RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11148
(703 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.9 bits (139), Expect = 8e-09
Identities = 74/526 (14%), Positives = 146/526 (27%), Gaps = 183/526 (34%)
Query: 282 DKKTNISTNSSSPIVVTSEPSIVS----KDVVNVTKPTVTTSNTTNQAITIVKREKSPDR 337
D +T I+ E + V KDV ++ K ++ + I+ S D
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH----IIM---SKDA 60
Query: 338 --------DCVQVKADPPVSK-----------------TTSDKEPENKCRFFSTNFKKLL 372
+ K + V K T ++P R + +L
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 373 QLVPRIPPGTVLPYKHVQTR-ETRTQSRNARWRNTAARKKLESHFRDY---HFRMFSTPI 428
V +R + + R A +L + +
Sbjct: 121 NDNQVFAKYNV-------SRLQPYLKLRQAL-------LELRPA--KNVLID-GVLGS-- 161
Query: 429 SVKEREGKKPMVRSLVSIRVFPKPFPEQPCPP--------GELESPSVPSSSDPIESLSI 480
GK + + + Q SP + + ++ L
Sbjct: 162 ------GKTWVALDVC------LSYKVQCKMDFKIFWLNLKNCNSPE--TVLEMLQKLLY 207
Query: 481 PSSSDPSSTSSNSDATSSSIDA-------------------IIDQIWDMR---------K 512
+ +S S +S I + ++ + + + K
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK 267
Query: 513 FLNT---NSNPDS------------------SSDEIE-----ILNTDSKSKPRSPEVITI 546
L T D + DE++ L+ + PR EV+T
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR--EVLTT 325
Query: 547 SSTPSH----SKSKSPNEVTTVNKTKKSKAKKIEEVV--VLNTISPA--KPVADITYEN- 597
+ P ++S + + T + K K+ ++ LN + PA + + ++
Sbjct: 326 N--PRRLSIIAESIR-DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM----FDRL 378
Query: 598 TISNKFLNTNSN-P---------DSSSDEVE-ILNTDSKS----KPRSPEVITISSTPSN 642
++ F +++ P D +V ++N K K I+I S
Sbjct: 379 SV---F-PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 643 SKSKSPNEVTTVNKTKKSKAKKIEEVVVLKTISP---AKPVADITY 685
K K NE +++ ++ + KT P D Y
Sbjct: 435 LKVKLENE-YALHR------SIVDHYNIPKTFDSDDLIPPYLD-QY 472
>1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy,
helical reconstruction, structural protein; 4.00A
{Salmonella typhimurium} SCOP: e.32.1.1 PDB: 3a5x_A
Length = 494
Score = 50.1 bits (119), Expect = 2e-06
Identities = 25/254 (9%), Positives = 58/254 (22%)
Query: 76 DCVQVKADPPASATVTTSNTTNQAITIVKHANPSTNTDASPSTNTDANPSTNTDASPSTN 135
D Q+ + T+ + T + T A ++ A+ + +
Sbjct: 158 DLKQINSQTLGLDTLNVQQKYKVSDTAATVTGYADTTIALDNSTFKASATGLGGTDQKID 217
Query: 136 TDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDAS 195
D T + T + + N ++
Sbjct: 218 GDLKFDDTTGKYYAKVTVTGGTGKDGYYEVSVDKTNGEVTLAGGATSPLTGGLPATATED 277
Query: 196 PSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTN 255
AN + T + + T+ + A + + + N
Sbjct: 278 VKNVQVANADLTEAKAALTAAGVTGTASVVKMSYTDNNGKTIDGGLAVKVGDDYYSATQN 337
Query: 256 TDASPSTNTDANPSTNTDANLSNKLADKKTNISTNSSSPIVVTSEPSIVSKDVVNVTKPT 315
D S S NT + + + + + S + +
Sbjct: 338 KDGSISINTTKYTADDGTSKTALNKLGGADGKTEVVSIGGKTYAASKAEGHNFKAQPDLA 397
Query: 316 VTTSNTTNQAITIV 329
+ TT + +
Sbjct: 398 EAAATTTENPLQKI 411
>1io1_A Phase 1 flagellin; beta-folium, structural protein; 2.00A
{Salmonella typhimurium} SCOP: e.32.1.1
