RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11147
(279 letters)
>d1coza_ c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltransferase
{Bacillus subtilis [TaxId: 1423]}
Length = 126
Score = 74.6 bits (182), Expect = 2e-17
Identities = 33/134 (24%), Positives = 53/134 (39%), Gaps = 9/134 (6%)
Query: 89 RIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSV 148
+ V G +DL H GH+ LE+AKQ GDYL+V I D + + R L +
Sbjct: 2 KKVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEF--NLQKQKKAYHSYEHRKLIL 59
Query: 149 LACKYVDEVVIGAPYTITADMLSQLRVDIVCRGLAAVLPDETGRDPYSEAKKLGKFKLID 208
+YVDEV+ + + +D+ G + + K + +
Sbjct: 60 ETIRYVDEVIPEKNWEQKKQDIIDHNIDVFVMG-------DDWEGKFDFLKDQCEVVYLP 112
Query: 209 SGNTTTTEKIVDRI 222
+T KI + I
Sbjct: 113 RTEGISTTKIKEEI 126
Score = 24.9 bits (53), Expect = 6.7
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 18 RTMEVQRTAGVSTTDLVGRM 37
+ + RT G+STT + +
Sbjct: 107 EVVYLPRTEGISTTKIKEEI 126
>d1lw7a1 c.26.1.3 (A:57-219) Transcriptional regulator NadR,
NMN-adenylyltransferase domain {Haemophilus influenzae
[TaxId: 727]}
Length = 163
Score = 48.3 bits (114), Expect = 1e-07
Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Query: 89 RIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGY---PIMNLHERV 145
++ + G + H GH++ + +A D L V + D V Y + + +R+
Sbjct: 3 KVGVIFGKFYPVHTGHINMIYEAFSKVDELHVIVCSDTVRDLKLFYDSKMKRMPTVQDRL 62
Query: 146 LSVLACKYVDEVVI 159
+ + I
Sbjct: 63 RWMQQIFKYQKNQI 76
>d1ej2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN)
adenylyltransferase {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 167
Score = 34.8 bits (79), Expect = 0.005
Identities = 16/107 (14%), Positives = 31/107 (28%), Gaps = 4/107 (3%)
Query: 89 RIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSV 148
R + V G FH GHL ++ + D LI+ I ++ + +
Sbjct: 2 RGLLV-GRMQPFHRGHLQVIKSILEEVDELIICI-GSAQLSHSIRDPFTAGERVMMLTKA 59
Query: 149 LACKYVDEVVIGAPYTITADMLSQLRVDIVCRGLAAVLPDETGRDPY 195
L+ + + + I + L +P
Sbjct: 60 LSENGIPASRYYIIPVQDIECNALWVGHI--KMLTPPFDRVYSGNPL 104
>d1f9aa_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN)
adenylyltransferase {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 164
Score = 34.4 bits (78), Expect = 0.007
Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 4/92 (4%)
Query: 89 RIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVG---IHPDHVVAWYKGYGYPIMNLHERV 145
R + G + FH GHL+ ++K + D +I+G H + G I+ + + +
Sbjct: 2 RGFII-GRFQPFHKGHLEVIKKIAEEVDEIIIGIGSAQKSHTLENPFTAGERILMITQSL 60
Query: 146 LSVLACKYVDEVVIGAPYTITADMLSQLRVDI 177
Y + +I + L
Sbjct: 61 KDYDLTYYPIPIKDIEFNSIWVSYVESLTPPF 92
>d1vlha_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase
{Thermotoga maritima [TaxId: 2336]}
Length = 157
Score = 31.8 bits (71), Expect = 0.042
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 89 RIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHE 143
+ VY G++D GH+D +++A D L+V + + + E
Sbjct: 2 KAVYP-GSFDPITLGHVDIIKRALSIFDELVVLVTENPRKKCMFTLEERKKLIEE 55
>d1o6ba_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase
{Bacillus subtilis [TaxId: 1423]}
Length = 163
Score = 31.5 bits (70), Expect = 0.056
Identities = 12/80 (15%), Positives = 25/80 (31%)
Query: 95 GAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACKYV 154
G++D GHLD +++ + + V + + L E +
Sbjct: 8 GSFDPVTYGHLDIIKRGAHIFEQVYVCVLNNSSKKPLFSVEERCELLREVTKDIPNITVE 67
Query: 155 DEVVIGAPYTITADMLSQLR 174
+ Y + + LR
Sbjct: 68 TSQGLLIDYARRKNAKAILR 87
>d1qjca_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase
{Escherichia coli [TaxId: 562]}
Length = 157
Score = 30.7 bits (68), Expect = 0.11
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 95 GAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDH 126
G +D GH+D + +A Q D++I+ I
Sbjct: 7 GTFDPITNGHIDIVTRATQMFDHVILAIAASP 38
>d1kama_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN)
adenylyltransferase {Bacillus subtilis [TaxId: 1423]}
Length = 189
Score = 30.9 bits (68), Expect = 0.11
Identities = 9/55 (16%), Positives = 16/55 (29%)
Query: 89 RIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHE 143
+I G +D H GHL + + P+ + + Y
Sbjct: 3 KIGIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIPPHKQNEDYTDSFHRV 57
>d1od6a_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase
