RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11147
(279 letters)
>gnl|CDD|140329 PTZ00308, PTZ00308, ethanolamine-phosphate cytidylyltransferase;
Provisional.
Length = 353
Score = 270 bits (693), Expect = 5e-90
Identities = 117/226 (51%), Positives = 152/226 (67%), Gaps = 2/226 (0%)
Query: 21 EVQRTAGVSTTDLVGRMLSMTSQHNASDVARPYERKARSPYTTCSSQFLLTTEKIRQFSE 80
V+RT G+STTDLVGRML T H V + PYT +S L T+ KI QFS
Sbjct: 126 VVKRTEGISTTDLVGRMLLCTKSHLLKSVDEVQLESSLFPYTP-TSHCLTTSRKIVQFSN 184
Query: 81 GRQPKPTDRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMN 140
R PKP DRIVYVDG++DLFH GH+ L+KA++ GDYLIVG+H D VV KG YPIMN
Sbjct: 185 NRSPKPGDRIVYVDGSFDLFHIGHIRVLQKARELGDYLIVGVHEDQVVNEQKGSNYPIMN 244
Query: 141 LHERVLSVLACKYVDEVVIGAPYTITADMLSQLRVDIVCRG-LAAVLPDETGRDPYSEAK 199
L+ERVL VL+C+YVDEVVIGAP+ +T +++ L +++V G + ++ +E G DPY K
Sbjct: 245 LNERVLGVLSCRYVDEVVIGAPFDVTKEVIDSLHINVVVGGKFSDLVNEEGGSDPYEVPK 304
Query: 200 KLGKFKLIDSGNTTTTEKIVDRIVFHRLEFERRNFEKENKEMKLIE 245
+G FK +DSG TT+ IVDR+V +RL F +R +K KE+K E
Sbjct: 305 AMGIFKEVDSGCDLTTDSIVDRVVKNRLAFLKRQAKKRAKEIKSQE 350
Score = 112 bits (281), Expect = 8e-29
Identities = 54/139 (38%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 85 KPTDRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHER 144
KP V+VDG +D+ H GH + L +A+ GD L VG H D + K G P+M+ ER
Sbjct: 8 KPGTIRVWVDGCFDMLHFGHANALRQARALGDELFVGCHSDEEIMRNK--GPPVMHQEER 65
Query: 145 VLSVLACKYVDEVVIGAPYTITADMLSQLRVDIVCRGLAAVLPDETGRDPYSEAKKLGKF 204
++ ACK+VDEVV G PYT + L +L D V G + D GR+ Y E GKF
Sbjct: 66 YEALRACKWVDEVVEGYPYTTRLEDLERLECDFVVHG-DDISVDLNGRNSYQEIIDAGKF 124
Query: 205 KLIDSGNTTTTEKIVDRIV 223
K++ +T +V R++
Sbjct: 125 KVVKRTEGISTTDLVGRML 143
>gnl|CDD|173924 cd02173, ECT, CTP:phosphoethanolamine cytidylyltransferase (ECT).
CTP:phosphoethanolamine cytidylyltransferase (ECT)
catalyzes the conversion of phosphoethanolamine to
CDP-ethanolamine as part of the CDP-ethanolamine
biosynthesis pathway. ECT expression in hepatocytes is
localized predominantly to areas of the cytoplasm that
are rich in rough endoplasmic reticulum. Several ECTs,
including yeast and human ECT, have large repetitive
sequences located within their N- and C-termini.
Length = 152
Score = 235 bits (601), Expect = 6e-79
Identities = 90/151 (59%), Positives = 114/151 (75%), Gaps = 1/151 (0%)
Query: 88 DRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLS 147
D++VYVDGA+DLFH GH++FLEKA++ GDYLIVG+H D V YKG YPIMNLHERVLS
Sbjct: 2 DKVVYVDGAFDLFHIGHIEFLEKARELGDYLIVGVHDDQTVNEYKGSNYPIMNLHERVLS 61
Query: 148 VLACKYVDEVVIGAPYTITADMLSQLRVDIVCRGLAAVLPD-ETGRDPYSEAKKLGKFKL 206
VLAC+YVDEVVIGAPY IT +++ ++D+V G PD G DPY+ K++G FK
Sbjct: 62 VLACRYVDEVVIGAPYVITKELIEHFKIDVVVHGKTEETPDSLDGEDPYAVPKEMGIFKE 121
Query: 207 IDSGNTTTTEKIVDRIVFHRLEFERRNFEKE 237
IDSG+ TT IV+RI+ +RL +E RN +KE
Sbjct: 122 IDSGSDLTTRDIVNRIIKNRLAYEARNKKKE 152
>gnl|CDD|215227 PLN02406, PLN02406, ethanolamine-phosphate cytidylyltransferase.
