RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11147
(279 letters)
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP,
CTP, phosphoethanolamine, cytidylyltra SGC, structural
genomics consortium; HET: C5P; 2.00A {Homo sapiens}
Length = 341
Score = 232 bits (593), Expect = 2e-75
Identities = 114/223 (51%), Positives = 150/223 (67%), Gaps = 11/223 (4%)
Query: 18 RTMEVQRTAGVSTTDLVGRMLSMTSQHNASDVARPYERKARSPYT---------TCSSQF 68
R E +RT GVSTTDLVGRML +T H++S R+ + T SQF
Sbjct: 119 RYRECKRTQGVSTTDLVGRMLLVTKAHHSSQEMSSEYREYADSFGKCPGGRNPWTGVSQF 178
Query: 69 LLTTEKIRQFSEGRQPKPTDRIVYVDGAYDLFHPGHLDFLEKAKQAGD--YLIVGIHPDH 126
L T++KI QF+ G++P+P + ++YV GA+DLFH GH+DFLEK + + Y+I G+H D
Sbjct: 179 LQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHFDQ 238
Query: 127 VVAWYKGYGYPIMNLHERVLSVLACKYVDEVVIGAPYTITADMLSQLRVDIVCRGLAAVL 186
V YKG YPIMNLHER LSVLAC+YV EVVIGAPY +TA++LS +VD+VC G ++
Sbjct: 239 EVNHYKGKNYPIMNLHERTLSVLACRYVSEVVIGAPYAVTAELLSHFKVDLVCHGKTEII 298
Query: 187 PDETGRDPYSEAKKLGKFKLIDSGNTTTTEKIVDRIVFHRLEF 229
PD G DPY E K+ G F+ IDSG+ TT+ IV RI+ +RLE+
Sbjct: 299 PDRDGSDPYQEPKRRGIFRQIDSGSNLTTDLIVQRIITNRLEY 341
Score = 150 bits (380), Expect = 1e-43
Identities = 56/164 (34%), Positives = 81/164 (49%), Gaps = 12/164 (7%)
Query: 80 EGRQPKPTDRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIM 139
GR+ V+ DG YD+ H GH + L +A+ GDYLIVG+H D +A +K G P+
Sbjct: 3 GGRRAV----RVWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEIAKHK--GPPVF 56
Query: 140 NLHERVLSVLACKYVDEVVIGAPYTITADMLSQLRVDIVCRGLAAVLPDETGRDPYSEAK 199
ER V A K+VDEVV APY T + L + D G + GRD Y E K
Sbjct: 57 TQEERYKMVQAIKWVDEVVPAAPYVTTLETLDKYNCDFCVHG-NDITLTVDGRDTYEEVK 115
Query: 200 KLGKFKLID--SGNTTTTEKIVDRIV-FHRLEFERRNFEKENKE 240
+ G+++ G +TT +V R++ + + E +E
Sbjct: 116 QAGRYRECKRTQGVSTT--DLVGRMLLVTKAHHSSQEMSSEYRE 157
>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold,
phospholipid synthesis, phosphatidylcholine,
phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A
{Rattus norvegicus}
Length = 236
Score = 160 bits (405), Expect = 2e-48
Identities = 60/231 (25%), Positives = 88/231 (38%), Gaps = 17/231 (7%)
Query: 27 GVSTTDLVGRMLSMTS------------QHNASDVARPYERKARSPYTTCSSQFLLTTEK 74
S+ + R A + A
Sbjct: 3 AQSSAKVNSRKRRKEVPGPNGATEEDGIPSKVQRCAVGLRQPAPFSDEIEVDFSKPYVRV 62
Query: 75 IRQFSEGRQPKPTDRIVYVDGAYDLFHPGHLDFLEKAKQA--GDYLIVGIHPDHVVAWYK 132
+ + P VY DG +DLFH GH L +AK YLIVG+ D + +K
Sbjct: 63 TMEEACRGTPCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFK 122
Query: 133 GYGYPIMNLHERVLSVLACKYVDEVVIGAPYTITADMLSQLRVDIVCRGLAAVLPDETGR 192
G+ +MN +ER +V C+YVDEVV AP+T+T + L++ R+D V
Sbjct: 123 GF--TVMNENERYDAVQHCRYVDEVVRNAPWTLTPEFLAEHRIDFVAHD-DIPYSSAGSD 179
Query: 193 DPYSEAKKLGKFKLIDSGNTTTTEKIVDRIVFHRLEFERRNFEKENKEMKL 243
D Y K+ G F +T I+ RIV + RRN ++ +L
Sbjct: 180 DVYKHIKEAGMFAPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKEL 230
Score = 40.0 bits (93), Expect = 4e-04
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 20 MEVQRTAGVSTTDLVGRMLSMTSQHNASDVARPYERK 56
QRT G+ST+D++ R++ + ++ R Y K
Sbjct: 192 APTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAK 228
>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A
{Staphylococcus aureus}
Length = 132
Score = 131 bits (331), Expect = 1e-38
Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 11/135 (8%)
Query: 89 RIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSV 148
