RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11148
(703 letters)
>gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated.
Length = 619
Score = 52.1 bits (125), Expect = 9e-07
Identities = 44/267 (16%), Positives = 87/267 (32%), Gaps = 9/267 (3%)
Query: 84 PPASATVTTSNTTNQAITIVKHANPSTNTDASPSTNT-DANPSTNTDASPSTNTDANPST 142
P A A ++T + + S + + S T++ D + + N + S N D ST
Sbjct: 23 PTAYADDPQKDSTAKTTSHDSKK--SNDDETSKDTSSKDTDKADNNNTSNQDNNDKKFST 80
Query: 143 NTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDA 202
++ +N + + N + D T N
Sbjct: 81 IDSSTSDSNNIIDFIYKNLPQTNINQLLTKNKYDDNYSLTTLIQNLFNLNSDISDYEQPR 140
Query: 203 NPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPST 262
N +T+ S + ++ T + + +PS+N ++N +
Sbjct: 141 NSEKSTNDSNKNS-----DSSIKNDTDTQSSKQDKADNQKAPSSNNTKPSTSNKQPNSPK 195
Query: 263 NTDANPSTNTDANLSNKLADKKTNISTNSSSPIVVTSEPSIVSKDVVNVTKPTVTTSNTT 322
T N +N+ + K ++ S S + S S+D K + S
Sbjct: 196 PTQPN-QSNSQPASDDTANQKSSSKDNQSMSDSALDSILDQYSEDAKKTQKDYASQSKKD 254
Query: 323 NQAITIVKREKSPDRDCVQVKADPPVS 349
+ K + P +D ++ K+ P S
Sbjct: 255 KTETSNTKNPQLPTQDELKHKSKPAQS 281
Score = 46.7 bits (111), Expect = 4e-05
Identities = 43/258 (16%), Positives = 83/258 (32%), Gaps = 5/258 (1%)
Query: 36 TSEPSIVSKDVVNVTKPTVTTSNTTNQAITIVKREKSPDRDCVQVKADPPASATVTTSNT 95
TS K + T ++N + + + K D S T N
Sbjct: 68 TSNQDNNDKKFSTIDSSTSDSNNIIDFIYKNLPQTNINQLLTKN-KYDDNYSLTTLIQNL 126
Query: 96 TNQAITIVKHANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDAN 155
N I + P + ++ +N N ++ T + + +PS+N
Sbjct: 127 FNLNSDISDYEQPRNSEKSTNDSNK--NSDSSIKNDTDTQSSKQDKADNQKAPSSNNTKP 184
Query: 156 PSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTN 215
++N + T N S + AS T + S + + + D+ ++ + T
Sbjct: 185 STSNKQPNSPKPTQPNQSNSQPASDDTANQKSSSKDNQSMSDSALDSILDQYSEDAKKTQ 244
Query: 216 TDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDAN 275
D + D + T+ NP T + S + +NT + T +
Sbjct: 245 KDYASQSKKDKT-ETSNTKNPQLPTQDELKHKSKPAQSFE-NDVNQSNTRSTSLFETGPS 302
Query: 276 LSNKLADKKTNISTNSSS 293
LSN N+ + +
Sbjct: 303 LSNNDDSGSFNVVDSKDT 320
Score = 44.0 bits (104), Expect = 2e-04
Identities = 34/247 (13%), Positives = 69/247 (27%), Gaps = 11/247 (4%)
Query: 50 TKPTVTTSNTTNQAITIVKREKSPDRDCVQVKADPPASATVTTSNTTNQAITIVKHANPS 109
T PT + + S + + D +S ++ N + S
Sbjct: 21 TSPTAYADDPQKDSTAKTTSHDSKKSNDDETSKDT-SSKDTDKADNNNTSNQDNNDKKFS 79
Query: 110 TNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTD 169
T ++ +N + + N + D T N
Sbjct: 80 TIDSSTSDSNNIIDFIYKNLPQTNINQLLTKNKYDDNYSLTTLIQNLFNLNSDISDYEQP 139
Query: 170 ANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPS 229
N +T+ S + ++ T + + +PS+N ++N +
Sbjct: 140 RNSEKSTNDSNKNS-----DSSIKNDTDTQSSKQDKADNQKAPSSNNTKPSTSNKQPNSP 194
Query: 230 TNTDANPSTNTDASPSTNTDANPST---NTDASPSTNTDANPSTNTDANLSNKLADKKTN 286
T P+ + S +T S+ N S S + DA + K ++
Sbjct: 195 KPT--QPNQSNSQPASDDTANQKSSSKDNQSMSDSALDSILDQYSEDAKKTQKDYASQSK 252
Query: 287 ISTNSSS 293
+S
Sbjct: 253 KDKTETS 259
Score = 34.4 bits (79), Expect = 0.25
Identities = 21/192 (10%), Positives = 53/192 (27%), Gaps = 11/192 (5%)
Query: 168 TDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDAS 227
D + + + +N + + +++ D + + N + S N D ST ++
Sbjct: 28 DDPQKDSTAKTTSHDSKKSN--DDETSKDTSSKDTDKADNNNTSNQDNNDKKFSTIDSST 85
Query: 228 PSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDANLSNKLADKKTNI 287
+N + + N + D T N +
Sbjct: 86 SDSNNIIDFIYKNLPQTNINQLLTKNKYDDNYSLTTLIQNLFNLNSDISDYEQPRNSEKS 145
Query: 288 STNSSSPIVVTSEPSIVSKDVVNVTKPTVTTSNTTNQAITIVKREKSPDRDCVQVKADPP 347
+ +S+ + + ++ ++ N P Q + P
Sbjct: 146 TNDSNKNSDSSIKNDTDTQSSKQDKADNQKAPSSNNTK---------PSTSNKQPNSPKP 196
Query: 348 VSKTTSDKEPEN 359
S+ +P +
Sbjct: 197 TQPNQSNSQPAS 208
Score = 29.4 bits (66), Expect = 7.3
Identities = 39/236 (16%), Positives = 83/236 (35%), Gaps = 10/236 (4%)
Query: 470 SSSDPIESLSIPSSSDPSSTSSNSDATSSSIDAII-------DQIWDMRKFLNTNSNPDS 522
+D + + ++ ST +S + S++I I + + K ++ +
Sbjct: 61 DKADNNNTSNQDNNDKKFSTIDSSTSDSNNIIDFIYKNLPQTNINQLLTKNKYDDNYSLT 120
Query: 523 SSDEIEILNTDSKSKPRSPEVITISSTPSHSKSKSPN-EVTTVNKTKKSKAKKIEEVVVL 581
+ + S P S+ S+ S S T +K+ KA +
Sbjct: 121 TLIQNLFNLNSDISDYEQPRNSEKSTNDSNKNSDSSIKNDTDTQSSKQDKADNQKAPSSN 180
Query: 582 NTISPAKPVADITYENTISNKFLNTNSNPDSSSDEVEILNTDSKSKPRSPEVITISSTPS 641
NT + + T N+ + ++ D+++ + + S S ++ S +
Sbjct: 181 NTKPSTSNKQPNSPKPTQPNQSNSQPASDDTANQKSSSKDNQSMSDSALDSILDQYSEDA 240
Query: 642 NSKSKSPNEVTTVNKTKKSKAKKIEEVVVLKTISPAKPVADITYENTISNVNTTST 697
K + +KT+ S K + + +KP +EN ++ NT ST
Sbjct: 241 KKTQKDYASQSKKDKTETSNTKNPQLPTQDELKHKSKPAQS--FENDVNQSNTRST 294
>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional.
Length = 331
Score = 45.4 bits (108), Expect = 6e-05
Identities = 11/96 (11%), Positives = 25/96 (26%)
Query: 118 TNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTD 177
+ + P + + T A + ++ T A + A + +
Sbjct: 157 NSGQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQAN 216
Query: 178 ASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPS 213
+ D + TD + A P+
Sbjct: 217 VDTAATPAPAAPATPDGAAPLPTDQAGVSTPAADPN 252
Score = 45.4 bits (108), Expect = 6e-05
Identities = 11/96 (11%), Positives = 25/96 (26%)
Query: 134 TNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTD 193
+ + P + + T A + ++ T A + A + +
Sbjct: 157 NSGQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQAN 216
Query: 194 ASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPS 229
+ D + TD + A P+
Sbjct: 217 VDTAATPAPAAPATPDGAAPLPTDQAGVSTPAADPN 252
Score = 45.4 bits (108), Expect = 6e-05
Identities = 11/96 (11%), Positives = 25/96 (26%)
Query: 150 TNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTD 209
+ + P + + T A + ++ T A + A + +
Sbjct: 157 NSGQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQAN 216
Query: 210 ASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPS 245
+ D + TD + A P+
Sbjct: 217 VDTAATPAPAAPATPDGAAPLPTDQAGVSTPAADPN 252
Score = 45.4 bits (108), Expect = 6e-05
Identities = 11/96 (11%), Positives = 25/96 (26%)
Query: 166 TNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTD 225
+ + P + + T A + ++ T A + A + +
Sbjct: 157 NSGQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQAN 216
Query: 226 ASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPS 261
+ D + TD + A P+
Sbjct: 217 VDTAATPAPAAPATPDGAAPLPTDQAGVSTPAADPN 252
Score = 44.2 bits (105), Expect = 1e-04
Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 1/89 (1%)
Query: 110 TNTDASPSTNTDANPSTNTDASP-STNTDANPSTNTDASPSTNTDANPSTNTDASPSTNT 168
+T + T P+ D +P ++ T A + A + + +
Sbjct: 164 LDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATP 223
Query: 169 DANPSTNTDASPSTNTDANPSTNTDASPS 197
D + TD + A P+
Sbjct: 224 APAAPATPDGAAPLPTDQAGVSTPAADPN 252
Score = 42.7 bits (101), Expect = 5e-04
Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 3/99 (3%)
Query: 157 STNTDASPSTNTDANPSTNTDASPSTNTDANP--STNTDASPSTNTDANPSTNTDASPST 214
S N+ S +T T +P+ D P S + + +P N +PS
Sbjct: 155 SQNSGQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPS- 213
Query: 215 NTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPS 253
+ + + + D TD + + A+P+
Sbjct: 214 QANVDTAATPAPAAPATPDGAAPLPTDQAGVSTPAADPN 252
Score = 41.6 bits (98), Expect = 0.001
Identities = 19/105 (18%), Positives = 33/105 (31%), Gaps = 4/105 (3%)
Query: 178 ASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNT--DASPSTNTDAN 235
A S N+ + +T + T P+ D +P+ + +T P N
Sbjct: 152 AELSQNSGQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVA 211
Query: 236 PSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDANLSNKL 280
PS + + D + TD + A+ N L
Sbjct: 212 PS-QANVDTAATPAPAAPATPDGAAPLPTDQAGVSTPAAD-PNAL 254
Score = 41.2 bits (97), Expect = 0.001
Identities = 18/108 (16%), Positives = 33/108 (30%), Gaps = 3/108 (2%)
Query: 74 DRDCVQVKADPPASATVTTSNTTNQAITIVKHANPSTNTDASPSTNTDANPSTNTDASPS 133
D+ ++ + S + TS TT+ A T A T S + P+ D +
Sbjct: 148 DQSSAELSQNSGQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQN 207
Query: 134 TNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPS 181
+ + + D + TD + A P+
Sbjct: 208 AVV---APSQANVDTAATPAPAAPATPDGAAPLPTDQAGVSTPAADPN 252
Score = 36.9 bits (86), Expect = 0.029
Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 1/101 (0%)
Query: 194 ASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPS 253
A S N+ + +T + T P+ D +P TN+ A
Sbjct: 152 AELSQNSGQSVPLDTSTTTDPATTPAPAAPVDTTP-TNSQTPAVATAPAPAVDPQQNAVV 210
Query: 254 TNTDASPSTNTDANPSTNTDANLSNKLADKKTNISTNSSSP 294
+ A+ T P+ + + L + +ST ++ P
Sbjct: 211 APSQANVDTAATPAPAAPATPDGAAPLPTDQAGVSTPAADP 251
Score = 36.9 bits (86), Expect = 0.030
Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 7/96 (7%)
Query: 54 VTTSNTTNQAITIVKREKSPDRDCVQVKADPPASATVTTSNTTNQAITIVKHANPSTNTD 113
+ TS TT+ A T + D + PA AT Q +V + +
Sbjct: 164 LDTSTTTDPATT---PAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVV----APSQAN 216
Query: 114 ASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPS 149
+ D + TD + A P+
Sbjct: 217 VDTAATPAPAAPATPDGAAPLPTDQAGVSTPAADPN 252
>gnl|CDD|183558 PRK12495, PRK12495, hypothetical protein; Provisional.
Length = 226
Score = 43.3 bits (102), Expect = 2e-04
Identities = 18/110 (16%), Positives = 39/110 (35%), Gaps = 1/110 (0%)
Query: 111 NTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDA 170
+ A A + +DA + D + +A + + +++T A+ TD
Sbjct: 71 DGAAGDDAGDGAEATAPSDAGSQASPDDDAQPAAEAEAADQSAPPEASSTSATDEAATDP 130
Query: 171 NPSTNTDASPSTNTDANPSTNTD-ASPSTNTDANPSTNTDASPSTNTDAN 219
+ P+ + A P+T + SP + T ++P +
Sbjct: 131 PATAAARDGPTPDPTAQPATPDERRSPRQRPPVSGEPPTPSTPDAHVAGT 180
Score = 43.3 bits (102), Expect = 2e-04
Identities = 18/110 (16%), Positives = 39/110 (35%), Gaps = 1/110 (0%)
Query: 127 NTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDA 186
+ A A + +DA + D + +A + + +++T A+ TD
Sbjct: 71 DGAAGDDAGDGAEATAPSDAGSQASPDDDAQPAAEAEAADQSAPPEASSTSATDEAATDP 130
Query: 187 NPSTNTDASPSTNTDANPSTNTD-ASPSTNTDANPSTNTDASPSTNTDAN 235
+ P+ + A P+T + SP + T ++P +
Sbjct: 131 PATAAARDGPTPDPTAQPATPDERRSPRQRPPVSGEPPTPSTPDAHVAGT 180
Score = 43.3 bits (102), Expect = 2e-04
Identities = 18/110 (16%), Positives = 39/110 (35%), Gaps = 1/110 (0%)
Query: 143 NTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDA 202
+ A A + +DA + D + +A + + +++T A+ TD
Sbjct: 71 DGAAGDDAGDGAEATAPSDAGSQASPDDDAQPAAEAEAADQSAPPEASSTSATDEAATDP 130
Query: 203 NPSTNTDASPSTNTDANPSTNTD-ASPSTNTDANPSTNTDASPSTNTDAN 251
+ P+ + A P+T + SP + T ++P +
Sbjct: 131 PATAAARDGPTPDPTAQPATPDERRSPRQRPPVSGEPPTPSTPDAHVAGT 180
Score = 43.3 bits (102), Expect = 2e-04
Identities = 18/110 (16%), Positives = 39/110 (35%), Gaps = 1/110 (0%)
Query: 159 NTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDA 218
+ A A + +DA + D + +A + + +++T A+ TD
Sbjct: 71 DGAAGDDAGDGAEATAPSDAGSQASPDDDAQPAAEAEAADQSAPPEASSTSATDEAATDP 130
Query: 219 NPSTNTDASPSTNTDANPSTNTD-ASPSTNTDANPSTNTDASPSTNTDAN 267
+ P+ + A P+T + SP + T ++P +
Sbjct: 131 PATAAARDGPTPDPTAQPATPDERRSPRQRPPVSGEPPTPSTPDAHVAGT 180
Score = 42.9 bits (101), Expect = 2e-04
Identities = 21/124 (16%), Positives = 42/124 (33%), Gaps = 3/124 (2%)
Query: 156 PSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTN 215
P+ + + +A+ ++ + S + DA P+ +A + + S
Sbjct: 62 PTCQQPVTEDGAAGDDAGDGAEATAPSDAGSQASPDDDAQPAAEAEAADQSAPPEASS-- 119
Query: 216 TDANPSTNTDASPSTNTDANPSTNTDASPSTNTD-ANPSTNTDASPSTNTDANPSTNTDA 274
T A TD + P+ + A P+T + +P S T + P +
Sbjct: 120 TSATDEAATDPPATAAARDGPTPDPTAQPATPDERRSPRQRPPVSGEPPTPSTPDAHVAG 179
Query: 275 NLSN 278
L
Sbjct: 180 TLQA 183
Score = 39.5 bits (92), Expect = 0.003
Identities = 17/99 (17%), Positives = 37/99 (37%), Gaps = 1/99 (1%)
Query: 106 ANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPS 165
A + +DA + D + +A + + +++T A+ TD + P+
Sbjct: 82 AEATAPSDAGSQASPDDDAQPAAEAEAADQSAPPEASSTSATDEAATDPPATAAARDGPT 141
Query: 166 TNTDANPSTNTD-ASPSTNTDANPSTNTDASPSTNTDAN 203
+ A P+T + SP + T ++P +
Sbjct: 142 PDPTAQPATPDERRSPRQRPPVSGEPPTPSTPDAHVAGT 180
Score = 38.7 bits (90), Expect = 0.005
Identities = 16/104 (15%), Positives = 35/104 (33%)
Query: 191 NTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDA 250
+ A A + +DA + D + +A + + +++T A+ TD
Sbjct: 71 DGAAGDDAGDGAEATAPSDAGSQASPDDDAQPAAEAEAADQSAPPEASSTSATDEAATDP 130
Query: 251 NPSTNTDASPSTNTDANPSTNTDANLSNKLADKKTNISTNSSSP 294
+ P+ + A P+T + + T S+
Sbjct: 131 PATAAARDGPTPDPTAQPATPDERRSPRQRPPVSGEPPTPSTPD 174
>gnl|CDD|237555 PRK13914, PRK13914, invasion associated secreted endopeptidase;
Provisional.
