Query psy11150
Match_columns 201
No_of_seqs 188 out of 372
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 19:18:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11150.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11150hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i4t_A Diphthine synthase; nia 100.0 4E-29 1.4E-33 220.2 12.8 133 1-133 145-280 (292)
2 3viq_B Mating-type switching p 99.9 1.2E-23 4E-28 157.3 9.1 70 131-200 10-85 (85)
3 2z6r_A Diphthine synthase; met 99.7 1.4E-17 4.9E-22 141.8 11.6 118 1-133 127-246 (265)
4 1wde_A Probable diphthine synt 99.7 2.1E-17 7.2E-22 143.8 8.7 116 1-132 134-256 (294)
5 1vhv_A Diphthine synthase; str 99.5 5.4E-13 1.9E-17 114.2 13.3 105 2-132 139-244 (268)
6 1va0_A Uroporphyrin-III C-meth 98.0 1.3E-05 4.3E-10 66.8 6.7 78 26-131 145-224 (239)
7 2ybo_A Methyltransferase; SUMT 97.9 2.3E-05 7.9E-10 68.0 7.5 99 2-127 154-256 (294)
8 1ve2_A Uroporphyrin-III C-meth 97.8 6.7E-05 2.3E-09 62.3 7.7 92 2-130 130-223 (235)
9 1pjq_A CYSG, siroheme synthase 97.7 8.9E-05 3E-09 67.9 8.7 99 2-128 345-443 (457)
10 1s4d_A Uroporphyrin-III C-meth 97.7 0.00019 6.4E-09 61.7 9.8 76 28-130 171-250 (280)
11 2zvb_A Precorrin-3 C17-methylt 97.6 0.00048 1.6E-08 60.2 10.9 82 23-127 161-245 (295)
12 1cbf_A Cobalt-precorrin-4 tran 97.6 0.00023 8E-09 61.0 8.7 75 28-128 171-247 (285)
13 1wyz_A Putative S-adenosylmeth 97.2 0.00072 2.5E-08 56.8 7.0 56 66-127 177-234 (242)
14 2e0n_A Precorrin-2 C20-methylt 96.9 0.0037 1.3E-07 52.5 9.1 72 24-128 164-235 (259)
15 2qbu_A Precorrin-2 methyltrans 95.9 0.043 1.5E-06 44.8 9.2 69 25-128 161-229 (232)
16 3kwp_A Predicted methyltransfe 95.7 0.025 8.7E-07 49.3 7.5 128 25-194 158-290 (296)
17 3nut_A Precorrin-3 methylase; 95.4 0.035 1.2E-06 46.5 6.9 46 84-130 191-236 (251)
18 2bb3_A Cobalamin biosynthesis 95.2 0.025 8.4E-07 46.8 5.2 38 88-128 179-216 (221)
19 3ndc_A Precorrin-4 C(11)-methy 94.5 0.12 4.2E-06 43.8 7.9 59 66-131 172-233 (264)
20 4e16_A Precorrin-4 C(11)-methy 94.1 0.28 9.5E-06 41.1 9.3 60 66-131 172-235 (253)
21 3ffy_A Putative tetrapyrrole ( 86.0 0.38 1.3E-05 36.2 2.3 47 64-113 49-95 (115)
22 2npn_A Putative cobalamin synt 70.5 2.7 9.1E-05 34.8 3.0 27 86-112 198-224 (251)
23 3frw_A Putative Trp repressor 70.0 16 0.00053 27.9 6.9 59 139-198 14-72 (107)
24 3kor_A Possible Trp repressor; 64.6 20 0.00068 27.7 6.6 60 137-198 29-89 (119)
25 1zhc_A Hypothetical protein HP 51.9 9.2 0.00031 27.0 2.5 53 128-181 16-69 (76)
26 1qgp_A Protein (double strande 48.9 22 0.00076 24.5 4.1 37 161-197 5-44 (77)
27 3nd1_A Precorrin-6A synthase/C 48.5 10 0.00035 32.4 2.8 28 86-113 219-246 (275)
28 2aby_A Hypothetical protein TA 43.1 6.5 0.00022 31.1 0.6 52 128-196 84-135 (146)
29 1xaw_A Occludin; coiled-coil, 41.3 33 0.0011 27.2 4.5 27 158-184 92-130 (140)
30 2aze_B Transcription factor E2 35.3 38 0.0013 25.3 3.8 29 136-164 6-34 (106)
31 3shw_A Tight junction protein 32.4 1.9E+02 0.0065 26.6 8.8 22 21-44 269-290 (468)
32 2heo_A Z-DNA binding protein 1 31.8 47 0.0016 22.0 3.5 30 168-197 8-38 (67)
33 1woz_A 177AA long conserved hy 31.1 1.7E+02 0.0058 23.5 7.4 30 118-147 97-126 (177)
34 4aj5_1 SKA3, spindle and kinet 30.5 1.4E+02 0.0049 22.4 6.3 49 131-179 8-65 (101)
35 1xn7_A Hypothetical protein YH 29.6 45 0.0015 23.3 3.2 26 173-198 5-30 (78)
36 2jui_A PLNE; ampiphilic alpha 29.2 10 0.00034 23.0 -0.3 7 2-8 6-12 (33)
37 1wlq_A Geminin; coiled-coil; 2 29.2 1.3E+02 0.0046 21.8 5.7 20 165-184 64-83 (83)
38 1sfx_A Conserved hypothetical 28.5 1.3E+02 0.0043 20.0 5.4 30 168-197 18-47 (109)
39 3sj5_A Methyl-accepting chemot 28.0 36 0.0012 27.3 2.8 26 170-195 46-71 (188)
40 1oyi_A Double-stranded RNA-bin 27.8 32 0.0011 24.7 2.2 39 158-197 3-43 (82)
41 2kii_A Putative uncharacterize 27.0 39 0.0013 26.8 2.8 26 170-195 45-70 (181)
42 2xv5_A Lamin-A/C; structural p 26.5 1.7E+02 0.0057 20.5 7.1 50 134-183 3-53 (74)
43 2qlz_A Transcription factor PF 25.7 2.5E+02 0.0086 23.1 7.7 68 129-197 116-191 (232)
44 2an7_A Protein PARD; bacterial 25.6 55 0.0019 23.9 3.1 26 170-195 10-35 (83)
45 2k02_A Ferrous iron transport 25.6 50 0.0017 23.8 2.9 26 173-198 5-30 (87)
46 3i4s_A Histidine triad protein 25.6 31 0.0011 26.8 1.9 23 117-139 35-57 (149)
47 3tfg_A ALR2278 protein; heme-b 24.9 45 0.0015 26.6 2.8 26 170-195 46-71 (189)
48 3k2t_A LMO2511 protein; lister 24.7 41 0.0014 22.6 2.1 16 62-77 10-25 (57)
49 3q8t_A Beclin-1; autophagy, AT 24.1 1.6E+02 0.0054 21.4 5.5 38 132-169 14-66 (96)
50 4fqn_A Malcavernin; helical do 23.8 1.3E+02 0.0044 22.6 4.9 33 152-184 31-66 (98)
51 3viq_A SWI5-dependent recombin 23.2 2.5E+02 0.0086 21.4 9.3 26 132-157 3-28 (122)
52 3ka5_A Ribosome-associated pro 22.6 46 0.0016 23.0 2.1 16 62-77 10-25 (65)
53 1sfu_A 34L protein; protein/Z- 21.6 30 0.001 24.7 1.0 32 165-197 8-42 (75)
54 1fit_A FragIle histidine prote 21.3 39 0.0013 25.4 1.7 18 118-136 32-49 (147)
55 3lyv_A Ribosome-associated fac 21.1 50 0.0017 22.9 2.0 16 62-77 11-26 (66)
56 1deb_A APC protein, adenomatou 20.8 2E+02 0.0067 19.3 6.3 48 130-177 4-52 (54)
57 3n1s_A HIT-like protein HINT; 20.8 31 0.0011 25.3 1.0 19 117-136 35-53 (119)
No 1
>3i4t_A Diphthine synthase; niaid, ssgcid, infectious disease, anaerobic parasitic protozoan, structural genomics, decode, UW, SBRI; 2.49A {Entamoeba histolytica}
Probab=99.96 E-value=4e-29 Score=220.25 Aligned_cols=133 Identities=40% Similarity=0.735 Sum_probs=113.6
Q ss_pred CCcCCceeEeeccCCCcccCchHHHHHHHhhCCCeeeEeeecccCCcchhHhhhccccCCCCCCCCHHHHHHHHHHHhhc
Q psy11150 1 LYNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKT 80 (201)
Q Consensus 1 ~YrFG~tvSIpf~~~~~~P~S~yd~I~~N~~~gLHTL~LLDIk~~e~~~e~~~~g~~~y~p~r~Mt~~eA~~~Lle~e~~ 80 (201)
+++||.++|++|++.+|+|.++++.+..|+.++.|||||+|++++|+|++||+||+++|+|||||+++.++++|+++++.
T Consensus 145 l~~~~~~~sv~~~t~~~~p~~~~~~~~~~l~~~~~Tlvl~d~~~~e~~~~~~~~~~~~y~p~r~m~~~~~~~~L~~~~~~ 224 (292)
T 3i4t_A 145 LYRFGQTVSVCFWSEHWRPSSYYPKIKINRDNNMHTLVLLDIKVKERSEESIIKGRDIFEPPRYMTINQCIEQLLEVEKE 224 (292)
T ss_dssp GGGBCCCEEECCCBTTBCCCTHHHHHHHHHHTTCBEEEEECEECCC-------------CCCEECCHHHHHHHHHHHHHH
T ss_pred cccCCceeEEEEEeCCCCCCccHHHHHHHhhcCCCeEEEEeccccccchhhccccccccCCccccCHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred C--CCCCCCceEEEEeecCCCCceEEeecccchhcCCCCCCCeEEEEecC-CChhH
Q psy11150 81 K--PGLSTADLAVGIARVGSETQHIVATSLSDMTETNMGKPLHSLIISDE-SKIKD 133 (201)
Q Consensus 81 ~--~~~~~dt~~v~~aR~G~~dq~I~~g~l~el~~~dfG~PlHslIIpg~-lH~qe 133 (201)
. +.+++++.+++++|+|+++|+|..+|+++|.+.+||.|+|++||+|+ ||+.|
T Consensus 225 l~~~g~~~dtpv~vv~~~t~~~E~i~~~tL~~l~~~~~~~~~~~liivG~~l~~~e 280 (292)
T 3i4t_A 225 QHLGVYDEDTMVVGMARVACADQKIVYGKMKDLLHYDFGAPMHCLLIPAPQVDDPE 280 (292)
T ss_dssp HCCCSCCTTCEEEEEESTTSTTCEEEEEEHHHHTTCCCCSSCEEEEECCSSCCHHH
T ss_pred HHhcCCCCCCEEEEEeecCCCceEEEEEEHHHHHhhhcCCCCCEEEEECCcCCHHH
Confidence 2 57888999999999999999999999999999999999999999996 99874
No 2
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=99.90 E-value=1.2e-23 Score=157.30 Aligned_cols=70 Identities=23% Similarity=0.386 Sum_probs=65.1
Q ss_pred hhHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhcCCcHHHHHHHhCCCCCC
Q psy11150 131 IKDLLEKEKLIDEELAHLEQ------AVEIRDVVMSKLHEYNDIKDATQIVIGTLANLQQVTVRKLHEDFGLDKPS 200 (201)
Q Consensus 131 ~qeL~~~~~~l~~e~~~l~~------~~~~~~~~i~lLh~YNeiKD~~q~l~g~iA~~~gvt~~~v~~e~gl~~~~ 200 (201)
.++|.+..++|+++++++.. |++++++||++||+||||||+||+|+|+||+.||||+++||++||++++|
T Consensus 10 i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA~~rgv~~~~v~~e~g~~~~D 85 (85)
T 3viq_B 10 VHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNEIRDIALGMIGKVAEHEKCTSVELFDRFGVNGSE 85 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGHHHHTCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcHHHHHHHhCCCCCC
Confidence 46788888899999988874 68999999999999999999999999999999999999999999999987
No 3
>2z6r_A Diphthine synthase; methyltransferase, S-adenosyl-L-methionine, transferase; HET: SAH MES; 1.50A {Pyrococcus horikoshii} PDB: 2dek_A* 1wng_A* 1vce_A* 2ed3_A* 2e4r_A* 2owg_A* 2ek3_A* 2pcm_A* 2p5c_A* 2hut_A* 2emr_A* 2el3_A* 2el0_A* 2ejk_A* 2eld_A* 2el2_A* 2eka_A* 2eh5_A* 2pcg_A* 2el1_A* ...