Length = 418
Score = 205 bits (523), Expect = 7e-64
Identities = 100/239 (41%), Positives = 144/239 (60%), Gaps = 14/239 (5%)
Query: 18 RTMEVQRTAGVSTTDLVGRMLSMTSQ------HNASDVARPYERKARSPYTTCS------ 65
R +++RT GVS+TD+VGRML + HN S + R + S
Sbjct: 169 RYKQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHSQFEDGGSGSGTRV 228
Query: 66 SQFLLTTEKIRQFSEGRQPKPTDRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPD 125
S FL T+ +I QFS G+ P P RIVY+DGA+DLFH GH++ L A+ GD+L+VGIH D
Sbjct: 229 SHFLPTSRRIVQFSNGKGPGPDARIVYIDGAFDLFHAGHVEILRLARALGDFLLVGIHTD 288
Query: 126 HVVAWYKGYGYPIMNLHERVLSVLACKYVDEVVIGAPYTITADMLSQLRVDIVCRGLAAV 185
V+ ++G PIMNLHER LSVLAC+YVDEV+IGAP+ ++ DM++ + +V G A
Sbjct: 289 QTVSAHRGAHRPIMNLHERSLSVLACRYVDEVIIGAPWEVSKDMITTFNISLVVHGTVAE 348
Query: 186 LPD--ETGRDPYSEAKKLGKFKLIDSGNTTTTEKIVDRIVFHRLEFERRNFEKENKEMK 242
D + DPY+ K +G F++++S TT I+ RIV + +++RN +K E +
Sbjct: 349 NNDFLKGEDDPYAVPKSMGIFQVLESPLDITTSTIIRRIVANHEAYQKRNEKKAESEKR 407
Score = 95.1 bits (236), Expect = 3e-22
Identities = 52/149 (34%), Positives = 84/149 (56%), Gaps = 10/149 (6%)
Query: 82 RQPKPTDRI-VYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMN 140
++ K + VY+DG +D+ H GH + L +A+ GD L+VG+ D + KG P+
Sbjct: 46 KKKKKKKPVRVYMDGCFDMMHYGHANALRQARALGDELVVGVVSDEEIIANKGP--PVTP 103
Query: 141 LHERVLSVLACKYVDEVVIGAPYTITADMLSQL----RVDIVCRG-LAAVLPDETGRDPY 195
+HER++ V K+VDEV+ APY IT + +++L +D + G +LPD G D Y
Sbjct: 104 MHERMIMVSGVKWVDEVIPDAPYAITEEFMNKLFNEYNIDYIIHGDDPCLLPD--GTDAY 161
Query: 196 SEAKKLGKFKLIDSGNTTTTEKIVDRIVF 224
+ AKK G++K I ++ IV R++
Sbjct: 162 ALAKKAGRYKQIKRTEGVSSTDIVGRMLL 190
>gnl|CDD|173925 cd02174, CCT, CTP:phosphocholine cytidylyltransferase.
CTP:phosphocholine cytidylyltransferase (CCT) catalyzes
the condensation of CTP and phosphocholine to form
CDP-choline as the rate-limiting and regulatory step in
the CDP-choline pathway. CCT is unique in that its
enzymatic activity is regulated by the extent of its
association with membrane structures. A current model
posts that the elastic stress of the bilayer curvature
is sensed by CCT and this governs the degree of membrane
association, thus providing a mechanism for both
positive and negative regulation of activity.
Length = 150
Score = 128 bits (324), Expect = 4e-37
Identities = 58/135 (42%), Positives = 78/135 (57%), Gaps = 5/135 (3%)
Query: 91 VYVDGAYDLFHPGHLDFLEKAKQAG--DYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSV 148
VYVDG +DLFH GH + L +AK+ G DYLIVG+H D + +KG P+M ER +V
Sbjct: 5 VYVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKGP--PVMTEEERYEAV 62
Query: 149 LACKYVDEVVIGAPYTITADMLSQLRVDIVCRGLAAVLPDETGRDPYSEAKKLGKFKLID 208
CK+VDEVV GAPY T + L + + D V G + D G D Y E K G+FK +
Sbjct: 63 RHCKWVDEVVEGAPYVTTPEFLDKYKCDYVAHG-DDIYLDADGEDCYQEVKDAGRFKEVK 121
Query: 209 SGNTTTTEKIVDRIV 223
+T ++ RI+
Sbjct: 122 RTEGVSTTDLIGRIL 136
Score = 47.2 bits (113), Expect = 1e-06
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 21 EVQRTAGVSTTDLVGRMLSMTSQHNASDVARP 52
EV+RT GVSTTDL+GR+L ++ ++ R
Sbjct: 119 EVKRTEGVSTTDLIGRILLDYRDYHRRNLQRG 150
>gnl|CDD|223688 COG0615, TagD, Cytidylyltransferase [Cell envelope biogenesis,
outer membrane / Lipid metabolism].
Length = 140
Score = 104 bits (261), Expect = 7e-28
Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 14/142 (9%)
Query: 91 VYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLA 150
V+ DG +D+ HPGH++FL +AK+ GD LIV + D V K PIM +R + +
Sbjct: 4 VWADGTFDILHPGHIEFLRQAKKLGDELIVVVARDETVIKRKK-RKPIMPEEQRAEVLES 62
Query: 151 CKYVDEVVIGAPYTITADMLSQLRVDIVCRGLAAVLPDETGRDPY--SEAKKLGKF---- 204
+YVDEV++GAP+ I + + + + DIV G D+ + E K G F
Sbjct: 63 LRYVDEVILGAPWDIKFEDIEEYKPDIVVLG-----DDQKFDEDDLKYELVKRGLFVEVK 117
Query: 205 --KLIDSGNTTTTEKIVDRIVF 224
+ + + +T I+ RI+
Sbjct: 118 RTEGVSTCELISTSDIIKRILE 139
>gnl|CDD|173921 cd02170, cytidylyltransferase, cytidylyltransferase. The
cytidylyltransferase family includes cholinephosphate
cytidylyltransferase (CCT), glycerol-3-phosphate
cytidylyltransferase, RafE and phosphoethanolamine
cytidylyltransferase (ECT). All enzymes catalyze the
transfer of a cytidylyl group from CTP to various
substrates.
