Query psy11150
Match_columns 201
No_of_seqs 188 out of 372
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 19:17:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11150.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11150hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3123|consensus 100.0 6.9E-62 1.5E-66 418.9 12.2 134 1-134 125-260 (272)
2 PTZ00175 diphthine synthase; P 100.0 3E-51 6.5E-56 360.3 14.2 135 1-135 126-263 (270)
3 COG1798 DPH5 Diphthamide biosy 100.0 3.9E-47 8.5E-52 332.0 12.3 118 1-134 126-245 (260)
4 TIGR00522 dph5 diphthine synth 99.9 5.1E-27 1.1E-31 204.2 13.2 120 1-135 126-248 (257)
5 PF07061 Swi5: Swi5; InterPro 99.9 7.6E-24 1.7E-28 158.6 9.3 70 131-200 9-83 (83)
6 PRK04160 diphthine synthase; P 99.7 1.7E-17 3.8E-22 143.5 13.3 119 1-135 127-247 (258)
7 TIGR01469 cobA_cysG_Cterm urop 98.5 7.2E-07 1.6E-11 75.2 8.6 99 2-128 129-231 (236)
8 PRK06136 uroporphyrin-III C-me 98.1 1E-05 2.2E-10 69.0 8.2 98 2-127 132-234 (249)
9 PRK05991 precorrin-3B C17-meth 98.0 4.1E-05 8.9E-10 66.3 8.8 86 21-130 142-231 (250)
10 PRK10637 cysG siroheme synthas 97.8 0.00012 2.6E-09 68.8 9.3 98 2-129 345-444 (457)
11 TIGR01465 cobM_cbiF precorrin- 97.4 0.00098 2.1E-08 56.1 9.1 57 67-128 167-225 (229)
12 PF00590 TP_methylase: Tetrapy 97.4 0.0017 3.7E-08 53.2 9.6 80 2-112 130-210 (210)
13 PRK05787 cobalt-precorrin-6Y C 97.3 0.003 6.6E-08 52.3 10.4 76 24-127 133-208 (210)
14 PLN02625 uroporphyrin-III C-me 97.0 0.0055 1.2E-07 53.5 9.6 90 9-125 151-245 (263)
15 TIGR01466 cobJ_cbiH precorrin- 96.7 0.0096 2.1E-07 50.7 8.8 58 63-127 165-222 (239)
16 COG2875 CobM Precorrin-4 methy 95.7 0.053 1.1E-06 48.5 7.8 99 6-132 133-234 (254)
17 PRK15478 cbiH cobalt-precorrin 95.4 0.031 6.7E-07 48.7 5.5 44 83-128 180-223 (241)
18 PRK05765 precorrin-3B C17-meth 94.4 0.11 2.3E-06 45.1 6.2 44 83-127 179-224 (246)
19 PRK07168 bifunctional uroporph 93.5 0.17 3.8E-06 48.5 6.2 53 68-127 176-232 (474)
20 PRK15473 cbiF cobalt-precorrin 93.4 0.48 1.1E-05 41.2 8.3 54 67-125 176-232 (257)
21 TIGR02467 CbiE precorrin-6y C5 93.1 0.44 9.4E-06 39.8 7.4 49 66-119 151-199 (204)
22 COG2241 CobL Precorrin-6B meth 92.1 0.25 5.4E-06 43.0 4.7 60 59-126 146-205 (210)
23 COG0007 CysG Uroporphyrinogen- 87.1 2.8 6.1E-05 37.4 7.4 60 64-128 168-232 (244)
24 PRK14994 SAM-dependent 16S rib 86.7 6.1 0.00013 35.7 9.4 105 67-194 172-281 (287)
25 PRK05576 cobalt-precorrin-2 C( 80.3 8.4 0.00018 32.7 7.3 34 89-126 191-224 (229)
26 PF01371 Trp_repressor: Trp re 75.1 16 0.00034 27.8 6.6 56 140-198 5-63 (87)
27 PF01230 HIT: HIT domain; Int 71.6 4.8 0.0001 29.5 3.1 20 118-138 25-44 (98)
28 KOG4603|consensus 68.2 46 0.001 28.9 8.7 70 128-197 115-200 (201)
29 PF08902 DUF1848: Domain of un 67.6 57 0.0012 29.5 9.6 136 8-187 49-198 (266)
30 COG1010 CobJ Precorrin-3B meth 66.9 53 0.0011 29.7 9.1 87 14-127 136-226 (249)
31 TIGR01467 cobI_cbiL precorrin- 66.7 13 0.00029 31.3 5.2 35 89-126 194-228 (230)
32 PF06005 DUF904: Protein of un 63.0 54 0.0012 24.0 7.1 49 132-180 14-70 (72)
33 PF15079 DUF4546: Domain of un 56.1 23 0.0005 30.7 4.7 37 133-169 55-91 (205)
34 PF04325 DUF465: Protein of un 55.9 21 0.00045 23.8 3.6 33 131-163 1-33 (49)
35 KOG0807|consensus 55.4 11 0.00023 34.5 2.7 71 37-125 169-242 (295)
36 KOG1527|consensus 52.9 10 0.00023 36.4 2.4 47 82-128 436-484 (506)
37 KOG3275|consensus 51.6 12 0.00026 30.5 2.3 58 116-174 47-108 (127)
38 PRK08284 precorrin 6A synthase 51.1 14 0.0003 32.7 2.8 27 87-113 200-226 (253)
39 PF04009 DUF356: Protein of un 50.6 55 0.0012 26.1 5.7 75 57-139 26-101 (107)
40 PRK11415 hypothetical protein; 50.4 12 0.00026 27.3 1.9 23 128-150 16-38 (74)
41 PRK01381 Trp operon repressor; 50.3 1.1E+02 0.0025 23.9 7.4 54 143-198 11-69 (99)
42 PF04977 DivIC: Septum formati 50.0 27 0.00059 24.3 3.7 52 128-179 16-68 (80)
43 COG4634 Uncharacterized protei 48.9 41 0.0009 27.0 4.8 32 105-136 52-86 (113)
44 PRK05948 precorrin-2 methyltra 48.7 33 0.00071 30.0 4.7 35 90-127 199-233 (238)
45 TIGR01321 TrpR trp operon repr 45.5 1.3E+02 0.0029 23.2 7.1 46 152-198 22-69 (94)
46 COG3074 Uncharacterized protei 44.7 79 0.0017 23.7 5.4 51 129-179 25-76 (79)
47 TIGR02434 CobF precorrin-6A sy 43.7 22 0.00048 31.3 2.9 26 87-112 199-224 (249)
48 PF07700 HNOB: Heme NO binding 41.7 25 0.00055 28.6 2.8 26 170-195 46-71 (171)
49 PF06698 DUF1192: Protein of u 39.1 85 0.0018 22.4 4.7 24 128-151 20-43 (59)
50 PF14287 DUF4368: Domain of un 37.7 48 0.001 24.0 3.4 37 143-179 1-37 (71)
51 COG0537 Hit Diadenosine tetrap 37.4 48 0.001 26.5 3.7 32 117-149 33-64 (138)
52 PF03962 Mnd1: Mnd1 family; I 36.9 2.6E+02 0.0056 23.7 8.8 29 170-198 156-184 (188)
53 COG1844 Uncharacterized protei 36.4 30 0.00065 28.2 2.3 76 57-141 28-104 (125)
54 TIGR02531 yecD_yerC TrpR-relat 35.7 1.7E+02 0.0038 22.0 6.3 44 155-198 21-64 (88)
55 cd01278 aprataxin_related apra 34.8 42 0.0009 24.6 2.8 21 117-138 34-54 (104)
56 cd01277 HINT_subgroup HINT (hi 34.7 48 0.001 23.9 3.1 22 118-140 33-54 (103)
57 PF08721 Tn7_Tnp_TnsA_C: TnsA 34.6 1.1E+02 0.0024 21.0 4.8 41 154-194 5-51 (79)
58 PF08946 Osmo_CC: Osmosensory 34.5 91 0.002 21.4 4.1 29 130-158 13-42 (46)
59 cd01276 PKCI_related Protein K 32.7 59 0.0013 23.7 3.3 19 118-137 33-51 (104)
60 PF00816 Histone_HNS: H-NS his 32.3 1.3E+02 0.0029 22.0 5.2 20 132-151 1-20 (93)
61 PRK15326 type III secretion sy 32.2 2.2E+02 0.0048 21.5 6.3 27 153-179 42-79 (80)
62 COG5509 Uncharacterized small 30.5 1.1E+02 0.0025 22.2 4.2 40 129-178 25-64 (65)
63 KOG4552|consensus 30.2 2E+02 0.0043 26.0 6.6 50 128-179 56-108 (272)
64 PF13412 HTH_24: Winged helix- 29.8 89 0.0019 19.8 3.4 29 170-198 3-31 (48)
65 PF08657 DASH_Spc34: DASH comp 29.6 1.4E+02 0.0031 26.7 5.8 63 116-183 145-207 (259)
66 PF08279 HTH_11: HTH domain; 29.6 70 0.0015 20.7 2.9 24 174-197 4-28 (55)
67 cd00468 HIT_like HIT family: H 29.5 41 0.00089 23.3 1.9 20 118-138 17-36 (86)
68 PF10883 DUF2681: Protein of u 29.4 1.4E+02 0.003 22.8 4.8 13 158-170 74-86 (87)
69 COG4496 Uncharacterized protei 29.3 1.9E+02 0.0041 22.7 5.6 58 140-198 13-70 (100)
70 COG4565 CitB Response regulato 29.1 1.6E+02 0.0034 26.3 5.8 126 36-197 48-186 (224)
71 PF08149 BING4CT: BING4CT (NUC 28.8 75 0.0016 24.1 3.2 40 96-135 8-49 (80)
72 PRK10687 purine nucleoside pho 28.7 73 0.0016 24.9 3.3 31 118-149 36-66 (119)
73 PF10376 Mei5: Double-strand r 28.4 4.1E+02 0.0088 23.3 8.3 72 128-199 130-216 (221)
74 KOG4239|consensus 28.0 5.1E+02 0.011 24.5 9.1 57 5-76 172-235 (348)
75 PF06103 DUF948: Bacterial pro 27.2 2.5E+02 0.0053 20.4 7.2 47 131-177 21-68 (90)
76 PF07303 Occludin_ELL: Occludi 26.8 2E+02 0.0043 22.2 5.4 50 134-184 34-94 (101)
77 COG5379 BtaA S-adenosylmethion 26.8 4.4E+02 0.0096 25.2 8.5 103 10-149 282-396 (414)
78 TIGR02209 ftsL_broad cell divi 26.6 1.2E+02 0.0025 21.6 3.9 36 138-173 33-68 (85)
79 PF08220 HTH_DeoR: DeoR-like h 25.8 84 0.0018 21.3 2.8 26 173-198 3-28 (57)
80 PRK03002 prsA peptidylprolyl i 25.5 1.7E+02 0.0036 26.0 5.4 53 120-172 217-272 (285)
81 PRK05990 precorrin-2 C(20)-met 25.3 1.1E+02 0.0024 26.4 4.2 35 90-128 202-236 (241)
82 PRK00888 ftsB cell division pr 25.2 1.3E+02 0.0027 23.3 4.0 36 129-164 27-62 (105)
83 smart00346 HTH_ICLR helix_turn 25.1 1.1E+02 0.0023 21.5 3.4 28 171-198 6-34 (91)
84 TIGR01764 excise DNA binding d 24.9 53 0.0012 20.1 1.6 11 64-74 1-11 (49)
85 PF14138 COX16: Cytochrome c o 24.8 20 0.00044 26.6 -0.4 65 116-201 3-69 (80)
86 COG2096 cob(I)alamin adenosylt 24.8 2.9E+02 0.0063 23.9 6.5 30 118-147 105-134 (184)
87 COG2919 Septum formation initi 24.5 1.6E+02 0.0034 23.1 4.5 49 129-177 50-99 (117)
88 PF07374 DUF1492: Protein of u 24.3 3.1E+02 0.0067 20.5 7.6 61 132-198 25-85 (100)
89 smart00338 BRLZ basic region l 24.2 2.3E+02 0.0051 19.3 4.9 34 131-164 28-61 (65)
90 PF08784 RPA_C: Replication pr 23.6 40 0.00086 25.0 1.0 33 167-199 44-80 (102)
91 smart00420 HTH_DEOR helix_turn 23.1 1.2E+02 0.0027 18.6 3.1 24 175-198 5-28 (53)
92 TIGR02675 tape_meas_nterm tape 22.7 1.2E+02 0.0026 21.9 3.3 31 163-193 34-64 (75)
93 PF12840 HTH_20: Helix-turn-he 22.2 1.1E+02 0.0024 20.5 2.9 27 172-198 12-38 (61)
94 PF13443 HTH_26: Cro/C1-type H 22.1 94 0.002 20.5 2.5 21 177-197 3-23 (63)
95 PF10046 BLOC1_2: Biogenesis o 21.7 2.2E+02 0.0049 21.4 4.8 20 142-161 72-91 (99)
96 PF11969 DcpS_C: Scavenger mRN 21.5 97 0.0021 23.9 2.8 19 118-136 33-51 (116)
97 PF12728 HTH_17: Helix-turn-he 21.5 67 0.0014 20.6 1.6 11 64-74 1-11 (51)
98 PRK15422 septal ring assembly 21.5 3.7E+02 0.008 20.4 5.7 49 131-179 27-76 (79)
99 KOG2752|consensus 21.3 1.9E+02 0.0041 27.3 5.0 30 157-186 303-332 (345)
100 PF04111 APG6: Autophagy prote 21.3 4.4E+02 0.0096 24.0 7.4 10 160-169 96-105 (314)
101 PF08653 DASH_Dam1: DASH compl 21.2 2.8E+02 0.006 19.7 4.8 34 135-168 4-37 (58)
102 PF01923 Cob_adeno_trans: Coba 20.9 2.5E+02 0.0054 22.9 5.3 55 117-181 99-153 (163)
103 TIGR02263 benz_CoA_red_C benzo 20.8 4.5E+02 0.0098 24.3 7.5 74 118-191 120-198 (380)
104 COG4026 Uncharacterized protei 20.4 2.9E+02 0.0062 25.2 5.8 37 164-200 192-229 (290)
105 smart00550 Zalpha Z-DNA-bindin 20.3 1.3E+02 0.0028 21.0 3.0 27 172-198 8-36 (68)
No 1
>KOG3123|consensus
Probab=100.00 E-value=6.9e-62 Score=418.92 Aligned_cols=134 Identities=55% Similarity=0.972 Sum_probs=131.4
Q ss_pred CCcCCceeEeeccCCCcccCchHHHHHHHhhCCCeeeEeeecccCCcchhHhhhccccCCCCCCCCHHHHHHHHHHHhhc
Q psy11150 1 LYNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKT 80 (201)
Q Consensus 1 ~YrFG~tvSIpf~~~~~~P~S~yd~I~~N~~~gLHTL~LLDIk~~e~~~e~~~~g~~~y~p~r~Mt~~eA~~~Lle~e~~ 80 (201)
+|+||+|||||||+++|+|+||||+|++|+++|||||||||||+||||+|||+||||+||||||||+++|++||||++++
T Consensus 125 lY~fGetVSiv~ftd~wrP~SfydkI~~Nr~~glHTLcLLDIkvkEqs~enl~rgrkiyeppRymsvn~a~~QlLei~e~ 204 (272)
T KOG3123|consen 125 LYNFGETVSIVFFTDNWRPESFYDKIKENRQLGLHTLCLLDIKVKEQSVENLARGRKIYEPPRYMSVNEAAEQLLEIEEK 204 (272)
T ss_pred eeccCcEEEEEEEccCcCchhHHHHHHHhhhcCceeEEEEEEeeccHHHHHHhccccccCCchhhhHHHHHHHHHHHHHh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C--CCCCCCceEEEEeecCCCCceEEeecccchhcCCCCCCCeEEEEecCCChhHH
Q psy11150 81 K--PGLSTADLAVGIARVGSETQHIVATSLSDMTETNMGKPLHSLIISDESKIKDL 134 (201)
Q Consensus 81 ~--~~~~~dt~~v~~aR~G~~dq~I~~g~l~el~~~dfG~PlHslIIpg~lH~qeL 134 (201)
+ .++++||+|||+||+||+||+|++||+++|++.|||+|||||||||++|+-|+
T Consensus 205 ~~~~~~~edT~~v~~~R~Gs~~q~i~~gt~~~l~~~d~G~PLHslii~ge~h~lE~ 260 (272)
T KOG3123|consen 205 RGEPAYTEDTLCVAVARVGSDDQKIVAGTIKDLAEVDFGEPLHSLIIPGETHPLEL 260 (272)
T ss_pred hCCCCcCCCceEEEEEecCCCcceeeheeHHhHhhcccCCCceeEEeecCcChHHH
Confidence 8 58999999999999999999999999999999999999999999999998765
No 2
>PTZ00175 diphthine synthase; Provisional
Probab=100.00 E-value=3e-51 Score=360.34 Aligned_cols=135 Identities=53% Similarity=0.904 Sum_probs=131.0
Q ss_pred CCcCCceeEeeccCCCcccCchHHHHHHHhhCCCeeeEeeecccCCcchhHhhhccccCCCCCCCCHHHHHHHHHHHhhc
Q psy11150 1 LYNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKT 80 (201)
Q Consensus 1 ~YrFG~tvSIpf~~~~~~P~S~yd~I~~N~~~gLHTL~LLDIk~~e~~~e~~~~g~~~y~p~r~Mt~~eA~~~Lle~e~~ 80 (201)
+|+||+++|||||+++|+|+||||+|++|+++|||||||||||++|+|+|||||||++|||||||+++||++||++++++
T Consensus 126 ~~~fg~~~sv~~~t~~~~~~s~~~~i~~n~~~glhTl~lldi~~~~~~~~~~~~~~~~~~~~~~M~~~~a~~~l~~i~~~ 205 (270)
T PTZ00175 126 LYRFGETVSIPFFTETWKPDSFYDKIKANRDNGLHTLCLLDIKVKERSVENLMKGRKIYEPPRYMTINQAIEQLLEVEEK 205 (270)
T ss_pred cCCCCceEEEEEEeCCCCCCChhHHHHHHHHcCCceEEEEeeeccccchhhhhccccccCCCcCCCHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred C--CCCCCCceEEEEeecCCCCceEEeecccchhcCCCCCCCeEEEEecC-CChhHHH
Q psy11150 81 K--PGLSTADLAVGIARVGSETQHIVATSLSDMTETNMGKPLHSLIISDE-SKIKDLL 135 (201)
Q Consensus 81 ~--~~~~~dt~~v~~aR~G~~dq~I~~g~l~el~~~dfG~PlHslIIpg~-lH~qeL~ 135 (201)
+ ++++++|+||++||+||++|+|++|||++|++.|||+|||||||||+ ||+.|..