{Thermus thermophilus [TaxId: 274]}
Length = 160
Score = 29.2 bits (64), Expect = 0.35
Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 89 RIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIV 120
+VY G++D GHLD +++A + + + V
Sbjct: 2 HVVYP-GSFDPLTNGHLDVIQRASRLFEKVTV 32
>d1v8fa_ c.26.1.4 (A:) Pantothenate synthetase
(Pantoate-beta-alanine ligase, PanC) {Thermus
thermophilus [TaxId: 274]}
Length = 276
Score = 29.4 bits (65), Expect = 0.40
Identities = 17/118 (14%), Positives = 36/118 (30%), Gaps = 2/118 (1%)
Query: 101 HPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYKGYGYPIMNLHERVLSVLACKYVDEVVIG 160
H GHL +E+A++ +++V + + + + G Y L + +++
Sbjct: 29 HRGHLALVERARRENPFVVVSVFV-NPLQFGPGEDYHRYPRDLERDRALLQEAGVDLLFA 87
Query: 161 APYTITADMLSQLRVDIVCRGLAAVLPDETGRDPYSEAKKLGKF-KLIDSGNTTTTEK 217
RV + A A + + L+ EK
Sbjct: 88 PGVEEMYPEGFATRVQVEGPLTALWEGAVRPGHFQGVATVVARLFLLVQPQRAYFGEK 145
>d1tfua_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 157
Score = 28.8 bits (63), Expect = 0.44
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 95 GAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDH 126
G++D GH+D E+A D ++V I +
Sbjct: 8 GSFDPVTLGHVDIFERAAAQFDEVVVAILVNP 39
>d1jnya2 b.44.1.1 (A:323-429) Elongation factor eEF-1alpha,
C-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 107
Score = 26.5 bits (58), Expect = 1.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 193 DPYSEAKKLGKFKLIDSGNT 212
+ Y+E LG+F + D G T
Sbjct: 77 EKYNEFPPLGRFAMRDMGKT 96
>d1k4ma_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN)
adenylyltransferase {Escherichia coli [TaxId: 562]}
Length = 213
Score = 27.0 bits (58), Expect = 2.1
Identities = 11/52 (21%), Positives = 14/52 (26%), Gaps = 4/52 (7%)
Query: 95 GAYDLFHPGHLDFLEKAKQAGD----YLIVGIHPDHVVAWYKGYGYPIMNLH 142
G +D H GHL +E +I P H L
Sbjct: 10 GTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPPHRPQPEANSVQRKHMLE 61
>d1nuua_ c.26.1.3 (A:) Cytosolic NMN/NAMN adenylyltransferase {Human
(Homo sapiens), FKSG76 [TaxId: 9606]}
Length = 233
Score = 26.4 bits (57), Expect = 3.8
Identities = 5/46 (10%), Positives = 15/46 (32%)
Query: 87 TDRIVYVDGAYDLFHPGHLDFLEKAKQAGDYLIVGIHPDHVVAWYK 132
++ G+++ HL E A+ + +++
Sbjct: 3 IPVVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVN 48
>d1ihoa_ c.26.1.4 (A:) Pantothenate synthetase
(Pantoate-beta-alanine ligase, PanC) {Escherichia coli
[TaxId: 562]}
Length = 282
Score = 26.3 bits (57), Expect = 4.7
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
Query: 101 HPGHLDFLEKAKQAGDYLIVGIHPD-HVVAWYKGYGYPIMNLHERVLSVLACKYVDEVVI 159
H GH+ +++AK D ++V I + + L L + VD V
Sbjct: 34 HDGHMKLVDEAKARADVVVVSIFVNPMQFDRPEDLARYPRTLQ-EDCEKLNKRKVDLVFA 92
Query: 160 GAPYTITADM 169
+ I +
Sbjct: 93 PSVKEIYPNG 102
>d1luaa2 c.58.1.4 (A:2-97) Methylene-tetrahydromethanopterin
dehydrogenase {Methylobacterium extorquens [TaxId:
408]}
Length = 96
Score = 24.6 bits (54), Expect = 6.9
Identities = 8/22 (36%), Positives = 9/22 (40%)
Query: 77 QFSEGRQPKPTDRIVYVDGAYD 98
QF P D +V DG D
Sbjct: 7 QFDTDATPSVFDVVVGYDGGAD 28
>d1zunb2 b.44.1.1 (B:330-434) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain 3-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 105
Score = 24.6 bits (53), Expect = 7.9
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 192 RDPYSEAKKLGKFKLID--SGNTTTTEKIV 219
D YS + G F +ID + T I+
Sbjct: 75 LDGYSSNRTTGAFIVIDRLTNGTVAAGMII 104
>d1yoxa1 b.82.5.2 (A:5-244) Hypothetical protein PA3696 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 240
Score = 25.3 bits (55), Expect = 8.5
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 2/24 (8%)
Query: 115 GDYLIVGIHPDHVVAWYKGYGYPI 138
G+ L V +VA+ G Y +
Sbjct: 166 GETLRV--DTGCLVAFTDGIDYDV 187
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.400
Gapped
Lambda K H
0.267 0.0566 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,059,750
Number of extensions: 49728
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 24
Length of query: 279
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 195
Effective length of database: 1,254,276
Effective search space: 244583820
Effective search space used: 244583820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.2 bits)