Length = 481
Score = 41.7 bits (97), Expect = 0.001
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
Query: 109 STNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNT 168
+ NT + P+ A+P + N +T T T T + +
Sbjct: 246 TANTATPKAEVKTEAPAAEKQAAPVVKENTNTNTATTEKKETTTQQQTAPKAPTEAAKPA 305
Query: 169 DANPSTNTDASPST-NTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDAS 227
A PSTNT+A+ + NT+ N + ++PS NT+ N ++NT+ + +TN + S N S
Sbjct: 306 PA-PSTNTNANKTNTNTNTNTNNTNTSTPSKNTNTNTNSNTNTNSNTNANQGSSNNNSNS 364
Query: 228 PST 230
++
Sbjct: 365 SAS 367
Score = 41.7 bits (97), Expect = 0.001
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
Query: 141 STNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNT 200
+ NT + P+ A+P + N +T T T T + +
Sbjct: 246 TANTATPKAEVKTEAPAAEKQAAPVVKENTNTNTATTEKKETTTQQQTAPKAPTEAAKPA 305
Query: 201 DANPSTNTDASPST-NTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDAS 259
A PSTNT+A+ + NT+ N + ++PS NT+ N ++NT+ + +TN + S N S
Sbjct: 306 PA-PSTNTNANKTNTNTNTNTNNTNTSTPSKNTNTNTNSNTNTNSNTNANQGSSNNNSNS 364
Query: 260 PST 262
++
Sbjct: 365 SAS 367
Score = 39.0 bits (90), Expect = 0.009
Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
Query: 173 STNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNT 232
+ NT + P+ A+P + N +T T T T + +
Sbjct: 246 TANTATPKAEVKTEAPAAEKQAAPVVKENTNTNTATTEKKETTTQQQTAPKAPTEAAKPA 305
Query: 233 DANPSTNTDASPST-NTDANPSTNTDASPSTNTDANPSTNTDANLSNKLADKKTNISTNS 291
A PSTNT+A+ + NT+ N + ++PS NT+ N ++NT+ N + +N ++NS
Sbjct: 306 PA-PSTNTNANKTNTNTNTNTNNTNTSTPSKNTNTNTNSNTNTNSNTNANQGSSNNNSNS 364
Query: 292 SSPIVV 297
S+ ++
Sbjct: 365 SASAII 370
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 41.7 bits (98), Expect = 0.002
Identities = 32/204 (15%), Positives = 69/204 (33%), Gaps = 11/204 (5%)
Query: 68 KREKSPDRDCVQVKADPPASATVTTSNTTNQAITIVKHANPSTNTDASPSTNTDANPSTN 127
+ SP AS S+ A+ S A ++
Sbjct: 139 RPVGSPGPPPAASPPAAGASPAAVASDA----------ASSRQAALPLSSPEETARAPSS 188
Query: 128 TDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTD-A 186
A P +T ++ S+ A+ S+ A + D ++++D+S S ++
Sbjct: 189 PPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCG 248
Query: 187 NPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPST 246
N P P+ +AS + P + +S +PS ++ S
Sbjct: 249 WGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPA 308
Query: 247 NTDANPSTNTDASPSTNTDANPST 270
+ S+++ +S +++ + S+
Sbjct: 309 PSSPRASSSSSSSRESSSSSTSSS 332
Score = 32.8 bits (75), Expect = 0.75
Identities = 32/202 (15%), Positives = 70/202 (34%), Gaps = 8/202 (3%)
Query: 104 KHANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDAS 163
+ P+ + + A+ S A ++ A P +T ++
Sbjct: 149 AASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPR 208
Query: 164 PSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTN 223
S+ A+ S+ A + D ++++D+S S S+ P N P
Sbjct: 209 RSSPISASASSPAPAPGRSAADDAGASSSDSSSS------ESSGCGWGP-ENECPLPRPA 261
Query: 224 TDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDANLSNKLADK 283
P+ +A+ + P + ++ SPS ++ + + S+ +
Sbjct: 262 PITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSS- 320
Query: 284 KTNISTNSSSPIVVTSEPSIVS 305
S++S+S +S + VS
Sbjct: 321 SRESSSSSTSSSSESSRGAAVS 342
Score = 32.1 bits (73), Expect = 1.4
Identities = 38/192 (19%), Positives = 66/192 (34%), Gaps = 6/192 (3%)
Query: 92 TSNTTNQAITIVKHANPSTNTDASPSTNTDAN-PSTNTDASPSTNTDANPST--NTDASP 148
+ T P T P T AN + S ST A+P+ +
Sbjct: 51 AAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPG 110
Query: 149 STNTDANPSTNTDAS--PSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTD-ANPS 205
++ D P T AS PS D + SP A+P + + +D A+
Sbjct: 111 PSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSR 170
Query: 206 TNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTD 265
S A ++ A P +T ++ S+ A+ S+ A + D
Sbjct: 171 QAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAAD 230
Query: 266 ANPSTNTDANLS 277
++++D++ S
Sbjct: 231 DAGASSSDSSSS 242
>gnl|CDD|218658 pfam05616, Neisseria_TspB, Neisseria meningitidis TspB protein.
This family consists of several Neisseria meningitidis
TspB virulence factor proteins.
Length = 502
Score = 39.6 bits (92), Expect = 0.005
Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 11/135 (8%)
Query: 149 STNTDANPSTNTDASP----STNTDANPSTNTDASPSTNTDANP-----STNTDASPSTN 199
S DANP A+ S + P T + P T+ + NP + D+ +T
Sbjct: 249 SLKVDANPDKYIQATGYPGYSEKVEVAPGTKVNMGPVTDRNGNPVQVVATFGRDSQGNTT 308
Query: 200 TDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDAS 259
D D +P + + SP+ N NP+ + N + +P N DA+
Sbjct: 309 VDVQVIPRPDLTPGSAEAPEAQPLPEVSPAENPANNPNPRENPGTRPNPEPDPDLNPDAN 368
Query: 260 PSTNTDANPSTNTDA 274
P +TD P T D+
Sbjct: 369 P--DTDGQPGTRPDS 381
Score = 38.8 bits (90), Expect = 0.010
Identities = 38/143 (26%), Positives = 54/143 (37%), Gaps = 19/143 (13%)
Query: 117 STNTDANPSTNTDASP----STNTDANPSTNTDASPSTNTDANP-----STNTDASPSTN 167
S DANP A+ S + P T + P T+ + NP + D+ +T
Sbjct: 249 SLKVDANPDKYIQATGYPGYSEKVEVAPGTKVNMGPVTDRNGNPVQVVATFGRDSQGNTT 308
Query: 168 TDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDAS 227
D D +P + + SP+ N NP N +P T + P
Sbjct: 309 VDVQVIPRPDLTPGSAEAPEAQPLPEVSPAENPANNP--NPRENPGTRPNPEPD------ 360
Query: 228 PSTNTDANPSTNTDASPSTNTDA 250
P N DANP +TD P T D+
Sbjct: 361 PDLNPDANP--DTDGQPGTRPDS 381
Score = 38.8 bits (90), Expect = 0.010
Identities = 38/143 (26%), Positives = 54/143 (37%), Gaps = 19/143 (13%)
Query: 133 STNTDANPSTNTDASP----STNTDANPSTNTDASPSTNTDANP-----STNTDASPSTN 183
S DANP A+ S + P T + P T+ + NP + D+ +T
Sbjct: 249 SLKVDANPDKYIQATGYPGYSEKVEVAPGTKVNMGPVTDRNGNPVQVVATFGRDSQGNTT 308
Query: 184 TDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDAS 243
D D +P + + SP+ N NP N +P T + P
Sbjct: 309 VDVQVIPRPDLTPGSAEAPEAQPLPEVSPAENPANNP--NPRENPGTRPNPEPD------ 360
Query: 244 PSTNTDANPSTNTDASPSTNTDA 266
P N DANP +TD P T D+
Sbjct: 361 PDLNPDANP--DTDGQPGTRPDS 381
Score = 37.3 bits (86), Expect = 0.030
Identities = 26/117 (22%), Positives = 45/117 (38%), Gaps = 5/117 (4%)
Query: 117 STNTDANPSTNTDASPSTNTDANP-----STNTDASPSTNTDANPSTNTDASPSTNTDAN 171
S + P T + P T+ + NP + D+ +T D D +P +
Sbjct: 269 SEKVEVAPGTKVNMGPVTDRNGNPVQVVATFGRDSQGNTTVDVQVIPRPDLTPGSAEAPE 328
Query: 172 PSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASP 228
+ SP+ N NP+ + N + +P N DA+P T+ ++ A P
Sbjct: 329 AQPLPEVSPAENPANNPNPRENPGTRPNPEPDPDLNPDANPDTDGQPGTRPDSPAVP 385
Score = 35.3 bits (81), Expect = 0.10
Identities = 29/120 (24%), Positives = 45/120 (37%), Gaps = 9/120 (7%)
Query: 165 STNTDANPSTNTDASP----STNTDANPSTNTDASPSTNTDANP-----STNTDASPSTN 215
S DANP A+ S + P T + P T+ + NP + D+ +T
Sbjct: 249 SLKVDANPDKYIQATGYPGYSEKVEVAPGTKVNMGPVTDRNGNPVQVVATFGRDSQGNTT 308
Query: 216 TDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDAN 275
D D +P + + SP+ N NP+ + N + +P N DAN
Sbjct: 309 VDVQVIPRPDLTPGSAEAPEAQPLPEVSPAENPANNPNPRENPGTRPNPEPDPDLNPDAN 368
Score = 31.5 bits (71), Expect = 1.8
Identities = 19/84 (22%), Positives = 33/84 (39%)
Query: 113 DASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANP 172
D+ +T D D +P + + SP+ N NP+ + N + +P
Sbjct: 302 DSQGNTTVDVQVIPRPDLTPGSAEAPEAQPLPEVSPAENPANNPNPRENPGTRPNPEPDP 361
Query: 173 STNTDASPSTNTDANPSTNTDASP 196
N DA+P T+ ++ A P
Sbjct: 362 DLNPDANPDTDGQPGTRPDSPAVP 385
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 38.8 bits (91), Expect = 0.009
Identities = 13/79 (16%), Positives = 19/79 (24%), Gaps = 1/79 (1%)
Query: 82 ADPPASATVTTSNTTNQAITIVKHANPSTNTDASPSTNTDANPSTNTDASPSTNTDAN-P 140
S S N P+ ++P T A + A S
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420
Query: 141 STNTDASPSTNTDANPSTN 159
T +P N P +
Sbjct: 421 PTEPSPTPPANAANAPPSL 439
Score = 32.2 bits (74), Expect = 0.98
Identities = 14/87 (16%), Positives = 23/87 (26%), Gaps = 9/87 (10%)
Query: 121 DANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASP 180
A S +AS N P+ + +P + A + PS +
Sbjct: 362 SAFISEIANASAPANPTPAPNPSPPPAPIQPS---------APKTKQAATTPSPPPAKAS 412
Query: 181 STNTDANPSTNTDASPSTNTDANPSTN 207
T +P N P +
Sbjct: 413 PPIPVPAEPTEPSPTPPANAANAPPSL 439
Score = 32.2 bits (74), Expect = 0.98
Identities = 14/87 (16%), Positives = 23/87 (26%), Gaps = 9/87 (10%)
Query: 137 DANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASP 196
A S +AS N P+ + +P + A + PS +
Sbjct: 362 SAFISEIANASAPANPTPAPNPSPPPAPIQPS---------APKTKQAATTPSPPPAKAS 412
Query: 197 STNTDANPSTNTDASPSTNTDANPSTN 223
T +P N P +
Sbjct: 413 PPIPVPAEPTEPSPTPPANAANAPPSL 439
Score = 32.2 bits (74), Expect = 0.98
Identities = 14/87 (16%), Positives = 23/87 (26%), Gaps = 9/87 (10%)
Query: 153 DANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASP 212
A S +AS N P+ + +P + A + PS +
Sbjct: 362 SAFISEIANASAPANPTPAPNPSPPPAPIQPS---------APKTKQAATTPSPPPAKAS 412
Query: 213 STNTDANPSTNTDASPSTNTDANPSTN 239
T +P N P +
Sbjct: 413 PPIPVPAEPTEPSPTPPANAANAPPSL 439
Score = 32.2 bits (74), Expect = 0.98
Identities = 14/87 (16%), Positives = 23/87 (26%), Gaps = 9/87 (10%)
Query: 169 DANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASP 228
A S +AS N P+ + +P + A + PS +
Sbjct: 362 SAFISEIANASAPANPTPAPNPSPPPAPIQPS---------APKTKQAATTPSPPPAKAS 412
Query: 229 STNTDANPSTNTDASPSTNTDANPSTN 255
T +P N P +
Sbjct: 413 PPIPVPAEPTEPSPTPPANAANAPPSL 439
Score = 32.2 bits (74), Expect = 0.98
Identities = 14/87 (16%), Positives = 23/87 (26%), Gaps = 9/87 (10%)
Query: 185 DANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASP 244
A S +AS N P+ + +P + A + PS +
Sbjct: 362 SAFISEIANASAPANPTPAPNPSPPPAPIQPS---------APKTKQAATTPSPPPAKAS 412
Query: 245 STNTDANPSTNTDASPSTNTDANPSTN 271
T +P N P +
Sbjct: 413 PPIPVPAEPTEPSPTPPANAANAPPSL 439
Score = 31.9 bits (73), Expect = 1.3
Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 1/79 (1%)
Query: 113 DASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANP 172
A S +A+ N +P+ + P + A + PS +
Sbjct: 362 SAFISEIANASAPANPTPAPNPSPPPAPIQPS-APKTKQAATTPSPPPAKASPPIPVPAE 420
Query: 173 STNTDASPSTNTDANPSTN 191
T +P N P +
Sbjct: 421 PTEPSPTPPANAANAPPSL 439
>gnl|CDD|185641 PTZ00462, PTZ00462, Serine-repeat antigen protein; Provisional.