T Consensus 206 ~~~~~~~~~t~~v~v~r~g~~~q~i~~gtL~~l~~~d~g~PlhsLIv~g~~Lh~~E~e 263 (270)
T PTZ00175 206 KGGGVIAEDTLVVGVARVGSDDQQIVSGTLEDLLDVDFGPPLHSLVICAPTLHDIEEE 263 (270)
T ss_pred HhcCCCCCCCeEEEEEECCCCCceEEEEEHHHHhhcccCCCCEEEEEECCcCCHHHHH
Confidence 6 78999999999999999999999999999999999999999999998 9998653
No 3
>COG1798 DPH5 Diphthamide biosynthesis methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.9e-47 Score=332.04 Aligned_cols=118 Identities=40% Similarity=0.662 Sum_probs=114.0
Q ss_pred CCcCCceeEeeccCCCcccCchHHHHHHHhhCCCeeeEeeecccCCcchhHhhhccccCCCCCCCCHHHHHHHHHHHhhc
Q psy11150 1 LYNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKT 80 (201)
Q Consensus 1 ~YrFG~tvSIpf~~~~~~P~S~yd~I~~N~~~gLHTL~LLDIk~~e~~~e~~~~g~~~y~p~r~Mt~~eA~~~Lle~e~~ 80 (201)
+||||+|||||||+++|+|.||||+|++|+++|||||||||||+++ ||||++||+++|||+|++
T Consensus 126 ~YkFG~~vTip~~~~~~~p~s~yd~Ik~N~~~GLHTl~lLDi~~~~----------------r~Mt~~ea~~~LLe~e~~ 189 (260)
T COG1798 126 NYKFGKTVTLPFPSENFFPTSPYDVIKENLERGLHTLVLLDIKEDE----------------RYMTANEALELLLEAEER 189 (260)
T ss_pred eeccCCceEecccccCcCCCcHHHHHHHhhhcCccceEEEEecccc----------------cccCHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999864 899999999999999999
Q ss_pred C--CCCCCCceEEEEeecCCCCceEEeecccchhcCCCCCCCeEEEEecCCChhHH
Q psy11150 81 K--PGLSTADLAVGIARVGSETQHIVATSLSDMTETNMGKPLHSLIISDESKIKDL 134 (201)
Q Consensus 81 ~--~~~~~dt~~v~~aR~G~~dq~I~~g~l~el~~~dfG~PlHslIIpg~lH~qeL 134 (201)
+ |++++|+++|++||+||+++.|+||++++|++.|||+|||||||||+||+-|.
T Consensus 190 ~~~~~~~~d~~~vvvaR~Gs~~~~v~ag~l~~l~~~Dfg~Plh~lvvp~~Lh~~E~ 245 (260)
T COG1798 190 RGRGVLTEDTLAVVVARAGSGDEVVRAGTLEELADEDFGEPLHSLVVPGRLHFVEA 245 (260)
T ss_pred hcCCCcCCCceEEEEEecCCCCceEEechHHHHhhcccCCCceEEEEeccccHHHH
Confidence 7 79999999999999999999999999999999999999999999999999854
No 4
>TIGR00522 dph5 diphthine synthase. This protein participates in the modification of a specific His of elongation factor 2 of eukarotes and Archaea to diphthamide. The protein was characterized in Saccharomyces cerevisiae and designated DPH5.
Probab=99.94 E-value=5.1e-27 Score=204.22 Aligned_cols=120 Identities=33% Similarity=0.619 Sum_probs=113.2
Q ss_pred CCcCCceeEeeccCCCcccCchHHHHHHHhhCCCeeeEeeecccCCcchhHhhhccccCCCCCCCCHHHHHHHHHHHhhc
Q psy11150 1 LYNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKT 80 (201)
Q Consensus 1 ~YrFG~tvSIpf~~~~~~P~S~yd~I~~N~~~gLHTL~LLDIk~~e~~~e~~~~g~~~y~p~r~Mt~~eA~~~Lle~e~~ 80 (201)
+|+||+++|+||+++.|+|.|+|+.+++|+.+++|||||||++.++ .|||++++|+++|++++++
T Consensus 126 lt~~g~~~~v~~~s~~~~~~~~~~~~~~~l~~~~~Tlvll~~~~~~---------------~~~M~~~~~~~~l~~~~~~ 190 (257)
T TIGR00522 126 LYKFGKTATIVFFTDNYRPQTPYNVIKENRKIGLHTLVLLDIHPKE---------------NRAMTIGEGLENLLEEEEK 190 (257)
T ss_pred cccCCCcEEEEEecCCcCCCCHHHHHHHHHhcCCCcEEEEecccCc---------------ccccCHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999866 4999999999999999876
Q ss_pred C--CCCCCCceEEEEeecCCCCceEEeecccchhcCCCCCCCeEEEEecC-CChhHHH
Q psy11150 81 K--PGLSTADLAVGIARVGSETQHIVATSLSDMTETNMGKPLHSLIISDE-SKIKDLL 135 (201)
Q Consensus 81 ~--~~~~~dt~~v~~aR~G~~dq~I~~g~l~el~~~dfG~PlHslIIpg~-lH~qeL~ 135 (201)
. +.+++|+.+++++|+|++||+|..||+++|.+.+||.|+|+|||||+ ||+.|..
T Consensus 191 l~~~g~~~~tpv~vv~~~~~~de~i~~gtl~~l~~~~~~~~~~alii~g~~l~~~e~~ 248 (257)
T TIGR00522 191 RKTGAITPDTYAVVIARAGSGKPVVKCDKIENLKNYDFGEPLHCLVVLAKTLHFMEFE 248 (257)
T ss_pred HhhcCCCCCCeEEEEEECCCCCceEEEEEHHHHHhcccCCCCeEEEEeCCCCCHHHHH
Confidence 4 67899999999999999999999999999999999999999999998 9998654
No 5
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=99.90 E-value=7.6e-24 Score=158.57 Aligned_cols=70 Identities=39% Similarity=0.596 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhcCCcHHHHHHHhCCCCCC
Q psy11150 131 IKDLLEKEKLIDEELAHLEQ-----AVEIRDVVMSKLHEYNDIKDATQIVIGTLANLQQVTVRKLHEDFGLDKPS 200 (201)
Q Consensus 131 ~qeL~~~~~~l~~e~~~l~~-----~~~~~~~~i~lLh~YNeiKD~~q~l~g~iA~~~gvt~~~v~~e~gl~~~~ 200 (201)
.++|.+...+++++++++.+ +++++++||++||+||||||+||+|||+||+.||||+++||++||++++|
T Consensus 9 ~~~L~~~~~~l~~~i~~~~~~l~~~~~~~v~~hI~lLheYNeiKD~gQ~Lig~iA~~rgvt~~~v~~e~gl~~~D 83 (83)
T PF07061_consen 9 IQELKEQIEQLEKEISELEAELIEDPEKIVKRHIKLLHEYNEIKDIGQGLIGLIADQRGVTVKDVYEEFGLDMND 83 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCCCC
Confidence 45677777788888888655 59999999999999999999999999999999999999999999999988
No 6
>PRK04160 diphthine synthase; Provisional
Probab=99.75 E-value=1.7e-17 Score=143.54 Aligned_cols=119 Identities=37% Similarity=0.607 Sum_probs=108.1
Q ss_pred CCcCCceeEeeccCCCcccCchHHHHHHHhhCCCeeeEeeecccCCcchhHhhhccccCCCCCCCCHHHHHHHHHHHhhc
Q psy11150 1 LYNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKT 80 (201)
Q Consensus 1 ~YrFG~tvSIpf~~~~~~P~S~yd~I~~N~~~gLHTL~LLDIk~~e~~~e~~~~g~~~y~p~r~Mt~~eA~~~Lle~e~~ 80 (201)
+|+||.++|+||.+..|.|.++.+.|..++..+.||++||+.+.+ ++||++..|+++|++..++
T Consensus 127 ~~~~g~~~s~~~~~~~~~~~~~~~~i~~~~~~~~~~~vll~~~~~----------------~~~~~~~~~~~~L~~~~~~ 190 (258)
T PRK04160 127 NYKFGKSVTVPFPYGNFFPESPYDVIKDNLERGLHTLVLLDIKAD----------------GRYMTANEALELLLELEEK 190 (258)
T ss_pred cccCCceEEEccCcCCcCCCCHHHHHHHHHhcCCCcEEEEEeccC----------------CcccCHHHHHHHHHHHHHH
Confidence 488999999999888898888999999999999999999998754 4799999999999998655
Q ss_pred C--CCCCCCceEEEEeecCCCCceEEeecccchhcCCCCCCCeEEEEecCCChhHHH
Q psy11150 81 K--PGLSTADLAVGIARVGSETQHIVATSLSDMTETNMGKPLHSLIISDESKIKDLL 135 (201)
Q Consensus 81 ~--~~~~~dt~~v~~aR~G~~dq~I~~g~l~el~~~dfG~PlHslIIpg~lH~qeL~ 135 (201)
. |.+.+++.+++++|+|+++|+|..+++++|.+.+|++|+|++|||++||+.|..
T Consensus 191 l~~g~~~~~~~v~V~e~l~~~~E~i~~~tl~~l~~~~f~~~~~~~ii~~~~~~~~~~ 247 (258)
T PRK04160 191 RGEGVISEDTLAVVVARAGSPDPVVRAGRLEELADYDFGGPLHILIIPGKLHFMEAE 247 (258)
T ss_pred hcccccCCCCEEEEEEecCCCCceEEEccHHHHhhCCCCCCCEEEEEeCCCCHHHHH
Confidence 3 667789999999999999999999999999999999999999999999998754
No 7
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase. This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.
Probab=98.47 E-value=7.2e-07 Score=75.19 Aligned_cols=99 Identities=24% Similarity=0.315 Sum_probs=72.5
Q ss_pred CcCCceeEeeccCCCcccCchHHHHHHHhhCCCeeeEeeecccCCcchhHhhhccccCCCCCCCCHHHHHHHHHHHhhcC
Q psy11150 2 YNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTK 81 (201)
Q Consensus 2 YrFG~tvSIpf~~~~~~P~S~yd~I~~N~~~gLHTL~LLDIk~~e~~~e~~~~g~~~y~p~r~Mt~~eA~~~Lle~e~~~ 81 (201)
+.||.+.++.|.+..+++.+..+...+++..+.||+++++- .. .+.+.++.|.+.
T Consensus 129 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~-~~--------------------~~~~i~~~L~~~---- 183 (236)
T TIGR01469 129 THRGVASSVTFVTGHEADDKALEVDWEALAKGAGTLVIYMG-VR--------------------NLPEIAKELIEH---- 183 (236)
T ss_pred ccCCCcceEEEEEcccCCCcccccCHHHHhcCCCeEEEECC-HH--------------------HHHHHHHHHHHc----
Confidence 45676666777677778877654446788888899998752 11 345555555541
Q ss_pred CCCCCCceEEEEeecCCCCceEEeecccchhc----CCCCCCCeEEEEecC
Q psy11150 82 PGLSTADLAVGIARVGSETQHIVATSLSDMTE----TNMGKPLHSLIISDE 128 (201)
Q Consensus 82 ~~~~~dt~~v~~aR~G~~dq~I~~g~l~el~~----~dfG~PlHslIIpg~ 128 (201)
.+.+++.+++++|+|+++|+|..+++++|.+ .+|++| ++|+.|+
T Consensus 184 -g~~~~~~~~v~~~lg~~~E~i~~~~l~el~~~~~~~~~~~~--~vvivg~ 231 (236)
T TIGR01469 184 -GRSPDTPVAVVEWATTPNQRVLIGTLGDLAEKAAEANLKSP--ALIVIGE 231 (236)
T ss_pred -CCCCCCcEEEEEECCCCCcEEEEEEHHHHHHHHHhcCCCCC--EEEEEcc
Confidence 3456788999999999999999999999985 788877 6666664
No 8
>PRK06136 uroporphyrin-III C-methyltransferase; Reviewed
Probab=98.14 E-value=1e-05 Score=69.04 Aligned_cols=98 Identities=18% Similarity=0.187 Sum_probs=71.0
Q ss_pred CcCCceeEeeccCCCcccCchH-HHHHHHhhCCCeeeEeeecccCCcchhHhhhccccCCCCCCCCHHHHHHHHHHHhhc
Q psy11150 2 YNFGETVSIPFWTESWKPDSFY-DKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKT 80 (201)
Q Consensus 2 YrFG~tvSIpf~~~~~~P~S~y-d~I~~N~~~gLHTL~LLDIk~~e~~~e~~~~g~~~y~p~r~Mt~~eA~~~Lle~e~~ 80 (201)
+++|.+.++.|.+...++.+++ ....+++.++-+|++|++-.. .+.+-++.|.+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vl~~~~~---------------------~~~~i~~~L~~~--- 187 (249)
T PRK06136 132 THRGVARSVTFVTGHEAAGKLEPEVNWSALADGADTLVIYMGVR---------------------NLPYIAAQLLAA--- 187 (249)
T ss_pred ccCCcceeEEEEecccCCCccccccCHHHHhCCCCeEEEECCHH---------------------HHHHHHHHHHHc---
Confidence 5677777777777677777666 444578888889999854321 234555555541
Q ss_pred CCCCCCCceEEEEeecCCCCceEEeecccchhcC----CCCCCCeEEEEec
Q psy11150 81 KPGLSTADLAVGIARVGSETQHIVATSLSDMTET----NMGKPLHSLIISD 127 (201)
Q Consensus 81 ~~~~~~dt~~v~~aR~G~~dq~I~~g~l~el~~~----dfG~PlHslIIpg 127 (201)
.+.+++.++++.|+|+++|+|..+++++|... +|+.| .+||.|
T Consensus 188 --g~~~~~~~~v~~~lg~~~E~i~~~~l~el~~~~~~~~~~~~--~vviig 234 (249)
T PRK06136 188 --GRAPDTPVAIIENGTTPEQRVVRGTLGTIAEGAAAEDIQSP--AIIVIG 234 (249)
T ss_pred --CCCCCCeEEEEEeCCCCCcEEEEEEHHHHHHHHHhcCCCCC--EEEEEc
Confidence 35568889999999999999999999999887 88888 444444
No 9
>PRK05991 precorrin-3B C17-methyltransferase; Provisional
Probab=97.97 E-value=4.1e-05 Score=66.35 Aligned_cols=86 Identities=15% Similarity=0.122 Sum_probs=67.1
Q ss_pred chHHHHHHHh----hCCCeeeEeeecccCCcchhHhhhccccCCCCCCCCHHHHHHHHHHHhhcCCCCCCCceEEEEeec
Q psy11150 21 SFYDKIVENK----SRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTKPGLSTADLAVGIARV 96 (201)
Q Consensus 21 S~yd~I~~N~----~~gLHTL~LLDIk~~e~~~e~~~~g~~~y~p~r~Mt~~eA~~~Lle~e~~~~~~~~dt~~v~~aR~ 96 (201)
++++.|.+++ +.++|+.++.+.+. .+.|.+.++++.|.+ .+.++..++++.|+
T Consensus 142 ~~~~~l~~~l~~~~~~~~~~vl~~~~~~-----------------~~p~~l~~~~~~L~~------~~~~~~~v~v~~~l 198 (250)
T PRK05991 142 KPWELIEKRLRLAAEAGFVIALYNPISR-----------------ARPWQLGEAFDLLRE------HLPATVPVIFGRAA 198 (250)
T ss_pred CCHHHHHHHHHhhcCCCeEEEEECCccc-----------------cchhhHHHHHHHHHh------cCCCCCEEEEEEeC
Confidence 3455555554 55888888877763 256788899888876 34557889999999
Q ss_pred CCCCceEEeecccchhcCCCCCCCeEEEEecCCC
Q psy11150 97 GSETQHIVATSLSDMTETNMGKPLHSLIISDESK 130 (201)
Q Consensus 97 G~~dq~I~~g~l~el~~~dfG~PlHslIIpg~lH 130 (201)
|+++|+|..++++++...+|+ .++++||++.+.
T Consensus 199 g~~dE~i~~~~l~el~~~~~~-~~s~vivg~~~~ 231 (250)
T PRK05991 199 GRPDERIAVAPLAEADASMAD-MATCVIIGSAET 231 (250)
T ss_pred CCCCcEEEEEEHHHhhhhccC-CCeEEEECCCcc
Confidence 999999999999999988885 668999888764
No 10
>PRK10637 cysG siroheme synthase; Provisional
Probab=97.78 E-value=0.00012 Score=68.76 Aligned_cols=98 Identities=23% Similarity=0.217 Sum_probs=66.5
Q ss_pred CcCCceeEeeccCCCcccCchHHHHHHHhhCCCeeeEeeecccCCcchhHhhhccccCCCCCCCCHHHHHHHHHHHhhcC
Q psy11150 2 YNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTK 81 (201)
Q Consensus 2 YrFG~tvSIpf~~~~~~P~S~yd~I~~N~~~gLHTL~LLDIk~~e~~~e~~~~g~~~y~p~r~Mt~~eA~~~Lle~e~~~ 81 (201)
|.|+.+-++.+++..+++.+.++ ..++.++.||+||++-.- .+.+-++.|.+
T Consensus 345 ~~~~~~~~~~vis~h~~~~~~~~--~~~l~~~~~t~Vl~~~~~---------------------~~~~i~~~L~~----- 396 (457)
T PRK10637 345 THRDYAQSVRLVTGHLKTGGELD--WENLAAEKQTLVFYMGLN---------------------QAATIQQKLIE----- 396 (457)
T ss_pred ccCCceeeEEEEeCccCCCCccC--HHHHhCCCCeEEEECCHh---------------------hHHHHHHHHHh-----
Confidence 45565455555566776666544 367788889999854211 23334444432
Q ss_pred CCCCCCceEEEEeecCCCCceEEeecccchhc--CCCCCCCeEEEEecCC
Q psy11150 82 PGLSTADLAVGIARVGSETQHIVATSLSDMTE--TNMGKPLHSLIISDES 129 (201)
Q Consensus 82 ~~~~~dt~~v~~aR~G~~dq~I~~g~l~el~~--~dfG~PlHslIIpg~l 129 (201)
..+.+++.+++++|+|+++|+|..++++++.+ .+|+.| ++||.|+.