+ V G YDL H GH++ L +A++ GDYLIV + D + +R + +
Sbjct: 2 KRVITYGTYDLLHYGHIELLRRAREMGDYLIVALSTDEFNQIKH--KKSYYDYEQRKMML 59
Query: 149 LACKYVDEVVIGAPYTITADMLSQLRVDIVCRGLAAVLPDETGRDPYSEAKKLGKFKLID 208
+ +YVD V+ + D + + VD+ G + K + +
Sbjct: 60 ESIRYVDLVIPEKGWGQKEDDVEKFDVDVFVMG-------HDWEGEFDFLKDKCEVIYLK 112
Query: 209 -SGNTTTTEKIVDRI 222
+ +TT KI +
Sbjct: 113 RTEGISTT-KIKQEL 126
Score = 29.4 bits (67), Expect = 0.57
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 21 EVQRTAGVSTTDLVGRMLS 39
++RT G+STT + +
Sbjct: 110 YLKRTEGISTTKIKQELYG 128
>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP;
2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A*
Length = 129
Score = 129 bits (327), Expect = 5e-38
Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 11/135 (8%)
Query: 89 RIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSV 148
+ V G +DL H GH+ LE+AKQ GDYL+V I D + + R L +
Sbjct: 2 KKVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQ--KKAYHSYEHRKLIL 59
Query: 149 LACKYVDEVVIGAPYTITADMLSQLRVDIVCRGLAAVLPDETGRDPYSEAKKLGKFKLID 208
+YVDEV+ + + +D+ G D+ + K + +
Sbjct: 60 ETIRYVDEVIPEKNWEQKKQDIIDHNIDVFVMG------DD-WEGKFDFLKDQCEVVYLP 112
Query: 209 -SGNTTTTEKIVDRI 222
+ +TT KI + I
Sbjct: 113 RTEGISTT-KIKEEI 126
Score = 29.4 bits (67), Expect = 0.52
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 21 EVQRTAGVSTTDLVGRMLSM 40
+ RT G+STT + + +
Sbjct: 110 YLPRTEGISTTKIKEEIAGL 129
>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI,
MCSG, protein structure initiative; HET: AMP; 1.99A
{Thermoplasma volcanium GSS1}
Length = 143
Score = 88.8 bits (221), Expect = 3e-22
Identities = 28/141 (19%), Positives = 60/141 (42%), Gaps = 13/141 (9%)
Query: 89 RIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSV 148
V G +D+ H GH+ +L+++K+ GD L+V + D PI + + R+ +
Sbjct: 3 IRVMATGVFDILHLGHIHYLKESKKLGDELVVVVARDSTAR--NNGKIPIFDENSRLALI 60
Query: 149 LACKYVDEVVIGAPYTITADMLSQLRVDIVCRGLAAVLPDETGRDPYSEAKKLG------ 202
K VD ++G + + +++ DI+ G + + + KLG
Sbjct: 61 SELKVVDRAILGHEGDMM-KTVIEVKPDIITLGYDQKFDEAELQS---KINKLGITVKIV 116
Query: 203 KFKLIDSGNTTTTEKIVDRIV 223
+ D +++ + +I+
Sbjct: 117 RISKYDGQLNSSS-SVRKKIM 136
>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown
function, structural genomics, MCSG, PSI-2, protein
structure initiative; 1.60A {Archaeoglobus fulgidus}
Length = 148
Score = 48.9 bits (116), Expect = 1e-07
Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 4/78 (5%)
Query: 90 IVYVDGAYDLFHPGHLDFLEKAKQ-AGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSV 148
V + G ++ H GH ++ A + G + +G+ D + + ++ R +V
Sbjct: 2 KVALGGTFEPLHEGHKKLIDVAIKLGGRDITIGVTSDRMA---RARIRSVLPFAIRAENV 58
Query: 149 LACKYVDEVVIGAPYTIT 166
IT
Sbjct: 59 KRYVMRKYGFEPEIVKIT 76
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 9e-04
Identities = 45/276 (16%), Positives = 81/276 (29%), Gaps = 76/276 (27%)
Query: 6 PRPPL---IRPWVPTRTMEVQRTAGVSTTDLVGRMLSMTSQHNASDVARPYERKARSPY- 61
R +R + +E++ V + G +L A DV Y+ + + +
Sbjct: 132 SRLQPYLKLRQAL----LELRPAKNVL---IDG-VLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 62 ------TTCSSQFLLTTEKIRQFSEGRQPKPTDRIVYVDGAYDLFHPGH------LDFLE 109
C+S + E +++ P T R D + ++ H L+
Sbjct: 184 IFWLNLKNCNSPETVL-EMLQKLLYQIDPNWTSRS---DHSSNIKLRIHSIQAELRRLLK 239
Query: 110 KAKQAGDYLIVGIHPDHVVAWYKGYGYPI---MNLHERVL----------SVLACKYVDE 156
L++ +V NL ++L + A
Sbjct: 240 SKPYENCLLVL----LNV--QNAK----AWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 157 VVIGAPYTITADMLSQLRVDIVCRGLAAVLPDETGRDPYSEAKKLGKF--KLIDSGNTTT 214