Length = 1004
Score = 38.9 bits (90), Expect = 0.010
Identities = 17/85 (20%), Positives = 34/85 (40%)
Query: 117 STNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNT 176
+ + + N + T + + N D SP N DAN + A P ++ AN
Sbjct: 22 CRGEEDDDNGNIGGGQAGGTGGDNAGNIDGSPIGNLDANIHASFGADPKESSGANLPGKK 81
Query: 177 DASPSTNTDANPSTNTDASPSTNTD 201
+ + +N+D+ S++ +
Sbjct: 82 EKKKKEIRGHDIMSNSDSQNSSSIE 106
Score = 38.9 bits (90), Expect = 0.010
Identities = 17/85 (20%), Positives = 34/85 (40%)
Query: 133 STNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNT 192
+ + + N + T + + N D SP N DAN + A P ++ AN
Sbjct: 22 CRGEEDDDNGNIGGGQAGGTGGDNAGNIDGSPIGNLDANIHASFGADPKESSGANLPGKK 81
Query: 193 DASPSTNTDANPSTNTDASPSTNTD 217
+ + +N+D+ S++ +
Sbjct: 82 EKKKKEIRGHDIMSNSDSQNSSSIE 106
Score = 38.9 bits (90), Expect = 0.010
Identities = 17/85 (20%), Positives = 34/85 (40%)
Query: 149 STNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNT 208
+ + + N + T + + N D SP N DAN + A P ++ AN
Sbjct: 22 CRGEEDDDNGNIGGGQAGGTGGDNAGNIDGSPIGNLDANIHASFGADPKESSGANLPGKK 81
Query: 209 DASPSTNTDANPSTNTDASPSTNTD 233
+ + +N+D+ S++ +
Sbjct: 82 EKKKKEIRGHDIMSNSDSQNSSSIE 106
Score = 38.9 bits (90), Expect = 0.010
Identities = 17/85 (20%), Positives = 34/85 (40%)
Query: 165 STNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNT 224
+ + + N + T + + N D SP N DAN + A P ++ AN
Sbjct: 22 CRGEEDDDNGNIGGGQAGGTGGDNAGNIDGSPIGNLDANIHASFGADPKESSGANLPGKK 81
Query: 225 DASPSTNTDANPSTNTDASPSTNTD 249
+ + +N+D+ S++ +
Sbjct: 82 EKKKKEIRGHDIMSNSDSQNSSSIE 106
Score = 38.9 bits (90), Expect = 0.010
Identities = 17/85 (20%), Positives = 34/85 (40%)
Query: 181 STNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNT 240
+ + + N + T + + N D SP N DAN + A P ++ AN
Sbjct: 22 CRGEEDDDNGNIGGGQAGGTGGDNAGNIDGSPIGNLDANIHASFGADPKESSGANLPGKK 81
Query: 241 DASPSTNTDANPSTNTDASPSTNTD 265
+ + +N+D+ S++ +
Sbjct: 82 EKKKKEIRGHDIMSNSDSQNSSSIE 106
Score = 38.9 bits (90), Expect = 0.011
Identities = 17/75 (22%), Positives = 31/75 (41%)
Query: 111 NTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDA 170
N + T + + N D SP N DAN + A P ++ AN +
Sbjct: 32 NIGGGQAGGTGGDNAGNIDGSPIGNLDANIHASFGADPKESSGANLPGKKEKKKKEIRGH 91
Query: 171 NPSTNTDASPSTNTD 185
+ +N+D+ S++ +
Sbjct: 92 DIMSNSDSQNSSSIE 106
Score = 37.7 bits (87), Expect = 0.026
Identities = 17/90 (18%), Positives = 34/90 (37%)
Query: 197 STNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNT 256
+ + + N + T + + N D SP N DAN + A P ++ AN
Sbjct: 22 CRGEEDDDNGNIGGGQAGGTGGDNAGNIDGSPIGNLDANIHASFGADPKESSGANLPGKK 81
Query: 257 DASPSTNTDANPSTNTDANLSNKLADKKTN 286
+ + +N+D+ S+ + +
Sbjct: 82 EKKKKEIRGHDIMSNSDSQNSSSIEKQDNI 111
Score = 37.3 bits (86), Expect = 0.033
Identities = 21/100 (21%), Positives = 35/100 (35%)
Query: 221 STNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDANLSNKL 280
+ + N + T + N D +P N DA+ + A+P ++ ANL K
Sbjct: 22 CRGEEDDDNGNIGGGQAGGTGGDNAGNIDGSPIGNLDANIHASFGADPKESSGANLPGKK 81
Query: 281 ADKKTNISTNSSSPIVVTSEPSIVSKDVVNVTKPTVTTSN 320
KK I + + S + K K + N
Sbjct: 82 EKKKKEIRGHDIMSNSDSQNSSSIEKQDNIQIKSALLKDN 121
Score = 35.4 bits (81), Expect = 0.11
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 1/78 (1%)
Query: 92 TSNTTNQAITIVKHANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTN 151
N N N D SP N DAN + A P ++ AN +
Sbjct: 30 NGNIGGGQAGGTGGDNAG-NIDGSPIGNLDANIHASFGADPKESSGANLPGKKEKKKKEI 88
Query: 152 TDANPSTNTDASPSTNTD 169
+ +N+D+ S++ +
Sbjct: 89 RGHDIMSNSDSQNSSSIE 106
Score = 34.7 bits (79), Expect = 0.22
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 213 STNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDAN-PSTN 271
+ + + N + T + + N D SP N DAN + A P ++ AN P
Sbjct: 22 CRGEEDDDNGNIGGGQAGGTGGDNAGNIDGSPIGNLDANIHASFGADPKESSGANLPGKK 81
Query: 272 TDANLSNKLADKKTN-ISTNSSS 293
+ D +N S NSSS
Sbjct: 82 EKKKKEIRGHDIMSNSDSQNSSS 104
Score = 34.3 bits (78), Expect = 0.31
Identities = 14/92 (15%), Positives = 35/92 (38%)
Query: 189 STNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNT 248
+ + N + T + N D +P N DA+ + A+P ++ A+
Sbjct: 22 CRGEEDDDNGNIGGGQAGGTGGDNAGNIDGSPIGNLDANIHASFGADPKESSGANLPGKK 81
Query: 249 DANPSTNTDASPSTNTDANPSTNTDANLSNKL 280
+ +N+D+ S++ + + ++
Sbjct: 82 EKKKKEIRGHDIMSNSDSQNSSSIEKQDNIQI 113
>gnl|CDD|227709 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange factor for
Rho/Rac/Cdc42-like GTPases [Signal transduction
mechanisms].
Length = 1175
Score = 38.7 bits (90), Expect = 0.012
Identities = 34/194 (17%), Positives = 70/194 (36%), Gaps = 13/194 (6%)
Query: 116 PSTNTDANPSTNTDASPSTNTDANPSTNTDASP-STNTDANPSTNTDASPSTNTDANPST 174
A P T++ ++ S+ + N + SP S + NPS+ S D +P
Sbjct: 83 FQRRNSAGPITHSPSATSSTSSLNSNDGDQFSPASDSLSFNPSSTQSRKDSGPGDGSPVQ 142
Query: 175 NTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDA 234
PS++T + + + + +P+ + + S +
Sbjct: 143 ------KRKNPLLPSSSTHGTHPPIVFTDNNGSHAGAPNARSRKEIPSLGSQSMQLPS-- 194
Query: 235 NPSTNTDASPS--TNTDANPSTNTDASPSTNT-DANPSTNTDANLSNKLADKKTNISTNS 291
P S S +N + PS ++ S+N+ + P ++T L ++ +++
Sbjct: 195 -PHFRQKFSSSDTSNGFSYPSIRKNSRHSSNSMPSFPHSSTAVLLKRHSGSSGASLISSN 253
Query: 292 SSPIVVTSEPSIVS 305
+P SE S
Sbjct: 254 ITPSSSNSEAMSTS 267
>gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide
2'-phosphodiesterase/3'-nucleotidase precursor protein;
Reviewed.
Length = 814
Score = 37.9 bits (88), Expect = 0.022
Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 2/83 (2%)
Query: 130 ASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPS 189
A T ST + + +DA + +P T A + +S + T S
Sbjct: 28 AEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTA--AEAPSSSETAETSDPTS 85
Query: 190 TNTDASPSTNTDANPSTNTDASP 212
TD + S P+ + P
Sbjct: 86 EATDTTTSEARTVTPAATETSKP 108
Score = 37.9 bits (88), Expect = 0.022
Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 2/83 (2%)
Query: 146 ASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPS 205
A T ST + + +DA + +P T A + +S + T S
Sbjct: 28 AEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTA--AEAPSSSETAETSDPTS 85
Query: 206 TNTDASPSTNTDANPSTNTDASP 228
TD + S P+ + P
Sbjct: 86 EATDTTTSEARTVTPAATETSKP 108
Score = 37.9 bits (88), Expect = 0.022
Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 2/83 (2%)
Query: 162 ASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPS 221
A T ST + + +DA + +P T A + +S + T S
Sbjct: 28 AEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTA--AEAPSSSETAETSDPTS 85
Query: 222 TNTDASPSTNTDANPSTNTDASP 244
TD + S P+ + P
Sbjct: 86 EATDTTTSEARTVTPAATETSKP 108
Score = 37.9 bits (88), Expect = 0.022
Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 2/83 (2%)
Query: 178 ASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPS 237
A T ST + + +DA + +P T A + +S + T S
Sbjct: 28 AEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTA--AEAPSSSETAETSDPTS 85
Query: 238 TNTDASPSTNTDANPSTNTDASP 260
TD + S P+ + P
Sbjct: 86 EATDTTTSEARTVTPAATETSKP 108
Score = 37.5 bits (87), Expect = 0.023
Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 13/108 (12%)
Query: 89 TVTTSNTTNQAITIVKHANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASP 148
T+ +N + A T + ST + +DA + NT+
Sbjct: 14 TLALLTASNP---KLAQAEEIVTTTPATSTEAEQTTPVESDA-------TEEADNTETPV 63
Query: 149 STNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASP 196
+ T + +S + T S TD + S P+ + P
Sbjct: 64 AATTA---AEAPSSSETAETSDPTSEATDTTTSEARTVTPAATETSKP 108
Score = 34.8 bits (80), Expect = 0.16
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Query: 226 ASPSTNTDANPSTNTDASPSTNTDA-NPSTNTDASPSTNTDA-NPSTNTDANLSNKLADK 283
A T ST + + +DA + NT+ + T A PS++ A S+ ++
Sbjct: 28 AEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSSSETAETSDPTSEA 87
Query: 284 KTNISTNSSSPIVVTSEPS 302
++ + + +E S
Sbjct: 88 TDTTTSEARTVTPAATETS 106
Score = 34.8 bits (80), Expect = 0.18
Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 4/81 (4%)
Query: 194 ASPSTNTDANPSTNTDASPSTNTDA-NPSTNTDASPSTNTDANPSTNTDASPSTNTDANP 252
A T ST + + +DA + NT+ + T + +S + T
Sbjct: 28 AEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTA---AEAPSSSETAETSDPT 84
Query: 253 STNTDASPSTNTDANPSTNTD 273
S TD + S P+
Sbjct: 85 SEATDTTTSEARTVTPAATET 105
Score = 34.8 bits (80), Expect = 0.18
Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 2/85 (2%)
Query: 80 VKADPPASATVTTSNTTNQAITIVKHANPSTNTDASPSTNTDANPSTNTDASPSTNTDAN 139
+A+ + T TS Q + A + +P T A + +S + T
Sbjct: 26 AQAEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTA--AEAPSSSETAETSDP 83
Query: 140 PSTNTDASPSTNTDANPSTNTDASP 164
S TD + S P+ + P
Sbjct: 84 TSEATDTTTSEARTVTPAATETSKP 108
Score = 33.7 bits (77), Expect = 0.42
Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 2/91 (2%)
Query: 178 ASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPS 237
AS A T + ST + +DA+ + P T A + ++ +
Sbjct: 20 ASNPKLAQAEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTA--AEAPSSSET 77
Query: 238 TNTDASPSTNTDANPSTNTDASPSTNTDANP 268
T S TD S +P+ + P
Sbjct: 78 AETSDPTSEATDTTTSEARTVTPAATETSKP 108
Score = 32.9 bits (75), Expect = 0.63
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 114 ASPSTNTDANPSTNTDASPSTNTDANPSTNTDAS-PSTNTDANPSTNTDA-SPSTNTDAN 171
AS A T + ST + +DA+ + NT+ + T A +PS++ A
Sbjct: 20 ASNPKLAQAEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSSSETAE 79
Query: 172 PSTNTDASPSTNTDANPSTNTDASPST 198
S T + T T + A+ ++
Sbjct: 80 TSDPTSEATDTTTSEARTVTPAATETS 106
Score = 32.9 bits (75), Expect = 0.72
Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 14/97 (14%)
Query: 226 ASPSTNTDANPSTNTDASPSTNTDANPSTNTDAS-PSTNTDANPSTNTDANLSNKLADKK 284
AS A T + ST + +DA+ + NT+ + T A
Sbjct: 20 ASNPKLAQAEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTAA---------- 69
Query: 285 TNISTNSSSPIVVTSEPSIVSKDVVNVTKPTVTTSNT 321
SSS TS+P+ + D TVT + T
Sbjct: 70 ---EAPSSSETAETSDPTSEATDTTTSEARTVTPAAT 103
Score = 32.5 bits (74), Expect = 0.84
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
Query: 194 ASPSTNTDANPSTNTDASPSTNTDANPSTNTDAS-PSTNTDANPSTNTDA-SPSTNTDAN 251
AS A T + ST + +DA+ + NT+ + T A +PS++ A
Sbjct: 20 ASNPKLAQAEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSSSETAE 79
Query: 252 PSTNTDASPSTNTDANPSTNTDANLSNK 279
S T + T T + A ++K
Sbjct: 80 TSDPTSEATDTTTSEARTVTPAATETSK 107
Score = 32.5 bits (74), Expect = 1.0
Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 4/90 (4%)
Query: 210 ASPSTNTDANPSTNTDASPSTNTDANPSTNTDAS-PSTNTDANPSTNTDA---SPSTNTD 265
AS A T + ST + +DA+ + NT+ + T A S S +
Sbjct: 20 ASNPKLAQAEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSSSETAE 79
Query: 266 ANPSTNTDANLSNKLADKKTNISTNSSSPI 295
+ T+ + + A T +T +S P+
Sbjct: 80 TSDPTSEATDTTTSEARTVTPAATETSKPV 109
Score = 29.8 bits (67), Expect = 6.7
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
Query: 82 ADPPASATVTTSNTTNQAITIVKHANPSTNTDASPSTNTDANPSTNTDA-SPSTNTDANP 140
++P + TT T + P + + NT+ + T A +PS++ A
Sbjct: 21 SNPKLAQAEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSSSETAET 80
Query: 141 STNTDASPSTNTDANPSTNTDASPST 166
S T + T T + A+ ++
Sbjct: 81 SDPTSEATDTTTSEARTVTPAATETS 106
>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope
glycoprotein (BLLF1). This family consists of the BLLF1
viral late glycoprotein, also termed gp350/220. It is
the most abundantly expressed glycoprotein in the viral
envelope of the Herpesviruses and is the major antigen
responsible for stimulating the production of
neutralising antibodies in vivo.
Length = 830
Score = 37.8 bits (87), Expect = 0.023
Identities = 67/342 (19%), Positives = 113/342 (33%), Gaps = 19/342 (5%)
Query: 18 TKRQIFPPTLQVLSPIVVTSEPSIVSKDVVNVTKPTVTTSNTTNQAITIVKREKSPDRDC 77
TK IF TL + P T+ P+ S T PTV+T++ T+ T P+
Sbjct: 429 TKSVIFVYTLVHVEPHKTTAVPTTPSLPP-ASTGPTVSTADPTSGTPTGTTSSTLPE--- 484
Query: 78 VQVKADPPASATVTTSNTTNQAITIVKHANPSTNTDASPSTNTDANPSTNTDASPSTNTD 137
T TS TT+ T +A+ T + T + S
Sbjct: 485 ----------DTSPTSRTTSATPNATSPTPAVTTPNATSPTTQKTSD---TPNATSPTPI 531
Query: 138 ANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPS 197
T T SP T T + P+ + + N +T S + + +T + S
Sbjct: 532 VIGVTTTATSPPTGTTSVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGS 591
Query: 198 TNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTN--TDANPSTN 255
+ T P + + + +++ +T S N + T + PST + +P
Sbjct: 592 SPTSQQPGIPSSSHSTPRSNSTSTTPLLTSAHPTGGENITEETPSVPSTTHVSTLSPGPG 651
Query: 256 TDASPSTNTDANPSTNTDANLSNKLADKKTNISTNSSSPIVVTSEPSIVSKDVVNVTKPT 315
+ + N ST+ + +T+ S+P + V+ T
Sbjct: 652 PGTTSQVSGPGNSSTSRYPGEVHVTEGMPNPNATSPSAPSGQKTAVPTVTSTGGKANSTT 711
Query: 316 VTTSNTTNQAITIVKREKSPDRDCVQVKADPPVSKTTSDKEP 357
TS +T A T + R T+S P
Sbjct: 712 KETSGSTLMASTSPHTNEGAFRTTPYNATTYLPPSTSSKLRP 753
Score = 35.5 bits (81), Expect = 0.12
Identities = 50/273 (18%), Positives = 95/273 (34%), Gaps = 4/273 (1%)
Query: 89 TVTTSNTTNQAITIVKHANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASP 148
TV + + I + A +T T A +T + T P T A P
Sbjct: 393 TVANPVADAKTLIITRTATNATTT-THKVVFHKAPDTTKSVIFVYTLVHVEPHKTT-AVP 450
Query: 149 STNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNT 208
+T + ST S + T P+ T ++ +T T + +T+ +T
Sbjct: 451 TTPSLPPASTGPTVSTADPTSGTPTGTTSSTLPEDTSPTSRTTSATPNATSPTPAVTTPN 510
Query: 209 DASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANP 268
SP+T ++ T +P +T+ ++ +A T+ SP NT+
Sbjct: 511 ATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTTSVPNATSPQVTEESPVNNTNTPV 570
Query: 269 STNTDANLSNKLADKKTNISTNSSS--PIVVTSEPSIVSKDVVNVTKPTVTTSNTTNQAI 326
T+ + L++ + + ++ +S P + +S S + + T + T + I
Sbjct: 571 VTSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSSHSTPRSNSTSTTPLLTSAHPTGGENI 630
Query: 327 TIVKREKSPDRDCVQVKADPPVSKTTSDKEPEN 359
T + P T+ P N
Sbjct: 631 TEETPSVPSTTHVSTLSPGPGPGTTSQVSGPGN 663
Score = 34.8 bits (79), Expect = 0.19
Identities = 53/293 (18%), Positives = 97/293 (33%), Gaps = 26/293 (8%)
Query: 35 VTSEPSIVSKDVVNVTKPTVTTSNTTNQAITIVKREKSPDRDC--------VQVKADPPA 86
TS S + N T PT + + T K +P+ PP
Sbjct: 485 DTSPTSRTTSATPNATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPT 544
Query: 87 SATVTTSNTTNQAITIVKHANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDA 146
T + T+ Q N +T S + + +T + S+ T P + +
Sbjct: 545 GTTSVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSS 604
Query: 147 SPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDAN------PSTNTDASPSTNT 200
+ +++ +T S N + T + PST + P T + S N+
Sbjct: 605 HSTPRSNSTSTTPLLTSAHPTGGENITEETPSVPSTTHVSTLSPGPGPGTTSQVSGPGNS 664
Query: 201 DANP-------STNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPS 253
+ + +T+ A T T+T ++ T + + A+ S
Sbjct: 665 STSRYPGEVHVTEGMPNPNATSPSAPSGQKTAVPTVTSTGGKANSTTKETSGSTLMASTS 724
Query: 254 TNTDASPSTNTDANPSTNTDANLSNKLADKKTNIS-----TNSSSPIVVTSEP 301
+T+ T N +T + S+KL + T S ++ P+ T P
Sbjct: 725 PHTNEGAFRTTPYNATTYLPPSTSSKLRPRWTFTSPPVTTKQATVPVPPTQHP 777
Score = 34.8 bits (79), Expect = 0.19
Identities = 34/190 (17%), Positives = 69/190 (36%), Gaps = 4/190 (2%)
Query: 86 ASATVTTSNTTNQAITIVKHANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTD 145
A T + + + H + T S + + D + T T ST +
Sbjct: 425 APDTTKSVIFVYTLVHVEPHKTTAVPTTPSLPPASTGPTVSTADPTSGTPTGTTSSTLPE 484
Query: 146 ASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPS 205
+ T+ + + N + T N ++ T S +A T +T + P+
Sbjct: 485 DTSPTSRTTSATPNATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPT 544
Query: 206 TNTDASPSTN---TDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPST 262
T +T+ T+ +P NT+ T+ + T+ + T ++P++ PS+
Sbjct: 545 GTTSVPNATSPQVTEESPVNNTNTPVVTSAPSV-LTSAVTTGQHGTGSSPTSQQPGIPSS 603
Query: 263 NTDANPSTNT 272
+ S +T
Sbjct: 604 SHSTPRSNST 613
Score = 30.1 bits (67), Expect = 4.4
Identities = 51/321 (15%), Positives = 104/321 (32%), Gaps = 15/321 (4%)
Query: 5 APIQMQILATNLQTKRQIFPPTLQVLSPIVVTSEPSIVSKDVVNVTKPTVTTSNTTNQAI 64
P + + T PT+ P T + S + + + TTS T N
Sbjct: 442 EPHKTTAVPTTPSLPPASTGPTVSTADPTSGTPTGTTSSTLPEDTSPTSRTTSATPN--- 498
Query: 65 TIVKREKSPDRDCVQVKADPPASATVTTSNTTNQAITIVKHANPSTNTDASPSTNTDANP 124
+ + + T TS+T N +T + P+ T
Sbjct: 499 -------ATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTTSVPN 551
Query: 125 STN---TDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPS 181
+T+ T+ SP NT+ T+ S T+ T +SP++ PS+ + ++P
Sbjct: 552 ATSPQVTEESPVNNTNTPVVTSA-PSVLTSAVTTGQHGTGSSPTSQQPGIPSS-SHSTPR 609
Query: 182 TNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTD 241
+N+ + T A P+ + T + S + + +P + + N ST+
Sbjct: 610 SNSTSTTPLLTSAHPTGGENITEETPSVPSTTHVSTLSPGPGPGTTSQVSGPGNSSTSRY 669
Query: 242 ASPSTNTDANPSTNTDASPSTNTDANPSTNTDANLSNKLADKKTNISTNSSSPIVVTSEP 301
T+ P+ N + + + + + K + + +
Sbjct: 670 PGEVHVTEGMPNPNATSPSAPSGQKTAVPTVTSTGGKANSTTKETSGSTLMASTSPHTNE 729
Query: 302 SIVSKDVVNVTKPTVTTSNTT 322
N T ++++
Sbjct: 730 GAFRTTPYNATTYLPPSTSSK 750
>gnl|CDD|183756 PRK12799, motB, flagellar motor protein MotB; Reviewed.
