Query psy11148
Match_columns 703
No_of_seqs 16 out of 18
Neff 1.5
Searched_HMMs 46136
Date Fri Aug 16 19:14:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11148.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11148hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05616 Neisseria_TspB: Neiss 99.4 3.2E-12 7E-17 134.6 11.4 56 318-380 435-491 (502)
2 PF05616 Neisseria_TspB: Neiss 98.1 1.2E-05 2.6E-10 85.9 9.3 20 3-22 169-188 (502)
3 PHA03247 large tegument protei 81.0 90 0.002 41.0 18.5 12 453-464 2913-2924(3151)
4 PHA03247 large tegument protei 76.7 1.7E+02 0.0037 38.8 19.0 9 607-615 3040-3048(3151)
5 KOG0307|consensus 59.1 4.1E+02 0.0089 32.4 18.5 23 80-102 710-732 (1049)
6 KOG1924|consensus 58.4 83 0.0018 37.5 10.8 19 493-511 896-914 (1102)
7 KOG1924|consensus 43.9 1.6E+02 0.0034 35.4 10.1 6 331-336 739-744 (1102)
8 cd01373 KISc_KLP2_like Kinesin 20.3 2.2E+02 0.0048 28.8 5.6 38 362-399 57-94 (337)
9 cd01365 KISc_KIF1A_KIF1B Kines 17.8 2.1E+02 0.0046 29.0 4.9 39 360-398 69-107 (356)
10 KOG0307|consensus 17.7 1.9E+03 0.041 27.2 13.0 117 142-258 786-902 (1049)
No 1
>PF05616 Neisseria_TspB: Neisseria meningitidis TspB protein; InterPro: IPR008708 This family consists mainly of Neisseria meningitidis TspB virulence factor proteins.
Probab=99.36 E-value=3.2e-12 Score=134.61 Aligned_cols=56 Identities=20% Similarity=0.208 Sum_probs=49.2
Q ss_pred eccccceeEEEeeecCC-CCCceeEEecCCCccccccCCCCccccchhhccchhhhhccCCCCC
Q psy11148 318 TSNTTNQAITIVKREKS-PDRDCVQVKADPPVSKTTSDKEPENKCRFFSTNFKKLLQLVPRIPP 380 (703)
Q Consensus 318 TSNT~~~aIsIglr~~~-P~~~~VqV~g~PlvS~~~sd~ePen~CeF~st~~R~LllL~~R~~~ 380 (703)
+-|++-.-+.|+...|+ |.+..++|||..+. |+|+| +|+|+. +||+||+++.=+.+
T Consensus 435 t~~~tfsp~nif~~sGvCPaPktF~V~G~~~s----FSYqP--lCdfA~-kiRPlVI~laii~A 491 (502)
T PF05616_consen 435 TDNVTFSPDNIFPTSGVCPAPKTFSVFGRQYS----FSYQP--LCDFAE-KIRPLVIALAIIMA 491 (502)
T ss_pred ccccccccccccCCCCCCCCCcEEEEcceEEE----EehhH--HHHHHH-HHhHHHHHHHHHHH
Confidence 55667777889999999 99999999999998 99999 999999 99999998765443
No 2
>PF05616 Neisseria_TspB: Neisseria meningitidis TspB protein; InterPro: IPR008708 This family consists mainly of Neisseria meningitidis TspB virulence factor proteins.
Probab=98.09 E-value=1.2e-05 Score=85.90 Aligned_cols=20 Identities=30% Similarity=0.164 Sum_probs=16.1
Q ss_pred ccchhhHHHHhhcccccccc
Q psy11148 3 ILAPIQMQILATNLQTKRQI 22 (703)
Q Consensus 3 ilapiqmqilatnl~TK~QI 22 (703)
-|.-.||++||...+-|+.+
T Consensus 169 ~lm~~qme~~a~~~we~~~~ 188 (502)
T PF05616_consen 169 QLMESQMERLARPFWEKLKE 188 (502)
T ss_pred HHHHHHHHHhhhhHHHHHhc
Confidence 36678999999999887764
No 3
>PHA03247 large tegument protein UL36; Provisional
Probab=81.02 E-value=90 Score=41.05 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=7.2
Q ss_pred CCCCCCCCCCCC
Q psy11148 453 FPEQPCPPGELE 464 (703)
Q Consensus 453 fpeqpcppgele 464 (703)
-+++|||++...
