Query psy11152
Match_columns 112
No_of_seqs 121 out of 1083
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 19:20:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11152.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11152hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02172 RfaE_N N-terminal doma 100.0 1.8E-28 4E-33 169.7 12.7 101 4-105 2-102 (144)
2 TIGR02199 rfaE_dom_II rfaE bif 100.0 4.9E-28 1.1E-32 167.6 12.0 102 4-106 9-112 (144)
3 cd02174 CCT CTP:phosphocholine 99.9 1.3E-26 2.8E-31 161.7 12.6 99 6-104 2-102 (150)
4 cd02173 ECT CTP:phosphoethanol 99.9 1.1E-25 2.4E-30 157.3 12.2 98 6-103 2-101 (152)
5 PTZ00308 ethanolamine-phosphat 99.9 7.4E-26 1.6E-30 176.1 12.4 100 5-104 10-109 (353)
6 cd02170 cytidylyltransferase c 99.9 1.8E-25 4E-30 152.4 12.0 98 6-104 1-98 (136)
7 TIGR01518 g3p_cytidyltrns glyc 99.9 1.6E-25 3.5E-30 151.2 10.5 93 9-101 1-93 (125)
8 COG0615 TagD Cytidylyltransfer 99.9 2.6E-25 5.6E-30 152.9 10.0 98 7-104 2-100 (140)
9 cd02171 G3P_Cytidylyltransfera 99.9 5.6E-25 1.2E-29 148.9 11.5 96 6-101 1-96 (129)
10 PF06574 FAD_syn: FAD syntheta 99.9 1.6E-25 3.4E-30 157.2 7.3 101 4-105 3-121 (157)
11 PTZ00308 ethanolamine-phosphat 99.9 1.1E-23 2.3E-28 164.0 12.3 101 6-106 192-294 (353)
12 PLN02406 ethanolamine-phosphat 99.9 1.9E-23 4.2E-28 165.0 12.0 98 4-101 249-348 (418)
13 PLN02413 choline-phosphate cyt 99.9 4E-23 8.7E-28 155.8 11.4 93 6-98 27-121 (294)
14 PRK07143 hypothetical protein; 99.9 6.1E-23 1.3E-27 155.5 12.2 99 5-104 14-121 (279)
15 cd02064 FAD_synthetase_N FAD s 99.9 2.2E-23 4.8E-28 148.6 9.2 97 8-105 1-114 (180)
16 PLN02406 ethanolamine-phosphat 99.9 6.4E-23 1.4E-27 162.0 11.9 99 5-103 52-154 (418)
17 KOG2803|consensus 99.9 1.6E-23 3.4E-28 159.2 7.8 95 7-101 9-103 (358)
18 PRK05627 bifunctional riboflav 99.9 2.6E-22 5.6E-27 153.7 11.2 96 8-104 15-128 (305)
19 TIGR00083 ribF riboflavin kina 99.9 2.5E-22 5.5E-27 152.7 9.0 96 9-105 1-113 (288)
20 COG0196 RibF FAD synthase [Coe 99.9 1.1E-21 2.4E-26 150.0 9.9 99 6-105 15-130 (304)
21 PRK11316 bifunctional heptose 99.9 5.5E-21 1.2E-25 152.3 12.2 101 5-106 339-441 (473)
22 COG2870 RfaE ADP-heptose synth 99.8 4.6E-20 1E-24 144.6 9.8 102 6-108 332-435 (467)
23 KOG2803|consensus 99.8 1.6E-19 3.5E-24 137.4 9.5 101 6-106 198-302 (358)
24 KOG2804|consensus 99.8 2.9E-19 6.4E-24 135.4 7.3 99 6-105 63-163 (348)
25 cd02039 cytidylyltransferase_l 99.8 7.2E-18 1.6E-22 113.8 10.4 96 8-104 1-106 (143)
26 PRK00168 coaD phosphopantethei 99.7 2.2E-16 4.8E-21 110.8 11.0 87 6-97 1-88 (159)
27 TIGR00125 cyt_tran_rel cytidyl 99.7 1E-16 2.2E-21 96.4 7.0 64 8-71 1-64 (66)
28 COG0669 CoaD Phosphopantethein 99.7 2.7E-16 5.8E-21 109.7 9.7 85 6-97 2-89 (159)
29 PRK00777 phosphopantetheine ad 99.7 7.2E-17 1.6E-21 112.9 6.5 89 7-101 2-99 (153)
30 PRK13964 coaD phosphopantethei 99.7 2E-15 4.3E-20 104.4 10.7 85 7-97 2-89 (140)
31 cd02163 PPAT Phosphopantethein 99.6 5.1E-15 1.1E-19 103.3 10.9 85 8-97 1-86 (153)
32 cd02169 Citrate_lyase_ligase C 99.6 2.5E-14 5.5E-19 109.4 12.3 93 6-105 114-237 (297)
33 PLN02388 phosphopantetheine ad 99.6 4.8E-15 1.1E-19 105.9 7.1 62 6-67 19-82 (177)
34 PRK01170 phosphopantetheine ad 99.6 1.3E-14 2.8E-19 111.9 8.1 92 8-103 2-98 (322)
35 TIGR01510 coaD_prev_kdtB pante 99.6 6.4E-14 1.4E-18 97.9 10.4 85 8-97 1-86 (155)
36 cd02166 NMNAT_Archaea Nicotina 99.5 1.1E-13 2.4E-18 97.5 10.2 91 9-101 2-104 (163)
37 TIGR01527 arch_NMN_Atrans nico 99.5 1.1E-13 2.4E-18 97.9 10.1 89 8-99 1-100 (165)
38 smart00764 Citrate_ly_lig Citr 99.5 1.6E-13 3.4E-18 98.5 10.9 87 11-104 4-121 (182)
39 PRK13670 hypothetical protein; 99.5 8E-14 1.7E-18 110.0 9.9 91 6-99 1-103 (388)
40 cd02164 PPAT_CoAS phosphopante 99.5 5.4E-14 1.2E-18 97.4 6.4 60 8-67 1-62 (143)
41 PF01467 CTP_transf_2: Cytidyl 99.5 1.1E-13 2.4E-18 93.8 6.4 62 10-72 1-63 (157)
42 PRK05379 bifunctional nicotina 99.4 6.5E-12 1.4E-16 97.5 12.3 99 1-101 1-115 (340)
43 cd00560 PanC Pantoate-beta-ala 99.4 1.2E-12 2.5E-17 99.4 7.4 85 8-98 26-120 (277)
44 PRK13671 hypothetical protein; 99.4 6.4E-12 1.4E-16 96.2 10.9 88 9-100 3-103 (298)
45 PRK00071 nadD nicotinic acid m 99.4 4E-12 8.7E-17 92.0 8.4 91 6-99 4-110 (203)
46 cd02167 NMNAT_NadR Nicotinamid 99.3 2.8E-12 6.1E-17 90.0 7.0 94 8-103 1-113 (158)
47 PRK00380 panC pantoate--beta-a 99.3 1.8E-12 4E-17 98.5 5.3 86 9-98 27-119 (281)
48 COG1019 Predicted nucleotidylt 99.3 3.2E-12 6.9E-17 88.9 5.3 62 5-66 4-65 (158)