T Consensus 397 ~g~~~~~~v~v~e~l~~~~E~i~~~tl~el~~~~~~~~~~--~viiig~~ 444 (457)
T PRK10637 397 HGMPADMPVALVENGTSVTQRVVSGTLTQLGELAQQVNSP--SLIIVGRV 444 (457)
T ss_pred cCCCCCCcEEEEEeCCCCCcEEEEEEHHHHHHHHhcCCCC--EEEEEChh
Confidence 23456788899999999999999999999985 477655 66777753
No 11
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=97.43 E-value=0.00098 Score=56.05 Aligned_cols=57 Identities=21% Similarity=0.294 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCceEEeecccchhcC--CCCCCCeEEEEecC
Q psy11150 67 VSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATSLSDMTET--NMGKPLHSLIISDE 128 (201)
Q Consensus 67 ~~eA~~~Lle~e~~~~~~~~dt~~v~~aR~G~~dq~I~~g~l~el~~~--dfG~PlHslIIpg~ 128 (201)
+.+.++.|.+. .+.+++.++++.|+|+++|+|..++++++.+. +.+.+.+++||.|+
T Consensus 167 ~~~i~~~L~~~-----g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~~~~~~~~~~ivvg~ 225 (229)
T TIGR01465 167 LDKVVKELIEG-----GYSEDTPVAVVYRATWPDEKIVRGTLADLADLVREEGIYRTTLILVGP 225 (229)
T ss_pred HHHHHHHHHHc-----CcCCCCcEEEEEeCCCCCcEEEEEEHHHHHHHHHhcCCCCCEEEEECc
Confidence 45666666541 35668889999999999999999999999764 46767789999886
No 12
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=97.37 E-value=0.0017 Score=53.24 Aligned_cols=80 Identities=20% Similarity=0.169 Sum_probs=61.4
Q ss_pred CcCCceeEeeccCCCcc-cCchHHHHHHHhhCCCeeeEeeecccCCcchhHhhhccccCCCCCCCCHHHHHHHHHHHhhc
Q psy11150 2 YNFGETVSIPFWTESWK-PDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKT 80 (201)
Q Consensus 2 YrFG~tvSIpf~~~~~~-P~S~yd~I~~N~~~gLHTL~LLDIk~~e~~~e~~~~g~~~y~p~r~Mt~~eA~~~Lle~e~~ 80 (201)
++++.+.++. |+ +..+-.....++..+-||+|+|+-. + .+.+.++.|++.
T Consensus 130 ~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~vil~~~-------------------~--~~~~i~~~L~~~--- 180 (210)
T PF00590_consen 130 TDGGFISLHG-----LRDLDTEREKLLENLLANGDTLVILTDP-------------------R--RLAEIAELLLER--- 180 (210)
T ss_dssp SBTTTBEEEE-----TSSSSHHHHHHHHHHHTTTSEEEEEESG-------------------C--CHHHHHHHHHHH---
T ss_pred ccCcEEEEEE-----ecccccchHHHHHHHHhCCCEEEEEccC-------------------c--hHHHHHHHHHhh---
Confidence 4566666666 22 2345677888888889999999653 2 588888888774
Q ss_pred CCCCCCCceEEEEeecCCCCceEEeecccchh
Q psy11150 81 KPGLSTADLAVGIARVGSETQHIVATSLSDMT 112 (201)
Q Consensus 81 ~~~~~~dt~~v~~aR~G~~dq~I~~g~l~el~ 112 (201)
...+++.++++.|+|+++|+|..+|++||+
T Consensus 181 --~~~~~~~v~v~~~lg~~~E~i~~~tl~ela 210 (210)
T PF00590_consen 181 --LYPPDTPVAVGERLGYPDERIFRGTLEELA 210 (210)
T ss_dssp --SHTTTSEEEEEESTTSTTEEEEEEEHHHHH
T ss_pred --CCCCCcEEEHHHhcCCCCCEEEEeEHHHcC
Confidence 124478999999999999999999999974
No 13
>PRK05787 cobalt-precorrin-6Y C(5)-methyltransferase; Validated
Probab=97.30 E-value=0.003 Score=52.30 Aligned_cols=76 Identities=16% Similarity=0.195 Sum_probs=59.3
Q ss_pred HHHHHHhhCCCeeeEeeecccCCcchhHhhhccccCCCCCCCCHHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCceE
Q psy11150 24 DKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHI 103 (201)
Q Consensus 24 d~I~~N~~~gLHTL~LLDIk~~e~~~e~~~~g~~~y~p~r~Mt~~eA~~~Lle~e~~~~~~~~dt~~v~~aR~G~~dq~I 103 (201)
+.+...+..+-|+++|.|-.. ++.+.++.|++. | ..++.+++++|+|+++|+|
T Consensus 133 ~~l~~~~~~~~~~v~l~~~~~---------------------~~~~i~~~L~~~----g--~~~~~~~v~~~l~~~~E~i 185 (210)
T PRK05787 133 EELEDLLKNGRKVIMLPDPRF---------------------GPKEIAAELLER----G--KLERRIVVGENLSYPDERI 185 (210)
T ss_pred HHHHHHHHcCCeEEEEcCCCC---------------------CHHHHHHHHHhC----C--CCCcEEEEEEeCCCCCeEE
Confidence 567888888889888876541 467777777752 3 3578899999999999999
Q ss_pred EeecccchhcCCCCCCCeEEEEec
Q psy11150 104 VATSLSDMTETNMGKPLHSLIISD 127 (201)
Q Consensus 104 ~~g~l~el~~~dfG~PlHslIIpg 127 (201)
..++++++...+|+ .+.+++++.
T Consensus 186 ~~~~l~~~~~~~~~-~~s~v~v~~ 208 (210)
T PRK05787 186 HKLTLSEIEPLEFS-DMSVVVILD 208 (210)
T ss_pred EeCCHHHHhhcccC-CcEEEEEec
Confidence 99999999888875 556777653
No 14
>PLN02625 uroporphyrin-III C-methyltransferase
Probab=97.02 E-value=0.0055 Score=53.50 Aligned_cols=90 Identities=20% Similarity=0.269 Sum_probs=61.1
Q ss_pred EeeccCCCcccCchHH-HHHHHhhCCCeeeEeeecccCCcchhHhhhccccCCCCCCCCHHHHHHHHHHHhhcCCCCCCC
Q psy11150 9 SIPFWTESWKPDSFYD-KIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTKPGLSTA 87 (201)
Q Consensus 9 SIpf~~~~~~P~S~yd-~I~~N~~~gLHTL~LLDIk~~e~~~e~~~~g~~~y~p~r~Mt~~eA~~~Lle~e~~~~~~~~d 87 (201)
++.|-+..+++.+..+ .+.+.+..+-+|+|++.-. -.+.+.++.|.+ ..+.++
T Consensus 151 ~~~i~s~h~~~~~~~~~~~~~~~~~~~~t~vl~~~~---------------------~~~~~i~~~L~~-----~g~~~~ 204 (263)
T PLN02625 151 SVRFLTGHDREGGTDPLDVAEAAADPDTTLVVYMGL---------------------GTLPSLAEKLIA-----AGLPPD 204 (263)
T ss_pred eEEEEecccCCCcccchhhHHHHhCCCCeEEEECch---------------------hhHHHHHHHHHH-----cCCCCC
Confidence 3444445566554333 2445666677899987521 146677777765 235568
Q ss_pred ceEEEEeecCCCCceEEeecccchhc----CCCCCCCeEEEE
Q psy11150 88 DLAVGIARVGSETQHIVATSLSDMTE----TNMGKPLHSLII 125 (201)
Q Consensus 88 t~~v~~aR~G~~dq~I~~g~l~el~~----~dfG~PlHslII 125 (201)
+.++++.|+|+++|+|..++++++.+ .+++.| +.+||
T Consensus 205 ~~v~v~e~l~~~~E~i~~~tl~el~~~~~~~~~~~~-~vvii 245 (263)
T PLN02625 205 TPAAAVERGTTPEQRVVFGTLEDIAEDVAAAGLVSP-TVIVV 245 (263)
T ss_pred CeEEEEEECCCCCcEEEEEEHHHHHHHHHhcCCCCC-EEEEE
Confidence 89999999999999999999999987 556554 55555
No 15
>TIGR01466 cobJ_cbiH precorrin-3B C17-methyltransferase. This model represents precorrin-3B C17-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-4 C11-methyltransferase, EC 2.1.1.133). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products. Members of this family may appear as fusion proteins with other enzymes of cobalamin biosynthesis.
Probab=96.75 E-value=0.0096 Score=50.67 Aligned_cols=58 Identities=19% Similarity=0.229 Sum_probs=45.6
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCceEEeecccchhcCCCCCCCeEEEEec
Q psy11150 63 RFMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATSLSDMTETNMGKPLHSLIISD 127 (201)
Q Consensus 63 r~Mt~~eA~~~Lle~e~~~~~~~~dt~~v~~aR~G~~dq~I~~g~l~el~~~dfG~PlHslIIpg 127 (201)
+.+++.+.++.|.+ ....++.++++.|+|+++|+|..++++++.+.+|+.| .++||+.
T Consensus 165 ~~~~~~~i~~~L~~------~~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~~~~-s~iii~~ 222 (239)
T TIGR01466 165 RPEQFRRAMEILLE------HRKPDTPVGIVRNAGREGEEVEITTLAELDEELIDML-TTVIIGN 222 (239)
T ss_pred hhhhHHHHHHHHHh------cCCCCCEEEEEEECCCCCeEEEEEEHHHHhhcCCCCC-eEEEECC
Confidence 46788888887765 2344788999999999999999999999988777544 6666654
No 16
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=95.65 E-value=0.053 Score=48.45 Aligned_cols=99 Identities=17% Similarity=0.265 Sum_probs=63.9
Q ss_pred ceeEeeccCCCcccCchHHHHHHHhhCCCeeeEeeecccCCcchhHhhhccccCCCCCCCCHHHHHHHHHHHhhcCCCCC
Q psy11150 6 ETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTKPGLS 85 (201)
Q Consensus 6 ~tvSIpf~~~~~~P~S~yd~I~~N~~~gLHTL~LLDIk~~e~~~e~~~~g~~~y~p~r~Mt~~eA~~~Lle~e~~~~~~~ 85 (201)
+||-|+.+... .|.-.=|.+.+=.+.|.-.-++|-+. -+...++.|++ |.+.
T Consensus 133 QtvilTR~sgr-t~vpe~e~l~~la~~~aTm~I~L~v~----------------------~I~~vv~~L~~-----g~y~ 184 (254)
T COG2875 133 QTVILTRPSGR-TPVPEKESLAALAKHGATMVIFLGVH----------------------AIDKVVEELLE-----GGYP 184 (254)
T ss_pred eeEEEEccccC-CCCCchhHHHHHHhcCceeEeeehhh----------------------HHHHHHHHHhc-----CCCC
Confidence 45555554433 34334555555555555444445443 23445555544 7899
Q ss_pred CCceEEEEeecCCCCceEEeecccchhc--CCCCCCCeEEEEecC-CChh
Q psy11150 86 TADLAVGIARVGSETQHIVATSLSDMTE--TNMGKPLHSLIISDE-SKIK 132 (201)
Q Consensus 86 ~dt~~v~~aR~G~~dq~I~~g~l~el~~--~dfG~PlHslIIpg~-lH~q 132 (201)
+||.+.++-|++||||+|.-|||+++.. .+=|=---.+||.|+ |.++
T Consensus 185 ~dtPVaVV~rAsWpDe~ii~GTL~dIa~kv~~~~i~rTAlIiVG~~l~~~ 234 (254)
T COG2875 185 PDTPVAVVYRASWPDEKIIRGTLEDIAEKVKEAGIRRTALIIVGDVLDPE 234 (254)
T ss_pred CCCCEEEEEecCCCcccEEEeeHHHHHHHHHhcCceeEEEEEEccccCcC
Confidence 9999999999999999999999999976 233444457777775 4433
No 17
>PRK15478 cbiH cobalt-precorrin-3B C(17)-methyltransferase; Provisional
Probab=95.44 E-value=0.031 Score=48.66 Aligned_cols=44 Identities=20% Similarity=0.212 Sum_probs=36.1
Q ss_pred CCCCCceEEEEeecCCCCceEEeecccchhcCCCCCCCeEEEEecC
Q psy11150 83 GLSTADLAVGIARVGSETQHIVATSLSDMTETNMGKPLHSLIISDE 128 (201)
Q Consensus 83 ~~~~dt~~v~~aR~G~~dq~I~~g~l~el~~~dfG~PlHslIIpg~ 128 (201)
.+.+||.|..+.++++++|++..+||++|....+ ...++||-|+
T Consensus 180 g~~~~tPvaiv~~~t~~~q~~~~~tL~~l~~~~~--~~~~liivG~ 223 (241)
T PRK15478 180 SKSAQTPVGVVKSAGRKKEEKWLTTLGDMDFEPV--DMTSLVIVGN 223 (241)
T ss_pred cCCCCCEEEEEEeCCCCCeEEEEEEHHHhhhcCC--CCceEEEECC
Confidence 5688999999999999999999999999987544 3346666664
No 18
>PRK05765 precorrin-3B C17-methyltransferase; Provisional
Probab=94.42 E-value=0.11 Score=45.15 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=34.4
Q ss_pred CCCCCceEEEEeecCCCCceEEeecccchhc--CCCCCCCeEEEEec
Q psy11150 83 GLSTADLAVGIARVGSETQHIVATSLSDMTE--TNMGKPLHSLIISD 127 (201)
Q Consensus 83 ~~~~dt~~v~~aR~G~~dq~I~~g~l~el~~--~dfG~PlHslIIpg 127 (201)
.+.+++.+..+.++|+++|++..+|+++|.+ ..++.| .++||+.
