Query psy11148
Match_columns 703
No_of_seqs 16 out of 18
Neff 1.5
Searched_HMMs 13730
Date Fri Aug 16 19:15:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11148.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11148hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3c96a2 d.16.1.2 (A:183-293) M 10.6 14 0.001 28.8 -1.6 35 391-425 59-93 (111)
2 d1s3aa1 c.47.1.22 (A:15-99) NA 8.6 45 0.0033 25.0 0.7 38 406-443 17-54 (85)
3 d1tmka_ c.37.1.1 (A:) Thymidyl 8.0 1.1E+02 0.0078 24.9 2.9 29 494-522 181-210 (214)
4 d1v9va1 a.29.10.1 (A:8-108) Mi 6.4 58 0.0042 26.8 0.3 17 363-379 84-100 (101)
5 d2ebsa2 b.69.13.1 (A:431-786) 6.3 62 0.0045 28.7 0.5 19 570-588 7-25 (356)
6 d1husa_ a.75.1.1 (A:) Ribosoma 5.8 38 0.0028 27.7 -1.2 54 363-417 55-108 (139)
7 d1gu7a1 b.35.1.2 (A:23-160,A:3 4.6 78 0.0057 24.3 -0.0 28 415-442 46-77 (175)
8 d1h1oa1 a.3.1.4 (A:12-93) Cyto 4.1 1.8E+02 0.013 20.0 1.6 13 505-517 63-75 (82)
9 d3lada2 c.3.1.5 (A:159-277) Di 4.1 1.1E+02 0.0077 23.0 0.4 21 338-370 23-43 (119)
10 d1goja_ c.37.1.9 (A:) Kinesin 4.0 1.1E+02 0.0082 26.9 0.5 38 362-399 62-99 (354)
No 1
>d3c96a2 d.16.1.2 (A:183-293) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}
Probab=10.57 E-value=14 Score=28.77 Aligned_cols=35 Identities=14% Similarity=0.370 Sum_probs=26.1
Q ss_pred cchhhcccccchhhhhHHhhhhccccccceeeccc
Q psy11148 391 TRETRTQSRNARWRNTAARKKLESHFRDYHFRMFS 425 (703)
Q Consensus 391 T~Etrtqsrnarwrntaar~~~E~H~~D~H~~~~~ 425 (703)
+.+....-....|...+.++.+..||+|.|+-...
T Consensus 59 ~~~~~~~~~~e~W~~~g~~~el~~~F~~W~~~~~d 93 (111)
T d3c96a2 59 SAAVGQLDNEADWNRDGRLEDVLPFFADWDLGWFD 93 (111)
T ss_dssp HHHHCCCCSSCCTTCBCCHHHHHHHHTTCCBTTBC
T ss_pred cccccCCCCCCCcccccCHHHHHHHHcCCCCchhh
Confidence 33444445566899999999999999999975433
No 2
>d1s3aa1 c.47.1.22 (A:15-99) NADH-ubiquinone oxidoreductase b8 subunit, CI-B8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.65 E-value=45 Score=24.99 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=34.0
Q ss_pred hHHhhhhccccccceeeccccccccccccCCCcceeee
Q psy11148 406 TAARKKLESHFRDYHFRMFSTPISVKEREGKKPMVRSL 443 (703)
Q Consensus 406 taar~~~E~H~~D~H~~~~~~P~~i~~~~~~~PMVR~L 443 (703)
..+|+-++.|.-++.+.--+.++.|.++++..|-|++-
T Consensus 17 ~G~R~Fi~~~l~~~~~~NP~v~i~v~~~~~~~P~l~a~ 54 (85)
T d1s3aa1 17 QGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWAR 54 (85)
T ss_dssp HHHHHHHHHTHHHHHHHSTTCCEEEECCCSSSCEEEEE
T ss_pred HHHHHHHHHhHHHHHHHCCCceEEEEEcCCCCCEEEEE
Confidence 46889999999999999999999999999999988764
No 3
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.97 E-value=1.1e+02 Score=24.92 Aligned_cols=29 Identities=28% Similarity=0.523 Sum_probs=23.1
Q ss_pred CccchhHHHHHHHHHh-hhhhcccCCCCCC
Q psy11148 494 DATSSSIDAIIDQIWD-MRKFLNTNSNPDS 522 (703)
Q Consensus 494 datsssidaiidqiwd-mrkflntnsnpds 522 (703)
|++..+++.|-.+||. +.++|+..-+.|.
T Consensus 181 D~s~~~~eev~~~I~~~v~~~l~~~~~~~~ 210 (214)
T d1tmka_ 181 DVTNKGIQEVEALIWQIVEPVLSTHIDHDK 210 (214)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHHSCCCTTC
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHhhcCccc
Confidence 4566689999999998 6889998877654
No 4
>d1v9va1 a.29.10.1 (A:8-108) Microtubule-associated serine/threonine-protein kinase 3, MAST3 (KIAA0561) {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.38 E-value=58 Score=26.77 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=14.4
Q ss_pred hhhccchhhhhccCCCC
Q psy11148 363 FFSTNFKKLLQLVPRIP 379 (703)
Q Consensus 363 F~st~~R~LllL~~R~~ 379 (703)
|....+|+||+.++|||
T Consensus 84 ~i~~lvkkLL~IIsRPA 100 (101)
T d1v9va1 84 FIVQLVRKLLIIISRPA 100 (101)
T ss_dssp HHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHhhcccCC
Confidence 55568999999999987
No 5
>d2ebsa2 b.69.13.1 (A:431-786) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}
Probab=6.29 E-value=62 Score=28.75 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=16.5
Q ss_pred cccccceeEEEeeccCCCC
Q psy11148 570 SKAKKIEEVVVLNTISPAK 588 (703)
Q Consensus 570 skakkieevvvlntispak 588 (703)
.+++-|||.+||..|+|-.
