 T~IR~~L~~ 164 (182)
T smart00764 156 STVRKLLKE 164 (182)
T ss_pred HHHHHHHHc
Confidence 999999954
No 42
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=99.36 E-value=1.5e-12 Score=113.72 Aligned_cols=150 Identities=11% Similarity=-0.008 Sum_probs=91.6
Q ss_pred EEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhc-C--Ccc--EEEEcC--CC
Q psy11147 91 VYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLAC-K--YVD--EVVIGA--PY 163 (279)
Q Consensus 91 V~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~-k--~VD--~Vvi~~--p~ 163 (279)
+++.|+||+||.||+.++++|.+.+|.|+|++.+.... ..+ ...++.+||+++++.+ . ++| .|.+.. ..
T Consensus 2 ~l~~GrF~P~H~GHl~~i~~a~~~~~~vii~i~s~~~~-~~~---~~p~~~~eR~~mi~~~~~~~~~~~~rv~i~pi~D~ 77 (181)
T cd02168 2 LVYIGRFQPFHNGHLAVVLIALEKAKKVIILIGSARTA-RNI---KNPWTSEEREVMIEAALSDAGADLARVHFRPLRDH 77 (181)
T ss_pred eEEeeccCCCCHHHHHHHHHHHHHCCeEEEEeCCCCCC-CCC---CCCcCHHHHHHHHHHHHhccCCCcceEEEEecCCC
Confidence 57899999999999999999999999999999776432 122 2347999999999875 2 233 454421 11
Q ss_pred CChHH-H---HH-------hcCCcEEEEcCCCCCCCCCCCChhHHHHhCC-eEEEeCCCCCCCHHHHHHHHHH----hhh
Q psy11147 164 TITAD-M---LS-------QLRVDIVCRGLAAVLPDETGRDPYSEAKKLG-KFKLIDSGNTTTTEKIVDRIVF----HRL 227 (279)
Q Consensus 164 ~~~~e-~---i~-------~~~id~vV~G~d~~~~~~~~~d~~~~~k~~G-~~~~i~~~~~ISSt~I~~rI~~----~r~ 227 (279)
....+ + ++ .-++++++.|.+... ++|.+..... .+..++....||||.||+++.. .+.
T Consensus 78 ~~~~~~W~~~v~~~v~~~~~~~~~i~~~g~~kd~------~~~~~~lfpe~~~~~~p~~~~iSsT~IR~~i~~~~g~~~~ 151 (181)
T cd02168 78 LYSDNLWLAEVQQQVLEIAGGSASVGLVGHRKDA------SSYYLRSFPQWDYLEVPNYPDLNATDIRRAYFEGKEAMYR 151 (181)
T ss_pred CCChHHHHHHHHHhChHhhCCCCcEEEeCCccCC------CccceeecCCcCeecCccccccCHHHHHHHHHhcCCCChh
Confidence 11111 1 11 126688888976521 2221111111 1223344457999999999986 444
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhc
Q psy11147 228 EFERRNFEKENKEMKLIELIESS 250 (279)
Q Consensus 228 ~y~~Rn~~K~~ke~~~~~~~~~~ 250 (279)
.++.-...+..+|....++++..
T Consensus 152 ~lvP~~V~~~I~~~~~~~~~~~l 174 (181)
T cd02168 152 AALPAGVYDFLTAFQDTPRYAQL 174 (181)
T ss_pred HhCCHHHHHHHHHhCCcHHHHHH
Confidence 55555555555555444444443
No 43
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=99.25 E-value=1e-10 Score=101.63 Aligned_cols=148 Identities=20% Similarity=0.208 Sum_probs=88.7
Q ss_pred EEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhc-C--Cc--cEEEEcC-C-
Q psy11147 90 IVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLAC-K--YV--DEVVIGA-P- 162 (279)
Q Consensus 90 iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~-k--~V--D~Vvi~~-p- 162 (279)
++++.|+||+||.||+.++++|.+.+|.|+|++.+... ..+. ...++.+||+.+++.. . .+ +.+.+.. +
T Consensus 2 ~gl~~G~F~P~H~GHl~~i~~a~~~~d~v~v~i~s~~~--~~~~--~~p~~~~~R~~mi~~a~~~~~~~~~~~~~~pi~D 77 (174)
T PRK01153 2 RALFIGRFQPFHKGHLEVIKWILEEVDELIIGIGSAQE--SHTL--KNPFTAGERILMIRKALEEEGIDLSRYYIIPIPD 77 (174)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHhCCEEEEEecCCCC--CCCC--CCCCCHHHHHHHHHHHHhcCCCCcceeeEecCCC
Confidence 47889999999999999999999999999998864321 1122 2346899999998854 2 33 2344331 1
Q ss_pred CCChHHHHHhc-----CCcEEEEcCCCCCCCCCCCChhHHHHhCCeE-EEeC--CCCCCCHHHHHHHHHH--hhhhhhhh
Q psy11147 163 YTITADMLSQL-----RVDIVCRGLAAVLPDETGRDPYSEAKKLGKF-KLID--SGNTTTTEKIVDRIVF--HRLEFERR 232 (279)
Q Consensus 163 ~~~~~e~i~~~-----~id~vV~G~d~~~~~~~~~d~~~~~k~~G~~-~~i~--~~~~ISSt~I~~rI~~--~r~~y~~R 232 (279)
......+.... .+|+|+.|..+.. .+....|.. ...+ ....+|+|.||++|.+ .+..++.-
T Consensus 78 ~~~~~~w~~~v~~~~~~~d~v~~~~~y~~---------~~f~~~g~~v~~~p~~~~~~iSsT~IR~~i~~g~~w~~~VPp 148 (174)
T PRK01153 78 IEFNSIWVSHVESYTPPFDVVYTGNPLVA---------RLFREAGYEVRQPPMFNREEYSGTEIRRRMIEGDPWEELVPK 148 (174)
T ss_pred cchHHHHHHHHHHhCCCCCEEEECChHHH---------HhchhhCCeEecCCccccCCCCHHHHHHHHHcCCchhhhCCH
Confidence 12222233222 6788988863221 111222332 2223 3468999999999975 34444444
Q ss_pred hhhhhHHHHHHHHHHHhc
Q psy11147 233 NFEKENKEMKLIELIESS 250 (279)
Q Consensus 233 n~~K~~ke~~~~~~~~~~ 250 (279)
.......+....++++..
T Consensus 149 ~V~~~i~~~~~~~rir~~ 166 (174)
T PRK01153 149 SVAEVIKEIDGVERIREL 166 (174)
T ss_pred HHHHHHHHhCCHHHHHHH
Confidence 444444444444555443
No 44
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.25 E-value=1.8e-10 Score=101.81 Aligned_cols=94 Identities=23% Similarity=0.216 Sum_probs=66.7
Q ss_pred CeEEEEcCccCCCCHHHHHHHHHHHHcC--CeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHh-cCCccEEEEcC---
Q psy11147 88 DRIVYVDGAYDLFHPGHLDFLEKAKQAG--DYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLA-CKYVDEVVIGA--- 161 (279)
Q Consensus 88 ~~iV~v~G~FDlfH~GHi~~L~~A~~~g--d~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~-~k~VD~Vvi~~--- 161 (279)
+++++++|+||++|.||+.++++|++.. |.+++.+++.+. .|.. ..+++.++|+++++. +...+.+.+.+
T Consensus 4 ~~i~i~gGsFdP~H~GH~~l~~~a~~~~~~d~v~~~p~~~~~---~k~~-~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~ 79 (203)
T PRK00071 4 KRIGLFGGTFDPPHYGHLAIAEEAAERLGLDEVWFLPNPGPP---HKPQ-KPLAPLEHRLAMLELAIADNPRFSVSDIEL 79 (203)
T ss_pred cEEEEEeeCCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCC---CCCC-CCCCCHHHHHHHHHHHhcCCCceEEeHHHH
Confidence 5789999999999999999999999866 678888877653 2321 357899999999985 46666666531
Q ss_pred ---CCCChHHHHH---hcCCc---EEEEcCCCC
Q psy11147 162 ---PYTITADMLS---QLRVD---IVCRGLAAV 185 (279)
Q Consensus 162 ---p~~~~~e~i~---~~~id---~vV~G~d~~ 185 (279)
....|.+.++ +..++ +++.|.|..
T Consensus 80 ~~~~~syT~~tl~~l~~~~p~~~~~fiiG~D~l 112 (203)
T PRK00071 80 ERPGPSYTIDTLRELRARYPDVELVFIIGADAL 112 (203)
T ss_pred hCCCCCCHHHHHHHHHHHCCCCcEEEEEcHHHh
Confidence 1223444443 32344 688898843
No 45
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=99.25 E-value=1.4e-10 Score=99.27 Aligned_cols=128 Identities=19% Similarity=0.175 Sum_probs=83.5
Q ss_pred EEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhc-CCccEEEE---c---CC
Q psy11147 90 IVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLAC-KYVDEVVI---G---AP 162 (279)
Q Consensus 90 iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~-k~VD~Vvi---~---~p 162 (279)
++++.|+||++|.||+.++++|.+.+|.|+|++.+++.. |.. ...++.++|+++++.. ..-+.+.+ . .+
T Consensus 1 igl~~G~F~P~H~GHl~li~~a~~~~d~v~vi~~~~~~~---~~~-~~~~~~~~R~~mi~~a~~~~~~~~v~~~~~~d~~ 76 (158)
T cd02167 1 IGIVFGKFAPLHTGHVYLIYKALSQVDELLIIVGSDDTR---DDA-RTGLPLEKRLRWLREIFPDQENIVVHTLNEPDIP 76 (158)
T ss_pred CEEEeeccCCCCHHHHHHHHHHHHHCCEEEEEECCCCcc---ccc-CCCCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCC
Confidence 357899999999999999999999999999999887632 222 3467999999999864 54343432 1 11
Q ss_pred CC--Ch---H----HHHHh---cCCcEEEEcCCCCCCCCCCCChhHHHHhCC-eEEEeC---CCCCCCHHHHHHHHHHhh
Q psy11147 163 YT--IT---A----DMLSQ---LRVDIVCRGLAAVLPDETGRDPYSEAKKLG-KFKLID---SGNTTTTEKIVDRIVFHR 226 (279)
Q Consensus 163 ~~--~~---~----e~i~~---~~id~vV~G~d~~~~~~~~~d~~~~~k~~G-~~~~i~---~~~~ISSt~I~~rI~~~r 226 (279)
+. .. . +++.+ ..+|+|+.|.++... .+......| ....++ ....||+|.||+-..++|
T Consensus 77 ~~~~~w~~w~~~v~~~v~~~~~~~~~~vf~~~~~~~~------~~~~~~~~~~~~~~v~~~r~~~~iSaT~IR~~p~~~w 150 (158)
T cd02167 77 EYPNGWDIWSNRVKTLIAENTRCRPDIVFTAEEYEAA------FELVLAYLGAQVVLVDPDRTDISVSATQIRENPFRYW 150 (158)
T ss_pred CCchhHHHHHHHHHHHHhhhcCCCCCEEEEccCcchh------hhhHhhcCCCeEEEeccccccCCcCHHHHHhCHHHHH
Confidence 10 01 1 12222 178899999765221 100012223 333333 236899999999998888
Q ss_pred h
Q psy11147 227 L 227 (279)
Q Consensus 227 ~ 227 (279)
+
T Consensus 151 ~ 151 (158)
T cd02167 151 Y 151 (158)
T ss_pred H
Confidence 6
No 46
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.25 E-value=9.4e-11 Score=111.54 Aligned_cols=149 Identities=15% Similarity=0.101 Sum_probs=93.8
Q ss_pred CCeEEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhc-CCcc--EEEEcC--
Q psy11147 87 TDRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLAC-KYVD--EVVIGA-- 161 (279)
Q Consensus 87 ~~~iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~-k~VD--~Vvi~~-- 161 (279)
.++++++.|+||+||.||+.++++|.+.+|.|+|++.+..... .+. .| ++.+||+.+++.+ +.+| .|.+..
T Consensus 5 ~~~~~~~~G~F~P~H~GHl~~i~~a~~~~d~l~v~i~s~~~~~-~~~--~~-~~~~~R~~mi~~~~~~~~~~r~~~~pi~ 80 (340)
T PRK05379 5 RYDYLVFIGRFQPFHNGHLAVIREALSRAKKVIVLIGSADLAR-SIK--NP-FSFEERAQMIRAALAGIDLARVTIRPLR 80 (340)
T ss_pred cceEEEEeeccCCCCHHHHHHHHHHHHHCCEEEEEEccCCCCC-cCC--CC-CCHHHHHHHHHHHhhcCCCceEEEEECC
Confidence 4578999999999999999999999999999999998653221 121 24 7999999999875 5554 344321
Q ss_pred CCCChHH----HHH-------hcCCcEEEEcCCCCCCCCCCCChhHHHH--hCCeEEEeCCCCCCCHHHHHHHHHHh--h
Q psy11147 162 PYTITAD----MLS-------QLRVDIVCRGLAAVLPDETGRDPYSEAK--KLGKFKLIDSGNTTTTEKIVDRIVFH--R 226 (279)
Q Consensus 162 p~~~~~e----~i~-------~~~id~vV~G~d~~~~~~~~~d~~~~~k--~~G~~~~i~~~~~ISSt~I~~rI~~~--r 226 (279)
......+ .++ .-++|+++.|.+.. .++|.+.- .-| +..++..+.+|+|.||+++++. +
T Consensus 81 d~~~~~~~W~~~v~~~v~~~~~~~~~~~~~g~~~~------~~~~~~~~f~~~~-~~~~~~~~~~s~T~iR~~~~~~~~~ 153 (340)
T PRK05379 81 DSLYNDSLWLAEVQAAVAEHAGADARIGLIGHEKD------ASSYYLRSFPQWE-LVDVPNTEDLSATEIRDAYFEGRIS 153 (340)
T ss_pred CCCcChHHHHHHHHHHHHhccCCCCcEEEECCcCC------CChHHHHhccccc-cccCCcccccCccHHHHHHHcCCCc
Confidence 1101111 112 15789999997652 23332211 112 2245556789999999999863 2
Q ss_pred hh---hhhhhhhhhHHHHHHHHH
Q psy11147 227 LE---FERRNFEKENKEMKLIEL 246 (279)
Q Consensus 227 ~~---y~~Rn~~K~~ke~~~~~~ 246 (279)
.. .+.....+..+|.+..+.
T Consensus 154 ~~~~~~vP~~v~~~l~~~~~~~~ 176 (340)
T PRK05379 154 SFYGWAVPAPVYAFLEAFRQTPA 176 (340)
T ss_pred hhhhhcCCHHHHHHHHHhcCCcH
Confidence 33 344444444444443333
No 47
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.
