RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11148
(703 letters)
>d2euia1 d.108.1.1 (A:1-153) Probable acetyltransferase PA4026
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 153
Score = 30.8 bits (68), Expect = 0.30
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 495 ATSSSIDAIIDQIWDMRKFLNTNSNPDSSSDEIE 528
AT +D + R+F S P+SS +E
Sbjct: 6 ATLEHLDLLAPLFVKYREFYGMLSYPESSRKFLE 39
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 214
Score = 30.3 bits (67), Expect = 0.61
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 494 DATSSSIDAIIDQIWDM-RKFLNTNSNPDS 522
D T+ I + IW + L+T+ + D
Sbjct: 181 DVTNKGIQEVEALIWQIVEPVLSTHIDHDK 210
>d1d02a_ c.52.1.8 (A:) Restriction endonuclease MunI {Mycoplasma,
unidentified species [TaxId: 2093]}
Length = 197
Score = 29.9 bits (67), Expect = 0.76
Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 15/77 (19%)
Query: 358 ENKCRFFSTNFKKLLQLVPRIPPGTVLPYKHV-QTRETRTQSRNAR-------------- 402
E C+ F+ K + + I +LP+ V + TR R
Sbjct: 115 ERSCKLFTPGLLKAYRTIGGINDEEILPFWVVFEGDITRDPKRVREITFWYDHYQDNYFM 174
Query: 403 WRNTAARKKLESHFRDY 419
WR + +KL HF +
Sbjct: 175 WRPNESGEKLVQHFNEK 191
>d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium
[TaxId: 90371]}
Length = 395
Score = 30.1 bits (66), Expect = 0.90
Identities = 25/272 (9%), Positives = 62/272 (22%), Gaps = 3/272 (1%)
Query: 61 NQAITIVKREKSPDRDCVQVKADPPASATVTTSNTTNQAITIVKHANPSTNTDASPSTNT 120
+ +TI + + +K + + T N + A + D + + +
Sbjct: 85 DNTLTIQVGANDGETIDIDLKQINSQTLGLDTLNVQQKYKVSDTAATVTGYADTTIALDN 144
Query: 121 DANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASP 180
++ T + D + + T + +
Sbjct: 145 STFKASATGLGGTDQKIDGDLKFDDTTGKYYAKVTVTGGTGKDGYYEVSVDKTNGEVTLA 204
Query: 181 STNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNT 240
T + + + A T T + + N
Sbjct: 205 GGATSPLTGGLPATATEDVKNVQVANADLTEAKAALTAAGVTGTASVVKMSYTDNNGKTI 264
Query: 241 DASPSTNTDAN---PSTNTDASPSTNTDANPSTNTDANLSNKLADKKTNISTNSSSPIVV 297
D + + + N D S S NT + + + + + S
Sbjct: 265 DGGLAVKVGDDYYSATQNKDGSISINTTKYTADDGTSKTALNKLGGADGKTEVVSIGGKT 324
Query: 298 TSEPSIVSKDVVNVTKPTVTTSNTTNQAITIV 329
+ + + TT + +
Sbjct: 325 YAASKAEGHNFKAQPDLAEAAATTTENPLQKI 356
>d3c96a2 d.16.1.2 (A:183-293) Monooxygenase PhzS {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 111
Score = 27.6 bits (61), Expect = 1.9
Identities = 9/54 (16%), Positives = 16/54 (29%), Gaps = 2/54 (3%)
Query: 389 VQTRETRTQSRNARWRNTAARKKLESHFRDYHFRMFSTPISVKEREG--KKPMV 440
V + A W + + F D+ F + + + PMV
Sbjct: 57 VPSAAVGQLDNEADWNRDGRLEDVLPFFADWDLGWFDIRDLLTRNQLILQYPMV 110
>d1daba_ b.80.1.7 (A:) Virulence factor P.69 pertactin {Bordetella
pertussis [TaxId: 520]}
Length = 539
Score = 29.0 bits (63), Expect = 2.2
Identities = 21/192 (10%), Positives = 34/192 (17%), Gaps = 3/192 (1%)
Query: 87 SATVTTSNTTNQAITIVKHANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDA 146
+ I + N A A S A
Sbjct: 272 ELAQSIVEAPELGAAIRVGRGARVTVPGGSLSAPHGNVIETGGARRFAPQAAPLSITLQA 331
Query: 147 SPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPST 206