Length = 136
Score = 100 bits (250), Expect = 2e-26
Identities = 52/138 (37%), Positives = 73/138 (52%), Gaps = 14/138 (10%)
Query: 91 VYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLA 150
VY G +D+ HPGH+ FLE+AK+ GDYLIVG+ D VA K PI+ +R V A
Sbjct: 4 VYAAGTFDIIHPGHIRFLEEAKKLGDYLIVGVARDETVA--KIKRRPILPEEQRAEVVEA 61
Query: 151 CKYVDEVVIGAPYTITADMLSQLRVDIVCRGLAAVLPD----ETGRDPYSEAKKLGKFKL 206
KYVDEV++G P++ L +L+ D++ G D + Y E KK GK
Sbjct: 62 LKYVDEVILGHPWSYF-KPLEELKPDVIVLG-----DDQKNGVDEEEVYEELKKRGKVIE 115
Query: 207 IDSGNT--TTTEKIVDRI 222
+ T ++ I+ RI
Sbjct: 116 VPRKKTEGISSSDIIKRI 133
>gnl|CDD|215229 PLN02413, PLN02413, choline-phosphate cytidylyltransferase.
Length = 294
Score = 94.6 bits (235), Expect = 8e-23
Identities = 65/173 (37%), Positives = 87/173 (50%), Gaps = 13/173 (7%)
Query: 72 TEKIRQFSEGRQPKPTDRI--VYVDGAYDLFHPGHLDFLEKAKQA--GDYLIVGIHPDHV 127
T S P+DR VY DG YDLFH GH LE+AK+ YL+VG D +
Sbjct: 9 TAAASSGSATPSSSPSDRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDEL 68
Query: 128 VAWYKGYGYPIMNLHERVLSVLACKYVDEVVIGAPYTITADMLSQLRVDIVCRGLAAVLP 187
YKG +M ER S+ CK+VDEV+ AP+ IT + L + R+D V LP
Sbjct: 69 THKYKGK--TVMTEDERYESLRHCKWVDEVIPDAPWVITQEFLDKHRIDYVAHD---ALP 123
Query: 188 --DETG--RDPYSEAKKLGKFKLIDSGNTTTTEKIVDRIVFHRLEFERRNFEK 236
D +G +D Y KK+GKFK + +T I+ RIV ++ RN +
Sbjct: 124 YADASGAGKDVYEFVKKIGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLAR 176
Score = 36.1 bits (83), Expect = 0.014
Identities = 14/39 (35%), Positives = 26/39 (66%)
Query: 18 RTMEVQRTAGVSTTDLVGRMLSMTSQHNASDVARPYERK 56
+ E +RT G+ST+D++ R++ +Q+ ++AR Y RK
Sbjct: 143 KFKETKRTDGISTSDIIMRIVKDYNQYVMRNLARGYSRK 181
>gnl|CDD|232837 TIGR00125, cyt_tran_rel, cytidyltransferase-like domain. Protein
families that contain at least one copy of this domain
include citrate lyase ligase, pantoate-beta-alanine
ligase, glycerol-3-phosphate cytidyltransferase,
ADP-heptose synthase, phosphocholine
cytidylyltransferase, lipopolysaccharide core
biosynthesis protein KdtB, the bifunctional protein
NadR, and a number whose function is unknown. Many of
these proteins are known to use CTP or ATP and release
pyrophosphate.
Length = 66
Score = 80.4 bits (199), Expect = 8e-20
Identities = 33/68 (48%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 90 IVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVL 149
IV G +D FH GHLD LE+AK+ D LIVG+ D V K G P+ +L ER+ +
Sbjct: 1 IVIFVGTFDPFHLGHLDLLERAKELFDELIVGVGSDQFVNPLK--GEPVFSLEERLEMLK 58
Query: 150 ACKYVDEV 157
A KYVDE
Sbjct: 59 ALKYVDEN 66
>gnl|CDD|225425 COG2870, RfaE, ADP-heptose synthase, bifunctional sugar
kinase/adenylyltransferase [Cell envelope biogenesis,
outer membrane].
Length = 467
Score = 74.3 bits (183), Expect = 5e-15
Identities = 42/139 (30%), Positives = 72/139 (51%), Gaps = 11/139 (7%)
Query: 88 DRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHER--V 145
++V+ +G +D+ H GH+ +L +A+ GD LIVG++ D V KG PI + +R V
Sbjct: 332 KKVVFTNGCFDILHAGHVTYLAQARALGDRLIVGVNSDASVKRLKGESRPINSEEDRAAV 391
Query: 146 LSVLACKYVDEVVIGAPYTITADMLSQLRVDIVCRGLAAVLPDE-TGRDPYSEAKKL-GK 203
L+ L VD VVI T +++ ++ DI+ +G ++ G D + G+
Sbjct: 392 LAALES--VDLVVIFDEDT-PEELIEAVKPDILVKG-GDYKIEKIVGAD---IVEAYGGE 444
Query: 204 FKLIDSGNTTTTEKIVDRI 222
LI +T KI+++I
Sbjct: 445 VLLIPFEEGKSTTKIIEKI 463
>gnl|CDD|173923 cd02172, RfaE_N, N-terminal domain of RfaE. RfaE is a protein
involved in the biosynthesis of
ADP-L-glycero-D-manno-heptose, a precursor for LPS inner
core biosynthesis. RfaE is a bifunctional protein in
Escherichia coli, and separate proteins in other
organisms. Domain I is suggested to act in
D-glycero-D-manno-heptose 1-phosphate biosynthesis,
while domain II (this family) adds ADP to yield
ADP-D-glycero-D-manno-heptose .