Length = 421
Score = 36.6 bits (84), Expect = 0.039
Identities = 25/129 (19%), Positives = 50/129 (38%), Gaps = 4/129 (3%)
Query: 119 NTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDA 178
D + + A ++ S T +S + + A ++ +T T A+ + A
Sbjct: 292 QIDTHGTVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSA 351
Query: 179 SPSTNTDANPSTNT-DASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPS 237
+ P T A+ N P + T+ S+ + + N P+T+ A P+
Sbjct: 352 GVLPSDVTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTAN---GPTTSLPAAPA 408
Query: 238 TNTDASPST 246
+N SP++
Sbjct: 409 SNIPVSPTS 417
Score = 36.2 bits (83), Expect = 0.048
Identities = 25/128 (19%), Positives = 48/128 (37%), Gaps = 7/128 (5%)
Query: 144 TDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDAN 203
P + + ++ + ++ A PS S T A T AS + A
Sbjct: 296 HGTVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATT---TQASAVALSSAG 352
Query: 204 PSTNTDASPSTNT-DANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPST 262
+ P T A N P + T+ S+ + + + N P+T+ A+P++
Sbjct: 353 VLPSDVTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTAN---GPTTSLPAAPAS 409
Query: 263 NTDANPST 270
N +P++
Sbjct: 410 NIPVSPTS 417
Score = 35.5 bits (81), Expect = 0.11
Identities = 33/174 (18%), Positives = 58/174 (33%), Gaps = 8/174 (4%)
Query: 57 SNTTNQAITIVKREKSPDRDCVQVKADPPASATVTTSNTTNQAITIVKHANPSTNTDASP 116
+ N+ I+I+ K D D A + P S
Sbjct: 252 DDPVNRRISILVLNKQSQHDIEHENLDNRALDIEKATGLKQIDTH---GTVPVAAVTPSS 308
Query: 117 STNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNT 176
+ + + ++ A PS + T A+ T A ++ PS T
Sbjct: 309 AVTQSSAITPSSAAIPSPAVIPSSVTTQSATT-TQASAVALSSAGVLPSDVTLPGTVALP 367
Query: 177 DASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPST 230
A P N P + T+ S+ + + N P+T+ A P++N SP++
Sbjct: 368 AAEP-VNMQPQPMSTTETQQSSTGNITSTAN---GPTTSLPAAPASNIPVSPTS 417
Score = 33.5 bits (76), Expect = 0.33
Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 4/122 (3%)
Query: 151 NTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDA 210
D + + A ++ S T +S + + A ++ +T T A+ + A
Sbjct: 292 QIDTHGTVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSA 351
Query: 211 SPSTNTDANPSTNT-DASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPS 269
+ P T A+ N P + T+ S+ + + N P+T+ A P+
Sbjct: 352 GVLPSDVTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTAN---GPTTSLPAAPA 408
Query: 270 TN 271
+N
Sbjct: 409 SN 410
Score = 29.3 bits (65), Expect = 7.4
Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 6/117 (5%)
Query: 53 TVTTSNTTNQAITIVKREKSPDRDCVQVKADPPASATVTTSNTTNQAITIVKHANPSTNT 112
+S T + P + ++ T S + ++ T
Sbjct: 304 VTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSDVTLPGT 363
Query: 113 DASPST---NTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPST 166
A P+ N P + T+ S+ + + N P+T+ A P++N SP++
Sbjct: 364 VALPAAEPVNMQPQPMSTTETQQSSTGNITSTAN---GPTTSLPAAPASNIPVSPTS 417
>gnl|CDD|223020 PHA03246, PHA03246, large tegument protein UL36; Provisional.
Length = 3095
Score = 37.3 bits (86), Expect = 0.040
Identities = 31/212 (14%), Positives = 69/212 (32%), Gaps = 20/212 (9%)
Query: 89 TVTTSNTTNQAITIVKHANPSTNTDASPSTNT-DANPSTNTDASPSTNT--DANPSTNTD 145
+ ++++ + + P + + PST A+ + N P+ + +
Sbjct: 338 ADSYADSSPKLHSESTDLTPHEHGEYDPSTLVGGASTNINISDPPARTDCRRYSEGSVIH 397
Query: 146 ASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTD-----ANPSTN-TDASPSTN 199
S ++ + T + + +DA + D S T D + S N D
Sbjct: 398 ESVDSHIE--DVTEATSVVAAWSDAFSDISEDYSHLTRPDLPATAHDVSKNGHDTKSDRR 455
Query: 200 TDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPST----- 254
+ + S + PS ++ + P+ + PS + + + +
Sbjct: 456 SRGSNSRHKRRRPSWTPPSSSENVSSDGPTFSQSRKPSRKSKRALDLDYGHLSNEPSDVD 515
Query: 255 --NTDASPST--NTDANPSTNTDANLSNKLAD 282
N+D+ N N S N + + D
Sbjct: 516 GENSDSPAGAISNIPDNVSFNEFISSQARAED 547
>gnl|CDD|222890 PHA02584, 34, long tail fiber, proximal subunit; Provisional.
Length = 1229
Score = 36.3 bits (84), Expect = 0.063
Identities = 33/223 (14%), Positives = 60/223 (26%), Gaps = 12/223 (5%)
Query: 53 TVTTSNTTNQAITIVKREKSPDRDCVQVKADPPASATVTTSNTTNQAI----TIVKHANP 108
TV S T + + A++T+TT NT+N +
Sbjct: 906 TVNGSLTFTKNTNLSA--PLVSSSTATFGGSVTANSTLTTQNTSNGTVVVVDETSIAFYS 963
Query: 109 STNTDASPSTNTD-ANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASP--- 164
NT + N D N +A+ + N + A + A
Sbjct: 964 QNNTTGNIVFNIDGTVDPINVNANGTLNATGVATNGRAVYAEGGGIARTNNAARAITGGF 1023
Query: 165 STNTDANPSTN--TDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPST 222
+ D + + T A T + + + N + +A + +
Sbjct: 1024 TIRNDGSTTVFLLTAAGDQTGGFNGLKSLIINNANGQVTINDNYIINAGGTIMSGGLTVN 1083
Query: 223 NTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTD 265
+ S T + D + D N S + P
Sbjct: 1084 SRIRSQGTKASYTRAPTADTVGFWSVDINDSATYNQFPGYFQM 1126
Score = 35.9 bits (83), Expect = 0.087
Identities = 28/210 (13%), Positives = 57/210 (27%), Gaps = 12/210 (5%)
Query: 89 TVTTSNTTNQAITIVKHANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASP 148
TV S T + + S+ S ++ +T ++ + S +
Sbjct: 906 TVNGSLTFTKNTNLSAPLVSSSTATFGGSVTANSTLTTQNTSNGTVVVVDETSIAFYS-- 963
Query: 149 STNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNT 208
NT N N D N +A+ + N + A +
Sbjct: 964 QNNTTGNIVFNIDG-------TVDPINVNANGTLNATGVATNGRAVYAEGGGIARTNNAA 1016
Query: 209 DASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANP 268
A T N + T + D T + N + + + +A
Sbjct: 1017 RAITGGFTIRNDGSTTVFLLTAAGD---QTGGFNGLKSLIINNANGQVTINDNYIINAGG 1073
Query: 269 STNTDANLSNKLADKKTNISTNSSSPIVVT 298
+ + N + ++ + +P T
Sbjct: 1074 TIMSGGLTVNSRIRSQGTKASYTRAPTADT 1103
>gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane
glycoprotein G.
Length = 408
Score = 35.8 bits (82), Expect = 0.066
Identities = 42/165 (25%), Positives = 59/165 (35%), Gaps = 7/165 (4%)
Query: 90 VTTSNTTNQAITIVKHANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPS 149
VTTS TT+ + PS T S +T ST T T ++P
Sbjct: 172 VTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTSSNPE 231
Query: 150 TNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTD 209
T+ PS PS + PST + ST D T +P T S ++
Sbjct: 232 PQTEPPPSQR---GPSGSPQHPPSTTSQDQ-STTGDGQEHTQRRKTPPA-TSNRRSPHST 286
Query: 210 ASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPST 254
A+P T + P+ T + S + P ANP+T
Sbjct: 287 ATPPPTTKRQETGRPTPRPTATTQSGSSPPHSSPPG--VQANPTT 329
Score = 30.0 bits (67), Expect = 4.1
Identities = 25/159 (15%), Positives = 47/159 (29%), Gaps = 3/159 (1%)
Query: 147 SPSTNTDANPSTNTDASPSTNTDANPSTNTDA---SPSTNTDANPSTNTDASPSTNTDAN 203
+ T + + P+ + P + +T ST + T T +N
Sbjct: 170 TAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTSSN 229
Query: 204 PSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTN 263
P T+ PS + + ++ S + A + + S +T
Sbjct: 230 PEPQTEPPPSQRGPSGSPQHPPSTTSQDQSTTGDGQEHTQRRKTPPATSNRRSPHSTATP 289
Query: 264 TDANPSTNTDANLSNKLADKKTNISTNSSSPIVVTSEPS 302
T A ++ S SSP V + P+
Sbjct: 290 PPTTKRQETGRPTPRPTATTQSGSSPPHSSPPGVQANPT 328
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like. Vta1 (VPS20-associated protein 1) is
a positive regulator of Vps4. Vps4 is an ATPase that is
required in the multivesicular body (MVB) sorting
pathway to dissociate the endosomal sorting complex
required for transport (ESCRT). Vta1 promotes correct
assembly of Vps4 and stimulates its ATPase activity
through its conserved Vta1/SBP1/LIP5 region.
Length = 315
Score = 35.8 bits (83), Expect = 0.066
Identities = 22/136 (16%), Positives = 38/136 (27%), Gaps = 8/136 (5%)
Query: 120 TDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDAS 179
D NP P D + T S ++ + + + + + + +
Sbjct: 146 EDPNPG-----PPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSP 200
Query: 180 PSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTN 239
P + + S+ A PS+ P + TN P P ST
Sbjct: 201 PEDPSSPSDSSLPPA-PSSFQSDTPPPS--PESPTNPSPPPGPAAPPPPPVQQVPPLSTA 257
Query: 240 TDASPSTNTDANPSTN 255
PS + P
Sbjct: 258 KPTPPSASATPAPIGG 273
Score = 35.8 bits (83), Expect = 0.066
Identities = 22/136 (16%), Positives = 38/136 (27%), Gaps = 8/136 (5%)
Query: 136 TDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDAS 195
D NP P D + T S ++ + + + + + + +
Sbjct: 146 EDPNPG-----PPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSP 200
Query: 196 PSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTN 255
P + + S+ A PS+ P + TN P P ST
Sbjct: 201 PEDPSSPSDSSLPPA-PSSFQSDTPPPS--PESPTNPSPPPGPAAPPPPPVQQVPPLSTA 257
Query: 256 TDASPSTNTDANPSTN 271
PS + P
Sbjct: 258 KPTPPSASATPAPIGG 273
Score = 35.4 bits (82), Expect = 0.076
Identities = 17/111 (15%), Positives = 38/111 (34%), Gaps = 1/111 (0%)
Query: 114 ASPSTNTDANPSTNTDASPSTNTDANP-STNTDASPSTNTDANPSTNTDASPSTNTDANP 172
+ + + ++ P + D + ++ +D S + PS D + +++ P+ ++ +
Sbjct: 163 VATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSD 222
Query: 173 STNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTN 223
+ TN P P ST PS + P
Sbjct: 223 TPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGG 273
Score = 34.3 bits (79), Expect = 0.17
Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 1/101 (0%)
Query: 108 PSTNTDASPSTNTDANP-STNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPST 166
P + D + ++ +D S + PS D + +++ P+ ++ + + T
Sbjct: 173 PGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPT 232
Query: 167 NTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTN 207
N P P ST PS + P
Sbjct: 233 NPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGG 273
Score = 28.9 bits (65), Expect = 9.8
Identities = 14/109 (12%), Positives = 31/109 (28%)
Query: 83 DPPASATVTTSNTTNQAITIVKHANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPST 142
+ + + + + + S + PS D + +++ P+ ++ + +
Sbjct: 165 TTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTP 224
Query: 143 NTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTN 191
TN P P ST PS + P
Sbjct: 225 PPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGG 273
>gnl|CDD|219927 pfam08601, PAP1, Transcription factor PAP1. The transcription
factor Pap1 regulates antioxidant-gene transcription in
response to H2O2. This region is cysteine rich.
Alkylation of cysteine residues following treatment with
a cysteine alkylating agent can mask the accessibility
of the nuclear exporter Crm1, triggering nuclear
accumulation and Pap1 dependent transcriptional
expression.