Length = 398
Score = 42.7 bits (99), Expect = 3e-04
Identities = 21/255 (8%), Positives = 54/255 (21%), Gaps = 3/255 (1%)
Query: 78 VQVKADPPASATVTTSNTTNQAITIVKHANPSTNTDASPSTNTDANPSTNTDASPSTNTD 137
+ +K + + T N + A + D + + + ++ T +
Sbjct: 105 IDLKQINSQTLGLDTLNVQQKYKVSDTAATVTGYADTTIALDNSTFKASATGLGGTDQKI 164
Query: 138 ANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPS 197
D + + T + + T +
Sbjct: 165 DGDLKFDDTTGKYYAKVTVTGGTGKDGYYEVSVDKTNGEVTLAGGATSPLTGGLPATATE 224
Query: 198 TNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTD 257
+ + A T T + + N D + + + T
Sbjct: 225 DVKNVQVANADLTEAKAALTAAGVTGTASVVKMSYTDNNGKTIDGGLAVKVGDDYYSATQ 284
Query: 258 ASPSTNTDANPSTNTDANLSNKLADKKTNISTNS---SSPIVVTSEPSIVSKDVVNVTKP 314
+ + D S +K + S + +
Sbjct: 285 NKDGSISINTTKYTADDGTSKTALNKLGGADGKTEVVSIGGKTYAASKAEGHNFKAQPDL 344
Query: 315 TVTTSNTTNQAITIV 329
+ TT + +
Sbjct: 345 AEAAATTTENPLQKI 359
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 38.4 bits (89), Expect = 0.009
Identities = 13/96 (13%), Positives = 25/96 (26%), Gaps = 2/96 (2%)
Query: 106 ANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPS 165
A P++ +P + A+P+ T NP+ A +
Sbjct: 3 AAPTS--PGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDN 60
Query: 166 TNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTD 201
A +T + + + P T
Sbjct: 61 ATVAAGHATLREHLRDIKAENTDANFYVCPPPTGAT 96
Score = 38.4 bits (89), Expect = 0.009
Identities = 13/96 (13%), Positives = 25/96 (26%), Gaps = 2/96 (2%)
Query: 122 ANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPS 181
A P++ +P + A+P+ T NP+ A +
Sbjct: 3 AAPTS--PGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDN 60
Query: 182 TNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTD 217
A +T + + + P T
Sbjct: 61 ATVAAGHATLREHLRDIKAENTDANFYVCPPPTGAT 96
Score = 38.4 bits (89), Expect = 0.009
Identities = 13/96 (13%), Positives = 25/96 (26%), Gaps = 2/96 (2%)
Query: 138 ANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPS 197
A P++ +P + A+P+ T NP+ A +
Sbjct: 3 AAPTS--PGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDN 60
Query: 198 TNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTD 233
A +T + + + P T
Sbjct: 61 ATVAAGHATLREHLRDIKAENTDANFYVCPPPTGAT 96
Score = 38.4 bits (89), Expect = 0.009
Identities = 13/96 (13%), Positives = 25/96 (26%), Gaps = 2/96 (2%)
Query: 154 ANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPS 213
A P++ +P + A+P+ T NP+ A +
Sbjct: 3 AAPTS--PGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDN 60
Query: 214 TNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTD 249
A +T + + + P T
Sbjct: 61 ATVAAGHATLREHLRDIKAENTDANFYVCPPPTGAT 96
Score = 38.4 bits (89), Expect = 0.009
Identities = 13/96 (13%), Positives = 25/96 (26%), Gaps = 2/96 (2%)
Query: 170 ANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPS 229
A P++ +P + A+P+ T NP+ A +
Sbjct: 3 AAPTS--PGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDN 60