49 PRK01153 nicotinamide-nucleoti 99.3 4.3E-11 9.4E-16 85.3 10.8 90 8-99 2-103 (174)
50 cd02156 nt_trans nucleotidyl t 99.3 5.4E-12 1.2E-16 82.5 5.7 58 8-67 1-58 (105)
51 PRK08099 bifunctional DNA-bind 99.3 3.2E-11 7E-16 95.5 10.3 95 7-101 53-170 (399)
52 cd02165 NMNAT Nicotinamide/nic 99.3 2.4E-11 5.1E-16 87.2 7.9 90 8-100 1-105 (192)
53 cd02168 NMNAT_Nudix Nicotinami 99.3 1.4E-11 3.1E-16 88.2 6.8 91 9-101 2-110 (181)
54 COG1057 NadD Nicotinic acid mo 99.2 3.8E-11 8.3E-16 87.2 7.6 93 5-100 2-111 (197)
55 PRK13793 nicotinamide-nucleoti 99.2 6.9E-11 1.5E-15 85.8 7.6 59 7-67 5-63 (196)
56 TIGR01526 nadR_NMN_Atrans nico 99.2 8.7E-11 1.9E-15 90.7 7.6 64 7-72 2-66 (325)
57 TIGR00124 cit_ly_ligase [citra 99.1 4.3E-10 9.3E-15 87.3 10.1 62 6-74 139-201 (332)
58 PRK06973 nicotinic acid mononu 99.1 3.6E-10 7.8E-15 84.4 9.2 57 6-66 22-80 (243)
59 TIGR00482 nicotinate (nicotina 99.1 2.4E-10 5.2E-15 82.2 6.7 63 10-75 1-67 (193)
60 PRK07152 nadD putative nicotin 99.1 5.6E-10 1.2E-14 86.6 8.0 92 6-100 1-108 (342)
61 COG1056 NadR Nicotinamide mono 99.0 5.3E-10 1.1E-14 79.6 6.3 60 5-66 2-61 (172)
62 PRK08887 nicotinic acid mononu 99.0 1.8E-09 4E-14 76.8 7.0 56 7-67 3-58 (174)
63 PF05636 HIGH_NTase1: HIGH Nuc 98.9 4.4E-09 9.5E-14 83.2 6.7 92 6-100 1-104 (388)
64 TIGR00018 panC pantoate--beta- 98.8 1E-08 2.2E-13 78.1 7.4 64 9-76 27-93 (282)
65 PLN02660 pantoate--beta-alanin 98.8 1.3E-08 2.8E-13 77.6 7.3 65 8-76 25-92 (284)
66 cd09286 NMNAT_Eukarya Nicotina 98.8 2.2E-08 4.8E-13 73.9 7.6 66 9-75 3-74 (225)
67 PLN02945 nicotinamide-nucleoti 98.6 1.5E-07 3.3E-12 69.8 7.3 65 8-72 24-92 (236)
68 KOG3351|consensus 98.5 5.1E-08 1.1E-12 73.0 3.0 61 7-67 143-205 (293)
69 COG1323 Predicted nucleotidylt 98.5 4.8E-07 1E-11 71.0 7.6 90 8-100 3-104 (358)
70 PF08218 Citrate_ly_lig: Citra 98.1 4.4E-05 9.5E-10 54.8 9.2 56 13-75 6-62 (182)
71 TIGR00339 sopT ATP sulphurylas 97.9 0.00019 4.1E-09 57.0 10.2 92 7-103 184-292 (383)
72 COG3053 CitC Citrate lyase syn 97.7 0.00025 5.5E-09 54.6 8.7 65 4-75 143-208 (352)
73 PRK13477 bifunctional pantoate 97.5 0.00023 4.9E-09 58.5 6.2 68 8-76 21-91 (512)
74 PF02569 Pantoate_ligase: Pant 97.5 0.00045 9.8E-09 52.8 7.2 62 13-75 28-92 (280)
75 COG0414 PanC Panthothenate syn 97.2 0.0024 5.2E-08 48.7 7.6 62 13-75 28-92 (285)
76 KOG3042|consensus 96.7 0.0036 7.8E-08 46.5 5.1 61 14-75 31-94 (283)
77 COG2046 MET3 ATP sulfurylase ( 96.7 0.031 6.8E-07 44.4 10.3 93 5-102 182-289 (397)
78 cd00517 ATPS ATP-sulfurylase. 96.5 0.055 1.2E-06 42.7 10.6 92 7-103 157-265 (353)
79 PRK04149 sat sulfate adenylylt 96.4 0.048 1E-06 43.6 9.7 90 7-101 187-291 (391)
80 PF01747 ATP-sulfurylase: ATP- 95.8 0.058 1.3E-06 39.8 7.4 92 7-103 21-128 (215)
81 PRK05537 bifunctional sulfate 93.9 0.67 1.4E-05 38.7 9.5 95 7-105 187-295 (568)
82 KOG3199|consensus 93.6 0.5 1.1E-05 35.1 7.3 70 10-80 12-86 (234)
83 PLN02341 pfkB-type carbohydrat 79.5 0.54 1.2E-05 38.2 -0.2 30 4-33 412-441 (470)
84 cd01715 ETF_alpha The electron 69.9 33 0.00072 23.6 8.2 73 18-103 13-96 (168)
85 cd01985 ETF The electron trans 59.2 57 0.0012 22.6 8.1 80 18-110 17-111 (181)
86 PRK00032 Maf-like protein; Rev 50.1 46 0.001 23.9 4.9 42 58-100 11-71 (190)
87 COG2910 Putative NADH-flavin r 49.9 1E+02 0.0022 22.8 6.7 78 19-98 11-105 (211)
88 COG1533 SplB DNA repair photol 48.8 64 0.0014 24.9 5.7 59 20-78 129-191 (297)
89 PRK04694 Maf-like protein; Rev 47.0 49 0.0011 23.8 4.6 43 58-101 9-73 (190)
90 PRK14364 Maf-like protein; Pro 46.3 56 0.0012 23.3 4.8 42 58-100 6-65 (181)
91 COG1184 GCD2 Translation initi 45.5 1.5E+02 0.0032 23.2 8.0 30 7-40 121-150 (301)
92 PF09587 PGA_cap: Bacterial ca 45.4 80 0.0017 23.1 5.7 51 21-75 169-222 (250)
93 COG0424 Maf Nucleotide-binding 45.2 60 0.0013 23.7 4.8 42 58-100 12-72 (193)
94 PRK04425 Maf-like protein; Rev 42.6 68 0.0015 23.2 4.8 43 58-101 14-74 (196)
95 PRK04056 Maf-like protein; Rev 41.8 76 0.0017 22.6 4.9 42 58-100 9-69 (180)
96 PRK00648 Maf-like protein; Rev 41.6 74 0.0016 22.9 4.8 42 58-100 12-73 (191)
97 TIGR00172 maf MAF protein. Thi 40.5 77 0.0017 22.6 4.8 43 57-100 11-71 (183)
98 COG2355 Zn-dependent dipeptida 39.7 1.3E+02 0.0029 23.5 6.2 49 58-106 205-268 (313)
99 PRK00884 Maf-like protein; Rev 39.2 73 0.0016 23.0 4.5 42 58-100 11-70 (194)
100 PRK14367 Maf-like protein; Pro 39.2 83 0.0018 22.9 4.8 28 58-86 11-45 (202)
101 COG0352 ThiE Thiamine monophos 39.0 40 0.00086 24.8 3.1 27 16-42 83-111 (211)