Length = 344
Score = 35.3 bits (81), Expect = 0.084
Identities = 25/155 (16%), Positives = 62/155 (40%)
Query: 124 PSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTN 183
P ++S S+ ++ S N + N T+ ++ N N + + A+ S
Sbjct: 45 PKLAKNSSVSSPVPGLLNSTESNVSSPNNNPNGYTSPSSAAMNNKSNNRAVDPSANASAA 104
Query: 184 TDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDAS 243
+ +P+ ++ N++ N S+++ +S S ++ SP +T++ P + +
Sbjct: 105 STNSPNGLQSSATQYNSNDNSSSDSPSSGSDGFTNQLLSSLGTSPEPSTESPPQLASVNN 164
Query: 244 PSTNTDANPSTNTDASPSTNTDANPSTNTDANLSN 278
+ + S + S +++T P +
Sbjct: 165 FAAIRNNAESNSNVPSAASSTPNIPGIDFLLAFPG 199
Score = 31.5 bits (71), Expect = 1.5
Identities = 22/140 (15%), Positives = 58/140 (41%)
Query: 140 PSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTN 199
P ++S S+ ++ S N + N T+ ++ N N + + A+ S
Sbjct: 45 PKLAKNSSVSSPVPGLLNSTESNVSSPNNNPNGYTSPSSAAMNNKSNNRAVDPSANASAA 104
Query: 200 TDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDAS 259
+ +P+ ++ N++ N S+++ +S S ++ SP +T++ P + +
Sbjct: 105 STNSPNGLQSSATQYNSNDNSSSDSPSSGSDGFTNQLLSSLGTSPEPSTESPPQLASVNN 164
Query: 260 PSTNTDANPSTNTDANLSNK 279
+ + S + + ++
Sbjct: 165 FAAIRNNAESNSNVPSAASS 184
Score = 29.9 bits (67), Expect = 5.1
Identities = 25/153 (16%), Positives = 63/153 (41%), Gaps = 2/153 (1%)
Query: 106 ANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNT--DASPSTNTDANPSTNTDAS 163
P + S ++ N+ S ++ + NP+ T ++ N N + + A+
Sbjct: 41 NCPIPKLAKNSSVSSPVPGLLNSTESNVSSPNNNPNGYTSPSSAAMNNKSNNRAVDPSAN 100
Query: 164 PSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTN 223
S + +P+ ++ N++ N S+++ +S S ++ SP +T++ P
Sbjct: 101 ASAASTNSPNGLQSSATQYNSNDNSSSDSPSSGSDGFTNQLLSSLGTSPEPSTESPPQLA 160
Query: 224 TDASPSTNTDANPSTNTDASPSTNTDANPSTNT 256
+ + + + S + S +++T P +
Sbjct: 161 SVNNFAAIRNNAESNSNVPSAASSTPNIPGIDF 193
Score = 29.5 bits (66), Expect = 6.8
Identities = 27/161 (16%), Positives = 62/161 (38%)
Query: 147 SPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPST 206
S S + S+ ++ + + P + T P + S ++
Sbjct: 2 SKSNQLHNDCSSMSNFNNNNFDFDFPKFCGKLPGACGTKNCPIPKLAKNSSVSSPVPGLL 61
Query: 207 NTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDA 266
N+ S ++ + NP+ T S + + + + D S + + + S N S +T ++
Sbjct: 62 NSTESNVSSPNNNPNGYTSPSSAAMNNKSNNRAVDPSANASAASTNSPNGLQSSATQYNS 121
Query: 267 NPSTNTDANLSNKLADKKTNISTNSSSPIVVTSEPSIVSKD 307
N ++++D+ S +S+ +SP T P ++
Sbjct: 122 NDNSSSDSPSSGSDGFTNQLLSSLGTSPEPSTESPPQLASV 162
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 35.7 bits (82), Expect = 0.087
Identities = 26/176 (14%), Positives = 59/176 (33%), Gaps = 11/176 (6%)
Query: 78 VQVKADPPASATVTTSNTTNQAITIVKHANPSTNTDASPSTNTDANPSTNTDASPSTNT- 136
VQ + + + S T + + ++ S + + S + D+ T
Sbjct: 233 VQNSGGNHSLSKSSNSQTPELEYSEKGKDHHHSHNHQHHSIGINNHHSKHADSKLQTIEV 292
Query: 137 ------DANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPST 190
+ PS+++ T + S + S ++ + +N + S S+ + +
Sbjct: 293 IENHSNKSRPSSSSTNGSKETTSNSSSAAAGSIGSKSSKSAKHSNRNKSNSSPKSHSSAN 352
Query: 191 NTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPST 246
+ S S + + + S S D+ DAS + + + ST
Sbjct: 353 GSVPSSSVSDNESKQKRASKSSSGARDSKK----DASGMSANGTVENCIPENKIST 404
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 35.8 bits (83), Expect = 0.10
Identities = 26/186 (13%), Positives = 57/186 (30%), Gaps = 3/186 (1%)
Query: 482 SSSDPSSTSSNSDATSSSIDAIIDQIWDMRKFLNTNSNPDSSSDEIEILNTDSKSKPRSP 541
SS+D S +S + ++ D +NS+ D+ E KS +
Sbjct: 1184 SSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRL 1243
Query: 542 EVITISSTPSHSKSKSPNEVTTVNKTKKSKAKKIEEVVVLNTISPAKPVADITYENTISN 601
+ +S+ S + + + K A K V + P+K + + +
Sbjct: 1244 KSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPS 1303
Query: 602 KFLNTNSNPDSSSDEVEILNTDSKSKPRSPEVITISSTPSNSKSKSPNEVTTVNKTKKSK 661
L KS+ ++ + + + + + + +K K
Sbjct: 1304 SPTKKKVKKRLEGSLAA-LKKKKKSEKKTARKKKSKTRVKQASASQSSRLLR--RPRKKK 1360
Query: 662 AKKIEE 667
+ E
Sbjct: 1361 SDSSSE 1366
>gnl|CDD|139494 PRK13335, PRK13335, superantigen-like protein; Reviewed.
Length = 356
Score = 35.1 bits (80), Expect = 0.10
Identities = 32/152 (21%), Positives = 56/152 (36%), Gaps = 7/152 (4%)
Query: 53 TVTTSNTTNQAITIVKREKSPDRDCVQVKADPPASATVTTSNTTNQAITIVKHANPSTNT 112
TVTT + + I K +K P +KA+ A +T + +
Sbjct: 22 TVTTQSVKAEKIQSTKVDKVP-----TLKAERLAMINITAGANSATTQAANTRQERTPKL 76
Query: 113 DASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANP 172
+ +P+TN + ++ + + S N A+P+ + + +T +P T P
Sbjct: 77 EKAPNTNEEKTSASKIEKISQPKQEEQKSLNISATPAPKQEQSQTTTESTTPKTKVTTPP 136
Query: 173 STNTDASPSTNTDANPSTNTDASPSTNTDANP 204
STNT + P + T TD P
Sbjct: 137 STNTPQPMQSTKSDTPQSPT--IKQAQTDMTP 166
Score = 34.7 bits (79), Expect = 0.14
Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 7/167 (4%)
Query: 86 ASATVTTSNTTNQAITIVKHANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTD 145
A ++ T AIT+ S + ST D P+ + N A N+
Sbjct: 7 AKTSLALGLLTTGAITVTTQ---SVKAEKIQSTKVDKVPTLKAERLAMINITA--GANSA 61
Query: 146 ASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPS 205
+ + NT + + +P+TN + ++ + + S N A+P+ + + +
Sbjct: 62 TTQAANTRQERTPKLEKAPNTNEEKTSASKIEKISQPKQEEQKSLNISATPAPKQEQSQT 121
Query: 206 TNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANP 252
T +P T PSTNT + P + T TD P
Sbjct: 122 TTESTTPKTKVTTPPSTNTPQPMQSTKSDTPQSPT--IKQAQTDMTP 166
Score = 34.7 bits (79), Expect = 0.16
Identities = 30/144 (20%), Positives = 53/144 (36%), Gaps = 4/144 (2%)
Query: 125 STNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNT 184
S + ST D P+ + N A N+ + + NT + + +P+TN
Sbjct: 27 SVKAEKIQSTKVDKVPTLKAERLAMINITA--GANSATTQAANTRQERTPKLEKAPNTNE 84
Query: 185 DANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASP 244
+ ++ + + S N A+P+ + + +T +P T PSTNT
Sbjct: 85 EKTSASKIEKISQPKQEEQKSLNISATPAPKQEQSQTTTESTTPKTKVTTPPSTNTPQPM 144
Query: 245 STNTDANPSTNTDASPSTNTDANP 268
+ P + T TD P
Sbjct: 145 QSTKSDTPQSPT--IKQAQTDMTP 166
Score = 34.3 bits (78), Expect = 0.17
Identities = 27/132 (20%), Positives = 50/132 (37%), Gaps = 2/132 (1%)
Query: 141 STNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNT 200
S + ST D P+ + N A N+ + + NT + + +P+TN
Sbjct: 27 SVKAEKIQSTKVDKVPTLKAERLAMINITA--GANSATTQAANTRQERTPKLEKAPNTNE 84
Query: 201 DANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASP 260
+ ++ + + S N A+P+ + + +T +P T PSTNT
Sbjct: 85 EKTSASKIEKISQPKQEEQKSLNISATPAPKQEQSQTTTESTTPKTKVTTPPSTNTPQPM 144
Query: 261 STNTDANPSTNT 272
+ P + T
Sbjct: 145 QSTKSDTPQSPT 156
Score = 33.9 bits (77), Expect = 0.30
Identities = 26/136 (19%), Positives = 53/136 (38%), Gaps = 2/136 (1%)
Query: 157 STNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNT 216
S + ST D P+ + N A N+ + + NT + + +P+TN
Sbjct: 27 SVKAEKIQSTKVDKVPTLKAERLAMINITA--GANSATTQAANTRQERTPKLEKAPNTNE 84
Query: 217 DANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDANL 276
+ ++ + + S N A+P+ + + +T +P T PSTNT +
Sbjct: 85 EKTSASKIEKISQPKQEEQKSLNISATPAPKQEQSQTTTESTTPKTKVTTPPSTNTPQPM 144
Query: 277 SNKLADKKTNISTNSS 292
+ +D + + +
Sbjct: 145 QSTKSDTPQSPTIKQA 160
Score = 30.9 bits (69), Expect = 2.1
Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 9/145 (6%)
Query: 189 STNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNT 248
S + ST D P+ + N A N+ + + NT + + +P+TN
Sbjct: 27 SVKAEKIQSTKVDKVPTLKAERLAMINITA--GANSATTQAANTRQERTPKLEKAPNTNE 84
Query: 249 DANPSTNTDASPSTNTDANPSTNTDANLSNKLADKKTNISTNSSSPIVVTSEPSIVSKDV 308
+ T AS + N A + ++ T + + +
Sbjct: 85 E-----KTSASKIEKISQPKQEEQKS--LNISATPAPKQEQSQTTTESTTPKTKVTTPPS 137
Query: 309 VNVTKPTVTTSNTTNQAITIVKREK 333
N +P +T + T Q+ TI + +
Sbjct: 138 TNTPQPMQSTKSDTPQSPTIKQAQT 162
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 34.9 bits (80), Expect = 0.18
Identities = 27/150 (18%), Positives = 47/150 (31%), Gaps = 3/150 (2%)
Query: 108 PSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTN 167
P + +P A P A+ + A P+ + A P T
Sbjct: 2704 PPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPT- 2762
Query: 168 TDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDAS-PSTNTDANPSTNTDA 226
T P+ A+P+ + AS S + ++ PS A P+ + A
Sbjct: 2763 TAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAA 2822
Query: 227 SPSTNTDANPSTNTDASPSTNTDANPSTNT 256
SP+ P++ +P P +
Sbjct: 2823 SPAG-PLPPPTSAQPTAPPPPPGPPPPSLP 2851
Score = 34.9 bits (80), Expect = 0.18
Identities = 27/150 (18%), Positives = 47/150 (31%), Gaps = 3/150 (2%)
Query: 124 PSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTN 183
P + +P A P A+ + A P+ + A P T
Sbjct: 2704 PPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPT- 2762
Query: 184 TDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDAS-PSTNTDANPSTNTDA 242
T P+ A+P+ + AS S + ++ PS A P+ + A
Sbjct: 2763 TAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAA 2822
Query: 243 SPSTNTDANPSTNTDASPSTNTDANPSTNT 272
SP+ P++ +P P +
Sbjct: 2823 SPAG-PLPPPTSAQPTAPPPPPGPPPPSLP 2851
Score = 33.0 bits (75), Expect = 0.74
Identities = 26/142 (18%), Positives = 43/142 (30%), Gaps = 3/142 (2%)
Query: 84 PPASATVTTSNTTNQAITIVKHANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTN 143
P A + T A A P+ + A P T T P+
Sbjct: 2712 PHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPT-TAGPPAPA 2770
Query: 144 TDASPSTNTDANPSTNTDASPSTNTDANPSTNTDAS-PSTNTDANPSTNTDASPSTNTDA 202
A+P+ + AS S + ++ PS A P+ + ASP+
Sbjct: 2771 PPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAG-PLP 2829
Query: 203 NPSTNTDASPSTNTDANPSTNT 224
P++ +P P +
Sbjct: 2830 PPTSAQPTAPPPPPGPPPPSLP 2851
>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 944
Score = 34.7 bits (80), Expect = 0.22
Identities = 18/143 (12%), Positives = 36/143 (25%), Gaps = 10/143 (6%)
Query: 115 SPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPST 174
+P + + +SP + + T + AS S
Sbjct: 647 TPPSRAPPASLSKPASSPDASQTSASFDLDPDFELA-THQSVPEAALASGSAPAPPPVPD 705
Query: 175 NTDASP-------STNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDAS 227
D P ++ D + + DA+ S P +A
Sbjct: 706 PYDRPPWEEAPEVASANDGPNNAAEGNLSESVEDASNSELQAVEQQAT--HQPQVQAEAQ 763
Query: 228 PSTNTDANPSTNTDASPSTNTDA 250
+T A T+++ +
Sbjct: 764 SPASTTALTQTSSEVQDTELNLV 786
Score = 29.7 bits (67), Expect = 6.0
Identities = 31/225 (13%), Positives = 64/225 (28%), Gaps = 22/225 (9%)
Query: 121 DANPSTNTDASPSTNTDANPSTNTD-ASPSTNTDANPSTNTDASPSTNTD--------AN 171
+ + + + + A PS+ + + S T A+ S D A
Sbjct: 560 SSESYNALSDDEQHSANVQSAQSAAEAQPSSQSLSPISAVTTAAASLADDDILDAVLAAR 619
Query: 172 PSTNTD---ASPSTNTDANPSTNTDA-SPSTNTDANPSTNTDASPSTNTDANPSTNTDAS 227
S +D SP S + +P + + +SP + +
Sbjct: 620 DSLLSDLDALSPKEGDGKKSSADRKPKTPPSRAPPASLSKPASSPDASQTSASFDLDPDF 679
Query: 228 PSTNTDANPSTNTDASPSTNTDANPSTNTD-----ASPSTNTDANPSTNTDANLSNKLAD 282
T + AS S D +P + + N ++ +
Sbjct: 680 ELA-THQSVPEAALASGSAPAPPPVPDPYDRPPWEEAPEVASANDGPNNAAEGNLSESVE 738
Query: 283 KKTNISTNSSSPIVVTSEPSIVSK--DVVNVTKPTVTTSNTTNQA 325
+N + T +P + ++ + T T T+S +
Sbjct: 739 DASNSELQAVEQ-QATHQPQVQAEAQSPASTTALTQTSSEVQDTE 782
>gnl|CDD|236140 PRK08026, PRK08026, flagellin; Validated.
Length = 529
Score = 33.9 bits (78), Expect = 0.30
Identities = 29/228 (12%), Positives = 50/228 (21%), Gaps = 4/228 (1%)
Query: 35 VTSEPSIVSKDVVNVTKPTVTTSNTTNQAITIVKREKSPDR----DCVQVKADPPASATV 90
V + + VS T + + + D V A
Sbjct: 181 VANTAATVSDLTAAGATLDTTGLYDVKTKNAALTTADALAKLGDGDKVTATATGGDYTYN 240
Query: 91 TTSNTTNQAITIVKHANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPST 150
S A T + T D N D+ + T
Sbjct: 241 AKSGKYQAADLAATLTPDVGGTAGASYTIKDGTYEVNVDSDGKITLGGSALYIDATGNLT 300
Query: 151 NTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDA 210
+A +T T + + A+ + T + + D
Sbjct: 301 TNNAGAATKATLDALKKTASEGAATAKAALAAAGVTVADGVTAKTVKMSYTDKNGKVIDG 360
Query: 211 SPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDA 258
+ T + + A + T +T T AN D
Sbjct: 361 GYAVKTGDDYYAADYDEITGAISATTTYYTAKDGTTKTAANKLGGADG 408
Score = 29.7 bits (67), Expect = 5.7
Identities = 31/211 (14%), Positives = 54/211 (25%), Gaps = 6/211 (2%)
Query: 81 KADPPASATVTTSNTTNQAITIVKHANPSTNTDASPSTNTDANPSTNTDASPSTNTDANP 140
A+ T S+ T T+ T + T DA +
Sbjct: 177 GKGTVANTAATVSDLTAAGATLDTTGLYDVKTKNAALTTADALAKLGDGDKVTATATGGD 236
Query: 141 STNTDASPSTNTDANPSTNT-DASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPS-T 198
T S +T T D + T D + N D++ S
Sbjct: 237 YTYNAKSGKYQAADLAATLTPDVGGTAGASY---TIKDGTYEVNVDSDGKITLGGSALYI 293
Query: 199 NTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDA 258
+ N +TN + + T +T A + + + TD
Sbjct: 294 DATGNLTTNNAGAATKATLDALKKTASEGAATAKAALAAAGVTVADGVTAKTVKMSYTDK 353
Query: 259 SPSTNTDANPSTNTDANLSNKLADKKTNIST 289
+ D + T + D+ T +
Sbjct: 354 N-GKVIDGGYAVKTGDDYYAADYDEITGAIS 383
>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional.