Probab=99.19 E-value=3.6e-10 Score=98.82 Aligned_cols=91 Identities=18% Similarity=0.154 Sum_probs=64.1
Q ss_pred EEEEcCccCCCCHHHHHHHHHHHHcC--CeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhc-CCccEEEEcC-----
Q psy11147 90 IVYVDGAYDLFHPGHLDFLEKAKQAG--DYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLAC-KYVDEVVIGA----- 161 (279)
Q Consensus 90 iV~v~G~FDlfH~GHi~~L~~A~~~g--d~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~-k~VD~Vvi~~----- 161 (279)
+++++|+||++|.||+.+++.|++.+ |.|+|.+..++. .|+ .+..+.++|+++++.+ .....+.+.+
T Consensus 1 i~i~gGsFdP~H~GH~~~~~~a~~~~~~d~v~~~~~~~~~---~k~--~~~~~~~~R~~m~~~~~~~~~~i~v~~~e~~~ 75 (192)
T cd02165 1 IALFGGSFDPPHLGHLAIAEEALEELGLDRVLLLPSANPP---HKP--PKPASFEHRLEMLKLAIEDNPKFEVSDIEIKR 75 (192)
T ss_pred CeEEeeCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCC---CCC--CCCCCHHHHHHHHHHHHcCCCCEEEeHHHHhC
Confidence 46889999999999999999999998 888888776642 343 3678999999999865 4555565531
Q ss_pred -CCCChHHHHH---hcCC--c-EEEEcCCCC
Q psy11147 162 -PYTITADMLS---QLRV--D-IVCRGLAAV 185 (279)
Q Consensus 162 -p~~~~~e~i~---~~~i--d-~vV~G~d~~ 185 (279)
....|.+.++ +..+ + +++.|.|..
T Consensus 76 ~~~~~t~~tl~~l~~~~p~~~~~~liG~D~l 106 (192)
T cd02165 76 DGPSYTIDTLEELRERYPNAELYFIIGSDNL 106 (192)
T ss_pred CCCCCHHHHHHHHHHhccCCCEEEEEcHHHh
Confidence 1234444443 2223 3 577898854
No 48
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.13 E-value=8.9e-10 Score=95.60 Aligned_cols=130 Identities=13% Similarity=0.082 Sum_probs=79.1
Q ss_pred CeEEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhc-CCc--cEEEEcC---
Q psy11147 88 DRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLAC-KYV--DEVVIGA--- 161 (279)
Q Consensus 88 ~~iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~-k~V--D~Vvi~~--- 161 (279)
+++++++|+||++|.||+.+++++ ...|.|+|..+... ..+ ++..+.++|+.+++.+ ... +.+.+.+
T Consensus 2 ~~i~ifGGSFDP~H~GHl~ia~~~-~~~d~v~~vP~~~~---~~~---k~~~~~~~R~~M~~~ai~~~~~~~~~v~~~E~ 74 (174)
T PRK08887 2 KKIAVFGSAFNPPSLGHKSVIESL-SHFDLVLLVPSIAH---AWG---KTMLDYETRCQLVDAFIQDLGLSNVQRSDIEQ 74 (174)
T ss_pred CeEEEeCCCCCCCCHHHHHHHHHh-hcCCEEEEEECCCC---ccc---CCCCCHHHHHHHHHHHHhccCCCceEEehHHh
Confidence 368899999999999999999996 46788887765421 112 2567999999999854 332 3454421
Q ss_pred ------CCCChHHHHH----hc-CCc-EEEEcCCCCCCCCCCCChhHHHHhCCeEEEeCCCCCCCHHHHHHHHHHh
Q psy11147 162 ------PYTITADMLS----QL-RVD-IVCRGLAAVLPDETGRDPYSEAKKLGKFKLIDSGNTTTTEKIVDRIVFH 225 (279)
Q Consensus 162 ------p~~~~~e~i~----~~-~id-~vV~G~d~~~~~~~~~d~~~~~k~~G~~~~i~~~~~ISSt~I~~rI~~~ 225 (279)
....|.+.++ ++ +.+ +++.|.|....-....+...+.+.- .+...+....||||.||+++...
T Consensus 75 ~~~~~~~~~yT~~tl~~l~~~~p~~~~~~iiG~D~l~~l~~W~~~~~i~~~~-~l~~~~~~~~ISST~IR~~l~~g 149 (174)
T PRK08887 75 ELYAPDESVTTYALLTRLQELYPEADLTFVIGPDNFLKFAKFYKADEITQRW-TVMACPEKVPIRSTDIRNALQNG 149 (174)
T ss_pred hhccCCCCcchHHHHHHHHHHCCCCeEEEEEccchHHHHHHhCCHHHHHhhC-eEEEeCCCCCcCHHHHHHHHHcC
Confidence 1112334333 23 222 4666988543211112222222222 24445656789999999999753
No 49
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=99.12 E-value=7e-10 Score=107.78 Aligned_cols=137 Identities=20% Similarity=0.252 Sum_probs=89.7
Q ss_pred CCCCCCeEEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhh--ccC-CCCCCCCHHHHHHHHHhc-CCccEEE
Q psy11147 83 QPKPTDRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAW--YKG-YGYPIMNLHERVLSVLAC-KYVDEVV 158 (279)
Q Consensus 83 ~~~~~~~iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~--~Kg-~~~pi~s~~ER~~~v~~~-k~VD~Vv 158 (279)
.|....+++++.|+||++|.||+.+|++|.+++|.|+|+|.+++.-.. .++ +....++.++|..++++. +..+.|.
T Consensus 47 ~~~~~~~~~v~~G~FdP~H~GH~~lI~~A~~~~d~l~v~v~~~~~~~~~~~~~~~~~~~~s~~~R~~~l~~~~~~~~~v~ 126 (399)
T PRK08099 47 FPRQMKKIGVVFGKFYPLHTGHIYLIQRACSQVDELHIIICYDDERDRKLFEDSAMSQQPTVSDRLRWLLQTFKYQKNIK 126 (399)
T ss_pred hhhhcCcEEEEEEecCCCCHHHHHHHHHHHHHCCeeEEEEEccCCcchhhcccccccCCCCHHHHHHHHHHHhCCCCCEE
Confidence 344444689999999999999999999999999988888877642100 010 113578999999999875 6655554
Q ss_pred EcC-------CCC-C---hH----HHHHh--cCCcEEEEcCCCCCCCCCCCChhHHHHhCC-eEEEeCC---CCCCCHHH
Q psy11147 159 IGA-------PYT-I---TA----DMLSQ--LRVDIVCRGLAAVLPDETGRDPYSEAKKLG-KFKLIDS---GNTTTTEK 217 (279)
Q Consensus 159 i~~-------p~~-~---~~----e~i~~--~~id~vV~G~d~~~~~~~~~d~~~~~k~~G-~~~~i~~---~~~ISSt~ 217 (279)
+.. ++. . .. +.+.. .++++++.|.++. .+.| .+..| .+..++. ...||+|.
T Consensus 127 v~~~~~~~~~~~~~~~~~w~~~v~~~v~~~~~~~~~vf~~~~~d------~~~~--~~~~~~~~~~vd~~r~~~~iSaT~ 198 (399)
T PRK08099 127 IHAFNEEGMEPYPHGWDVWSNGIKAFMAEKGIQPDVIYTSEEQD------APQY--EEHLGIETVLVDPKRTFMNISGTQ 198 (399)
T ss_pred EEecCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCEEEEeCCCC------hHHH--HHhcCCceeeeccccccCCcCHHH
Confidence 431 111 0 11 12222 2689999997652 1233 23323 4445553 35799999
Q ss_pred HHHHHHHhhh
Q psy11147 218 IVDRIVFHRL 227 (279)
Q Consensus 218 I~~rI~~~r~ 227 (279)
||+-..++|+
T Consensus 199 IR~~p~~~w~ 208 (399)
T PRK08099 199 IRENPFRYWE 208 (399)
T ss_pred HhhCHHHHHH
Confidence 9999888875
No 50
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=99.05 E-value=8.6e-10 Score=97.51 Aligned_cols=159 Identities=14% Similarity=0.096 Sum_probs=94.8
Q ss_pred eEEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhc-CCcc--EEEEc---CC
Q psy11147 89 RIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLAC-KYVD--EVVIG---AP 162 (279)
Q Consensus 89 ~iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~-k~VD--~Vvi~---~p 162 (279)
.+.++.|.|.+||.||+.+|++|.+.+|+|||||.+.......+ .| ++..||..|+... +.-| .+++. +-
T Consensus 5 d~~v~iGRFQPfH~GHl~~I~~al~~~devII~IGSA~~s~t~~---NP-FTa~ER~~MI~~aL~e~~~~rv~~ipi~D~ 80 (196)
T PRK13793 5 DYLVFIGRFQPFHLAHMQTIEIALQQSRYVILALGSAQMERNIK---NP-FLAIEREQMILSNFSLDEQKRIRFVHVVDV 80 (196)
T ss_pred eEEEEEecCCCCcHHHHHHHHHHHHhCCEEEEEEccCCCCCCCC---CC-CCHHHHHHHHHHhcchhhcceEEEEecCCc
Confidence 57889999999999999999999999999999999965433333 35 7999999998875 3222 34432 11
Q ss_pred CC--ChHHHHHhcCCcEEEEcCCCCC--CCCCCCChhHHH--HhCCeEEEeCCC-CCCCHHHHHHHHHH--hhhhhhhhh
Q psy11147 163 YT--ITADMLSQLRVDIVCRGLAAVL--PDETGRDPYSEA--KKLGKFKLIDSG-NTTTTEKIVDRIVF--HRLEFERRN 233 (279)
Q Consensus 163 ~~--~~~e~i~~~~id~vV~G~d~~~--~~~~~~d~~~~~--k~~G~~~~i~~~-~~ISSt~I~~rI~~--~r~~y~~Rn 233 (279)
+. .....+...-+ .|+.+..... |.....+.|.+. ..-| +..++.. ..+|+|.||++++. .+..++...
T Consensus 81 ~~~~~Wv~~V~~~v~-~v~~~n~~V~~~g~~k~e~s~~l~~fpew~-~v~~~~~r~~~SaT~IR~~~~~g~~w~~lVP~~ 158 (196)
T PRK13793 81 YNDEKWVKQVKSLVN-GVIEPNSKVGLIGHFKDESSYYLRLFPEWV-MVELDSLKDSISATPMREAYYQGKIKTDAFPKG 158 (196)
T ss_pred cchhHHHHHHHHhch-hhccCCCcceeecccccCceEEEEeCCCCc-eeecccccCccchHHHHHHHHcCCChhhhCCHH
Confidence 11 11112222222 2222221100 000001111000 0001 1223332 67999999999986 477778888
Q ss_pred hhhhHHHHHHHHHHHhcccc
Q psy11147 234 FEKENKEMKLIELIESSKTG 253 (279)
Q Consensus 234 ~~K~~ke~~~~~~~~~~~~~ 253 (279)
..+..+|.+..++++....+
T Consensus 159 V~~~l~~~~~~~r~~~L~~E 178 (196)
T PRK13793 159 TIQFLEEFQNTPLYLQLQQK 178 (196)
T ss_pred HHHHHHHhCCcHHHHHHHHH
Confidence 88888887776766665544
No 51
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=99.00 E-value=3.5e-09 Score=100.73 Aligned_cols=134 Identities=16% Similarity=0.131 Sum_probs=80.2
Q ss_pred CeEEEEcCccCCCCHHHHHHHHHHHHc--CCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHh-cCCccEEEEcC---
Q psy11147 88 DRIVYVDGAYDLFHPGHLDFLEKAKQA--GDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLA-CKYVDEVVIGA--- 161 (279)
Q Consensus 88 ~~iV~v~G~FDlfH~GHi~~L~~A~~~--gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~-~k~VD~Vvi~~--- 161 (279)
|++++++|+|||+|.||+.++++|.+. .|.+++..+.++ ..|.. .+..+.++|+++++. +...+.+.+.+
T Consensus 1 m~i~i~gGsFdP~H~GHl~la~~a~~~~~~d~v~~~p~~~~---p~K~~-~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~ 76 (342)
T PRK07152 1 MKIAIFGGSFDPIHKGHINIAKKAIKKLKLDKLFFVPTYIN---PFKKK-QKASNGEHRLNMLKLALKNLPKMEVSDFEI 76 (342)
T ss_pred CeEEEEeeCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCCC---CCCCC-CCCCCHHHHHHHHHHHHhhCCCeEEeHHHH
Confidence 578999999999999999999999976 367877776554 23432 245556999999864 45555655531
Q ss_pred ---CCCChHHHH---HhcCCc---EEEEcCCCCCCCCCCCChhHHHHhCC------------------eEEEeC-CCCCC
Q psy11147 162 ---PYTITADML---SQLRVD---IVCRGLAAVLPDETGRDPYSEAKKLG------------------KFKLID-SGNTT 213 (279)
Q Consensus 162 ---p~~~~~e~i---~~~~id---~vV~G~d~~~~~~~~~d~~~~~k~~G------------------~~~~i~-~~~~I 213 (279)
....|.+.+ ++.-++ +++.|.|....-....+...+.+.-+ .+..++ ....|
T Consensus 77 ~~~~~syt~~tl~~l~~~~p~~~~~~iiG~D~~~~l~~W~~~~~l~~~~~~iv~~R~g~~~~~~~~~~~i~~~~~~~~~i 156 (342)
T PRK07152 77 KRQNVSYTIDTIKYFKKKYPNDEIYFIIGSDNLEKFKKWKNIEEILKKVQIVVFKRKKNINKKNLKKYNVLLLKNKNLNI 156 (342)
T ss_pred hCCCCCcHHHHHHHHHHhCCCCcEEEEecHHHhhhcccccCHHHHHHhCCEEEEECCCCCcccccccCcEEEecCCcccc
Confidence 012233433 332343 67889885432111122222222111 122222 12579
Q ss_pred CHHHHHHHHHHh
Q psy11147 214 TTEKIVDRIVFH 225 (279)
Q Consensus 214 SSt~I~~rI~~~ 225 (279)
|||.||+++...
T Consensus 157 SST~IR~~~~~~ 168 (342)
T PRK07152 157 SSTKIRKGNLLG 168 (342)
T ss_pred CHHHHHHHHHcC
Confidence 999999998754
No 52
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.
Probab=98.99 E-value=3.7e-09 Score=92.72 Aligned_cols=89 Identities=24% Similarity=0.222 Sum_probs=59.1
Q ss_pred EcCccCCCCHHHHHHHHHHHHcC--CeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHH-hcCCccEEEEcC------CC
Q psy11147 93 VDGAYDLFHPGHLDFLEKAKQAG--DYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVL-ACKYVDEVVIGA------PY 163 (279)
Q Consensus 93 v~G~FDlfH~GHi~~L~~A~~~g--d~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~-~~k~VD~Vvi~~------p~ 163 (279)
++|+|||+|.||+.++++|.+.. |.++|....++. .|.. ....+.++|+++++ ++...+.+.+.+ ..
T Consensus 2 ~gGsFdP~H~GHl~l~~~a~~~~~~d~v~~~p~~~~p---~k~~-~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~~~~ 77 (193)
T TIGR00482 2 FGGSFDPIHYGHLLLAEEALDHLDLDKVIFVPTANPP---HKKT-YEAASSHHRLAMLKLAIEDNPKFEVDDFEIKRGGP 77 (193)
T ss_pred ccccCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCC---CCCC-CCCCCHHHHHHHHHHHHhcCCCEEEeHHHHhCCCC
Confidence 58999999999999999999876 567666665542 3432 24579999999998 456666665541 11
Q ss_pred CChHHHHH---hcCCc---EEEEcCCCC
Q psy11147 164 TITADMLS---QLRVD---IVCRGLAAV 185 (279)
Q Consensus 164 ~~~~e~i~---~~~id---~vV~G~d~~ 185 (279)
..|.+.++ +.-++ +++.|.|..