T Consensus 7 ~~~~g~ee~~~~~l~spp~ 25 (356)
T d2ebsa2 7 LQIDGIEENAILSLRSPKS 25 (356)
T ss_dssp ECCTTCBCCBEEEEECCSS
T ss_pred EccCCeehhheeeeEcCCC
Confidence 4788999999999999943
No 6
>d1husa_ a.75.1.1 (A:) Ribosomal protein S7 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=5.80 E-value=38 Score=27.71 Aligned_cols=54 Identities=24% Similarity=0.233 Sum_probs=44.1
Q ss_pred hhhccchhhhhccCCCCCCccccccccccchhhcccccchhhhhHHhhhhccccc
Q psy11148 363 FFSTNFKKLLQLVPRIPPGTVLPYKHVQTRETRTQSRNARWRNTAARKKLESHFR 417 (703)
Q Consensus 363 F~st~~R~LllL~~R~~~~~V~~~~~V~T~Etrtqsrnarwrntaar~~~E~H~~ 417 (703)
-|..++++++.+-.|.-.|+... -||...+.|.++.--||--.+||++.+.+|.
T Consensus 55 ~Ai~n~~P~~ev~~~r~GG~~yq-vPv~i~~~rr~~lAirwi~~~a~~r~~~~~~ 108 (139)
T d1husa_ 55 QALKNVMPVLEVRARRVGGANYQ-VPVEVRPDRRVSLGLRWLVQYARLRNEKTME 108 (139)
T ss_dssp HHHHHHCCSEEEECCEETTEECC-EEEECCHHHHHHHHHHHHHHHHHHSCSSSHH
T ss_pred HHHHhhhhhhheeeeeeCccceE-eeEeeChHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 34557888888888888888775 4999999999999999999999988665543
No 7
>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}
Probab=4.60 E-value=78 Score=24.27 Aligned_cols=28 Identities=7% Similarity=-0.192 Sum_probs=17.4
Q ss_pred ccccceeeccccccc----cccccCCCcceee
Q psy11148 415 HFRDYHFRMFSTPIS----VKEREGKKPMVRS 442 (703)
Q Consensus 415 H~~D~H~~~~~~P~~----i~~~~~~~PMVR~ 442 (703)
+++|+|.+.|.++.. .+....+.|++.|
T Consensus 46 ~~~D~~~~~G~~~~~~~~~~~~~~~~~~~v~G 77 (175)
T d1gu7a1 46 NPSDINQIQGVYPSKPAKTTGFGTTEPAAPCG 77 (175)
T ss_dssp CHHHHHHHHTCSSCCCCCBSTTCCSSCBEECC
T ss_pred CcceeEEEecCcccccccccccCCCCCCcccc
Confidence 677888888877663 3333445666644
No 8
>d1h1oa1 a.3.1.4 (A:12-93) Cytochrome c4 {Thiobacillus ferrooxidans [TaxId: 920]}
Probab=4.05 E-value=1.8e+02 Score=19.98 Aligned_cols=13 Identities=15% Similarity=0.419 Sum_probs=7.3
Q ss_pred HHHHhhhhhcccC
Q psy11148 505 DQIWDMRKFLNTN 517 (703)
Q Consensus 505 dqiwdmrkflntn 517 (703)
+|||++-.||..-
T Consensus 63 ~eI~~la~Yi~sl 75 (82)
T d1h1oa1 63 AKITALADYFNAQ 75 (82)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 3566666666544
No 9
>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}
Probab=4.05 E-value=1.1e+02 Score=23.02 Aligned_cols=21 Identities=10% Similarity=-0.001 Sum_probs=17.5
Q ss_pred ceeEEecCCCccccccCCCCccccchhhccchh
Q psy11148 338 DCVQVKADPPVSKTTSDKEPENKCRFFSTNFKK 370 (703)
Q Consensus 338 ~~VqV~g~PlvS~~~sd~ePen~CeF~st~~R~ 370 (703)
+.|.++|+=++ +|||+. .|+.
T Consensus 23 ~~i~IiG~G~i-----------g~E~A~-~l~~ 43 (119)
T d3lada2 23 GKLGVIGAGVI-----------GLELGS-VWAR 43 (119)
T ss_dssp SEEEEECCSHH-----------HHHHHH-HHHH
T ss_pred CeEEEECCChH-----------HHHHHH-HHHH
Confidence 77999999999 999999 5544
No 10
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Probab=3.97 E-value=1.1e+02 Score=26.95 Aligned_cols=38 Identities=18% Similarity=0.193 Sum_probs=30.7
Q ss_pred chhhccchhhhhccCCCCCCccccccccccchhhcccc
Q psy11148 362 RFFSTNFKKLLQLVPRIPPGTVLPYKHVQTRETRTQSR 399 (703)
Q Consensus 362 eF~st~~R~LllL~~R~~~~~V~~~~~V~T~Etrtqsr 399 (703)
++|...+++||.-+..---+++++||+-|+..|-|-..
T Consensus 62 ~vy~~~~~plv~~~l~G~n~ti~aYG~tgSGKT~Tm~G 99 (354)
T d1goja_ 62 DIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMG 99 (354)
T ss_dssp HHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHHTB
T ss_pred HHHHHHHHHHHHHhhccCceeEEecccCCCCcceeeec
Confidence 56666789999866666778999999999999988644
Done!