Query psy11148
Match_columns 703
No_of_seqs 16 out of 18
Neff 1.5
Searched_HMMs 29240
Date Fri Aug 16 19:14:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11148.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11148hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2izy_A CAMP-dependent protein 10.2 64 0.0022 24.8 0.2 18 356-373 25-42 (54)
2 3nas_A Beta-PGM, beta-phosphog 8.0 1.1E+02 0.0037 25.1 0.7 19 402-420 215-233 (233)
3 1s3a_A NADH-ubiquinone oxidore 7.3 1.2E+02 0.004 25.1 0.7 39 406-444 34-72 (102)
4 4dyw_A MUTT/nudix family prote 6.7 2E+02 0.0069 23.4 1.7 31 414-444 2-32 (157)
5 1pd3_A Nonstructural protein N 6.1 1.7E+02 0.0057 23.8 0.9 14 397-410 1-14 (58)
6 3e96_A Dihydrodipicolinate syn 5.5 1.6E+02 0.0055 28.1 0.6 52 367-420 263-316 (316)
7 3r8n_G 30S ribosomal protein S 5.4 1.5E+02 0.0051 26.9 0.3 60 356-416 56-115 (151)
8 3s9d_B Interferon alpha/beta r 5.1 3.9E+02 0.013 24.3 2.9 37 327-365 161-198 (199)
9 2omo_A DUF176; structural geno 4.9 1.1E+02 0.0037 25.3 -0.9 67 353-424 30-96 (124)
10 3jyg_A Uncharacterized protein 4.9 90 0.0031 28.9 -1.5 47 358-420 142-188 (188)
No 1
>2izy_A CAMP-dependent protein kinase regulatory subunit II; D/D, RII, PKA, acetylation, transferase, CAMP- binding, phosphorylation, nucleotide-binding; 2.2A {Mus musculus} SCOP: a.31.1.1 PDB: 1l6e_A 1r2a_A 2drn_A 2h9r_A
Probab=10.19 E-value=64 Score=24.78 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=11.8
Q ss_pred CCccccchhhccchhhhh
Q psy11148 356 EPENKCRFFSTNFKKLLQ 373 (703)
Q Consensus 356 ePen~CeF~st~~R~Lll 373 (703)
.|++...|+..-|.+|+.
T Consensus 25 qP~Di~~Faa~YF~~L~~ 42 (54)
T 2izy_A 25 QPPDLVDFAVEYFTRLRE 42 (54)
T ss_dssp CCSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 466677777766666655
No 2
>3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics, protein structure initiative, NEW research center for structural genomics; 3.00A {Bacillus subtilis}
Probab=8.00 E-value=1.1e+02 Score=25.07 Aligned_cols=19 Identities=16% Similarity=0.120 Sum_probs=5.9
Q ss_pred hhhhhHHhhhhccccccce
Q psy11148 402 RWRNTAARKKLESHFRDYH 420 (703)
Q Consensus 402 rwrntaar~~~E~H~~D~H 420 (703)
+|-+...++..||||+|-|
T Consensus 215 ~~~~~~~~~~~~~~~~~~~ 233 (233)
T 3nas_A 215 EEWEQYRIRESEGHHHHHH 233 (233)
T ss_dssp HHHHHHHHTC---------
T ss_pred HHHHHHHhhhcccccccCC
Confidence 3445566778999999876
No 3
>1s3a_A NADH-ubiquinone oxidoreductase B8 subunit; CI-B8, ndufa2, complex I; NMR {Homo sapiens} SCOP: c.47.1.22
Probab=7.35 E-value=1.2e+02 Score=25.06 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=34.0
Q ss_pred hHHhhhhccccccceeeccccccccccccCCCcceeeee
Q psy11148 406 TAARKKLESHFRDYHFRMFSTPISVKEREGKKPMVRSLV 444 (703)
Q Consensus 406 taar~~~E~H~~D~H~~~~~~P~~i~~~~~~~PMVR~Lv 444 (703)
..+|+-++.|.-++.+.--+.++.|.++.+..|.|++-.