T Consensus 179 ~~~~~~pv~vv~~~t~~~E~i~~~tL~~l~~~~~~~~~~-~~iiVg~ 224 (246)
T PRK05765 179 HRKPNTPVGLVKSAYRNNENVVITTLSSWKEHMDEIGMT-TTMIIGN 224 (246)
T ss_pred cCCCCCEEEEEEeCCCCCeEEEEEEHHHhhhhhhcCCCc-eEEEECC
Confidence 4577999999999999999999999999864 234544 5555554
No 19
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=93.50 E-value=0.17 Score=48.46 Aligned_cols=53 Identities=21% Similarity=0.297 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCceEEeecccchh----cCCCCCCCeEEEEec
Q psy11150 68 SQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATSLSDMT----ETNMGKPLHSLIISD 127 (201)
Q Consensus 68 ~eA~~~Lle~e~~~~~~~~dt~~v~~aR~G~~dq~I~~g~l~el~----~~dfG~PlHslIIpg 127 (201)
++.++.|++ ....+++.+.++.|+|+++|++..+|+++|. ...|.+| ++||-|
T Consensus 176 ~~I~~~L~~-----~G~~~~tpvavv~~~t~~~Qri~~~tL~~l~~~~~~~~~~~p--avivvG 232 (474)
T PRK07168 176 PTICENLRQ-----AGKKEDTPVAVIEWGTTGKQRVVTGTLSTIVSIVKNENISNP--SMTIVG 232 (474)
T ss_pred HHHHHHHHH-----cCcCCCCeEEEEEECCCCCcEEEEEEHHHHHHHHHhcCCCCC--EEEEEC
Confidence 466666765 2356789999999999999999999999994 4456544 555555
No 20
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=93.36 E-value=0.48 Score=41.22 Aligned_cols=54 Identities=15% Similarity=0.211 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCceEEeecccchhc---CCCCCCCeEEEE
Q psy11150 67 VSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATSLSDMTE---TNMGKPLHSLII 125 (201)
Q Consensus 67 ~~eA~~~Lle~e~~~~~~~~dt~~v~~aR~G~~dq~I~~g~l~el~~---~dfG~PlHslII 125 (201)
+.+.++.|++. .+.+++.++++.|+|+++|+|..++++++.+ .+--.+|..+||
T Consensus 176 ~~~i~~~L~~~-----g~~~~~~v~v~e~l~~~~E~i~~~tl~~l~~~~~~~~~~~~~~ivv 232 (257)
T PRK15473 176 IHRVAERLIAG-----GYPATTPVAVIYKATWPESQTVRGTLADIAEKVRDAGIRKTALILV 232 (257)
T ss_pred HHHHHHHHHHc-----CCCCCCeEEEEEECCCCCcEEEEEEHHHHHHHHHhcCCCCCEEEEE
Confidence 66666666652 3556889999999999999999999999854 222244555555
No 21
>TIGR02467 CbiE precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit. This model recognizes the CbiE methylase which is responsible, in part (along with CbiT), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiT subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=93.14 E-value=0.44 Score=39.75 Aligned_cols=49 Identities=14% Similarity=0.232 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCceEEeecccchhcCCCCCC
Q psy11150 66 SVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATSLSDMTETNMGKP 119 (201)
Q Consensus 66 t~~eA~~~Lle~e~~~~~~~~dt~~v~~aR~G~~dq~I~~g~l~el~~~dfG~P 119 (201)
++.+-++.|.+. | +.+.+.++++.|+|+++|+|..++++++....|..+
T Consensus 151 ~~~~i~~~L~~~----g-~~~~~~v~v~~~l~~~~E~i~~~tl~el~~~~~~~~ 199 (204)
T TIGR02467 151 GPAEIARELIEL----G-IGGSYELTVGENLGYEDERITEGTLEEIAAAQFDFS 199 (204)
T ss_pred CHHHHHHHHHHC----C-CCCCeEEEEEcccCCCCeEEEeCCHHHHhhcccCCc
Confidence 566666666542 2 344668999999999999999999999987644444
No 22
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=92.08 E-value=0.25 Score=43.04 Aligned_cols=60 Identities=17% Similarity=0.307 Sum_probs=46.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCceEEeecccchhcCCCCCCCeEEEEe
Q psy11150 59 YLPPRFMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATSLSDMTETNMGKPLHSLIIS 126 (201)
Q Consensus 59 y~p~r~Mt~~eA~~~Lle~e~~~~~~~~dt~~v~~aR~G~~dq~I~~g~l~el~~~dfG~PlHslIIp 126 (201)
..|.+||+.. -++.|.+ ..++ ++.++++.|+|.++++|..++++++...+| .|++.++|-
T Consensus 146 l~~~~~~P~~-IA~~L~~-----~G~~-~~~~~VlE~L~~~~Eri~~~~~~~~~~~~f-sdlnVv~v~ 205 (210)
T COG2241 146 LTPDDFGPAE-IAKLLTE-----NGIG-DSRVTVLENLGYPDERITDGTAEDIAAEEF-SDLNVVAVE 205 (210)
T ss_pred eCCCCCCHHH-HHHHHHh-----CCCC-CceEEEEcccCCCchhhhcCchhhhccccc-CCceEEEEE
Confidence 3445566544 4455655 2455 799999999999999999999999999886 788888874
No 23
>COG0007 CysG Uroporphyrinogen-III methylase [Coenzyme metabolism]
Probab=87.13 E-value=2.8 Score=37.42 Aligned_cols=60 Identities=27% Similarity=0.347 Sum_probs=43.1
Q ss_pred CCCHHHHH---HHHHHHhhcCCCCCCCceEEEEeecCCCCceEEeecccchhcCC--CCCCCeEEEEecC
Q psy11150 64 FMSVSQAA---QQLVEITKTKPGLSTADLAVGIARVGSETQHIVATSLSDMTETN--MGKPLHSLIISDE 128 (201)
Q Consensus 64 ~Mt~~eA~---~~Lle~e~~~~~~~~dt~~v~~aR~G~~dq~I~~g~l~el~~~d--fG~PlHslIIpg~ 128 (201)
||-.+.+. +.|++ ...+++|.+..+.+..+++|++..+||++|.+.. .+-.+=+|||-|+
T Consensus 168 ~Mg~~~l~~i~~~Li~-----~G~~~~tpvAvi~~gt~~~Qr~~~gtL~~l~~~~~~~~~~~PaiiviG~ 232 (244)
T COG0007 168 LMGASRLAEIARELIA-----HGRSPDTPVAVIENGTTPDQRVVVGTLGDLAELAEEAGLTPPALIVIGE 232 (244)
T ss_pred EeCcchHHHHHHHHHH-----cCCCCCCCEEEEEcCCCcceEEEEeEHHHHHHHHHhcCCCCCEEEEEcc
Confidence 56555544 44544 2447789999999999999999999999997732 3333336777775
No 24
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=86.69 E-value=6.1 Score=35.66 Aligned_cols=105 Identities=14% Similarity=0.094 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCceEEeecccchhcCC----CC-CCCeEEEEecCCChhHHHHHHHHH
Q psy11150 67 VSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATSLSDMTETN----MG-KPLHSLIISDESKIKDLLEKEKLI 141 (201)
Q Consensus 67 ~~eA~~~Lle~e~~~~~~~~dt~~v~~aR~G~~dq~I~~g~l~el~~~d----fG-~PlHslIIpg~lH~qeL~~~~~~l 141 (201)
+.-..+.|.++.+ .+.+++.++.+.++|...|.+..|+++++.+.- .. ..--+|||-+.-. + ...+
T Consensus 172 p~R~~~~l~~l~~---~~g~~~~v~i~relTk~~E~~~~g~~~~i~~~~~~~~~~~kGE~vivi~~~~~--~----~~~~ 242 (287)
T PRK14994 172 THRLLDSLEDIVA---VLGESRYVVLARELTKTWETIHGAPVGELLAWVKEDENRRKGEMVLIVEGHKA--Q----EDDL 242 (287)
T ss_pred ChhHHHHHHHHHH---hcCCCCeEEEEeeccCCCCcEEeeEHHHHHHHHHhcCCCCCceEEEEEeCCcc--c----cccc
Confidence 3444444444432 456678889999999999999999999996621 10 2235677755211 1 0111
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhcCCcHHHHHHHh
Q psy11150 142 DEELAHLEQAVEIRDVVMSKLHEYNDIKDATQIVIGTLANLQQVTVRKLHEDF 194 (201)
Q Consensus 142 ~~e~~~l~~~~~~~~~~i~lLh~YNeiKD~~q~l~g~iA~~~gvt~~~v~~e~ 194 (201)
+.+ . .++++++.+--..||++ ..+|...|.+-+++|+.+
T Consensus 243 ~~~---------~-~~~~~~~~~~~~~k~a~----~~~a~~~~~~k~~~Y~~~ 281 (287)
T PRK14994 243 PAD---------A-LRTLALLQAELPLKKAA----ALAAEIHGVKKNALYKYA 281 (287)
T ss_pred chh---------H-HHHHHHHHcCCCHHHHH----HHHHHHHCcCHHHHHHHH
Confidence 111 0 11233343333677776 478999999999999864
No 25
>PRK05576 cobalt-precorrin-2 C(20)-methyltransferase; Validated
Probab=80.33 E-value=8.4 Score=32.74 Aligned_cols=34 Identities=21% Similarity=0.121 Sum_probs=27.1
Q ss_pred eEEEEeecCCCCceEEeecccchhcCCCCCCCeEEEEe
Q psy11150 89 LAVGIARVGSETQHIVATSLSDMTETNMGKPLHSLIIS 126 (201)
Q Consensus 89 ~~v~~aR~G~~dq~I~~g~l~el~~~dfG~PlHslIIp 126 (201)
.++++.|+|+++|+|..++..++. + .|.-|+||.
T Consensus 191 ~v~v~e~l~~~~E~i~~~~~~~~~--~--~~y~s~ii~ 224 (229)
T PRK05576 191 DALYVRRAYMEGEQILRRLEEILD--D--LDYFSTIIA 224 (229)
T ss_pred CEEEEEECCCCCeEEEccccccCC--C--CCeeEEEEE
Confidence 788999999999999999888763 2 366677663
No 26
>PF01371 Trp_repressor: Trp repressor protein; InterPro: IPR000831 The Trp repressor (TrpR) binds to at least five operators in the Escherichia coli genome, repressing gene expression. The operators at which it binds vary considerably in DNA sequence and location within the promoter; when bound to the Trp operon it recognises the sequence 5'-ACTAGT-3' and acts to prevent the initiation of transcription. The TrpR controls the trpEDCBA (trpO) operon and the genes for trpR, aroH, mtr and aroL, which are involved in the biosynthesis and uptake of the amino acid tryptophan []. The repressor binds to the operators only in the presence of L-tryptophan, thereby controlling the intracellular level of its effector; the complex also regulates Trp repressor biosynthesis by binding to its own regulatory region. TrpR acts as a dimer that is composed of identical 6-helical subunits, where four of the helices form the core of the protein and intertwine with the corresponding helices from the other subunit.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3FRW_H 3KOR_A 3SSW_N 1P6Z_N 1CO0_B 1JHG_A 1WRT_S 1WRS_R 1WRP_R 1RCS_B ....
Probab=75.14 E-value=16 Score=27.79 Aligned_cols=56 Identities=16% Similarity=0.153 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH---hcCCcHHHHHHHhCCCC
Q psy11150 140 LIDEELAHLEQAVEIRDVVMSKLHEYNDIKDATQIVIGTLAN---LQQVTVRKLHEDFGLDK 198 (201)
Q Consensus 140 ~l~~e~~~l~~~~~~~~~~i~lLh~YNeiKD~~q~l~g~iA~---~~gvt~~~v~~e~gl~~ 198 (201)
+|.+-+..++++++ ....-..|=.-+|+++++|++- ||. ..|.|.++|.++.|++.
T Consensus 5 ~l~~~i~~l~~~ee-~~~f~~dL~T~~E~~~l~~R~~--va~~lL~~g~syreIa~~tgvS~ 63 (87)
T PF01371_consen 5 ELFEAILSLKDEEE-CYDFFEDLCTPDELEALAQRWQ--VAKELLDEGKSYREIAEETGVSI 63 (87)
T ss_dssp HHHHHHHCHHCHHC-HHHHHHHHSSHHHHHHHHHHHH--HHHHHHHTTSSHHHHHHHHTSTH
T ss_pred HHHHHHHHcCCHHH-HHHHHHHhCCHHHHHHHHHHHH--HHHHHHHCCCCHHHHHHHhCCCH
Confidence 33344444444433 3457788889999999999973 454 48999999999999874
No 27
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=71.63 E-value=4.8 Score=29.50 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=16.2
Q ss_pred CCCeEEEEecCCChhHHHHHH
Q psy11150 118 KPLHSLIISDESKIKDLLEKE 138 (201)
Q Consensus 118 ~PlHslIIpg~lH~qeL~~~~ 138 (201)
.|-|+||||-+ |..+|.+..
T Consensus 25 ~~gh~LVipk~-H~~~l~dl~ 44 (98)
T PF01230_consen 25 SPGHLLVIPKR-HVESLSDLP 44 (98)
T ss_dssp STTEEEEEESS-TGSSGGGSH
T ss_pred CCeEEEEEecc-cccchhcCC
Confidence 58899999977 888777655
No 28
>KOG4603|consensus
Probab=68.19 E-value=46 Score=28.91 Aligned_cols=70 Identities=14% Similarity=0.189 Sum_probs=50.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhH----------------HHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhcCCcHHHHH
Q psy11150 128 ESKIKDLLEKEKLIDEELAHLEQA----------------VEIRDVVMSKLHEYNDIKDATQIVIGTLANLQQVTVRKLH 191 (201)
Q Consensus 128 ~lH~qeL~~~~~~l~~e~~~l~~~----------------~~~~~~~i~lLh~YNeiKD~~q~l~g~iA~~~gvt~~~v~ 191 (201)
-|+..++++.-+.|+.|++..+.. ++.-+.+-+.-.++-++|.+.-.++.++-+---...+++|
T Consensus 115 ~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~~~~~~wrk~krmf~ei~d~~~e~~pk~ksel~ 194 (201)
T KOG4603|consen 115 ALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQKYCKEWRKRKRMFREIIDKLLEGLPKKKSELY 194 (201)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHH
Confidence 466667777777777766654431 1222234456677888899999999999998888999999
Q ss_pred HHhCCC
Q psy11150 192 EDFGLD 197 (201)
Q Consensus 192 ~e~gl~ 197 (201)
+|+|+.
T Consensus 195 eelGIE 200 (201)
T KOG4603|consen 195 EELGIE 200 (201)
T ss_pred HHhCcC
Confidence 999985
No 29
>PF08902 DUF1848: Domain of unknown function (DUF1848); InterPro: IPR014998 This group of proteins are functionally uncharacterised. The C terminus contains a cluster of cysteines that are similar to the iron-sulphur cluster found at the N terminus of IPR007197 from INTERPRO.
Probab=67.59 E-value=57 Score=29.55 Aligned_cols=136 Identities=18% Similarity=0.267 Sum_probs=87.0
Q ss_pred eEeeccCCCcccCchHHHHHHHhhCCCeeeEeeecccCCcchhHhhhccccCCCCCCCCHHHHHHHHHHHhhcCCCCCCC
Q psy11150 8 VSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTKPGLSTA 87 (201)
Q Consensus 8 vSIpf~~~~~~P~S~yd~I~~N~~~gLHTL~LLDIk~~e~~~e~~~~g~~~y~p~r~Mt~~eA~~~Lle~e~~~~~~~~d 87 (201)
=.|+||+.|-.| +.+.+.+=.++|.|..+..=|..=+.++| |.--+..++++.+.++.+.- .++
T Consensus 49 d~iVFWTKnp~P--~l~~L~~l~~~gy~~yfq~Tit~Y~~~lE-----------p~vP~~~~~i~~f~~Ls~~i---G~~ 112 (266)
T PF08902_consen 49 DCIVFWTKNPAP--FLPYLDELDERGYPYYFQFTITGYGKDLE-----------PNVPPKDERIETFRELSERI---GPE 112 (266)
T ss_pred eEEEEecCCcHH--HHhhHHHHHhCCCceEEEEEeCCCCcccc-----------CCCCCHHHHHHHHHHHHHHH---CCC
Confidence 357999999777 78888888888999999998886444333 45678999999999987642 222
Q ss_pred ceEEEEeecCCCCceEEeecccchhcCCCCCCCeEEEEecCCChhHHHHHHHHHHHHHHHHHh--------HHHHHHHHH
Q psy11150 88 DLAVGIARVGSETQHIVATSLSDMTETNMGKPLHSLIISDESKIKDLLEKEKLIDEELAHLEQ--------AVEIRDVVM 159 (201)
Q Consensus 88 t~~v~~aR~G~~dq~I~~g~l~el~~~dfG~PlHslIIpg~lH~qeL~~~~~~l~~e~~~l~~--------~~~~~~~~i 159 (201)
.+ .+- + +| ||+.++..++..++.+..|.+.++--.. .-.-+++++
T Consensus 113 rV--------------iWR-------Y---DP---Iil~~~~~~~~h~~~F~~la~~L~g~t~~~viSF~D~Y~k~~~~l 165 (266)
T PF08902_consen 113 RV--------------IWR-------Y---DP---IILTDKYTVDYHLEAFERLAEALAGYTDRCVISFLDLYRKVRRNL 165 (266)
T ss_pred cE--------------EEe-------c---CC---EeECCCCCHHHHHHHHHHHHHHHhccCCEEEEEeeeccHHHHHHH
Confidence 21 111 1 22 4556678888888899999988886433 122344555
Q ss_pred HHhh-hhhh-----hhhHHHHHHHHHHHhcCCcH
Q psy11150 160 SKLH-EYND-----IKDATQIVIGTLANLQQVTV 187 (201)
Q Consensus 160 ~lLh-~YNe-----iKD~~q~l~g~iA~~~gvt~ 187 (201)
+.+. .+.+ ..+.+.. ++.||...|.++
T Consensus 166 ~~~~~~~~~~~~~~~~~l~~~-l~~ia~~~g~~l 198 (266)
T PF08902_consen 166 ARLGFRIREPSEEEKRELAKR-LAEIAKKYGMTL 198 (266)
T ss_pred HhhcCCCCCCCHHHHHHHHHH-HHHHHHHcCCEE
Confidence 5555 2222 2222222 345666666554
No 30
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=66.90 E-value=53 Score=29.68 Aligned_cols=87 Identities=18% Similarity=0.213 Sum_probs=56.7
Q ss_pred CCCcccCchHHHHHHHh----hCCCeeeEeeecccCCcchhHhhhccccCCCCCCCCHHHHHHHHHHHhhcCCCCCCCce
Q psy11150 14 TESWKPDSFYDKIVENK----SRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTKPGLSTADL 89 (201)
Q Consensus 14 ~~~~~P~S~yd~I~~N~----~~gLHTL~LLDIk~~e~~~e~~~~g~~~y~p~r~Mt~~eA~~~Lle~e~~~~~~~~dt~ 89 (201)
++.++| ++.|++-+ +.++ .+||-.-+-+. |-=....|+++|++. -+++|.
T Consensus 136 SDlLtP---we~IekRl~aAA~adf-Vi~~YNP~s~~----------------R~~~~~~a~eil~~~------r~~~tp 189 (249)
T COG1010 136 SDLLTP---WEVIEKRLRAAAEADF-VIALYNPISKR----------------RPEQLGRAFEILREH------RSPDTP 189 (249)
T ss_pred HhcCCc---HHHHHHHHHHHhhCCE-EEEEECCcccc----------------chHHHHHHHHHHHHh------cCCCCc
Confidence 578888 55555543 3333 44554444333 223567899999883 366788
Q ss_pred EEEEeecCCCCceEEeecccchhcCCCCCCCeEEEEec
Q psy11150 90 AVGIARVGSETQHIVATSLSDMTETNMGKPLHSLIISD 127 (201)
Q Consensus 90 ~v~~aR~G~~dq~I~~g~l~el~~~dfG~PlHslIIpg 127 (201)
|..+--+|-++|.+...||++|.+.+..+=. ++||-|
T Consensus 190 VgivrnagR~~e~v~ittL~~l~~~~~iDM~-T~vIIG 226 (249)
T COG1010 190 VGIVRNAGREGEEVRITTLGDLDEAEEIDMR-TIVIIG 226 (249)
T ss_pred EEEEecCCCCCceEEEEEhHHhcccccccce-EEEEEc
Confidence 7777778999999999999999864444444 444444
No 31
>TIGR01467 cobI_cbiL precorrin-2 C20-methyltransferase. This model represents precorrin-2 C20-methyltransferase, one of several closely related S-adenosylmethionine-dependent methyltransferases involved in cobalamin (vitamin B12) biosynthesis.
Probab=66.73 E-value=13 Score=31.31 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=25.6
Q ss_pred eEEEEeecCCCCceEEeecccchhcCCCCCCCeEEEEe
Q psy11150 89 LAVGIARVGSETQHIVATSLSDMTETNMGKPLHSLIIS 126 (201)
Q Consensus 89 ~~v~~aR~G~~dq~I~~g~l~el~~~dfG~PlHslIIp 126 (201)
.++++.|+|+++|+|..+ ++++.+.+ -|.-|++|-
T Consensus 194 ~v~v~e~l~~~~E~i~~~-~~~~~~~~--~~y~s~~i~ 228 (230)
T TIGR01467 194 AAVVVERATMPDEKIVDL-VREAIDDA--LPYFSTILV 228 (230)
T ss_pred cEEEEEECCCCCcEEEcc-ccccCCCC--CCeeEEEEe
Confidence 478899999999999987 77773332 345566654
No 32
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=62.97 E-value=54 Score=23.95 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q psy11150 132 KDLLEKEKLIDEELAHLEQA--------VEIRDVVMSKLHEYNDIKDATQIVIGTLA 180 (201)
Q Consensus 132 qeL~~~~~~l~~e~~~l~~~--------~~~~~~~i~lLh~YNeiKD~~q~l~g~iA 180 (201)
+.+.++...|+.|++.|+.. .+....+-++=+++|..++--..|+|++=
T Consensus 14 ~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 14 QQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44555666666666666663 23333455566777777777777877764
No 33
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=56.13 E-value=23 Score=30.66 Aligned_cols=37 Identities=30% Similarity=0.478 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhh
Q psy11150 133 DLLEKEKLIDEELAHLEQAVEIRDVVMSKLHEYNDIK 169 (201)
Q Consensus 133 eL~~~~~~l~~e~~~l~~~~~~~~~~i~lLh~YNeiK 169 (201)
+|.+++.+|.+..++..|-..+.+.--++||+|=||-
T Consensus 55 eLREVREELkEKmeEIKQIKdiMDKDFDKL~EFVEIM 91 (205)
T PF15079_consen 55 ELREVREELKEKMEEIKQIKDIMDKDFDKLHEFVEIM 91 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 6888899999999999999999999999999999984
No 34
>PF04325 DUF465: Protein of unknown function (DUF465); InterPro: IPR007420 Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C-terminal of the motor domain. Members of this family may form coiled coil structures.; PDB: 1ZHC_A.