102 PRK14363 Maf-like protein; Pro 38.8 85 0.0018 22.9 4.8 42 58-100 10-69 (204)
103 cd08059 MPN_prok_mb Mpr1p, Pad 38.7 97 0.0021 19.2 5.2 44 26-76 48-91 (101)
104 PRK05198 2-dehydro-3-deoxyphos 38.7 26 0.00056 26.8 2.2 55 14-68 187-258 (264)
105 PRK00234 Maf-like protein; Rev 38.5 81 0.0017 22.7 4.6 42 58-100 11-70 (192)
106 PF01012 ETF: Electron transfe 38.1 50 0.0011 22.4 3.4 73 22-105 17-105 (164)
107 PRK02141 Maf-like protein; Rev 38.0 83 0.0018 23.0 4.7 43 57-100 17-80 (207)
108 PRK14368 Maf-like protein; Pro 37.7 91 0.002 22.5 4.8 42 58-100 14-73 (193)
109 PF13038 DUF3899: Domain of un 36.0 13 0.00028 23.3 0.1 23 11-33 23-45 (92)
110 cd00555 Maf Nucleotide binding 35.6 1.1E+02 0.0024 21.7 4.9 42 58-100 8-68 (180)
111 PRK01526 Maf-like protein; Rev 34.9 84 0.0018 22.9 4.3 43 57-100 16-78 (205)
112 COG0826 Collagenase and relate 34.7 1.9E+02 0.0041 22.8 6.5 17 61-78 85-101 (347)
113 COG0421 SpeE Spermidine syntha 34.6 2.1E+02 0.0045 21.9 7.3 88 3-96 74-187 (282)
114 PRK14361 Maf-like protein; Pro 34.4 1E+02 0.0022 22.1 4.6 42 58-100 8-66 (187)
115 PF10932 DUF2783: Protein of u 33.8 18 0.00039 21.5 0.5 16 19-34 43-58 (60)
116 cd08071 MPN_DUF2466 Mov34/MPN/ 33.7 96 0.0021 20.2 4.1 38 8-45 34-71 (113)
117 PF07355 GRDB: Glycine/sarcosi 32.2 47 0.001 26.4 2.7 20 85-104 75-94 (349)
118 PRK13030 2-oxoacid ferredoxin 31.9 3.4E+02 0.0073 25.3 8.2 71 5-76 486-558 (1159)
119 PF01232 Mannitol_dh: Mannitol 31.9 20 0.00044 24.5 0.6 26 18-43 11-38 (151)
120 PRK14362 Maf-like protein; Pro 31.2 1.2E+02 0.0026 22.1 4.6 43 57-100 20-81 (207)
121 PF11978 MVP_shoulder: Shoulde 30.4 15 0.00032 24.8 -0.3 22 11-32 65-86 (118)
122 PRK00148 Maf-like protein; Rev 29.6 1.4E+02 0.0031 21.4 4.7 42 58-100 10-69 (194)
123 PRK10490 sensor protein KdpD; 29.1 1.3E+02 0.0027 26.7 5.1 77 22-100 263-346 (895)
124 PRK15452 putative protease; Pr 28.8 2E+02 0.0044 23.5 5.9 23 84-106 128-150 (443)
125 PRK09193 indolepyruvate ferred 28.7 4E+02 0.0086 24.9 8.1 71 5-76 499-571 (1165)
126 PLN03033 2-dehydro-3-deoxyphos 28.6 36 0.00078 26.4 1.5 59 14-72 193-273 (290)
127 cd03066 PDI_b_Calsequestrin_mi 28.3 1.1E+02 0.0024 19.1 3.6 38 8-45 20-58 (102)
128 PRK02478 Maf-like protein; Rev 28.2 1.6E+02 0.0034 21.3 4.7 17 58-75 12-28 (199)
129 PRK14366 Maf-like protein; Pro 27.7 1.5E+02 0.0031 21.5 4.5 43 57-100 13-74 (195)
130 PF14781 BBS2_N: Ciliary BBSom 27.0 26 0.00056 24.2 0.5 24 82-108 84-109 (136)
131 PRK13029 2-oxoacid ferredoxin 26.5 5.4E+02 0.012 24.1 8.6 72 5-77 513-586 (1186)
132 TIGR00608 radc DNA repair prot 26.5 93 0.002 22.9 3.3 39 8-46 134-172 (218)
133 PRK08334 translation initiatio 26.4 3.4E+02 0.0073 21.7 7.8 64 23-100 181-248 (356)
134 PRK06371 translation initiatio 25.8 3.3E+02 0.0072 21.4 8.2 34 7-40 138-175 (329)
135 PRK08335 translation initiatio 25.6 3.1E+02 0.0067 21.0 8.1 25 8-36 112-136 (275)
136 PHA02540 61 DNA primase; Provi 25.3 3.4E+02 0.0073 21.5 6.4 71 6-91 223-308 (337)
137 TIGR01917 gly_red_sel_B glycin 25.1 70 0.0015 26.2 2.6 20 85-104 71-90 (431)
138 PRK00078 Maf-like protein; Rev 24.9 2E+02 0.0044 20.6 4.8 17 58-75 10-26 (192)
139 PF00107 ADH_zinc_N: Zinc-bind 24.8 1.6E+02 0.0036 18.4 4.0 17 58-75 24-40 (130)
140 TIGR01918 various_sel_PB selen 24.7 72 0.0016 26.1 2.6 20 85-104 71-90 (431)
141 PRK12457 2-dehydro-3-deoxyphos 23.9 1.6E+02 0.0035 22.8 4.3 57 14-70 195-268 (281)
142 PF02129 Peptidase_S15: X-Pro 23.4 1.9E+02 0.004 21.2 4.5 37 6-42 229-269 (272)
143 PRK12569 hypothetical protein; 23.0 65 0.0014 24.4 2.0 51 17-67 40-95 (245)
144 cd07381 MPP_CapA CapA and rela 22.7 3E+02 0.0065 19.8 5.7 19 24-42 166-184 (239)
145 cd01316 CAD_DHOase The eukaryo 22.6 2.2E+02 0.0049 22.1 5.0 52 23-74 162-222 (344)
146 PRK01839 Maf-like protein; Rev 22.2 2.4E+02 0.0052 20.6 4.8 18 57-75 18-35 (209)
147 PRK05720 mtnA methylthioribose 22.1 4E+02 0.0087 21.0 7.6 15 24-38 169-183 (344)
148 TIGR01362 KDO8P_synth 3-deoxy- 22.1 1.8E+02 0.0038 22.3 4.1 55 14-68 179-250 (258)
149 KOG1905|consensus 22.0 1.1E+02 0.0024 24.2 3.1 51 13-63 33-90 (353)
150 TIGR00512 salvage_mtnA S-methy 21.8 4E+02 0.0087 20.9 7.3 18 23-40 168-185 (331)
151 cd02803 OYE_like_FMN_family Ol 21.4 2.5E+02 0.0053 21.2 4.9 13 62-75 235-247 (327)
152 PRK01441 Maf-like protein; Rev 21.4 2.3E+02 0.0051 20.5 4.6 13 58-71 14-26 (207)
153 PRK00024 hypothetical protein; 21.3 1.4E+02 0.003 22.0 3.4 38 9-46 141-178 (224)