Probab=99.73 E-value=1.4e-17 Score=141.85 Aligned_cols=118 Identities=33% Similarity=0.609 Sum_probs=107.2
Q ss_pred CCcCCceeEeeccCCCcccCchHHHHHHHhhCCCeeeEeeecccCCcchhHhhhccccCCCCCCCCHHHHHHHHHHHhhc
Q psy11150 1 LYNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKT 80 (201)
Q Consensus 1 ~YrFG~tvSIpf~~~~~~P~S~yd~I~~N~~~gLHTL~LLDIk~~e~~~e~~~~g~~~y~p~r~Mt~~eA~~~Lle~e~~ 80 (201)
+++||.++|++|++.+|+|.+.++.+..++..+.||+||||||++| ||||+++++.++|.++.+.
T Consensus 127 l~~~~~~~~v~~~s~~~~~~~~~~~l~~~~~~~~~tlvl~d~~~~~---------------~~y~~~~~~~~~l~~~~~~ 191 (265)
T 2z6r_A 127 IYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEK---------------RMYMTANEAMELLLKVEDM 191 (265)
T ss_dssp GGGBCCCEEECCCBTTBCCCHHHHHHHHHHHTTCBEEEEECEEGGG---------------TEECCHHHHHHHHHHHHHH
T ss_pred ccCCCccEEEEEecCCcCCCchHHHHHHHHhCCCceEEEEeccccc---------------ccccCHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999999999876 7999999998888887665
Q ss_pred C--CCCCCCceEEEEeecCCCCceEEeecccchhcCCCCCCCeEEEEecCCChhH
Q psy11150 81 K--PGLSTADLAVGIARVGSETQHIVATSLSDMTETNMGKPLHSLIISDESKIKD 133 (201)
Q Consensus 81 ~--~~~~~dt~~v~~aR~G~~dq~I~~g~l~el~~~dfG~PlHslIIpg~lH~qe 133 (201)
. +.+++++.++++.|+|+++|+|..+++++|.+.+|+.|++++||+|++|..+
T Consensus 192 l~~~~~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~~~~~~~lii~g~~~~~~ 246 (265)
T 2z6r_A 192 KKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVE 246 (265)
T ss_dssp HCCSSSCTTCEEEEEESTTSSSCEEEEEEHHHHTTCCCCSSCEEEEECCSCCHHH
T ss_pred HhhcCCCCCCEEEEEEeCCCCceEEEEeeHHHHhhhhcCCCCcEEEEECCCchHH
Confidence 4 3677899999999999999999999999999889999999999999998753
No 4
>1wde_A Probable diphthine synthase; structural genomics, conserved hypothetical protein, riken S genomics/proteomics initiative, RSGI, transferase; 2.00A {Aeropyrum pernix} SCOP: c.90.1.1
Probab=99.70 E-value=2.1e-17 Score=143.79 Aligned_cols=116 Identities=24% Similarity=0.269 Sum_probs=104.7
Q ss_pred CCcCCceeEeeccCCCcccCchHHHHHHHhhCCCeeeEeeecccCCcchhHhhhccccCCCCCCCCHHHHHHHHHHHhhc
Q psy11150 1 LYNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKT 80 (201)
Q Consensus 1 ~YrFG~tvSIpf~~~~~~P~S~yd~I~~N~~~gLHTL~LLDIk~~e~~~e~~~~g~~~y~p~r~Mt~~eA~~~Lle~e~~ 80 (201)
+++||+++||+|++.+|.|.++++.+..|+..+.||+||++...+ +|||++++++++|+++++.
T Consensus 134 l~~~~~~~~v~~~~~~~~p~~~~~~l~~~l~~~~~tlvl~~~~~~----------------~~~m~~~~i~~~L~~l~~~ 197 (294)
T 1wde_A 134 FYRFGGTVTLPGPWRGVTPISVARRIYLNLCAGLHTTALLDVDER----------------GVQLSPGQGVSLLLEADRE 197 (294)
T ss_dssp GGGEEEEEEECCGGGCCCCHHHHHHHHHHHHHTCEEEEEECBCTT----------------SCBCCHHHHHHHHHHHHHH
T ss_pred ccCCCceEEEEeccCcccCCChHHHHHHHHhcCCCeEEEEecccc----------------cccccHHHHHHHHHHHHHh
Confidence 367899999999999999999999999999999999999998642 5999999999999977654
Q ss_pred ------C-CCCCCCceEEEEeecCCCCceEEeecccchhcCCCCCCCeEEEEecCCChh
Q psy11150 81 ------K-PGLSTADLAVGIARVGSETQHIVATSLSDMTETNMGKPLHSLIISDESKIK 132 (201)
Q Consensus 81 ------~-~~~~~dt~~v~~aR~G~~dq~I~~g~l~el~~~dfG~PlHslIIpg~lH~q 132 (201)
. |.+++++.+++++|+|+++|+|..+++++|.+.+||+|||++||||++|+.
T Consensus 198 l~~~~~~~G~~~~~~~v~v~~~lg~~~E~i~~~tl~el~~~~~~~~~~~iiI~g~~~~~ 256 (294)
T 1wde_A 198 YAREAGAPALLARLPSVLVEAGAGGGHRVLYWSSLERLSTADVEGGVYSIVIPARLSGV 256 (294)
T ss_dssp HHHHHTSCCCGGGSCEEEEECCGGGCCEEEEESCHHHHHTCCCCCCCCEEEECSSCCHH
T ss_pred hhccccccCcCCCCCEEEEEEeCCCCCcEEEEeeHHHHhhcccCCCCEEEEEeCCCchH
Confidence 1 455778999999999999999999999999999999999999999999975
No 5
>1vhv_A Diphthine synthase; structural genomics, transferase; HET: MSE; 1.75A {Archaeoglobus fulgidus} SCOP: c.90.1.1
Probab=99.47 E-value=5.4e-13 Score=114.23 Aligned_cols=105 Identities=27% Similarity=0.488 Sum_probs=94.1
Q ss_pred CcCCceeEeeccCCCcccCchHHHHHHHhhCCCeeeEeeecccCCcchhHhhhccccCCCCCCCCHHHHHHHHHHHhhcC
Q psy11150 2 YNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTK 81 (201)
Q Consensus 2 YrFG~tvSIpf~~~~~~P~S~yd~I~~N~~~gLHTL~LLDIk~~e~~~e~~~~g~~~y~p~r~Mt~~eA~~~Lle~e~~~ 81 (201)
+.||.++||+| |.|.++++.+.+|+..+.||+|++|+++ .||++..+++.|+++.+..
T Consensus 139 ~~~~~~~sv~~----~~~~~~~~~~~~~l~~~~~tlvl~d~~~------------------~~~~~~~~~~~L~~l~~~~ 196 (268)
T 1vhv_A 139 YRFGKSATVSW----HRSQTPVNVIKANRSIDAHTLLFLDLHP------------------EPMTIGHAVENLIAEDAQM 196 (268)
T ss_dssp GGBCCCEEECS----SCCSHHHHHHHHHHHTTCBEEEEECCSS------------------SCCCHHHHHHHHHHHCGGG
T ss_pred ccCcceEEEEe----cCCCchHHHHHHHhccCCCeEEEEcCch------------------hhcCHHHHHHHHHHHHhcC
Confidence 57899999998 6788889999999999999999999964 4899999999999976543
Q ss_pred CCCCCCceEEEEeecCCCCceEEeecccchhcCCCCCCCeEEEEecC-CChh
Q psy11150 82 PGLSTADLAVGIARVGSETQHIVATSLSDMTETNMGKPLHSLIISDE-SKIK 132 (201)
Q Consensus 82 ~~~~~dt~~v~~aR~G~~dq~I~~g~l~el~~~dfG~PlHslIIpg~-lH~q 132 (201)
+ ++.++++.|+|+++|+|..+++++|.+.+|++||+++||+++ +|+.
T Consensus 197 ~----~~~v~v~~~l~~~~E~i~~~tl~el~~~~~~~~~~~liI~~~~~~~~ 244 (268)
T 1vhv_A 197 K----DLYAVGIARAGSGEEVVKCDRLENLKKIDFGKPLHVMVVLAKTLHFM 244 (268)
T ss_dssp G----GSEEEEEESTTSSSCEEEEEEGGGGGGSCCCSSCEEEEECCSSCCHH
T ss_pred C----CcEEEEEEcCCCCceEEEEEEHHHHHHhhcCCCCeEEEEECCcCCHH
Confidence 3 789999999999999999999999999888899999999997 9974
No 6
>1va0_A Uroporphyrin-III C-methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.97A {Thermus thermophilus} SCOP: c.90.1.1 PDB: 1v9a_A
Probab=97.96 E-value=1.3e-05 Score=66.82 Aligned_cols=78 Identities=17% Similarity=0.211 Sum_probs=60.5
Q ss_pred HHHHhhCCCeeeEeeecccCCcchhHhhhccccCCCCCCCCHHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCceEEe
Q psy11150 26 IVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVA 105 (201)
Q Consensus 26 I~~N~~~gLHTL~LLDIk~~e~~~e~~~~g~~~y~p~r~Mt~~eA~~~Lle~e~~~~~~~~dt~~v~~aR~G~~dq~I~~ 105 (201)
..+++..+ ||+||++-. -++.+.++.|++. .+.+++.++++.|+|+++|+|..