Query: 230 TNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTD 265
A +T + + + P T
Sbjct: 61 ATVAAGHATLREHLRDIKAENTDANFYVCPPPTGAT 96
Score = 37.6 bits (87), Expect = 0.016
Identities = 11/91 (12%), Positives = 23/91 (25%)
Query: 210 ASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPS 269
SP T A + + P+T P + P T P+ + +
Sbjct: 6 TSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAA 65
Query: 270 TNTDANLSNKLADKKTNISTNSSSPIVVTSE 300
+ + + + P +
Sbjct: 66 GHATLREHLRDIKAENTDANFYVCPPPTGAT 96
Score = 36.5 bits (84), Expect = 0.036
Identities = 10/73 (13%), Positives = 18/73 (24%)
Query: 194 ASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPS 253
SP T A + + P+T P + P T P+ + +
Sbjct: 6 TSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAA 65
Query: 254 TNTDASPSTNTDA 266
+
Sbjct: 66 GHATLREHLRDIK 78
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 37.4 bits (86), Expect = 0.016
Identities = 22/137 (16%), Positives = 40/137 (29%), Gaps = 4/137 (2%)
Query: 105 HANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASP 164
H + + D ST +++ ++ T A PS + P + +
Sbjct: 5 HHHHVDDDDKMFSTQVNSSLTSPTGRGSM----AAPSLHPSLGPGIGSPGQLHSPISTLS 60
Query: 165 STNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNT 224
S P + +SP + T ST + S S S + N
Sbjct: 61 SPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNG 120
Query: 225 DASPSTNTDANPSTNTD 241
+ N ++ T
Sbjct: 121 VLKVPAHPSGNMASFTK 137
Score = 36.2 bits (83), Expect = 0.040
Identities = 21/129 (16%), Positives = 35/129 (27%), Gaps = 2/129 (1%)
Query: 129 DASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANP 188
D +T N S + + A PS + P + + S P
Sbjct: 11 DDDKMFSTQVNSSLTSPTGRGSM--AAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGP 68
Query: 189 STNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNT 248
+ +SP + T ST + S S S + N +
Sbjct: 69 PFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHP 128
Query: 249 DANPSTNTD 257
N ++ T
Sbjct: 129 SGNMASFTK 137
Score = 36.2 bits (83), Expect = 0.040
Identities = 21/129 (16%), Positives = 35/129 (27%), Gaps = 2/129 (1%)
Query: 145 DASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANP 204
D +T N S + + A PS + P + + S P
Sbjct: 11 DDDKMFSTQVNSSLTSPTGRGSM--AAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGP 68
Query: 205 STNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNT 264
+ +SP + T ST + S S S + N +
Sbjct: 69 PFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHP 128
Query: 265 DANPSTNTD 273
N ++ T
Sbjct: 129 SGNMASFTK 137
Score = 32.8 bits (74), Expect = 0.37
Identities = 19/119 (15%), Positives = 31/119 (26%), Gaps = 2/119 (1%)
Query: 161 DASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANP 220
D +T N S + + A PS + P + + S P
Sbjct: 11 DDDKMFSTQVNSSLTSPTGRGSM--AAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGP 68
Query: 221 STNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDANLSNK 279
+ +SP + T ST + S S S + N +