154 PLN02446 (5-phosphoribosyl)-5- 21.1 98 0.0021 23.6 2.6 42 59-101 95-144 (262)
155 PRK13354 tyrosyl-tRNA syntheta 20.9 3.4E+02 0.0074 21.9 5.8 17 16-32 45-61 (410)
156 KOG4175|consensus 20.7 1.5E+02 0.0032 22.3 3.4 59 9-67 98-170 (268)
157 PRK00886 2-phosphosulfolactate 20.5 1.1E+02 0.0024 22.8 2.8 41 69-109 41-89 (240)
158 smart00854 PGA_cap Bacterial c 20.4 3.4E+02 0.0074 19.6 5.6 17 26-42 166-182 (239)
159 COG0329 DapA Dihydrodipicolina 20.4 3.1E+02 0.0068 20.9 5.3 54 53-106 52-115 (299)
160 TIGR00715 precor6x_red precorr 20.0 2.8E+02 0.006 20.8 4.9 85 6-96 1-98 (256)
No 1
>cd02172 RfaE_N N-terminal domain of RfaE. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=99.96 E-value=1.8e-28 Score=169.75 Aligned_cols=101 Identities=28% Similarity=0.390 Sum_probs=90.3
Q ss_pred CCceEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhccCCCEEEEcCCCCCHH
Q psy11152 4 LNLLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVVEGAPYVTTL 83 (112)
Q Consensus 4 ~~~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~~~vd~vi~~~~~~~~~ 83 (112)
++.++|+++|+|||+|.||+++|++|++.++.++|++++++.+.+.+..+++|.+||.++++++++||.+++.+ ..+++
T Consensus 2 ~~~~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~vv~~~~d~~~~~~~~~~i~~~~eR~~~l~~lg~VD~vi~~~-~~~~~ 80 (144)
T cd02172 2 RGKTVVLCHGVFDLLHPGHVRHLQAARSLGDILVVSLTSDRYVNKGPGRPIFPEDLRAEVLAALGFVDYVVLFD-NPTAL 80 (144)
T ss_pred CCCEEEEEecccCCCCHHHHHHHHHHHHhCCeEEEEEeChHHhccCCCCCCCCHHHHHHHHHccCCccEEEECC-CCCHH
Confidence 35678999999999999999999999999999999999998765545458999999999999996699999874 46899
Q ss_pred HHHHhcCCCEEEEcCCCCCCcc
Q psy11152 84 ETLDAYDCDFCVHGALEVLVSL 105 (112)
Q Consensus 84 ~fi~~l~~~~iv~G~D~~f~~~ 105 (112)
+|+++++++++|+|+||+||..
T Consensus 81 ~fi~~l~~~~vv~G~d~~fg~~ 102 (144)
T cd02172 81 EIIDALQPNIYVKGGDYENPEN 102 (144)
T ss_pred HHHHHhCCCEEEECCCcccCcc
Confidence 9999999999999999999864
No 2
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.96 E-value=4.9e-28 Score=167.55 Aligned_cols=102 Identities=28% Similarity=0.386 Sum_probs=89.9
Q ss_pred CCceEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCC--CCCcCHHHHHHHHhhccCCCEEEEcCCCCC
Q psy11152 4 LNLLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKG--PPVFTQQERYKMVRGIKWVDEVVEGAPYVT 81 (112)
Q Consensus 4 ~~~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~--~~i~s~~eR~~~l~~~~~vd~vi~~~~~~~ 81 (112)
++.++++++|+||++|.||+++|++|++.|+.++|++++|+.....++ .|+++.+||.++++++++||.+++|++ .+
T Consensus 9 ~~~~~v~~~G~FDgvH~GH~~ll~~a~~~~~~~~v~v~~d~~~~~~k~~~~~l~~~eeR~~~l~~~~~VD~vi~f~~-~~ 87 (144)
T TIGR02199 9 RGKKIVFTNGCFDILHAGHVSYLQQARALGDRLVVGVNSDASVKRLKGETRPINPEEDRAEVLAALSSVDYVVIFDE-DT 87 (144)
T ss_pred cCCCEEEEeCcccccCHHHHHHHHHHHHhCCccEEEEECCcCHHHhCCCCCCcCCHHHHHHHHHhcCCCCEEEECCC-CC
Confidence 346899999999999999999999999999999999999987542232 479999999999999977999999864 78
Q ss_pred HHHHHHhcCCCEEEEcCCCCCCccc
Q psy11152 82 TLETLDAYDCDFCVHGALEVLVSLE 106 (112)
Q Consensus 82 ~~~fi~~l~~~~iv~G~D~~f~~~~ 106 (112)
+++|+++++++++|+|+||+|....
T Consensus 88 ~~~fi~~l~~~~vv~G~d~~~~~~~ 112 (144)
T TIGR02199 88 PEELIGELKPDILVKGGDYKVETLV 112 (144)
T ss_pred HHHHHHHhCCCEEEECCCCCCCcch
Confidence 9999999999999999999996543
No 3
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=99.94 E-value=1.3e-26 Score=161.67 Aligned_cols=99 Identities=61% Similarity=1.031 Sum_probs=90.6
Q ss_pred ceEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEecCcccccCCCCCCcCHHHHHHHHhhccCCCEEEEcCCCCCHH
Q psy11152 6 LLATSLQSNYDMVHFGHANNLRQAKELG--NYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVVEGAPYVTTL 83 (112)
Q Consensus 6 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~--~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~~~vd~vi~~~~~~~~~ 83 (112)
.++|++.|+||+||.||+++|++|++++ +.|+||+++|+.+...|+.|+++.+||.+++++|++||.|++.+++..+.
T Consensus 2 ~~rV~~~G~FDl~H~GHi~~L~~A~~lg~~d~LiVgV~sD~~~~~~k~~pi~~~~eR~~~l~~~~~Vd~Vi~~~~~~~~~ 81 (150)
T cd02174 2 PVRVYVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKGPPVMTEEERYEAVRHCKWVDEVVEGAPYVTTP 81 (150)
T ss_pred CeEEEEeCccCCCCHHHHHHHHHHHHhCCCCEEEEEEecCHHHhhcCCCCcCCHHHHHHHHHhcCCCCeEEECCCCCChH
Confidence 4679999999999999999999999999 99999999999876666669999999999999999999999987766788
Q ss_pred HHHHhcCCCEEEEcCCCCCCc
Q psy11152 84 ETLDAYDCDFCVHGALEVLVS 104 (112)
Q Consensus 84 ~fi~~l~~~~iv~G~D~~f~~ 104 (112)
+|+++++||++++|+||..+.
