RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11150
(201 letters)
>d2deka1 c.90.1.1 (A:1-265) Diphthine synthase, DphB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 265
Score = 85.2 bits (210), Expect = 6e-21
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 17/127 (13%)
Query: 1 LYNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYL 60
+Y FG++ ++ + +W P S+YD I EN RGLHTL LDI+ ++
Sbjct: 127 IYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKR------------- 173
Query: 61 PPRFMSVSQAAQQLVEITKT--KPGLSTADLAVGIARVGSETQHIVATSLSDMTETNMGK 118
+M+ ++A + L+++ + L V +AR GS I A + D+ + G
Sbjct: 174 --MYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGD 231
Query: 119 PLHSLII 125
P H LI+
Sbjct: 232 PPHILIV 238
>d1wdea_ c.90.1.1 (A:) Diphthine synthase, DphB {Aeropyrum pernix
[TaxId: 56636]}
Length = 289
Score = 75.2 bits (184), Expect = 5e-17
Identities = 31/162 (19%), Positives = 56/162 (34%), Gaps = 28/162 (17%)
Query: 2 YNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLP 61
Y FG TV++P P S +I N GLHT LLD+ +
Sbjct: 130 YRFGGTVTLPGPWRGVTPISVARRIYLNLCAGLHTTALLDVDER---------------- 173
Query: 62 PRFMSVSQAAQQLVEITK-------TKPGLSTADLAVGIARVGSETQHIVATSLSDMTET 114
+S Q L+E + L+ + A G + + +SL ++
Sbjct: 174 GVQLSPGQGVSLLLEADREYAREAGAPALLARLPSVLVEAGAGGGHRVLYWSSLERLSTA 233
Query: 115 NMGKPLHSLIISDESKIKDLLEKE--KLIDEELAHLEQAVEI 154
++ ++S++I +E+ + LE +
Sbjct: 234 DVEGGVYSIVIPAR---LSGVEEWLLAAASGQRRPLEYDRSV 272
>d1vhva_ c.90.1.1 (A:) Diphthine synthase, DphB {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 251
Score = 70.2 bits (171), Expect = 2e-15
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 28/139 (20%)
Query: 2 YNFGETVSIPFWTESWKPDSFYDKIVENKSRGLHTLCLLDIQVKEPTLESLTKKTRQYLP 61
Y FG++ ++ + + + I N+S HTL LD+
Sbjct: 127 YRFGKSATVSWHR----SQTPVNVIKANRSIDAHTLLFLDLH------------------ 164
Query: 62 PRFMSVSQAAQQLVEITKTKPGLSTADLAVGIARVGSETQHIVATSLSDMTETNMGKPLH 121
P M++ A + L+ + AVGIAR GS + + L ++ + + GKPLH
Sbjct: 165 PEPMTIGHAVENLIA----EDAQMKDLYAVGIARAGSGEEVVKCDRLENLKKIDFGKPLH 220
Query: 122 SLIISDESKIKDLLEKEKL 140
+++ +K +E E L
Sbjct: 221 VMVV--LAKTLHFMEFECL 237
>d1h8la2 c.56.5.1 (A:4-304) Carboxypeptidase D, catalytic domain
{Crested duck (Lophonetta specularioides) [TaxId: 8836]}
Length = 301
Score = 27.9 bits (61), Expect = 0.72
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 106 TSLSDMTETNMGKPLHSLIISDESKIKDLLEKEKLID-----EELAHLEQAVEIRDVVMS 160
T L + ++ + L+ + ISD I + E E E+ E + + + +
Sbjct: 31 TRLYSVGKSVELRELYVMEISDNPGIHEAGEPEFKYIGNMHGNEVVGRELLLNLIEYLCK 90
Query: 161 KLHEYNDIKDATQIV 175
++ D Q
Sbjct: 91 NFGTDPEVTDLVQST 105
>d1uwya2 c.56.5.1 (A:1-296) Carboxypeptidase M, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 296
Score = 27.9 bits (61), Expect = 0.76
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 106 TSLSDMTETNMGKPLHSLIISDESKIKDLLEKEKLID 142
T L + ++ G+ L L++ K + E
Sbjct: 26 THLHSIGKSVKGRNLWVLVVGRFPKEHRIGIPEFKYV 62
>d1ve2a1 c.90.1.1 (A:1-235) Uroporphyrin-III C-methyltransferase
(SUMT, UROM, CobA) {Thermus thermophilus [TaxId: 274]}
Length = 235
Score = 27.2 bits (59), Expect = 1.4
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 90 AVGIARVGSETQHIVATSLSDMTETNMGKPLHSLII 125
+ARVG + + + D+ G P +L++
Sbjct: 182 LALLARVGWPGEAVRLGRVEDLPGLGEGLPSPALLV 217
