RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11150
(201 letters)
>3i4t_A Diphthine synthase; niaid, ssgcid, infectious disease, anaerobic
parasitic protozoan, structural genomics, decode, UW,
SBRI; 2.49A {Entamoeba histolytica}
Length = 292
Score = 122 bits (308), Expect = 1e-34
Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 4/142 (2%)
Query: 1 LYNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYL 60
LY FG+TVS+ FW+E W+P S+Y KI N+ +HTL LLDI+VKE + ES+ K +
Sbjct: 145 LYRFGQTVSVCFWSEHWRPSSYYPKIKINRDNNMHTLVLLDIKVKERSEESIIKGRDIFE 204
Query: 61 PPRFMSVSQAAQQLVEITK--TKPGLSTADLAVGIARVGSETQHIVATSLSDMTETNMGK 118
PPR+M+++Q +QL+E+ K + VG+ARV Q IV + D+ + G
Sbjct: 205 PPRYMTINQCIEQLLEVEKEQHLGVYDEDTMVVGMARVACADQKIVYGKMKDLLHYDFGA 264
Query: 119 PLHSLIISDESKIKDLLEKEKL 140
P+H L+I + D E ++L
Sbjct: 265 PMHCLLIP--APQVDDPELDQL 284
>2z6r_A Diphthine synthase; methyltransferase, S-adenosyl-L-methionine,
transferase; HET: SAH MES; 1.50A {Pyrococcus horikoshii}
PDB: 2dek_A* 1wng_A* 1vce_A* 2ed3_A* 2e4r_A* 2owg_A*
2ek3_A* 2pcm_A* 2p5c_A* 2hut_A* 2emr_A* 2el3_A* 2el0_A*
2ejk_A* 2eld_A* 2el2_A* 2eka_A* 2eh5_A* 2pcg_A* 2el1_A*
...
Length = 265
Score = 108 bits (272), Expect = 2e-29
Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 17/127 (13%)
Query: 1 LYNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYL 60
+Y FG++ ++ + +W P S+YD I EN RGLHTL LDI+ +
Sbjct: 127 IYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAE--------------- 171
Query: 61 PPRFMSVSQAAQQLVEITK--TKPGLSTADLAVGIARVGSETQHIVATSLSDMTETNMGK 118
+M+ ++A + L+++ + L V +AR GS I A + D+ + G
Sbjct: 172 KRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGD 231
Query: 119 PLHSLII 125
P H LI+
Sbjct: 232 PPHILIV 238
>1wde_A Probable diphthine synthase; structural genomics, conserved
hypothetical protein, riken S genomics/proteomics
initiative, RSGI, transferase; 2.00A {Aeropyrum pernix}
SCOP: c.90.1.1
Length = 294
Score = 102 bits (255), Expect = 8e-27
Identities = 33/172 (19%), Positives = 60/172 (34%), Gaps = 28/172 (16%)
Query: 1 LYNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYL 60
Y FG TV++P P S +I N GLHT LLD+ +
Sbjct: 134 FYRFGGTVTLPGPWRGVTPISVARRIYLNLCAGLHTTALLDVDER--------------- 178
Query: 61 PPRFMSVSQAAQQLVEITK-------TKPGLSTADLAVGIARVGSETQHIVATSLSDMTE 113
+S Q L+E + L+ + A G + + +SL ++
Sbjct: 179 -GVQLSPGQGVSLLLEADREYAREAGAPALLARLPSVLVEAGAGGGHRVLYWSSLERLST 237
Query: 114 TNMGKPLHSLIISDESKIKDLLEKEKLIDEELAHLEQAVEIRDVVMSKLHEY 165
++ ++S++I L E+ + + + +E V + E
Sbjct: 238 ADVEGGVYSIVI-----PARLSGVEEWLLAAASGQRRPLEYDRSVYETVEEN 284
>1vhv_A Diphthine synthase; structural genomics, transferase; HET: MSE;
1.75A {Archaeoglobus fulgidus} SCOP: c.90.1.1
Length = 268
Score = 96.9 bits (241), Expect = 8e-25
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 28/140 (20%)
Query: 1 LYNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYL 60
Y FG++ ++ + + + I N+S HTL LD+
Sbjct: 138 NYRFGKSATVSWHR----SQTPVNVIKANRSIDAHTLLFLDLH----------------- 176