Length = 144
Score = 69.0 bits (169), Expect = 1e-14
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 89 RIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSV 148
+V G +DL HPGH+ L+ A+ GD L+V + D V KG G PI R +
Sbjct: 5 TVVLCHGVFDLLHPGHVRHLQAARSLGDILVVSLTSDRYVN--KGPGRPIFPEDLRAEVL 62
Query: 149 LACKYVDEVVIGAPYTITADMLSQLRVDIVCRGLAAVLPDE 189
A +VD VV+ +++ L+ +I +G P+
Sbjct: 63 AALGFVDYVVL-FDNPTALEIIDALQPNIYVKGGDYENPEN 102
>gnl|CDD|131254 TIGR02199, rfaE_dom_II, rfaE bifunctional protein, domain II. RfaE
is a protein involved in the biosynthesis of
ADP-L-glycero-D-manno-heptose, a precursor for LPS inner
core biosynthesis. RfaE is a bifunctional protein in E.
coli, and separate proteins in some other genome. Domain
I (TIGR02198) is suggested to act in
D-glycero-D-manno-heptose 1-phosphate biosynthesis,
while domain II (this family) adds ADP to yield
ADP-D-glycero-D-manno-heptose [Cell envelope,
Biosynthesis and degradation of surface polysaccharides
and lipopolysaccharides].
Length = 144
Score = 68.1 bits (167), Expect = 3e-14
Identities = 34/95 (35%), Positives = 57/95 (60%), Gaps = 5/95 (5%)
Query: 89 RIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHER--VL 146
+IV+ +G +D+ H GH+ +L++A+ GD L+VG++ D V KG PI +R VL
Sbjct: 12 KIVFTNGCFDILHAGHVSYLQQARALGDRLVVGVNSDASVKRLKGETRPINPEEDRAEVL 71
Query: 147 SVLACKYVDEVVIGAPYTITADMLSQLRVDIVCRG 181
+ L+ VD VVI T +++ +L+ DI+ +G
Sbjct: 72 AALSS--VDYVVIFDEDTPE-ELIGELKPDILVKG 103
>gnl|CDD|183085 PRK11316, PRK11316, bifunctional heptose 7-phosphate kinase/heptose
1-phosphate adenyltransferase; Provisional.
Length = 473
Score = 62.2 bits (152), Expect = 6e-11
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 89 RIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHER--VL 146
+IV +G +D+ H GH+ +L A++ GD LIV ++ D V KG G P+ L +R VL
Sbjct: 341 KIVMTNGCFDILHAGHVSYLANARKLGDRLIVAVNSDASVKRLKGEGRPVNPLEQRMAVL 400
Query: 147 SVLACKYVDEVV 158
+ L VD VV
Sbjct: 401 AALEA--VDWVV 410
>gnl|CDD|173922 cd02171, G3P_Cytidylyltransferase, glycerol-3-phosphate
cytidylyltransferase. Glycerol-3-phosphate
cytidylyltransferase,(CDP-glycerol pyrophosphorylase).
Glycerol-3-phosphate cytidyltransferase acts in pathways
of teichoic acid biosynthesis. Teichoic acids are
substituted polymers, linked by phosphodiester bonds, of
glycerol, ribitol, etc. An example is poly(glycerol
phosphate), the major teichoic acid of the Bacillus
subtilis cell wall. Most, but not all, species encoding
proteins in this family are Gram-positive bacteria. A
closely related protein assigned a different function
experimentally is a human ethanolamine-phosphate
cytidylyltransferase.
Length = 129
Score = 54.8 bits (132), Expect = 1e-09
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 10/74 (13%)
Query: 89 RIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKG----YGYPIMNLHER 144
++V G +DL H GHL+ LE+AK GD LIV + D A KG Y +R
Sbjct: 2 KVVITYGTFDLLHIGHLNLLERAKALGDKLIVAVSTDEFNA-GKGKKAVIPY-----EQR 55
Query: 145 VLSVLACKYVDEVV 158
+ + +YVD V+
Sbjct: 56 AEILESIRYVDLVI 69
>gnl|CDD|216517 pfam01467, CTP_transf_2, Cytidylyltransferase. This family
includes: Cholinephosphate cytidylyltransferase.
Glycerol-3-phosphate cytidylyltransferase.
Length = 148
Score = 53.6 bits (129), Expect = 5e-09
Identities = 28/134 (20%), Positives = 46/134 (34%), Gaps = 24/134 (17%)
Query: 92 YVDGAYDLFHPGHLDFLEKAKQAGDYL-IVGIHPDHVVAWYKGYGYPIMNLHERVLSVLA 150
G +D H GHL LE+AK+ D IVG+ D + + ER+ +
Sbjct: 1 LFGGTFDPIHLGHLRLLEQAKELFDLDKIVGVPSDESP---HKDTKNLFSAEERLEMLEL 57
Query: 151 CKYVDE-------------VVIGAP-------YTITADMLSQLRVDIVCRGLAAVLPDET 190
VD +IGA + ++L + ++ +V R L L
Sbjct: 58 ALEVDPNLEVDDFEDLDVYFIIGADALVNLRGWRGVTELLPEFQIVVVNRPLDYGLETVF 117
Query: 191 GRDPYSEAKKLGKF 204
R+ +
Sbjct: 118 LREELDKYPLGKIV 131
>gnl|CDD|130581 TIGR01518, g3p_cytidyltrns, glycerol-3-phosphate
cytidylyltransferase. This model describes
glycerol-3-phosphate cytidyltransferase, also called
CDP-glycerol pyrophosphorylase. A closely related
protein assigned a different function experimentally is
a human ethanolamine-phosphate cytidylyltransferase (EC
2.7.7.14). Glycerol-3-phosphate cytidyltransferase acts
in pathways of teichoic acid biosynthesis. Teichoic
acids are substituted polymers, linked by phosphodiester
bonds, of glycerol, ribitol, etc. An example is
poly(glycerol phosphate), the major teichoic acid of the
Bacillus subtilis cell wall. Most but not all species
encoding proteins in this family are Gram-positive
bacteria [Cell envelope, Biosynthesis and degradation of
murein sacculus and peptidoglycan].