Length = 1560
Score = 33.9 bits (77), Expect = 0.35
Identities = 46/216 (21%), Positives = 89/216 (41%), Gaps = 14/216 (6%)
Query: 84 PPASATVTTSNTTNQAITIVKHANPS-TNTDASPSTNTDANPSTNTDASPSTNTDANPST 142
P ++A+ + +N A + +N +N S N+ NP N + +T + P++
Sbjct: 383 PHSNASYNCAAYSNAAQSNAAQSNAGFSNAGYSNPGNS--NPGYNNAPNSNTPYNNPPNS 440
Query: 143 NTDAS--PSTNTDAN--PSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPST 198
NT S P++N + P +NT S + ++A PS+ D + + + +
Sbjct: 441 NTPYSNPPNSNPPYSNLPYSNTPYSNAPLSNAPPSSAKDHHSAYHAAYQHRAANQPAANL 500
Query: 199 NTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNT-- 256
T P+ N + N+ NP + S N +T D + + +P T
Sbjct: 501 PTANQPAANNFHGAAGNSVGNPFASRPFG-SAPYGGNAATTADPNGIAKREDHPEGGTNR 559
Query: 257 ---DASPSTNTDANPSTNTDANLSNKLADKKTNIST 289
+ S + +++ S N+ N N++ DK I +
Sbjct: 560 QKYEQSDEESVESSSSENSSEN-ENEVTDKGEEIYS 594
>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 624
Score = 33.9 bits (77), Expect = 0.36
Identities = 26/131 (19%), Positives = 50/131 (38%), Gaps = 6/131 (4%)
Query: 103 VKHANPSTNTDASPSTNTDANPSTNTDAS---PSTNTDANPSTNTDASPSTNTDANPSTN 159
V+ PS ++PS + P++ A+ P T + +PS+ A P+ +
Sbjct: 368 VESLRPSGGGASAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPS 427
Query: 160 TDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDAN 219
SP D P + +ASP + ++ +DA P+ ++
Sbjct: 428 AAPSPRVPWDDAPPAPPRSGIPPRPAPRMP---EASPVPGAPDSVASASDAPPTLGDPSD 484
Query: 220 PSTNTDASPST 230
+ +T + P T
Sbjct: 485 TAEHTPSGPRT 495
Score = 33.1 bits (75), Expect = 0.51
Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 3/100 (3%)
Query: 147 SPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPST 206
+P T + +PS+ A P+ + SP D P +
Sbjct: 399 TPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDDAPPAPPRSGIPPRPAPRMP- 457
Query: 207 NTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPST 246
+ASP + ++ +DA P+ ++ + +T + P T
Sbjct: 458 --EASPVPGAPDSVASASDAPPTLGDPSDTAEHTPSGPRT 495
Score = 33.1 bits (75), Expect = 0.51
Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 3/100 (3%)
Query: 163 SPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPST 222
+P T + +PS+ A P+ + SP D P +
Sbjct: 399 TPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDDAPPAPPRSGIPPRPAPRMP- 457
Query: 223 NTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPST 262
+ASP + ++ +DA P+ ++ + +T + P T
Sbjct: 458 --EASPVPGAPDSVASASDAPPTLGDPSDTAEHTPSGPRT 495
Score = 31.6 bits (71), Expect = 1.8
Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
Query: 98 QAITIVKHANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTD-----ASPSTNT 152
Q PS+ A+P+ + +P D +P + ASP
Sbjct: 406 QGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDDAPPAPPRSGIPPRPAPRMPEASPVPGA 465
Query: 153 DANPSTNTDASPSTNTDANPSTNTDASPST 182
+ ++ +DA P+ ++ + +T + P T
Sbjct: 466 PDSVASASDAPPTLGDPSDTAEHTPSGPRT 495
Score = 29.3 bits (65), Expect = 8.3
Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 3/96 (3%)
Query: 179 SPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPST 238
+P T + +PS+ A P+ + SP D P +
Sbjct: 399 TPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDDAPPAPPRSGIPPRPAPRMP- 457
Query: 239 NTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDA 274
+ASP + ++ +DA P+ ++ + +T +
Sbjct: 458 --EASPVPGAPDSVASASDAPPTLGDPSDTAEHTPS 491
>gnl|CDD|233044 TIGR00600, rad2, DNA excision repair protein (rad2). All proteins
in this family for which functions are known are flap
endonucleases that generate the 3' incision next to DNA
damage as part of nucleotide excision repair. This
family is related to many other flap endonuclease
families including the fen1 family. This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1034
Score = 33.3 bits (76), Expect = 0.47
Identities = 38/214 (17%), Positives = 70/214 (32%), Gaps = 27/214 (12%)
Query: 460 PGELESPSVPSSSDPIESLSIPSSSDPSSTSS-----NSDATSSSIDAIIDQIWDMRKFL 514
P E S IE P SS+ S + I + +F
Sbjct: 502 PSEFTILDRKSEL-SIERTVKPVSSEFGLPSQREDKLAIPTEGTQNLQGISDHPEQFEFQ 560
Query: 515 NTNSNPDSSSDEIEILNTDSKSKPRSPEVITISSTPSHSKSKSPNEVTTVNKTKKSK--- 571
N S ++ ++E + + +PE+ + SS S++ E T + K+ +
Sbjct: 561 NELSPLETKNNESNLSSDAETEGSPNPEMPSWSSVTVPSEALDNYETTNPSNAKEVRNFA 620
Query: 572 -----AKKIEEVVVLNTISPAKPVADITYENTISNKFLNTNSNPDSSSDEVEILNTDSKS 626
+ E L IS V + E S D S EV+ +++ +
Sbjct: 621 ETGIQTTNVGESADLLLISNPMEVEPMESEKE--------ESESDGSFIEVDSVSSTLEL 672
Query: 627 KPRSPEVITISSTPSNSKSKSPNEVTTVNKTKKS 660
+ S T S+ + N+V ++ +
Sbjct: 673 QVPSKSQPT-----DESEENAENKVASIEGEHRK 701
>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog.
Length = 808
Score = 33.4 bits (76), Expect = 0.49
Identities = 38/180 (21%), Positives = 66/180 (36%), Gaps = 22/180 (12%)
Query: 165 STNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNT 224
T T + + + ++P T+ SP + ++ N + SP T + +
Sbjct: 2 ETETKEPEDPADNVNDVVSEASSPETDLSLSP-SQSEQNIENDGQNSPETQSPLTELQPS 60
Query: 225 DASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPS-----------TNTDANPS--TN 271
P+T DA S + S+ +T+ +P T +ANP+ +
Sbjct: 61 PLPPNTTLDAPVSDSQGDESSSEQQPQNPNSTEPAPPPKKRRRRKRFFTEINANPAFRRH 120
Query: 272 TDANLSNKLADKKTNISTNSSSPIVVTSEPSIVSKDVVNVTKPTVTTSNTTNQAITIVKR 331
K D + I+ + P+ +E I + NV V+T T QA IV R
Sbjct: 121 RVRGGLGKEVDVEALIAISVGFPVDSLTEEEIEA----NV----VSTIGGTEQANYIVVR 172
Score = 31.1 bits (70), Expect = 2.2
Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 12/116 (10%)
Query: 117 STNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNT 176
T T + + + ++P T+ SP + ++ N + SP T + +
Sbjct: 2 ETETKEPEDPADNVNDVVSEASSPETDLSLSP-SQSEQNIENDGQNSPETQSPLTELQPS 60
Query: 177 DASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPS-----------TNTDANPS 221
P+T DA S + S+ +T+ +P T +ANP+
Sbjct: 61 PLPPNTTLDAPVSDSQGDESSSEQQPQNPNSTEPAPPPKKRRRRKRFFTEINANPA 116
Score = 31.1 bits (70), Expect = 2.2
Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 12/116 (10%)
Query: 133 STNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNT 192
T T + + + ++P T+ SP + ++ N + SP T + +
Sbjct: 2 ETETKEPEDPADNVNDVVSEASSPETDLSLSP-SQSEQNIENDGQNSPETQSPLTELQPS 60
Query: 193 DASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPS-----------TNTDANPS 237
P+T DA S + S+ +T+ +P T +ANP+
Sbjct: 61 PLPPNTTLDAPVSDSQGDESSSEQQPQNPNSTEPAPPPKKRRRRKRFFTEINANPA 116
Score = 31.1 bits (70), Expect = 2.2
Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 12/116 (10%)
Query: 149 STNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNT 208
T T + + + ++P T+ SP + ++ N + SP T + +
Sbjct: 2 ETETKEPEDPADNVNDVVSEASSPETDLSLSP-SQSEQNIENDGQNSPETQSPLTELQPS 60
Query: 209 DASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPS-----------TNTDANPS 253
P+T DA S + S+ +T+ +P T +ANP+
Sbjct: 61 PLPPNTTLDAPVSDSQGDESSSEQQPQNPNSTEPAPPPKKRRRRKRFFTEINANPA 116
>gnl|CDD|151642 pfam11200, DUF2981, Protein of unknown function (DUF2981). This
eukaryotic family of proteins has no known function.
Length = 319
Score = 32.9 bits (74), Expect = 0.58
Identities = 15/73 (20%), Positives = 28/73 (38%)
Query: 207 NTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDA 266
+ +T+ + S TD + + N NP A+ N+ ++ + S + A
Sbjct: 172 KNSGDTTGDTNGDGSGGTDGTANYNAYDNPDGKVGAAKDLNSGNTANSVNNTPNSVDNTA 231
Query: 267 NPSTNTDANLSNK 279
PS N + K
Sbjct: 232 KPSDNGSNSAGEK 244
Score = 31.4 bits (70), Expect = 1.8
Identities = 16/79 (20%), Positives = 29/79 (36%)
Query: 111 NTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDA 170
+ +T+ + S TD + + N NP A+ N+ ++ + S + A
Sbjct: 172 KNSGDTTGDTNGDGSGGTDGTANYNAYDNPDGKVGAAKDLNSGNTANSVNNTPNSVDNTA 231
Query: 171 NPSTNTDASPSTNTDANPS 189
PS N S + S
Sbjct: 232 KPSDNGSNSAGEKKKEDDS 250
Score = 31.4 bits (70), Expect = 1.8
Identities = 16/79 (20%), Positives = 29/79 (36%)
Query: 143 NTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDA 202
+ +T+ + S TD + + N NP A+ N+ ++ + S + A
Sbjct: 172 KNSGDTTGDTNGDGSGGTDGTANYNAYDNPDGKVGAAKDLNSGNTANSVNNTPNSVDNTA 231
Query: 203 NPSTNTDASPSTNTDANPS 221
PS N S + S
Sbjct: 232 KPSDNGSNSAGEKKKEDDS 250
Score = 31.4 bits (70), Expect = 1.8
Identities = 16/79 (20%), Positives = 29/79 (36%)
Query: 175 NTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDA 234
+ +T+ + S TD + + N NP A+ N+ ++ + S + A
Sbjct: 172 KNSGDTTGDTNGDGSGGTDGTANYNAYDNPDGKVGAAKDLNSGNTANSVNNTPNSVDNTA 231
Query: 235 NPSTNTDASPSTNTDANPS 253
PS N S + S
Sbjct: 232 KPSDNGSNSAGEKKKEDDS 250
Score = 31.4 bits (70), Expect = 1.8
Identities = 16/79 (20%), Positives = 29/79 (36%)
Query: 191 NTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDA 250
+ +T+ + S TD + + N NP A+ N+ ++ + S + A
Sbjct: 172 KNSGDTTGDTNGDGSGGTDGTANYNAYDNPDGKVGAAKDLNSGNTANSVNNTPNSVDNTA 231
Query: 251 NPSTNTDASPSTNTDANPS 269
PS N S + S
Sbjct: 232 KPSDNGSNSAGEKKKEDDS 250
>gnl|CDD|233574 TIGR01782, TonB-Xanth-Caul, TonB-dependent receptor. This model
represents a family of TonB-dependent outer-membrane
receptors which are found mainly in Xanthomonas and
Caulobacter. These appear to represent the expansion of
a paralogous family in that the 22 X. axonopodis (21 in
X. campestris) and 18 C. crescentus sequences are more
closely related to each other than any of the many
TonB-dependent receptors found in other species. In
fact, the Crescentus and Xanthomonas sequences are
inseparable on a phylogenetic tree using a PAM-weighted
neighbor-joining method, indicating that one of the two
genuses may have acquired this set of receptors from the
other. The mechanism by which this family is shared
between Xanthomonas, a gamma proteobacterial plant
pathogen and Caulobacter, an alpha proteobacterial
aquatic organism is unclear [Transport and binding
proteins, Porins].
Length = 845
Score = 32.7 bits (75), Expect = 0.90
Identities = 23/133 (17%), Positives = 32/133 (24%), Gaps = 8/133 (6%)
Query: 138 ANPSTNTDASPSTNTDANPS--TNTDASPSTNTDANPSTNTDASPSTNTDANPST---NT 192
N + S T T T + N T S + + +
Sbjct: 268 LNGGSTVITSNQTATSGALVQGTVANLQILVEARYNEEKETTTSLTLGGEWTGDRWTLDG 327
Query: 193 DASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANP 252
D S T P T + + + + T A DAS TN
Sbjct: 328 DLGYSKATRDRPDRVTRFFTAPTPGYDFDYRGGPTLTLGTPA---DGDDASNYTNPANGE 384
Query: 253 STNTDASPSTNTD 265
T S D
Sbjct: 385 LRRTQISYQKAED 397
Score = 29.2 bits (66), Expect = 9.4
Identities = 32/190 (16%), Positives = 50/190 (26%), Gaps = 21/190 (11%)
Query: 79 QVKADPPASATVTTSNTTNQAITIVKHANPSTNTDAS-PSTNTDANPSTNTDASPSTNTD 137
+ D + T + ++ P + D T T P+ DAS TN
Sbjct: 322 RWTLDGDLGYSKATRDRPDRVTRFFTAPTPGYDFDYRGGPTLTLGTPADGDDASNYTNPA 381
Query: 138 ANPSTNTDASPSTNTDANPSTNTDAS---PSTN-------TDANPSTNTDASPSTNTDAN 187
T S D+ + DA+ P T+ + + +
Sbjct: 382 NGELRRTQISYQKAEDSEDAAQLDATFDGPFTSLKFGVRYRRRDKTNRGS-----RYRRS 436
Query: 188 PSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTD-ASPSTNTDANPSTNTDASPST 246
T AS A ++ P T D A +A T
Sbjct: 437 IIGATGAS----GLAGVPSDLAGPGLDGGLGGPLTGWDPADLDAFLNAARGDAAGGGTYT 492
Query: 247 NTDANPSTNT 256
P+T T
Sbjct: 493 YASTAPNTYT 502
>gnl|CDD|221143 pfam11593, Med3, Mediator complex subunit 3 fungal. Mediator is a
large complex of up to 33 proteins that is conserved
from plants to fungi to humans - the number and
representation of individual subunits varying with
species. It is arranged into four different sections, a
core, a head, a tail and a kinase-activity part, and the
number of subunits within each of these is what varies
with species. Overall, Mediator regulates the
transcriptional activity of RNA polymerase II but it
would appear that each of the four different sections
has a slightly different function. Mediator subunit
Hrs1/Med3 is a physical target for Cyc8-Tup1, a yeast
transcriptional co-repressor.
Length = 381
Score = 31.9 bits (72), Expect = 1.0
Identities = 27/126 (21%), Positives = 38/126 (30%), Gaps = 6/126 (4%)
Query: 170 ANPSTNTDASPSTNTDANPSTNTDASPSTNT-DANPSTNTDASPSTNTDANPSTNTDASP 228
N N AS S +N S S + NT A +A+ + NT + +
Sbjct: 119 YNQLGNAGASASITKTSNGSDAATTSSTANTPAAAKVLKANAASAPNTTTGVGSAATTAA 178
Query: 229 STNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDANLSNKLADKKTNIS 288
+ T A T T P P P+ A S A S +
Sbjct: 179 ISATTATTPTTTQKKPR-----KPRQTKKTGPAAAAKAQASAQAQAQASAYNQMGSLGVP 233
Query: 289 TNSSSP 294
N+S
Sbjct: 234 QNTSML 239
Score = 30.8 bits (69), Expect = 3.0
Identities = 37/192 (19%), Positives = 55/192 (28%), Gaps = 11/192 (5%)
Query: 106 ANPSTNTDASPSTNTDANPSTNTDASPSTNT-DANPSTNTDASPSTNTDANPSTNTDASP 164
N N AS S +N S S + NT A +A+ + NT + +
Sbjct: 119 YNQLGNAGASASITKTSNGSDAATTSSTANTPAAAKVLKANAASAPNTTTGVGSAATTAA 178
Query: 165 STNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPS---TNTDANPS 221
+ T A T T P P P+ A S A S
Sbjct: 179 ISATTATTPTTTQKKPR-----KPRQTKKTGPAAAAKAQASAQAQAQASAYNQMGSLGVP 233
Query: 222 TNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDANLSNKLA 281
NT + N A+P N SP N + + N ++
Sbjct: 234 QNTSMLAQIPNPTPLMQLLNGVSPNNAMASPLNNM--SPMRNLNQMGNQNNGGQMTPSAN 291
Query: 282 DKKTNISTNSSS 293
+ N + +S
Sbjct: 292 NGNMNNQSRENS 303
Score = 30.4 bits (68), Expect = 3.7
Identities = 38/200 (19%), Positives = 59/200 (29%), Gaps = 8/200 (4%)
Query: 85 PASATVTTSNTTNQAITIVKHANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNT 144
A+ T +T+NT A + +A + NT + + T A+ T T P
Sbjct: 139 DAATTSSTANTPAAAKVLKANAASAPNTTTGVGSAATTAAISATTATTPTTTQKKPR--- 195
Query: 145 DASPSTNTDANPSTNTDASPSTNTDANPS---TNTDASPSTNTDANPSTNTDASPSTNTD 201
P P+ A S A S NT +
Sbjct: 196 --KPRQTKKTGPAAAAKAQASAQAQAQASAYNQMGSLGVPQNTSMLAQIPNPTPLMQLLN 253
Query: 202 ANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPS 261
N ASP N + N + + PS N + + + + + S S
Sbjct: 254 GVSPNNAMASPLNNMSPMRNLNQMGNQNNGGQMTPSANNGNMNNQSRENSMNQGMTPSAS 313
Query: 262 TNTDANPSTNTDANLSNKLA 281
N + N+S LA
Sbjct: 314 MINLNNITPANILNMSLNLA 333
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase
inhibitor.
