BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11152
(112 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ELB|A Chain A, Human Ctp: Phosphoethanolamine Cytidylyltransferase In
Complex With Cmp
Length = 341
Score = 148 bits (374), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 65/83 (78%), Positives = 74/83 (89%)
Query: 15 YDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVV 74
YD VH+GH+N LRQA+ G+YL+VGVHTDEEI+KHKGPPVFTQ+ERYK V+ IKWVDEVV
Sbjct: 16 YDXVHYGHSNQLRQARAXGDYLIVGVHTDEEIAKHKGPPVFTQEERYKXVQAIKWVDEVV 75
Query: 75 EGAPYVTTLETLDAYDCDFCVHG 97
APYVTTLETLD Y+CDFCVHG
Sbjct: 76 PAAPYVTTLETLDKYNCDFCVHG 98
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 15 YDMVHFGHANNLRQAKELGN--YLVVGVHTDEEISKHKGP--PVFTQQERYKMVRGIKWV 70
+D+ H GH + L + L Y++ G+H D+E++ +KG P+ ER V ++V
Sbjct: 207 FDLFHIGHVDFLEKVHRLAERPYIIAGLHFDQEVNHYKGKNYPIXNLHERTLSVLACRYV 266
Query: 71 DEVVEGAPYVTTLETLDAYDCDFCVHG 97
EVV GAPY T E L + D HG
Sbjct: 267 SEVVIGAPYAVTAELLSHFKVDLVCHG 293
>pdb|3HL4|A Chain A, Crystal Structure Of A Mammalian Ctp:phosphocholine
Cytidylyltransferase With Cdp-Choline
pdb|3HL4|B Chain B, Crystal Structure Of A Mammalian Ctp:phosphocholine
Cytidylyltransferase With Cdp-Choline
Length = 236
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 15 YDMVHFGHANNLRQAKEL--GNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDE 72
+D+ H GHA L QAK L YL+VGV +DE KG V + ERY V+ ++VDE
Sbjct: 85 FDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAVQHCRYVDE 144
Query: 73 VVEGAPYVTTLETLDAYDCDFCVH 96
VV AP+ T E L + DF H
Sbjct: 145 VVRNAPWTLTPEFLAEHRIDFVAH 168
>pdb|2B7L|A Chain A, Crystal Structure Of Ctp:glycerol-3-Phosphate
Cytidylyltransferase From Staphylococcus Aureus
pdb|2B7L|B Chain B, Crystal Structure Of Ctp:glycerol-3-Phosphate
Cytidylyltransferase From Staphylococcus Aureus
pdb|2B7L|C Chain C, Crystal Structure Of Ctp:glycerol-3-Phosphate
Cytidylyltransferase From Staphylococcus Aureus
pdb|2B7L|D Chain D, Crystal Structure Of Ctp:glycerol-3-Phosphate
Cytidylyltransferase From Staphylococcus Aureus
Length = 132
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 14 NYDMVHFGHANNLRQAKELGNYLVVGVHTDE-EISKHKGPPVFTQQERYKMVRGIKWVDE 72
YD++H+GH LR+A+E+G+YL+V + TDE KHK + ++R M+ I++VD
Sbjct: 9 TYDLLHYGHIELLRRAREMGDYLIVALSTDEFNQIKHK-KSYYDYEQRKMMLESIRYVDL 67
Query: 73 VVEGAPYVTTLETLDAYDCDFCVHG 97
V+ + + ++ +D D V G
Sbjct: 68 VIPEKGWGQKEDDVEKFDVDVFVMG 92
>pdb|1COZ|A Chain A, Ctp:glycerol-3-Phosphate Cytidylyltransferase From
Bacillus Subtilis
pdb|1COZ|B Chain B, Ctp:glycerol-3-Phosphate Cytidylyltransferase From
Bacillus Subtilis
pdb|1N1D|A Chain A, Glycerol-3-phosphate Cytidylyltransferase Complexed With
Cdp-glycerol
pdb|1N1D|B Chain B, Glycerol-3-phosphate Cytidylyltransferase Complexed With
Cdp-glycerol
pdb|1N1D|C Chain C, Glycerol-3-phosphate Cytidylyltransferase Complexed With
Cdp-glycerol
pdb|1N1D|D Chain D, Glycerol-3-phosphate Cytidylyltransferase Complexed With
Cdp-glycerol
Length = 129
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 47/84 (55%)
Query: 14 NYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEV 73
+D++H+GH L +AK+LG+YLVV + TDE + + + + R ++ I++VDEV
Sbjct: 9 TFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYEHRKLILETIRYVDEV 68
Query: 74 VEGAPYVTTLETLDAYDCDFCVHG 97
+ + + + ++ D V G
Sbjct: 69 IPEKNWEQKKQDIIDHNIDVFVMG 92
>pdb|3GLV|A Chain A, Crystal Structure Of The Lipopolysaccharide Core
Biosynthesis Protein From Thermoplasma Volcanium Gss1
pdb|3GLV|B Chain B, Crystal Structure Of The Lipopolysaccharide Core
Biosynthesis Protein From Thermoplasma Volcanium Gss1
Length = 143
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 4 LNLLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKM 63
+ ++AT + +D++H GH + L+++K+LG+ LVV V D + P+F + R +
Sbjct: 3 IRVMATGV---FDILHLGHIHYLKESKKLGDELVVVVARDSTARNNGKIPIFDENSRLAL 59
Query: 64 VRGIKWVDEVVEG 76
+ +K VD + G
Sbjct: 60 ISELKVVDRAILG 72
>pdb|2EED|A Chain A, Solution Structure Of The 24th Filamin Domain From Human
Filamin-B
Length = 101
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 29 AKELGNYLVVGVHTD----EEIS-KHKGPP----VFTQQERYKMVRGIKWVDEVVEGAPY 79
+K N L++GVH EE+S KH G + +ER V +KW +E + G+P+
Sbjct: 37 SKAGSNMLLIGVHGPTTPCEEVSMKHVGNQQYNVTYVVKERGDYVLAVKWGEEHIPGSPF 96
Query: 80 VTTL 83
T+
Sbjct: 97 HVTV 100