A D + ++ + + A +
Sbjct: 332 GAHAQGKALLYRVLPEPVKLTLTGGADAQGDIVATELPSIPGTSIGPLDVALASQARWTG 391
Query: 207 NTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDA 266
T A S + D TD S N A + + +
Sbjct: 392 ATRAVDSLSIDNATWVMTDNS---NVGALRLASDGSVDFQQPAEAGRFKVLTVNTLAGSG 448
Query: 267 NPSTNTDANLSN 278
N A+L
Sbjct: 449 LFRMNVFADLGL 460
Score = 28.2 bits (61), Expect = 4.0
Identities = 23/265 (8%), Positives = 62/265 (23%), Gaps = 2/265 (0%)
Query: 35 VTSEPSIVSKDVVNVTKPTVTTSNTTNQAITIVKREKSPDRDCVQVKADPPASATVTTSN 94
V + + + V+ A +
Sbjct: 235 VPGGAVPGGAVPGGFGPGGFGPVLDGWYGVDVSGSSVELAQSIVEAPELGAAIRVGRGAR 294
Query: 95 TTNQAITIVKHANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDA 154
T ++ T + A P + T + + P T
Sbjct: 295 VTVPGGSLSAPHGNVIETGGARRFAPQAAPLSITLQAGAHAQGKALLYRVLPEPVKLTLT 354
Query: 155 NPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPST 214
+ +T + P T+ P A+ + T A+ + ++ + + + ++
Sbjct: 355 GGADAQGDIVATELPSIPGTSI--GPLDVALASQARWTGATRAVDSLSIDNATWVMTDNS 412
Query: 215 NTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDA 274
N A + + + N A + +
Sbjct: 413 NVGALRLASDGSVDFQQPAEAGRFKVLTVNTLAGSGLFRMNVFADLGLSDKLVVMQDASG 472
Query: 275 NLSNKLADKKTNISTNSSSPIVVTS 299
+ + + ++ ++ +V T
Sbjct: 473 QHRLWVRNSGSEPASANTLLLVQTP 497
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi
[TaxId: 556]}
Length = 400
Score = 28.1 bits (61), Expect = 3.6
Identities = 19/173 (10%), Positives = 47/173 (27%), Gaps = 3/173 (1%)
Query: 86 ASATVTTSNTTNQAITIVKHANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTD 145
+ V N+ I + + + + N + S
Sbjct: 216 SPQKVVIENSWAFRNGINYWNDSAFAGNGNGFKLGGNQAVGNHRITRSVAFGNVSKGFDQ 275
Query: 146 ASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPS 205
+ + +T+ + +N + N + S + + + +
Sbjct: 276 NNNAGGVTVINNTSYKNGINYGFGSNVQSGQKHYFRNNVSLSASVTVSNADAKSNSWDTG 335
Query: 206 TNTDASPSTNTD---ANPSTNTDASPSTNTDANPSTNTDASPSTNTDANPSTN 255
AS + D A S + D + + S N+ + ++N S +
Sbjct: 336 PAASASDFVSLDTSLATVSRDNDGTLPETSLFRLSANSKLINAGTKESNISYS 388
>d2b7oa1 c.1.10.8 (A:1-462) Probable DAHP synthetase AroG,
phenylalanine-repressible {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 462
Score = 27.9 bits (62), Expect = 4.4
Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 7/56 (12%)
Query: 383 VLPYKHVQTRETRTQSRNARWRNTAA-------RKKLESHFRDYHFRMFSTPISVK 431
VL Y+ R + + + +A R + ++ + P+ VK
Sbjct: 251 VLDYERAMLRLSDGDDGEPQLFDLSAHTVWIGERTRQIDGAHIAFAQVIANPVGVK 306
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.300 0.115 0.309
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,163,456
Number of extensions: 91438
Number of successful extensions: 223
Number of sequences better than 10.0: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 43
Length of query: 703
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 611
Effective length of database: 1,144,436
Effective search space: 699250396
Effective search space used: 699250396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 56 (25.7 bits)