Length = 125
Score = 52.9 bits (127), Expect = 5e-09
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 91 VYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLA 150
V G +DL H GH++ LE+AKQ GDYLIV + D + Y + R L +
Sbjct: 1 VLTYGTFDLLHWGHINLLERAKQLGDYLIVALSTDEFNLQKQKKAY--HSYEHRKLILET 58
Query: 151 CKYVDEVV 158
+YVD V+
Sbjct: 59 IRYVDLVI 66
>gnl|CDD|234834 PRK00777, PRK00777, phosphopantetheine adenylyltransferase;
Provisional.
Length = 153
Score = 42.9 bits (102), Expect = 3e-05
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 91 VYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLA 150
V V G +D H GH L KA + G + +G+ D YK + + R+ ++
Sbjct: 4 VAVGGTFDPLHDGHRALLRKAFELGKRVTIGLTSDEFAKSYK--KHKVRPYEVRLKNLK- 60
Query: 151 CKYVDEVVIGAPYTIT 166
K++ V Y I
Sbjct: 61 -KFLKAVEYDREYEIV 75
>gnl|CDD|223950 COG1019, COG1019, Predicted nucleotidyltransferase [General
function prediction only].
Length = 158
Score = 36.5 bits (85), Expect = 0.004
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 4/82 (4%)
Query: 89 RIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGY-PIMNLHERVLS 147
V V G +D H GH LE A + GD + +G+ D + K P + +
Sbjct: 6 MKVAVGGTFDRLHDGHKKLLEVAFEIGDRVTIGLTSDELAKKKKKEKIEPYEVRLRNLRN 65
Query: 148 VLACKYVDE---VVIGAPYTIT 166
L D V I PY T
Sbjct: 66 FLESIKADYEEIVPIDDPYGPT 87
>gnl|CDD|184424 PRK13964, coaD, phosphopantetheine adenylyltransferase;
Provisional.
Length = 140
Score = 36.3 bits (84), Expect = 0.006
Identities = 16/33 (48%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Query: 95 GAYDLFHPGHLDFLEKAKQAGD--YLIVGIHPD 125
G++D FH GHL+ L+KA + D Y++V I+PD
Sbjct: 8 GSFDPFHKGHLNILKKALKLFDKVYVVVSINPD 40
>gnl|CDD|224242 COG1323, COG1323, Predicted nucleotidyltransferase [General
function prediction only].
Length = 358
Score = 36.2 bits (84), Expect = 0.012
Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 19/99 (19%)
Query: 97 YDLFHPGHLDFLEKAKQ--AGDYLIVGIHPDHVVAWYKGYGYP-IMNLHERVLSVLACKY 153
Y+ FH GH + KA++ GD +I + D + G P I + ER L
Sbjct: 10 YNPFHNGHQYHINKAREEFKGDEIIAVMSGD-----FTQRGEPAIGHKWERKKMALEGG- 63
Query: 154 VDEVVI--------GAPYTIT--ADMLSQLRVDIVCRGL 182
D V+ GAPY T +L+ L D + G
Sbjct: 64 ADLVIELPLERSGQGAPYFATRAVRILNALGGDDIAFGS 102
>gnl|CDD|185678 cd02039, cytidylyltransferase_like, Cytidylyltransferase-like
domain. Cytidylyltransferase-like domain. Many of these
proteins are known to use CTP or ATP and release
pyrophosphate. Protein families that contain at least
one copy of this domain include citrate lyase ligase,
pantoate-beta-alanine ligase, glycerol-3-phosphate
cytidyltransferase, ADP-heptose synthase, phosphocholine
cytidylyltransferase, lipopolysaccharide core
biosynthesis protein KdtB, the bifunctional protein
NadR, and a number whose function is unknown.
Length = 143
Score = 35.1 bits (81), Expect = 0.013
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 90 IVYVDGAYDLFHPGHLDFLEKAK-QAGDYLIVGI--HPDHVVAWYKGYGYPIMNLHERVL 146
+ + G ++ FH GHL +++A +A D +I+ I +P K +LHERV
Sbjct: 1 VGIIIGRFEPFHLGHLKLIKEALEEALDEVIIIIVSNPPK-----KKRNKDPFSLHERVE 55
Query: 147 SVLAC-KYVDEVVI 159
+ K +VV
Sbjct: 56 MLKEILKDRLKVVP 69
>gnl|CDD|234912 PRK01170, PRK01170, phosphopantetheine adenylyltransferase/unknown
domain fusion protein; Provisional.
Length = 322
Score = 35.6 bits (82), Expect = 0.019
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 90 IVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYP 137
I V G + H GH L+KA + GD +++G+ D V K Y P
Sbjct: 2 ITVVGGTFSKLHKGHKALLKKAIETGDEVVIGLTSDEYVRKNKVYPIP 49
>gnl|CDD|235946 PRK07143, PRK07143, hypothetical protein; Provisional.
Length = 279
Score = 33.4 bits (77), Expect = 0.082
Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 74 KIRQFSEGRQPKPTDRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKG 133
K+ F + ++ +V G ++ FH GHL+ +KAK++ D +++ I + K
Sbjct: 3 KVYTFPL--KNFKFEKPTFVLGGFESFHLGHLELFKKAKESNDEIVIVIFKN-PENLPKN 59
Query: 134 YGYPIMNLHERVLS 147
+L+ R+ +
Sbjct: 60 TNKKFSDLNSRLQT 73
>gnl|CDD|223274 COG0196, RibF, FAD synthase [Coenzyme metabolism].
Length = 304
Score = 31.8 bits (73), Expect = 0.36
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Query: 95 GAYDLFHPGHLDFLEKAKQAGDYLIVGI-------HPDHVVAWYKGYGYPIMNLHERVLS 147
G +D H GH L +A +A + + + HP ++ K + L E++
Sbjct: 22 GNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTR-LTPLREKIRL 80
Query: 148 VLACKYVDEVV 158
+ VD +V
Sbjct: 81 LAGYG-VDALV 90
>gnl|CDD|223741 COG0669, CoaD, Phosphopantetheine adenylyltransferase [Coenzyme
metabolism].