+ T+T D + L L L P E +I
Sbjct: 290 SLDHHSMTLTPDEVKSL--------LLKYLDCRPQDLP-REVLTTNPRRLSII------- 333
Query: 215 TEKIVDRIVFHRLEFERRNFEKENKEMKLIELIESS 250
E I D + + N++ N + KL +IESS
Sbjct: 334 AESIRDGL--ATWD----NWKHVNCD-KLTTIIESS 362
Score = 37.5 bits (86), Expect = 0.005
Identities = 29/170 (17%), Positives = 62/170 (36%), Gaps = 21/170 (12%)
Query: 101 HPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACKYVDEVVIG 160
H H+DF E + Y I A+ + ++ + S+L+ + +D ++
Sbjct: 3 HHHHMDF-ETGEH--QYQYKDILSVFEDAFVDNF--DCKDVQDMPKSILSKEEIDHII-M 56
Query: 161 APYTITA-----DMLSQLRVDIVCRGLAAVLPDETGRDPYS-EAKKLGKFKLIDSGNTTT 214
+ ++ L + ++V + + VL R Y + + S T
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL-----RINYKFLMSPIKTEQRQPSMMTRM 111
Query: 215 TEKIVDRIVFHRLEFERRNFEKENKEMK----LIELIESSKTGATGMVGA 260
+ DR+ F + N + +K L+EL + G++G+
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161
Score = 33.7 bits (76), Expect = 0.066
Identities = 36/241 (14%), Positives = 67/241 (27%), Gaps = 72/241 (29%)
Query: 15 VPTRTMEVQRTAGVSTT---DLVGRMLSMTSQHNASDVAR---------PYERKARSPYT 62
+ TR +V +TT L +++T S + + P E +P
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP-- 327
Query: 63 TCSSQFLLTT--EKIRQFSEGRQPKPTDRIVYVDG-----AYDLFHPGHLDFLEKAKQAG 115
L+ E IR D +V+ + L+ LE A+
Sbjct: 328 -----RRLSIIAESIRDG-----LATWDNWKHVNCDKLTTIIESS----LNVLEPAEYRK 373
Query: 116 DYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACKYVDEVVIGAPYTITADMLSQLRV 175
+ + + P I +LS++ + V+ ++++L
Sbjct: 374 MFDRLSVFPPSA---------HIP---TILLSLIWFDVIKSDVM--------VVVNKLHK 413
Query: 176 DIVCRGLAAVLPDETGRDPYSEAKKLGKFKLIDSGNTTTTEKIVDRIVFHRLEFERRNFE 235
L + P I S K+ + HR + N
Sbjct: 414 ----YSLVE-------KQPKESTIS------IPSIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 236 K 236
K
Sbjct: 457 K 457
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.002
Identities = 48/236 (20%), Positives = 74/236 (31%), Gaps = 92/236 (38%)
Query: 23 QRTAGVSTTDLV---------------GRML-----SMTSQHNASDVARPYERKARSPYT 62
+ T G S D+V G+ + +M + + +
Sbjct: 1654 KDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEH 1713
Query: 63 TCSSQF-----LLT-TEKIRQFSEGRQPKPTDRIVYVDGAYDLFHPGHLDFLEKAKQAGD 116
+ S F LL+ T QF+ QP + ++ A E K G
Sbjct: 1714 STSYTFRSEKGLLSAT----QFT---QP----ALTLMEKA----------AFEDLKSKG- 1751
Query: 117 YLIVGIHPDHVVAWYKGYGYPIMNLH---ERVLSVLACKYVDEVVIGAPYTITADMLS-- 171
I D A G H E + LA AD++S
Sbjct: 1752 ----LIPADATFA-----G------HSLGE--YAALAS--------------LADVMSIE 1780
Query: 172 QLRVDIVC-RGLA---AVLPDETGRDPYS-EAKKLGKFKLIDSGNTTTTEKIVDRI 222
L V++V RG+ AV DE GR Y A G+ S + + +V+R+
Sbjct: 1781 SL-VEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAA--SFSQEALQYVVERV 1833
Score = 36.2 bits (83), Expect = 0.014
Identities = 32/243 (13%), Positives = 67/243 (27%), Gaps = 72/243 (29%)
Query: 29 STTDLVGRMLSMTSQHNASDVARPYERKARSPYTTCSSQFLLTTE------KIRQFSEGR 82
+ +LVG+ L S +++ T + +L + K+ Q ++
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTT 115
Query: 83 QPKPTDRI-VYVDGAYDLFHP---GHLDFLEKAKQAGD---YLIVG-------------- 121
K + I Y+ P L +A G+ I G
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD 175
Query: 122 IHPDHVVAWYKGYGYPIMNLHERVLSVLA----------CKYVD--------------EV 157
++ Y ++ LS L + ++ +
Sbjct: 176 LYQT-----YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY 230
Query: 158 VIGAPYTITADMLSQL-RVDIVCRGLAAVLPDETGRDPYSEAKKLGKFKLIDSGNTTTTE 216