Query: 61 PPRFMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATSLSDMTETNMGKPL 120
P M++ A + L+ AVGIAR GS + + L ++ + + GKPL
Sbjct: 177 -PEPMTIGHAVENLIAEDAQMKD----LYAVGIARAGSGEEVVKCDRLENLKKIDFGKPL 231
Query: 121 HSLIISDESKIKDLLEKEKL 140
H +++ +K +E E L
Sbjct: 232 HVMVV--LAKTLHFMEFECL 249
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 7e-06
Identities = 37/237 (15%), Positives = 84/237 (35%), Gaps = 64/237 (27%)
Query: 3 NFGETVSIPFW--TESWK-------PDSFYDKIVENKSRGLHT--LCLLDIQVKEPTLES 51
+ + +++ F+ ++ P S + +EN + G+ + L + ++ ++ ++
Sbjct: 295 SVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN-NEGVPSPMLSISNLTQEQ--VQD 351
Query: 52 LTKKTRQYLPPR---FMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATSL 108
KT +LP +S+ A+ LV ++ G L + + A S
Sbjct: 352 YVNKTNSHLPAGKQVEISLVNGAKNLV-VS----G-PPQSL----YGLNLTLRKAKAPSG 401
Query: 109 SDMTETNMGK--------------PLHS--LIISDESKIKDLLEKEKLID-EELA----H 147
D + + P HS L+ + + KDL++ + +++
Sbjct: 402 LDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD 461
Query: 148 LEQAVEIR-----------DVVMSK-LH-EYNDIKDATQIVI---GTLANLQQVTVR 188
++R D ++ + E AT I+ G + L +T R
Sbjct: 462 TFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHR 518
Score = 33.9 bits (77), Expect = 0.032
Identities = 26/127 (20%), Positives = 41/127 (32%), Gaps = 25/127 (19%)
Query: 80 TKP-GLSTADLAVGIARVGSETQHIVATSLSDMTETNMGKPLHSLIISDESKIKDLLEKE 138
T+P LS L + V +A+ L + + +P DE E
Sbjct: 6 TRPLTLSHGSLEHVLL-V-PTASFFIASQLQEQFNKILPEPTEGFAADDE--PTTPAE-- 59
Query: 139 KLIDEELAHLEQAVE------IRDVVMSKLHEY-------NDIKDATQIVIGTLANLQQV 185
L+ + L ++ VE V+ L E+ NDI + L
Sbjct: 60 -LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI----HALAAKLLQENDT 114
Query: 186 TVRKLHE 192
T+ K E
Sbjct: 115 TLVKTKE 121
Score = 32.7 bits (74), Expect = 0.075
Identities = 32/192 (16%), Positives = 62/192 (32%), Gaps = 70/192 (36%)
Query: 70 AAQQLVEI-TKTKP----GL-------STADLA---VG-IARV-----GSETQHIVATSL 108
A QL E K P G + A+L +G ++ + + ++ L
Sbjct: 29 IASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCL 88
Query: 109 SDMTETNM-GKPLHSLIIS-DESKIKDLLEKEKLI----------DEELAH-----LEQA 151
++ + G +H+L + L++ ++LI L +A
Sbjct: 89 TEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA 148
Query: 152 V----------------------EIRDVVMSKLHE-YND-IKDATQIVIGTLANL--QQV 185
V E+RD L++ Y+ + D + TL+ L +
Sbjct: 149 VGEGNAQLVAIFGGQGNTDDYFEELRD-----LYQTYHVLVGDLIKFSAETLSELIRTTL 203
Query: 186 TVRKLHEDFGLD 197
K+ GL+
Sbjct: 204 DAEKVFTQ-GLN 214
Score = 31.2 bits (70), Expect = 0.24
Identities = 24/150 (16%), Positives = 45/150 (30%), Gaps = 49/150 (32%)
Query: 21 SFYD--KIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLPPRFM----SVSQAAQQL 74
S ++V RG T Q PR + A
Sbjct: 1778 SIESLVEVV--FYRG---------------------MTMQVAVPRDELGRSNYGMIA--- 1811
Query: 75 VEITKTKPGLSTADLAVGIARVGSETQHIVATSLSDMTET-NMGKPLHSLIISDE----S 129
+ + S L + RVG T +V E N + + +
Sbjct: 1812 INPGRVAASFSQEALQYVVERVGKRTGWLV--------EIVNYNVENQQYVAAGDLRALD 1863