>d1va0a1 c.90.1.1 (A:2-226) Hypothetical protein TTHA0667 {Thermus
thermophilus [TaxId: 274]}
Length = 225
Score = 26.9 bits (58), Expect = 1.4
Identities = 7/43 (16%), Positives = 16/43 (37%)
Query: 83 GLSTADLAVGIARVGSETQHIVATSLSDMTETNMGKPLHSLII 125
G + + + R + + V L ++ E + +L I
Sbjct: 175 GRDPREPTLFVERASTPKERRVHARLEEVAEGKVEVRPPALWI 217
>d1bdfa2 d.181.1.1 (A:53-178) RNA polymerase alpha subunit
{Escherichia coli [TaxId: 562]}
Length = 126
Score = 25.7 bits (56), Expect = 2.7
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 151 AVEIRDVVMSKLHEYNDIKDATQIVIGTLANLQQVTVRKLHED 193
VEI V LHEY+ + + ++ L NL+ + VR +D
Sbjct: 6 EVEIDGV----LHEYSTKEGVQEDILEILLNLKGLAVRVQGKD 44
>d1u7na_ c.77.1.4 (A:) Fatty acid/phospholipid synthesis protein
PlsX {Enterococcus faecalis [TaxId: 1351]}
Length = 329
Score = 25.7 bits (56), Expect = 4.0
Identities = 8/48 (16%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 120 LHSLIISDESKIKDLLEKEKLIDEELAHLEQAVEIRDVVMSKLHEYND 167
+ + E++IK + EK I + H ++ + D + +
Sbjct: 31 IEFQLYGKEAEIKKYITDEKNI--TIIHTDEKIASDDEPVKAIRRKKT 76
>d1smya2 d.181.1.1 (A:50-172) RNA polymerase alpha subunit {Thermus
thermophilus [TaxId: 274]}
Length = 123
Score = 24.5 bits (53), Expect = 5.4
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 151 AVEIRDVVMSKLHEYNDIKDATQIVIGTLANLQQVTVRKLHEDF 194
+V I DV LHE++ I + V+ + NL+++ VR L+
Sbjct: 6 SVYIEDV----LHEFSTIPGVKEDVVEIILNLKELVVRFLNPSL 45
>gi|226355464|ref|YP_002785204.1|(72-143:144) putative 50S ribosomal
protein L11 [Deinococcus deserti VCD115]
gi|226317454|gb|ACO45450.1| putative 50S ribosomal
protein L11 [Deinococcus deserti VCD115] E=8e-31
s/c=1.88 id=89% cov=101%
Length = 72
Score = 23.8 bits (52), Expect = 5.4
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 147 HLEQAVEIRDVVMSKLHEYNDIKDATQIVIGT 178
+ EQ +EI M L+ ++ A V GT
Sbjct: 29 NWEQVLEIAKTKMPDLN-AGSLEAAANTVAGT 59
>d3cjrb1 a.4.7.1 (B:71-137) Ribosomal protein L11, C-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 67
Score = 23.8 bits (52), Expect = 5.7
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 147 HLEQAVEIRDVVMSKLHEYNDIKDATQIVIGT 178
EQ +EI M L D++ A +++ G+
Sbjct: 30 TWEQVLEIAKQKMPDL-NTTDLEAAARMIAGS 60
>d1mmsa1 a.4.7.1 (A:71-140) Ribosomal protein L11, C-terminal domain
{Thermotoga maritima [TaxId: 2336]}
Length = 70
Score = 23.8 bits (52), Expect = 5.8
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 147 HLEQAVEIRDVVMSKLHEYNDIKDATQIVIGT 178
+Q EI M L+ N ++ A +I+ GT
Sbjct: 31 TRKQIEEIAKTKMPDLN-ANSLEAAMKIIEGT 61
>d1vqoi1 a.4.7.1 (I:71-140) Ribosomal protein L11, C-terminal domain
{Archaeon Haloarcula marismortui [TaxId: 2238]}
Length = 70
Score = 23.8 bits (52), Expect = 6.0
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 148 LEQAVEIRDVVMSKLHEYNDIKDATQIVIGT 178
++Q +I + L D+ +A + V+GT
Sbjct: 32 VDQVKQIAEQKHPDL-LSYDLTNAAKEVVGT 61
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.131 0.364
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 696,032
Number of extensions: 29905
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 20
Length of query: 201
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 120
Effective length of database: 1,295,466
Effective search space: 155455920
Effective search space used: 155455920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.4 bits)