Probab=55.92 E-value=21 Score=23.80 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q psy11150 131 IKDLLEKEKLIDEELAHLEQAVEIRDVVMSKLH 163 (201)
Q Consensus 131 ~qeL~~~~~~l~~e~~~l~~~~~~~~~~i~lLh 163 (201)
|..|.+..+.|+.++..++.....-+.+++.|+
T Consensus 1 f~~L~~~h~~Ld~~I~~~e~~~~~~d~~l~~LK 33 (49)
T PF04325_consen 1 FARLFEEHHELDKEIHRLEKRPEPDDEELERLK 33 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--S-HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 678999999999999999984335555665544
No 35
>KOG0807|consensus
Probab=55.44 E-value=11 Score=34.50 Aligned_cols=71 Identities=23% Similarity=0.385 Sum_probs=41.7
Q ss_pred eEeeecccCCcchhHhhhccccCCCCCCCCHHH---HHHHHHHHhhcCCCCCCCceEEEEeecCCCCceEEeecccchhc
Q psy11150 37 LCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQ---AAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATSLSDMTE 113 (201)
Q Consensus 37 L~LLDIk~~e~~~e~~~~g~~~y~p~r~Mt~~e---A~~~Lle~e~~~~~~~~dt~~v~~aR~G~~dq~I~~g~l~el~~ 113 (201)
.|+ ||+.-|.++..=-.|-.+---|.-.|... -.+.||.+- .|...+.+|+.|..|+-+++ .
T Consensus 169 ICY-DiRFpE~sl~LR~~gA~iLtyPSAFT~~TG~AHWEiLlRAR----AietQCYVvaaaQ~G~HneK----------R 233 (295)
T KOG0807|consen 169 ICY-DIRFPELSLKLRKMGAQILTYPSAFTIKTGEAHWEILLRAR----AIETQCYVVAAAQVGKHNEK----------R 233 (295)
T ss_pred eee-eccCchHHHHHHHcCCcEEeccchhhhcccHHHHHHHHHHH----HhhcceEEEehhhcccccch----------h
Confidence 444 55555554443322433333344334333 356777753 55667899999999999984 3
Q ss_pred CCCCCCCeEEEE
Q psy11150 114 TNMGKPLHSLII 125 (201)
Q Consensus 114 ~dfG~PlHslII 125 (201)
..+| ||+||
T Consensus 234 ~SyG---hSMiV 242 (295)
T KOG0807|consen 234 ESYG---HSMIV 242 (295)
T ss_pred hccC---cceEE
Confidence 4455 77777
No 36
>KOG1527|consensus
Probab=52.94 E-value=10 Score=36.36 Aligned_cols=47 Identities=26% Similarity=0.296 Sum_probs=36.6
Q ss_pred CCCCCCceEEEEeecCCCCceEEeecccchhc--CCCCCCCeEEEEecC
Q psy11150 82 PGLSTADLAVGIARVGSETQHIVATSLSDMTE--TNMGKPLHSLIISDE 128 (201)
Q Consensus 82 ~~~~~dt~~v~~aR~G~~dq~I~~g~l~el~~--~dfG~PlHslIIpg~ 128 (201)
..+..|+.++.+.|..||||+++...|++..+ ...|.-|--++|.|+
T Consensus 436 hGwp~d~Pa~ivERgscPdQR~vf~~Lkdv~ee~~~~gs~pPglliiGk 484 (506)
T KOG1527|consen 436 HGWPSDTPAVIVERGSCPDQRTVFAELKDVAEEIQSAGSVPPGLLIIGK 484 (506)
T ss_pred cCCCCCCCeeeEeccCCchHHHHHHHHHHHHHHHHhccCCCCcEEEEee
Confidence 35777999999999999999999999999876 346664445555553
No 37
>KOG3275|consensus
Probab=51.61 E-value=12 Score=30.47 Aligned_cols=58 Identities=29% Similarity=0.291 Sum_probs=39.4
Q ss_pred CCCCCeEEEEecCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhh----hhhhhHHHH
Q psy11150 116 MGKPLHSLIISDESKIKDLLEKEKLIDEELAHLEQAVEIRDVVMSKLHEY----NDIKDATQI 174 (201)
Q Consensus 116 fG~PlHslIIpg~lH~qeL~~~~~~l~~e~~~l~~~~~~~~~~i~lLh~Y----NeiKD~~q~ 174 (201)
--.|-|.|||| +.|..++-+.++.=++.++++--....+.+-.-+-.-| |+-||.+|.
T Consensus 47 Pqap~HfLvIP-K~hi~~~s~aed~~~e~Lg~ll~~~k~vak~~Gl~~gYrvv~NnG~~g~Qs 108 (127)
T KOG3275|consen 47 PQAPGHFLVIP-KKHITQLSKAEDRDDELLGHLLPVAKKVAKALGLEDGYRVVQNNGKDGHQS 108 (127)
T ss_pred CCCCceEEEee-cccccchhhcccCCHHHHHHHHHHHHHHHHHhCcccceeEEEcCCcccceE
Confidence 35789999999 66777777777777777777776544455455555546 455666664
No 38
>PRK08284 precorrin 6A synthase; Provisional
Probab=51.07 E-value=14 Score=32.67 Aligned_cols=27 Identities=19% Similarity=0.147 Sum_probs=21.9
Q ss_pred CceEEEEeecCCCCceEEeecccchhc
Q psy11150 87 ADLAVGIARVGSETQHIVATSLSDMTE 113 (201)
Q Consensus 87 dt~~v~~aR~G~~dq~I~~g~l~el~~ 113 (201)
+..++.++|+|+++|+|..++++++.+
T Consensus 200 ~~~v~v~e~l~~p~E~I~~~~l~ei~~ 226 (253)
T PRK08284 200 DLEIWWGAYLGTPDEILIAGPLAEVAE 226 (253)
T ss_pred CCEEEEEecCCCCCeEEEEccHHHHHH
Confidence 567888889999999998888877643
No 39
>PF04009 DUF356: Protein of unknown function (DUF356); InterPro: IPR007154 Members of this family are around 120 amino acids in length and are found in some archaebacteria. The function of this family is unknown. However it contains a conserved motif IHPPAH that may be involved in its function.
Probab=50.60 E-value=55 Score=26.07 Aligned_cols=75 Identities=21% Similarity=0.244 Sum_probs=47.2
Q ss_pred ccCCCCCCCCHHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCceEEeecccchhcCCCCCCCeEEEEecC-CChhHHH
Q psy11150 57 RQYLPPRFMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATSLSDMTETNMGKPLHSLIISDE-SKIKDLL 135 (201)
Q Consensus 57 ~~y~p~r~Mt~~eA~~~Lle~e~~~~~~~~dt~~v~~aR~G~~dq~I~~g~l~el~~~dfG~PlHslIIpg~-lH~qeL~ 135 (201)
++---||.|.++-|=+.+-++-.. -+...+.+-+++++.-+..+ ..+.+.+ .-+|-|.+||+.+ =-+.+|.
T Consensus 26 ~i~gkPrii~p~~AD~i~~~ilg~--~lr~~~k~A~lv~v~~~~~~-aI~~lrk-----IHPPAHIiVis~~~~~y~eL~ 97 (107)
T PF04009_consen 26 KIRGKPRIIPPEYADWILEKILGE--PLRKKCKAAALVKVEEDATK-AIDRLRK-----IHPPAHIIVISPRHDVYEELL 97 (107)
T ss_pred eEecCCcccChHHHHHHHHHHhCC--ccccccchheEEEecCCchh-HHHHHhh-----cCCCceEEEECCCchHHHHHH
Confidence 333458999998888777766422 14445666777888765544 2333333 4699999999986 3345555
Q ss_pred HHHH
Q psy11150 136 EKEK 139 (201)
Q Consensus 136 ~~~~ 139 (201)
+.+.
T Consensus 98 ~~~~ 101 (107)
T PF04009_consen 98 EMFG 101 (107)
T ss_pred HHhh
Confidence 5444
No 40
>PRK11415 hypothetical protein; Provisional
Probab=50.40 E-value=12 Score=27.30 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=21.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHh
Q psy11150 128 ESKIKDLLEKEKLIDEELAHLEQ 150 (201)
Q Consensus 128 ~lH~qeL~~~~~~l~~e~~~l~~ 150 (201)
.-||.+|.+..+.|+.++..+++
T Consensus 16 D~~F~~L~~~h~~Ld~~I~~lE~ 38 (74)
T PRK11415 16 NPRFMSLFDKHNKLDHEIARKEG 38 (74)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHc
Confidence 47999999999999999999998
No 41
>PRK01381 Trp operon repressor; Provisional
Probab=50.31 E-value=1.1e+02 Score=23.86 Aligned_cols=54 Identities=15% Similarity=0.260 Sum_probs=39.6
Q ss_pred HHHHHHHhH--HHHHHHHHHHhhhhhhhhhHHHHHHHHHHH--hcC-CcHHHHHHHhCCCC
Q psy11150 143 EELAHLEQA--VEIRDVVMSKLHEYNDIKDATQIVIGTLAN--LQQ-VTVRKLHEDFGLDK 198 (201)
Q Consensus 143 ~e~~~l~~~--~~~~~~~i~lLh~YNeiKD~~q~l~g~iA~--~~g-vt~~~v~~e~gl~~ 198 (201)
+-+..+.+. .+......++|=...|.+.+++++ .|+. ++| +|.++|.+++|++.
T Consensus 11 ~~v~ll~~a~~~~~~~~~l~~llTp~Er~al~~R~--~I~~~L~~g~~sQREIa~~lGvSi 69 (99)
T PRK01381 11 RFVDLLKQAFEEDLHLPLLTLLLTPDEREALGTRV--RIVEELLRGELSQREIKQELGVGI 69 (99)
T ss_pred HHHHHHHHhccHHHHHHHHHHhCCHHHHHHHHHHH--HHHHHHHcCCcCHHHHHHHhCCce
Confidence 334444442 444557888888999999999987 4555 365 99999999999985
No 42
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=49.95 E-value=27 Score=24.26 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=37.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh-hhhhhhhhHHHHHHHHH
Q psy11150 128 ESKIKDLLEKEKLIDEELAHLEQAVEIRDVVMSKL-HEYNDIKDATQIVIGTL 179 (201)
Q Consensus 128 ~lH~qeL~~~~~~l~~e~~~l~~~~~~~~~~i~lL-h~YNeiKD~~q~l~g~i 179 (201)
-....++.+..++++.+++.+.+..+-.+.-|+.| ..-..|.+.|..-+|++
T Consensus 16 ~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm~ 68 (80)
T PF04977_consen 16 YSRYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLGMV 68 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCc
Confidence 45566777778888888888888888888888888 66666666666544443
No 43
>COG4634 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.85 E-value=41 Score=26.99 Aligned_cols=32 Identities=16% Similarity=0.297 Sum_probs=22.0
Q ss_pred eecccchhc--CCCCCCCeEEEE-ecCCChhHHHH
Q psy11150 105 ATSLSDMTE--TNMGKPLHSLII-SDESKIKDLLE 136 (201)
Q Consensus 105 ~g~l~el~~--~dfG~PlHslII-pg~lH~qeL~~ 136 (201)
...=+|+.+ .-+|.|||++.+ +|.++..++-.
T Consensus 52 vTkDsDF~~la~~~G~Ppki~wLr~gNvs~~~ie~ 86 (113)
T COG4634 52 VTKDSDFADLALTLGSPPKIVWLRCGNVSTREIEI 86 (113)
T ss_pred EEcCccHHHHHHHcCCCCeEEEEEecCCCHHHHHH
Confidence 333344433 348999999998 77899876654
No 44
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=48.70 E-value=33 Score=30.00 Aligned_cols=35 Identities=29% Similarity=0.338 Sum_probs=25.1
Q ss_pred EEEEeecCCCCceEEeecccchhcCCCCCCCeEEEEec
Q psy11150 90 AVGIARVGSETQHIVATSLSDMTETNMGKPLHSLIISD 127 (201)
Q Consensus 90 ~v~~aR~G~~dq~I~~g~l~el~~~dfG~PlHslIIpg 127 (201)
++.++|+|+++|++.. ++.++... ..|.-|+||..
T Consensus 199 ~~vv~~~~~~~E~i~~-~l~~~~~~--~~~Y~S~iiv~ 233 (238)
T PRK05948 199 ASLVERATTPEQVIYR-NLEDYPDL--RLPYFSLLIIQ 233 (238)
T ss_pred EEEEEECCCCCcEEEe-ehhhcCcC--CCCceEEEEEc
Confidence 5788999999999875 55555433 35667777764
No 45
>TIGR01321 TrpR trp operon repressor, proteobacterial. This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.
Probab=45.47 E-value=1.3e+02 Score=23.18 Aligned_cols=46 Identities=9% Similarity=0.205 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHH--HHHHHHhcCCcHHHHHHHhCCCC
Q psy11150 152 VEIRDVVMSKLHEYNDIKDATQIV--IGTLANLQQVTVRKLHEDFGLDK 198 (201)
Q Consensus 152 ~~~~~~~i~lLh~YNeiKD~~q~l--~g~iA~~~gvt~~~v~~e~gl~~ 198 (201)
.+-....++.|=...|++.+++++ ++.+- ..|+|.++|.+..|++.
T Consensus 22 ~~~l~~~l~~lLTp~E~~~l~~R~~i~~~Ll-~~~~tQrEIa~~lGiS~ 69 (94)
T TIGR01321 22 EDDMQLLLELILTRSEREDLGDRIRIVNELL-NGNMSQREIASKLGVSI 69 (94)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHhCCCh
Confidence 444556777788888988888874 33222 27899999999999974
No 46
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.70 E-value=79 Score=23.72 Aligned_cols=51 Identities=16% Similarity=0.272 Sum_probs=28.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q psy11150 129 SKIKDLLEKEKLIDEELAHLEQA-VEIRDVVMSKLHEYNDIKDATQIVIGTL 179 (201)
Q Consensus 129 lH~qeL~~~~~~l~~e~~~l~~~-~~~~~~~i~lLh~YNeiKD~~q~l~g~i 179 (201)
+...+|.++-+.|.+|.+.+... ++...++-++=.+-+--.+--+.|+|++
T Consensus 25 mEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkm 76 (79)
T COG3074 25 MEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGKM 76 (79)
T ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45567777777777777655543 2333333333344444455556666664
No 47
>TIGR02434 CobF precorrin-6A synthase (deacetylating). This model identifies CobF in High GC gram positive, alphaproteobacteria and pseudomonas-related species.
Probab=43.72 E-value=22 Score=31.32 Aligned_cols=26 Identities=12% Similarity=0.074 Sum_probs=20.1
Q ss_pred CceEEEEeecCCCCceEEeecccchh
Q psy11150 87 ADLAVGIARVGSETQHIVATSLSDMT 112 (201)
Q Consensus 87 dt~~v~~aR~G~~dq~I~~g~l~el~ 112 (201)
+..++.++|+|+++|+|..++++++.
T Consensus 199 ~~~~~v~e~lg~pdE~I~~~~l~~l~ 224 (249)
T TIGR02434 199 DIDIYWGAYLGTPDEILISGPLAEVG 224 (249)
T ss_pred CCEEEEEEeCCCCCeEEEEccHHHHH
Confidence 55678888999999998877776653
No 48
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=41.68 E-value=25 Score=28.61 Aligned_cols=26 Identities=27% Similarity=0.521 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHhcCCcHHHHHHHhC
Q psy11150 170 DATQIVIGTLANLQQVTVRKLHEDFG 195 (201)
Q Consensus 170 D~~q~l~g~iA~~~gvt~~~v~~e~g 195 (201)
+....|+..+|+..|+|..++++.||
T Consensus 46 ~~~~~lv~a~a~~~g~~~~~~l~~fG 71 (171)
T PF07700_consen 46 EETYKLVEAAAEVTGISVEELLEEFG 71 (171)
T ss_dssp HHHHHHHHHHHHHHTS-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 35889999999999999999999998
No 49
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=39.14 E-value=85 Score=22.36 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhH
Q psy11150 128 ESKIKDLLEKEKLIDEELAHLEQA 151 (201)
Q Consensus 128 ~lH~qeL~~~~~~l~~e~~~l~~~ 151 (201)
.|++.+|.+.-..|+.||++++++
T Consensus 20 ~lSv~EL~~RIa~L~aEI~R~~~~ 43 (59)
T PF06698_consen 20 LLSVEELEERIALLEAEIARLEAA 43 (59)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999875
No 50
>PF14287 DUF4368: Domain of unknown function (DUF4368)
Probab=37.67 E-value=48 Score=24.03 Aligned_cols=37 Identities=30% Similarity=0.428 Sum_probs=29.0
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q psy11150 143 EELAHLEQAVEIRDVVMSKLHEYNDIKDATQIVIGTL 179 (201)
Q Consensus 143 ~e~~~l~~~~~~~~~~i~lLh~YNeiKD~~q~l~g~i 179 (201)
|+++..++..+-++++++++++|=+++..+-.++-.+
T Consensus 1 q~l~~~~~~~~d~~~Fi~~i~kYt~i~ELt~~il~el 37 (71)
T PF14287_consen 1 QELSEEEQKSEDVDKFIELIRKYTDITELTPEILNEL 37 (71)
T ss_pred ChhHHHHHHHhhHHHHHHHHHHhCChhhCCHHHHHHH
Confidence 3566666777778899999999999998877666544
No 51
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=37.35 E-value=48 Score=26.53 Aligned_cols=32 Identities=28% Similarity=0.344 Sum_probs=22.9
Q ss_pred CCCCeEEEEecCCChhHHHHHHHHHHHHHHHHH
Q psy11150 117 GKPLHSLIISDESKIKDLLEKEKLIDEELAHLE 149 (201)
Q Consensus 117 G~PlHslIIpg~lH~qeL~~~~~~l~~e~~~l~ 149 (201)
=.|.|+||||- -|+.++.+...+...++-..-
T Consensus 33 ~~~gH~LviPk-~h~~~l~~l~~~~~~~l~~~~ 64 (138)
T COG0537 33 AAPGHTLVIPK-RHVSDLEDLDPEELAELFLLA 64 (138)
T ss_pred CCCCeEEEEec-cchhhhhhCCHHHHHHHHHHH
Confidence 46789999996 888888776666555554433
No 52
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=36.91 E-value=2.6e+02 Score=23.65 Aligned_cols=29 Identities=14% Similarity=0.244 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHhcCCcHHHHHHHhCCCC
Q psy11150 170 DATQIVIGTLANLQQVTVRKLHEDFGLDK 198 (201)
Q Consensus 170 D~~q~l~g~iA~~~gvt~~~v~~e~gl~~ 198 (201)
|---.|.+-+...-|+.-+++.++||++.