Length = 159
Score = 31.0 bits (71), Expect = 0.37
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 87 TDRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGI--HPDHVVAWYKGYGYPIMNLHER 144
+I G++D GHLD +++A D +IV + +P K P+ +L ER
Sbjct: 1 MMKIAVYPGSFDPITNGHLDIIKRASALFDEVIVAVAINPS------KK---PLFSLEER 51
Query: 145 V-LSVLACKYVDEVVIGAPYTITADMLSQLRVDIVCRGLAAV 185
V L A K++ V + + D +L ++ RGL AV
Sbjct: 52 VELIREATKHLPNVEVVGFSGLLVDYAKKLGATVLVRGLRAV 93
>gnl|CDD|218020 pfam04312, DUF460, Protein of unknown function (DUF460). Archaeal
protein of unknown function.
Length = 138
Score = 30.6 bits (70), Expect = 0.37
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 105 LDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLA 150
++F +K+ YLIVGI P G I++L VL + +
Sbjct: 20 IEFRPLSKRPRRYLIVGIDPGITT------GIAILDLDGEVLDLYS 59
>gnl|CDD|173912 cd02156, nt_trans, nucleotidyl transferase superfamily. nt_trans
(nucleotidyl transferase) This superfamily includes the
class I amino-acyl tRNA synthetases, pantothenate
synthetase (PanC), ATP sulfurylase, and the
cytidylyltransferases, all of which have a conserved
dinucleotide-binding domain.
Length = 105
Score = 30.2 bits (68), Expect = 0.42
Identities = 10/38 (26%), Positives = 14/38 (36%)
Query: 91 VYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVV 128
G H GH + +AK D +V I + V
Sbjct: 2 ARFPGEPGYLHIGHAKLICRAKGIADQCVVRIDDNPPV 39
>gnl|CDD|233444 TIGR01510, coaD_prev_kdtB, pantetheine-phosphate
adenylyltransferase, bacterial. This model describes
pantetheine-phosphate adenylyltransferase, the
penultimate enzyme of coenzyme A (CoA) biosynthesis in
bacteria. It does not show any strong homology to
eukaryotic enzymes of coenzyme A biosynthesis. This
protein was previously designated KdtB and postulated
(because of cytidyltransferase homology and proximity to
kdtA) to be an enzyme of LPS biosynthesis, a
cytidyltransferase for 3-deoxy-D-manno-2-octulosonic
acid. However, no activity toward that compound was
found with either CTP or ATP. The phylogenetic
distribution of this enzyme is more consistent with
coenzyme A biosynthesis than with LPS biosynthesis
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Pantothenate and coenzyme A].
Length = 155
Score = 30.7 bits (70), Expect = 0.46
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 12/94 (12%)
Query: 95 GAYDLFHPGHLDFLEKAKQAGDYLIVGI--HPDHVVAWYKGYGYPIMNLHERV-LSVLAC 151
G++D GHLD +++A D +IV + +P K + +L ERV L A
Sbjct: 6 GSFDPVTNGHLDIIKRAAALFDEVIVAVAKNPS------KKPLF---SLEERVELIKDAT 56
Query: 152 KYVDEVVIGAPYTITADMLSQLRVDIVCRGLAAV 185
K++ V + + D +L + RGL A
Sbjct: 57 KHLPNVRVDVFDGLLVDYAKELGATFIVRGLRAA 90
>gnl|CDD|227824 COG5537, IRR1, Cohesin [Cell division and chromosome partitioning].
Length = 740
Score = 31.0 bits (70), Expect = 0.71
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 186 LPDETGRDPYSEA--KKLGKFKLIDSGNTTTTEK--IVDRIVFHRLEFERRNFEK 236
L DE S KK GK +LID N+ + + IV H ++ E +N ++
Sbjct: 609 LVDEGLYTDESNKIFKKCGK-ELIDIFNSRSKSRMNIVSGYFRHLMDVEEKNVQE 662
>gnl|CDD|165451 PHA03180, PHA03180, helicase-primase primase subunit; Provisional.
Length = 1071
Score = 30.6 bits (69), Expect = 0.97
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 9/61 (14%)
Query: 6 PRPPLIRPWVPTRTMEVQRTAGVSTTDLVGRMLSMTSQHNASDVARPYERKARSPYTTCS 65
P P + ++ + G+ST DL+ R + +TS+ V R + PY C
Sbjct: 577 PSPGTFKA----HLSKLGMSEGLSTDDLIARDMFITSE-----VERSFGNVQELPYIACG 627
Query: 66 S 66
Sbjct: 628 P 628
>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2
domain [General function prediction only].
Length = 1227
Score = 29.7 bits (67), Expect = 2.0
Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Query: 209 SGNTTTTEKIVDRIVFHRLEFERRNFEKENKEMKLIELIESSKTGATGMVGATTYATRHT 268
+ IV H F R+ N K L + +K TG+ +T
Sbjct: 1139 NIPLDGKTFIVLDGTLH-PGFNFRSKYALNVSRKEGILGDIAKKVGTGLKAGSTTVGSVG 1197
Query: 269 LKA 271
+KA
Sbjct: 1198 VKA 1200
>gnl|CDD|206673 cd01886, EF-G, Elongation factor G (EF-G) family involved in both
the elongation and ribosome recycling phases of protein
synthesis. Translocation is mediated by EF-G (also
called translocase). The structure of EF-G closely
resembles that of the complex between EF-Tu and tRNA.