T Consensus 34 ~G~R~Fl~~~l~~~k~~NP~v~i~v~~~~~~~P~i~a~Y 72 (102)
T 1s3a_A 34 QGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARY 72 (102)
T ss_dssp HHHHHHHHHTHHHHHHHSTTCCEEEECCCSSSCEEEEEE
T ss_pred hhHHHHHHHhhHHHHHHCCCceEEEEECCCCCCEEEEEE
Confidence 467888999999999999999999999999999887653
No 4
>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}
Probab=6.67 E-value=2e+02 Score=23.40 Aligned_cols=31 Identities=10% Similarity=0.033 Sum_probs=2.7
Q ss_pred cccccceeeccccccccccccCCCcceeeee
Q psy11148 414 SHFRDYHFRMFSTPISVKEREGKKPMVRSLV 444 (703)
Q Consensus 414 ~H~~D~H~~~~~~P~~i~~~~~~~PMVR~Lv 444 (703)
.||-|||.+.-..+..=-..|.+++..|--|
T Consensus 2 ~~~~~~~~~~~~~~~~~p~~m~~~~~~~~~v 32 (157)
T 4dyw_A 2 AHHHHHHMGTLEAQTQGPGSMQHTEQPRVGC 32 (157)
T ss_dssp ------------------------CCCEEEE
T ss_pred CcccccccceeeccCCCCCCCCCCCCceeEE
Confidence 3788999876555544334444444333333
No 5
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=6.07 E-value=1.7e+02 Score=23.82 Aligned_cols=14 Identities=43% Similarity=0.930 Sum_probs=7.3
Q ss_pred ccccchhhhhHHhh
Q psy11148 397 QSRNARWRNTAARK 410 (703)
Q Consensus 397 qsrnarwrntaar~ 410 (703)
|+||+.||.....|
T Consensus 1 q~rn~kwReqL~qK 14 (58)
T 1pd3_A 1 QNRNGKWREQLGQK 14 (58)
T ss_dssp ----CHHHHHHHHH
T ss_pred CCcccHHHHHHHHH
Confidence 78999999766544
No 6
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=5.50 E-value=1.6e+02 Score=28.14 Aligned_cols=52 Identities=17% Similarity=0.270 Sum_probs=17.9
Q ss_pred cchhhhhccCCCCCCccccccccccchhhcccccc--hhhhhHHhhhhccccccce
Q psy11148 367 NFKKLLQLVPRIPPGTVLPYKHVQTRETRTQSRNA--RWRNTAARKKLESHFRDYH 420 (703)
Q Consensus 367 ~~R~LllL~~R~~~~~V~~~~~V~T~Etrtqsrna--rwrntaar~~~E~H~~D~H 420 (703)
-+|-+|.+.|......-+||.++.. |.+.+-|.+ +| .-..-.|-||||..-|
T Consensus 263 ~~K~al~~~G~~~g~~R~Pl~~l~~-~~~~~l~~~l~~~-~l~~~~~~~~~~~~~~ 316 (316)
T 3e96_A 263 VIKEAMEMLRQNAGVTRAPVNELSN-EDKQLVTELLSSW-KLLQPTKGEGHHHHHH 316 (316)
T ss_dssp HHHHHHHHTTCCCBBCCTTCCCCCH-HHHHHHHHHHHHT-TC--------------
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCH-HHHHHHHHHHHHc-CCCCCCCCCCcccCCC
Confidence 3566666777665444566766543 333222211 11 1223346788886544
No 7
>3r8n_G 30S ribosomal protein S7; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_G* 3j18_G 3oaq_G 3ofa_G 3ofx_G 3ofo_G 3r8o_G 4gd1_G 4gd2_G 3sfs_G* 3ofp_G 3fih_G* 2wwl_G 3oar_G 3ofb_G 3ofy_G 4a2i_G 2gy9_G 2gyb_G
Probab=5.41 E-value=1.5e+02 Score=26.85 Aligned_cols=60 Identities=20% Similarity=0.255 Sum_probs=46.8
Q ss_pred CCccccchhhccchhhhhccCCCCCCccccccccccchhhcccccchhhhhHHhhhhcccc
Q psy11148 356 EPENKCRFFSTNFKKLLQLVPRIPPGTVLPYKHVQTRETRTQSRNARWRNTAARKKLESHF 416 (703)
Q Consensus 356 ePen~CeF~st~~R~LllL~~R~~~~~V~~~~~V~T~Etrtqsrnarwrntaar~~~E~H~ 416 (703)
.|-..-+-+..++++++.+-.|--.|++. .-||.-++.|.+.---||--.++|++.+..+
T Consensus 56 nPl~vl~~Ai~Nv~P~~evks~rvGG~ty-qvPv~v~~~Rr~~lAirWii~~ar~r~~k~m 115 (151)
T 3r8n_G 56 SELEAFEVALENVRPTVEVKSRRVGGSTY-QVPVEVRPVRRNALAMRWIVEAARKRGDKSM 115 (151)