Length = 670
Score = 32.0 bits (72), Expect = 1.3
Identities = 24/108 (22%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 186 ANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPS 245
N + A+ S T ++ S +T +PST+ A + A+PS +PST + P+
Sbjct: 569 TNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAGHLGSPPATPSKI--VSPST---SPPA 623
Query: 246 TNTDANPSTNTDASPSTNTDANPSTNTDANLSNKLADKKTNISTNSSS 293
++ + +T + S + + + ++++ K+A ++++S S S
Sbjct: 624 SHLGSPSTTPSSPESSIKVASTETASPESSI--KVASTESSVSMVSMS 669
Score = 30.4 bits (68), Expect = 3.7
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 5/103 (4%)
Query: 85 PASATVTTSNTTNQAITIVKHANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNT 144
P + N + T A S T +S S +T PST+ A + A PS
Sbjct: 556 PYIPGLFAGNPGSTNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAGHLGSPPATPSKI- 614
Query: 145 DASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDAN 187
SPST + P+++ + +T + S ++ + + +++
Sbjct: 615 -VSPST---SPPASHLGSPSTTPSSPESSIKVASTETASPESS 653
Score = 30.4 bits (68), Expect = 3.9
Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 106 ANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPS 165
N + A+ S T ++ S +T +PST+ A + A+PS +PST + P+
Sbjct: 569 TNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAGHLGSPPATPSKI--VSPST---SPPA 623
Query: 166 TNTDANPSTNTDASPSTNTDANPSTNTDAS 195
++ + +T + S + + + ++S
Sbjct: 624 SHLGSPSTTPSSPESSIKVASTETASPESS 653
Score = 30.4 bits (68), Expect = 3.9
Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 122 ANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPS 181
N + A+ S T ++ S +T +PST+ A + A+PS +PST + P+
Sbjct: 569 TNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAGHLGSPPATPSKI--VSPST---SPPA 623
Query: 182 TNTDANPSTNTDASPSTNTDANPSTNTDAS 211
++ + +T + S + + + ++S
Sbjct: 624 SHLGSPSTTPSSPESSIKVASTETASPESS 653
Score = 30.4 bits (68), Expect = 3.9
Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 138 ANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPS 197
N + A+ S T ++ S +T +PST+ A + A+PS +PST + P+
Sbjct: 569 TNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAGHLGSPPATPSKI--VSPST---SPPA 623
Query: 198 TNTDANPSTNTDASPSTNTDANPSTNTDAS 227
++ + +T + S + + + ++S
Sbjct: 624 SHLGSPSTTPSSPESSIKVASTETASPESS 653
Score = 30.4 bits (68), Expect = 3.9
Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 154 ANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPS 213
N + A+ S T ++ S +T +PST+ A + A+PS +PST + P+
Sbjct: 569 TNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAGHLGSPPATPSKI--VSPST---SPPA 623
Query: 214 TNTDANPSTNTDASPSTNTDANPSTNTDAS 243
++ + +T + S + + + ++S
Sbjct: 624 SHLGSPSTTPSSPESSIKVASTETASPESS 653
Score = 30.4 bits (68), Expect = 3.9
Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 170 ANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPS 229
N + A+ S T ++ S +T +PST+ A + A+PS +PST + P+
Sbjct: 569 TNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAGHLGSPPATPSKI--VSPST---SPPA 623
Query: 230 TNTDANPSTNTDASPSTNTDANPSTNTDAS 259
++ + +T + S + + + ++S
Sbjct: 624 SHLGSPSTTPSSPESSIKVASTETASPESS 653
>gnl|CDD|227430 COG5099, COG5099, RNA-binding protein of the Puf family,
translational repressor [Translation, ribosomal
structure and biogenesis].
Length = 777
Score = 31.6 bits (72), Expect = 1.5
Identities = 34/216 (15%), Positives = 79/216 (36%), Gaps = 17/216 (7%)
Query: 91 TTSNTTNQAITIVKHANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPST 150
T +N + + H+ S + + + N + N+ + + A+ S +
Sbjct: 5 TMNNLLPSIKSQLHHSKKSPPSSTTSQELMNGNSTPNSFSP--IPSKASSSATFTLNLPI 62
Query: 151 NTDAN----PSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPST 206
N N S+++ PS + S++T S S + S+ ++ S N
Sbjct: 63 NNSVNHKITSSSSSRRKPSGSWSVAISSSTSGSQSLLMELPSSSFNPSTSSRNKS----- 117
Query: 207 NTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDA 266
N+ S + +AN S +S +++ N++ P N + + ++ T ++
Sbjct: 118 NSALSSTQQGNANSSVTLSSSTASSM-----FNSNKLPLPNPNHS-NSATTNQSGSSFIN 171
Query: 267 NPSTNTDANLSNKLADKKTNISTNSSSPIVVTSEPS 302
P++++ L+N + +S
Sbjct: 172 TPASSSSQPLTNLVVSSIKRFPYLTSLSPFFNYLID 207
Score = 31.3 bits (71), Expect = 2.0
Identities = 45/196 (22%), Positives = 84/196 (42%), Gaps = 5/196 (2%)
Query: 84 PPASATVTTSNTTNQAITIVKHANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTN 143
P + + + + +++ T+ N S N + S+++ PS + + S++T + S
Sbjct: 40 PNSFSPIPSKASSSATFTLNLPINNSVNHKITSSSSSRRKPSGSWSVAISSSTSGSQSLL 99
Query: 144 TDASPSTNTDANPSTNTDASPSTNTDA-NPSTNTDASPSTNTDANPSTNTDASPSTNTDA 202
+ S+ + S N S ++T N +++ S ST + S N P+ N
Sbjct: 100 MELPSSSFNPSTSSRNKSNSALSSTQQGNANSSVTLSSSTASSMFNS-NKLPLPNPNHSN 158
Query: 203 NPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPST 262
+ +TN S NT A+ S+ + ++ T SP N +PS+ S +
Sbjct: 159 SATTNQSGSSFINTPASSSSQPLTNLVVSSIKRFPYLTSLSPFFNYLIDPSS---DSATA 215
Query: 263 NTDANPSTNTDANLSN 278
+ D +PS N NLS
Sbjct: 216 SADTSPSFNPPPNLSP 231
>gnl|CDD|227578 COG5253, MSS4, Phosphatidylinositol-4-phosphate 5-kinase [Signal
transduction mechanisms].
Length = 612
Score = 31.8 bits (72), Expect = 1.5
Identities = 28/186 (15%), Positives = 61/186 (32%), Gaps = 11/186 (5%)
Query: 159 NTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDA 218
+ + +P +T +S + ++AN T + ++ +N N D N D
Sbjct: 100 IVEIFKNNKDAVDPPNHTRSSGNNLSNANVKTLSAPV-GEHSRSNNPPNLD----QNLDT 154
Query: 219 NPSTNTDASP---STNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDAN 275
P ++ + S+ P++ + S N+ S N+ +
Sbjct: 155 EPESSISQWGELQLNPSGKTLSSQPSRKPTSENPKSESDNSKLPTSVNSPLPDKSLLKRT 214
Query: 276 LSNKLADKKTNISTNSSSPIVVTS---EPSIVSKDVVNVTKPTVTTSNTTNQAITIVKRE 332
LSN A++ + P + S V + +T++ +++
Sbjct: 215 LSNFWAERNSYNWKPLVYPSCPSEHIFSDSDVIIREDEPSSLIAFCLSTSDYRNKMMRLR 274
Query: 333 KSPDRD 338
S D
Sbjct: 275 DSETMD 280
Score = 29.9 bits (67), Expect = 5.8
Identities = 25/172 (14%), Positives = 53/172 (30%), Gaps = 16/172 (9%)
Query: 483 SSDPSSTSSNSDATSSSIDAIIDQIWDMRKFLNTNSNPDSSSDEIEILNTDSKSKPRSPE 542
P S S + + + R N +S + N S + +
Sbjct: 3 ERPPISRSGTGISMTHDKSTRPND----RSMSNDSSLCGLNQASDANGNEYSPNNK-VSK 57
Query: 543 VITISSTPSHSKSKSPNEVTTVNKTKKSKAKKIEEVVVLNTISPAKPVADITYENT-ISN 601
T S + SK ++ + +K K + + P+ +I N +
Sbjct: 58 KDTFSDQLHDALSKEFTLERERDRLQLNKRKY-----QAIRLQTSTPIVEIFKNNKDAVD 112
Query: 602 KFLNTNSNPDSSSDEVEILNT-----DSKSKPRSPEVITISSTPSNSKSKSP 648
+T S+ ++ S+ + S+S + + P +S S+
Sbjct: 113 PPNHTRSSGNNLSNANVKTLSAPVGEHSRSNNPPNLDQNLDTEPESSISQWG 164
>gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein
UL32. The large phosphorylated protein (UL32-like) of
herpes viruses is the polypeptide most frequently
reactive in immuno-blotting analyses with antisera when
compared with other viral proteins.
Length = 777
Score = 31.4 bits (71), Expect = 1.8
Identities = 29/245 (11%), Positives = 65/245 (26%), Gaps = 5/245 (2%)
Query: 121 DANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASP 180
P T++ + + S T + + + S + + +
Sbjct: 359 VDAPGTSSYLFEPGLSPSPNSGKEMPGILTTENLDLPLASTDSTEMDPEDKRGGAVKINN 418
Query: 181 STNTDANPSTNTDASPSTNTDANPST--NTDASPSTNTDANPS---TNTDASPSTNTDAN 235
S T A + A S P + + S ++ + PS +
Sbjct: 419 SGILAWGLKTPGLAVNDERSIAVSSDGITDVLDPPSPLRLHSSDKVIDSVSPPSKRRVSA 478
Query: 236 PSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDANLSNKLADKKTNISTNSSSPI 295
P++ D + A P ++ S + T++DA + + + I + SP
Sbjct: 479 PASRLDDAKRPEVTATPESSGSDSEGGASGREDETSSDAESVVSIKELRPRIGFINKSPP 538
Query: 296 VVTSEPSIVSKDVVNVTKPTVTTSNTTNQAITIVKREKSPDRDCVQVKADPPVSKTTSDK 355
+ S + V T + + + + +
Sbjct: 539 PKSPPKSRRTLIVALSLASPSTAGSPRPKPSLGKFVIGTDPFAFANTVRLTDNMRGGNGV 598
Query: 356 EPENK 360
K
Sbjct: 599 GSSVK 603
>gnl|CDD|165513 PHA03255, PHA03255, BDLF3; Provisional.
Length = 234
Score = 30.6 bits (68), Expect = 2.2
Identities = 35/161 (21%), Positives = 66/161 (40%), Gaps = 5/161 (3%)
Query: 112 TDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDAN 171
T + ST + N + T + + + + PSTN + +T T A +T S +T T +
Sbjct: 25 TSSGSSTASAGNVTGTTAVTTPSPSASGPSTNQSTTLTT-TSAPITTTAILSTNTTTVTS 83
Query: 172 PSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTN 231
T P+T+ + + T + T +T ST +N +T + ++ S
Sbjct: 84 TGTTVTPVPTTSNASTINVTTKVTAQNIT----ATEAGTGTSTGVTSNVTTRSSSTTSAT 139
Query: 232 TDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNT 272
T +T + S+ +N + T P+ + PS +
Sbjct: 140 TRITNATTLAPTLSSKGTSNATKTTAELPTVPDERQPSLSY 180
Score = 29.9 bits (66), Expect = 3.9
Identities = 33/154 (21%), Positives = 55/154 (35%), Gaps = 2/154 (1%)
Query: 87 SATVTTSNTTNQAITIVKHANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDA 146
S+T + N T + S + +T T + T A STNT ST T
Sbjct: 29 SSTASAGNVTGTTAVTTPSPSASGPSTNQSTTLTTTSAPITTTAILSTNTTTVTSTGTTV 88
Query: 147 SPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPST 206
+P T + N + T ST +N +T + ++ S T +T
Sbjct: 89 TPVPTTSNASTINVTTKVTAQNITA--TEAGTGTSTGVTSNVTTRSSSTTSATTRITNAT 146
Query: 207 NTDASPSTNTDANPSTNTDASPSTNTDANPSTNT 240
+ S+ +N + T P+ + PS +
Sbjct: 147 TLAPTLSSKGTSNATKTTAELPTVPDERQPSLSY 180
>gnl|CDD|218421 pfam05086, Dicty_REP, Dictyostelium (Slime Mold) REP protein. This
family consists of REP proteins from Dictyostelium
(Slime molds). REP protein is likely involved in
transcription regulation and control of DNA replication,
specifically amplification of plasmid at low copy
numbers. The formation of homomultimers may be required
for their regulatory activity.
Length = 910
Score = 31.3 bits (71), Expect = 2.2
Identities = 15/121 (12%), Positives = 35/121 (28%)
Query: 85 PASATVTTSNTTNQAITIVKHANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNT 144
+ + N+ N + + NT + +T T T S +
Sbjct: 228 ESDIEQISINSENIQRINSQPSKRPNNTTTTTTTTTTTTFQPRTRKRKSIDDHKLSLNQA 287
Query: 145 DASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANP 204
NT + +D S + + + + + ++ N SP+ +
Sbjct: 288 PEKFKNNTKPDDDPQSDFSDKGSRKSGSLKDVRIDNISCSVSHNGVNISISPTETIISVS 347
Query: 205 S 205
+
Sbjct: 348 N 348
Score = 31.3 bits (71), Expect = 2.3
Identities = 21/131 (16%), Positives = 43/131 (32%), Gaps = 4/131 (3%)
Query: 171 NPSTNTDASPSTNTDANPSTNTDASPSTNTD-ANPSTNTDASPSTNTDANPSTNTDASPS 229
P N + + + S N++ N+ + NT + +T T T S
Sbjct: 219 YPFVNLEVNE--SDIEQISINSENIQRINSQPSKRPNNTTTTTTTTTTTTFQPRTRKRKS 276
Query: 230 TNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDAN-LSNKLADKKTNIS 288
+ NT + +D S + + + + +S ++ NIS
Sbjct: 277 IDDHKLSLNQAPEKFKNNTKPDDDPQSDFSDKGSRKSGSLKDVRIDNISCSVSHNGVNIS 336
Query: 289 TNSSSPIVVTS 299
+ + I+ S
Sbjct: 337 ISPTETIISVS 347
Score = 30.6 bits (69), Expect = 3.6
Identities = 18/132 (13%), Positives = 40/132 (30%), Gaps = 3/132 (2%)
Query: 107 NPSTNTDASPSTNTDANPSTNTDASPSTNTD-ANPSTNTDASPSTNTDANPSTNTDASPS 165
P N + + + S N++ N+ + NT + +T T T S
Sbjct: 219 YPFVNLEVNE--SDIEQISINSENIQRINSQPSKRPNNTTTTTTTTTTTTFQPRTRKRKS 276
Query: 166 TNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTD 225
+ NT + +D S + + + + + ++ N
Sbjct: 277 IDDHKLSLNQAPEKFKNNTKPDDDPQSDFSDKGSRKSGSLKDVRIDNISCSVSHNGVNIS 336
Query: 226 ASPSTNTDANPS 237
SP+ + +
Sbjct: 337 ISPTETIISVSN 348
Score = 30.6 bits (69), Expect = 3.6
Identities = 18/132 (13%), Positives = 40/132 (30%), Gaps = 3/132 (2%)
Query: 123 NPSTNTDASPSTNTDANPSTNTDASPSTNTD-ANPSTNTDASPSTNTDANPSTNTDASPS 181
P N + + + S N++ N+ + NT + +T T T S
Sbjct: 219 YPFVNLEVNE--SDIEQISINSENIQRINSQPSKRPNNTTTTTTTTTTTTFQPRTRKRKS 276
Query: 182 TNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTD 241
+ NT + +D S + + + + + ++ N
Sbjct: 277 IDDHKLSLNQAPEKFKNNTKPDDDPQSDFSDKGSRKSGSLKDVRIDNISCSVSHNGVNIS 336
Query: 242 ASPSTNTDANPS 253
SP+ + +
Sbjct: 337 ISPTETIISVSN 348
Score = 30.6 bits (69), Expect = 3.6
Identities = 18/132 (13%), Positives = 40/132 (30%), Gaps = 3/132 (2%)
Query: 139 NPSTNTDASPSTNTDANPSTNTDASPSTNTD-ANPSTNTDASPSTNTDANPSTNTDASPS 197
P N + + + S N++ N+ + NT + +T T T S
Sbjct: 219 YPFVNLEVNE--SDIEQISINSENIQRINSQPSKRPNNTTTTTTTTTTTTFQPRTRKRKS 276
Query: 198 TNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTD 257
+ NT + +D S + + + + + ++ N
Sbjct: 277 IDDHKLSLNQAPEKFKNNTKPDDDPQSDFSDKGSRKSGSLKDVRIDNISCSVSHNGVNIS 336
Query: 258 ASPSTNTDANPS 269
SP+ + +
Sbjct: 337 ISPTETIISVSN 348
>gnl|CDD|236652 PRK10118, PRK10118, flagellar hook-length control protein;
Provisional.