This is an example of molecular mimicry; a protein
domain evolved so that it mimics the shape of a tRNA
molecule. EF-G in the GTP form binds to the ribosome,
primarily through the interaction of its EF-Tu-like
domain with the 50S subunit. The binding of EF-G to the
ribosome in this manner stimulates the GTPase activity
of EF-G. On GTP hydrolysis, EF-G undergoes a
conformational change that forces its arm deeper into
the A site on the 30S subunit. To accommodate this
domain, the peptidyl-tRNA in the A site moves to the P
site, carrying the mRNA and the deacylated tRNA with it.
The ribosome may be prepared for these rearrangements by
the initial binding of EF-G as well. The dissociation of
EF-G leaves the ribosome ready to accept the next
aminoacyl-tRNA into the A site. This group contains both
eukaryotic and bacterial members.
Length = 270
Score = 29.4 bits (67), Expect = 2.0
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 207 IDSGNTTTTEKI 218
ID+G TTTTE+I
Sbjct: 8 IDAGKTTTTERI 19
>gnl|CDD|232818 TIGR00083, ribF, riboflavin kinase/FMN adenylyltransferase.
multifunctional enzyme: riboflavin kinase (EC 2.7.1.26)
(flavokinase) / FMN adenylyltransferase (EC 2.7.7.2)
(FAD pyrophosphorylase) (FAD synthetase) [Biosynthesis
of cofactors, prosthetic groups, and carriers,
Riboflavin, FMN, and FAD].
Length = 288
Score = 29.3 bits (66), Expect = 2.2
Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 13/87 (14%)
Query: 95 GAYDLFHPGHLDFLEKAKQAGDY-------LIVGIHPDHVVAW-YKGYGYPIMNLHERVL 146
G +D H GH L++ KQ + L+ HP W + L ++
Sbjct: 5 GYFDGLHLGHQALLQELKQIAEEKGLPPAVLLFEPHPSEQFNWLTAPA---LTPLEDKAR 61
Query: 147 SVLACKYVDEVVIGAPYTITADMLSQL 173
+ E ++ + LS L
Sbjct: 62 QLQIKGV--EQLLVVVFDEEFANLSAL 86
>gnl|CDD|237185 PRK12739, PRK12739, elongation factor G; Reviewed.
Length = 691
Score = 29.0 bits (66), Expect = 2.8
Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 4/19 (21%)
Query: 207 IDSGNTTTTEKIVDRIVFH 225
ID+G TTTTE RI+++
Sbjct: 17 IDAGKTTTTE----RILYY 31
>gnl|CDD|173915 cd02164, PPAT_CoAS, phosphopantetheine adenylyltransferase domain
of eukaryotic and archaeal bifunctional enzymes. The
PPAT domain of the bifunctional enzyme with PPAT and
DPCK functions. The final two steps of the CoA
biosynthesis pathway are catalyzed by phosphopantetheine
adenylyltransferase (PPAT) and dephospho-CoA (dPCoA)
kinase (DPCK). The PPAT reaction involves the reversible
adenylation of 4'-phosphopantetheine to form 3'-dPCoA
and PPi, and DPCK catalyses phosphorylation of the
3'-hydroxy group of the ribose moiety of dPCoA. In
eukaryotes the two enzymes are part of a large
multienzyme complex . Studies in Corynebacterium
ammoniagenes suggested that separate enzymes were
present, and this was confirmed through identification
of the bacterial PPAT/CoAD.
Length = 143
Score = 28.0 bits (63), Expect = 3.2
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 90 IVYVDGAYDLFHPGHLDFLEKA-KQAGDYLIVGI 122
V V G +D H GH L A AG+ LI+G+
Sbjct: 1 KVAVGGTFDRLHDGHKILLSVAFLLAGEKLIIGV 34
>gnl|CDD|206289 pfam14120, YhzD, YhzD-like protein. The YhzD-like protein family
includes the B. subtilis YhzD protein, which is
functionally uncharacterized. This family of proteins is
found in bacteria. Proteins in this family are
approximately 60 amino acids in length. There is a
conserved GKL sequence motif.
Length = 61
Score = 26.1 bits (58), Expect = 3.9
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 197 EAKKLGKFKLIDSGNTTTTEKIVDR----IVFHR 226
EAK++G+ +L + G T + V I+FHR
Sbjct: 28 EAKEIGEARLKEKGYEEHTHRCVRSSGKLILFHR 61
>gnl|CDD|234569 PRK00007, PRK00007, elongation factor G; Reviewed.
Length = 693
Score = 28.6 bits (65), Expect = 3.9
Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 4/19 (21%)
Query: 207 IDSGNTTTTEKIVDRIVFH 225
ID+G TTTTE RI+F+
Sbjct: 19 IDAGKTTTTE----RILFY 33
>gnl|CDD|129575 TIGR00484, EF-G, translation elongation factor EF-G. After peptide
bond formation, this elongation factor of bacteria and
organelles catalyzes the translocation of the tRNA-mRNA
complex, with its attached nascent polypeptide chain,
from the A-site to the P-site of the ribosome. Every
completed bacterial genome has at least one copy, but
some species have additional EF-G-like proteins. The
closest homolog to canonical (e.g. E. coli) EF-G in the
spirochetes clusters as if it is derived from
mitochondrial forms, while a more distant second copy is
also present. Synechocystis PCC6803 has a few proteins
more closely related to EF-G than to any other
characterized protein. Two of these resemble E. coli
EF-G more closely than does the best match from the
spirochetes; it may be that both function as authentic
EF-G [Protein synthesis, Translation factors].