Query: 130 KIKDLLE--KEKLIDEELAHLEQAVEIRDV 157
+ ++L K + ID + L++++ + +V
Sbjct: 1864 TVTNVLNFIKLQKID--IIELQKSLSLEEV 1891
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.008
Identities = 38/239 (15%), Positives = 83/239 (34%), Gaps = 56/239 (23%)
Query: 12 FWTESWKPDSFYDKIVENKSRGLHTLCLLDIQV--KEPTLES---LTKKTRQY-----LP 61
FWT K + K VE R + + I+ ++P++ + + ++ R Y
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 62 PRFMSVSQAAQQLVE-ITKTKPGLSTADLAV-GIARVGSETQHIVATSLSDM-TETNMGK 118
+S Q +L + + + +P ++ + G+ GS + + M
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPA---KNVLIDGVL--GSGKTWVALDVCLSYKVQCKMDF 182
Query: 119 PLHSLIISDESKIKDLLEK-EKL---IDEELA-----------HLEQA-VEIRDVVMSKL 162
+ L + + + + +LE +KL ID + E+R ++ SK
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 163 HEY-----NDIKDAT---------QIVIGT--------LANLQQVTVRKLHEDFGLDKP 199
+E ++++A +I++ T L+ + H L
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Score = 35.2 bits (80), Expect = 0.010
Identities = 37/226 (16%), Positives = 63/226 (27%), Gaps = 71/226 (31%)
Query: 12 FW---TESWKPDSFYDKIVENKSRGLHTLC---------LLDIQVKEP-TLESLTKKTRQ 58
FW P++ ++E L L D + S+ + R
Sbjct: 185 FWLNLKNCNSPET----VLEM----LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR- 235
Query: 59 YLPPRFMSVSQAAQQL-----VEITKT--------KPGLSTADLAVGIARVGSETQHIVA 105
R + L V+ K K L+T V + T HI
Sbjct: 236 ----RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 106 TSLSD-MTETNMGKPLHSLIISDESKIKDLLEKEKLIDEELAHL-EQAVEIRDVVMS--- 160
S +T DE K LL K +D L + + +S
Sbjct: 292 DHHSMTLTP-------------DEVK--SLLLK--YLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 161 -KLHE---------YNDIKDATQIVIGTLANLQQVTVRKLHEDFGL 196
+ + + + T I+ +L L+ RK+ + +
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Score = 32.9 bits (74), Expect = 0.070
Identities = 32/230 (13%), Positives = 58/230 (25%), Gaps = 88/230 (38%)
Query: 4 FGETVSIP------FWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTR 57
F + IP W + D V LH L++ Q KE T+
Sbjct: 381 FPPSAHIPTILLSLIWFDV----IKSD--VMVVVNKLHKYSLVEKQPKESTI-------- 426
Query: 58 QYLPPRFMSVSQAA-------QQLVEITKTKPGLSTADLAVG---------IARVGSETQ 101
+P ++ + + +V+ + DL I
Sbjct: 427 -SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH------ 479
Query: 102 HIVATSLSDMTETNMGKPLHSLIISD----ESKIK-----------------DLLEKEKL 140
H+ + L ++ D E KI+ L +
Sbjct: 480 HLKNIEHPERMT------LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 141 IDEELAHLEQAVEIRDVVMSKLHEYNDIKD-----ATQIVIGTLANLQQV 185
I + E+ V N I D ++ +L ++
Sbjct: 534 ICDNDPKYERLV-------------NAILDFLPKIEENLICSKYTDLLRI 570
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken
structural genomics/PR initiative, RSGI, hydrolase;
1.70A {Pyrococcus horikoshii} PDB: 1pv9_A
Length = 351
Score = 32.2 bits (74), Expect = 0.092
Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 16/119 (13%)
Query: 52 LTKKTRQYL--PPRFMSVSQAAQQL-VEITKTKPGLSTADLAVGIARVGSETQHIVATSL 108
L L P A ++ + + K K GI +G E + +
Sbjct: 46 LITGESATLYVPELE--YEMAKEESNIPVEKFKKMDEFYKALEGIKSLGIE-SSLPYGFI 102