T Consensus 156 DNI~~l~~~~~~k~~~~~~~i~k~f~Ip~ 184 (188)
T PF03962_consen 156 DNIFSLKSYLKKKFGMDEEDIRKEFGIPE 184 (188)
T ss_pred hhHHHHHHHHHHhcCCCHHHHHHHcCCcc
Confidence 33445677788889999999999999985
No 53
>COG1844 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.38 E-value=30 Score=28.16 Aligned_cols=76 Identities=18% Similarity=0.222 Sum_probs=44.0
Q ss_pred ccCCCCCCCCHHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCceEEeecccchhcCCCCCCCeEEEEecCCC-hhHHH
Q psy11150 57 RQYLPPRFMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATSLSDMTETNMGKPLHSLIISDESK-IKDLL 135 (201)
Q Consensus 57 ~~y~p~r~Mt~~eA~~~Lle~e~~~~~~~~dt~~v~~aR~G~~dq~I~~g~l~el~~~dfG~PlHslIIpg~lH-~qeL~ 135 (201)
++---||-|.++-|=+.+-++- |..-..+.+-++|++--+..+ ..+.+.+ .-+|-|.+||+.+-+ +.+|.
T Consensus 28 ki~gkPrii~p~~aD~~~~~il---Ge~R~k~~~aa~a~v~~~a~~-aI~rIr~-----IHPPAHiIVIs~r~dvy~el~ 98 (125)
T COG1844 28 KIRGKPRIIPPELADEILSSIL---GEVRKKCKVAAVAEVEEPASK-AIGRIRK-----IHPPAHIIVISPRHDVYKELL 98 (125)
T ss_pred eeecCCcccChhhHHHHHHHHH---HHHhcccchhheeeecCccHH-HHHHHHh-----cCCCceEEEeCCCchHHHHHH
Confidence 3333488888876666555542 122223455666777665554 2334433 479999999987643 45555
Q ss_pred HHHHHH
Q psy11150 136 EKEKLI 141 (201)
Q Consensus 136 ~~~~~l 141 (201)
+.+..+
T Consensus 99 ~~fgkl 104 (125)
T COG1844 99 RLFGKL 104 (125)
T ss_pred HHhccc
Confidence 555444
No 54
>TIGR02531 yecD_yerC TrpR-related protein YerC/YecD. This model represents a protein subfamily found mostly in the Firmicutes (Bacillus and allies). This family is similar in sequence to the trp operon repressor TrpR described by TIGR01321, and represents a distinct clade within the broader family described by pfam01371. At least one species, Xylella fastidiosa, in the Proteobacteria, has a member of both this family and TIGR01321. Several genomes with a member of this family do not synthesize tryptophan, and members of this family should not be considered trp operon repressors without new evidence.
Probab=35.70 E-value=1.7e+02 Score=22.00 Aligned_cols=44 Identities=14% Similarity=0.077 Sum_probs=31.1
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHhcCCcHHHHHHHhCCCC
Q psy11150 155 RDVVMSKLHEYNDIKDATQIVIGTLANLQQVTVRKLHEDFGLDK 198 (201)
Q Consensus 155 ~~~~i~lLh~YNeiKD~~q~l~g~iA~~~gvt~~~v~~e~gl~~ 198 (201)
.....+.|=.++|+...+++.--.-.-..|.|.++|-+.+|++.
T Consensus 21 ~~~~~~~l~t~~e~~~Ls~R~~I~~ll~~G~S~~eIA~~LgISr 64 (88)
T TIGR02531 21 CYRFFDDIATINEIQSLAQRLQVAKMLKQGKTYSDIEAETGAST 64 (88)
T ss_pred HHHHHHHhCCHHHHHhhhHHHHHHHHHHCCCCHHHHHHHHCcCH
Confidence 34577888888888877777222223356889999999998863
No 55
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=34.82 E-value=42 Score=24.64 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=14.8
Q ss_pred CCCCeEEEEecCCChhHHHHHH
Q psy11150 117 GKPLHSLIISDESKIKDLLEKE 138 (201)
Q Consensus 117 G~PlHslIIpg~lH~qeL~~~~ 138 (201)
..|-|++|||.+ |..++.+..
T Consensus 34 ~~~~h~lIiPk~-h~~~~~~l~ 54 (104)
T cd01278 34 KARHHYLVIPKE-HIASLKALT 54 (104)
T ss_pred CCCceEEEEecC-CCCChHHCC
Confidence 467899999976 655555443
No 56
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.
Probab=34.72 E-value=48 Score=23.93 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=15.0
Q ss_pred CCCeEEEEecCCChhHHHHHHHH
Q psy11150 118 KPLHSLIISDESKIKDLLEKEKL 140 (201)
Q Consensus 118 ~PlHslIIpg~lH~qeL~~~~~~ 140 (201)
-|-|++|+|- -|..++.+..++
T Consensus 33 ~pg~~lI~Pk-~H~~~~~~l~~~ 54 (103)
T cd01277 33 SKGHTLVIPK-KHYENLLDLDPE 54 (103)
T ss_pred CCeeEEEEec-cccCChhhCCHH
Confidence 5779999995 666666554433
No 57
>PF08721 Tn7_Tnp_TnsA_C: TnsA endonuclease C terminal; InterPro: IPR014832 The Tn7 transposase is composed of proteins TnsA and TnsB. DNA breakage at the 5'-end of the transposon is carried out by TnsA, and breakage and joining at the 3'-end is carried out by TnsB. The C-terminal domain of TnsA binds DNA. ; PDB: 1F1Z_B 1T0F_B.
Probab=34.65 E-value=1.1e+02 Score=20.95 Aligned_cols=41 Identities=24% Similarity=0.363 Sum_probs=29.5
Q ss_pred HHHHHHHHhhhhhhhhhHHHH------HHHHHHHhcCCcHHHHHHHh
Q psy11150 154 IRDVVMSKLHEYNDIKDATQI------VIGTLANLQQVTVRKLHEDF 194 (201)
Q Consensus 154 ~~~~~i~lLh~YNeiKD~~q~------l~g~iA~~~gvt~~~v~~e~ 194 (201)
+..++|+-||.|-...+.... +++.+.+..+.|++++-+++
T Consensus 5 ~~~~Ni~wL~~~~~~~~~~~~~~~~~~i~~~l~~~~~~tl~~l~~~~ 51 (79)
T PF08721_consen 5 ILLKNIEWLHPYRRIDDEPEDDDAEELILARLRKNPTMTLRDLCKEL 51 (79)
T ss_dssp HHHHHHHHHTSS------HHHHCTHHHHHHHHHHTTTSBHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCccccchhHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456799999999888866655 78889999999999998876
No 58
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=34.46 E-value=91 Score=21.36 Aligned_cols=29 Identities=28% Similarity=0.341 Sum_probs=19.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHhH-HHHHHHH
Q psy11150 130 KIKDLLEKEKLIDEELAHLEQA-VEIRDVV 158 (201)
Q Consensus 130 H~qeL~~~~~~l~~e~~~l~~~-~~~~~~~ 158 (201)
|+..+-++-..++++++.|++. ...+++|
T Consensus 13 ~~d~IEqkiedid~qIaeLe~KR~~Lv~qH 42 (46)
T PF08946_consen 13 HYDNIEQKIEDIDEQIAELEAKRQRLVDQH 42 (46)
T ss_dssp --THHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHhHHHhHHHHHHHHHHHHHHHHHHHHhC
Confidence 5666677788888888888875 4555555
No 59
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
Probab=32.68 E-value=59 Score=23.71 Aligned_cols=19 Identities=32% Similarity=0.620 Sum_probs=14.0
Q ss_pred CCCeEEEEecCCChhHHHHH
Q psy11150 118 KPLHSLIISDESKIKDLLEK 137 (201)
Q Consensus 118 ~PlHslIIpg~lH~qeL~~~ 137 (201)
.|-|++|||-+ |..++.+.
T Consensus 33 ~~gh~lIiPk~-H~~~~~dl 51 (104)
T cd01276 33 APVHILVIPKK-HIASLSDA 51 (104)
T ss_pred CCCEEEEEecc-eeCChHHc
Confidence 57799999965 76666553
No 60
>PF00816 Histone_HNS: H-NS histone family Partial NMR structure.; InterPro: IPR001801 The histone-like nucleoid-structuring (H-NS) protein belongs to a family of bacterial proteins that play a role in the formation of nucleoid structure and affect gene expression under certain conditions [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2LEV_A 1HNS_A 1LR1_B 1HNR_A 1NI8_A 1OV9_A 2JR1_A 3NR7_A 2L93_A 2L92_A.
Probab=32.35 E-value=1.3e+02 Score=22.02 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHhH
Q psy11150 132 KDLLEKEKLIDEELAHLEQA 151 (201)
Q Consensus 132 qeL~~~~~~l~~e~~~l~~~ 151 (201)
++|.+...+|+++++.....
T Consensus 1 ~eL~~~~~~l~~~~~~~~~~ 20 (93)
T PF00816_consen 1 KELEAQIKELEKEIEERRKQ 20 (93)
T ss_dssp -HHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHH
Confidence 46777788888877776654
No 61
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=32.21 E-value=2.2e+02 Score=21.49 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=20.0
Q ss_pred HHHHHHHHHhhhhhh-----------hhhHHHHHHHHH
Q psy11150 153 EIRDVVMSKLHEYND-----------IKDATQIVIGTL 179 (201)
Q Consensus 153 ~~~~~~i~lLh~YNe-----------iKD~~q~l~g~i 179 (201)
..+++.=.++.+||= +||++|.+|+.+
T Consensus 42 ~~LA~~Qa~l~eyn~~RNaQSn~iKa~KD~~~aIIqN~ 79 (80)
T PRK15326 42 ALLAAYQSKLSEYNLYRNAQSNTVKVFKDIDAAIIQNF 79 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445667788889984 678888888753
No 62
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=30.45 E-value=1.1e+02 Score=22.21 Aligned_cols=40 Identities=15% Similarity=0.300 Sum_probs=28.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q psy11150 129 SKIKDLLEKEKLIDEELAHLEQAVEIRDVVMSKLHEYNDIKDATQIVIGT 178 (201)
Q Consensus 129 lH~qeL~~~~~~l~~e~~~l~~~~~~~~~~i~lLh~YNeiKD~~q~l~g~ 178 (201)
+++.+|-+.-.-|+.|+++|+.+-. +=-.-|+++..|+++
T Consensus 25 lsV~El~eRIalLq~EIeRlkAe~~----------kK~~srsAAeaLFrr 64 (65)
T COG5509 25 LSVAELEERIALLQAEIERLKAELA----------KKKASRSAAEALFRR 64 (65)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH----------hhhccHHHHHHHHhc
Confidence 7888888888999999999886411 112446677777664
No 63
>KOG4552|consensus
Probab=30.24 E-value=2e+02 Score=25.95 Aligned_cols=50 Identities=28% Similarity=0.447 Sum_probs=38.6
Q ss_pred CCChhHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q psy11150 128 ESKIKDLLE---KEKLIDEELAHLEQAVEIRDVVMSKLHEYNDIKDATQIVIGTL 179 (201)
Q Consensus 128 ~lH~qeL~~---~~~~l~~e~~~l~~~~~~~~~~i~lLh~YNeiKD~~q~l~g~i 179 (201)
.=.|++|.+ .+.+..++...|+...+..++-|+.|.+ .+|++-++|--.+
T Consensus 56 d~ef~~llkla~eq~k~e~~m~~Lea~VEkrD~~IQqLqk--~LK~aE~iLtta~ 108 (272)
T KOG4552|consen 56 DDEFKTLLKLAPEQQKREQLMRTLEAHVEKRDEVIQQLQK--NLKSAEVILTTAC 108 (272)
T ss_pred cHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHHHH
Confidence 356777776 5667778888888888888889998887 6899888876544
No 64
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=29.80 E-value=89 Score=19.82 Aligned_cols=29 Identities=17% Similarity=0.456 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHhcCCcHHHHHHHhCCCC
Q psy11150 170 DATQIVIGTLANLQQVTVRKLHEDFGLDK 198 (201)
Q Consensus 170 D~~q~l~g~iA~~~gvt~~~v~~e~gl~~ 198 (201)
+.-..++..|.+..++|++++-++.|++.
T Consensus 3 ~~~~~Il~~l~~~~~~t~~ela~~~~is~ 31 (48)
T PF13412_consen 3 ETQRKILNYLRENPRITQKELAEKLGISR 31 (48)
T ss_dssp HHHHHHHHHHHHCTTS-HHHHHHHHTS-H
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHhCCCH
Confidence 34456778888888899999999888763
No 65
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=29.63 E-value=1.4e+02 Score=26.72 Aligned_cols=63 Identities=14% Similarity=0.266 Sum_probs=46.6
Q ss_pred CCCCCeEEEEecCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhc
Q psy11150 116 MGKPLHSLIISDESKIKDLLEKEKLIDEELAHLEQAVEIRDVVMSKLHEYNDIKDATQIVIGTLANLQ 183 (201)
Q Consensus 116 fG~PlHslIIpg~lH~qeL~~~~~~l~~e~~~l~~~~~~~~~~i~lLh~YNeiKD~~q~l~g~iA~~~ 183 (201)
.|+=+|-=+ .++..+..|++...+||...-.. ...++..++.++||++.+.-+.|=.+||+.+
T Consensus 145 lG~~m~~e~-~~d~dvevLL~~ae~L~~vYP~~----ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~ 207 (259)
T PF08657_consen 145 LGGVMHEEI-VEDVDVEVLLRGAEKLCNVYPLP----GAREKIAALRQRYNQLSNSIAYLEAEVAEQE 207 (259)
T ss_pred ccCcccccc-cccCCHHHHHHHHHHHHHhCCCh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445444 66778888888888888776543 3334566889999999999999999999865
No 66
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=29.58 E-value=70 Score=20.75 Aligned_cols=24 Identities=21% Similarity=0.506 Sum_probs=12.9
Q ss_pred HHHHHHHHhcC-CcHHHHHHHhCCC
Q psy11150 174 IVIGTLANLQQ-VTVRKLHEDFGLD 197 (201)
Q Consensus 174 ~l~g~iA~~~g-vt~~~v~~e~gl~ 197 (201)
.++..+.+..+ +|..++-+++|++
T Consensus 4 ~il~~L~~~~~~it~~eLa~~l~vS 28 (55)
T PF08279_consen 4 QILKLLLESKEPITAKELAEELGVS 28 (55)
T ss_dssp HHHHHHHHTTTSBEHHHHHHHCTS-
T ss_pred HHHHHHHHcCCCcCHHHHHHHhCCC
Confidence 34455533333 6666666666664
No 67
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=29.52 E-value=41 Score=23.32 Aligned_cols=20 Identities=20% Similarity=0.419 Sum_probs=14.6
Q ss_pred CCCeEEEEecCCChhHHHHHH
Q psy11150 118 KPLHSLIISDESKIKDLLEKE 138 (201)
Q Consensus 118 ~PlHslIIpg~lH~qeL~~~~ 138 (201)
.|-|++||| +-|..++.+..
T Consensus 17 ~~gh~lIip-k~H~~~~~~l~ 36 (86)
T cd00468 17 APGHVLVCP-KRHVETLPDLD 36 (86)
T ss_pred CCCcEEEeC-chhhCChhHCC
Confidence 577999999 66776665543
No 68
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=29.42 E-value=1.4e+02 Score=22.81 Aligned_cols=13 Identities=31% Similarity=0.715 Sum_probs=8.8
Q ss_pred HHHHhhhhhhhhh
Q psy11150 158 VMSKLHEYNDIKD 170 (201)
Q Consensus 158 ~i~lLh~YNeiKD 170 (201)
-|+.||+=|++||
T Consensus 74 V~d~L~q~gdlRd 86 (87)
T PF10883_consen 74 VIDQLQQHGDLRD 86 (87)
T ss_pred HHHHHHHcCCCCC
Confidence 3566777777776
No 69
>COG4496 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.30 E-value=1.9e+02 Score=22.68 Aligned_cols=58 Identities=17% Similarity=0.158 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhcCCcHHHHHHHhCCCC
Q psy11150 140 LIDEELAHLEQAVEIRDVVMSKLHEYNDIKDATQIVIGTLANLQQVTVRKLHEDFGLDK 198 (201)
Q Consensus 140 ~l~~e~~~l~~~~~~~~~~i~lLh~YNeiKD~~q~l~g~iA~~~gvt~~~v~~e~gl~~ 198 (201)
+|..-+..|+..++ .=.+.+.|-.-|||+-.+|++==.---.+|-|-.+|..|-|.+.
T Consensus 13 ~l~dailtL~n~ee-cy~FfdDlcTinEiqslaqRlqVa~mL~eg~tY~~I~~eTGaSt 70 (100)
T COG4496 13 ELFDAILTLENLEE-CYAFFDDLCTINEIQSLAQRLQVAKMLKEGRTYRDIEDETGAST 70 (100)
T ss_pred HHHHHHHHhccHHH-HHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCcchhhhccCcch
Confidence 34444445554433 33588899999999999999854444468999999999988765
No 70
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=29.09 E-value=1.6e+02 Score=26.33 Aligned_cols=126 Identities=17% Similarity=0.224 Sum_probs=70.8
Q ss_pred eeEeeecccCCcchhHhhhccccCCCCCCCCHHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCceEEeecccchhcCC
Q psy11150 36 TLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATSLSDMTETN 115 (201)
Q Consensus 36 TL~LLDIk~~e~~~e~~~~g~~~y~p~r~Mt~~eA~~~Lle~e~~~~~~~~dt~~v~~aR~G~~dq~I~~g~l~el~~~d 115 (201)
-|+|||| ||+=..+++.|=++-... +..|-++|-.|. -..|+++...