>pdb|1V05|A Chain A, Dimerization Of Human Filamin C: Crystal Structure Of
The Domain 24
Length = 96
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 9/60 (15%)
Query: 29 AKELGNYLVVGVH-----TDEEISKHKGPPVF----TQQERYKMVRGIKWVDEVVEGAPY 79
+K N ++VGVH +E KH G V+ T +E+ + +KW DE V G+P+
Sbjct: 32 SKAGTNMMMVGVHGPKTPCEEVYVKHMGNRVYNVTYTVKEKGDYILIVKWGDESVPGSPF 91
>pdb|3PXU|A Chain A, Crystal Structure Of Phosphopantetheine
Adenylyltransferase From Burkholderia Pseudomallei
Bound To Dephospho-Coenzyme A
Length = 170
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 14 NYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKM 63
+D + GH + +R+A + + LVVGV D K P F+ +ER K+
Sbjct: 13 TFDPLTRGHEDLVRRASSIFDTLVVGV-ADSRAKK----PFFSLEERLKI 57
>pdb|3K9W|A Chain A, Crystal Structure Of Phosphopantetheine
Adenylyltransferase From Burkholderia Pseudomallei With
Hydrolyzed 3'-Dephospho Coenzyme A
Length = 187
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 14 NYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKM 63
+D + GH + +R+A + + LVVGV D K P F+ +ER K+
Sbjct: 30 TFDPLTRGHEDLVRRASSIFDTLVVGV-ADSRAKK----PFFSLEERLKI 74
>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
pdb|3K5S|B Chain B, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
Length = 217
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 54 VFTQQERYKMVRGIKWVDEVVEGAPYVTTLETLDAYDCD 92
V Q + M + +V V+EG+P TT+ + A+D D
Sbjct: 97 VIDQNDNRPMFKEGPYVGHVMEGSPTGTTVMRMTAFDAD 135
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 44 EEISKHKGPPVFTQQERYKMVRGIKWVDEVVEGAPYVTTLETLDAYD 90
++I + K ++ +++ +G KW+ + GA T L L+AY+
Sbjct: 25 DQIGRXKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYE 71
>pdb|1VLW|A Chain A, Crystal Structure Of 2-Dehydro-3-Deoxyphosphogluconate
Aldolase4- Hydroxy-2-Oxoglutarate Aldolase (Tm0066) From
Thermotoga Maritima At 2.30 A Resolution
pdb|1VLW|B Chain B, Crystal Structure Of 2-Dehydro-3-Deoxyphosphogluconate
Aldolase4- Hydroxy-2-Oxoglutarate Aldolase (Tm0066) From
Thermotoga Maritima At 2.30 A Resolution
pdb|1VLW|C Chain C, Crystal Structure Of 2-Dehydro-3-Deoxyphosphogluconate
Aldolase4- Hydroxy-2-Oxoglutarate Aldolase (Tm0066) From
Thermotoga Maritima At 2.30 A Resolution
Length = 217
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 27 RQAKELGNYLVVGVHTDEEIS---KHKG----PPVFTQQERYKMVR 65
R+A E G +V H DEEIS K KG P V T E K ++
Sbjct: 89 RKAVESGAEFIVSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMK 134
>pdb|1WA3|A Chain A, Mechanism Of The Class I Kdpg Aldolase
pdb|1WA3|B Chain B, Mechanism Of The Class I Kdpg Aldolase
pdb|1WA3|C Chain C, Mechanism Of The Class I Kdpg Aldolase
pdb|1WA3|D Chain D, Mechanism Of The Class I Kdpg Aldolase
pdb|1WA3|E Chain E, Mechanism Of The Class I Kdpg Aldolase
pdb|1WA3|F Chain F, Mechanism Of The Class I Kdpg Aldolase
Length = 205
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 27 RQAKELGNYLVVGVHTDEEIS---KHKG----PPVFTQQERYKMVR 65
R+A E G +V H DEEIS K KG P V T E K ++
Sbjct: 77 RKAVESGAEFIVSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMK 122
>pdb|1W81|A Chain A, Crystal Structure Of Apical Membrane Antigen 1 From
Plasmodium Vivax
pdb|1W8K|A Chain A, Crystal Structure Of Apical Membrane Antigen 1 From
Plasmodium Vivax
Length = 447
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 69 WVDEVVEGAPYVTTLETLDAYDCDFCVHG 97
WVD E PYV +E D +C+ V G
Sbjct: 220 WVDGNCEEIPYVKEVEAEDLRECNRIVFG 248
>pdb|2J4W|D Chain D, Structure Of A Plasmodium Vivax Apical Membrane Antigen 1-
Fab F8.12.19 Complex
Length = 445
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 69 WVDEVVEGAPYVTTLETLDAYDCDFCVHG 97
WVD E PYV +E D +C+ V G
Sbjct: 218 WVDGNCEEIPYVKEVEAEDLRECNRIVFG 246
>pdb|3K5R|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
pdb|3K5R|B Chain B, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
Length = 218
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 54 VFTQQERYKMVRGIKWVDEVVEGAPYVTTLETLDAYDCD 92
V Q + + R ++ V+EG+P TT+ + A+D D
Sbjct: 98 VIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDAD 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,996,739
Number of Sequences: 62578
Number of extensions: 106888
Number of successful extensions: 263
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 249
Number of HSP's gapped (non-prelim): 19
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)