Sbjct: 69 PFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAH 127
Score = 30.1 bits (67), Expect = 3.2
Identities = 18/130 (13%), Positives = 40/130 (30%), Gaps = 7/130 (5%)
Query: 177 DASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANP 236
D +T N S + + A PS + P + + S P
Sbjct: 11 DDDKMFSTQVNSSLTSPTGRGSM--AAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGP 68
Query: 237 STNTDASPSTNTDANPSTN-----TDASPSTNTDANPSTNTDANLSNKLADKKTNISTNS 291
+ +SP + T + SP ++ NP ++++ + + +
Sbjct: 69 PFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHP 128
Query: 292 SSPIVVTSEP 301
S + ++
Sbjct: 129 SGNMASFTKH 138
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.029
Identities = 45/233 (19%), Positives = 76/233 (32%), Gaps = 73/233 (31%)
Query: 233 DANPSTNTDASPSTNTDANPSTNTDASP--STNTDANPST-NTDANLSNK-L-ADKKTNI 287
+A P NT PS D+ + SP S ++ N +N L A K+ I
Sbjct: 312 EAYP--NTSLPPSILEDSLENNEGVPSPMLSI-SNLTQEQVQDYVNKTNSHLPAGKQVEI 368
Query: 288 S-TNSSSPIVVTSEPSIVSKDVVNVTKPTVTTSNTTNQAITIVKREKSPDRDCVQVKADP 346
S N + +VV+ P S +N+T +++ K+P Q +
Sbjct: 369 SLVNGAKNLVVSGPPQ--SLYGLNLT----------------LRKAKAPS-GLDQSRI-- 407
Query: 347 PVSKTTSDKEPENKCRFFSTNFKKLLQLVPRIPPGTVLPYKH-------VQTRETRTQSR 399
P S+ ++ + FS F L P P+ H
Sbjct: 408 PFSE----RKLK-----FSNRF--L--------PVAS-PF-HSHLLVPASDLINKDLVKN 446
Query: 400 NARWRNTAARKKLES---HFRD-YHFRMFSTPISVKEREGKKPMVRSLVSIRV 448
N + K ++ D R+ S IS + +V ++ + V
Sbjct: 447 NVSFN----AKDIQIPVYDTFDGSDLRVLSGSIS-------ERIVDCIIRLPV 488
>3k8w_A Flagellin homolog; flagellum, structural protein, bacterial
flagellu; 1.70A {Sphingomonas SP} PDB: 2zbi_A 3k8v_A
Length = 326
Score = 35.7 bits (82), Expect = 0.044
Identities = 15/149 (10%), Positives = 42/149 (28%)
Query: 181 STNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNT 240
+ S +A ++ + T + + T + + D
Sbjct: 132 NAGETIGVSKIMNAQTASLGGSLTRTTSTIDATDLTKYDTAMAAGDLTINGVDVGKIDAA 191
Query: 241 DASPSTNTDANPSTNTDASPSTNTDANPSTNTDANLSNKLADKKTNISTNSSSPIVVTSE 300
+ + N +S + + T L++ A + +++ +
Sbjct: 192 STAQERAAQLTEAINRVSSQTNVGASYDKTTGQVTLTSNAAIAVAGAANDATVAGWANNA 251
Query: 301 PSIVSKDVVNVTKPTVTTSNTTNQAITIV 329
+ + + TV++ Q IT +
Sbjct: 252 TTGTATTTTGINSLTVSSFTNAQQTITQI 280
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.7 bits (71), Expect = 0.46
Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 23/81 (28%)
Query: 356 EPEN--KCRFFSTNFKKLLQLVPRIPPGTVLPYKHVQTRETRTQSRNARWRNTAARKKLE 413
EPE+ K R +K R+ Q + ++ WR A+K LE
Sbjct: 83 EPESIRKWR---EEQRK------RL-----------QELDAASKVMEQEWREK-AKKDLE 121
Query: 414 SHFRDYHFRMFSTPISVKERE 434
+ ++ I+ + +
Sbjct: 122 EWNQRQSEQVEKNKINNRIAD 142
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 32.4 bits (73), Expect = 0.63
Identities = 27/185 (14%), Positives = 74/185 (40%), Gaps = 6/185 (3%)
Query: 84 PPASATVTTSNTTNQAITIVKHANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTN 143
P S T + + T+ + + + T+ SP++ + + S + + + + +PS +