T Consensus 82 ~~i~~~~~d~vv~G~d~~~~~ 102 (150)
T cd02174 82 EFLDKYKCDYVAHGDDIYLDA 102 (150)
T ss_pred HHHHHhCCCEEEECCCCCCCC
Confidence 999999999999999998643
No 4
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=99.94 E-value=1.1e-25 Score=157.31 Aligned_cols=98 Identities=40% Similarity=0.674 Sum_probs=90.0
Q ss_pred ceEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCC--CCCcCHHHHHHHHhhccCCCEEEEcCCCCCHH
Q psy11152 6 LLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKG--PPVFTQQERYKMVRGIKWVDEVVEGAPYVTTL 83 (112)
Q Consensus 6 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~--~~i~s~~eR~~~l~~~~~vd~vi~~~~~~~~~ 83 (112)
.++|++.|+||+||.||+.+|++|+++++.|+||+++|+.++..|+ .|++|.+||.+++++|++||.|++++++..+.
T Consensus 2 ~~iv~~~G~FD~~H~GHi~~L~~A~~lgd~liVgV~~D~~~~~~K~~~~pi~~~~eR~~~v~~~~~Vd~V~v~~~~~~~~ 81 (152)
T cd02173 2 DKVVYVDGAFDLFHIGHIEFLEKARELGDYLIVGVHDDQTVNEYKGSNYPIMNLHERVLSVLACRYVDEVVIGAPYVITK 81 (152)
T ss_pred CeEEEEcCcccCCCHHHHHHHHHHHHcCCEEEEEEeCcHHHHhhcCCCCCCCCHHHHHHHHHhcCCCCEEEECCCCcchH
Confidence 4689999999999999999999999999999999999988766565 38999999999999999999999987776788
Q ss_pred HHHHhcCCCEEEEcCCCCCC
Q psy11152 84 ETLDAYDCDFCVHGALEVLV 103 (112)
Q Consensus 84 ~fi~~l~~~~iv~G~D~~f~ 103 (112)
+|+++++|+++++|.||...
T Consensus 82 ~~~~~~~~d~vv~G~d~~~~ 101 (152)
T cd02173 82 ELIEHFKIDVVVHGKTEETP 101 (152)
T ss_pred HHHHHhCCCEEEECCCCccc
Confidence 99999999999999999864
No 5
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=99.93 E-value=7.4e-26 Score=176.06 Aligned_cols=100 Identities=53% Similarity=0.919 Sum_probs=91.5
Q ss_pred CceEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhccCCCEEEEcCCCCCHHH
Q psy11152 5 NLLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVVEGAPYVTTLE 84 (112)
Q Consensus 5 ~~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~~~vd~vi~~~~~~~~~~ 84 (112)
++.+|++.|+||++|.||+++|++|++.++.|+|++++|..+.+.|++|+++.+||++++++|++||+|++..|+.++.+
T Consensus 10 ~~~~v~~~G~FD~vH~GH~~~L~qAk~~g~~Livgv~~d~~i~~~K~~pi~~~eeR~~~l~~~~~VD~Vv~~~p~~~~~~ 89 (353)
T PTZ00308 10 GTIRVWVDGCFDMLHFGHANALRQARALGDELFVGCHSDEEIMRNKGPPVMHQEERYEALRACKWVDEVVEGYPYTTRLE 89 (353)
T ss_pred CcEEEEEEeecccCCHHHHHHHHHHHHhCCEEEEEeCCHHHHhhcCCCCCCCHHHHHHHHHhcCCccEEEECCCCCchHH
Confidence 35789999999999999999999999999999999999998776677789999999999999988999998445667788
Q ss_pred HHHhcCCCEEEEcCCCCCCc
Q psy11152 85 TLDAYDCDFCVHGALEVLVS 104 (112)
Q Consensus 85 fi~~l~~~~iv~G~D~~f~~ 104 (112)
|+++++|+++++|+||+||.
T Consensus 90 fI~~l~~d~vv~GdD~~~g~ 109 (353)
T PTZ00308 90 DLERLECDFVVHGDDISVDL 109 (353)
T ss_pred HHHHhCCCEEEECCCCCCCC
Confidence 99999999999999999985
No 6
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=99.93 E-value=1.8e-25 Score=152.43 Aligned_cols=98 Identities=33% Similarity=0.569 Sum_probs=85.0
Q ss_pred ceEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhccCCCEEEEcCCCCCHHHH
Q psy11152 6 LLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVVEGAPYVTTLET 85 (112)
Q Consensus 6 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~~~vd~vi~~~~~~~~~~f 85 (112)
|++++++|+|||+|.||+.++++|++.++.+++++++++...+.++.+++|.+||.+++++|++||.+++.+++. ..+.
T Consensus 1 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~l~v~v~~~~~~~~~~~~~~~~~~eR~~~l~~~~~vd~v~~~~~~~-~~~~ 79 (136)
T cd02170 1 MKRVYAAGTFDIIHPGHIRFLEEAKKLGDYLIVGVARDETVAKIKRRPILPEEQRAEVVEALKYVDEVILGHPWS-YFKP 79 (136)
T ss_pred CeEEEEcCccCCCCHHHHHHHHHHHHhCCEEEEEECCcHHHHhcCCCCCCCHHHHHHHHHcCCCcCEEEECCCCC-HhHH
Confidence 468999999999999999999999999999999999998765545458999999999999999999999876643 3334
Q ss_pred HHhcCCCEEEEcCCCCCCc
Q psy11152 86 LDAYDCDFCVHGALEVLVS 104 (112)
Q Consensus 86 i~~l~~~~iv~G~D~~f~~ 104 (112)
+.+++++++|+|+||+||.
T Consensus 80 l~~~~~~~vv~G~d~~fg~ 98 (136)
T cd02170 80 LEELKPDVIVLGDDQKNGV 98 (136)
T ss_pred HHHHCCCEEEECCCCCCCC
Confidence 5779999999999999985
No 7
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=99.93 E-value=1.6e-25 Score=151.20 Aligned_cols=93 Identities=26% Similarity=0.424 Sum_probs=80.7
Q ss_pred EEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhccCCCEEEEcCCCCCHHHHHHh
Q psy11152 9 TSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVVEGAPYVTTLETLDA 88 (112)
Q Consensus 9 v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~~~vd~vi~~~~~~~~~~fi~~ 88 (112)
|++.|+||++|.||+++|++|++.|+.++|++++|+....++..+++|.+||.++++++++||.++.+.++....+++++
T Consensus 1 v~~~G~FDg~H~GH~~~l~~a~~~~~~~iv~v~~d~~~~~~~~~~i~~~eeR~~~l~~~~~Vd~vi~~~~~~~f~~~l~~ 80 (125)
T TIGR01518 1 VLTYGTFDLLHWGHINLLERAKQLGDYLIVALSTDEFNLQKQKKAYHSYEHRKLILETIRYVDLVIPEKSWEQKKQDIID 80 (125)
T ss_pred CEEcceeCCCCHHHHHHHHHHHHcCCEEEEEEechHHHhhcCCCCCCCHHHHHHHHHcCCCccEEecCCCccchHHHHHH
Confidence 57899999999999999999999999999999999865443444899999999999999889999877655445566789
Q ss_pred cCCCEEEEcCCCC
Q psy11152 89 YDCDFCVHGALEV 101 (112)
Q Consensus 89 l~~~~iv~G~D~~ 101 (112)
++++++++|+||.