Query: 109 SDMTETNMGKPLHSL--IISDESKIKDLLEKEKLIDEELAHLEQAVEIRDVVMSKLHEY 165
++ + K + +I D IK ++E+ +E+A EI D + E
Sbjct: 103 EELKKKANIKEFKKVDDVIRDMRIIKS--------EKEIKIIEKACEIADKAVMAAIEE 153
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima}
Length = 359
Score = 30.3 bits (69), Expect = 0.35
Identities = 16/124 (12%), Positives = 41/124 (33%), Gaps = 20/124 (16%)
Query: 52 LTKKTRQYL--PPRFMSVSQAAQQ----LVEITKTKPGLSTADLA--VGIARVGSETQHI 103
L + + L R+ QA Q+ + E+ + I + E + +
Sbjct: 46 LISENTRLLITDSRY--TVQAKQETDFEVREVKGGDFIDVLKKTVNDLKIKTIALEEERV 103
Query: 104 VATSLSDMTETNMGKPLHSL--IISDESKIKDLLEKEKLIDEELAHLEQAVEIRDVVMSK 161
+ ++ + + + +KD + E+ ++QA+EI + +
Sbjct: 104 SLSLFRRISSAFGDRKFIGIDDEVKQMRMVKD--------EGEIEKIKQAIEISERAFLE 155
Query: 162 LHEY 165
+
Sbjct: 156 TVQQ 159
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop,
phenylalanine mutant, hydrolase; 2.35A {Pyrococcus
horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A
3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A
3sdz_A
Length = 588
Score = 29.7 bits (67), Expect = 0.57
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 12/72 (16%)
Query: 129 SKIKDLLEK--EKLIDEELAHLEQAVEIRDVVMSKLHEYNDIKDATQIV-IGTLANLQQV 185
S D ++ K ID E +RD M+ L + +++++ +IV L ++
Sbjct: 437 SLYVDAVKDWWHKNIDPEW------KAMRDKAMALLQKESELQEIVRIVGPDALPERERA 490
Query: 186 TV---RKLHEDF 194
+ R L ED+
Sbjct: 491 ILLVARMLREDY 502
>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine
deaminase, PLP, threonine DEH L-threonine metabolism;
HET: LLP; 1.70A {Salmonella typhimurium} PDB: 2gn1_A*
2gn2_A*
Length = 342
Score = 29.1 bits (66), Expect = 0.81
Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 24/85 (28%)
Query: 65 MSVSQAAQQLVEITKTKPGLST-ADLAVGIA--RVGSETQHIVATSLSDMTETNMGKPLH 121
M+ S ++ T AD G R G+ T IV + D+
Sbjct: 229 MAASYYTGEITTH----RTTGTLAD---GCDVSRPGNLTYEIVRELVDDI---------- 271
Query: 122 SLIISDE---SKIKDLLEKEKLIDE 143
+++S++ + + L+++ K+I E
Sbjct: 272 -VLVSEDEIRNSMIALIQRNKVITE 295
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2,
protein struct initiative, northeast structural
genomics consortium, NESG; 1.63A {Escherichia coli}
SCOP: a.35.1.3 PDB: 2icp_A
Length = 94
Score = 26.1 bits (58), Expect = 3.2
Identities = 8/47 (17%), Positives = 21/47 (44%), Gaps = 8/47 (17%)
Query: 57 RQYLPPRFMSVSQAAQQL-------VEITKTKPGLSTADLAVGIARV 96
++ L +S+ + A+ + + K L T ++A+ ++ V
Sbjct: 14 QESLDELNVSLREFARAMEIAPSTASRLLTGKAAL-TPEMAIKLSVV 59
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION TRA hydrolase, ION transport;
2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A
3j0j_A* 1um2_C
Length = 578
Score = 27.4 bits (61), Expect = 3.5
Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 12/72 (16%)
Query: 129 SKIKDLLEK--EKLIDEELAHLEQAVEIRDVVMSKLHEYNDIKDATQIV-IGTLANLQQV 185
S L+ + + E+ E+RD + L +++ Q+V L + +++
Sbjct: 429 SLFTSALDPWYRENVAEDY------PELRDAISELLQREAGLQEIVQLVGPDALQDAERL 482
Query: 186 TV---RKLHEDF 194
+ R + EDF