T ss_dssp CSHHHHHHHHHHHCCSEEECCCCCSSCCC-CCEEECCHHHHHHHHHHHHHHHHHTCCSSCH
T ss_pred CHHHHHHHHHHhcCCCeEEEEEeeCCEEE-EEecccCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 34334445667888899888888888776 6789999999999999999999999765443
No 8
>3s9d_B Interferon alpha/beta receptor 2; human, type I interferons, IFNA2, ifnar2, SUB-complex of the interferon signaling complex; 2.00A {Homo sapiens} PDB: 1n6u_A 1n6v_A 2hym_A 2ksx_B 2kz1_B 2lag_B 3se4_C* 3se3_C* 3s8w_A*
Probab=5.12 E-value=3.9e+02 Score=24.32 Aligned_cols=37 Identities=24% Similarity=0.409 Sum_probs=20.7
Q ss_pred EEeeecCCCCC-ceeEEecCCCccccccCCCCccccchhh
Q psy11148 327 TIVKREKSPDR-DCVQVKADPPVSKTTSDKEPENKCRFFS 365 (703)
Q Consensus 327 sIglr~~~P~~-~~VqV~g~PlvS~~~sd~ePen~CeF~s 365 (703)
+.+++.-.|++ |||+|...+...+. +-+-| -.|-|++
T Consensus 161 ~~vi~~L~P~T~YCv~V~~~~~~~~~-s~~S~-~~Ci~~~ 198 (199)
T 3s9d_B 161 TYIIDKLIPNTNYCVSVYLEHSDEQA-VIKSP-LKCTLLP 198 (199)
T ss_dssp EEEECSCCSSCEEEEEEEEEC---CC-CCCCC-CEEEECC
T ss_pred eEEEeccCCCCcEEEEEEEEeCCCCC-CCCCC-CeeEEeC
Confidence 44555544888 99999976644433 22322 2787653
No 9
>2omo_A DUF176; structural genomics, APC6266, PSI-2, protein structure initi midwest center for structural genomics, MCSG, oxidoreductas; HET: MSE; 1.83A {Nitrosomonas europaea} SCOP: d.58.4.11
Probab=4.94 E-value=1.1e+02 Score=25.29 Aligned_cols=67 Identities=7% Similarity=0.050 Sum_probs=39.6
Q ss_pred cCCCCccccchhhccchhhhhccCCCCCCccccccccccchhhcccccchhhhhHHhhhhccccccceeecc
Q psy11148 353 SDKEPENKCRFFSTNFKKLLQLVPRIPPGTVLPYKHVQTRETRTQSRNARWRNTAARKKLESHFRDYHFRMF 424 (703)
Q Consensus 353 sd~ePen~CeF~st~~R~LllL~~R~~~~~V~~~~~V~T~Etrtqsrnarwrntaar~~~E~H~~D~H~~~~ 424 (703)
+.-.|+..-+|.. .|+.++... |--+|.+.-.-+....+-..----.+|++.+|. +.|..-=||.-+
T Consensus 30 ~~vkpg~~~~f~~-~l~~~~~~s-r~EpGcl~y~l~~~~~dp~~f~~~E~W~d~eal---~aH~~s~~~~~~ 96 (124)
T 2omo_A 30 ASVKTDKTEAFKE-ATRMNHEQS-IREPGNMRFDILQSADDPTRFVLYEAYKTRKDA---AAHKETAHYLTW 96 (124)
T ss_dssp EEBCGGGHHHHHH-HHHHHHHHH-TTSTTEEEEEEEEESSCTTEEEEEEEESSHHHH---HHHTTSHHHHHH
T ss_pred EEECcCcHHHHHH-HHHHHHHHH-hcCCCcEEEEEEEcCCCCCEEEEEEEECCHHHH---HHHhCCHHHHHH
Confidence 3445654555655 788888776 778887654333333333334446789998774 456555555444
No 10
>3jyg_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; 1.95A {Wolinella succinogenes}
Probab=4.92 E-value=90 Score=28.86 Aligned_cols=47 Identities=23% Similarity=0.230 Sum_probs=0.0
Q ss_pred ccccchhhccchhhhhccCCCCCCccccccccccchhhcccccchhhhhHHhhhhccccccce
Q psy11148 358 ENKCRFFSTNFKKLLQLVPRIPPGTVLPYKHVQTRETRTQSRNARWRNTAARKKLESHFRDYH 420 (703)
Q Consensus 358 en~CeF~st~~R~LllL~~R~~~~~V~~~~~V~T~Etrtqsrnarwrntaar~~~E~H~~D~H 420 (703)
||+|+++...|+..|. +.-+-+-.|.-.||-++. |.|+| ||||..-|
T Consensus 142 EnlA~~i~~~L~~~L~-------~~~v~l~~V~v~ETp~~~--a~~~~-------~~~~~~~~ 188 (188)
T 3jyg_A 142 ESIASWLLELLRSRIQ-------PLGVKVSSVEFLETPKSR--ARVYN-------EGHHHHHH 188 (188)
T ss_dssp HHHHHHHHHHHHHHCG-------GGTCEEEEEEEEEETTEE--EEEEE-------C-------
T ss_pred HHHHHHHHHHHHHhhc-------ccCceEEEEEEEECCCcE--EEEeC-------CcccccCC
Done!