Sbjct: 1554 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1613
Query: 144 TDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDAN 203
+ + T + S + + T+ +P++ + + S + + SPS +
Sbjct: 1614 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSY----S 1669
Query: 204 PSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTN 263
P++ + + S + +P++ + + S N + + SP + + + N
Sbjct: 1670 PTSPSYSPTSPSY--SPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQKHN 1727
Query: 264 TDANP 268
+ N
Sbjct: 1728 ENENS 1732
>1q1q_A SULT2B1A, sulfotransferase family, cytosolic, 2B, member 1 isoform
A; pregnenolone, PAP; HET: A3P NHE; 2.91A {Homo sapiens}
SCOP: c.37.1.5
Length = 350
Score = 31.4 bits (71), Expect = 0.90
Identities = 9/60 (15%), Positives = 23/60 (38%)
Query: 111 NTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDA 170
P+ D +P + P + + P + + + S + P+++ SP ++
Sbjct: 285 QMRGMPTFPWDEDPEEDGSPDPEPSPEPEPKPSLEPNTSLEREPRPNSSPSPSPGQASET 344
Score = 31.4 bits (71), Expect = 0.90
Identities = 9/60 (15%), Positives = 23/60 (38%)
Query: 127 NTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDA 186
P+ D +P + P + + P + + + S + P+++ SP ++
Sbjct: 285 QMRGMPTFPWDEDPEEDGSPDPEPSPEPEPKPSLEPNTSLEREPRPNSSPSPSPGQASET 344
Score = 31.4 bits (71), Expect = 0.90
Identities = 9/60 (15%), Positives = 23/60 (38%)
Query: 143 NTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDA 202
P+ D +P + P + + P + + + S + P+++ SP ++
Sbjct: 285 QMRGMPTFPWDEDPEEDGSPDPEPSPEPEPKPSLEPNTSLEREPRPNSSPSPSPGQASET 344
Score = 31.4 bits (71), Expect = 0.90
Identities = 9/60 (15%), Positives = 23/60 (38%)
Query: 159 NTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDA 218
P+ D +P + P + + P + + + S + P+++ SP ++
Sbjct: 285 QMRGMPTFPWDEDPEEDGSPDPEPSPEPEPKPSLEPNTSLEREPRPNSSPSPSPGQASET 344
Score = 31.4 bits (71), Expect = 0.90
Identities = 9/60 (15%), Positives = 23/60 (38%)
Query: 175 NTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDA 234
P+ D +P + P + + P + + + S + P+++ SP ++
Sbjct: 285 QMRGMPTFPWDEDPEEDGSPDPEPSPEPEPKPSLEPNTSLEREPRPNSSPSPSPGQASET 344
Score = 31.4 bits (71), Expect = 0.90
Identities = 9/60 (15%), Positives = 23/60 (38%)
Query: 191 NTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDA 250
P+ D +P + P + + P + + + S + P+++ SP ++
Sbjct: 285 QMRGMPTFPWDEDPEEDGSPDPEPSPEPEPKPSLEPNTSLEREPRPNSSPSPSPGQASET 344
Score = 31.4 bits (71), Expect = 0.90
Identities = 9/60 (15%), Positives = 23/60 (38%)
Query: 207 NTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDA 266
P+ D +P + P + + P + + + S + P+++ SP ++
Sbjct: 285 QMRGMPTFPWDEDPEEDGSPDPEPSPEPEPKPSLEPNTSLEREPRPNSSPSPSPGQASET 344
Score = 29.1 bits (65), Expect = 5.6
Identities = 7/48 (14%), Positives = 20/48 (41%)
Query: 107 NPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDA 154
+P + P + + P + + + S + P+++ SP ++
Sbjct: 297 DPEEDGSPDPEPSPEPEPKPSLEPNTSLEREPRPNSSPSPSPGQASET 344
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 31.2 bits (70), Expect = 0.93