Length = 689
Score = 28.6 bits (64), Expect = 4.2
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 194 PYSEAKKLGKFKLIDSGNTTTTEKIVDRIVFH 225
+ + +G ID+G TTTTE RI+F+
Sbjct: 6 DLNRFRNIGISAHIDAGKTTTTE----RILFY 33
>gnl|CDD|233449 TIGR01527, arch_NMN_Atrans, nicotinamide-nucleotide
adenylyltransferase. This model describes a family of
archaeal proteins with the activity of the NAD salvage
biosynthesis enzyme nicotinamide-nucleotide
adenylyltransferase (EC 2.7.7.1). In some cases, the
enzyme was tested and found also to have the activity of
nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18),
an enzyme of NAD de novo biosynthesis, although with a
higher Km. In some archaeal species, a lower-scoring
paralog, uncharacterized with respect to activity, is
also present. These score between trusted and noise
cutoffs [Biosynthesis of cofactors, prosthetic groups,
and carriers, Pyridine nucleotides].
Length = 165
Score = 27.9 bits (62), Expect = 5.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 95 GAYDLFHPGHLDFLEKAKQAGDYLIVGI 122
G + FH GHL+ ++K + D LI+GI
Sbjct: 6 GRFQPFHLGHLEVIKKIAEEVDELIIGI 33
>gnl|CDD|239330 cd03032, ArsC_Spx, Arsenate Reductase (ArsC) family, Spx subfamily;
Spx is a unique RNA polymerase (RNAP)-binding protein
present in bacilli and some mollicutes. It inhibits
transcription by binding to the C-terminal domain of the
alpha subunit of RNAP, disrupting complex formation
between RNAP and certain transcriptional activator
proteins like ResD and ComA. In response to oxidative
stress, Spx can also activate transcription, making it a
general regulator that exerts both positive and negative
control over transcription initiation. Spx has been
shown to exert redox-sensitive transcriptional control
over genes like trxA (TRX) and trxB (TRX reductase),
genes that function in thiol homeostasis. This
redox-sensitive activity is dependent on the presence of
a CXXC motif, present in some members of the Spx
subfamily, that acts as a thiol/disulfide switch. Spx
has also been shown to repress genes in a
sulfate-dependent manner independent of the presence of
the CXXC motif.
Length = 115
Score = 27.2 bits (61), Expect = 5.0
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 205 KLIDSGNTTTTEKIVDRIVFHRLEFERRNFEKENKEMK-LIELIESSKTGATGMVGATTY 263
KL S + ++ K + H++ FE RN K+ + L E++ ++ G ++
Sbjct: 3 KLYTSPSCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEILSLTENGVEDII----- 57
Query: 264 ATR-HTLKATNCNV 276
+TR K N ++
Sbjct: 58 STRSKAFKNLNIDI 71
>gnl|CDD|152107 pfam11671, Apis_Csd, Complementary sex determiner protein. This
family of proteins represents the complementary sex
determiner in the honeybee. In the honeybee, the
mechanism of sex determination depends on the csd gene
which produces an SR-type protein. Males are homozygous
while females are homozygous for the csd gene.
Heterozygosity generates an active protein which
initiates female development.
Length = 146
Score = 27.4 bits (60), Expect = 5.6
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 5 PPRPPLIRPWVPTR 18
PPRP ++RPWV +
Sbjct: 94 PPRPIMVRPWVSMQ 107
>gnl|CDD|217110 pfam02569, Pantoate_ligase, Pantoate-beta-alanine ligase.
Pantoate-beta-alanine ligase, also know as pantothenate
synthase, (EC:6.3.2.1) catalyzes the formation of
pantothenate from pantoate and alanine.
Length = 279
Score = 27.8 bits (62), Expect = 6.2
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 101 HPGHLDFLEKAKQAGDYLIVGI 122
H GHL +++A++ D ++V I
Sbjct: 34 HEGHLSLIDRARKENDVVVVSI 55
>gnl|CDD|202976 pfam04340, DUF484, Protein of unknown function, DUF484. This
family consists of several proteins of uncharacterized
function.
Length = 219
Score = 27.0 bits (60), Expect = 8.6
Identities = 16/101 (15%), Positives = 28/101 (27%), Gaps = 20/101 (19%)
Query: 38 LSMTSQHNASDVARPYERKARSPYTTCSSQFLLTTEKIRQFSEGRQPKPT-DRIVYVDGA 96
L + + DV R + AR FL+ + F + P + +
Sbjct: 85 LDLLDARSLEDVLRRVDASAR-------ELFLVAYVSLLLFHDSWVPGRSLSSAAFEQAR 137
Query: 97 YDLF------------HPGHLDFLEKAKQAGDYLIVGIHPD 125
D F E+A + G +V +
Sbjct: 138 GDRLGGGKPYLGRLRPAELLFLFGEEADEIGSVAVVPLSSQ 178
>gnl|CDD|218668 pfam05636, HIGH_NTase1, HIGH Nucleotidyl Transferase. This family
consists of HIGH Nucleotidyl Transferases.
Length = 389
Score = 27.3 bits (61), Expect = 9.7
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 19/93 (20%)
Query: 97 YDLFHPGHLDFLEKAK-QAGDYLIVGIHPDHVVAWYKGY----GYP-IMNLHERVLSVLA 150
Y+ FH GHL L +AK D +A G G P I++ ER L+
Sbjct: 10 YNPFHNGHLYHLNEAKKLTKA--------DVKIAVMSGNFVQRGEPAIIDKWERAKMALS 61
Query: 151 CKYVDEVVIGAPYTI---TADMLSQLRVDIVCR 180
D +VI P T +AD+ ++ V I+
Sbjct: 62 SG-AD-LVIELPVTYSTQSADIFAEGAVSILDS 92
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.400
Gapped
Lambda K H
0.267 0.0831 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,397,883
Number of extensions: 1378449
Number of successful extensions: 1412
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1391
Number of HSP's successfully gapped: 62
Length of query: 279
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 183
Effective length of database: 6,679,618
Effective search space: 1222370094
Effective search space used: 1222370094
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (25.9 bits)