T Consensus 78 syT~~tl~~l~~~~p~~~~~~iiG~D~l 105 (193)
T TIGR00482 78 SYTIDTLKHLKKKYPDVELYFIIGADAL 105 (193)
T ss_pred CCHHHHHHHHHHHCCCCeEEEEEcHHHh
Confidence 23444443 32233 578898743
No 53
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=98.99 E-value=5.4e-09 Score=92.65 Aligned_cols=95 Identities=20% Similarity=0.169 Sum_probs=66.1
Q ss_pred CCeEEEEcCccCCCCHHHHHHHHHHHHcCC--eEEEEEcCChhhhhccCCCCCCCCHHHHHHHHH-hcCCccEEEEcC--
Q psy11147 87 TDRIVYVDGAYDLFHPGHLDFLEKAKQAGD--YLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVL-ACKYVDEVVIGA-- 161 (279)
Q Consensus 87 ~~~iV~v~G~FDlfH~GHi~~L~~A~~~gd--~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~-~~k~VD~Vvi~~-- 161 (279)
.+++++++|+||++|.||+.+.++|.+..+ .|++-.+..+. .|.. ....+.++|++|++ +++..+...+.+
T Consensus 2 ~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~vi~~ps~~~p---~k~~-~~~a~~~~R~~Ml~la~~~~~~~~v~~~e 77 (197)
T COG1057 2 MKKIALFGGSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPVPP---HKKK-KELASAEHRLAMLELAIEDNPRFEVSDRE 77 (197)
T ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEecCCCCC---CCCC-ccCCCHHHHHHHHHHHHhcCCCcceeHHH
Confidence 468999999999999999999999998765 66666665542 3331 46899999999987 466665533311
Q ss_pred ----CCCChHH---HHH-hcCCcE---EEEcCCCC
Q psy11147 162 ----PYTITAD---MLS-QLRVDI---VCRGLAAV 185 (279)
Q Consensus 162 ----p~~~~~e---~i~-~~~id~---vV~G~d~~ 185 (279)
....|.+ .++ ++++|. .+.|.|..
T Consensus 78 ~~r~g~sYT~dTl~~~~~~~~p~~~~~fIiGaD~l 112 (197)
T COG1057 78 IKRGGPSYTIDTLEHLRQEYGPDVELYFIIGADNL 112 (197)
T ss_pred HHcCCCcchHHHHHHHHHHhCCCCcEEEEEehHHh
Confidence 1223344 333 677873 78898854
No 54
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=98.98 E-value=8.4e-10 Score=87.53 Aligned_cols=57 Identities=25% Similarity=0.215 Sum_probs=50.1
Q ss_pred EEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhc
Q psy11147 91 VYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLAC 151 (279)
Q Consensus 91 V~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~ 151 (279)
++++|+||++|.||+.++++|++++|.++|++.+++.... + .++.++++|...++++
T Consensus 2 ~~~~G~Fdp~H~GH~~l~~~a~~~~d~~i~~i~~~~~~~~-~---~~~~~~~~R~~~l~~~ 58 (105)
T cd02156 2 ARFPGEPGYLHIGHAKLICRAKGIADQCVVRIDDNPPVKV-W---QDPHELEERKESIEED 58 (105)
T ss_pred EEeCCCCCCCCHHHHHHHHHHHHhCCcEEEEEcCCCcccc-c---CChHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999875421 1 3589999999999987
No 55
>PRK13670 hypothetical protein; Provisional
Probab=98.93 E-value=4.1e-09 Score=102.16 Aligned_cols=91 Identities=25% Similarity=0.286 Sum_probs=70.5
Q ss_pred CeEEEEcCccCCCCHHHHHHHHHHHHcCC-eEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhcCCccEEEEcCCCC--
Q psy11147 88 DRIVYVDGAYDLFHPGHLDFLEKAKQAGD-YLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACKYVDEVVIGAPYT-- 164 (279)
Q Consensus 88 ~~iV~v~G~FDlfH~GHi~~L~~A~~~gd-~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~k~VD~Vvi~~p~~-- 164 (279)
|++|=+.--||+||.||+.+|++|++.+. .++++|-+-..+.+ |. .+|++.++|+++++.+ +||.|+.. ||+
T Consensus 1 Mk~~GIIaEfdg~H~GH~~~i~~a~~~a~~~~~~~Vmp~~f~qr--g~-p~i~~~~~R~~~a~~~-GvD~viel-pf~~a 75 (388)
T PRK13670 1 MKVTGIIVEYNPFHNGHLYHLNQAKKLTNADVTIAVMSGNFVQR--GE-PAIVDKWTRAKMALEN-GVDLVVEL-PFLYS 75 (388)
T ss_pred CceeEEEeeeCCcCHHHHHHHHHHHHHHhCCCcEEEecHHHhCC--CC-CCCCCHHHHHHHHHHc-CCCEEEEe-CCchH
Confidence 45666667899999999999999998664 45444446555543 44 3599999999999999 99999987 665
Q ss_pred --ChHHHHH-------hcCCcEEEEcCC
Q psy11147 165 --ITADMLS-------QLRVDIVCRGLA 183 (279)
Q Consensus 165 --~~~e~i~-------~~~id~vV~G~d 183 (279)
.+++|++ .++++.||+|.|
T Consensus 76 ~~sae~F~~~aV~iL~~l~v~~lv~G~e 103 (388)
T PRK13670 76 VQSADFFAEGAVSILDALGVDSLVFGSE 103 (388)
T ss_pred hCCHHHHHHhHHHHHHHcCCCEEEEcCC
Confidence 4444554 478999999998
No 56
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=98.91 E-value=2.1e-08 Score=94.99 Aligned_cols=68 Identities=21% Similarity=0.191 Sum_probs=54.0
Q ss_pred CeEEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHh-cCCccE-EEE
Q psy11147 88 DRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLA-CKYVDE-VVI 159 (279)
Q Consensus 88 ~~iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~-~k~VD~-Vvi 159 (279)
|++++++|+|||+|.||+.++++|.+++|.|+|.+...... .|. .+.++.++|+.+++. |+.... |.+
T Consensus 1 ~~i~i~~GsFdP~H~GHl~ii~~a~~~~d~v~v~~~~~~~~--~~~--~~~~~~~~R~~~l~~~~~~~~~~v~v 70 (325)
T TIGR01526 1 KTIGVVFGKFYPLHTGHIYLIYEAFSKVDELHIVVGSLFYD--SKA--KRPPPVQDRLRWLREIFKYQKNQIFI 70 (325)
T ss_pred CcEEEEeeccCCCCHHHHHHHHHHHHHCCEEEEEECCCCcC--ccC--CCCCCHHHHHHHHHHHhccCCCeEEE
Confidence 46889999999999999999999999999999999863211 122 467899999999975 566665 443
No 57
>PRK13671 hypothetical protein; Provisional
Probab=98.85 E-value=1.3e-08 Score=95.30 Aligned_cols=86 Identities=21% Similarity=0.325 Sum_probs=69.3
Q ss_pred EcCccCCCCHHHHHHHHHHHHc--CCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhcCCccEEEEcCCCC---C--
Q psy11147 93 VDGAYDLFHPGHLDFLEKAKQA--GDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACKYVDEVVIGAPYT---I-- 165 (279)
Q Consensus 93 v~G~FDlfH~GHi~~L~~A~~~--gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~k~VD~Vvi~~p~~---~-- 165 (279)
+.-+|||||.||+.++++|++. +|.+|+..+.++. .||. ..+++.++|+++++.+ |||-|+.. |+. .
T Consensus 5 IIaeFNP~H~GHl~~~~~a~~~~~~d~vi~vpSg~~~---qrg~-pa~~~~~~R~~ma~~~-G~DLViEL-P~~~a~~sA 78 (298)
T PRK13671 5 IIAEYNPFHNGHIYQINYIKNKFPNEKIIVILSGKYT---QRGE-IAVASFEKRKKIALKY-GVDKVIKL-PFEYATQAA 78 (298)
T ss_pred EEeeeCCccHHHHHHHHHHHHhcCCCEEEEEECcCCC---CCCC-CCCCCHHHHHHHHHHc-CCCEEEec-cHHHHhhch
Confidence 4468999999999999999987 4688888888763 4554 4677999999999999 99999965 432 1
Q ss_pred ------hHHHHHhcCCcEEEEcCCC
Q psy11147 166 ------TADMLSQLRVDIVCRGLAA 184 (279)
Q Consensus 166 ------~~e~i~~~~id~vV~G~d~ 184 (279)
...++..+++|.++.|.+.
T Consensus 79 e~FA~gaV~lL~~lgvd~l~FGsE~ 103 (298)
T PRK13671 79 HIFAKGAIKKLNKEKIDKLIFGSES 103 (298)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCC
Confidence 2346678899999999975
No 58
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=98.81 E-value=9.2e-08 Score=87.33 Aligned_cols=57 Identities=21% Similarity=0.230 Sum_probs=46.1
Q ss_pred CeEEEEcCccCCCCHHHHHHHHHHHHcC--CeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHh
Q psy11147 88 DRIVYVDGAYDLFHPGHLDFLEKAKQAG--DYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLA 150 (279)
Q Consensus 88 ~~iV~v~G~FDlfH~GHi~~L~~A~~~g--d~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~ 150 (279)
+++++++|+||++|.||+.+.++|.+.. |.+++....++. .| ....+.++|++|++.
T Consensus 22 ~~IgifGGSFdPiH~GHl~ia~~~~~~l~ld~v~~iP~~~pp---~K---~~~~~~~~Rl~M~~l 80 (243)
T PRK06973 22 RRIGILGGTFDPIHDGHLALARRFADVLDLTELVLIPAGQPW---QK---ADVSAAEHRLAMTRA 80 (243)
T ss_pred ceEEEECCCCCCCcHHHHHHHHHHHHHcCCCEEEEEECCcCC---CC---CCCCCHHHHHHHHHH
Confidence 4789999999999999999999999765 577777766542 34 257799999999874
No 59
>KOG3351|consensus
Probab=98.74 E-value=3.1e-08 Score=89.77 Aligned_cols=129 Identities=19% Similarity=0.203 Sum_probs=89.0
Q ss_pred CCeEEEEcCccCCCCHHHHHHHHHHHHcCC-eEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhc----C---CccEEE
Q psy11147 87 TDRIVYVDGAYDLFHPGHLDFLEKAKQAGD-YLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLAC----K---YVDEVV 158 (279)
Q Consensus 87 ~~~iV~v~G~FDlfH~GHi~~L~~A~~~gd-~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~----k---~VD~Vv 158 (279)
+-.++.++|+||-+|.||.-+|..|..++. .|||||..|+.+.. |-...-|-+.++|++-|..+ + .|+.+=
T Consensus 141 ~~~~~alGGTFDrLH~gHKvLLs~aa~la~~~lVvGV~d~elL~k-K~~~Eliepie~R~~~V~~Fl~~IKp~l~~~~vp 219 (293)
T KOG3351|consen 141 KFMVVALGGTFDRLHDGHKVLLSVAAELASDRLVVGVTDDELLKK-KVLKELIEPIEERKEHVSNFLKSIKPDLNVRVVP 219 (293)
T ss_pred cceeEEeccchhhhccchHHHHHHHHHHhhceEEEEecChHHHHH-hHHHHHhhhHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 346789999999999999999999999985 89999999998754 22123588999999876654 3 255555
Q ss_pred EcCCCCChHHHHHhcCCcEEEEcCCCCCCCCCCCChhHHHHhCCe----EEE---eCCCCCCCHHHHHHHH
Q psy11147 159 IGAPYTITADMLSQLRVDIVCRGLAAVLPDETGRDPYSEAKKLGK----FKL---IDSGNTTTTEKIVDRI 222 (279)
Q Consensus 159 i~~p~~~~~e~i~~~~id~vV~G~d~~~~~~~~~d~~~~~k~~G~----~~~---i~~~~~ISSt~I~~rI 222 (279)
+.+||+++ +..-.++++|+..+...|.. .+..-.-..|. ... +...+.+|++++++.-
T Consensus 220 i~Dp~GPt---~~d~elE~lVVS~ET~~Ga~---aVNr~R~E~glseLai~vVell~~~~kls~t~~~~~k 284 (293)
T KOG3351|consen 220 IHDPFGPT---ITDPELEALVVSEETKTGAT---AVNRKRVERGLSELAIYVVELLYDAQKLSSTENRELK 284 (293)
T ss_pred cccCCCCC---ccCCcceEEEEeeccccchh---hhhHHHHHcCCchheEEEEeeccChhhcchhHHHHhh
Confidence 67799876 34457788888877655532 11111122332 222 3445679999987653
No 60
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.65 E-value=7.1e-08 Score=91.76 Aligned_cols=127 Identities=17% Similarity=0.218 Sum_probs=83.5
Q ss_pred CCCeEEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHh-cCCccEEEEc--CC
Q psy11147 86 PTDRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLA-CKYVDEVVIG--AP 162 (279)
Q Consensus 86 ~~~~iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~-~k~VD~Vvi~--~p 162 (279)
++.+++++.|+|||||.||+.++++|.+++|.++|.|-.+ + .++++.++|..+++. ++..+.|.+. ..
T Consensus 137 ~~~~i~~~~g~fdP~t~GH~~li~~A~~~~d~~~v~v~~~------~---~~~f~~~~R~~~v~~~~~~~~nv~v~~~~~ 207 (332)
T TIGR00124 137 PGNKIGSIVMNANPFTNGHRYLIEQAARQCDWLHLFVVKE------D---ASLFSYDERFALVKQGIQDLSNVTVHNGSA 207 (332)
T ss_pred CCCcEEEEEeCcCCCchHHHHHHHHHHHHCCEEEEEEEeC------C---CCCCCHHHHHHHHHHHhcCCCCEEEEecCC
Confidence 3458999999999999999999999999999888888532 2 368999999999986 4555655432 12
Q ss_pred CC-----Ch----------------HH---H----HHhcCCcEEEEcCCCCCCCCCCCChhH--HHHh--------CCeE
Q psy11147 163 YT-----IT----------------AD---M----LSQLRVDIVCRGLAAVLPDETGRDPYS--EAKK--------LGKF 204 (279)
Q Consensus 163 ~~-----~~----------------~e---~----i~~~~id~vV~G~d~~~~~~~~~d~~~--~~k~--------~G~~ 204 (279)
|. .+ .| | ...++|..-.+|.++...- ...|. +..+ .=..
T Consensus 208 ~~is~atfp~yflk~~~~~~~~~~~ld~~~f~~~ia~~l~i~~r~vg~ep~~~~---t~~yn~~m~~~~~~~~~~~~I~~ 284 (332)
T TIGR00124 208 YIISRATFPAYFLKEQDVADDCYTEIDLKLFRYKIAPALGITHRFVGTEPLCPV---TALYNQKMKYWLEEPNDAPPIEV 284 (332)
T ss_pred ceeccccchhhhcCChhHHHHHHHHHHHHHHHHhchHhhCCccceeCCCCCCHh---HHHHHHHHHHhhhccCCCCCcEE
Confidence 11 00 00 1 1245777778888765421 11221 1111 1123
Q ss_pred EEeCC----CCCCCHHHHHHHHHH
Q psy11147 205 KLIDS----GNTTTTEKIVDRIVF 224 (279)
Q Consensus 205 ~~i~~----~~~ISSt~I~~rI~~ 224 (279)
..|++ +..+|.|.||+.|.+
T Consensus 285 ~~I~R~~~~~~~~SASaIR~~L~~ 308 (332)
T TIGR00124 285 VEIQRKLAAGGPISASTVRELLAK 308 (332)
T ss_pred EEEeeecCCCCeeCHHHHHHHHHc
Confidence 44553 467999999999854
No 61
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.