T Consensus 145 ~~~~l~~~-~t~vl~~~~---------------------~~~~~i~~~L~~~-----g~~~~~~v~v~~~l~~~~E~i~~ 197 (239)
T 1va0_A 145 DLRPFARV-PTLVVLMGV---------------------GRRVWIAKELLRL-----GRDPREPTLFVERASTPKERRVH 197 (239)
T ss_dssp CCTTTTTC-SSEEEESCS---------------------TTHHHHHHHHHHT-----TCCTTCEEEEEETTTSTTCEEEE
T ss_pred hHHHhcCC-CcEEEEccH---------------------HHHHHHHHHHHhc-----CCCCCCcEEEEEECCCCCcEEEE
Confidence 44667788 999998632 1578888888762 25668899999999999999999
Q ss_pred ecccchhcC--CCCCCCeEEEEecCCCh
Q psy11150 106 TSLSDMTET--NMGKPLHSLIISDESKI 131 (201)
Q Consensus 106 g~l~el~~~--dfG~PlHslIIpg~lH~ 131 (201)
++++++... +| ++++++||+..+..
T Consensus 198 ~~l~el~~~~~~~-~~~~vivig~~~~~ 224 (239)
T 1va0_A 198 ARLEEVAEGKVEV-RPPALWILGEVVRV 224 (239)
T ss_dssp EEHHHHHTTCCCC-CSSEEEEESGGGGG
T ss_pred eEHHHHHhhhcCC-CCCEEEEEchhhcc
Confidence 999999875 56 56788888654543
No 7
>2ybo_A Methyltransferase; SUMT, NIRE, heme D1 biosynthesis; HET: SAH; 2.00A {Pseudomonas aeruginosa} PDB: 2ybq_A*
Probab=97.90 E-value=2.3e-05 Score=68.02 Aligned_cols=99 Identities=20% Similarity=0.222 Sum_probs=68.8
Q ss_pred CcCCceeEeeccCCCcccCchHHHHHHHhhCCCeeeEeeecccCCcchhHhhhccccCCCCCCCCHHHHHHHHHHHhhcC
Q psy11150 2 YNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTK 81 (201)
Q Consensus 2 YrFG~tvSIpf~~~~~~P~S~yd~I~~N~~~gLHTL~LLDIk~~e~~~e~~~~g~~~y~p~r~Mt~~eA~~~Lle~e~~~ 81 (201)
+.+|.+-++.|.+..+++.+..+...+++..+-+|+||++-.- ++.+.++.|++.
T Consensus 154 t~~~~~~~~~~~sg~~~~~~~~~~~~~~l~~~~~tlVl~~~~~---------------------~~~~i~~~L~~~---- 208 (294)
T 2ybo_A 154 THRDLAQSCTFVTGHLQNDGRLDLDWAGLARGKQTLVFYMGLG---------------------NLAEIAARLVEH---- 208 (294)
T ss_dssp CBTTTBSCEEEEECSCCTTSSCCCCHHHHTSSSCEEEEESCGG---------------------GHHHHHHHHHHT----
T ss_pred ccCCCCcEEEEEcccCCcccchhhHHHHHhcCCCeEEEECcHH---------------------HHHHHHHHHHhc----
Confidence 4556545555555555444322223456677889999986531 567778888762
Q ss_pred CCCCCCceEEEEeecCCCCceEEeecccchhcC----CCCCCCeEEEEec
Q psy11150 82 PGLSTADLAVGIARVGSETQHIVATSLSDMTET----NMGKPLHSLIISD 127 (201)
Q Consensus 82 ~~~~~dt~~v~~aR~G~~dq~I~~g~l~el~~~----dfG~PlHslIIpg 127 (201)
.+.+++.++++.|+|+++|+|..++++++.+. ++ ++++++||+.
T Consensus 209 -G~~~~~~v~v~~~l~~~~E~i~~~tl~el~~~~~~~~~-~~~~vivIg~ 256 (294)
T 2ybo_A 209 -GLASDTPAALVSQGTQAGQQVTRGALAELPALARRYQL-KPPTLIVVGQ 256 (294)
T ss_dssp -TCCTTCEEEEEESTTSTTCEEEEEEGGGHHHHHHHTTC-CSSEEEEEST
T ss_pred -CCCCCCEEEEEEeCCCCceEEEEeeHHHHHHHHHhcCC-CCCEEEEECc
Confidence 36678999999999999999999999999763 45 4567777765
No 8
>1ve2_A Uroporphyrin-III C-methyltransferase; heme, biosynthesis, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: c.90.1.1
Probab=97.76 E-value=6.7e-05 Score=62.26 Aligned_cols=92 Identities=18% Similarity=0.164 Sum_probs=59.5
Q ss_pred CcCCceeEeeccCCCcccCchHHHHHHHhhCCCeeeEeeecccCCcchhHhhhccccCCCCCCCCHHHHHHHHHHHhhcC
Q psy11150 2 YNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTK 81 (201)
Q Consensus 2 YrFG~tvSIpf~~~~~~P~S~yd~I~~N~~~gLHTL~LLDIk~~e~~~e~~~~g~~~y~p~r~Mt~~eA~~~Lle~e~~~ 81 (201)
+.+|.+-++.|.+..+ |.+ ++. +-||+|+++-. . .+.+.++.|++
T Consensus 130 ~~~~~~~~~~~~s~~~-~~~-------~l~-~~~t~vl~~~~------------------~---~~~~i~~~L~~----- 174 (235)
T 1ve2_A 130 THRGLARSFAVATGHD-PAL-------PLP-RADTLVLLMPL------------------H---TLGGLKERLLE----- 174 (235)
T ss_dssp CBTTTBSCEEEEESSC-TTS-------CCC-BCSEEEEEC---------------------------CHHHHHHT-----
T ss_pred ccCCcccEEEEeCCCC-chh-------hhc-cCCeEEEEcCh------------------h---hHHHHHHHHHh-----
Confidence 3455433444434444 543 666 77999997521 1 24555555654
Q ss_pred CCCCCCceEEEEeecCCCCceEEeecccchhcC--CCCCCCeEEEEecCCC
Q psy11150 82 PGLSTADLAVGIARVGSETQHIVATSLSDMTET--NMGKPLHSLIISDESK 130 (201)
Q Consensus 82 ~~~~~dt~~v~~aR~G~~dq~I~~g~l~el~~~--dfG~PlHslIIpg~lH 130 (201)
.+.+++.++++.|+|+++|+|..++++++.+. +|+.| +++||...+.
T Consensus 175 -g~~~~~~v~v~~~l~~~~E~i~~~~l~el~~~~~~~~~~-~vivig~~~~ 223 (235)
T 1ve2_A 175 -RFPPETPLALLARVGWPGEAVRLGRVEDLPGLGEGLPSP-ALLVVGKVVG 223 (235)
T ss_dssp -TSCTTSEEEEEESTTSTTCEEEEEEGGGTTTTTTTCCSS-EEEEESGGGG
T ss_pred -cCCCCCeEEEEEECCcCCeEEEEEEHHHHHHHhcCCCCC-EEEEEChHhh
Confidence 35668899999999999999999999999876 77555 6777654343
No 9
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=97.72 E-value=8.9e-05 Score=67.92 Aligned_cols=99 Identities=17% Similarity=0.089 Sum_probs=66.7
Q ss_pred CcCCceeEeeccCCCcccCchHHHHHHHhhCCCeeeEeeecccCCcchhHhhhccccCCCCCCCCHHHHHHHHHHHhhcC
Q psy11150 2 YNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTK 81 (201)
Q Consensus 2 YrFG~tvSIpf~~~~~~P~S~yd~I~~N~~~gLHTL~LLDIk~~e~~~e~~~~g~~~y~p~r~Mt~~eA~~~Lle~e~~~ 81 (201)
+.+|.+.++.|.+..+++. .....+++..+-||+||++-. -.+.+.++.|++.
T Consensus 345 t~~~~~~~~~~vsg~~~~~--~~~~~~~l~~~~~t~Vl~~~~---------------------~~~~~i~~~L~~~---- 397 (457)
T 1pjq_A 345 THRDYAQSVRLVTGHLKTG--GELDWENLAAEKQTLVFYMGL---------------------NQAATIQEKLIAF---- 397 (457)
T ss_dssp CCTTTCSEEEEECC--------CCCHHHHHSSSEEEEESSCS---------------------SSHHHHHHHHHHT----
T ss_pred cCCCccceEEEEeCCCCCc--chhhHHHHhcCCCeEEEEcch---------------------hhHHHHHHHHHhc----
Confidence 4566656676666655543 122346777889999986432 2567777777762
Q ss_pred CCCCCCceEEEEeecCCCCceEEeecccchhcCCCCCCCeEEEEecC
Q psy11150 82 PGLSTADLAVGIARVGSETQHIVATSLSDMTETNMGKPLHSLIISDE 128 (201)
Q Consensus 82 ~~~~~dt~~v~~aR~G~~dq~I~~g~l~el~~~dfG~PlHslIIpg~ 128 (201)
.+.+++.+.++.|+|+++|+|..+++++|.....+.+.+++||.|.
T Consensus 398 -g~~~~~~v~v~~~l~~~~E~i~~~tl~el~~~~~~~~~~~viivg~ 443 (457)
T 1pjq_A 398 -GMQADMPVALVENGTSVKQRVVHGVLTQLGELAQQVESPALIIVGR 443 (457)
T ss_dssp -TCCTTCEEEEEESTTSTTCEEEEEEGGGHHHHTTSCCSSEEEEESG
T ss_pred -CCCCCCEEEEEEECCCCCcEEEEEEHHHHHHHhcCCCCCEEEEECh
Confidence 3667899999999999999999999999987533445556666664
No 10
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis, cobalamin, SAM, SAH, uroporphyrin methyltransferase; HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP: c.90.1.1
Probab=97.70 E-value=0.00019 Score=61.67 Aligned_cols=76 Identities=9% Similarity=0.174 Sum_probs=57.5
Q ss_pred HHhhCCCeeeEeeecccCCcchhHhhhccccCCCCCCCCHHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCceEEeec
Q psy11150 28 ENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATS 107 (201)
Q Consensus 28 ~N~~~gLHTL~LLDIk~~e~~~e~~~~g~~~y~p~r~Mt~~eA~~~Lle~e~~~~~~~~dt~~v~~aR~G~~dq~I~~g~ 107 (201)
+.+..+-+|+||++..- ++.+.++.|++. .+.+++.++++.|+|+++|+|..++
T Consensus 171 ~~l~~~~~tlVl~~~~~---------------------~~~~i~~~L~~~-----G~~~~~~v~v~~~l~~~~E~i~~~t 224 (280)
T 1s4d_A 171 QGIASGSPVIVMYMAMK---------------------HIGAITANLIAG-----GRSPDEPVAFVCNAATPQQAVLETT 224 (280)
T ss_dssp HHHHTTCSEEEEESCST---------------------THHHHHHHHHHT-----TCCTTCEEEEEESTTSTTCEEEEEE
T ss_pred HHHhCCCCeEEEECchh---------------------hHHHHHHHHHhc-----CCCCCCEEEEEEeCCCCCeEEEEec
Confidence 34456789999997642 467788888762 3566899999999999999999999
Q ss_pred ccchhcC----CCCCCCeEEEEecCCC
Q psy11150 108 LSDMTET----NMGKPLHSLIISDESK 130 (201)
Q Consensus 108 l~el~~~----dfG~PlHslIIpg~lH 130 (201)
++++.+. +|+. |+++||+....