Identities = 13/102 (12%), Positives = 34/102 (33%), Gaps = 25/102 (24%)
Query: 418 DYHFRMFSTPISVKEREGKKPMVRSLVSIRVFPKPFPEQPCPPGELESPSVPS------S 471
+Y + + ++ P++R EL +
Sbjct: 123 NYSSEVKENSVDSDDKAKVPPLIR-------IVSGL--------ELSDTKQKGKKFLVIA 167
Query: 472 SDPIESLS--IPSSSDPSSTSSNSDATSSSIDAIIDQI--WD 509
+P E+++ +P + S +++ D + +D + + WD
Sbjct: 168 YEPFENIAIELPPNEILFSENNDMDNNNDGVDELNKKCTFWD 209
>1wxr_A Haemoglobin protease; hemoglobine protease, autotransporter, beta
helix, heme uptake, spate, hydrolase; 2.20A {Escherichia
coli} PDB: 3ak5_A
Length = 1048
Score = 31.2 bits (69), Expect = 1.5
Identities = 25/253 (9%), Positives = 68/253 (26%), Gaps = 1/253 (0%)
Query: 47 VNVTKPTVTTSNTTNQAITIVKREKSPDRDCVQVKADPPASATVTTSNTTNQAITIVKHA 106
T T+ T + ++ + D V D ++T N +
Sbjct: 696 TAFTLEEGTSVATKDADKSVFNGTVNLDNQSVLNINDIFNGGIQANNSTVNISSDSAVLG 755
Query: 107 NPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPST 166
N + + A ++ + S ++ + + ++ P + A
Sbjct: 756 NSTLTSTALNLNKGANALASQSFVSDGPVNISDATLSLNSRPDEVSHTLLPVYDYAGSWN 815
Query: 167 NTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDAS-PSTNTDANPSTNTD 225
+ N + + N + + +P + + + +
Sbjct: 816 LKGDDARLNVGPYSMLSGNINVQDKGTVTLGGEGELSPDLTLQNQMLYSLFNGYRNIWSG 875
Query: 226 ASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDANLSNKLADKKT 285
+ + + + + + +T N N + +T T NL +
Sbjct: 876 SLNAPDATVSMTDTQWSMNGNSTAGNMKLNRTIVGFNGGTSPFTTLTTDNLDAVQSAFVM 935
Query: 286 NISTNSSSPIVVT 298
N + +V+
Sbjct: 936 RTDLNKADKLVIN 948
Score = 28.8 bits (63), Expect = 7.5
Identities = 27/242 (11%), Positives = 58/242 (23%), Gaps = 3/242 (1%)
Query: 87 SATVTTSNTTNQAITIVKHANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDA 146
S+ S +T + NP T + D N ++ T N
Sbjct: 412 SSVNIASGRPTVVLTDERQVNPDTVSWGYRGGTLDVNGNSLTFHQLKAADYGAVLANNVD 471
Query: 147 SPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPST 206
+T T A + S A + + TD +
Sbjct: 472 KRATITL---DYALRADKVALNGWSESGKGTAGNLYKYNNPYTNTTDYFILKQSTYGYFP 528
Query: 207 NTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDA 266
+S +T S + N + + + + D
Sbjct: 529 TDQSSNATWEFVGHSQGDAQKLVADRFNTAGYLFHGQLKGNLNVDNRLPEGVTGALVMDG 588
Query: 267 NPSTNTDANLSNKLADKKTNISTNSSSPIVVTSEPSIVSKDVVNVTKPTVTTSNTTNQAI 326
+ N + + ++ + V + + V + + + N++
Sbjct: 589 AADISGTFTQENGRLTLQGHPVIHAYNTQSVADKLAASGDHSVLTQPTSFSQEDWENRSF 648
Query: 327 TI 328
T
Sbjct: 649 TF 650
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell
adhesion, disease mutation, dwarfism, EGF-like domain,
glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo
sapiens}
Length = 551
Score = 30.3 bits (68), Expect = 2.6
Identities = 16/152 (10%), Positives = 38/152 (25%), Gaps = 9/152 (5%)
Query: 119 NTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDA 178
+ D P+ A ++ D DA + + + D + D
Sbjct: 236 SRDNCPTVPNSAQEDSDHDGQG----DACDDDDDNDGVPDSRDNCRLVPNPGQEDADRDG 291
Query: 179 SP-STNTDANPSTNT---DASPSTNTDANPSTNTDASPSTNTDANPSTN-TDASPSTNTD 233