Probab=98.57 E-value=3.7e-07 Score=82.34 Aligned_cols=67 Identities=21% Similarity=0.241 Sum_probs=44.8
Q ss_pred EEEEcCccCCCCHHHHHHHHHHHHcCC--e-E-EEEE--cCChhhhhccCCCCCCCCHHHHHHHHH-hcCCccEEEEc
Q psy11147 90 IVYVDGAYDLFHPGHLDFLEKAKQAGD--Y-L-IVGI--HPDHVVAWYKGYGYPIMNLHERVLSVL-ACKYVDEVVIG 160 (279)
Q Consensus 90 iV~v~G~FDlfH~GHi~~L~~A~~~gd--~-L-IVgv--~~D~~v~~~Kg~~~pi~s~~ER~~~v~-~~k~VD~Vvi~ 160 (279)
+.+++|+||++|.||+.+++.|.+..+ . + ++.+ .+-. .+..| ....+.++|++|++ ++...+.+.+.
T Consensus 2 ~~~~gGSFdPiH~gHl~ia~~a~~~l~~~~~~~~v~~~~~P~~-~~~~k---~~~~~~~~Rl~Ml~lai~~~~~~~v~ 75 (225)
T cd09286 2 VLLACGSFNPITNMHLRMFELARDHLHETGRYEVVGGIISPVN-DAYGK---KGLASAKHRVAMCRLAVQSSDWIRVD 75 (225)
T ss_pred EEEeCcCcCCCcHHHHHHHHHHHHHHHhhcCceeEEEEEEeec-cCCCC---CCCCCHHHHHHHHHHHHccCCCEEEE
Confidence 567899999999999999999987654 2 1 2221 1210 00123 35789999999987 56655655553
No 62
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=98.54 E-value=8.3e-07 Score=80.52 Aligned_cols=73 Identities=22% Similarity=0.268 Sum_probs=45.6
Q ss_pred CCCCCeEEEEcCccCCCCHHHHHHHHHHHHcC--C-eEEEEEcCChhhhhccCCCCCCCCHHHHHHHHH-hcCCccEEE
Q psy11147 84 PKPTDRIVYVDGAYDLFHPGHLDFLEKAKQAG--D-YLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVL-ACKYVDEVV 158 (279)
Q Consensus 84 ~~~~~~iV~v~G~FDlfH~GHi~~L~~A~~~g--d-~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~-~~k~VD~Vv 158 (279)
++....+.+.+|+||++|.||+.+++.|.+.. | ..+|++.-.+.-...+. ....+.++|++|++ ++..-..+.
T Consensus 18 ~~~~~~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v~~~~~P~~~~~~k--~~~~~~~~Rl~Ml~lai~~~~~~~ 94 (236)
T PLN02945 18 GPRTRVVLVATGSFNPPTYMHLRMFELARDALMSEGYHVLGGYMSPVNDAYKK--KGLASAEHRIQMCQLACEDSDFIM 94 (236)
T ss_pred cCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEEEEEECCCCccccc--CCCCCHHHHHHHHHHHhcCCCCeE
Confidence 34455677888899999999999999888654 3 23443222121111121 24679999999986 555444333
No 63
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=98.50 E-value=4.5e-07 Score=84.51 Aligned_cols=107 Identities=17% Similarity=0.156 Sum_probs=75.7
Q ss_pred CCeEEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhc-cCCCCCCCCHHHHHHHHHhcCCccEEEEcCCCC-
Q psy11147 87 TDRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWY-KGYGYPIMNLHERVLSVLACKYVDEVVIGAPYT- 164 (279)
Q Consensus 87 ~~~iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~-Kg~~~pi~s~~ER~~~v~~~k~VD~Vvi~~p~~- 164 (279)
+.+++++. +..-+|.||+.+|++|++.++.+||.+.+++..-.. ......++++++|..+++++ +||.+++...-.
T Consensus 21 ~~~i~~v~-tmG~lH~GH~~Li~~a~~~a~~vVvTf~~~P~qf~~~~~~~~~~~t~e~~~~ll~~~-GvD~v~~p~~~~m 98 (281)
T PRK00380 21 GKRIGLVP-TMGALHEGHLSLVREARAEADIVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEAA-GVDLVFAPSVEEM 98 (281)
T ss_pred CCeEEEEE-ccCceeHHHHHHHHHHHHhCCEEEEeCCCCHHHhCCCccccccCCCHHHHHHHHHHc-CCCEEEeCCHHHC
Confidence 44565444 444499999999999999999999999998854211 11123578999999999999 899998752111
Q ss_pred ChHHHHHhc---CCcEEEEcC----------------------CC-CCCCCCCCChh
Q psy11147 165 ITADMLSQL---RVDIVCRGL----------------------AA-VLPDETGRDPY 195 (279)
Q Consensus 165 ~~~e~i~~~---~id~vV~G~----------------------d~-~~~~~~~~d~~ 195 (279)
.+.+|+..+ ++..+++|. |+ .||..+.++..
T Consensus 99 yp~~f~~~i~~~~~~~vl~G~~RpghF~Gv~tvv~kLf~iv~Pd~a~FG~kd~qq~~ 155 (281)
T PRK00380 99 YPQGLQTYVSVPGLSDVLEGASRPGHFRGVATVVTKLFNIVQPDVAYFGEKDYQQLA 155 (281)
T ss_pred CCccceeEEEcccccccccCCCCCccccchhhHHHHHhhccCCCeeEECCCcchhHH
Confidence 234455433 266889999 88 88877666653
No 64
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=98.40 E-value=4.8e-07 Score=78.51 Aligned_cols=148 Identities=15% Similarity=0.133 Sum_probs=91.7
Q ss_pred CCeEEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhc-C--Ccc-EEEEcCC
Q psy11147 87 TDRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLAC-K--YVD-EVVIGAP 162 (279)
Q Consensus 87 ~~~iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~-k--~VD-~Vvi~~p 162 (279)
+++..++.|.|-+||.||+.++++|.+..|.|||+|.++..-...+ .| ++..||+.+++.+ + +.| .+++..-
T Consensus 2 ~~~rgv~~GRFqP~H~GHl~vi~~al~~vDeliI~iGSa~~~~t~~---nP-fTagER~~mi~~~L~~~~~~~r~~~~~v 77 (172)
T COG1056 2 RMKRGVYFGRFQPLHTGHLYVIKRALSKVDELIIVIGSAQESHTLK---NP-FTAGERIPMIRDRLREAGLDLRVYLRPV 77 (172)
T ss_pred CceEEEEEeccCCccHhHHHHHHHHHHhCCEEEEEEccCccccccc---CC-CCccchhHHHHHHHHhcCCCceEEEEec
Confidence 4678999999999999999999999999999999999987543333 24 7889999998854 2 455 4554321
Q ss_pred CCChH-----HHHHhcCCcEEEEcCCCCCCCCCCCChh--HHHHhCCeEEEeC---CCCCCCHHHHHHHHHH---hhhhh
Q psy11147 163 YTITA-----DMLSQLRVDIVCRGLAAVLPDETGRDPY--SEAKKLGKFKLID---SGNTTTTEKIVDRIVF---HRLEF 229 (279)
Q Consensus 163 ~~~~~-----e~i~~~~id~vV~G~d~~~~~~~~~d~~--~~~k~~G~~~~i~---~~~~ISSt~I~~rI~~---~r~~y 229 (279)
++... .+++..-+. +...-..|+. .+....|.-...+ .....+.|.|+.+++. ++..+
T Consensus 78 ~d~~~n~i~v~~v~~~~p~---------~~~~~~~n~~v~~lf~~~~~~~~~p~~f~~~e~~~t~ir~~~~~~e~~w~~~ 148 (172)
T COG1056 78 FDIEYNDIWVAYVEDLVPP---------FDVVYTWNPWVARLFHEKGEKVYYPPMFPRWEYSGTAIRRKMLGGEDVWEDL 148 (172)
T ss_pred CccccchhhHHHHhhcCCC---------ccccCCCCHHHHHHHhhcCceeecCCcccccccccchHHHHhhcCccchhhc
Confidence 22111 122222222 1111113332 2233333221111 2256788999999885 48888
Q ss_pred hhhhhhhhHHHHHHHHHH
Q psy11147 230 ERRNFEKENKEMKLIELI 247 (279)
Q Consensus 230 ~~Rn~~K~~ke~~~~~~~ 247 (279)
.+.......+|+.-.+..
T Consensus 149 ~~~~v~~~i~eI~g~~r~ 166 (172)
T COG1056 149 VPTFVAESITEIRGVPRL 166 (172)
T ss_pred cCchHhHHHHhcCCchHH
Confidence 877777666666544433
No 65
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=98.34 E-value=1.2e-06 Score=81.49 Aligned_cols=100 Identities=17% Similarity=0.180 Sum_probs=74.1
Q ss_pred EEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhc-cCCCCCCCCHHHHHHHHHhcCCccEEEEcCCCC--ChH
Q psy11147 91 VYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWY-KGYGYPIMNLHERVLSVLACKYVDEVVIGAPYT--ITA 167 (279)
Q Consensus 91 V~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~-Kg~~~pi~s~~ER~~~v~~~k~VD~Vvi~~p~~--~~~ 167 (279)
|.+.|. +|.||+.++++|++.++.+||.|..++.--.. ......+.++++++++++++ +||.++.. .+. .+.
T Consensus 27 V~TmG~---LH~GH~~LI~~a~~~a~~vVvtf~~nP~qf~~~ed~~~y~~t~e~d~~ll~~~-GvD~vF~p-~~~~m~p~ 101 (277)
T cd00560 27 VPTMGA---LHEGHLSLVRRARAENDVVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEEA-GVDLLFAP-SVEEMYPE 101 (277)
T ss_pred EECCCc---ccHHHHHHHHHHHHhCCEEEEEecCChhhcCCcccccccCCCHHHHHHHHHHC-CCCEEECC-CHHHcCCC
Confidence 557788 99999999999999999999999998864211 11123478999999999999 89988532 111 223
Q ss_pred HHH----HhcCCcEEEEcC----------------------C-CCCCCCCCCChh
Q psy11147 168 DML----SQLRVDIVCRGL----------------------A-AVLPDETGRDPY 195 (279)
Q Consensus 168 e~i----~~~~id~vV~G~----------------------d-~~~~~~~~~d~~ 195 (279)
+|+ ...++..+++|. | +.||..+.++..
T Consensus 102 ~f~~~~v~~~~~~~il~G~~RpghF~GV~tvv~kLf~iv~Pd~~~FG~kd~gq~~ 156 (277)
T cd00560 102 GLFSTFVDVGPLSEVLEGASRPGHFRGVATVVAKLFNLVQPDRAYFGEKDAQQLA 156 (277)
T ss_pred CCceEEEecCCCceEEecCCCCccccceeeeehhhhcccCCCeEEECCCccccHH
Confidence 333 345788999999 8 889987766654
No 66
>KOG2804|consensus
Probab=98.24 E-value=1.8e-07 Score=86.90 Aligned_cols=34 Identities=26% Similarity=0.282 Sum_probs=32.2
Q ss_pred CCCCCCCCCCCCCeeeeccCCCcchhhHHHHHHh
Q psy11147 6 PRPPLIRPWVPTRTMEVQRTAGVSTTDLVGRMLS 39 (279)
Q Consensus 6 ~~~~~~~~~~~gr~~~vkRT~gVSTTdivgRmL~ 39 (279)
.+|+|+..|++|||...+|||||||+|||-||..
T Consensus 165 sdDiY~~vK~~G~F~~T~RTeGvSTSDiI~rIVr 198 (348)
T KOG2804|consen 165 SDDIYKPVKEAGMFLPTQRTEGVSTSDIITRIVR 198 (348)
T ss_pred chhHHHHHHHhcccccccccCCccHHHHHHHHHH
Confidence 4799999999999999999999999999999983
No 67
>PLN02413 choline-phosphate cytidylyltransferase
Probab=98.08 E-value=9.8e-07 Score=81.93 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=32.7
Q ss_pred CCCCCCCCCCCCCCeeeeccCCCcchhhHHHHHHh
Q psy11147 5 PPRPPLIRPWVPTRTMEVQRTAGVSTTDLVGRMLS 39 (279)
Q Consensus 5 ~~~~~~~~~~~~gr~~~vkRT~gVSTTdivgRmL~ 39 (279)
.+.|+|..+|++|+|++++||+|||||+||.|||.
T Consensus 130 ~g~D~Y~~vK~~G~f~~i~Rt~gvSTTdII~RIlk 164 (294)
T PLN02413 130 AGKDVYEFVKKIGKFKETKRTDGISTSDIIMRIVK 164 (294)
T ss_pred cCchhHHHHHHCCeEEEecCCCCcCHHHHHHHHHH
Confidence 35789999999999999999999999999999984
No 68
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=98.08 E-value=5.7e-06 Score=80.39 Aligned_cols=92 Identities=26% Similarity=0.328 Sum_probs=39.8
Q ss_pred CeEEEEcCccCCCCHHHHHHHHHHHHcCC-eEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhcCCccEEEEcCCCC--
Q psy11147 88 DRIVYVDGAYDLFHPGHLDFLEKAKQAGD-YLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACKYVDEVVIGAPYT-- 164 (279)
Q Consensus 88 ~~iV~v~G~FDlfH~GHi~~L~~A~~~gd-~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~k~VD~Vvi~~p~~-- 164 (279)
|++|=+.--|.|||.||.-.|++|++... ..||+|-+-..|.+ |. ..|++-..|+++.+.+ |||-|+.. |+.
T Consensus 1 Mk~~GIIaEYNPFHnGH~y~i~~~k~~~~ad~ii~vMSGnFvQR--GE-PAi~dKw~RA~~AL~~-GaDLViEL-P~~~a 75 (388)
T PF05636_consen 1 MKVVGIIAEYNPFHNGHLYQIEQAKKITGADVIIAVMSGNFVQR--GE-PAIIDKWTRAEMALKN-GADLVIEL-PVVYA 75 (388)
T ss_dssp ------E---TT--HHHHHHHHHHH---TSSEEEEEE--TTSBT--SS-B-SS-HHHHHHHHHHH-T-SEEEE----G--
T ss_pred CCCCCeEEeECCccHHHHHHHHHHhccCCCCEEEEEECCCcccC--CC-eeeCCHHHHHHHHHHc-CCCEEEEC-CCccc
Confidence 45555667899999999999999997542 34445555456654 54 4699999999999999 99999965 432
Q ss_pred ---------ChHHHHHhcCCcEEEEcCCC
Q psy11147 165 ---------ITADMLSQLRVDIVCRGLAA 184 (279)
Q Consensus 165 ---------~~~e~i~~~~id~vV~G~d~ 184 (279)
-...++..+++|.++.|.+.
T Consensus 76 ~qsA~~FA~gaV~lL~~lgvd~l~FGsE~ 104 (388)
T PF05636_consen 76 LQSAEYFARGAVSLLNALGVDYLSFGSES 104 (388)
T ss_dssp -----------------------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 12235678899999999865
No 69
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=97.98 E-value=2.4e-05 Score=75.04 Aligned_cols=90 Identities=24% Similarity=0.280 Sum_probs=67.3
Q ss_pred eEEEEcCccCCCCHHHHHHHHHHHHc-C-CeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhcCCccEEEEcCCCC--
Q psy11147 89 RIVYVDGAYDLFHPGHLDFLEKAKQA-G-DYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACKYVDEVVIGAPYT-- 164 (279)
Q Consensus 89 ~iV~v~G~FDlfH~GHi~~L~~A~~~-g-d~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~k~VD~Vvi~~p~~-- 164 (279)
+.+=+.-.||+||.||+.+|++|+++ + |..++++..| .++ .|. .+|.+-.+|..+.+++ ++|.||.. |+.