Length = 408
Score = 31.0 bits (70), Expect = 2.3
Identities = 31/168 (18%), Positives = 50/168 (29%), Gaps = 16/168 (9%)
Query: 92 TSNTTNQAITIVKHANPSTNTDASPSTNTDANPSTNTDASPSTNTDA------------N 139
T ++ P+ T A + + +A D + + N
Sbjct: 96 TLPVITDEQSLSSPLTPALKTSALAALSKNAQKDEKADDLSDEDLASLSALFAMLPGQDN 155
Query: 140 PSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTN 199
+ DA + P+ T PS D + ++D T A T +
Sbjct: 156 TTPVADAPSTVLPAEKPTLLTKDMPSAPQDETHTLSSDEHEKGLTSA-QLTTAQPDDAPG 214
Query: 200 TDANPST--NTDASPSTNTDANPS-TNTDASPSTNTDANPSTNTDASP 244
T A P T +A + PS ASP+ T A+P
Sbjct: 215 TPAQPLTPLAAEAQAKAEVISTPSPVTAAASPTITPHQTQPLPTAAAP 262
Score = 30.2 bits (68), Expect = 4.1
Identities = 24/116 (20%), Positives = 35/116 (30%), Gaps = 10/116 (8%)
Query: 84 PPASATVTTSNTTNQAITIVKHANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTN 143
+ +T A P+ T PS D + ++D T A T
Sbjct: 154 DNTTPVADAPSTVLPA------EKPTLLTKDMPSAPQDETHTLSSDEHEKGLTSA-QLTT 206
Query: 144 TDASPSTNTDANPST--NTDASPSTNTDANPS-TNTDASPSTNTDANPSTNTDASP 196
+ T A P T +A + PS ASP+ T A+P
Sbjct: 207 AQPDDAPGTPAQPLTPLAAEAQAKAEVISTPSPVTAAASPTITPHQTQPLPTAAAP 262
Score = 29.8 bits (67), Expect = 5.2
Identities = 27/168 (16%), Positives = 52/168 (30%), Gaps = 14/168 (8%)
Query: 142 TNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDA------------NPS 189
S ++ P+ T A + + +A D + + N +
Sbjct: 98 PVITDEQSLSSPLTPALKTSALAALSKNAQKDEKADDLSDEDLASLSALFAMLPGQDNTT 157
Query: 190 TNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTD 249
DA + P+ T PS D + ++D T A T + T
Sbjct: 158 PVADAPSTVLPAEKPTLLTKDMPSAPQDETHTLSSDEHEKGLTSA-QLTTAQPDDAPGTP 216
Query: 250 ANPSTNTDASPSTNTDA-NPSTNTDANLSNKLADKKTNISTNSSSPIV 296
A P T A + + + A S + +T +++P++
Sbjct: 217 AQPLTPLAAEAQAKAEVISTPSPVTAAASPTITPHQTQPLPTAAAPVL 264
>gnl|CDD|148679 pfam07218, RAP1, Rhoptry-associated protein 1 (RAP-1). This family
consists of several rhoptry-associated protein 1 (RAP-1)
sequences which appear to be specific to Plasmodium
falciparum.
Length = 790
Score = 31.2 bits (70), Expect = 2.5
Identities = 17/106 (16%), Positives = 41/106 (38%), Gaps = 2/106 (1%)
Query: 171 NPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPST 230
+ S N DAS + + + + A+ D+ A+P N P
Sbjct: 85 DTSENGDASKKGHGKSRVRSASAAAILEEDDSKDDMEFKANP--NEAGKPGKPKGNQGEG 142
Query: 231 NTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDANL 276
++ + ++ S + A+ +++S + TD+ ++ + A +
Sbjct: 143 LASSSDGKSKASAKSGSKSASKHGESNSSDESATDSGKASASVAGI 188
Score = 30.8 bits (69), Expect = 2.7
Identities = 17/104 (16%), Positives = 40/104 (38%), Gaps = 2/104 (1%)
Query: 123 NPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPST 182
+ S N DAS + + + + A+ D+ A+P N P
Sbjct: 85 DTSENGDASKKGHGKSRVRSASAAAILEEDDSKDDMEFKANP--NEAGKPGKPKGNQGEG 142
Query: 183 NTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDA 226
++ + ++ S + A+ +++S + TD+ ++ + A
Sbjct: 143 LASSSDGKSKASAKSGSKSASKHGESNSSDESATDSGKASASVA 186
Score = 30.8 bits (69), Expect = 2.7
Identities = 17/104 (16%), Positives = 40/104 (38%), Gaps = 2/104 (1%)
Query: 139 NPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPST 198
+ S N DAS + + + + A+ D+ A+P N P
Sbjct: 85 DTSENGDASKKGHGKSRVRSASAAAILEEDDSKDDMEFKANP--NEAGKPGKPKGNQGEG 142
Query: 199 NTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDA 242
++ + ++ S + A+ +++S + TD+ ++ + A
Sbjct: 143 LASSSDGKSKASAKSGSKSASKHGESNSSDESATDSGKASASVA 186
Score = 30.8 bits (69), Expect = 2.7
Identities = 17/104 (16%), Positives = 40/104 (38%), Gaps = 2/104 (1%)
Query: 155 NPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPST 214
+ S N DAS + + + + A+ D+ A+P N P
Sbjct: 85 DTSENGDASKKGHGKSRVRSASAAAILEEDDSKDDMEFKANP--NEAGKPGKPKGNQGEG 142
Query: 215 NTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDA 258
++ + ++ S + A+ +++S + TD+ ++ + A
Sbjct: 143 LASSSDGKSKASAKSGSKSASKHGESNSSDESATDSGKASASVA 186
>gnl|CDD|224663 COG1749, FlgE, Flagellar hook protein FlgE [Cell motility and
secretion].
Length = 423
Score = 30.4 bits (69), Expect = 3.2
Identities = 27/172 (15%), Positives = 49/172 (28%), Gaps = 6/172 (3%)
Query: 85 PASATVTTSNTTNQAITIV--KHANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPST 142
TT I I T+ S S N ++ + +P TD
Sbjct: 131 NGVTGGINGGTTLLNIQIPNNNGLPAKATTNVSFSANLNSGAIVPSITAPFNPTDTATYN 190
Query: 143 NTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDA 202
+ ++ N T T T+ S + + D + A
Sbjct: 191 YKTSLTVYDSLGNKHTLDVYFVKTGTNTWQVYVLVKSQTGDPD-GTADTGTTFTLEFDPA 249
Query: 203 NPSTNTDASPSTNTDANPSTN-TDASPSTNTDANPST--NTDASPSTNTDAN 251
T+ + P+ N + N + + D ST +T S + + +
Sbjct: 250 GALTSGEPGPTEIVGPNVAVNGATLAQGISLDLTGSTQQSTGFSLTVASTQD 301
Score = 28.9 bits (65), Expect = 10.0
Identities = 27/171 (15%), Positives = 51/171 (29%), Gaps = 4/171 (2%)
Query: 110 TNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTD 169
A+ T +T + N T+ S S N ++ + +P TD
Sbjct: 126 QGYPANGVTGGINGGTTLLNIQIPNNNGLPAKATTNVSFSANLNSGAIVPSITAPFNPTD 185
Query: 170 ANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPS 229
+ ++ N T T T+ S + + D +
Sbjct: 186 TATYNYKTSLTVYDSLGNKHTLDVYFVKTGTNTWQVYVLVKSQTGDPD-GTADTGTTFTL 244
Query: 230 TNTDANPSTNTDASPSTNTDANPSTN-TDASPSTNTDANPST--NTDANLS 277
A T+ + P+ N + N + + D ST +T +L+
Sbjct: 245 EFDPAGALTSGEPGPTEIVGPNVAVNGATLAQGISLDLTGSTQQSTGFSLT 295
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau;
Validated.
Length = 830
Score = 30.6 bits (69), Expect = 3.2
Identities = 24/169 (14%), Positives = 48/169 (28%), Gaps = 6/169 (3%)
Query: 85 PASATVTTSNTTNQAITIVKHANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNT 144
PA + A+ V + +P A + A P+
Sbjct: 381 PAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPP------AAPAPPA 434
Query: 145 DASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANP 204
A + + + + + + DA P ++ + + +DA P + P
Sbjct: 435 TADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAP 494
Query: 205 STNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPS 253
++ + + AS A +A P T A P+
Sbjct: 495 RAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPA 543
Score = 30.2 bits (68), Expect = 4.1
Identities = 24/167 (14%), Positives = 45/167 (26%), Gaps = 3/167 (1%)
Query: 103 VKHANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDA 162
V S T + A + T A A P+ A
Sbjct: 380 VPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPP---AAPAPPATA 436
Query: 163 SPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPST 222
+ + + + + + DA P ++ + + +DA P + P
Sbjct: 437 DRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRA 496
Query: 223 NTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPS 269
++ + + AS A +A P T A P+
Sbjct: 497 AAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPA 543
>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23. All proteins
in this family for which functions are known are
components of a multiprotein complex used for targeting
nucleotide excision repair to specific parts of the
genome. In humans, Rad23 complexes with the XPC protein.
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 378
Score = 30.2 bits (68), Expect = 4.3
Identities = 11/77 (14%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 110 TNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTD 169
+ + + +P+ + A+P++ A+P++ + + ++ S +
Sbjct: 75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVE--EKSPSEESATATAP 132
Query: 170 ANPSTNTDASPSTNTDA 186
+PST+ +S S
Sbjct: 133 ESPSTSVPSSGSDAAST 149
Score = 30.2 bits (68), Expect = 4.3
Identities = 11/77 (14%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 126 TNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTD 185
+ + + +P+ + A+P++ A+P++ + + ++ S +
Sbjct: 75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVE--EKSPSEESATATAP 132
Query: 186 ANPSTNTDASPSTNTDA 202
+PST+ +S S
Sbjct: 133 ESPSTSVPSSGSDAAST 149
Score = 30.2 bits (68), Expect = 4.3
Identities = 11/77 (14%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 142 TNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTD 201
+ + + +P+ + A+P++ A+P++ + + ++ S +
Sbjct: 75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVE--EKSPSEESATATAP 132
Query: 202 ANPSTNTDASPSTNTDA 218
+PST+ +S S
Sbjct: 133 ESPSTSVPSSGSDAAST 149
Score = 30.2 bits (68), Expect = 4.3
Identities = 11/77 (14%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 158 TNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTD 217
+ + + +P+ + A+P++ A+P++ + + ++ S +
Sbjct: 75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVE--EKSPSEESATATAP 132
Query: 218 ANPSTNTDASPSTNTDA 234
+PST+ +S S
Sbjct: 133 ESPSTSVPSSGSDAAST 149
Score = 30.2 bits (68), Expect = 4.3
Identities = 11/77 (14%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 174 TNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTD 233
+ + + +P+ + A+P++ A+P++ + + ++ S +
Sbjct: 75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVE--EKSPSEESATATAP 132
Query: 234 ANPSTNTDASPSTNTDA 250
+PST+ +S S
Sbjct: 133 ESPSTSVPSSGSDAAST 149
Score = 30.2 bits (68), Expect = 4.3
Identities = 11/77 (14%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 190 TNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTD 249
+ + + +P+ + A+P++ A+P++ + + ++ S +
Sbjct: 75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVE--EKSPSEESATATAP 132
Query: 250 ANPSTNTDASPSTNTDA 266
+PST+ +S S
Sbjct: 133 ESPSTSVPSSGSDAAST 149
>gnl|CDD|220401 pfam09786, CytochromB561_N, Cytochrome B561, N terminal. Members
of this family are found in the N terminal region of
cytochrome B561, as well as in various other putative
uncharacterized proteins.
Length = 559
Score = 30.1 bits (68), Expect = 5.0
Identities = 32/165 (19%), Positives = 58/165 (35%), Gaps = 14/165 (8%)
Query: 450 PKPFPEQPCPPGELESPSVPSSSDPIESLSIPSSSDPSSTSSNSDATSSSIDAIIDQIWD 509
P + P P VP S +S S +S + S++ S +
Sbjct: 118 KSPPASKTSTPMNTSEPLVPGHSSFSDSPSRSASPSRKFSPSSTIQQSPQLTPSN----K 173
Query: 510 MRKFLNTNSNPDSSSDEIEILNTDSKSKPRSPEVITISSTPSHSKSKSPNEVTTVNKTKK 569
++ +P SS + ++ ++S R SS + S ++TT K +
Sbjct: 174 PASPSSSYQSPSYSSSLGPVNSSGNRSNLR-------SSPWALRSSGDKKDITTDEKYLE 226
Query: 570 SKAKKIEEVVVLNTISPAK---PVADITYENTISNKFLNTNSNPD 611
+ +++E + T S K P I + S F N + N
Sbjct: 227 TFLAEVDEEQHMITSSAGKNATPPETINSFGSSSPSFWNYSRNAS 271
>gnl|CDD|131944 TIGR02898, spore_YhcN_YlaJ, sporulation lipoprotein, YhcN/YlaJ
family. YhcN and YlaJ are predicted lipoproteins that
have been detected as spore proteins but not vegetative
proteins in Bacillus subtilis. Both appear to be
expressed under control of the RNA polymerase sigma-G
factor. The YlaJ-like members of this family have a
low-complexity, strongly acidic 40-residue C-terminal
domain that is not included in the seed alignment for
this model. A portion of the low-complexity region
between the lipoprotein signal sequence and the main
conserved region of the protein family was also excised
from the seed alignment [Cellular processes, Sporulation
and germination].
Length = 158
Score = 28.9 bits (65), Expect = 6.2
Identities = 19/105 (18%), Positives = 42/105 (40%), Gaps = 2/105 (1%)
Query: 242 ASPSTNTDANPSTNTDASPSTNTDANPSTNTDANLSNKLADKKTNISTNSSSPIVVTSEP 301
+P N + + + NT + + ++++++A + + + +V+T
Sbjct: 21 KNPPNNNVGETNVMSKNNNGMNTTNDTNDGDLYDVADEIASEAAKVKGVKDATVVITGNY 80
Query: 302 SIVSKDVVNVTKPTVTTSNTTNQAITIVKREKSPDRDCVQVKADP 346
+ V D+ N + +VT A T+ + V V ADP
Sbjct: 81 AYVGVDLTNGLEGSVTDELKEKVAETVKSTDNRIAN--VYVSADP 123
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau;
Validated.
Length = 647
Score = 29.4 bits (67), Expect = 8.4
Identities = 13/114 (11%), Positives = 27/114 (23%), Gaps = 5/114 (4%)
Query: 72 SPDRDCVQVKADPPASATVTTSNTTNQAITIVKHANPSTNTDASPSTNTDANPSTNTDAS 131
P+ A AT + P++ +P+ S A
Sbjct: 367 EPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAAR 426
Query: 132 PSTNTDANPSTNTDASPSTNTDANPSTN-----TDASPSTNTDANPSTNTDASP 180
+ + P+ + A P + P+ + +A
Sbjct: 427 QQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYR 480
>gnl|CDD|191251 pfam05283, MGC-24, Multi-glycosylated core protein 24 (MGC-24).
This family consists of several MGC-24 (or Cd164
antigen) proteins from eukaryotic organisms.
MGC-24/CD164 is a sialomucin expressed in many normal
and cancerous tissues. In humans, soluble and
transmembrane forms of MGC-24 are produced by
alternative splicing.
Length = 187
Score = 28.4 bits (63), Expect = 8.9
Identities = 13/78 (16%), Positives = 25/78 (32%)
Query: 120 TDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDAS 179
P + + + TD+ T P+ +T T + + +
Sbjct: 81 GPEEPGYCSSQAEVVKSGCQIYNTTDSCSVATTTPVPTNSTAKPTITPSPTTSHHHVTSE 140
Query: 180 PSTNTDANPSTNTDASPS 197
P TNT P++ D +
Sbjct: 141 PKTNTTVTPTSQPDRKST 158
Score = 28.4 bits (63), Expect = 8.9
Identities = 13/78 (16%), Positives = 25/78 (32%)
Query: 136 TDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDAS 195
P + + + TD+ T P+ +T T + + +
Sbjct: 81 GPEEPGYCSSQAEVVKSGCQIYNTTDSCSVATTTPVPTNSTAKPTITPSPTTSHHHVTSE 140
Query: 196 PSTNTDANPSTNTDASPS 213
P TNT P++ D +
Sbjct: 141 PKTNTTVTPTSQPDRKST 158
Score = 28.4 bits (63), Expect = 8.9
Identities = 13/78 (16%), Positives = 25/78 (32%)
Query: 152 TDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDAS 211
P + + + TD+ T P+ +T T + + +
Sbjct: 81 GPEEPGYCSSQAEVVKSGCQIYNTTDSCSVATTTPVPTNSTAKPTITPSPTTSHHHVTSE 140
Query: 212 PSTNTDANPSTNTDASPS 229
P TNT P++ D +
Sbjct: 141 PKTNTTVTPTSQPDRKST 158
Score = 28.4 bits (63), Expect = 8.9
Identities = 13/78 (16%), Positives = 25/78 (32%)
Query: 168 TDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDAS 227
P + + + TD+ T P+ +T T + + +
Sbjct: 81 GPEEPGYCSSQAEVVKSGCQIYNTTDSCSVATTTPVPTNSTAKPTITPSPTTSHHHVTSE 140
Query: 228 PSTNTDANPSTNTDASPS 245
P TNT P++ D +
Sbjct: 141 PKTNTTVTPTSQPDRKST 158
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 29.0 bits (65), Expect = 10.0
Identities = 22/115 (19%), Positives = 34/115 (29%), Gaps = 10/115 (8%)
Query: 188 PSTNTDASPSTN--TDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPS 245
DAS P A+ PS ASPS + + + + +
Sbjct: 363 TQKGDDASGGRGPKQHIKPVFTQPAAAP-----QPSAAAAASPSPSQSSAAAQPSAPQSA 417
Query: 246 TNTDANPSTNTDASPSTNTDANPSTNT--DANLSNKLADKKTNISTNSSSPIVVT 298
T P T + P+ NP + + +KK +S SS
Sbjct: 418 TQPAGTPPTVSVDPPAA-VPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTL 471
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.300 0.115 0.309
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 31,888,764
Number of extensions: 2854226
Number of successful extensions: 5453
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3586
Number of HSP's successfully gapped: 681
Length of query: 703
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 599
Effective length of database: 6,324,786
Effective search space: 3788546814
Effective search space used: 3788546814
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 63 (28.2 bits)