++ P + + QL + + L G P G+ + G T ++
Sbjct: 231 LLSIPISCPLIGVIQLAHYVVTAKLL--------GFTP-------GELRSYLKGATGHSQ 275
Query: 217 KIV 219
+V
Sbjct: 276 GLV 278
Score = 32.7 bits (74), Expect = 0.14
Identities = 25/155 (16%), Positives = 54/155 (34%), Gaps = 53/155 (34%)
Query: 108 LEKAKQAGDYLIVGIHPDH-VVAWYKGYGYPI----MNLHERVLSVLACKYVDE------ 156
L KQ L+ G + VV+ G P +NL R A +D+
Sbjct: 360 LPAGKQVEISLVNG--AKNLVVS-----GPPQSLYGLNLTLR--KAKAPSGLDQSRIPFS 410
Query: 157 ----------VVIGAPY-----TITADMLSQ--LRVDIVCRG--LA-AVLPDETGRDPYS 196
+ + +P+ +D++++ ++ ++ + V G D
Sbjct: 411 ERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD--- 467
Query: 197 EAKKLGKFKLIDSGNTTTTEKIVDRIVFHRLEFER 231
+ + + +E+IVD I+ +++E
Sbjct: 468 ----------LRVLSGSISERIVDCIIRLPVKWET 492
Score = 31.2 bits (70), Expect = 0.52
Identities = 24/136 (17%), Positives = 39/136 (28%), Gaps = 55/136 (40%)
Query: 106 DFLEKAKQAGDYL-IVGIH----------PDHVV--AWYKGYGYPI-MNLHERVLSVLAC 151
F ++A L +G+ P ++ + G P M LS+
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM------LSISNL 344
Query: 152 ------KYVDE----------------------VVIGAPYTITADMLSQLRVDIVCRGLA 183
YV++ VV G P S +++ R
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPP-------QSLYGLNLTLRKAK 397
Query: 184 AVLPDETGRDPYSEAK 199
A + R P+SE K
Sbjct: 398 APSGLDQSRIPFSERK 413
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase,
ribosylnicotinamide KINA transferase; HET: NAD; 2.90A
{Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Length = 365
Score = 37.6 bits (86), Expect = 0.003
Identities = 14/108 (12%), Positives = 33/108 (30%), Gaps = 4/108 (3%)
Query: 89 RIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGY---PIMNLHERV 145
++ + G + H GH++ + +A D L V + D V Y + + +R+
Sbjct: 3 KVGVIFGKFYPVHTGHINMIYEAFSKVDELHVIVCSDTVRDLKLFYDSKMKRMPTVQDRL 62
Query: 146 LSVL-ACKYVDEVVIGAPYTITADMLSQLRVDIVCRGLAAVLPDETGR 192
+ KY + + + ++
Sbjct: 63 RWMQQIFKYQKNQIFIHHLVEDGIPSYPNGWQSWSEAVKTLFHEKHFE 110
>3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural
genomics, PSI, MCS protein structure initiative; 1.91A
{Methanocaldococcus jannaschii}
Length = 357
Score = 36.1 bits (83), Expect = 0.008
Identities = 24/95 (25%), Positives = 33/95 (34%), Gaps = 15/95 (15%)
Query: 97 YDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYP-IMNLHERVLSVLACKYVD 155
Y+ H GH LEK K+ I + + G P +N + R + D
Sbjct: 61 YNPLHKGHKYALEKGKEH-GIFISVLPGPLERSG---RGIPYFLNRYIRAEMAIRAG-AD 115
Query: 156 EVVIGAPYTITA---------DMLSQLRVDIVCRG 181
VV G P I M L +I+ RG
Sbjct: 116 IVVEGPPMGIMGSGQYMRCLIKMFYSLGAEIIPRG 150
>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural
genomics; HET: ATP; 2.00A {Methanocaldococcus
jannaschii} SCOP: c.26.1.3
Length = 168
Score = 34.8 bits (80), Expect = 0.012
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 89 RIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERV 145
R + G + FH GHL+ ++K + D +I+GI A ER+
Sbjct: 2 RGFII-GRFQPFHKGHLEVIKKIAEEVDEIIIGI----GSAQKSHTLENPFTAGERI 53
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual
domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis
SP}
Length = 341
Score = 33.8 bits (77), Expect = 0.048
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 88 DRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGI 122
+Y+ G + FH GHL L A + + +I+ +
Sbjct: 8 QYGIYI-GRFQPFHLGHLRTLNLALEKAEQVIIIL 41
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual
domains, hydrolase; HET: AMP; 2.30A {Francisella
tularensis} PDB: 2r5w_B
Length = 352
Score = 33.4 bits (76), Expect = 0.062
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 81 GRQPKPTDRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGI 122
G D V++ G + FH GHL + A Q +I+ I
Sbjct: 1 GAMDPMYDISVFI-GRFQPFHKGHLHNIIIALQNSKKVIINI 41
>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695
strain, mutant I4V/N76Y, phosphopa adenylyltransferase;
1.75A {Helicobacter pylori} PDB: 3otw_A*
Length = 157
Score = 31.3 bits (72), Expect = 0.15
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 95 GAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERV-LSVLACKY 153
G +D GH+D + ++ + + LIV + K P+ +L ER+ + LA K
Sbjct: 9 GTFDPVTNGHIDIIHRSSELFEKLIVAVAHSS----AKN---PMFSLDERLKMIQLATKS 61
Query: 154 VDEVVIGAPYTITADMLSQLRVDIVCRGLAAV 185
V A + A + + ++ RGL V
Sbjct: 62 FKNVECVAFEGLLAYLAKEYHCKVLVRGLRVV 93
>3nd5_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO
pathway; 2.30A {Enterococcus faecalis} PDB: 3nd6_A*
3nd7_A*
Length = 171
Score = 31.3 bits (72), Expect = 0.20
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 95 GAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERV-LSVLACKY 153
G++D GHL+ +E++ + D +I+G+ + K + E+ L A K
Sbjct: 9 GSFDPMTNGHLNLIERSAKLFDEVIIGVFINT----SKQ---TLFTPEEKKYLIEEATKE 61
Query: 154 VDEV-VIGAPYTITADMLSQLRVDIVCRGLAAV 185
+ V VI +T + L + + RG+ V
Sbjct: 62 MPNVRVIMQETQLTVESAKSLGANFLIRGIRNV 94
>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis,
nucleotidyltransferase; HET: PNS; 1.64A {Escherichia
coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A*
3l92_A* 3l93_A
Length = 158
Score = 30.9 bits (71), Expect = 0.22
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 95 GAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERV-LSVLACKY 153
G +D GH+D + +A Q D++I+ I K P+ L ERV L+ A +
Sbjct: 8 GTFDPITNGHIDIVTRATQMFDHVILAIAASP----SKK---PMFTLEERVALAQQATAH 60
Query: 154 VDEVVIGAPYTITADMLSQLRVDIVCRGLAAV 185
+ V + + A+ ++ RGL AV
Sbjct: 61 LGNVEVVGFSDLMANFARNQHATVLIRGLRAV 92
>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle
structural genomics center for infect disease, coenzyme
A, COA; HET: 4PS ADE PG4; 1.60A {Burkholderia
pseudomallei} PDB: 3ikz_A* 3pxu_A*
Length = 187
Score = 31.0 bits (71), Expect = 0.22
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 95 GAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERV-LSVLACKY 153
G +D GH D + +A D L+VG+ K P +L ER+ ++ +
Sbjct: 29 GTFDPLTRGHEDLVRRASSIFDTLVVGVADSR----AKK---PFFSLEERLKIANEVLGH 81
Query: 154 VDEVVIGAPYTITADMLSQLRVDIVCRGLAAV 185
V + + D + ++ RGL AV
Sbjct: 82 YPNVKVMGFTGLLKDFVRANDARVIVRGLRAV 113
>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO
pathway, coenzyme A biosynthesis,
nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus
aureus}
Length = 168
Score = 30.6 bits (70), Expect = 0.33
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 95 GAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERV-LSVLACKY 153
G++D GHLD +E++ D + V + + K +L ER+ L + K+
Sbjct: 10 GSFDPITYGHLDIIERSTDRFDEIHVCVLKNS----KKE---GTFSLEERMDLIEQSVKH 62
Query: 154 VDEVVIGAPYTITADMLSQLRVDIVCRGLAAV 185
+ V + + D Q+ + RGL AV
Sbjct: 63 LPNVKVHQFSGLLVDYCEQVGAKTIIRGLRAV 94
>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide
binding fold, structural genomics, PSI; HET: NAD; 1.90A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A*