Sbjct: 483 VIEVGRIIREDF 494
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex,
amino-acid BIOS lysine biosynthesis, transferase; HET:
AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A*
3a9i_A*
Length = 382
Score = 27.5 bits (62), Expect = 3.5
Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 129 SKIKDLLEKEKLIDEELAHLEQAVEIRDVVMSKLHEYN 166
IK L ++ +L EEL + +R+ + + H ++
Sbjct: 350 QHIKALADRGQLTLEELDRI-----LREWITAHHHHHH 382
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical
protein, JW0472, structural genomics, NPPSFA; 2.25A
{Escherichia coli}
Length = 113
Score = 26.3 bits (58), Expect = 3.7
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 8/45 (17%)
Query: 59 YLPPRFMSVSQAAQQL-------VEITKTKPGLSTADLAVGIARV 96
YL P + +++ A+ L + L T ++A +A+V
Sbjct: 19 YLEPLDLKINELAELLHVHRNSVSALINNNRKL-TTEMAFRLAKV 62
>3cec_A Putative antidote protein of plasmid maintenance; structural
genomics, joint center for structural genomics, J
protein structure initiative; HET: MSE; 1.60A {Nostoc
punctiforme}
Length = 104
Score = 26.1 bits (58), Expect = 3.8
Identities = 7/47 (14%), Positives = 18/47 (38%), Gaps = 8/47 (17%)
Query: 57 RQYLPPRFMSVSQAAQQL-------VEITKTKPGLSTADLAVGIARV 96
L ++ + A+ L E+ + + T D+A+ + +
Sbjct: 24 ADILDDLDINTANFAEILGVSNQTIQEVINGQRSI-TVDIAIRLGKA 69
>1ylm_A Hypothetical protein BSU32300; MCSG, structural genomics,
hypothetical cytosolic protein, PSI, protein structure
initiative; 1.83A {Bacillus subtilis subsp}
Length = 144
Score = 26.5 bits (58), Expect = 4.8
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 131 IKDLLEKEKLIDEELAH-LEQAVEIRDVVMSKLHEYNDI 168
I D+L EK++ E+ L++ + R + + +Y
Sbjct: 71 IMDILVDEKVVTEKEGDELKKLIAYRKTL---VQQYLLA 106
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for
structural genomics O infectious diseases,
aminopeptidase, viral protein; 1.97A {Bacillus
anthracis}
Length = 356
Score = 26.8 bits (60), Expect = 5.9
Identities = 25/124 (20%), Positives = 42/124 (33%), Gaps = 21/124 (16%)
Query: 52 LTKKTRQYL--PPRFMSVSQAAQQLVEITKTKPGLSTADLAV------GIARVGSETQHI 103
L K R R+ V QA++Q V + D GI ++G E +
Sbjct: 44 LISKKRAQFITDFRY--VEQASKQAVGYEIVQHAGLIIDEVAKQVKELGIQKLGFEQDTL 101
Query: 104 VATSLSDMTETNMGKPLHSL--IISDESKIKDLLEKEKLIDEELAHLEQAVEIRDVVMSK 161
+S S E + ++ IK D E+ L++A +I D
Sbjct: 102 TYSSYSAHKE-AIDAEFIPTSGLVEKLRLIKT--------DSEIKILKEAAQIADAAFEH 152
Query: 162 LHEY 165
+ +
Sbjct: 153 ILSF 156
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal
element functions, DNA binding P; 2.00A {Coxiella
burnetii}
Length = 104
Score = 25.4 bits (56), Expect = 6.0
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 8/45 (17%)
Query: 59 YLPPRFMSVSQAAQQL-------VEITKTKPGLSTADLAVGIARV 96
MS +Q A+ L I + TAD A+ +A+
Sbjct: 22 LGFLDKMSANQLAKHLAIPTNRVTAILNGARSI-TADTALRLAKF 65
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer,
regulation, pyridoxal PHOS isoleucine biosynthesis; HET:
PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2
d.58.18.2
Length = 514