T Consensus 81 ~~~~~vv~G~D~~ 93 (125)
T TIGR01518 81 FNIDVFVMGDDWE 93 (125)
T ss_pred cCCCEEEECCCcc
Confidence 9999999999994
No 8
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=99.93 E-value=2.6e-25 Score=152.91 Aligned_cols=98 Identities=33% Similarity=0.566 Sum_probs=88.0
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCccccc-CCCCCCcCHHHHHHHHhhccCCCEEEEcCCCCCHHHH
Q psy11152 7 LATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISK-HKGPPVFTQQERYKMVRGIKWVDEVVEGAPYVTTLET 85 (112)
Q Consensus 7 ~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~-~k~~~i~s~~eR~~~l~~~~~vd~vi~~~~~~~~~~f 85 (112)
.+|++.|+||.+|.||.+.|++|++++++++|.+.+|+...+ ++++|+++.++|++++++|++||.|++..||....++
T Consensus 2 ~rV~~~GtFDilH~GHi~~L~~Ak~lGd~liVv~a~de~~~~~~k~~pi~~~~qR~evl~s~ryVD~vi~~~p~~~~~~~ 81 (140)
T COG0615 2 KRVWADGTFDILHPGHIEFLRQAKKLGDELIVVVARDETVIKRKKRKPIMPEEQRAEVLESLRYVDEVILGAPWDIKFED 81 (140)
T ss_pred cEEEEeeEEEEechhHHHHHHHHHHhCCeEEEEEeccHHHHHhcCCCCCCCHHHHHHHHHcCcchheeeeCCccccChHH
Confidence 469999999999999999999999999988888888776654 5666999999999999999999999998888665779
Q ss_pred HHhcCCCEEEEcCCCCCCc
Q psy11152 86 LDAYDCDFCVHGALEVLVS 104 (112)
Q Consensus 86 i~~l~~~~iv~G~D~~f~~ 104 (112)
+++++||++++|+|++|..
T Consensus 82 i~~~k~Div~lG~D~~~d~ 100 (140)
T COG0615 82 IEEYKPDIVVLGDDQKFDE 100 (140)
T ss_pred HHHhCCCEEEECCCCcCCh
Confidence 9999999999999999654
No 9
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
Probab=99.93 E-value=5.6e-25 Score=148.86 Aligned_cols=96 Identities=28% Similarity=0.449 Sum_probs=79.8
Q ss_pred ceEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhccCCCEEEEcCCCCCHHHH
Q psy11152 6 LLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVVEGAPYVTTLET 85 (112)
Q Consensus 6 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~~~vd~vi~~~~~~~~~~f 85 (112)
|++++++|+|||+|.||+.+|++|++.++++++++++|+.....+..+++|.++|+++++++++||.++.+.++....+.
T Consensus 1 ~~~v~~~G~FDgvH~GH~~ll~~a~~~~~~l~v~v~~d~~~~~~~~~~~~~~~~R~~~l~~~~~vd~v~~~~~~~~f~~~ 80 (129)
T cd02171 1 MKVVITYGTFDLLHIGHLNLLERAKALGDKLIVAVSTDEFNAGKGKKAVIPYEQRAEILESIRYVDLVIPETNWEQKIED 80 (129)
T ss_pred CcEEEEeeeeccCCHHHHHHHHHHHHhCCEEEEEEeccHhHHhcCCCCCCCHHHHHHHHHcCCccCEEecCCCccChHHH
Confidence 46899999999999999999999999999999999888743322223899999999999999779999866443333444
Q ss_pred HHhcCCCEEEEcCCCC
Q psy11152 86 LDAYDCDFCVHGALEV 101 (112)
Q Consensus 86 i~~l~~~~iv~G~D~~ 101 (112)
+++++++++++|+||.
T Consensus 81 ~~~l~~~~vv~G~d~~ 96 (129)
T cd02171 81 IKKYNVDVFVMGDDWE 96 (129)
T ss_pred HHHhCCCEEEECCCCc
Confidence 6789999999999995
No 10
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=99.92 E-value=1.6e-25 Score=157.23 Aligned_cols=101 Identities=18% Similarity=0.246 Sum_probs=73.9
Q ss_pred CCceEEEEecccCcCCHHHHHHHHHHHHcCC-----eEEEEEecCcc--cccCCCC-CCcCHHHHHHHHhhccCCCEEEE
Q psy11152 4 LNLLATSLQSNYDMVHFGHANNLRQAKELGN-----YLVVGVHTDEE--ISKHKGP-PVFTQQERYKMVRGIKWVDEVVE 75 (112)
Q Consensus 4 ~~~~~v~~~G~FD~~H~GH~~ll~~a~~~~~-----~lvv~v~~d~~--~~~~k~~-~i~s~~eR~~~l~~~~~vd~vi~ 75 (112)
.+++.++++|+|||+|+|||+||++|++.++ .+++++.++|. ..+.+.+ .++|.+||.++++++ |||++++
T Consensus 3 ~~~~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~-Gvd~~~~ 81 (157)
T PF06574_consen 3 NNKKSVVAIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESL-GVDYVIV 81 (157)
T ss_dssp T-S-EEEEES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHT-TESEEEE
T ss_pred CCCCcEEEEeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHc-CCCEEEE
Confidence 3568899999999999999999999999872 24666666663 2323333 699999999999999 8999876
Q ss_pred --cCCC---CCHHHHHH-----hcCCCEEEEcCCCCCCcc
Q psy11152 76 --GAPY---VTTLETLD-----AYDCDFCVHGALEVLVSL 105 (112)
Q Consensus 76 --~~~~---~~~~~fi~-----~l~~~~iv~G~D~~f~~~ 105 (112)
|+++ +++++|++ +++++.||+|+||+||.-
T Consensus 82 ~~F~~~~~~ls~~~Fi~~iL~~~l~~~~ivvG~DfrFG~~ 121 (157)
T PF06574_consen 82 IPFTEEFANLSPEDFIEKILKEKLNVKHIVVGEDFRFGKN 121 (157)
T ss_dssp E-CCCHHCCS-HHHHHHHHCCCHCTEEEEEEETT-EESGG
T ss_pred ecchHHHHcCCHHHHHHHHHHhcCCccEEEEccCccCCCC
Confidence 7653 79999984 589999999999999974
No 11
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=99.91 E-value=1.1e-23 Score=164.02 Aligned_cols=101 Identities=38% Similarity=0.631 Sum_probs=92.1
Q ss_pred ceEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCC--CCCcCHHHHHHHHhhccCCCEEEEcCCCCCHH
Q psy11152 6 LLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKG--PPVFTQQERYKMVRGIKWVDEVVEGAPYVTTL 83 (112)
Q Consensus 6 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~--~~i~s~~eR~~~l~~~~~vd~vi~~~~~~~~~ 83 (112)
.++|++.|+||+||.||+++|++|+++++.|+||+++|+..+..|+ .|+++.+||.+++++|++||.|+++.++..+.