T Consensus 2 ~~~Gii~eyNPfHnGH~y~i~~Ar~~~~~d~~i~~msgd-f~q--Rge-pai~~k~~r~~~aL~~-g~D~VIel-P~~~s 75 (358)
T COG1323 2 KSIGIIAEYNPFHNGHQYHINKAREEFKGDEIIAVMSGD-FTQ--RGE-PAIGHKWERKKMALEG-GADLVIEL-PLERS 75 (358)
T ss_pred CceeeeeecCcccccHHHHHHHHHHhccCCceEEeeecc-hhh--cCC-CccccHHHHHhhhhhc-CceEEEEc-ceEEe
Confidence 33445567999999999999999973 3 4566666666 443 344 5799999999999999 89999986 543
Q ss_pred ---------ChHHHHHhcCCcEEEEcCCC
Q psy11147 165 ---------ITADMLSQLRVDIVCRGLAA 184 (279)
Q Consensus 165 ---------~~~e~i~~~~id~vV~G~d~ 184 (279)
-....+..+++|.|+.|...
T Consensus 76 ~q~a~~fa~~av~il~~l~~~~i~fgse~ 104 (358)
T COG1323 76 GQGAPYFATRAVRILNALGGDDIAFGSPP 104 (358)
T ss_pred cCCCchhhHHHHHHHHhcCCCeEEEeCCC
Confidence 11235567889999988765
No 70
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=97.92 E-value=3.1e-05 Score=72.26 Aligned_cols=66 Identities=21% Similarity=0.205 Sum_probs=53.2
Q ss_pred EEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhc-cCCCCCCCCHHHHHHHHHhcCCccEEEEc
Q psy11147 91 VYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWY-KGYGYPIMNLHERVLSVLACKYVDEVVIG 160 (279)
Q Consensus 91 V~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~-Kg~~~pi~s~~ER~~~v~~~k~VD~Vvi~ 160 (279)
|.+.|. +|.||+.+|++|++.++.+||.|..++.--.. ......+++++++.++++++ +||.+++.
T Consensus 27 VpTmG~---LH~GH~~LI~~a~~~a~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~-GVD~vf~P 93 (282)
T TIGR00018 27 VPTMGN---LHDGHMSLIDRAVAENDVVVVSIFVNPMQFGPNEDLEAYPRTLEEDCALLEKL-GVDVVFAP 93 (282)
T ss_pred EECCCc---ccHHHHHHHHHHHHhCCeEEEEecCChHHhCCccccccCCCCHHHHHHHHHHc-CCCEEECC
Confidence 557788 99999999999999999999999998854211 11123578999999999999 89988764
No 71
>PLN02660 pantoate--beta-alanine ligase
Probab=97.89 E-value=3.4e-05 Score=72.02 Aligned_cols=66 Identities=21% Similarity=0.176 Sum_probs=53.4
Q ss_pred EEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhc-cCCCCCCCCHHHHHHHHHhcCCccEEEEc
Q psy11147 91 VYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWY-KGYGYPIMNLHERVLSVLACKYVDEVVIG 160 (279)
Q Consensus 91 V~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~-Kg~~~pi~s~~ER~~~v~~~k~VD~Vvi~ 160 (279)
|.+.|. +|.||+.++++|++.++.+||.|..++.--.. ......++++++++.+++++ +||.|+..
T Consensus 26 VpTmG~---LH~GH~~LI~~a~~~a~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~-GVD~vf~P 92 (284)
T PLN02660 26 VPTMGY---LHEGHLSLVRAARARADVVVVSIYVNPGQFAPGEDLDTYPRDFDGDLRKLAAL-GVDAVFNP 92 (284)
T ss_pred EEcCch---hhHHHHHHHHHHHHhCCEEEEEEeCChHHcCCccccccCCCCHHHHHHHHHHc-CCCEEECC
Confidence 667788 99999999999999999999999998864211 11124578999999999999 89988763
No 72
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=97.84 E-value=4.2e-06 Score=71.24 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=32.6
Q ss_pred CCCCCCCCCCCCCCeeeeccCCCcchhhHHHHHHh
Q psy11147 5 PPRPPLIRPWVPTRTMEVQRTAGVSTTDLVGRMLS 39 (279)
Q Consensus 5 ~~~~~~~~~~~~gr~~~vkRT~gVSTTdivgRmL~ 39 (279)
++.|+|..++++|+|++++||+|+|||+||+|||.
T Consensus 105 ~~~~~~~~~~~~G~~~~v~~~~~~Sts~Ii~rI~~ 139 (152)
T cd02173 105 DGEDPYAVPKEMGIFKEIDSGSDLTTRDIVNRIIK 139 (152)
T ss_pred CchHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence 45788999999999999999999999999999984
No 73
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=97.77 E-value=0.00029 Score=61.54 Aligned_cols=117 Identities=16% Similarity=0.206 Sum_probs=77.2
Q ss_pred ccCCCCHHHHHHHHHHHHcCCeE-EEEEcCChhhhhccCCCCCCCCHHHHHHHHHh-cCCccEEEEcC--CCC-----Ch
Q psy11147 96 AYDLFHPGHLDFLEKAKQAGDYL-IVGIHPDHVVAWYKGYGYPIMNLHERVLSVLA-CKYVDEVVIGA--PYT-----IT 166 (279)
Q Consensus 96 ~FDlfH~GHi~~L~~A~~~gd~L-IVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~-~k~VD~Vvi~~--p~~-----~~ 166 (279)
.-.+|+.||.-|+++|++.+|.| |+.|..|. .+++.++|..+|++ ++..+.|.+.. +|- .+
T Consensus 7 NaNPFT~GH~yLiE~Aa~~~d~l~vFVV~eD~----------S~Fpf~~R~~LVk~G~~~L~NV~V~~~g~YiIS~aTFP 76 (182)
T PF08218_consen 7 NANPFTLGHRYLIEQAAKECDWLHVFVVSEDR----------SLFPFADRYELVKEGTADLPNVTVHPGGDYIISSATFP 76 (182)
T ss_pred cCCCCccHHHHHHHHHHHhCCEEEEEEEcccc----------CcCCHHHHHHHHHHHhCcCCCEEEEcCCCeeeecccCh
Confidence 45799999999999999999976 55566552 57999999999986 67777776532 221 00
Q ss_pred ----------------HH-------HHHhcCCcEEEEcCCCCCCCCCCCChhH--H----HHhCCeEEEeC----CCCCC
Q psy11147 167 ----------------AD-------MLSQLRVDIVCRGLAAVLPDETGRDPYS--E----AKKLGKFKLID----SGNTT 213 (279)
Q Consensus 167 ----------------~e-------~i~~~~id~vV~G~d~~~~~~~~~d~~~--~----~k~~G~~~~i~----~~~~I 213 (279)
.| +...++|..-..|.++...- ...|. + +..+=.+.+|+ .+..|
T Consensus 77 sYFlK~~~~~~~~~~~lD~~iF~~~IAp~L~It~RfVG~EP~~~v---T~~YN~~M~~~Lp~~gi~v~ei~R~~~~g~~I 153 (182)
T PF08218_consen 77 SYFLKDEDDVIKAQAELDATIFKKYIAPALGITKRFVGEEPFSPV---TRIYNEAMKEILPPYGIEVVEIPRKEINGEPI 153 (182)
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHhhHhcCcccceeCCCCCCHH---HHHHHHHHHHhccccCCEEEEEecccCCCcEE
Confidence 00 12356888888888764321 11121 1 22222355565 45799
Q ss_pred CHHHHHHHHHHh
Q psy11147 214 TTEKIVDRIVFH 225 (279)
Q Consensus 214 SSt~I~~rI~~~ 225 (279)
|.|..|+.|.+.
T Consensus 154 SAS~VR~~l~~~ 165 (182)
T PF08218_consen 154 SASRVRKLLKEG 165 (182)
T ss_pred cHHHHHHHHHcC
Confidence 999999998764
No 74
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=97.63 E-value=1.6e-05 Score=67.59 Aligned_cols=37 Identities=41% Similarity=0.370 Sum_probs=33.4
Q ss_pred CCCCCCCCCCCCCeeeeccCCCcchhhHHHHHHhhcc
Q psy11147 6 PRPPLIRPWVPTRTMEVQRTAGVSTTDLVGRMLSMTS 42 (279)
Q Consensus 6 ~~~~~~~~~~~gr~~~vkRT~gVSTTdivgRmL~~~~ 42 (279)
..|+|..++++|++++++||+|+|||+|+.||+....
T Consensus 104 ~~~~~~~~~~~g~~~~~~~~~~~Stt~ii~rI~~~~~ 140 (150)
T cd02174 104 GEDCYQEVKDAGRFKEVKRTEGVSTTDLIGRILLDYR 140 (150)
T ss_pred chhHHHHHHhCCEEEEeCCCCCCCHHHHHHHHHHhHH
Confidence 4688999999999999999999999999999996544
No 75
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=96.53 E-value=0.0091 Score=56.08 Aligned_cols=65 Identities=20% Similarity=0.292 Sum_probs=52.9
Q ss_pred CCCCeEEEEcCccCCCCHHHHHHHHHHHHcCCeE-EEEEcCChhhhhccCCCCCCCCHHHHHHHHHh-cCCccEEEE
Q psy11147 85 KPTDRIVYVDGAYDLFHPGHLDFLEKAKQAGDYL-IVGIHPDHVVAWYKGYGYPIMNLHERVLSVLA-CKYVDEVVI 159 (279)
Q Consensus 85 ~~~~~iV~v~G~FDlfH~GHi~~L~~A~~~gd~L-IVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~-~k~VD~Vvi 159 (279)
.+|.++..+.-.-.||..||.-++++|.+.||.| ++.|..|. ..++.++|..+|+. .++.+.|.+
T Consensus 142 ~~gkkIgaIVMNANPFTLGH~YLVEqAaaqcDwlHLFvV~eD~----------S~f~y~~R~~Lv~~G~~~l~Nvt~ 208 (352)
T COG3053 142 HPGKKIGAIVMNANPFTLGHRYLVEQAAAQCDWLHLFVVKEDS----------SLFPYEDRLDLVKKGTADLPNVTV 208 (352)
T ss_pred cCCCeeEEEEEeCCCccchhHHHHHHHHhhCCEEEEEEEeccc----------ccCCHHHHHHHHHHhhccCCceEE
Confidence 4577899999999999999999999999999965 55666663 46899999999875 666666544
No 76
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=96.06 E-value=0.014 Score=54.59 Aligned_cols=71 Identities=23% Similarity=0.308 Sum_probs=40.5
Q ss_pred CCeEEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccC--CCCCCCCHHHHHHHHHhcCCccEEEEc
Q psy11147 87 TDRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKG--YGYPIMNLHERVLSVLACKYVDEVVIG 160 (279)
Q Consensus 87 ~~~iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg--~~~pi~s~~ER~~~v~~~k~VD~Vvi~ 160 (279)
+.++++|+ +-=-+|-||+.|+++|++.+|.+||.|.-++.--.... ..|| -+++.=+++++++ +||.|+..
T Consensus 21 ~~~igfVP-TMGaLHeGHlsLi~~A~~~~d~vVVSIFVNP~QF~~~eD~~~YP-R~~e~D~~ll~~~-gvD~vF~P 93 (280)
T PF02569_consen 21 GKTIGFVP-TMGALHEGHLSLIRRARAENDVVVVSIFVNPTQFGPNEDFDKYP-RTLERDLELLEKA-GVDAVFAP 93 (280)
T ss_dssp TSSEEEEE-E-SS--HHHHHHHHHHHHHSSEEEEEE---GGGSSTTSHTTTS----HHHHHHHHHHT-T-SEEE--
T ss_pred CCeEEEEC-CCchhhHHHHHHHHHHHhCCCEEEEEECcCcccCCCcchhhhCC-CChHHHHHHHhcc-CCCEEEcC
Confidence 34555543 44446999999999999999999999987774211110 0245 3556666777777 89988763
No 77
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=95.77 E-value=0.02 Score=57.71 Aligned_cols=67 Identities=24% Similarity=0.360 Sum_probs=48.1
Q ss_pred eEEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhh----ccCCCCCCCCHHHHHHHHHhcCCccEEEEc
Q psy11147 89 RIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAW----YKGYGYPIMNLHERVLSVLACKYVDEVVIG 160 (279)
Q Consensus 89 ~iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~----~Kg~~~pi~s~~ER~~~v~~~k~VD~Vvi~ 160 (279)
++++| -+-=-+|-||+.|+++|++.+|.+||.|.-++.--. +. .|| =+++.=+++++++ +||.|+..
T Consensus 21 ~ig~V-PTMG~LH~GHlsLi~~A~~~~d~vVvSIFVNP~QF~~~eD~~--~YP-r~~~~D~~~l~~~-gvd~vf~P 91 (512)
T PRK13477 21 TIGFV-PTMGALHQGHLSLIRRARQENDVVLVSIFVNPLQFGPNEDLE--RYP-RTLEADRELCESA-GVDAIFAP 91 (512)
T ss_pred cEEEE-CCCcchhHHHHHHHHHHHHhCCEEEEEEccCcccCCCchhhh--hCC-CCHHHHHHHHHhc-CCCEEECC
Confidence 45554 466678999999999999999999999966653111 11 245 3566667777777 89988763
No 78
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=95.15 E-value=0.12 Score=50.38 Aligned_cols=94 Identities=12% Similarity=0.049 Sum_probs=63.3
Q ss_pred CCCeEEEEcCccCCCCHHHHHHHHHHHHc--CCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhc-C-Cc--cEEEE
Q psy11147 86 PTDRIVYVDGAYDLFHPGHLDFLEKAKQA--GDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLAC-K-YV--DEVVI 159 (279)
Q Consensus 86 ~~~~iV~v~G~FDlfH~GHi~~L~~A~~~--gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~-k-~V--D~Vvi 159 (279)
.|.+.|+..=+||++|.||..+++.|.+. +|.|+|-...-+ .|. -.++.+-|+++++.+ . +- |.+++
T Consensus 181 ~gw~~Vvafqt~nPiHr~H~~l~~~a~e~l~~d~lll~P~~g~----~k~---~~~~~~~R~~~~~~~~~~~~~~~~~~l 253 (383)
T TIGR00339 181 RGWDTVVAFQTRNPMHRAHEELTKRAARSLPNAGVLVHPLVGL----TKP---GDIPAEVRMRAYEVLKEGYPNPERVML 253 (383)
T ss_pred cCCCeEEEeccCCCCchHHHHHHHHHHHHcCCCeEEEEeCCCC----CCC---CCCCHHHHHHHHHHHHhhCCCCCceEE
Confidence 45567888999999999999999999987 676655554332 232 368999999998875 2 22 23433
Q ss_pred c-CCCC----ChHH------HHHhcCCcEEEEcCCCCC
Q psy11147 160 G-APYT----ITAD------MLSQLRVDIVCRGLAAVL 186 (279)
Q Consensus 160 ~-~p~~----~~~e------~i~~~~id~vV~G~d~~~ 186 (279)
. .|+. -+.+ +-+.|+..+++.|.|...