T Consensus 2913 ~p~Pp~P~p~~p 2924 (3151)
T PHA03247 2913 APPPPQPQPQPP 2924 (3151)
T ss_pred CCCCCCCCCCCC
Confidence 445667766655
No 4
>PHA03247 large tegument protein UL36; Provisional
Probab=76.71 E-value=1.7e+02 Score=38.83 Aligned_cols=9 Identities=44% Similarity=0.368 Sum_probs=4.2
Q ss_pred CCCCCCCcc
Q psy11148 607 NSNPDSSSD 615 (703)
Q Consensus 607 nsnpdsssd 615 (703)
+++.|++++
T Consensus 3040 ~~~~~~~~~ 3048 (3151)
T PHA03247 3040 DSLFDSDSE 3048 (3151)
T ss_pred ccccccccc
Confidence 444555443
No 5
>KOG0307|consensus
Probab=59.10 E-value=4.1e+02 Score=32.44 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=16.0
Q ss_pred ccCCCCCCceeeccccccceeee
Q psy11148 80 VKADPPASATVTTSNTTNQAITI 102 (703)
Q Consensus 80 ~~A~P~AS~~~~~~~T~~Q~~T~ 102 (703)
+++++.-.+..++...-.|.+.-
T Consensus 710 ~~~~~~~~~~~t~~~~~~qP~~~ 732 (1049)
T KOG0307|consen 710 VGAAPTPKQPTTSSIGVTQPQCY 732 (1049)
T ss_pred cccCCCCCCCCCCCCCcCCCccc
Confidence 66777777777777776777655
No 6
>KOG1924|consensus
Probab=58.42 E-value=83 Score=37.51 Aligned_cols=19 Identities=16% Similarity=0.330 Sum_probs=8.8
Q ss_pred CCccchhHHHHHHHHHhhh
Q psy11148 493 SDATSSSIDAIIDQIWDMR 511 (703)
Q Consensus 493 sdatsssidaiidqiwdmr 511 (703)
.|+--..+++.+.||-++.
T Consensus 896 ad~ikK~~~~m~~~ik~Le 914 (1102)
T KOG1924|consen 896 ADEIKKNLQQMENQIKKLE 914 (1102)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444455555554443
No 7
>KOG1924|consensus
Probab=43.93 E-value=1.6e+02 Score=35.39 Aligned_cols=6 Identities=17% Similarity=0.423 Sum_probs=2.4
Q ss_pred ecCCCC
Q psy11148 331 REKSPD 336 (703)
Q Consensus 331 r~~~P~ 336 (703)
++|+|+
T Consensus 739 ik~lPe 744 (1102)
T KOG1924|consen 739 IKHLPE 744 (1102)
T ss_pred HHhCCC
Confidence 334443
No 8
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=20.30 E-value=2.2e+02 Score=28.83 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=30.2
Q ss_pred chhhccchhhhhccCCCCCCccccccccccchhhcccc
Q psy11148 362 RFFSTNFKKLLQLVPRIPPGTVLPYKHVQTRETRTQSR 399 (703)
Q Consensus 362 eF~st~~R~LllL~~R~~~~~V~~~~~V~T~Etrtqsr 399 (703)
++|...+++||.-+-.---++|++||.-|+-.|-|-.-
T Consensus 57 ~vy~~~~~p~v~~~~~G~n~ti~aYGqTGSGKTyTm~G 94 (337)
T cd01373 57 DVFQSVGKPLVEDCLSGYNGSIFAYGQTGSGKTYTMMG 94 (337)
T ss_pred HHHHHHHHHHHHHHhCCCceeEEEeCCCCCCceEEecC
Confidence 45665778888777777789999999999988877644
No 9
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=17.79 E-value=2.1e+02 Score=29.00 Aligned_cols=39 Identities=13% Similarity=0.046 Sum_probs=31.0
Q ss_pred ccchhhccchhhhhccCCCCCCccccccccccchhhccc
Q psy11148 360 KCRFFSTNFKKLLQLVPRIPPGTVLPYKHVQTRETRTQS 398 (703)
Q Consensus 360 ~CeF~st~~R~LllL~~R~~~~~V~~~~~V~T~Etrtqs 398 (703)
--++|....++||.-+-.---++|++||.-|+..|-|-.
T Consensus 69 q~~vf~~~~~p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~ 107 (356)
T cd01365 69 QEDVFEDLGRELLDHAFEGYNVCLFAYGQTGSGKSYTMM 107 (356)
T ss_pred HHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCCeEEec
Confidence 346666677888876666678999999999999988765
No 10
>KOG0307|consensus
Probab=17.71 E-value=1.9e+03 Score=27.21 Aligned_cols=117 Identities=14% Similarity=0.173 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy11148 142 TNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPS 221 (703)
Q Consensus 142 ~~~D~~PS~~~daNPsPnPD~npsPnPDaNPsPnPDanPspnPd~nPs~NpD~~Ps~nPD~nPs~NPD~~Ps~nPdpNPs 221 (703)
+.+.++++..+....+.++-..+.|-+.+-+...+-+-....+-.+|..-+...|-+-+.--++....+...+-|...=+
T Consensus 786 p~p~p~~~~~p~~~s~~~p~~~stP~~~~~~~~P~~~~~~~~~~~~~~~~~~S~p~~~~pv~sgs~~P~~~~~~p~~~~~ 865 (1049)
T KOG0307|consen 786 PSPAPQPSYTPAPQSNARPNSASTPTPPAFSFTPPPSSGAADQYSQPPAAPPSFPYAPNPVTSGSVNPAPYGPGPPGSWN 865 (1049)
T ss_pred CCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCCCCCcccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCccc
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy11148 222 TNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDA 258 (703)
Q Consensus 222 pNPDpnPspnPDpnPn~NpD~sPNtNPDpNPNpNPDp 258 (703)
--|-.+.+.+..+-|.+-+-.-+.+.|..+|+.++..
T Consensus 866 ~~p~~~g~~~~~~iP~~~~P~a~~~~p~~~P~~~~~s 902 (1049)
T KOG0307|consen 866 QPPALQGSYRKPKIPPTVMPPAPITSPNGGPSQNPQS 902 (1049)
T ss_pred CCCcccCCCCCCCCCcccCCCccccCCCCCCCCCccc
Done!