T Consensus 192 ~kiv~~~G~FDl~H~GHi~~L~~A~~lgd~LIVgV~sD~~v~~~Kg~~~Pi~~~~eR~~~v~a~~~Vd~Vvi~~~~~~~~ 271 (353)
T PTZ00308 192 DRIVYVDGSFDLFHIGHIRVLQKARELGDYLIVGVHEDQVVNEQKGSNYPIMNLNERVLGVLSCRYVDEVVIGAPFDVTK 271 (353)
T ss_pred CeEEEECCccCCCCHHHHHHHHHHHHhCCEEEEEEcchHHhHhhcCCCCCCCCHHHHHHHHHhhCCCCeEEEcCCCCChH
Confidence 4789999999999999999999999999999999999998876666 38999999999999999999999987777889
Q ss_pred HHHHhcCCCEEEEcCCCCCCccc
Q psy11152 84 ETLDAYDCDFCVHGALEVLVSLE 106 (112)
Q Consensus 84 ~fi~~l~~~~iv~G~D~~f~~~~ 106 (112)
+|+++++|+++|+|.||.-.+.+
T Consensus 272 ~~i~~~~~d~vv~G~d~~~~~~~ 294 (353)
T PTZ00308 272 EVIDSLHINVVVGGKFSDLVNEE 294 (353)
T ss_pred HHHHHhCCCEEEECCCCccccCC
Confidence 99999999999999999864444
No 12
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=99.90 E-value=1.9e-23 Score=164.97 Aligned_cols=98 Identities=33% Similarity=0.664 Sum_probs=91.6
Q ss_pred CCceEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCC--CCCcCHHHHHHHHhhccCCCEEEEcCCCCC
Q psy11152 4 LNLLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKG--PPVFTQQERYKMVRGIKWVDEVVEGAPYVT 81 (112)
Q Consensus 4 ~~~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~--~~i~s~~eR~~~l~~~~~vd~vi~~~~~~~ 81 (112)
++.++|++.|+||.||.||+++|++|+++++.|+||+++|+.++..|+ .|+++++||.+++++|++||.|+++.|+..
T Consensus 249 ~~~~iVyv~G~FDlfH~GHi~~L~~Ak~lGd~LIVGV~sD~~v~~~KG~~~Pi~~~~ER~~~v~ack~VD~VVi~ap~~~ 328 (418)
T PLN02406 249 PDARIVYIDGAFDLFHAGHVEILRLARALGDFLLVGIHTDQTVSAHRGAHRPIMNLHERSLSVLACRYVDEVIIGAPWEV 328 (418)
T ss_pred CCCeEEEECCeeccCCHHHHHHHHHHHHhCCEEEEEEeccHHHHHhcCCCCCCCCHHHHHHHHhccCcccEEEeCCCCCC
Confidence 457899999999999999999999999999999999999998876676 499999999999999999999999999888
Q ss_pred HHHHHHhcCCCEEEEcCCCC
Q psy11152 82 TLETLDAYDCDFCVHGALEV 101 (112)
Q Consensus 82 ~~~fi~~l~~~~iv~G~D~~ 101 (112)
++++++++++|++|+|+||.
T Consensus 329 ~~~~i~~~~~d~vvhG~~~~ 348 (418)
T PLN02406 329 SKDMITTFNISLVVHGTVAE 348 (418)
T ss_pred CHHHHHHhCCCEEEECCcCC
Confidence 99999999999999999874
No 13
>PLN02413 choline-phosphate cytidylyltransferase
Probab=99.90 E-value=4e-23 Score=155.82 Aligned_cols=93 Identities=46% Similarity=0.708 Sum_probs=87.0
Q ss_pred ceEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEecCcccccCCCCCCcCHHHHHHHHhhccCCCEEEEcCCCCCHH
Q psy11152 6 LLATSLQSNYDMVHFGHANNLRQAKELG--NYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVVEGAPYVTTL 83 (112)
Q Consensus 6 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~--~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~~~vd~vi~~~~~~~~~ 83 (112)
..+|++.|+||.||.||+++|++|++++ +.|+||+++|+...+.|+.|+++.+||.+++++|++||.|++..||..+.
T Consensus 27 ~~rVyvdG~FDLfH~GHir~L~qAK~lg~~d~LIVGV~sDe~v~~~KGrPIm~~~ER~e~V~acKyVDeVV~~aP~~~t~ 106 (294)
T PLN02413 27 PVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYKGKTVMTEDERYESLRHCKWVDEVIPDAPWVITQ 106 (294)
T ss_pred ceEEEEeCchhhCCHHHHHHHHHHHHhCCCCEEEEEecccHHHHhcCCCCCCCHHHHHHHHHhcccccEEeeCCCccccH
Confidence 5689999999999999999999999996 68999999999887778889999999999999999999999988887788
Q ss_pred HHHHhcCCCEEEEcC
Q psy11152 84 ETLDAYDCDFCVHGA 98 (112)
Q Consensus 84 ~fi~~l~~~~iv~G~ 98 (112)
+|+++++||++++|+
T Consensus 107 efI~~~kpDiVvhGd 121 (294)
T PLN02413 107 EFLDKHRIDYVAHDA 121 (294)
T ss_pred HHHHHhCCCEEEECC
Confidence 999999999999995
No 14
>PRK07143 hypothetical protein; Provisional
Probab=99.90 E-value=6.1e-23 Score=155.48 Aligned_cols=99 Identities=14% Similarity=0.169 Sum_probs=80.1
Q ss_pred CceEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccc-cCCCCCCcCHHHHHHHHhhccCCCEEEE--cCCC--
Q psy11152 5 NLLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEIS-KHKGPPVFTQQERYKMVRGIKWVDEVVE--GAPY-- 79 (112)
Q Consensus 5 ~~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~-~~k~~~i~s~~eR~~~l~~~~~vd~vi~--~~~~-- 79 (112)
+.+.++++|+|||+|+|||++|++|++.+...+|....+|... ..+..+++|.++|.++++++ |+|.+++ |+++
T Consensus 14 ~~~~vvaiG~FDGvH~GHq~Ll~~a~~~~~~~vV~tF~~P~~~~~~~~~~l~~~~er~~~l~~~-Gvd~~~~~~F~~~~a 92 (279)
T PRK07143 14 FEKPTFVLGGFESFHLGHLELFKKAKESNDEIVIVIFKNPENLPKNTNKKFSDLNSRLQTLANL-GFKNIILLDFNEELQ 92 (279)
T ss_pred CCCeEEEEccCCcCCHHHHHHHHHHHHCCCcEEEEEeCChHHhcccCcccCCCHHHHHHHHHHC-CCCEEEEeCCCHHHh
Confidence 4578999999999999999999999998776555444455421 22222699999999999999 8999886 6644
Q ss_pred -CCHHHHHHh---cCCCEEEEcCCCCCCc
Q psy11152 80 -VTTLETLDA---YDCDFCVHGALEVLVS 104 (112)
Q Consensus 80 -~~~~~fi~~---l~~~~iv~G~D~~f~~ 104 (112)
+++++|++. ++++.||+|+||+||.