1m8k_A*
Length = 181
Score = 30.7 bits (69), Expect = 0.37
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 87 TDRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGI 122
T R + V G FH GHL ++ + D LI+ I
Sbjct: 3 TMRGLLV-GRMQPFHRGHLQVIKSILEEVDELIICI 37
>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET:
ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3
Length = 169
Score = 30.2 bits (69), Expect = 0.42
Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 95 GAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERV-LSVLACKY 153
G++D GHLD +++ + + V + + K P+ ++ ER L K
Sbjct: 9 GSFDPVTYGHLDIIKRGAHIFEQVYVCVLNNS----SKK---PLFSVEERCELLREVTKD 61
Query: 154 VDEVVIGAPYTITADMLSQLRVDIVCRGLAAV 185
+ + + + D + + RGL AV
Sbjct: 62 IPNITVETSQGLLIDYARRKNAKAILRGLRAV 93
>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine
adenylyltranferase; 2.25A {Coxiella burnetii}
Length = 162
Score = 29.8 bits (68), Expect = 0.62
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Query: 95 GAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACKYV 154
G +D GH+D +E+A + +IV P K P + L ERV +
Sbjct: 12 GTFDPLTNGHVDIIERALPLFNKIIVACAPTS----RKD---PHLKLEERVNLIADVLTD 64
Query: 155 DEVVIGAPYTITADMLSQLRVDIVCRGLAAV 185
+ V + + D + + + RGL AV
Sbjct: 65 ERVEVLPLTGLLVDFAKTHQANFILRGLRAV 95
>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A
{Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A*
3lcj_A* 3rba_A* 1tfu_A* 3rff_A 3rhs_A*
Length = 177
Score = 29.4 bits (67), Expect = 0.86
Identities = 17/92 (18%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 95 GAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERV-LSVLACKY 153
G++D GH+D E+A D ++V I + K + +L ER+ + + +
Sbjct: 28 GSFDPVTLGHVDIFERAAAQFDEVVVAILVNP----AKT---GMFDLDERIAMVKESTTH 80
Query: 154 VDEVVIGAPYTITADMLSQLRVDIVCRGLAAV 185
+ + + + + D + + + +GL
Sbjct: 81 LPNLRVQVGHGLVVDFVRSCGMTAIVKGLRTG 112
>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel,
metallo-enzyme, STRU function project, S2F, unknown
function; 1.57A {Escherichia coli} SCOP: c.6.3.1 PDB:
1m68_A 1pb0_A
Length = 245
Score = 29.7 bits (67), Expect = 0.97
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 8/62 (12%)
Query: 99 LFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACKYVDEVV 158
G +D K + D +I G H K + +++ +A V +
Sbjct: 77 KNVDGEIDCSGKMFDSLDLIIAGFHEPVFAPHDKATNT------QAMIATIASGNVH--I 128
Query: 159 IG 160
I
Sbjct: 129 IS 130
>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A
biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A
{Thermus thermophilus} SCOP: c.26.1.3
Length = 160
Score = 29.0 bits (66), Expect = 1.1
Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 89 RIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERV-LS 147
+VY G++D GHLD +++A + + + V + + K G + + ER+ +
Sbjct: 2 HVVY-PGSFDPLTNGHLDVIQRASRLFEKVTVAVLENP----SKR-GQYLFSAEERLAII 55
Query: 148 VLACKYVDEVVIGAPYTITADMLSQLRVDIVCRGLAAV 185
A ++ V + D + ++ + +GL AV
Sbjct: 56 REATAHLANVEAATFSGLLVDFVRRVGAQAIVKGLRAV 93
>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural G JCSG,
protein structure initiative, PSI, joint center for S
genomics; HET: PNS; 2.20A {Thermotoga maritima} SCOP:
c.26.1.3
Length = 173
Score = 28.6 bits (65), Expect = 1.5
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 95 GAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERV-LSVLACKY 153
G++D GH+D +++A D L+V + + K + L ER L