T Consensus 225 l~el~~~~~~~~~~~-~~vivig~~~~ 250 (280)
T 1s4d_A 225 LARAEADVAAAGLEP-PAIVVVGEVVR 250 (280)
T ss_dssp TTTHHHHHHHHTCCS-SEEEEESGGGG
T ss_pred HHHHHHHHHhcCCCC-CEEEEECchhc
Confidence 9999865 6755 46666654443
No 11
>2zvb_A Precorrin-3 C17-methyltransferase; plasmid, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SAH; 2.00A {Thermus thermophilus} PDB: 2zvc_A*
Probab=97.59 E-value=0.00048 Score=60.17 Aligned_cols=82 Identities=20% Similarity=0.236 Sum_probs=62.5
Q ss_pred HHHHHH---HhhCCCeeeEeeecccCCcchhHhhhccccCCCCCCCCHHHHHHHHHHHhhcCCCCCCCceEEEEeecCCC
Q psy11150 23 YDKIVE---NKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGSE 99 (201)
Q Consensus 23 yd~I~~---N~~~gLHTL~LLDIk~~e~~~e~~~~g~~~y~p~r~Mt~~eA~~~Lle~e~~~~~~~~dt~~v~~aR~G~~ 99 (201)
++.+.. +...+-+|++|.|-+.+ +|++.+.+++++|++ ...+++.++++.++|++
T Consensus 161 ~~~l~~~l~~~~~~~~t~vl~~~~~~----------------~r~~~~~~i~~~L~~------~~~~~~~v~vv~~l~~~ 218 (295)
T 2zvb_A 161 WPLIERRLHAAGQGDFVVVLYNPQSK----------------RRDWQLRKSAEILLE------YRPKETPAALVKSAYRK 218 (295)
T ss_dssp HHHHHHHHHHHHHTTCEEEEESCCCS----------------SCTTHHHHHHHHHTT------TSCTTCEEEEEESTTST
T ss_pred HHHHHHHHHHhhcCCcEEEEEcCCcc----------------cchhhHHHHHHHHHh------cCCCCCEEEEEecCCCC
Confidence 444444 34456789999886532 468899999999887 24568999999999999
Q ss_pred CceEEeecccchhcCCCCCCCeEEEEec
Q psy11150 100 TQHIVATSLSDMTETNMGKPLHSLIISD 127 (201)
Q Consensus 100 dq~I~~g~l~el~~~dfG~PlHslIIpg 127 (201)
+|+|..+++++|...+++.| ..+||+.
T Consensus 219 ~E~i~~~tL~el~~~~~~~~-svviig~ 245 (295)
T 2zvb_A 219 RQEVALTTLEGLREAEAGML-TTVVIGN 245 (295)
T ss_dssp TCEEEEEETGGGGGCCCCTT-EEEEECC
T ss_pred CcEEEEeeHHHHHhccCCCC-EEEEECC
Confidence 99999999999998877644 5555543
No 12
>1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase, cobalamin biosynth methyltransferase; HET: SAH; 2.40A {Bacillus megaterium} SCOP: c.90.1.1 PDB: 2cbf_A*
Probab=97.58 E-value=0.00023 Score=61.02 Aligned_cols=75 Identities=15% Similarity=0.232 Sum_probs=57.2
Q ss_pred HHhhCCCeeeEeeecccCCcchhHhhhccccCCCCCCCCHHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCceEEeec
Q psy11150 28 ENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATS 107 (201)
Q Consensus 28 ~N~~~gLHTL~LLDIk~~e~~~e~~~~g~~~y~p~r~Mt~~eA~~~Lle~e~~~~~~~~dt~~v~~aR~G~~dq~I~~g~ 107 (201)
.++..+-+|+|+++-. -++.+.++.|++ ..+.+++.++++.|+|+++|+|..++
T Consensus 171 ~~l~~~~~tlvl~~~~---------------------~~~~~i~~~L~~-----~g~~~~~~v~v~~~lg~~~E~i~~~t 224 (285)
T 1cbf_A 171 TDLAKHKCTIALFLSS---------------------TLTKKVMKEFIN-----AGWSEDTPVVVVYKATWPDEKIVRTT 224 (285)
T ss_dssp HHHHTTCSEEEEESCT---------------------TCHHHHHHHHHH-----TTCCTTCEEEEEESTTSTTCEEEEEE
T ss_pred HHHhcCCCeEEEECcH---------------------HHHHHHHHHHHh-----cCCCCCCeEEEEEECCcCCcEEEEec
Confidence 5677788999998521 157788888876 24567899999999999999999999
Q ss_pred ccchhcC--CCCCCCeEEEEecC
Q psy11150 108 LSDMTET--NMGKPLHSLIISDE 128 (201)
Q Consensus 108 l~el~~~--dfG~PlHslIIpg~ 128 (201)
++++.+. +.+-+.+++||.|+
T Consensus 225 l~el~~~~~~~~~~~~~viiig~ 247 (285)
T 1cbf_A 225 VKDLDDAMRTNGIRKQAMILAGW 247 (285)
T ss_dssp GGGHHHHHHHTTCCSSEEEEESG
T ss_pred HHHHHHHHHhcCCCCcEEEEEch
Confidence 9999763 34555667776664
No 13
>1wyz_A Putative S-adenosylmethionine-dependent methyltra; northeast structural genomics consortium, BTR28, methyltrans PSI; 2.50A {Bacteroides thetaiotaomicron} SCOP: c.90.1.1
Probab=97.20 E-value=0.00072 Score=56.75 Aligned_cols=56 Identities=9% Similarity=0.122 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCceEEeecccchhc--CCCCCCCeEEEEec
Q psy11150 66 SVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATSLSDMTE--TNMGKPLHSLIISD 127 (201)
Q Consensus 66 t~~eA~~~Lle~e~~~~~~~~dt~~v~~aR~G~~dq~I~~g~l~el~~--~dfG~PlHslIIpg 127 (201)
...+.++.|++ .+++++.++++.|+|+++|+|..++++++.+ .++.++|+.+||=+
T Consensus 177 ~~~~~~~~l~~------~~~~~~~v~vv~~~t~~~E~i~~~tl~~l~~~~~~~~~~P~i~vig~ 234 (242)
T 1wyz_A 177 RNHKMIEDILQ------NCRPQTKLCIAANITCEGEFIQTRTVKDWKGHIPELSKIPCIFLLYK 234 (242)
T ss_dssp GHHHHHHHHHH------HSCSSSEEEEEESTTSSSCEEEEEEHHHHSSCCC---CCCEEEEEEC
T ss_pred HHHHHHHHHHh------cCCCCCEEEEEEeCCCCCcEEEEeeHHHHHhhhhccCCCCEEEEEec
Confidence 46677777766 2456899999999999999999999999987 45656776666543
No 14
>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S-adenosylmethi transferase; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A*
Probab=96.95 E-value=0.0037 Score=52.49 Aligned_cols=72 Identities=10% Similarity=0.122 Sum_probs=54.0
Q ss_pred HHHHHHhhCCCeeeEeeecccCCcchhHhhhccccCCCCCCCCHHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCceE
Q psy11150 24 DKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHI 103 (201)
Q Consensus 24 d~I~~N~~~gLHTL~LLDIk~~e~~~e~~~~g~~~y~p~r~Mt~~eA~~~Lle~e~~~~~~~~dt~~v~~aR~G~~dq~I 103 (201)
+.+...+.. -+|+|+++-. + ++.+.++.|++. | . + ++++.|+|+++|+|
T Consensus 164 ~~l~~~~~~-~~t~vl~~~~-------------------~--~~~~i~~~L~~~----g-~--~--v~v~~~l~~~~E~i 212 (259)
T 2e0n_A 164 GELERALVT-HSTVVVMKLS-------------------T--VRDELVSFLERY----A-K--P--FLYAEKVGMAGEFI 212 (259)
T ss_dssp HHHHHHHTT-CSEEEECCTT-------------------S--SGGGHHHHHHHH----C-S--C--EEEEESTTSTTCEE
T ss_pred HHHHHHhhc-CCEEEEEccc-------------------c--cHHHHHHHHHhC----C-C--C--EEEEEECCCCCeEE
Confidence 556666654 4899998643 1 467778888764 2 1 2 78889999999999
Q ss_pred EeecccchhcCCCCCCCeEEEEecC
Q psy11150 104 VATSLSDMTETNMGKPLHSLIISDE 128 (201)
Q Consensus 104 ~~g~l~el~~~dfG~PlHslIIpg~ 128 (201)
.. +++++...+| ++++++||+..
T Consensus 213 ~~-~l~el~~~~~-~~~s~iii~~~ 235 (259)
T 2e0n_A 213 TM-EVDALRSRAI-PYFSLLVCSPH 235 (259)
T ss_dssp EC-CTHHHHSCCC-CSSEEEEECGG
T ss_pred Ec-cHHHHhhCCC-CCcEEEEEecc
Confidence 99 9999988887 46788888764
No 15
>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=95.92 E-value=0.043 Score=44.76 Aligned_cols=69 Identities=7% Similarity=0.054 Sum_probs=47.9
Q ss_pred HHHHHhhCCCeeeEeeecccCCcchhHhhhccccCCCCCCCCHHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCceEE
Q psy11150 25 KIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIV 104 (201)
Q Consensus 25 ~I~~N~~~gLHTL~LLDIk~~e~~~e~~~~g~~~y~p~r~Mt~~eA~~~Lle~e~~~~~~~~dt~~v~~aR~G~~dq~I~ 104 (201)
.+...+..+ +|+||++-.- .+.+.++.|++. | .++.++++.|+|+++|+|.
T Consensus 161 ~l~~~~~~~-~t~vl~~~~~---------------------~~~~i~~~L~~~----g---~~~~v~v~~~l~~~~E~i~ 211 (232)
T 2qbu_A 161 RFERVLRDV-DACVIMKTSR---------------------HGRRAMEVVESD----P---RGKDVVSVANCSMDDEVVE 211 (232)
T ss_dssp HHHHHGGGC-SEEEESSHHH---------------------HHHHHHHHHHHS----S---SCCEEEEEESTTSTTCEEE
T ss_pred HHHHHhhcC-CeEEEEcccC---------------------cHHHHHHHHHhc----C---CCCcEEEEEECCCCCcEEE
Confidence 455555554 8999975431 356677777652 2 2467889999999999998
Q ss_pred eecccchhcCCCCCCCeEEEEecC
Q psy11150 105 ATSLSDMTETNMGKPLHSLIISDE 128 (201)
Q Consensus 105 ~g~l~el~~~dfG~PlHslIIpg~ 128 (201)
.+ ++ .+| ++++++||+..