T Consensus 254 ~~~~~em~~agpreall~Aiir~nyG~th~IiG~Dhag 291 (383)
T TIGR00339 254 TFLPLAMRYAGPREAIWHAIIRKNYGATHFIVGRDHAG 291 (383)
T ss_pred EecchHhhcCCcHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 2 1322 1223 225688999999988643
No 79
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=94.41 E-value=0.11 Score=48.45 Aligned_cols=68 Identities=26% Similarity=0.359 Sum_probs=46.8
Q ss_pred CCCeEEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCC-----CCCCCCHHHHHHHHHhcCCccEEEE
Q psy11147 86 PTDRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGY-----GYPIMNLHERVLSVLACKYVDEVVI 159 (279)
Q Consensus 86 ~~~~iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~-----~~pi~s~~ER~~~v~~~k~VD~Vvi 159 (279)
.|+++++++ +---+|-||+.|+++|++.+|.+||.|.-++.- -|+ +|| =+++.=.+.++.. +||.++.
T Consensus 20 ~gk~Vg~VP-TMG~LH~GHlsLVr~A~~~~d~VVVSIFVNP~Q---Fg~~EDl~~YP-R~l~~D~~~le~~-gvd~vF~ 92 (285)
T COG0414 20 EGKRVGLVP-TMGNLHEGHLSLVRRAKKENDVVVVSIFVNPLQ---FGPNEDLDRYP-RTLERDLELLEKE-GVDIVFA 92 (285)
T ss_pred cCCEEEEEc-CCcccchHHHHHHHHHhhcCCeEEEEEEeChhh---cCCchhhhhCC-CCHHHHHHHHHhc-CCcEEeC
Confidence 455666655 666789999999999999999999999877742 121 244 2344444444444 8998774
No 80
>KOG3042|consensus
Probab=91.85 E-value=0.42 Score=43.35 Aligned_cols=82 Identities=20% Similarity=0.286 Sum_probs=52.3
Q ss_pred hhhhhcccCCCCCCCCeEEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhh--ccCCCCCCCCHHHHHHHHHh
Q psy11147 73 EKIRQFSEGRQPKPTDRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAW--YKGYGYPIMNLHERVLSVLA 150 (279)
Q Consensus 73 ~~i~~fs~~~~~~~~~~iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~--~Kg~~~pi~s~~ER~~~v~~ 150 (279)
..+.|++..- ...|.++.+++ +.-.+|-||..+++++.+..++.+|.|.-++.--. ..-.+|| -++.+-+..+++
T Consensus 10 ~~v~qw~~~~-R~~g~tIgfVP-TMG~LHeGH~SLvrqs~~~~~~tVVSIfVNP~QF~pteDL~~YP-rt~~~D~~~L~~ 86 (283)
T KOG3042|consen 10 EEVVQWTQEL-RETGETIGFVP-TMGCLHEGHASLVRQSVKENTYTVVSIFVNPSQFAPTEDLDNYP-RTLPDDIKLLES 86 (283)
T ss_pred HHHHHHHHHH-HhcCCeEEEec-ccccccccHHHHHHHHHhhCceEEEEEEechhhcCChhHhhcCC-ccCccHHHHHHh
Confidence 3455554431 12355676665 56678999999999999999999999987764211 1111234 234445666777
Q ss_pred cCCccEEE
Q psy11147 151 CKYVDEVV 158 (279)
Q Consensus 151 ~k~VD~Vv 158 (279)
+ +||-|+
T Consensus 87 L-gvdvvf 93 (283)
T KOG3042|consen 87 L-GVDVVF 93 (283)
T ss_pred c-CceEEE
Confidence 7 788665
No 81
>cd00517 ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be
Probab=88.78 E-value=2.9 Score=40.48 Aligned_cols=93 Identities=17% Similarity=0.182 Sum_probs=62.0
Q ss_pred CCCeEEEEcCccCCCCHHHHHHHHHHHHcC--CeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhc--CCc--cEEEE
Q psy11147 86 PTDRIVYVDGAYDLFHPGHLDFLEKAKQAG--DYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLAC--KYV--DEVVI 159 (279)
Q Consensus 86 ~~~~iV~v~G~FDlfH~GHi~~L~~A~~~g--d~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~--k~V--D~Vvi 159 (279)
.|.+.|+..=+-+++|.||..+++.|.+.+ +.|+|-.- +-..|. --++.+-|+++.+++ .|. |.+++
T Consensus 154 ~gw~~VvafqtrnP~HraHe~l~~~a~~~~~~~~lll~pl----vG~~k~---~d~~~~~r~~~~~~l~~~y~~~~~~~l 226 (353)
T cd00517 154 RGWRRVVAFQTRNPMHRAHEELMKRAAEKLLNDGLLLHPL----VGWTKP---GDVPDEVRMRAYEALLEEYYLPERTVL 226 (353)
T ss_pred cCCCeEEEeecCCCCchhhHHHHHHHHHHcCCCcEEEEec----cCCCCC---CCCCHHHHHHHHHHHHHhCCCCCcEEE
Confidence 455678888999999999999999999876 54433221 111222 247889999888876 355 66655
Q ss_pred cC-CCC----ChHH-----HH-HhcCCcEEEEcCCCC
Q psy11147 160 GA-PYT----ITAD-----ML-SQLRVDIVCRGLAAV 185 (279)
Q Consensus 160 ~~-p~~----~~~e-----~i-~~~~id~vV~G~d~~ 185 (279)
.. |+. -+.| .+ +.+++..++.|-|+.
T Consensus 227 ~~lp~~mryAGPrEallhAiirkN~GcThfIvGrDHA 263 (353)
T cd00517 227 AILPLPMRYAGPREALWHAIIRKNYGATHFIVGRDHA 263 (353)
T ss_pred EeccchhcccCcHHHHHHHHHHHhCCCCeEEECCCCC
Confidence 31 222 2233 22 578999999998864
No 82
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=84.48 E-value=4.2 Score=39.93 Aligned_cols=93 Identities=17% Similarity=0.090 Sum_probs=61.5
Q ss_pred CCCeEEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhc-C-C--ccEEEEc-
Q psy11147 86 PTDRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLAC-K-Y--VDEVVIG- 160 (279)
Q Consensus 86 ~~~~iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~-k-~--VD~Vvi~- 160 (279)
.|.+.|+..=+-+++|.||..+.+.|.+.+|.|++-. .+...|. --++.+-|+.+.+++ . | -+.|++.
T Consensus 184 ~gw~~VvafqTrnP~HraHe~l~~~a~e~~d~lll~p----lvG~~k~---~di~~~~r~~~~~~~~~~y~p~~~v~l~~ 256 (391)
T PRK04149 184 KGWKTVVAFQTRNPPHRAHEYLQKCALEIVDGLLLNP----LVGETKS---GDIPAEVRMEAYEALLKNYYPKDRVLLSV 256 (391)
T ss_pred cCCCeEEEeecCCCCchHHHHHHHHHHHhcCeEEEec----CcCCCCC---CCCCHHHHHHHHHHHHHhcCCCCcEEEEe
Confidence 4557788888999999999999999999999544422 2212232 247889999988876 2 2 2244432
Q ss_pred CCCC----ChHH-----HH-HhcCCcEEEEcCCCC
Q psy11147 161 APYT----ITAD-----ML-SQLRVDIVCRGLAAV 185 (279)
Q Consensus 161 ~p~~----~~~e-----~i-~~~~id~vV~G~d~~ 185 (279)
-|+. -+.| .+ +.+++..++.|-|+.
T Consensus 257 lp~~mryAGPrEa~lhAivrkN~GcTh~IvGrDHA 291 (391)
T PRK04149 257 TPAAMRYAGPREAIFHAIVRKNYGCTHFIVGRDHA 291 (391)
T ss_pred ccchhcccCcHHHHHHHHHHHhCCCCeEEECCCCC
Confidence 1211 2233 22 578999999998864
No 83
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=83.09 E-value=0.38 Score=47.87 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=26.5
Q ss_pred CCeEEEEcCccCCCCHHHHHHHHHHHHcC
Q psy11147 87 TDRIVYVDGAYDLFHPGHLDFLEKAKQAG 115 (279)
Q Consensus 87 ~~~iV~v~G~FDlfH~GHi~~L~~A~~~g 115 (279)
+.+.++..|+||.+|.||+.+|.+|..-|
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (470)
T PLN02341 413 NEDDTFWAELLKNSDCSEISFLSKMAING 441 (470)
T ss_pred CcchhHHHHhhcccccchhhhhhhhhhcc
Confidence 56889999999999999999999998766
No 84
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=79.83 E-value=4.3 Score=39.60 Aligned_cols=95 Identities=17% Similarity=0.050 Sum_probs=62.6
Q ss_pred CCCCeEEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhc--C-C-ccEEEEc
Q psy11147 85 KPTDRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLAC--K-Y-VDEVVIG 160 (279)
Q Consensus 85 ~~~~~iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~--k-~-VD~Vvi~ 160 (279)
..+.++|++.-+++++|.||-.+.+.|...+|.|+|-. .|-..|.. =+..+-|++..+.+ . | =|.+++.
T Consensus 180 ~kgwk~vvafQTRNp~HraHEyl~K~Al~~vdgllv~p----lVG~tk~g---D~~~e~rm~~ye~l~~~Yyp~dr~~Ls 252 (397)
T COG2046 180 EKGWKTVVAFQTRNPPHRAHEYLQKRALEKVDGLLVHP----LVGATKPG---DIPDEVRMEYYEALLKHYYPPDRVFLS 252 (397)
T ss_pred hcCCeEEEEEecCCCchHHHHHHHHHHHHhcCcEEEEe----eeccccCC---CchHHHHHHHHHHHHHhCCCCCcEEEE
Confidence 35679999999999999999999999999999543221 11112222 24567787776665 2 3 4566653
Q ss_pred C-CCC----ChHH-----HH-HhcCCcEEEEcCCCCC
Q psy11147 161 A-PYT----ITAD-----ML-SQLRVDIVCRGLAAVL 186 (279)
Q Consensus 161 ~-p~~----~~~e-----~i-~~~~id~vV~G~d~~~ 186 (279)
. |+. -+.| +| +.+++...++|-|...
T Consensus 253 ~~~~aMRyagPrEa~~HaIIRkNyGcTHfIVGRDHAG 289 (397)
T COG2046 253 VLPAAMRYAGPREALLHAIIRKNYGCTHFIVGRDHAG 289 (397)
T ss_pred ecHHHhhhcCcHHHHHHHHHHhhcCCeeeeecCCCCC
Confidence 1 221 1222 33 4689999999998754
No 85
>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2.7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....
Probab=77.90 E-value=7.3 Score=35.12 Aligned_cols=93 Identities=16% Similarity=0.091 Sum_probs=54.3
Q ss_pred CCeEEEEcCccCCCCHHHHHHHHHHHHcC-CeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhc--CC--ccEEEEc-
Q psy11147 87 TDRIVYVDGAYDLFHPGHLDFLEKAKQAG-DYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLAC--KY--VDEVVIG- 160 (279)
Q Consensus 87 ~~~iV~v~G~FDlfH~GHi~~L~~A~~~g-d~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~--k~--VD~Vvi~- 160 (279)
|.+.|+..=+-+++|.||..+++.|.+.+ |.|+|-.--- ..|. --++.+-|+.+.+.+ .| -|.|++.
T Consensus 19 gw~~VvafqtrnPlHraHe~l~~~a~e~~~~~lll~plvG----~~k~---~d~~~~~r~~~~~~~~~~y~p~~~v~l~~ 91 (215)
T PF01747_consen 19 GWRRVVAFQTRNPLHRAHEYLMRRALEKAGDGLLLHPLVG----PTKP---GDIPYEVRVRCYEALIDNYFPKNRVLLSP 91 (215)
T ss_dssp T-SSEEEEEESS---HHHHHHHHHHHHHHTSEEEEEEBES----B-ST---TSCCHHHHHHHHHHHHHHCSSTTGEEEEB
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCcEEEEeccC----CCCc---CCCCHHHHHHHHHHHHHHhCCCCcEEEec
Confidence 33456666679999999999999999875 7554433221 2232 247899999888875 22 3556553
Q ss_pred CCCC----ChHH-----HH-HhcCCcEEEEcCCCCC
Q psy11147 161 APYT----ITAD-----ML-SQLRVDIVCRGLAAVL 186 (279)
Q Consensus 161 ~p~~----~~~e-----~i-~~~~id~vV~G~d~~~ 186 (279)
-|+. -+.| .+ +.+++..++.|-|...
T Consensus 92 lp~~mr~aGPrEallhAiirkN~GcTh~IvGrdhAg 127 (215)
T PF01747_consen 92 LPLPMRYAGPREALLHAIIRKNYGCTHFIVGRDHAG 127 (215)
T ss_dssp BESB---SHHHHHHHHHHHHHHTT-SEEEE-TTTT-
T ss_pred cCchhcccCcHHHHHHHHHHHHCCCceEEeCCcCCC
Confidence 1222 2233 22 5789999999998754
No 86
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=75.65 E-value=11 Score=38.59 Aligned_cols=94 Identities=16% Similarity=0.065 Sum_probs=61.2
Q ss_pred CCCeEEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhcC--C-ccEEEEcCC
Q psy11147 86 PTDRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACK--Y-VDEVVIGAP 162 (279)
Q Consensus 86 ~~~~iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~k--~-VD~Vvi~~p 162 (279)
.|.+.|+..=+-+++|.||..+++.|.+.+|- .|-++ +.+-..|. --++.+-|+.+.+.+. + -|.+++. +
T Consensus 184 ~gw~~v~afqtrnP~Hr~He~l~~~a~~~~d~-~lll~--p~~G~~k~---~d~~~~~r~~~~~~~~~~~p~~~~~l~-~ 256 (568)
T PRK05537 184 LGWRRVVAFQTRNPLHRAHEELTKRAAREVGA-NLLIH--PVVGMTKP---GDIDHFTRVRCYEALLDKYPPATTLLS-L 256 (568)
T ss_pred cCCCcEEEEecCCCCcHHHHHHHHHHHHhcCC-eEEEe--cCCCCCCC---CCCCHHHHHHHHHHHHHhCCCCcEEEE-e
Confidence 35567888899999999999999999998872 22333 23322232 2578899998877761 2 2334432 2
Q ss_pred CC------ChHH-----HH-HhcCCcEEEEcCCCCC
Q psy11147 163 YT------ITAD-----ML-SQLRVDIVCRGLAAVL 186 (279)
Q Consensus 163 ~~------~~~e-----~i-~~~~id~vV~G~d~~~ 186 (279)
+. -+.| .+ +.+++..++.|-|+..
T Consensus 257 ~p~~mryaGpreai~hAi~r~N~Gcth~ivGrdhAg 292 (568)
T PRK05537 257 LPLAMRMAGPREALWHAIIRRNYGCTHFIVGRDHAG 292 (568)
T ss_pred ccchhcccCcHHHHHHHHHHHhCCCCeEEECCCCCC
Confidence 22 2223 12 5789999999988654
No 87
>KOG3199|consensus
Probab=68.69 E-value=19 Score=32.63 Aligned_cols=72 Identities=21% Similarity=0.250 Sum_probs=47.7
Q ss_pred eEEEEcCccCCCCHHHHHHHHHHHHc----CC-eEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHh-cCCccEEEEcCC
Q psy11147 89 RIVYVDGAYDLFHPGHLDFLEKAKQA----GD-YLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLA-CKYVDEVVIGAP 162 (279)
Q Consensus 89 ~iV~v~G~FDlfH~GHi~~L~~A~~~----gd-~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~-~k~VD~Vvi~~p 162 (279)
-..++.|+|.++..+|+++++-|+.. +. .++=|+-+ |.--.||.+ -+.+..-|+.+++. |..-|.+-+ +.