Sbjct: 19 GSFDPITLGHVDIIKRALSIFDELVVLVTENP----RKK---CMFTLEERKKLIEEVLSD 71
Query: 154 VDEVVIGAPYTITADMLSQLRVDIVCRGLAAV 185
+D V + + + D L + + ++ RGL AV
Sbjct: 72 LDGVKVDVHHGLLVDYLKKHGIKVLVRGLRAV 103
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP,
50S subunit, cryo-EM, REAL-space refinement,
ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Length = 704
Score = 28.6 bits (65), Expect = 2.9
Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 4/19 (21%)
Query: 207 IDSGNTTTTEKIVDRIVFH 225
ID+G TTTTE RI+F+
Sbjct: 19 IDAGKTTTTE----RILFY 33
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational
GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A
2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A*
1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A*
3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Length = 691
Score = 28.2 bits (64), Expect = 3.0
Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 4/19 (21%)
Query: 207 IDSGNTTTTEKIVDRIVFH 225
ID+G TTTTE RI+++
Sbjct: 21 IDAGKTTTTE----RILYY 35
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein;
1.90A {Staphylococcus aureus}
Length = 693
Score = 28.2 bits (64), Expect = 3.0
Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 4/19 (21%)
Query: 207 IDSGNTTTTEKIVDRIVFH 225
ID+G TTTTE RI+++
Sbjct: 19 IDAGKTTTTE----RILYY 33
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing,
fatty acid metabolism, lipid transport, lipid binding
protein; HET: STE ST9 COA; 2.60A {Homo sapiens}
Length = 106
Score = 26.9 bits (59), Expect = 3.4
Identities = 20/112 (17%), Positives = 33/112 (29%), Gaps = 26/112 (23%)
Query: 58 RSPYTTCSSQFLLTTEKIRQFSEGRQPKPTDRI---VY------VDGAYDLFHPGHLDFL 108
SP C QF I+ + +P+ Y G + PG D +
Sbjct: 2 MSPEPDCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPGFWDPI 61
Query: 109 EKAKQAGDYLIVGIHPDHVVAWYKGYGYPI---MNLHERVLSVLACKYVDEV 157
+ K AW M+ + + ++A K +D V
Sbjct: 62 GRYKWD--------------AWNSLGKMSREEAMSAYITEMKLVAQKVIDTV 99
>3inn_A Pantothenate synthetase; ssgcid, SBRI, UW, decode, NIH, niaid,
pantoate beta alanine ligase, ATP-binding, cytoplasm,
ligase; HET: ATP; 2.10A {Brucella melitensis}
Length = 314
Score = 28.0 bits (63), Expect = 3.9
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 101 HPGHLDFLEKAKQAGDYLIVGI 122
H GHL+ + +A+ D +V I
Sbjct: 55 HKGHLELVRRARVENDVTLVSI 76
>3uk2_A Pantothenate synthetase; AMP, structural genomics, seattle S
genomics center for infectious disease, ssgcid, ligase;
HET: AMP; 2.25A {Burkholderia thailandensis}
Length = 283
Score = 27.5 bits (62), Expect = 4.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 101 HPGHLDFLEKAKQAGDYLIVGI 122
H GHL + A+Q GD ++ I
Sbjct: 34 HEGHLSLMRLARQHGDPVVASI 55
>3n8h_A Pantothenate synthetase; alpha-beta sandwich, ligase, structural
genomics, structural of infectious diseases; HET: MSE
AMP GOL; 2.00A {Francisella tularensis subsp} PDB:
3qtt_A*
Length = 264
Score = 27.5 bits (62), Expect = 4.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 101 HPGHLDFLEKAKQAGDYLIVGI 122
H GH+ ++KAK D +IV I
Sbjct: 36 HNGHISLIKKAKSENDVVIVSI 57
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken
structural genomics/proteomics in RSGI, polxc, PHP, DRP
lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB:
3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Length = 575
Score = 27.8 bits (61), Expect = 4.8
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 10/65 (15%)