T Consensus 212 ~~-l~----~~~-~~ls~vii~~~ 229 (232)
T 2qbu_A 212 RG-FA----SGG-GYLATTLVRFR 229 (232)
T ss_dssp ES-CC----SCC-CSSEEEEEEC-
T ss_pred cC-CC----cCC-CccEEEEEecC
Confidence 84 65 456 67899998864
No 16
>3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG, STRU genomics, PSI-2, protein structure initiative; 2.29A {Lactobacillus brevis atcc 367}
Probab=95.74 E-value=0.025 Score=49.33 Aligned_cols=128 Identities=13% Similarity=0.165 Sum_probs=53.3
Q ss_pred HHHHHhhCCCeeeEeeecccCCcchhHhhhccccCCCCCCCCHHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCceEE
Q psy11150 25 KIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIV 104 (201)
Q Consensus 25 ~I~~N~~~gLHTL~LLDIk~~e~~~e~~~~g~~~y~p~r~Mt~~eA~~~Lle~e~~~~~~~~dt~~v~~aR~G~~dq~I~ 104 (201)
...+++...-+|+|++.-. + .+.+.++.|++. +.+++.++++.++|.++|+|.
T Consensus 158 ~~l~~l~~~~~tlV~y~~~-------------------~--rl~~~l~~L~~~------~g~~~~v~v~~~lt~~~E~i~ 210 (296)
T 3kwp_A 158 AEIAGLAQRPETLIFYEAP-------------------H--RLKKTLQNLAAG------FGDERPAVLCRELTKRYEEFL 210 (296)
T ss_dssp HHHHTTTTCCSEEEEEECG-------------------G--GHHHHHHHHHHH------HCTTCEEEEEESTTSTTCEEE
T ss_pred HHHHHhhcCCceeEeeeCc-------------------H--HHHHHHHHHHHH------hCCcchhHHHHHHHHHHHHHH
Confidence 3456666777788875321 1 245556666552 345789999999999999999
Q ss_pred eecccchhcC----CCCCCCeEEEEecCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-hhhhhhhhhHHHHHHHHH
Q psy11150 105 ATSLSDMTET----NMGKPLHSLIISDESKIKDLLEKEKLIDEELAHLEQAVEIRDVVMSK-LHEYNDIKDATQIVIGTL 179 (201)
Q Consensus 105 ~g~l~el~~~----dfG~PlHslIIpg~lH~qeL~~~~~~l~~e~~~l~~~~~~~~~~i~l-Lh~YNeiKD~~q~l~g~i 179 (201)
.+++++|.+. .+ .++-+|||.+.-.-.+ .. ...+ +. .....++++. +.+=-..||++ ..+
T Consensus 211 ~gtl~el~~~~~~~~~-~ge~vlvv~~~~~~~~-~~--~~~~-~~------~~~~~~~~~~~~~~~~~~k~a~----~~~ 275 (296)
T 3kwp_A 211 RGSLAELANWAATDTV-RGEFVVLVGGNPAPTT-AA--TTAV-DL------SEPIDVQVDRLIAAGEKPNDAI----KEV 275 (296)
T ss_dssp EEEHHHHHHHHHHSCC-CSCEEEEECCCSSCC------------------------------------------------
T ss_pred hccHHHHHhhhccccc-ceeEEEEEcCCCCCCc-cc--chhc-cc------cccHHHHHHHHHHcCCChhHHH----HHH
Confidence 9999999763 34 3456777765322110 00 0000 00 0001122222 11122456655 457
Q ss_pred HHhcCCcHHHHHHHh
Q psy11150 180 ANLQQVTVRKLHEDF 194 (201)
Q Consensus 180 A~~~gvt~~~v~~e~ 194 (201)
|...|++-+++|+.+
T Consensus 276 a~~~g~~~~~~y~~~ 290 (296)
T 3kwp_A 276 AKLRGAKKQEIYRQY 290 (296)
T ss_dssp ---------------
T ss_pred HHhccchHHHHHHHh
Confidence 889999999999864
No 17
>3nut_A Precorrin-3 methylase; vitamin B12 pathway, cobalamin, methyltransferase, transfera; HET: SAH; 2.22A {Rhodobacter capsulatus}
Probab=95.40 E-value=0.035 Score=46.55 Aligned_cols=46 Identities=15% Similarity=0.147 Sum_probs=36.6
Q ss_pred CCCCceEEEEeecCCCCceEEeecccchhcCCCCCCCeEEEEecCCC
Q psy11150 84 LSTADLAVGIARVGSETQHIVATSLSDMTETNMGKPLHSLIISDESK 130 (201)
Q Consensus 84 ~~~dt~~v~~aR~G~~dq~I~~g~l~el~~~dfG~PlHslIIpg~lH 130 (201)
+.+++.+.++.++|+++|+|..+++++|...+|+.| -.+||.....
T Consensus 191 ~~~~~~v~v~~~l~~~~E~i~~~tl~~l~~~~~~~~-s~iiVg~~~~ 236 (251)
T 3nut_A 191 CEPGRLILFARAVTTPEQAISVVELRDATPEMADMR-TVVLVGNAAT 236 (251)
T ss_dssp SCTTCEEEEEESTTSTTCEEEEEEGGGCCGGGCCTT-EEEEECCSSC
T ss_pred CCCCCEEEEEeeCCCCCcEEEEeEHHHHhhcCCCCC-EEEEECCccc
Confidence 466899999999999999999999999998777544 5555554443
No 18
>2bb3_A Cobalamin biosynthesis precorrin-6Y methylase (CB; beta, alpha-beta-alpha sandwich, structural genomics, PSI, P structure initiative; HET: SAH; 2.27A {Archaeoglobus fulgidus} SCOP: c.90.1.1
Probab=95.15 E-value=0.025 Score=46.77 Aligned_cols=38 Identities=11% Similarity=0.087 Sum_probs=33.9
Q ss_pred ceEEEEeecCCCCceEEeecccchhcCCCCCCCeEEEEecC
Q psy11150 88 DLAVGIARVGSETQHIVATSLSDMTETNMGKPLHSLIISDE 128 (201)
Q Consensus 88 t~~v~~aR~G~~dq~I~~g~l~el~~~dfG~PlHslIIpg~ 128 (201)
+.++++.|+|+++|+|..++++++ .+| .|++|+||..+
T Consensus 179 ~~v~v~~~lg~~~E~i~~~~l~el--~~~-~~~~slii~~~ 216 (221)
T 2bb3_A 179 RRVVLLENLCMEGERIREGNADSI--ELE-SDYTIIFVERE 216 (221)
T ss_dssp CEEEEEESTTSTTCEEEEEETTTC--CCC-CSSEEEEECCC
T ss_pred CeeehhhhcCCCCcEEEEccHHHH--hhc-CCCEEEEEEcC
Confidence 678899999999999999999999 466 68999999865
No 19
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A {Rhodobacter capsulatus} PDB: 3nei_A
Probab=94.48 E-value=0.12 Score=43.79 Aligned_cols=59 Identities=12% Similarity=0.157 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCceEEeecccchhcC---CCCCCCeEEEEecCCCh
Q psy11150 66 SVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATSLSDMTET---NMGKPLHSLIISDESKI 131 (201)
Q Consensus 66 t~~eA~~~Lle~e~~~~~~~~dt~~v~~aR~G~~dq~I~~g~l~el~~~---dfG~PlHslIIpg~lH~ 131 (201)
.+.+.++.|++. ..+++.++++.++|+++|+|..++++++... .+. .+-++||...+..
T Consensus 172 ~~~~i~~~L~~~------~~~~~~v~v~~~l~~~~E~i~~~tl~el~~~~~~~~~-~~~viivg~~~~~ 233 (264)
T 3ndc_A 172 VLDEVVQKLVPH------YGEDCPVAIVWRASWPDQRVVRATLATLQTSLGAELE-RTALILVGRSLAT 233 (264)
T ss_dssp GHHHHHHHHHHH------HCTTCEEEEEESTTSTTCEEEEEEGGGSCGGGSSSSC-CCEEEEESGGGSC
T ss_pred HHHHHHHHHHhh------CCCCCEEEEEEECCCCCeEEEEEEHHHHHHHHhccCC-ccEEEEEcCcCCc
Confidence 467778888773 3558899999999999999999999999863 343 4455555544543
No 20
>4e16_A Precorrin-4 C(11)-methyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.49A {Clostridium difficile}
Probab=94.15 E-value=0.28 Score=41.11 Aligned_cols=60 Identities=17% Similarity=0.199 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCceEEeecccchhc----CCCCCCCeEEEEecCCCh
Q psy11150 66 SVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATSLSDMTE----TNMGKPLHSLIISDESKI 131 (201)
Q Consensus 66 t~~eA~~~Lle~e~~~~~~~~dt~~v~~aR~G~~dq~I~~g~l~el~~----~dfG~PlHslIIpg~lH~ 131 (201)
.+.+.++.|++. .+.+++.+.++.++|.++|+|..+|++++.+ ..+. ++-++||..-+..
T Consensus 172 ~~~~i~~~L~~~-----g~~~~~~v~v~~~l~~~~E~i~~~tl~el~~~~~~~~~~-~~~vivIg~~~~~ 235 (253)
T 4e16_A 172 EIEKVVSKLLEG-----GYPKDTPIAVIYKATWADEKIVKGTLSDIAVKVKENNIN-KTALIMVGRFLGE 235 (253)
T ss_dssp THHHHHHHHHHT-----TCCTTCEEEEEESTTSTTCEEEEEETTTHHHHHHHTCCC-SCEEEEESGGGGC
T ss_pred HHHHHHHHHHhc-----CCCCCCeEEEEEeCCCCCcEEEEEEHHHHHHHHHhCCCC-CCEEEEECccccc
Confidence 577788888772 4566899999999999999999999999986 3454 4456666554443
No 21
>3ffy_A Putative tetrapyrrole (corrin/porphyrin) methylas; structural genomics, APC62130.1, methyltransferase, PSI-2, P structure initiative; 2.00A {Bacteroides fragilis} PDB: 3fq6_A
Probab=86.04 E-value=0.38 Score=36.17 Aligned_cols=47 Identities=13% Similarity=0.164 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCceEEeecccchhc
Q psy11150 64 FMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATSLSDMTE 113 (201)
Q Consensus 64 ~Mt~~eA~~~Lle~e~~~~~~~~dt~~v~~aR~G~~dq~I~~g~l~el~~ 113 (201)
||++.-..+.|-++.+ ++.+|+.++++.++.+++|.+..|+++++.+
T Consensus 49 yesp~Rl~~~l~~L~~---~~g~~~~v~v~relTk~~E~~~rgtl~el~~ 95 (115)
T 3ffy_A 49 YESPHRLLKTLTQFAE---YFGPERQVSVSREISKIHEETVRGTLSELIE 95 (115)
T ss_dssp EECTTTHHHHHHHHHH---HHCTTCEEEEEEESSSSCEEEEEEEHHHHHH
T ss_pred EechHHHHHHHHHHHH---hcCCCCEEEeeeccCCCceEEEEeeHHHHHH
Confidence 4555444443333322 3566899999999999999999999999875
No 22
>2npn_A Putative cobalamin synthesis related protein; COBF, PSI-2, MAD, struc genomics, SAM, S-adenosylmethionine, MCSG; HET: MSE SAM; 1.60A {Corynebacterium diphtheriae}
Probab=70.53 E-value=2.7 Score=34.79 Aligned_cols=27 Identities=15% Similarity=0.049 Sum_probs=24.6
Q ss_pred CCceEEEEeecCCCCceEEeecccchh
Q psy11150 86 TADLAVGIARVGSETQHIVATSLSDMT 112 (201)
Q Consensus 86 ~dt~~v~~aR~G~~dq~I~~g~l~el~ 112 (201)
+++.++++.|+|+++|+|..+++++|.