T Consensus 48 DLILLDi---------------------YmPd~~Gi~lL~~ir~~~--~~~DVI~iTAA~--------d~~tI~~alr-- 94 (224)
T COG4565 48 DLILLDI---------------------YMPDGNGIELLPELRSQH--YPVDVIVITAAS--------DMETIKEALR-- 94 (224)
T ss_pred CEEEEee---------------------ccCCCccHHHHHHHHhcC--CCCCEEEEeccc--------hHHHHHHHHh--
Confidence 7999998 677788999888875543 233434443332 1335555554
Q ss_pred CCCCCeEEEEecCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh-hhhhh----------hhh-HHHHHHHHHH-Hh
Q psy11150 116 MGKPLHSLIISDESKIKDLLEKEKLIDEELAHLEQAVEIRDVVMSKL-HEYND----------IKD-ATQIVIGTLA-NL 182 (201)
Q Consensus 116 fG~PlHslIIpg~lH~qeL~~~~~~l~~e~~~l~~~~~~~~~~i~lL-h~YNe----------iKD-~~q~l~g~iA-~~ 182 (201)
++-.+-||=| .+|+-|.+.-.+-.+....|++..+.-+.+|+.| +.++. |.. +=|.++..+. ..
T Consensus 95 -~Gv~DYLiKP--f~~eRl~~aL~~y~~~r~~l~~~~~~sQ~~lD~l~~~~~k~~~~~~LPkGi~~~Tl~~i~~~~~~~~ 171 (224)
T COG4565 95 -YGVVDYLIKP--FTFERLQQALTRYRQKRHALESHQQLSQKELDQLFNIQSKEQPPDDLPKGLDELTLQKVREALKEPD 171 (224)
T ss_pred -cCchhheecc--eeHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHhccccccCcccCCCCcCHHHHHHHHHHHhCcC
Confidence 3444566655 6777777665555556666666555555666543 32321 111 1233444444 23
Q ss_pred cCCcHHHHHHHhCCC
Q psy11150 183 QQVTVRKLHEDFGLD 197 (201)
Q Consensus 183 ~gvt~~~v~~e~gl~ 197 (201)
.+.|..++-+..|++
T Consensus 172 ~~~Taeela~~~giS 186 (224)
T COG4565 172 QELTAEELAQALGIS 186 (224)
T ss_pred CccCHHHHHHHhCcc
Confidence 566777777666654
No 71
>PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [].
Probab=28.81 E-value=75 Score=24.07 Aligned_cols=40 Identities=20% Similarity=0.304 Sum_probs=29.3
Q ss_pred cCCCCceEEeecccchhcCCCCCCCeEEEEec--CCChhHHH
Q psy11150 96 VGSETQHIVATSLSDMTETNMGKPLHSLIISD--ESKIKDLL 135 (201)
Q Consensus 96 ~G~~dq~I~~g~l~el~~~dfG~PlHslIIpg--~lH~qeL~ 135 (201)
-|+.-..+.+..-+|++..--..-.-|||||| +-+|..+.
T Consensus 8 ~~~~v~~~~F~PfEDvLgvGh~~G~sSiiVPGsGe~NfDs~e 49 (80)
T PF08149_consen 8 PGSPVESLRFCPFEDVLGVGHSKGFSSIIVPGSGEPNFDSLE 49 (80)
T ss_pred CCCeeeeeEEechHHeeEeeccCceeEEeccCCCCCCCCccc
Confidence 34555667788888887766666788999999 57776654
No 72
>PRK10687 purine nucleoside phosphoramidase; Provisional
Probab=28.72 E-value=73 Score=24.86 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=21.2
Q ss_pred CCCeEEEEecCCChhHHHHHHHHHHHHHHHHH
Q psy11150 118 KPLHSLIISDESKIKDLLEKEKLIDEELAHLE 149 (201)
Q Consensus 118 ~PlHslIIpg~lH~qeL~~~~~~l~~e~~~l~ 149 (201)
.|-|+||||- -|...+.+.......++.++-
T Consensus 36 ~~GH~LViPK-~H~~~l~dl~~~~~~~l~~l~ 66 (119)
T PRK10687 36 APTHILIIPN-ILIPTVNDVSAEHEQALGRMI 66 (119)
T ss_pred CCccEEEEeh-hHhCChhHCChHHHHHHHHHH
Confidence 6789999995 577777666555555555544
No 73
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=28.44 E-value=4.1e+02 Score=23.33 Aligned_cols=72 Identities=18% Similarity=0.310 Sum_probs=39.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhH---HHHHHHH-H-HHhhhh----hhhhhHHHHHHHHH----HH--hcCCcHHHHHH
Q psy11150 128 ESKIKDLLEKEKLIDEELAHLEQA---VEIRDVV-M-SKLHEY----NDIKDATQIVIGTL----AN--LQQVTVRKLHE 192 (201)
Q Consensus 128 ~lH~qeL~~~~~~l~~e~~~l~~~---~~~~~~~-i-~lLh~Y----NeiKD~~q~l~g~i----A~--~~gvt~~~v~~ 192 (201)
++.-++|.+...+|..++...+.. ...++.+ + ..|.+. .+.+-++|..+..+ ++ -...|+.++++
T Consensus 130 ~~~~~el~~ek~kL~~q~~e~~e~lr~L~~~k~~r~Kn~~~~Lq~lI~Kwr~~~q~~l~eL~~~~~~~e~~~~TM~eL~~ 209 (221)
T PF10376_consen 130 ELKQQELEEEKRKLEKQVDEKEEELRRLKLVKQYRSKNDLEQLQSLIKKWRSASQEALYELQSEMSEEEGEKFTMGELIK 209 (221)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCccHHHHHH
Confidence 456677777777777666664442 1111111 0 001111 23344555554443 33 46789999999
Q ss_pred HhCCCCC
Q psy11150 193 DFGLDKP 199 (201)
Q Consensus 193 e~gl~~~ 199 (201)
.||++..
T Consensus 210 ~l~ID~~ 216 (221)
T PF10376_consen 210 RLGIDYD 216 (221)
T ss_pred HhCCCcc
Confidence 9999853
No 74
>KOG4239|consensus
Probab=28.03 E-value=5.1e+02 Score=24.52 Aligned_cols=57 Identities=25% Similarity=0.272 Sum_probs=37.2
Q ss_pred CceeEeeccCCCcccCchHHHHHHHhhCCC-e-----eeEeeec-ccCCcchhHhhhccccCCCCCCCCHHHHHHHHHH
Q psy11150 5 GETVSIPFWTESWKPDSFYDKIVENKSRGL-H-----TLCLLDI-QVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVE 76 (201)
Q Consensus 5 G~tvSIpf~~~~~~P~S~yd~I~~N~~~gL-H-----TL~LLDI-k~~e~~~e~~~~g~~~y~p~r~Mt~~eA~~~Lle 76 (201)
-+.||+| .+.+|.|.||++..|+..+. | |=++|=- .++.- .=+.-||+.|-+++||.
T Consensus 172 ~rp~sv~---~g~~p~~~~d~~~~~r~singhfynh~TSfflPa~svk~v------------rInStttt~eVI~~LLk 235 (348)
T KOG4239|consen 172 VRPVSVP---RGKKPPSVYDARIRHRFSINGHFYNHRTSFFLPADSVKNV------------RINSTTTTREVIKLLLK 235 (348)
T ss_pred ccceecc---CCCCCCcHHHHHHhhcccccceeeccceeeecccccceeE------------EecccccHHHHHHHHHH
Confidence 3567887 58899999999988776554 3 2233321 11110 01346999999999997
No 75
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=27.18 E-value=2.5e+02 Score=20.37 Aligned_cols=47 Identities=15% Similarity=0.254 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHhhhhhhhhhHHHHHHH
Q psy11150 131 IKDLLEKEKLIDEELAHLEQA-VEIRDVVMSKLHEYNDIKDATQIVIG 177 (201)
Q Consensus 131 ~qeL~~~~~~l~~e~~~l~~~-~~~~~~~i~lLh~YNeiKD~~q~l~g 177 (201)
..+|.+..+++.+.+..++.. ..+.++--+++|+-|++.+-.+.-..
T Consensus 21 l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~ 68 (90)
T PF06103_consen 21 LKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLE 68 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666664 44444555666777766655444443
No 76
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=26.85 E-value=2e+02 Score=22.17 Aligned_cols=50 Identities=22% Similarity=0.364 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHH-HHHHHHHhhhhhhhh----------hHHHHHHHHHHHhcC
Q psy11150 134 LLEKEKLIDEELAHLEQAVEI-RDVVMSKLHEYNDIK----------DATQIVIGTLANLQQ 184 (201)
Q Consensus 134 L~~~~~~l~~e~~~l~~~~~~-~~~~i~lLh~YNeiK----------D~~q~l~g~iA~~~g 184 (201)
..+.+.+|+.++..+....+- ..-. +.+.+||.+| .-|.-|=++++.++.
T Consensus 34 v~~~f~~L~~~l~~l~~~s~ey~~i~-~I~~eY~k~Kk~~p~y~~~K~Rc~yL~~KL~HIK~ 94 (101)
T PF07303_consen 34 VSRRFQELDSELKRLPPGSQEYKRIA-QILQEYNKKKKRDPNYQEKKKRCEYLHNKLSHIKQ 94 (101)
T ss_dssp HHHHHHHHHHHHHHS-TTSHHHHHHH----HHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHH-HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666555542111 1112 5667777774 456777777777653
No 77
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=26.84 E-value=4.4e+02 Score=25.17 Aligned_cols=103 Identities=16% Similarity=0.192 Sum_probs=59.9
Q ss_pred eeccCCCc----ccCchHHHHHHHhhCCCeeeEeeecccCCcchhHhhhcccc--------CCCCCCCCHHHHHHHHHHH
Q psy11150 10 IPFWTESW----KPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQ--------YLPPRFMSVSQAAQQLVEI 77 (201)
Q Consensus 10 Ipf~~~~~----~P~S~yd~I~~N~~~gLHTL~LLDIk~~e~~~e~~~~g~~~--------y~p~r~Mt~~eA~~~Lle~ 77 (201)
.|+|.++- .-.+.|++|..|+.+ +.++.-++-.+.+||.- -.-+.|||..++=+.+-++
T Consensus 282 yp~p~Eg~lP~yl~~~~YEsir~n~~R---------V~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~i 352 (414)
T COG5379 282 YPYPGEGALPAYLDEGVYESIRQNLRR---------VAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEI 352 (414)
T ss_pred CCCCCCCCCChhhchhhHHHHHhhhhh---------eeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHH
Confidence 47776763 346899999999988 22233333344444332 1235689999998888887
Q ss_pred hhcCCCCCCCceEEEEeecCCCCceEEeecccchhcCCCCCCCeEEEEecCCChhHHHHHHHHHHHHHHHHH
Q psy11150 78 TKTKPGLSTADLAVGIARVGSETQHIVATSLSDMTETNMGKPLHSLIISDESKIKDLLEKEKLIDEELAHLE 149 (201)
Q Consensus 78 e~~~~~~~~dt~~v~~aR~G~~dq~I~~g~l~el~~~dfG~PlHslIIpg~lH~qeL~~~~~~l~~e~~~l~ 149 (201)
...- +.-+. |..-+..+ ..++||++..+ +.+...-++++..+|.
T Consensus 353 srta-----~~gA~-----------VifRtaae-----------~s~~~gR~s~~-irdqw~ylae~s~el~ 396 (414)
T COG5379 353 SRTA-----EAGAR-----------VIFRTAAE-----------VSRLPGRLSTQ-IRDQWAYLAEESTELW 396 (414)
T ss_pred hhcc-----CCCcE-----------EEEecccc-----------eecCCCCCcHH-HHHHHHHHHHHhhhhh
Confidence 5421 11122 22333322 45678888865 5555555555555554
No 78
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=26.61 E-value=1.2e+02 Score=21.59 Aligned_cols=36 Identities=11% Similarity=0.164 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHH
Q psy11150 138 EKLIDEELAHLEQAVEIRDVVMSKLHEYNDIKDATQ 173 (201)
Q Consensus 138 ~~~l~~e~~~l~~~~~~~~~~i~lLh~YNeiKD~~q 173 (201)
..+++++++.+++..+-.+.-+..|....-|...|.
T Consensus 33 ~~~~~~~~~~l~~en~~L~~ei~~l~~~~rIe~~Ar 68 (85)
T TIGR02209 33 LQKLQLEIDKLQKEWRDLQLEVAELSRHERIEKIAK 68 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 333444444444333333333444444444443333
No 79
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=25.75 E-value=84 Score=21.26 Aligned_cols=26 Identities=31% Similarity=0.594 Sum_probs=21.1
Q ss_pred HHHHHHHHHhcCCcHHHHHHHhCCCC
Q psy11150 173 QIVIGTLANLQQVTVRKLHEDFGLDK 198 (201)
Q Consensus 173 q~l~g~iA~~~gvt~~~v~~e~gl~~ 198 (201)
+.++..|-+..-++++++-++||++.
T Consensus 3 ~~Il~~l~~~~~~s~~ela~~~~VS~ 28 (57)
T PF08220_consen 3 QQILELLKEKGKVSVKELAEEFGVSE 28 (57)
T ss_pred HHHHHHHHHcCCEEHHHHHHHHCcCH
Confidence 45677788888889999999998875
No 80
>PRK03002 prsA peptidylprolyl isomerase; Reviewed
Probab=25.52 E-value=1.7e+02 Score=25.99 Aligned_cols=53 Identities=23% Similarity=0.312 Sum_probs=34.0
Q ss_pred CeEEEEecCCChhHHHHHHHHHHHHHHHHHhH-HHHHHHHH-HHhhhhh-hhhhHH
Q psy11150 120 LHSLIISDESKIKDLLEKEKLIDEELAHLEQA-VEIRDVVM-SKLHEYN-DIKDAT 172 (201)
Q Consensus 120 lHslIIpg~lH~qeL~~~~~~l~~e~~~l~~~-~~~~~~~i-~lLh~YN-eiKD~~ 172 (201)
.|.+-+..+-......+..++|.+.+.+.... .......| +++.++| +|+|..
T Consensus 217 ~hIikv~~~~~~~~~e~vk~~I~~~L~~~~~~~~~~~~~~~~~~~~~a~v~i~d~~ 272 (285)
T PRK03002 217 YHIIKLTDKKDLKPYDEVKDSIRKNLEEERTADPIFGKKLLQSELKKANIKINDSE 272 (285)
T ss_pred EEEEEEeecCCCCCHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHCCceeccHH
Confidence 78898888655555667777777777665433 23334445 6777777 666654
No 81
>PRK05990 precorrin-2 C(20)-methyltransferase; Reviewed
Probab=25.30 E-value=1.1e+02 Score=26.37 Aligned_cols=35 Identities=29% Similarity=0.420 Sum_probs=23.2
Q ss_pred EEEEeecCCCCceEEeecccchhcCCCCCCCeEEEEecC
Q psy11150 90 AVGIARVGSETQHIVATSLSDMTETNMGKPLHSLIISDE 128 (201)
Q Consensus 90 ~v~~aR~G~~dq~I~~g~l~el~~~dfG~PlHslIIpg~ 128 (201)
++.+.|+|+++|++.. +.++... ..|.-|+||..+
T Consensus 202 ~~~v~~~~~~~E~i~~--~~~~~~~--~~~Y~s~iiv~~ 236 (241)
T PRK05990 202 ALYVERATMANQRIVP--LAEVDPM--ASPYFSLILVPG 236 (241)
T ss_pred EEEEEECCCCCeEEEE--ccccCCC--CCCceEEEEEec
Confidence 4555999999999873 4454433 356677777643
No 82
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=25.24 E-value=1.3e+02 Score=23.31 Aligned_cols=36 Identities=8% Similarity=-0.036 Sum_probs=25.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q psy11150 129 SKIKDLLEKEKLIDEELAHLEQAVEIRDVVMSKLHE 164 (201)
Q Consensus 129 lH~qeL~~~~~~l~~e~~~l~~~~~~~~~~i~lLh~ 164 (201)
....++.+...++.++++.+++.++-.++-|+.|+.
T Consensus 27 ~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 27 LDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 456677777777777777777777777777776654
No 83
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=25.11 E-value=1.1e+02 Score=21.52 Aligned_cols=28 Identities=32% Similarity=0.402 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHh-cCCcHHHHHHHhCCCC
Q psy11150 171 ATQIVIGTLANL-QQVTVRKLHEDFGLDK 198 (201)
Q Consensus 171 ~~q~l~g~iA~~-~gvt~~~v~~e~gl~~ 198 (201)
-+..++..+++. .++|+.+|-+++|++.