T Consensus 9 v~l~A~gSFNpiT~~HLrmfElAkd~l~~t~~~~Vv~GimS-PV~DaYkKK--gLipa~hrv~~~ElAt~~Skwl~v-D~ 84 (234)
T KOG3199|consen 9 VVLLACGSFNPITNLHLRMFELAKDYLNETGRYRVVKGIMS-PVGDAYKKK--GLIPAYHRVRMVELATETSKWLMV-DG 84 (234)
T ss_pred EEEEEecccCchhHHHHHHHHHHHHHHhccCCeEEEeeEec-ccchhhhcc--ccchhhhHHHHHHhhhccccceec-ch
Confidence 45667899999999999999999953 23 35555544 222235543 58889999999885 443333433 34
Q ss_pred CC
Q psy11147 163 YT 164 (279)
Q Consensus 163 ~~ 164 (279)
|.
T Consensus 85 we 86 (234)
T KOG3199|consen 85 WE 86 (234)
T ss_pred hh
Confidence 54
No 88
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=46.43 E-value=74 Score=29.73 Aligned_cols=64 Identities=31% Similarity=0.413 Sum_probs=44.9
Q ss_pred EEEcCccCC-CCHHHHHHHHHHHHcC-CeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhc--CCccEEEEcCCCCCh
Q psy11147 91 VYVDGAYDL-FHPGHLDFLEKAKQAG-DYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLAC--KYVDEVVIGAPYTIT 166 (279)
Q Consensus 91 V~v~G~FDl-fH~GHi~~L~~A~~~g-d~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~--k~VD~Vvi~~p~~~~ 166 (279)
+++.+++.+ ||.|=-+++++|++.| |.|+| |=++.+|.......| .++|.|.+.+| +.+
T Consensus 97 ivlm~Y~Npi~~~Gie~F~~~~~~~GvdGliv----------------pDLP~ee~~~~~~~~~~~gi~~I~lvaP-tt~ 159 (265)
T COG0159 97 IVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLV----------------PDLPPEESDELLKAAEKHGIDPIFLVAP-TTP 159 (265)
T ss_pred EEEEEeccHHHHhhHHHHHHHHHHcCCCEEEe----------------CCCChHHHHHHHHHHHHcCCcEEEEeCC-CCC
Confidence 556788888 8999999999999988 55554 224566666665555 37888888777 444
Q ss_pred HHHHH
Q psy11147 167 ADMLS 171 (279)
Q Consensus 167 ~e~i~ 171 (279)
.+.++
T Consensus 160 ~~rl~ 164 (265)
T COG0159 160 DERLK 164 (265)
T ss_pred HHHHH
Confidence 45554
No 89
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=44.32 E-value=1.1e+02 Score=28.28 Aligned_cols=72 Identities=28% Similarity=0.328 Sum_probs=47.9
Q ss_pred EEEcCccCC-CCHHHHHHHHHHHHcC-CeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhcC--CccEEEEcCCCCCh
Q psy11147 91 VYVDGAYDL-FHPGHLDFLEKAKQAG-DYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACK--YVDEVVIGAPYTIT 166 (279)
Q Consensus 91 V~v~G~FDl-fH~GHi~~L~~A~~~g-d~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~k--~VD~Vvi~~p~~~~ 166 (279)
+++.++|.+ +|.|=-++++.|++.| |.+|| +| ++++|....+..|+ +++.|.+.+|-+..
T Consensus 92 ~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGvii---pD-------------Lp~ee~~~~~~~~~~~gl~~I~lvap~t~~ 155 (258)
T PRK13111 92 IVLMTYYNPIFQYGVERFAADAAEAGVDGLII---PD-------------LPPEEAEELRAAAKKHGLDLIFLVAPTTTD 155 (258)
T ss_pred EEEEecccHHhhcCHHHHHHHHHHcCCcEEEE---CC-------------CCHHHHHHHHHHHHHcCCcEEEEeCCCCCH
Confidence 357899988 5669999999999988 46666 33 34466666666663 67888766664432
Q ss_pred H--HHHHhcCCcEE
Q psy11147 167 A--DMLSQLRVDIV 178 (279)
Q Consensus 167 ~--e~i~~~~id~v 178 (279)
+ ..+.+...++|
T Consensus 156 eri~~i~~~s~gfI 169 (258)
T PRK13111 156 ERLKKIASHASGFV 169 (258)
T ss_pred HHHHHHHHhCCCcE
Confidence 2 23345566654
No 90
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=35.55 E-value=1.5e+02 Score=33.35 Aligned_cols=76 Identities=18% Similarity=0.135 Sum_probs=51.0
Q ss_pred CCeEEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCC-CCCCCCHHHHHHHHHhcCCccEEEEc--CCC
Q psy11147 87 TDRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGY-GYPIMNLHERVLSVLACKYVDEVVIG--APY 163 (279)
Q Consensus 87 ~~~iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~-~~pi~s~~ER~~~v~~~k~VD~Vvi~--~p~ 163 (279)
++.+|-+.|..-.||.|...++.....-.+-+++-+.+|.+. ..-|. +.-.++.++=...++++ +|+.|++. +|+
T Consensus 486 ~~~v~a~iGDgTf~HSG~~al~~AV~~~~nit~~IL~N~~tA-MTGgQp~~g~i~v~~i~~~~~a~-Gv~~v~vvsddp~ 563 (1159)
T PRK13030 486 TKHVFQNLGDGTYFHSGSLAIRQAVAAGANITYKILYNDAVA-MTGGQPVDGSISVPQIARQVEAE-GVSRIVVVSDEPE 563 (1159)
T ss_pred CCCEEEEeccchhhhcCHHHHHHHHhcCCCeEEEEEeCCccc-ccCCCCCCCCCCHHHHHHHHHhC-CCcEEEEecCChh
Confidence 456788999999999999977776665555455555555443 32222 11246777767778888 89998775 565
Q ss_pred C
Q psy11147 164 T 164 (279)
Q Consensus 164 ~ 164 (279)
.
T Consensus 564 ~ 564 (1159)
T PRK13030 564 K 564 (1159)
T ss_pred h
Confidence 5
No 91
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=32.64 E-value=1.3e+02 Score=27.92 Aligned_cols=63 Identities=24% Similarity=0.422 Sum_probs=41.4
Q ss_pred EEEcCccCC-CCHHHHHHHHHHHHcC-CeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhcC--CccEEEEcCCCCCh
Q psy11147 91 VYVDGAYDL-FHPGHLDFLEKAKQAG-DYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACK--YVDEVVIGAPYTIT 166 (279)
Q Consensus 91 V~v~G~FDl-fH~GHi~~L~~A~~~g-d~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~k--~VD~Vvi~~p~~~~ 166 (279)
+++-+++.+ |+.|=-++++.|++.| |.|+| |=++.+|....+..|+ +++.|.+.+|-+ +
T Consensus 94 ~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgvii----------------pDLP~ee~~~~~~~~~~~gi~~I~lv~PtT-~ 156 (263)
T CHL00200 94 IVIFTYYNPVLHYGINKFIKKISQAGVKGLII----------------PDLPYEESDYLISVCNLYNIELILLIAPTS-S 156 (263)
T ss_pred EEEEecccHHHHhCHHHHHHHHHHcCCeEEEe----------------cCCCHHHHHHHHHHHHHcCCCEEEEECCCC-C
Confidence 347899988 5569999999999988 44543 1233456555555553 678887776644 3
Q ss_pred HHHH
Q psy11147 167 ADML 170 (279)
Q Consensus 167 ~e~i 170 (279)
.+-+
T Consensus 157 ~eri 160 (263)
T CHL00200 157 KSRI 160 (263)
T ss_pred HHHH
Confidence 4434
No 92
>PLN02591 tryptophan synthase
Probab=32.49 E-value=1.6e+02 Score=27.11 Aligned_cols=58 Identities=24% Similarity=0.320 Sum_probs=41.1
Q ss_pred EEEcCccCC-CCHHHHHHHHHHHHcC-CeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhcC--CccEEEEcCCCC
Q psy11147 91 VYVDGAYDL-FHPGHLDFLEKAKQAG-DYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACK--YVDEVVIGAPYT 164 (279)
Q Consensus 91 V~v~G~FDl-fH~GHi~~L~~A~~~g-d~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~k--~VD~Vvi~~p~~ 164 (279)
+++-+++.+ ||.|--+++++|++.| |.||+- | ++.+|.......|+ +++-|.+.+|-+
T Consensus 81 ~ilm~Y~N~i~~~G~~~F~~~~~~aGv~Gviip---D-------------LP~ee~~~~~~~~~~~gl~~I~lv~Ptt 142 (250)
T PLN02591 81 IVLFTYYNPILKRGIDKFMATIKEAGVHGLVVP---D-------------LPLEETEALRAEAAKNGIELVLLTTPTT 142 (250)
T ss_pred EEEEecccHHHHhHHHHHHHHHHHcCCCEEEeC---C-------------CCHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 447899998 5779999999999988 455542 2 34577766666663 677787776633
No 93
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=31.59 E-value=1.5e+02 Score=31.06 Aligned_cols=99 Identities=20% Similarity=0.256 Sum_probs=60.7
Q ss_pred cccCCCCCCCCeEEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCC----------HHHHH-H
Q psy11147 78 FSEGRQPKPTDRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMN----------LHERV-L 146 (279)
Q Consensus 78 fs~~~~~~~~~~iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s----------~~ER~-~ 146 (279)
+++|.....++++|-+.|.+-.||.|=..++..+-.-.+.+++-+.++.+... |. +|.-. .+-.+ +
T Consensus 436 ~a~g~~~~~~k~~va~iGDsTF~HsGi~~l~nAV~n~~~~~~vvLdN~~tAMT--Gg-Qp~pg~~~~~~g~~~~~i~iee 512 (640)
T COG4231 436 IAGGLSFASTKKIVAVIGDSTFFHSGILALINAVYNKANILVVVLDNRTTAMT--GG-QPHPGTGVAAEGTKSTAIVIEE 512 (640)
T ss_pred hccccccccCCceEEEeccccccccCcHHHHHHHhcCCCeEEEEEeccchhcc--CC-CCCCCcccccCCCccceeEhhH
Confidence 44444333446899999999999999999888777777777777777655432 22 34331 11111 3
Q ss_pred HHHhcCCccEEEEcCCCCCh--HHHH----HhcCCcEEEE
Q psy11147 147 SVLACKYVDEVVIGAPYTIT--ADML----SQLRVDIVCR 180 (279)
Q Consensus 147 ~v~~~k~VD~Vvi~~p~~~~--~e~i----~~~~id~vV~ 180 (279)
.++++ +|+.|-..+||+.. .+.+ +.-++.+||-
T Consensus 513 ~~r~~-Gv~~v~~vdp~~~~~~~~~~keale~~gpsViia 551 (640)
T COG4231 513 VVRAM-GVEDVETVDPYDVKELSEAIKEALEVPGPSVIIA 551 (640)
T ss_pred hhhhc-CceeeeccCCcchHHHHHHHHHHhcCCCceEEEE
Confidence 45555 78887766688732 2222 2336666663
No 94
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=28.68 E-value=1.7e+02 Score=26.84 Aligned_cols=59 Identities=32% Similarity=0.378 Sum_probs=38.8
Q ss_pred eEEEEcCccCC-CCHHHHHHHHHHHHcCC-eEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhcC--CccEEEEcCCCC
Q psy11147 89 RIVYVDGAYDL-FHPGHLDFLEKAKQAGD-YLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACK--YVDEVVIGAPYT 164 (279)
Q Consensus 89 ~iV~v~G~FDl-fH~GHi~~L~~A~~~gd-~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~k--~VD~Vvi~~p~~ 164 (279)
+++ ..+.+++ +|.|=.++++.|++.|- .|++= | ++.+|....+..|+ +++.+.+.+|-+
T Consensus 89 plv-~m~Y~Npi~~~G~e~f~~~~~~aGvdgviip---D-------------lp~ee~~~~~~~~~~~gl~~i~lv~P~T 151 (256)
T TIGR00262 89 PIG-LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVA---D-------------LPLEESGDLVEAAKKHGVKPIFLVAPNA 151 (256)
T ss_pred CEE-EEEeccHHhhhhHHHHHHHHHHcCCCEEEEC---C-------------CChHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 444 8899998 77799999999999873 44432 2 23355555555553 677776665643
No 95
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=28.30 E-value=2.8e+02 Score=31.46 Aligned_cols=78 Identities=17% Similarity=0.100 Sum_probs=50.2
Q ss_pred CCCeEEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCC-CCCCCCHHHHHHHHHhcCCccEEEEcC--C
Q psy11147 86 PTDRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGY-GYPIMNLHERVLSVLACKYVDEVVIGA--P 162 (279)
Q Consensus 86 ~~~~iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~-~~pi~s~~ER~~~v~~~k~VD~Vvi~~--p 162 (279)
.+..++-..|.--.||.|...+......-.+-.++-+.+|.+. ..-|. +.-.++.++=...++++ +|+.|++.+ |
T Consensus 512 ~~~hv~aniGDgTffHSG~~alr~AV~~~~nit~kIL~N~avA-MTGgQp~~G~~~v~~i~~~~~a~-GV~~v~vv~d~p 589 (1186)
T PRK13029 512 RRRHVFQNLGDGTYFHSGLLAIRQAIAAGVNITYKILYNDAVA-MTGGQPVDGVLTVPQIARQVHAE-GVRRIVVVTDEP 589 (1186)
T ss_pred CCCCEEEEeccccchhcCHHHHHHHHhcCCCEEEEEEeCcchh-ccCCCCCCCcCCHHHHHHHHHhC-CccEEEEeCCCc
Confidence 3457888899999999999996665555445445555555443 32222 11246766666678888 899998754 6
Q ss_pred CCC
Q psy11147 163 YTI 165 (279)
Q Consensus 163 ~~~ 165 (279)
+..
T Consensus 590 ~~~ 592 (1186)
T PRK13029 590 GKY 592 (1186)
T ss_pred ccc
Confidence 443
No 96
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=26.73 E-value=2.6e+02 Score=25.31 Aligned_cols=33 Identities=30% Similarity=0.288 Sum_probs=17.5
Q ss_pred CeEEEEcCccCCCCHHHHHHHHHHHHcC-C-eEEEEEc
Q psy11147 88 DRIVYVDGAYDLFHPGHLDFLEKAKQAG-D-YLIVGIH 123 (279)
Q Consensus 88 ~~iV~v~G~FDlfH~GHi~~L~~A~~~g-d-~LIVgv~ 123 (279)
.++||..|+=. . +..++++++++.. + .|+||..