T Consensus 198 ~~~~v~v~~~l~~~~E~i~~~~l~el~ 224 (251)
T 2npn_A 198 EHTYMWWGAFLGTEQQVLRKGYVHEIG 224 (251)
T ss_dssp TTEEEEEEESTTSTTCEEEEEEHHHHH
T ss_pred CCCEEEEEEECCCCCeEEEEcCHHHHH
Confidence 478999999999999999999999875
No 23
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=69.99 E-value=16 Score=27.88 Aligned_cols=59 Identities=14% Similarity=0.074 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhcCCcHHHHHHHhCCCC
Q psy11150 139 KLIDEELAHLEQAVEIRDVVMSKLHEYNDIKDATQIVIGTLANLQQVTVRKLHEDFGLDK 198 (201)
Q Consensus 139 ~~l~~e~~~l~~~~~~~~~~i~lLh~YNeiKD~~q~l~g~iA~~~gvt~~~v~~e~gl~~ 198 (201)
++|.+-+..++.+++. ....+.|=.-||+++.+|++-=.=-=.+|.|..+|.+..|.+.
T Consensus 14 d~L~~ail~l~~~ee~-~~ffedL~T~~E~~alaqR~~Ia~lL~~G~SyreIa~~tG~St 72 (107)
T 3frw_A 14 DHLFEAILCLKNKEEC-YTFFEDVCTINELLSLSQRFEVAKMLTDKRTYLDISEKTGAST 72 (107)
T ss_dssp HHHHHHHHTCCSHHHH-HHHHHHHSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCCH
T ss_pred HHHHHHHHhCCCHHHH-HHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCccH
Confidence 4455555666655544 4588889999999999987632222346899999999999873
No 24
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=64.59 E-value=20 Score=27.75 Aligned_cols=60 Identities=17% Similarity=0.145 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH-HhcCCcHHHHHHHhCCCC
Q psy11150 137 KEKLIDEELAHLEQAVEIRDVVMSKLHEYNDIKDATQIVIGTLA-NLQQVTVRKLHEDFGLDK 198 (201)
Q Consensus 137 ~~~~l~~e~~~l~~~~~~~~~~i~lLh~YNeiKD~~q~l~g~iA-~~~gvt~~~v~~e~gl~~ 198 (201)
..++|.+-+..+.+.++. ......|=.-+|++..+|+ +.-+. -.+|.|.++|-++.|++.
T Consensus 29 ~~d~L~~AIl~l~~~ee~-~~fl~dL~T~~E~~aLs~R-~eV~klL~~G~syreIA~~~g~S~ 89 (119)
T 3kor_A 29 ALDELFDAILTLENREEC-YQFFDDLCTVNEIQSLSQR-LQVAKMIKQGYTYATIEQESGAST 89 (119)
T ss_dssp HHHHHHHHHHTCCSHHHH-HHHHHHHSCHHHHHHHHHH-HHHHHHHHHTCCHHHHHHHHCCCH
T ss_pred cHHHHHHHHHHhCCHHHH-HHHHHHhCCchHHHHHHHH-HHHHHHHHcCCCHHHHHHHHCCCH
Confidence 456666666777766664 6677777789999999998 32222 237899999999999874
No 25
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=51.88 E-value=9.2 Score=27.02 Aligned_cols=53 Identities=17% Similarity=0.277 Sum_probs=34.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh-hhhhhhHHHHHHHHHHH
Q psy11150 128 ESKIKDLLEKEKLIDEELAHLEQAVEIRDVVMSKLHE-YNDIKDATQIVIGTLAN 181 (201)
Q Consensus 128 ~lH~qeL~~~~~~l~~e~~~l~~~~~~~~~~i~lLh~-YNeiKD~~q~l~g~iA~ 181 (201)
.-||.+|.+..+.|+.+|..++....... .|+.|+. ==.+||--..++..-..
T Consensus 16 d~~f~~L~~eH~~LD~~I~~le~~~~~~~-~l~~LKk~KL~LKDeI~~lL~~~~~ 69 (76)
T 1zhc_A 16 NPHFDKIFEKHNQLDDDIKTAEQQNASDA-EVSHMKKQKLKLKDEIHSMIIEYRE 69 (76)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 57999999999999999999988311111 3322221 11467766666655443
No 26
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=48.90 E-value=22 Score=24.53 Aligned_cols=37 Identities=22% Similarity=0.309 Sum_probs=29.5
Q ss_pred HhhhhhhhhhHHHHHHHHHHHhc---CCcHHHHHHHhCCC
Q psy11150 161 KLHEYNDIKDATQIVIGTLANLQ---QVTVRKLHEDFGLD 197 (201)
Q Consensus 161 lLh~YNeiKD~~q~l~g~iA~~~---gvt~~~v~~e~gl~ 197 (201)
.|.+|+--.|.-+.++..+.+.- +.|.++|-+++|++
T Consensus 5 ~~~~~~~~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs 44 (77)
T 1qgp_A 5 HFQELSIYQDQEQRILKFLEELGEGKATTAHDLSGKLGTP 44 (77)
T ss_dssp HHTCTHHHHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCCC
T ss_pred hhcccCCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcC
Confidence 45566666677788888888877 89999999999986
No 27
>3nd1_A Precorrin-6A synthase/COBF protein; methyltransferase, deacetylase, transferase; HET: SAH; 1.50A {Rhodobacter capsulatus}
Probab=48.53 E-value=10 Score=32.43 Aligned_cols=28 Identities=11% Similarity=0.060 Sum_probs=25.0
Q ss_pred CCceEEEEeecCCCCceEEeecccchhc
Q psy11150 86 TADLAVGIARVGSETQHIVATSLSDMTE 113 (201)
Q Consensus 86 ~dt~~v~~aR~G~~dq~I~~g~l~el~~ 113 (201)
+++.+.++.++|.++|+|..|+++++.+
T Consensus 219 ~~~~v~v~~~l~~~~E~i~~gtL~el~~ 246 (275)
T 3nd1_A 219 DGLTIFWGACVAMPEEVLIRGPVAEVTD 246 (275)
T ss_dssp TTEEEEEEESTTSTTCEEEEEEHHHHHH
T ss_pred CCCEEEehhccCCCCcEEEEEEHHHHHH
Confidence 4788999999999999999999998754
No 28
>2aby_A Hypothetical protein TA0743; helix-turn-helix, unknown function; NMR {Thermoplasma acidophilum}
Probab=43.10 E-value=6.5 Score=31.12 Aligned_cols=52 Identities=17% Similarity=0.356 Sum_probs=34.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhcCCcHHHHHHHhCC
Q psy11150 128 ESKIKDLLEKEKLIDEELAHLEQAVEIRDVVMSKLHEYNDIKDATQIVIGTLANLQQVTVRKLHEDFGL 196 (201)
Q Consensus 128 ~lH~qeL~~~~~~l~~e~~~l~~~~~~~~~~i~lLh~YNeiKD~~q~l~g~iA~~~gvt~~~v~~e~gl 196 (201)
++|+..-.+.. ++...++.- ++-+++..|||++.-+ ..+.+.+|+|.+||++
T Consensus 84 ~lHpe~rkk~r----e~FD~~Sk~-----~Y~elm~kY~el~k~g--------~~kD~~iKeV~EEYDL 135 (146)
T 2aby_A 84 ELHPEERKKVR----EKFDENSRM-----QYSELMTKYHDLKKQG--------KIKDRPVKEVHEEYDL 135 (146)
T ss_dssp SCCHHHHHHHH----HHHHHHHHS-----CHHHHHHHHHGGGGTC--------CCCCCCCEEECSSSCS
T ss_pred hhCHHHHHHHH----HHhhhhhhh-----hHHHHHHHHHHHHhcC--------Cccccchhhhhhhhhh
Confidence 68987543333 333333321 4778899999998653 2367889999999987
No 29
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=41.33 E-value=33 Score=27.24 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=19.2
Q ss_pred HHHHhhhhhhhhh------------HHHHHHHHHHHhcC
Q psy11150 158 VMSKLHEYNDIKD------------ATQIVIGTLANLQQ 184 (201)
Q Consensus 158 ~i~lLh~YNeiKD------------~~q~l~g~iA~~~g 184 (201)
+-..+.+||.+|+ =|.-|=++|+++++
T Consensus 92 ~~~i~~EY~r~k~~K~dp~y~ekK~Rc~yL~~KLsHIK~ 130 (140)
T 1xaw_A 92 YMAAADEYNRLKQVKGSADYKSKKNHCKQLKSKLSHIKK 130 (140)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3344778888876 46678888888764
No 30
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=35.35 E-value=38 Score=25.28 Aligned_cols=29 Identities=14% Similarity=0.204 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q psy11150 136 EKEKLIDEELAHLEQAVEIRDVVMSKLHE 164 (201)
Q Consensus 136 ~~~~~l~~e~~~l~~~~~~~~~~i~lLh~ 164 (201)
.....|.+|++.|++.++.+++||+.+.+
T Consensus 6 ~~~~~Lk~El~~L~~~E~~LD~~i~~~~~ 34 (106)
T 2aze_B 6 GRLEGLTQDLRQLQESEQQLDHLMNICTT 34 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568889999999988888888876544
No 31
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=32.39 E-value=1.9e+02 Score=26.61 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=14.4
Q ss_pred chHHHHHHHhhCCCeeeEeeeccc
Q psy11150 21 SFYDKIVENKSRGLHTLCLLDIQV 44 (201)
Q Consensus 21 S~yd~I~~N~~~gLHTL~LLDIk~ 44 (201)
+..+.|.+-++.|-| |+|||.+
T Consensus 269 Ts~~~V~~vl~~Gk~--~iLdId~ 290 (468)
T 3shw_A 269 IRLHTIKQIIDQDKH--ALLDVTP 290 (468)
T ss_dssp CCHHHHHHHHTTTCE--EEECCCH
T ss_pred ccHHHHHHHHHCCCe--EEEEeCH
Confidence 456667777777765 6677753
No 32
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=31.80 E-value=47 Score=21.99 Aligned_cols=30 Identities=13% Similarity=0.145 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHHHh-cCCcHHHHHHHhCCC
Q psy11150 168 IKDATQIVIGTLANL-QQVTVRKLHEDFGLD 197 (201)
Q Consensus 168 iKD~~q~l~g~iA~~-~gvt~~~v~~e~gl~ 197 (201)
+.|.-+.|+..+++. ..++..+|-+++|++
T Consensus 8 m~~~~~~IL~~L~~~~~~~s~~eLA~~lgls 38 (67)
T 2heo_A 8 GDNLEQKILQVLSDDGGPVAIFQLVKKCQVP 38 (67)
T ss_dssp -CHHHHHHHHHHHHHCSCEEHHHHHHHHCSC
T ss_pred ccHHHHHHHHHHHHcCCCcCHHHHHHHHCcC
Confidence 344455677777765 357888888888776
No 33
>1woz_A 177AA long conserved hypothetical protein (ST1454; structural genomics, unknown function; 1.94A {Sulfolobus tokodaii}
Probab=31.09 E-value=1.7e+02 Score=23.53 Aligned_cols=30 Identities=13% Similarity=0.306 Sum_probs=20.5
Q ss_pred CCCeEEEEecCCChhHHHHHHHHHHHHHHH
Q psy11150 118 KPLHSLIISDESKIKDLLEKEKLIDEELAH 147 (201)