T Consensus 6 r~~~Il~~l~~~~~~~t~~~ia~~l~i~~ 34 (91)
T smart00346 6 RGLAVLRALAEEPGGLTLAELAERLGLSK 34 (91)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHhCCCH
Confidence 456677778877 6788889888888764
No 84
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=24.87 E-value=53 Score=20.07 Aligned_cols=11 Identities=36% Similarity=0.712 Sum_probs=9.2
Q ss_pred CCCHHHHHHHH
Q psy11150 64 FMSVSQAAQQL 74 (201)
Q Consensus 64 ~Mt~~eA~~~L 74 (201)
|||+.||++.|
T Consensus 1 ~lt~~e~a~~l 11 (49)
T TIGR01764 1 YLTVEEAAEYL 11 (49)
T ss_pred CCCHHHHHHHH
Confidence 78999999765
No 85
>PF14138 COX16: Cytochrome c oxidase assembly protein COX16
Probab=24.81 E-value=20 Score=26.61 Aligned_cols=65 Identities=12% Similarity=0.186 Sum_probs=37.6
Q ss_pred CCCCCeEEEEecCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHH-HHHhcCCcHHHHHHHh
Q psy11150 116 MGKPLHSLIISDESKIKDLLEKEKLIDEELAHLEQAVEIRDVVMSKLHEYNDIKDATQIVIGT-LANLQQVTVRKLHEDF 194 (201)
Q Consensus 116 fG~PlHslIIpg~lH~qeL~~~~~~l~~e~~~l~~~~~~~~~~i~lLh~YNeiKD~~q~l~g~-iA~~~gvt~~~v~~e~ 194 (201)
||-|.-++||-|..-.+++.+..-+............+. ++. ....+.+++++-|+++
T Consensus 3 ~GlPf~~liV~GS~gL~~ftq~Rye~~d~k~~~~~~~e~---------------------~~~~~~~~~~v~leeEy~rl 61 (80)
T PF14138_consen 3 FGLPFLLLIVGGSFGLSEFTQIRYERRDRKVQQDEEEEA---------------------LKLLMKNRRKVDLEEEYYRL 61 (80)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhHHhhcccchhHHHH---------------------HhccccccCCCCHHHHHHHH
Confidence 788988888888766565555444333333322211111 111 4677888888888874
Q ss_pred -CCCCCCC
Q psy11150 195 -GLDKPSY 201 (201)
Q Consensus 195 -gl~~~~~ 201 (201)
+.+.+||
T Consensus 62 ~~~d~ddw 69 (80)
T PF14138_consen 62 QQKDIDDW 69 (80)
T ss_pred Hhcccccc
Confidence 3444443
No 86
>COG2096 cob(I)alamin adenosyltransferase [Coenzyme transport and metabolism]
Probab=24.80 E-value=2.9e+02 Score=23.89 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=19.2
Q ss_pred CCCeEEEEecCCChhHHHHHHHHHHHHHHH
Q psy11150 118 KPLHSLIISDESKIKDLLEKEKLIDEELAH 147 (201)
Q Consensus 118 ~PlHslIIpg~lH~qeL~~~~~~l~~e~~~ 147 (201)
+|++++|+||.---...+-.-+.++..-++
T Consensus 105 ~~l~~FiLPGgs~~aA~lh~ARtv~RRAER 134 (184)
T COG2096 105 PPLKSFVLPGGSPAAAALHVARTVARRAER 134 (184)
T ss_pred CCcceeeccCCCHHHHHHHHHHHHHHHHHH
Confidence 789999999965544444444555544433
No 87
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=24.49 E-value=1.6e+02 Score=23.06 Aligned_cols=49 Identities=14% Similarity=0.210 Sum_probs=33.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhh-hhhhhHHHHHHH
Q psy11150 129 SKIKDLLEKEKLIDEELAHLEQAVEIRDVVMSKLHEY-NDIKDATQIVIG 177 (201)
Q Consensus 129 lH~qeL~~~~~~l~~e~~~l~~~~~~~~~~i~lLh~Y-NeiKD~~q~l~g 177 (201)
..+..+.+...+..+|.+.|.+.....+.+|++|+.= +=|...|..-.|
T Consensus 50 ~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg~~~i~e~AR~~l~ 99 (117)
T COG2919 50 ADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDGRDYIEERARSELG 99 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhC
Confidence 4455666677788888888888888888899988764 333333433333
No 88
>PF07374 DUF1492: Protein of unknown function (DUF1492); InterPro: IPR010861 This entry is represented by Streptococcus phage 7201, Orf19. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several hypothetical, highly conserved Streptococcal and related phage proteins. The function of this family is unknown.
Probab=24.32 E-value=3.1e+02 Score=20.54 Aligned_cols=61 Identities=13% Similarity=0.317 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhcCCcHHHHHHHhCCCC
Q psy11150 132 KDLLEKEKLIDEELAHLEQAVEIRDVVMSKLHEYNDIKDATQIVIGTLANLQQVTVRKLHEDFGLDK 198 (201)
Q Consensus 132 qeL~~~~~~l~~e~~~l~~~~~~~~~~i~lLh~YNeiKD~~q~l~g~iA~~~gvt~~~v~~e~gl~~ 198 (201)
.++....+.+.+++.++.... .+....=|.+.|.-++.+=...=..+.+..+|.+++|++.
T Consensus 25 v~~i~~~e~I~~~i~~li~~k------~ei~~~I~~l~d~~~r~iL~~~Yi~~~~~~~I~~~l~~S~ 85 (100)
T PF07374_consen 25 VKIIDLKEEIEREIDELIKEK------LEIRRAINKLEDPDERLILRMRYINKLTWEQIAEELNISR 85 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHccChhHHHHHHHHHHcCCCHHHHHHHHCCCH
Confidence 345555666666666655432 2222333456666666554555557788888888888764
No 89
>smart00338 BRLZ basic region leucin zipper.
Probab=24.16 E-value=2.3e+02 Score=19.34 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q psy11150 131 IKDLLEKEKLIDEELAHLEQAVEIRDVVMSKLHE 164 (201)
Q Consensus 131 ~qeL~~~~~~l~~e~~~l~~~~~~~~~~i~lLh~ 164 (201)
.++|......|..+...|....+-+...+..|..
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555544444444444433
No 90
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=23.63 E-value=40 Score=25.04 Aligned_cols=33 Identities=12% Similarity=0.300 Sum_probs=20.6
Q ss_pred hhhhHHHHHHHHHHH----hcCCcHHHHHHHhCCCCC
Q psy11150 167 DIKDATQIVIGTLAN----LQQVTVRKLHEDFGLDKP 199 (201)
Q Consensus 167 eiKD~~q~l~g~iA~----~~gvt~~~v~~e~gl~~~ 199 (201)
-++...+.++..|.+ .+||.+.+|-+++|++.+
T Consensus 44 ~~~~~~~~Vl~~i~~~~~~~~Gv~v~~I~~~l~~~~~ 80 (102)
T PF08784_consen 44 GLSPLQDKVLNFIKQQPNSEEGVHVDEIAQQLGMSEN 80 (102)
T ss_dssp -S-HHHHHHHHHHHC----TTTEEHHHHHHHSTS-HH
T ss_pred CCCHHHHHHHHHHHhcCCCCCcccHHHHHHHhCcCHH
Confidence 355555555555555 778888888888877643
No 91
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=23.06 E-value=1.2e+02 Score=18.57 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=15.3
Q ss_pred HHHHHHHhcCCcHHHHHHHhCCCC
Q psy11150 175 VIGTLANLQQVTVRKLHEDFGLDK 198 (201)
Q Consensus 175 l~g~iA~~~gvt~~~v~~e~gl~~ 198 (201)
++..+.+..++++.++-+.+|++.
T Consensus 5 il~~l~~~~~~s~~~l~~~l~~s~ 28 (53)
T smart00420 5 ILELLAQQGKVSVEELAELLGVSE 28 (53)
T ss_pred HHHHHHHcCCcCHHHHHHHHCCCH
Confidence 344444556677788877777753
No 92
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=22.74 E-value=1.2e+02 Score=21.89 Aligned_cols=31 Identities=26% Similarity=0.225 Sum_probs=25.1
Q ss_pred hhhhhhhhHHHHHHHHHHHhcCCcHHHHHHH
Q psy11150 163 HEYNDIKDATQIVIGTLANLQQVTVRKLHED 193 (201)
Q Consensus 163 h~YNeiKD~~q~l~g~iA~~~gvt~~~v~~e 193 (201)
-++|-+-+.+=.++..+|+.-|+|..++.+-
T Consensus 34 ee~n~~~e~~p~~~~~lAk~~G~t~~~l~~~ 64 (75)
T TIGR02675 34 EEINSLLEALPGALQALAKAMGVTRGELRKM 64 (75)
T ss_pred HHHHHHHHHhHHHHHHHHHHhCCCHHHHHHH
Confidence 3556666777789999999999999988764
No 93
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=22.16 E-value=1.1e+02 Score=20.50 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHhCCCC
Q psy11150 172 TQIVIGTLANLQQVTVRKLHEDFGLDK 198 (201)
Q Consensus 172 ~q~l~g~iA~~~gvt~~~v~~e~gl~~ 198 (201)
-..++..++...+.|+.+|-+++|++.
T Consensus 12 R~~Il~~L~~~~~~t~~ela~~l~~~~ 38 (61)
T PF12840_consen 12 RLRILRLLASNGPMTVSELAEELGISQ 38 (61)
T ss_dssp HHHHHHHHHHCSTBEHHHHHHHHTS-H
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHCCCH
Confidence 356677778889999999999998863
No 94
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=22.14 E-value=94 Score=20.55 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=12.8
Q ss_pred HHHHHhcCCcHHHHHHHhCCC
Q psy11150 177 GTLANLQQVTVRKLHEDFGLD 197 (201)
Q Consensus 177 g~iA~~~gvt~~~v~~e~gl~ 197 (201)
..+...+|.|.+++.++.|++
T Consensus 3 ~~~m~~~~it~~~La~~~gis 23 (63)
T PF13443_consen 3 KELMAERGITQKDLARKTGIS 23 (63)
T ss_dssp HHHHHHTT--HHHHHHHHT--
T ss_pred HHHHHHcCCCHHHHHHHHCcC
Confidence 456677888888888888775
No 95
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=21.68 E-value=2.2e+02 Score=21.45 Aligned_cols=20 Identities=30% Similarity=0.320 Sum_probs=8.4
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q psy11150 142 DEELAHLEQAVEIRDVVMSK 161 (201)
Q Consensus 142 ~~e~~~l~~~~~~~~~~i~l 161 (201)
+..++.|++....++.+++.
T Consensus 72 e~~V~~LE~~v~~LD~ysk~ 91 (99)
T PF10046_consen 72 EEQVTELEQTVYELDEYSKE 91 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 96
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B.
Probab=21.54 E-value=97 Score=23.85 Aligned_cols=19 Identities=32% Similarity=0.707 Sum_probs=14.3
Q ss_pred CCCeEEEEecCCChhHHHH
Q psy11150 118 KPLHSLIISDESKIKDLLE 136 (201)
Q Consensus 118 ~PlHslIIpg~lH~qeL~~ 136 (201)
+|.|.||||-+-|..++..
T Consensus 33 a~~H~LviPk~~~i~sl~~ 51 (116)
T PF11969_consen 33 APVHLLVIPKDPHIRSLRD 51 (116)
T ss_dssp CCEEEEEEESSSS-SSGGG
T ss_pred cCcEEEEEeecCCCCChHH
Confidence 8999999998867665543
No 97
>PF12728 HTH_17: Helix-turn-helix domain
Probab=21.51 E-value=67 Score=20.64 Aligned_cols=11 Identities=36% Similarity=0.712 Sum_probs=9.0
Q ss_pred CCCHHHHHHHH
Q psy11150 64 FMSVSQAAQQL 74 (201)
Q Consensus 64 ~Mt~~eA~~~L 74 (201)
|||+.||++.|
T Consensus 1 ~lt~~e~a~~l 11 (51)
T PF12728_consen 1 YLTVKEAAELL 11 (51)
T ss_pred CCCHHHHHHHH
Confidence 68999999755
No 98
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=21.48 E-value=3.7e+02 Score=20.37 Aligned_cols=49 Identities=18% Similarity=0.298 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q psy11150 131 IKDLLEKEKLIDEELAHLEQA-VEIRDVVMSKLHEYNDIKDATQIVIGTL 179 (201)
Q Consensus 131 ~qeL~~~~~~l~~e~~~l~~~-~~~~~~~i~lLh~YNeiKD~~q~l~g~i 179 (201)
..+|.++-..|.+|...+... .+.+.++-++=.+-|.-.+--..|+|++
T Consensus 27 ieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 27 IEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444444443321 2333334444444445555556666665
No 99
>KOG2752|consensus
Probab=21.30 E-value=1.9e+02 Score=27.29 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=26.4
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHhcCCc
Q psy11150 157 VVMSKLHEYNDIKDATQIVIGTLANLQQVT 186 (201)
Q Consensus 157 ~~i~lLh~YNeiKD~~q~l~g~iA~~~gvt 186 (201)
.|+.+.-+||.+||---..+++.|...-|=
T Consensus 303 q~ve~i~eyn~lK~~L~d~L~~fA~~~~vv 332 (345)
T KOG2752|consen 303 QQVELICEYNRLKDELKDYLKRFADEGTVV 332 (345)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHhhhcCeEe
Confidence 599999999999999999999999875543
No 100
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=21.28 E-value=4.4e+02 Score=24.00 Aligned_cols=10 Identities=30% Similarity=0.674 Sum_probs=6.5
Q ss_pred HHhhhhhhhh
Q psy11150 160 SKLHEYNDIK 169 (201)
Q Consensus 160 ~lLh~YNeiK 169 (201)
+..++||..+
T Consensus 96 ~~~~~~n~~~ 105 (314)
T PF04111_consen 96 EYWREYNELQ 105 (314)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5566777665
No 101
>PF08653 DASH_Dam1: DASH complex subunit Dam1; InterPro: IPR013962 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=21.15 E-value=2.8e+02 Score=19.68 Aligned_cols=34 Identities=12% Similarity=0.275 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhh
Q psy11150 135 LEKEKLIDEELAHLEQAVEIRDVVMSKLHEYNDI 168 (201)
Q Consensus 135 ~~~~~~l~~e~~~l~~~~~~~~~~i~lLh~YNei 168 (201)
.....+|+.++..|..-.+-++.-=+-|..+||-
T Consensus 4 ~~~f~eL~D~~~~L~~n~~~L~~ihesL~~FNES 37 (58)
T PF08653_consen 4 EPQFAELSDSMETLDKNMEQLNQIHESLSDFNES 37 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777666544444333556667763
No 102
>PF01923 Cob_adeno_trans: Cobalamin adenosyltransferase; InterPro: IPR002779 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents EutT- and PduO-type ATP:cob(I)alamin adenosyltransferases. PduO functions to convert cobalamin to AdoCbl for 1,2-propanediol degradation [], while EutT produces AdoCbl for ethanolamine utilisation []. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 2ZHY_A 2ZHZ_B 3KE5_C 3KE4_B 2AH6_C 1NOG_A 2IDX_C 3GAH_A 3CI1_A 3CI3_A ....
Probab=20.89 E-value=2.5e+02 Score=22.89 Aligned_cols=55 Identities=13% Similarity=0.186 Sum_probs=28.6
Q ss_pred CCCCeEEEEecCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q psy11150 117 GKPLHSLIISDESKIKDLLEKEKLIDEELAHLEQAVEIRDVVMSKLHEYNDIKDATQIVIGTLAN 181 (201)
Q Consensus 117 G~PlHslIIpg~lH~qeL~~~~~~l~~e~~~l~~~~~~~~~~i~lLh~YNeiKD~~q~l~g~iA~ 181 (201)
.+|++.+|+||.--..-.+..-+..+.+.++ +-+++.++++ +.......+.++.+
T Consensus 99 ~~~~~~Filpgg~~~~a~Lh~aRtv~RraER---------~~v~l~~~~~-v~~~il~ylNRLSd 153 (163)
T PF01923_consen 99 LPPLKGFILPGGSPAAAALHVARTVCRRAER---------RAVRLFREEE-VRPDILRYLNRLSD 153 (163)
T ss_dssp S-SESSCEES-SSHHHHHHHHHHHHHHHHHH---------HHHHHHHHSS-S-HHHHHHHHHHHH
T ss_pred CCCCceeEeCCCCHHHHHHHHHHHHHHHHHH---------HHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 5799999999973333333344455554444 3344555555 45555555555544
No 103
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=20.76 E-value=4.5e+02 Score=24.30 Aligned_cols=74 Identities=16% Similarity=0.082 Sum_probs=41.8
Q ss_pred CCCeEEEEecCCChh-HHHHHHHHHHHHHHHHHhH--HH-HHHHHHHHhhhhhhhhhHHHHHHHHHHHhcC-CcHHHHH
Q psy11150 118 KPLHSLIISDESKIK-DLLEKEKLIDEELAHLEQA--VE-IRDVVMSKLHEYNDIKDATQIVIGTLANLQQ-VTVRKLH 191 (201)
Q Consensus 118 ~PlHslIIpg~lH~q-eL~~~~~~l~~e~~~l~~~--~~-~~~~~i~lLh~YNeiKD~~q~l~g~iA~~~g-vt~~~v~ 191 (201)
.|.|.|-+|-...-. .+.=..+++..-++.|++. .+ .-+.--+-+..||+.+..-+.+...-+..-. +|-.|++
T Consensus 120 ~~~~~ldlP~~~~~~~~~~Y~~~el~~l~~~LE~~~G~~it~e~L~~aI~~~N~~R~~~~~l~~l~~~~p~pitg~e~~ 198 (380)
T TIGR02263 120 KGARYFDLPHNFDDDLGGEFYTAELNELCEGLEHLSGKKITDDAIRASIAVFNDNRKLIQALYGLRADEPWKVPSADLY 198 (380)
T ss_pred CcEEEEeCCCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHH
Confidence 359999999753322 2444555555555555552 11 1223335567788888888777766544433 4444433
No 104
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=20.37 E-value=2.9e+02 Score=25.22 Aligned_cols=37 Identities=14% Similarity=0.106 Sum_probs=19.2
Q ss_pred hhhhhhhHHHHHHHHHHHhcCCcHHHHHH-HhCCCCCC
Q psy11150 164 EYNDIKDATQIVIGTLANLQQVTVRKLHE-DFGLDKPS 200 (201)
Q Consensus 164 ~YNeiKD~~q~l~g~iA~~~gvt~~~v~~-e~gl~~~~ 200 (201)
+|-++|+--..|.-.+--..-..+.++.+ .+|+..+|
T Consensus 192 ev~~L~~r~~ELe~~~El~e~~~i~dl~~et~~l~p~d 229 (290)
T COG4026 192 EVYDLKKRWDELEPGVELPEEELISDLVKETLNLAPKD 229 (290)
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHhccCchh
Confidence 55555555554444433333344555555 56666555
No 105
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=20.28 E-value=1.3e+02 Score=21.02 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhcC--CcHHHHHHHhCCCC
Q psy11150 172 TQIVIGTLANLQQ--VTVRKLHEDFGLDK 198 (201)
Q Consensus 172 ~q~l~g~iA~~~g--vt~~~v~~e~gl~~ 198 (201)
-+.++..+++..+ +|.++|-+++|++.
T Consensus 8 ~~~IL~~L~~~g~~~~ta~eLa~~lgl~~ 36 (68)
T smart00550 8 EEKILEFLENSGDETSTALQLAKNLGLPK 36 (68)
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCCCH
Confidence 3556666666655 77777777777764
Done!