D + D P + + + + + + +
Sbjct: 292 VGDVCQDDFDADKVVDKIDVCPENAEVTLTDFRAFQTVVLDPEGDAQIDPNWVVLNQGRE 351
Query: 234 ANPSTNTDASPSTNTDANPSTNTDASPSTNTD 265
+ N+D + A + + + NT
Sbjct: 352 IVQTMNSDPGLAVGYTAFNGVDFEGTFHVNTV 383
>3g7n_A Lipase; hydrolase fold, hydrolase; HET: 1PE; 1.30A {Penicillium
expansum}
Length = 258
Score = 29.5 bits (66), Expect = 3.2
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 374 LVPRIPPGTVLPYKHVQT 391
VP + ++ +KH T
Sbjct: 189 GVPNMYSSPLVNFKHYGT 206
>3tew_A Protective antigen; protein transport, toxin; HET: MXE; 1.45A
{Bacillus anthracis} PDB: 3tex_A 3tey_A 3q8b_A 3q8a_A
1t6b_X 1acc_A 3q8e_A 3q8c_A 3tez_A 3mhz_A* 3q8f_A*
3kwv_A 3hvd_A 1tzo_A 1tzn_A 3etb_J 3ino_A
Length = 715
Score = 29.5 bits (65), Expect = 4.4
Identities = 29/209 (13%), Positives = 66/209 (31%), Gaps = 9/209 (4%)
Query: 107 NPSTNTDASPSTNTDANPSTNTDASPST-NTDANPSTN----TDASPSTNTDANPSTNTD 161
N T S + T +SP +T ++P ++ T +
Sbjct: 198 NKRTFLSPWISNIHEKKGLTKYKSSPEKWSTASDPYSDFEKVTGRIDKNVSPEARHPLVA 257
Query: 162 ASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPS 221
A P + D + + + + T T + ++ + + S S S+ + S
Sbjct: 258 AYPIVHVDMENIILSKNEDQSTQNTDSQTRTISKNTSTSRTHTSEPGSNSNSSTVAIDHS 317
Query: 222 TNTDASPSTNTDANPSTNTDASPSTNTDANPSTNT---DASPSTNTDANPSTNTDANLSN 278
+ + +T A + N + + P+T+ T A +
Sbjct: 318 LSLAGERTWAETMGLNTADTARLNANIRYVNTGTAPIYNVLPTTSL-VLGKNQTLATIKA 376
Query: 279 KLADKKTNISTNSSSPIVVTSEPSIVSKD 307
K ++ N+ P + ++ ++D
Sbjct: 377 KENQLSQILAPNNYYPSKNLAPIALNAQD 405
>1d02_A Type II restriction enzyme MUNI; alpha/beta protein, protein-DNA
complex, distorted double HE hydrolase-DNA complex; HET:
DNA; 1.70A {Mycoplasma} SCOP: c.52.1.8
Length = 202
Score = 28.7 bits (63), Expect = 4.9
Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 15/77 (19%)
Query: 358 ENKCRFFSTNFKKLLQLVPRIPPGTVLPYKHV-QTRETRTQSRNAR-------------- 402
E C+ F+ K + + I +LP+ V + TR R
Sbjct: 120 ERSCKLFTPGLLKAYRTIGGINDEEILPFWVVFEGDITRDPKRVREITFWYDHYQDNYFM 179
Query: 403 WRNTAARKKLESHFRDY 419
WR + +KL HF +
Sbjct: 180 WRPNESGEKLVQHFNEK 196
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 5.5
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 658 KKSKAKKIEEVVVLKTISP-AKPVADI--TYE 686
+K KK++ LK + + P I T E
Sbjct: 18 EKQALKKLQA--SLKLYADDSAPALAIKATME 47
>3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-
succinyltransferase; ssgcid; 1.80A {Burkholderia
pseudomallei}
Length = 316
Score = 29.0 bits (64), Expect = 6.0
Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 1/73 (1%)
Query: 457 PCPPGELESPSVPSSSDPIESLSIPSSSDPSSTSSNSDAT-SSSIDAIIDQIWDMRKFLN 515
P + P + ++ SS++S+ S + IID W+ R L+
Sbjct: 2 PGSMRRRRAAHRRFLPRPRPLNARRNAPIHSSSTSSIATNMSQQLQQIIDNAWENRAELS 61
Query: 516 TNSNPDSSSDEIE 528
+ + +
Sbjct: 62 PKAASAEIREAVA 74
>3m8l_A Capsid protein; FCV-5 capsid, icosahedral virus; 3.40A {Feline
calicivirus} PDB: 3m8l_B
Length = 534
Score = 29.0 bits (64), Expect = 6.1
Identities = 27/231 (11%), Positives = 49/231 (21%), Gaps = 1/231 (0%)