Q Consensus 118 ~PlHslIIpg~lH~qeL~~~~~~l~~e~~~ 147 (201)
+|+.++|+||.---.-.+-.-+.++..-++
T Consensus 97 ~~l~~FILPGg~~~aA~LH~aRtv~RRAER 126 (177)
T 1woz_A 97 GPVKLFVIPGGSEEASVLHVTRSVARRVER 126 (177)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCceecCCCCHHHHHHHHHHHHHHHHHH
Confidence 899999999974444444455666665554
No 34
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=30.55 E-value=1.4e+02 Score=22.41 Aligned_cols=49 Identities=24% Similarity=0.322 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHhhhhh----hhhhHHHHHHHHH
Q psy11150 131 IKDLLEKEKLIDEELAHLEQA-----VEIRDVVMSKLHEYN----DIKDATQIVIGTL 179 (201)
Q Consensus 131 ~qeL~~~~~~l~~e~~~l~~~-----~~~~~~~i~lLh~YN----eiKD~~q~l~g~i 179 (201)
|.+|....-.|+.|.++|+++ .+....=.+.||+-| .+||=.|.++.+-
T Consensus 8 f~KLR~La~tLe~Eta~L~~al~~edsd~E~~~~rilhdl~seV~~LK~dv~~~L~k~ 65 (101)
T 4aj5_1 8 CGKLRSLASTLDCETARLQRALDGEESDFEDYPMRILYDLHSEVQTLKDDINILLDKA 65 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888999999999885 223345556666655 5777777777663
No 35
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=29.55 E-value=45 Score=23.31 Aligned_cols=26 Identities=12% Similarity=0.084 Sum_probs=22.7
Q ss_pred HHHHHHHHHhcCCcHHHHHHHhCCCC
Q psy11150 173 QIVIGTLANLQQVTVRKLHEDFGLDK 198 (201)
Q Consensus 173 q~l~g~iA~~~gvt~~~v~~e~gl~~ 198 (201)
+.++..|++...+++.|+-++||++.
T Consensus 5 ~~Il~~L~~~g~vsv~eLa~~l~VS~ 30 (78)
T 1xn7_A 5 IQVRDLLALRGRMEAAQISQTLNTPQ 30 (78)
T ss_dssp HHHHHHHHHSCSBCHHHHHHHTTCCH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcCH
Confidence 56788899999999999999999874
No 36
>2jui_A PLNE; ampiphilic alpha helix, toxin; NMR {Lactobacillus plantarum}
Probab=29.21 E-value=10 Score=22.96 Aligned_cols=7 Identities=71% Similarity=1.488 Sum_probs=4.8
Q ss_pred CcCCcee
Q psy11150 2 YNFGETV 8 (201)
Q Consensus 2 YrFG~tv 8 (201)
|+||++|
T Consensus 6 ynfgksv 12 (33)
T 2jui_A 6 YNFGKSV 12 (33)
T ss_dssp CCSSHHH
T ss_pred cccchhH
Confidence 6777765
No 37
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=29.19 E-value=1.3e+02 Score=21.82 Aligned_cols=20 Identities=10% Similarity=0.285 Sum_probs=13.6
Q ss_pred hhhhhhHHHHHHHHHHHhcC
Q psy11150 165 YNDIKDATQIVIGTLANLQQ 184 (201)
Q Consensus 165 YNeiKD~~q~l~g~iA~~~g 184 (201)
..++-+.+|.|.+.|..+.|
T Consensus 64 L~elA~~~q~la~~i~~L~~ 83 (83)
T 1wlq_A 64 LAEVAEHVQYMAEVIERLSN 83 (83)
T ss_dssp THHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 34666777778877776654
No 38
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=28.46 E-value=1.3e+02 Score=19.98 Aligned_cols=30 Identities=13% Similarity=0.215 Sum_probs=24.2
Q ss_pred hhhHHHHHHHHHHHhcCCcHHHHHHHhCCC
Q psy11150 168 IKDATQIVIGTLANLQQVTVRKLHEDFGLD 197 (201)
Q Consensus 168 iKD~~q~l~g~iA~~~gvt~~~v~~e~gl~ 197 (201)
+...-..++..|+...++|+.+|-+.+|++
T Consensus 18 l~~~~~~il~~l~~~~~~s~~ela~~l~is 47 (109)
T 1sfx_A 18 FKPSDVRIYSLLLERGGMRVSEIARELDLS 47 (109)
T ss_dssp CCHHHHHHHHHHHHHCCBCHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCC
Confidence 455566788888888889999999999886
No 39
>3sj5_A Methyl-accepting chemotaxis protein; no or O2-sensing protein, signaling protein; HET: HEM; 1.67A {Caldanaerobacter subterraneus} SCOP: d.278.1.1 PDB: 3nvr_A* 3tf0_A* 1u4h_A* 1u56_A* 3m0b_A* 1u55_A* 3tf1_A* 1xbn_A* 3nvu_A* 3eee_A* 3iqb_A* 3lah_A* 3lai_A*
Probab=27.96 E-value=36 Score=27.27 Aligned_cols=26 Identities=12% Similarity=0.318 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHhcCCcHHHHHHHhC
Q psy11150 170 DATQIVIGTLANLQQVTVRKLHEDFG 195 (201)
Q Consensus 170 D~~q~l~g~iA~~~gvt~~~v~~e~g 195 (201)
+....|++.+|+..|++..++.+.||
T Consensus 46 ~~~~~lv~a~s~~~g~~~~~ll~~fG 71 (188)
T 3sj5_A 46 DEVRRIFAKVSEKTGKNVNEIWREVG 71 (188)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 56788999999999999999999887
No 40
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=27.78 E-value=32 Score=24.74 Aligned_cols=39 Identities=13% Similarity=0.199 Sum_probs=24.4
Q ss_pred HHHHhhhhhh--hhhHHHHHHHHHHHhcCCcHHHHHHHhCCC
Q psy11150 158 VMSKLHEYND--IKDATQIVIGTLANLQQVTVRKLHEDFGLD 197 (201)
Q Consensus 158 ~i~lLh~YNe--iKD~~q~l~g~iA~~~gvt~~~v~~e~gl~ 197 (201)
|+..--.||| +..+.+.|+..+. ..|.|.++|-+++|++
T Consensus 3 ~~~~~~~~~d~~~~~~~~~IL~lL~-~~g~sa~eLAk~LgiS 43 (82)
T 1oyi_A 3 HMASKIYIDERSNAEIVCEAIKTIG-IEGATAAQLTRQLNME 43 (82)
T ss_dssp ----------CCSHHHHHHHHHHHS-SSTEEHHHHHHHSSSC
T ss_pred ccccccCccccchHHHHHHHHHHHH-HcCCCHHHHHHHHCcC
Confidence 4444445666 4488889998888 5789999999999986
No 41
>2kii_A Putative uncharacterized protein; H-NOX, unknown function; HET: HEM; NMR {Shewanella oneidensis} PDB: 2kil_A*
Probab=26.96 E-value=39 Score=26.76 Aligned_cols=26 Identities=12% Similarity=0.295 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHhcCCcHHHHHHHhC
Q psy11150 170 DATQIVIGTLANLQQVTVRKLHEDFG 195 (201)
Q Consensus 170 D~~q~l~g~iA~~~gvt~~~v~~e~g 195 (201)
+....|++.+|+..|++..++.+.||
T Consensus 45 ~~~~~lv~a~s~~~g~~~~~ll~~fG 70 (181)
T 2kii_A 45 SELFSIVQDVAQRLNMPIQDVVKAFG 70 (181)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 46788999999999999999999988
No 42
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=26.52 E-value=1.7e+02 Score=20.48 Aligned_cols=50 Identities=18% Similarity=0.233 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHhHH-HHHHHHHHHhhhhhhhhhHHHHHHHHHHHhc
Q psy11150 134 LLEKEKLIDEELAHLEQAV-EIRDVVMSKLHEYNDIKDATQIVIGTLANLQ 183 (201)
Q Consensus 134 L~~~~~~l~~e~~~l~~~~-~~~~~~i~lLh~YNeiKD~~q~l~g~iA~~~ 183 (201)
|....+.++..++.++.+. +.....-+.+++|.++-|+-..|=--||.-|
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYR 53 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYR 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777777653 3334455678999999999988888787654
No 43
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=25.74 E-value=2.5e+02 Score=23.13 Aligned_cols=68 Identities=25% Similarity=0.289 Sum_probs=42.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh-----hhhhh-hhhHH--HHHHHHHHHhcCCcHHHHHHHhCCC
Q psy11150 129 SKIKDLLEKEKLIDEELAHLEQAVEIRDVVMSKL-----HEYND-IKDAT--QIVIGTLANLQQVTVRKLHEDFGLD 197 (201)
Q Consensus 129 lH~qeL~~~~~~l~~e~~~l~~~~~~~~~~i~lL-----h~YNe-iKD~~--q~l~g~iA~~~gvt~~~v~~e~gl~ 197 (201)
-.|.++.+.+.++++.++.+++...-+...+.-+ ..|-| |-+.+ ..|+-.+ ...+.|..+|-+++|++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~le~ig~~~~~~~l~~~l-~~~~~t~~~la~~~~l~ 191 (232)
T 2qlz_A 116 STLKEMITDFIKANKELEKVLEAFKTIESYRSSLMRKIKEAYLKEIGDMTQLAILHYLL-LNGRATVEELSDRLNLK 191 (232)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHH-HSSEEEHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHH-hcCCCCHHHHHHHhCcC
Confidence 4677888899999999999999755555544433 22333 33332 2233332 33667788888888876
No 44
>2an7_A Protein PARD; bacterial antidote, ribbon-helix-helix, DNA-binding motif, plasmid addiction, DNA binding protein; NMR {Escherichia coli}
Probab=25.60 E-value=55 Score=23.92 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHhcCCcHHHHHHHhC
Q psy11150 170 DATQIVIGTLANLQQVTVRKLHEDFG 195 (201)
Q Consensus 170 D~~q~l~g~iA~~~gvt~~~v~~e~g 195 (201)
|--..=+..+|..+|+|++++..|+=
T Consensus 10 d~qH~rLKalAa~qG~SInqli~E~l 35 (83)
T 2an7_A 10 DQQHQSLKALAALQGKTIKQYALERL 35 (83)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHc
Confidence 44455677899999999999999973
No 45
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=25.59 E-value=50 Score=23.76 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=22.7
Q ss_pred HHHHHHHHHhcCCcHHHHHHHhCCCC
Q psy11150 173 QIVIGTLANLQQVTVRKLHEDFGLDK 198 (201)
Q Consensus 173 q~l~g~iA~~~gvt~~~v~~e~gl~~ 198 (201)
+.|+..|++...+++.|+-++||++.