T Consensus 149 ~~ivyLe~SG~--~-~~~e~I~~v~~~~~~~pl~vGGG 183 (219)
T cd02812 149 MPIVYLEYSGA--Y-GPPEVVRAVKKVLGDTPLIVGGG 183 (219)
T ss_pred CeEEEeCCCCC--c-CCHHHHHHHHHhcCCCCEEEeCC
Confidence 56666663222 2 5666666666543 3 4555544
No 97
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=26.50 E-value=2.6e+02 Score=31.59 Aligned_cols=77 Identities=16% Similarity=0.095 Sum_probs=47.6
Q ss_pred CCCeEEEEcCccCCCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCC-CCCHHHHHHHHHhcCCccEEEEc--CC
Q psy11147 86 PTDRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYP-IMNLHERVLSVLACKYVDEVVIG--AP 162 (279)
Q Consensus 86 ~~~~iV~v~G~FDlfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~p-i~s~~ER~~~v~~~k~VD~Vvi~--~p 162 (279)
.+..++-..|..-.||.|...++.....-.+-+++-+.+|.+. ..-|...| .++..+=...++++ +|..|++. +|
T Consensus 498 ~~~hv~a~iGDgTffHSG~~al~~AV~~~~nit~~IL~N~~vA-MTGgQ~~~g~~~~~~i~~~~~a~-GV~~v~vv~ddp 575 (1165)
T PRK09193 498 DEKHVFQNLGDGTYFHSGLLAIRAAVAAGVNITYKILYNDAVA-MTGGQPVDGGLSVPQITRQLAAE-GVKRIVVVTDEP 575 (1165)
T ss_pred CCCcEEEEeccccchhcCHHHHHHHHhcCCCeEEEEEeCCccc-ccCCCCCCCCcchhhHHHHHHhC-CCCEEEEeCCCh
Confidence 3457788999999999999997666655555445555555443 32222111 23433334556777 89998875 56
Q ss_pred CC
Q psy11147 163 YT 164 (279)
Q Consensus 163 ~~ 164 (279)
+.
T Consensus 576 ~~ 577 (1165)
T PRK09193 576 EK 577 (1165)
T ss_pred hh
Confidence 54
No 98
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=25.61 E-value=1.7e+02 Score=28.53 Aligned_cols=70 Identities=23% Similarity=0.318 Sum_probs=50.3
Q ss_pred CccCCCCHHHHHHHHHHHHcCCe--EEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhcCCccEEEEcCCCCChHHHHHh
Q psy11147 95 GAYDLFHPGHLDFLEKAKQAGDY--LIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACKYVDEVVIGAPYTITADMLSQ 172 (279)
Q Consensus 95 G~FDlfH~GHi~~L~~A~~~gd~--LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~k~VD~Vvi~~p~~~~~e~i~~ 172 (279)
=.|-.|| +.+.+++++.|-. +|-=|.+- +..++. .|+..+..+ ||.++..-||+ .+|.++
T Consensus 89 ID~pgFN---lrlak~lk~~~~~~~viyYI~Pq--vWAWr~---------~R~~~i~~~--~D~ll~ifPFE--~~~y~~ 150 (373)
T PF02684_consen 89 IDYPGFN---LRLAKKLKKRGIPIKVIYYISPQ--VWAWRP---------GRAKKIKKY--VDHLLVIFPFE--PEFYKK 150 (373)
T ss_pred eCCCCcc---HHHHHHHHHhCCCceEEEEECCc--eeeeCc---------cHHHHHHHH--HhheeECCccc--HHHHhc
Confidence 3455554 5777888888865 66666643 444442 377777765 99998777887 578999
Q ss_pred cCCcEEEEcC
Q psy11147 173 LRVDIVCRGL 182 (279)
Q Consensus 173 ~~id~vV~G~ 182 (279)
+++++..+|.
T Consensus 151 ~g~~~~~VGH 160 (373)
T PF02684_consen 151 HGVPVTYVGH 160 (373)
T ss_pred cCCCeEEECC
Confidence 9999999997
No 99
>PRK15452 putative protease; Provisional
Probab=24.64 E-value=7.1e+02 Score=24.85 Aligned_cols=119 Identities=14% Similarity=0.133 Sum_probs=60.4
Q ss_pred CCeEEEEcCc-c------CCCCHHH-HHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhcCCccEEE
Q psy11147 87 TDRIVYVDGA-Y------DLFHPGH-LDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACKYVDEVV 158 (279)
Q Consensus 87 ~~~iV~v~G~-F------DlfH~GH-i~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~k~VD~Vv 158 (279)
|...||+.|. | ..|..-- .+.++.|.+.|..+.|.++.=.. . .-+-.+.+-+..+..+ +||.|+
T Consensus 23 GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~--e-----~el~~~~~~l~~l~~~-gvDgvI 94 (443)
T PRK15452 23 GADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPH--N-----AKLKTFIRDLEPVIAM-KPDALI 94 (443)
T ss_pred CCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCC--H-----HHHHHHHHHHHHHHhC-CCCEEE
Confidence 4457888664 2 2233322 23444556667678888763210 0 0011111223334445 799999
Q ss_pred EcCCCCChHHHHHhcCCcEEEEcCCCCCCCCCCCChhHH--HHhCCeEEEeCCCCCCCHHHHHH
Q psy11147 159 IGAPYTITADMLSQLRVDIVCRGLAAVLPDETGRDPYSE--AKKLGKFKLIDSGNTTTTEKIVD 220 (279)
Q Consensus 159 i~~p~~~~~e~i~~~~id~vV~G~d~~~~~~~~~d~~~~--~k~~G~~~~i~~~~~ISSt~I~~ 220 (279)
+.++ .. ..++++..|+.-++++.+..- .+.+.+ .+..|.-.++-+ ..+|-.+|.+
T Consensus 95 V~d~-G~-l~~~ke~~p~l~ih~stqlni----~N~~a~~f~~~lG~~rvvLS-rELsl~EI~~ 151 (443)
T PRK15452 95 MSDP-GL-IMMVREHFPEMPIHLSVQANA----VNWATVKFWQQMGLTRVILS-RELSLEEIEE 151 (443)
T ss_pred EcCH-HH-HHHHHHhCCCCeEEEEecccC----CCHHHHHHHHHCCCcEEEEC-CcCCHHHHHH
Confidence 9865 22 356777778888888765432 222222 233443222211 3567777764
No 100
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=23.77 E-value=3.6e+02 Score=25.85 Aligned_cols=27 Identities=22% Similarity=0.576 Sum_probs=18.6
Q ss_pred cCCCCHHHHHHHHHHHH----cCCeEEEEEc
Q psy11147 97 YDLFHPGHLDFLEKAKQ----AGDYLIVGIH 123 (279)
Q Consensus 97 FDlfH~GHi~~L~~A~~----~gd~LIVgv~ 123 (279)
||+.|+.|+.+++.+.. .|-.++|...
T Consensus 5 iDi~~p~hvhfFk~~I~eL~~~GheV~it~R 35 (335)
T PF04007_consen 5 IDITHPAHVHFFKNIIRELEKRGHEVLITAR 35 (335)
T ss_pred EECCCchHHHHHHHHHHHHHhCCCEEEEEEe
Confidence 68999999999986653 3434554443
No 101
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=23.48 E-value=1.2e+02 Score=27.30 Aligned_cols=51 Identities=29% Similarity=0.337 Sum_probs=31.3
Q ss_pred cCCCCHHHH-HHHHHHHH-cCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhcCCccEEEEcCCC
Q psy11147 97 YDLFHPGHL-DFLEKAKQ-AGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACKYVDEVVIGAPY 163 (279)
Q Consensus 97 FDlfH~GHi-~~L~~A~~-~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~k~VD~Vvi~~p~ 163 (279)
-|++|+|-- .-+..|++ +++.++||++.+. . |-++-.+++ ++|+|.++.=|
T Consensus 82 AdGVHlGq~D~~~~~ar~~~~~~~iIG~S~h~--------------~-eea~~A~~~-g~DYv~~Gpif 134 (211)
T COG0352 82 ADGVHLGQDDMPLAEARELLGPGLIIGLSTHD--------------L-EEALEAEEL-GADYVGLGPIF 134 (211)
T ss_pred CCEEEcCCcccchHHHHHhcCCCCEEEeecCC--------------H-HHHHHHHhc-CCCEEEECCcC
Confidence 367899987 34455555 5568899998652 1 122223333 49999987433
No 102
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=22.92 E-value=4.5e+02 Score=21.90 Aligned_cols=72 Identities=13% Similarity=0.148 Sum_probs=43.2
Q ss_pred CCCHHHHHHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhcCCccEEEEcC-C----CC------ChH
Q psy11147 99 LFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACKYVDEVVIGA-P----YT------ITA 167 (279)
Q Consensus 99 lfH~GHi~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~k~VD~Vvi~~-p----~~------~~~ 167 (279)
-++.--.+++..|++++..+.+.+..+.. .++ ...+.++ ++|+|+... + |. .-.
T Consensus 12 ~l~~~s~el~~~A~~l~~~v~~v~~G~~~-------------~~~-~~~~~~~-Gad~v~~~~~~~~~~~~~~~~a~al~ 76 (168)
T cd01715 12 ELRELTLEAVTAARKLGGEVTALVIGSGA-------------EAV-AAALKAY-GADKVLVAEDPALAHYLAEPYAPALV 76 (168)
T ss_pred ChHHHHHHHHHHHHHhCCCEEEEEECCCh-------------HHH-HHHHHhc-CCCEEEEecChhhcccChHHHHHHHH
Confidence 36667788999999997555444432210 011 2223344 899998632 1 21 112
Q ss_pred HHHHhcCCcEEEEcCCCC
Q psy11147 168 DMLSQLRVDIVCRGLAAV 185 (279)
Q Consensus 168 e~i~~~~id~vV~G~d~~ 185 (279)
+++++.++++|+.|....
T Consensus 77 ~~i~~~~p~~Vl~~~t~~ 94 (168)
T cd01715 77 ALAKKEKPSHILAGATSF 94 (168)
T ss_pred HHHHhcCCCEEEECCCcc
Confidence 355778999999999864
No 103
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=22.41 E-value=83 Score=29.40 Aligned_cols=60 Identities=25% Similarity=0.304 Sum_probs=39.4
Q ss_pred cCccCCCC------------HHHHHHHH----HHHHcC-CeEEEEEcCChhhhhccCCCCCCCCHHHHHHHHHhcCCcc
Q psy11147 94 DGAYDLFH------------PGHLDFLE----KAKQAG-DYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACKYVD 155 (279)
Q Consensus 94 ~G~FDlfH------------~GHi~~L~----~A~~~g-d~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~v~~~k~VD 155 (279)
+=.||+-| -|.-+++. .|.+.| |.|++-+|+|+.-...-|. -.+++++=..++..++.++
T Consensus 185 PVi~DpSHsvq~pg~~~~~s~G~r~~v~~la~AAvA~GadGl~iEvHpdP~~AlsDg~--q~l~~~~~~~ll~~l~~i~ 261 (264)
T PRK05198 185 PVIFDATHSVQLPGGQGGSSGGQREFVPVLARAAVAVGVAGLFIETHPDPDNALSDGP--NMLPLDKLEPLLEQLKAID 261 (264)
T ss_pred CEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHcCCCEEEEEeCCCccccCCCcc--ccCCHHHHHHHHHHHHHHH
Confidence 34478888 58777765 333454 6999999999975555553 3566666666666664443
No 104
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=21.79 E-value=1.9e+02 Score=25.96 Aligned_cols=49 Identities=24% Similarity=0.439 Sum_probs=26.9
Q ss_pred HHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHHHHHHH--HHhcCCccEEEEcCC
Q psy11147 106 DFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLS--VLACKYVDEVVIGAP 162 (279)
Q Consensus 106 ~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~ER~~~--v~~~k~VD~Vvi~~p 162 (279)
+.+++|++.+|.+||.+|.-.. +.. .| +..+|... +.. .++|-|+=.-|
T Consensus 175 ~~i~~~r~~~D~vIv~~HwG~e---~~~--~p--~~~q~~~a~~lid-aGaDiIiG~Hp 225 (250)
T PF09587_consen 175 EDIREARKKADVVIVSLHWGIE---YEN--YP--TPEQRELARALID-AGADIIIGHHP 225 (250)
T ss_pred HHHHHHhcCCCEEEEEeccCCC---CCC--CC--CHHHHHHHHHHHH-cCCCEEEeCCC
Confidence 3445666668899999997532 221 34 44444322 222 36776664433
No 105
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=21.63 E-value=7.3e+02 Score=23.91 Aligned_cols=116 Identities=18% Similarity=0.161 Sum_probs=66.6
Q ss_pred CeEEEEcCc-cCCCCHH----HH---HHHHHHHHcCCeEEEEEcCChhhhhccCCCCCCCCHH---HHHHH-HHhcCCcc
Q psy11147 88 DRIVYVDGA-YDLFHPG----HL---DFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLH---ERVLS-VLACKYVD 155 (279)
Q Consensus 88 ~~iV~v~G~-FDlfH~G----Hi---~~L~~A~~~gd~LIVgv~~D~~v~~~Kg~~~pi~s~~---ER~~~-v~~~k~VD 155 (279)
...||+.+. |-+=+.. +. +.++.|.+.|.+++|.++.-. ..... ++.+- +.+. +||
T Consensus 27 ADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~-----------~~~~~~~~~~~l~~l~e~-GvD 94 (347)
T COG0826 27 ADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLL-----------HNDELETLERYLDRLVEL-GVD 94 (347)
T ss_pred CCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEecccc-----------ccchhhHHHHHHHHHHHc-CCC
Confidence 356888877 5443333 22 344455567777888888642 11112 23222 3334 899
Q ss_pred EEEEcCCCCChHHHHHhcCCcEEEEcCCCCCCCCCCCChhH--HHHhCCeEEEeCCCCCCCHHHHHHHH
Q psy11147 156 EVVIGAPYTITADMLSQLRVDIVCRGLAAVLPDETGRDPYS--EAKKLGKFKLIDSGNTTTTEKIVDRI 222 (279)
Q Consensus 156 ~Vvi~~p~~~~~e~i~~~~id~vV~G~d~~~~~~~~~d~~~--~~k~~G~~~~i~~~~~ISSt~I~~rI 222 (279)
.|++.+|.- ..++.+..|+.=+|.+.+.+- .+... .-+..|--..|. ..-+|-.+|++-+
T Consensus 95 aviv~Dpg~--i~l~~e~~p~l~ih~S~q~~v----~N~~~~~f~~~~G~~rvVl-~rEls~~ei~~i~ 156 (347)
T COG0826 95 AVIVADPGL--IMLARERGPDLPIHVSTQANV----TNAETAKFWKELGAKRVVL-PRELSLEEIKEIK 156 (347)
T ss_pred EEEEcCHHH--HHHHHHhCCCCcEEEeeeEec----CCHHHHHHHHHcCCEEEEe-CccCCHHHHHHHH
Confidence 999997742 457777788877777765442 23322 234466333332 2578888887644
No 106
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=21.06 E-value=3e+02 Score=25.99 Aligned_cols=59 Identities=19% Similarity=0.092 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCC-eEEEEEcCCh-hhhhccCCCCCCCCHHHHHHHHHhc--CCccEEEEcCC
Q psy11147 102 PGHLDFLEKAKQAGD-YLIVGIHPDH-VVAWYKGYGYPIMNLHERVLSVLAC--KYVDEVVIGAP 162 (279)
Q Consensus 102 ~GHi~~L~~A~~~gd-~LIVgv~~D~-~v~~~Kg~~~pi~s~~ER~~~v~~~--k~VD~Vvi~~p 162 (279)
..|+++|.+++..+. .+-|.|+++. .+.+.-- +---+.++|++.+..+ .++.-.+..+|
T Consensus 129 ~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~E--P~apsp~~Ri~al~~l~eaGi~~~v~v~P 191 (297)
T COG1533 129 LRDLDLLLELAERGKVRVAVSITTLDEELAKILE--PRAPSPEERLEALKELSEAGIPVGLFVAP 191 (297)
T ss_pred hhhHHHHHhhhhccceEEEEEeecCcHHHHHhcC--CCCcCHHHHHHHHHHHHHCCCeEEEEEec
Confidence 347888888877764 4566666643 2222111 1234689999999887 57877665445
Done!