Query: 24 PPTLQVLSPIVVTSEPSIVSKDVVNVTKPTVTTSNTTNQAITIVKREKSPDRDCVQVKAD 83
PP + V S + + T + R +++
Sbjct: 199 PPGSMLTHGSVPCDLIPKSSSLWIGNRFWSDITDFVIRPFVFQANRHFDFNQETAGWSTP 258
Query: 84 PPASATVTTSNTTNQAITIVKHANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTN 143
TVT S + + I + +T + +
Sbjct: 259 RFRPITVTISQKEGEMLGIGVATDYIVPGIPDGWPDTTIPNELIPAGDYAITNQSGNDIQ 318
Query: 144 TDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDAN 203
T + + +TN + + N S + PS D
Sbjct: 319 TKEEYESAMIISNNTNFKSMYICGSLQRAWGNKKVSNTAFITTATVKENKLIPSNTIDQT 378
Query: 204 PSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPST 254
+ N D S +T A + D P
Sbjct: 379 KIAIFQDNH-VNRDVQTSDDTLALLGYTGIGEEAIGADREKVVRIGVLPEA 428
>3k8t_A Ribonucleoside-diphosphate reductase large chain; eukaryotic
ribonucleotide reductase, nucleotide analogs, all enzyme
ATP-binding; HET: DGT 2A5; 2.10A {Saccharomyces
cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A*
1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A* 2cvx_A*
3paw_A 3s87_A* 3s8b_A* 3s8c_A* 3s8a_A* 3tb9_A* 3tba_A*
Length = 888
Score = 29.1 bits (65), Expect = 6.2
Identities = 14/116 (12%), Positives = 34/116 (29%), Gaps = 1/116 (0%)
Query: 552 HSKSKSPNEVTTVNKTKKSKAKKIEEVVVLNTISPAKPVADITYENTISNKFLNTNSNPD 611
+++ S T+++ +A + + N P+ + +Y + T +
Sbjct: 744 RTQAASAAIQFTIDQKIADQATENVADIS-NLKRPSYMPSSASYAASDFVPAAVTANATI 802
Query: 612 SSSDEVEILNTDSKSKPRSPEVITISSTPSNSKSKSPNEVTTVNKTKKSKAKKIEE 667
S D + ++ P +T N + TK +
Sbjct: 803 PSLDSSSEASREASPAPTGSHSLTKGMAELNVQESKVEVPEVPAPTKNEEKAAPIV 858
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 28.9 bits (64), Expect = 8.7
Identities = 22/189 (11%), Positives = 51/189 (26%), Gaps = 8/189 (4%)
Query: 77 CVQVKADPPASATVTTSNTTNQAITIVKHANPSTNTDASPSTNT----DANPSTNTDASP 132
+ D + + +P + + A+
Sbjct: 1446 AFDIYLDQDMLMNYSLGTAVPTLAGSGMGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAF 1505
Query: 133 STNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNT 192
S A SP + + + + ++ + + S
Sbjct: 1506 SPLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGY 1565
Query: 193 DASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANP 252
SP+ PS+ + + S + + + SPS + + + T S S + +
Sbjct: 1566 STSPAY----MPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYS 1621
Query: 253 STNTDASPS 261
T+ SP+
Sbjct: 1622 PTSPSYSPT 1630
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.300 0.115 0.309
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,935,508
Number of extensions: 481119
Number of successful extensions: 1043
Number of sequences better than 10.0: 1
Number of HSP's gapped: 876
Number of HSP's successfully gapped: 138
Length of query: 703
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 603
Effective length of database: 3,909,693
Effective search space: 2357544879
Effective search space used: 2357544879
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 61 (27.8 bits)