T Consensus 5 ~~Il~~L~~~g~vsv~eLA~~l~VS~ 30 (87)
T 2k02_A 5 MEVRDMLALQGRMEAKQLSARLQTPQ 30 (87)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHTTCCH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcCH
Confidence 56788899999999999999999874
No 46
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, STR genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum}
Probab=25.58 E-value=31 Score=26.83 Aligned_cols=23 Identities=4% Similarity=0.213 Sum_probs=16.7
Q ss_pred CCCCeEEEEecCCChhHHHHHHH
Q psy11150 117 GKPLHSLIISDESKIKDLLEKEK 139 (201)
Q Consensus 117 G~PlHslIIpg~lH~qeL~~~~~ 139 (201)
-.++|.||||-+-|..++.+...
T Consensus 35 ~~~~H~LVIPk~~H~~~l~dL~~ 57 (149)
T 3i4s_A 35 ANYPWLLLVPRRPDAVEIIDLDE 57 (149)
T ss_dssp TTSCEEEEEECCTTCCSGGGSCH
T ss_pred CCCCEEEEEecccccCChhHCCH
Confidence 45679999998767777665433
No 47
>3tfg_A ALR2278 protein; heme-based sensor domain, GAS binding, signaling protein; HET: HEM; 1.90A {Nostoc SP} PDB: 3tfd_A* 3tfe_A* 3tff_A* 2o09_A* 2o0c_A* 2o0g_A* 3l6j_A* 3tf8_A* 3tf9_A* 3tfa_A*
Probab=24.88 E-value=45 Score=26.59 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHhcCCcHHHHHHHhC
Q psy11150 170 DATQIVIGTLANLQQVTVRKLHEDFG 195 (201)
Q Consensus 170 D~~q~l~g~iA~~~gvt~~~v~~e~g 195 (201)
+....|+..+|+..|++..++.+.||
T Consensus 46 ~~~~~lv~~~s~~~g~~~~~ll~~fG 71 (189)
T 3tfg_A 46 DVTYHLVGAASEVLGKPAEEWWIAFG 71 (189)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 56788999999999999999999987
No 48
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=24.71 E-value=41 Score=22.57 Aligned_cols=16 Identities=19% Similarity=0.138 Sum_probs=12.7
Q ss_pred CCCCCHHHHHHHHHHH
Q psy11150 62 PRFMSVSQAAQQLVEI 77 (201)
Q Consensus 62 ~r~Mt~~eA~~~Lle~ 77 (201)
-+.||+.||+.||--+
T Consensus 10 ~kpmsveEAv~qmel~ 25 (57)
T 3k2t_A 10 LKPMDSEEAVLQMNLL 25 (57)
T ss_dssp -CCBCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhC
Confidence 3579999999988665
No 49
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=24.09 E-value=1.6e+02 Score=21.36 Aligned_cols=38 Identities=24% Similarity=0.324 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHH---------------HHHHHhhhhhhhh
Q psy11150 132 KDLLEKEKLIDEELAHLEQAVEIRD---------------VVMSKLHEYNDIK 169 (201)
Q Consensus 132 qeL~~~~~~l~~e~~~l~~~~~~~~---------------~~i~lLh~YNeiK 169 (201)
+.|.+.++.|-+++..++...+.++ .--+..++||+.+
T Consensus 14 ~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~ 66 (96)
T 3q8t_A 14 KELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFK 66 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444455555555555555322222 3345567788765
No 50
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=23.81 E-value=1.3e+02 Score=22.60 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhhhhh---hhhhHHHHHHHHHHHhcC
Q psy11150 152 VEIRDVVMSKLHEYN---DIKDATQIVIGTLANLQQ 184 (201)
Q Consensus 152 ~~~~~~~i~lLh~YN---eiKD~~q~l~g~iA~~~g 184 (201)
.+.+++.-.+||+|+ .|++-||.|.....+.|-
T Consensus 31 ~~ElqqFA~Llr~YR~G~~I~~Fc~kLl~LyG~~Rk 66 (98)
T 4fqn_A 31 SQEIQQFAALLHEYRNGASIHEFCINLRQLYGDSRK 66 (98)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCGGGG
T ss_pred hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhchHHH
Confidence 455678999999998 578889999888766654
No 51
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=23.16 E-value=2.5e+02 Score=21.36 Aligned_cols=26 Identities=15% Similarity=0.349 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy11150 132 KDLLEKEKLIDEELAHLEQAVEIRDV 157 (201)
Q Consensus 132 qeL~~~~~~l~~e~~~l~~~~~~~~~ 157 (201)
.+|++....|+.++..++..-+.+++
T Consensus 3 ~~L~~~~~~L~~~i~~l~~~L~~lkq 28 (122)
T 3viq_A 3 MQLLSRRLKLEKEVRNLQEQLITAET 28 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777888888777776555543
No 52
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=22.65 E-value=46 Score=23.05 Aligned_cols=16 Identities=19% Similarity=0.133 Sum_probs=13.0
Q ss_pred CCCCCHHHHHHHHHHH
Q psy11150 62 PRFMSVSQAAQQLVEI 77 (201)
Q Consensus 62 ~r~Mt~~eA~~~Lle~ 77 (201)
-+.||+.||+.||--+
T Consensus 10 ~kpMsveEAv~qmel~ 25 (65)
T 3ka5_A 10 IKPMSEEEAVLEMELL 25 (65)
T ss_dssp CSCBCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhC
Confidence 4679999999987655
No 53
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=21.58 E-value=30 Score=24.71 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=24.8
Q ss_pred hhhhhhHHHHHHHHHHHh---cCCcHHHHHHHhCCC
Q psy11150 165 YNDIKDATQIVIGTLANL---QQVTVRKLHEDFGLD 197 (201)
Q Consensus 165 YNeiKD~~q~l~g~iA~~---~gvt~~~v~~e~gl~ 197 (201)
|||+ |+.+.+...|+.+ +..|.++|-+++|++
T Consensus 8 ~~~~-~~~~~v~~~i~~L~~~~~~Ta~~IAkkLg~s 42 (75)
T 1sfu_A 8 VNDA-EIFSLVKKEVLSLNTNDYTTAISLSNRLKIN 42 (75)
T ss_dssp CCSH-HHHHHHHHHHHTSCTTCEECHHHHHHHTTCC
T ss_pred cchH-HHHHHHHHHHHhCCCCcchHHHHHHHHHCCC
Confidence 5777 7888887776654 448999999999986
No 54
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A*
Probab=21.32 E-value=39 Score=25.37 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=13.6
Q ss_pred CCCeEEEEecCCChhHHHH
Q psy11150 118 KPLHSLIISDESKIKDLLE 136 (201)
Q Consensus 118 ~PlHslIIpg~lH~qeL~~ 136 (201)
.|-|+||||-+ |..++.+
T Consensus 32 ~pgh~LViPk~-h~~~~~d 49 (147)
T 1fit_A 32 VPGHVLVCPLR-PVERFHD 49 (147)
T ss_dssp STTCEEEEESS-CCSSGGG
T ss_pred CCcEEEEEEcc-ccCChhh
Confidence 68899999965 6665554
No 55
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=21.08 E-value=50 Score=22.93 Aligned_cols=16 Identities=25% Similarity=0.221 Sum_probs=12.5
Q ss_pred CCCCCHHHHHHHHHHH
Q psy11150 62 PRFMSVSQAAQQLVEI 77 (201)
Q Consensus 62 ~r~Mt~~eA~~~Lle~ 77 (201)
-+.||+.||+.||--+
T Consensus 11 ~kpMsveEAv~qMel~ 26 (66)
T 3lyv_A 11 LKPMDVEEARLQMELL 26 (66)
T ss_dssp CCEECHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHcC
Confidence 4679999999887543
No 56
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=20.84 E-value=2e+02 Score=19.28 Aligned_cols=48 Identities=23% Similarity=0.335 Sum_probs=35.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh-hhhhhhhhHHHHHHH
Q psy11150 130 KIKDLLEKEKLIDEELAHLEQAVEIRDVVMSKL-HEYNDIKDATQIVIG 177 (201)
Q Consensus 130 H~qeL~~~~~~l~~e~~~l~~~~~~~~~~i~lL-h~YNeiKD~~q~l~g 177 (201)
...+|.+....|..|-.+|.++.+-...|+.+| ++--++|.+.-.|=|
T Consensus 4 sYdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~ 52 (54)
T 1deb_A 4 SYDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQG 52 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcc
Confidence 567888888888888888888877777888665 455566666555543
No 57
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} SCOP: d.13.1.0 PDB: 3n1t_A*
Probab=20.80 E-value=31 Score=25.26 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=13.2
Q ss_pred CCCCeEEEEecCCChhHHHH
Q psy11150 117 GKPLHSLIISDESKIKDLLE 136 (201)
Q Consensus 117 G~PlHslIIpg~lH~qeL~~ 136 (201)
-.|-|+||||- -|..++.+
T Consensus 35 ~~pgH~LViPk-~Hv~~l~d 53 (119)
T 3n1s_A 35 QAPTHILIIPN-ILIPTVND 53 (119)
T ss_dssp SSSEEEEEEES-SCCCSGGG
T ss_pred CCCCeEEEEeh-hHhCCHhH
Confidence 36789999995 45555544
Done!