Score = 26.4 bits (59), Expect = 7.4
Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 22/84 (26%)
Query: 65 MSVSQAAQQLVEITKTKPGLSTADL-AVGIA--RVGSETQHIVATSLSDMTETNMGKPLH 121
+ + A V+ L L A G+A R+G ET + L D+
Sbjct: 220 LKAALDAGHPVD-------LPRVGLFAEGVAVKRIGDETFRLCQEYLDDII--------- 263
Query: 122 SLIISDE--SKIKDLLEKEKLIDE 143
+ SD + +KDL E + + E
Sbjct: 264 -TVDSDAICAAMKDLFEDVRAVAE 286
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of
aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Length = 181
Score = 26.0 bits (58), Expect = 7.9
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 187 VRKLHEDFGLDKP 199
V LHE FGL
Sbjct: 150 VVALHEAFGLGGD 162
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit,
transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Length = 167
Score = 25.9 bits (58), Expect = 8.1
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 187 VRKLHEDFGLDK 198
+R +H+ F LDK
Sbjct: 149 LRAVHQAFELDK 160
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis,
defensive PROT jasmonic acid pathway, jasmonic
acid,structural genomics; HET: LLP 15P; 2.35A {Solanum
lycopersicum}
Length = 366
Score = 26.0 bits (58), Expect = 8.3
Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 22/84 (26%)
Query: 65 MSVSQAAQQLVEITKTKPGLSTADL-AVGIA--RVGSETQHIVATSLSDMTETNMGKPLH 121
M++S V+ LS D A G+A VG T + M
Sbjct: 249 MTLSLHEGHRVK-------LSNVDTFADGVAVALVGEYTFAKCQELIDGMV--------- 292
Query: 122 SLIISDE--SKIKDLLEKEKLIDE 143
L+ +D + IKD+ ++ + I E
Sbjct: 293 -LVANDGISAAIKDVYDEGRNILE 315
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit,
transferase; HET: CIT; 1.58A {Corynebacterium
glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Length = 178
Score = 26.0 bits (58), Expect = 8.5
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 187 VRKLHEDFGLDKP 199
R LHE F L
Sbjct: 149 ARALHEQFQLGGE 161
>1j5s_A Uronate isomerase; TM0064, structural genomics, JCSG, PSI, protein
structure initiative, joint center for structural
genomics; 2.85A {Thermotoga maritima} SCOP: c.1.9.8
Length = 463
Score = 26.2 bits (57), Expect = 9.1
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Query: 127 DESKIKDLLEKEKLIDEELAHLEQAVEIRDVVMSKLHEYNDIKDATQIVIGTLANLQQVT 186
DE++ + + EK E+L E +++ + TQ+ IG L + +
Sbjct: 255 DENRARAVHEK-AFSGEKLTQDEINDYKAFMMVQFGKMNQETNWVTQLHIGALRDYRDSL 313
Query: 187 VRKLHEDFGLDKP 199
+ L D G D
Sbjct: 314 FKTLGPDSGGDIS 326
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.131 0.364
Gapped
Lambda K H
0.267 0.0694 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,935,811
Number of extensions: 165859
Number of successful extensions: 387
Number of sequences better than 10.0: 1
Number of HSP's gapped: 382
Number of HSP's successfully gapped: 40
Length of query: 201
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 112
Effective length of database: 4,216,824
Effective search space: 472284288
Effective search space used: 472284288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.0 bits)