Query: 98 DLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACKYVDEV 157
D+ G LD+ + + D ++V +H + P + +R+L L +V
Sbjct: 415 DIHPDGTLDYPDWVLRELDLVLVSVH--------SRFNLPKADQTKRLLKALENPFVH-- 464
Query: 158 VIGAP 162
V+ P
Sbjct: 465 VLAHP 469
>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for
structural genomics of infec diseases, csgid; HET: PAF;
1.58A {Yersinia pestis} PDB: 3q10_A* 3mue_A 1iho_A
3guz_A*
Length = 287
Score = 27.5 bits (62), Expect = 5.2
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 101 HPGHLDFLEKAKQAGDYLIVGI 122
H GH+ +++AK D ++V I
Sbjct: 37 HEGHMTLVDEAKTRADVVVVTI 58
>3ag6_A Pantothenate synthetase; ATP-dependent enzyme, ATP-binding,
nucleotide-binding, pantothenate biosynthesis; HET: PAJ
PG4; 1.85A {Staphylococcus aureus} PDB: 3ag5_A* 2x3f_A*
Length = 283
Score = 27.1 bits (61), Expect = 5.9
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 101 HPGHLDFLEKAKQAGDYLIVGI 122
H GHL + ++ D IV +
Sbjct: 35 HDGHLTMVRESVSTNDITIVSV 56
>1v8f_A Pantoate-beta-alanine ligase; rossmann fold, dimer, structural
genomics, riken STR genomics/proteomics initiative,
RSGI; HET: P6G; 1.90A {Thermus thermophilus} SCOP:
c.26.1.4 PDB: 1ufv_A
Length = 276
Score = 27.1 bits (61), Expect = 6.8
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 101 HPGHLDFLEKAKQAGDYLIVGI 122
H GHL +E+A++ +++V +
Sbjct: 29 HRGHLALVERARRENPFVVVSV 50
>3og2_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family
35, glycoprot hydrolase; HET: NAG BMA MAN GLC; 1.20A
{Trichoderma reesei} PDB: 3ogr_A* 3ogs_A* 3ogv_A*
Length = 1003
Score = 27.1 bits (59), Expect = 7.7
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 6/52 (11%)
Query: 86 PTDRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYP 137
DG + L F E A +AG YL+ P ++ A G G+P
Sbjct: 84 GKPGRFRADGIFSLEP-----FFEAATKAGIYLLARPGP-YINAEVSGGGFP 129
>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 2.40A {Thermotoga maritima}
Length = 280
Score = 26.7 bits (60), Expect = 7.7
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 101 HPGHLDFLEKAKQAGDYLIVGI 122
H GHL + +A+ D ++V I
Sbjct: 34 HEGHLSLVRRARAENDVVVVSI 55
>2dy1_A Elongation factor G; translocation, GTP complex, structural
genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus}
SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1
PDB: 1wdt_A*
Length = 665
Score = 27.1 bits (61), Expect = 8.0
Identities = 6/19 (31%), Positives = 9/19 (47%), Gaps = 4/19 (21%)
Query: 207 IDSGNTTTTEKIVDRIVFH 225
SG TT TE +++
Sbjct: 18 AGSGKTTLTE----ALLYK 32
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 26.8 bits (60), Expect = 8.6
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 204 FKLIDSGNTTTTEKIVD-RIV--FHRLEFERRNFEKENKEMK 242
+ D N E ++ R+V F R E+E NF K N+ ++
Sbjct: 195 QESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLR 236
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.400
Gapped
Lambda K H
0.267 0.0834 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,405,281
Number of extensions: 270795
Number of successful extensions: 830
Number of sequences better than 10.0: 1
Number of HSP's gapped: 813
Number of HSP's successfully gapped: 54
Length of query: 279
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 187
Effective length of database: 4,133,061
Effective search space: 772882407
Effective search space used: 772882407
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.5 bits)