T Consensus 93 ~ls~e~Fi~~ll~l~~~~iVvG~Df~FG~ 121 (279)
T PRK07143 93 NLSGNDFIEKLTKNQVSFFVVGKDFRFGK 121 (279)
T ss_pred CCCHHHHHHHHHhcCCCEEEECCCcccCC
Confidence 789999865 8999999999999995
No 15
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=99.90 E-value=2.2e-23 Score=148.61 Aligned_cols=97 Identities=18% Similarity=0.203 Sum_probs=75.8
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCe-----EEEEEecCccc--ccCCCC-CCcCHHHHHHHHhhccCCCEEEE--cC
Q psy11152 8 ATSLQSNYDMVHFGHANNLRQAKELGNY-----LVVGVHTDEEI--SKHKGP-PVFTQQERYKMVRGIKWVDEVVE--GA 77 (112)
Q Consensus 8 ~v~~~G~FD~~H~GH~~ll~~a~~~~~~-----lvv~v~~d~~~--~~~k~~-~i~s~~eR~~~l~~~~~vd~vi~--~~ 77 (112)
.++++|+|||+|.||+++|++|++.|+. +++++.+.|.. .+.+.. +++|.++|+++++++ +||.+++ |+
T Consensus 1 ~vv~iG~FDgvH~GH~~ll~~a~~~a~~~~~~~vvv~f~~~p~~~~~~~~~~~~l~~~e~R~~~l~~l-~vd~v~~~~f~ 79 (180)
T cd02064 1 TVVAIGNFDGVHLGHQALIKTLKKIARERGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEKLELLESL-GVDYLLVLPFD 79 (180)
T ss_pred CEEEEecCCccCHHHHHHHHHHHHHHHHcCCCeEEEEECCCHHHHhCCCCCCCcCCCHHHHHHHHHHc-CCCEEEEeCCC
Confidence 3789999999999999999999999752 34444444421 222333 799999999999999 6999987 65
Q ss_pred CC---CCHHHHHHh----cCCCEEEEcCCCCCCcc
Q psy11152 78 PY---VTTLETLDA----YDCDFCVHGALEVLVSL 105 (112)
Q Consensus 78 ~~---~~~~~fi~~----l~~~~iv~G~D~~f~~~ 105 (112)
++ +++++|+++ ++++++|+|+||+||..
T Consensus 80 ~~~~~~s~~~Fi~~il~~~~~~~ivvG~Df~FG~~ 114 (180)
T cd02064 80 KEFASLSAEEFVEDLLVKLNAKHVVVGFDFRFGKG 114 (180)
T ss_pred HHHHcCCHHHHHHHHHhhcCCeEEEEccCCCCCCC
Confidence 42 689999754 38999999999999853
No 16
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=99.89 E-value=6.4e-23 Score=162.01 Aligned_cols=99 Identities=48% Similarity=0.841 Sum_probs=88.5
Q ss_pred CceEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhccCCCEEEEcCCCCCHHH
Q psy11152 5 NLLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVVEGAPYVTTLE 84 (112)
Q Consensus 5 ~~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~~~vd~vi~~~~~~~~~~ 84 (112)
+..+|++.|+||++|.||.++|++|+++++.|+||+++|+.+.+.|++|++|.+||++++++|++||+|++..|+....+
T Consensus 52 ~~~rV~~~G~FDllH~GH~~~L~qAk~lGd~LIVGV~SDe~i~~~Kg~PV~~~eER~~~v~alk~VD~Vv~~apy~~~~d 131 (418)
T PLN02406 52 KPVRVYMDGCFDMMHYGHANALRQARALGDELVVGVVSDEEIIANKGPPVTPMHERMIMVSGVKWVDEVIPDAPYAITEE 131 (418)
T ss_pred CceEEEEcCeeCCCCHHHHHHHHHHHHhCCEEEEEEecChhhhccCCCCcCCHHHHHHHHHhcCCCceEEeCCccccchH
Confidence 34689999999999999999999999999999999999998877787899999999999999999999999767644556
Q ss_pred HH----HhcCCCEEEEcCCCCCC
Q psy11152 85 TL----DAYDCDFCVHGALEVLV 103 (112)
Q Consensus 85 fi----~~l~~~~iv~G~D~~f~ 103 (112)
|+ ++++||++|+|+||...
T Consensus 132 ~~~~li~~~~~D~vVhGdD~~~~ 154 (418)
T PLN02406 132 FMNKLFNEYNIDYIIHGDDPCLL 154 (418)
T ss_pred HHHHHHHHhCCCEEEECCCcccc
Confidence 65 58999999999999853
No 17
>KOG2803|consensus
Probab=99.89 E-value=1.6e-23 Score=159.18 Aligned_cols=95 Identities=64% Similarity=1.086 Sum_probs=90.7
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhccCCCEEEEcCCCCCHHHHH
Q psy11152 7 LATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVVEGAPYVTTLETL 86 (112)
Q Consensus 7 ~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~~~vd~vi~~~~~~~~~~fi 86 (112)
-+|++.|+||.+|.||.+.|+||+++++.|+|||++|+.+..+||+|+++.+||++++++++|||+||...|+.+..+++
T Consensus 9 ~rVw~DGCfDm~HyGHanaLrQAkalGdkLivGVHsDeeI~~nKGpPV~t~eERy~~v~~ikWVDEVV~~APyvtt~~~m 88 (358)
T KOG2803|consen 9 VRVWADGCFDMVHYGHANALRQAKALGDKLIVGVHSDEEITLNKGPPVFTDEERYEMVKAIKWVDEVVEGAPYVTTLEWM 88 (358)
T ss_pred eeEEeccchhhhhhhhhHHHHHHHHhCCeEEEEecchHHHHhcCCCCcccHHHHHHHHhhcchhhhhhcCCCeeccHHHH
Confidence 46999999999999999999999999999999999999998889999999999999999999999999988887888999
Q ss_pred HhcCCCEEEEcCCCC
Q psy11152 87 DAYDCDFCVHGALEV 101 (112)
Q Consensus 87 ~~l~~~~iv~G~D~~ 101 (112)
+++++|++|+|+|-+
T Consensus 89 d~y~cd~vvHGdDit 103 (358)
T KOG2803|consen 89 DKYGCDYVVHGDDIT 103 (358)
T ss_pred HHhCCeEEEeCCcce
Confidence 999999999999965
No 18
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=99.88 E-value=2.6e-22 Score=153.69 Aligned_cols=96 Identities=19% Similarity=0.219 Sum_probs=77.1
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCeE-----EEEEecCcc--cccCCCC-CCcCHHHHHHHHhhccCCCEEEE--cC
Q psy11152 8 ATSLQSNYDMVHFGHANNLRQAKELGNYL-----VVGVHTDEE--ISKHKGP-PVFTQQERYKMVRGIKWVDEVVE--GA 77 (112)
Q Consensus 8 ~v~~~G~FD~~H~GH~~ll~~a~~~~~~l-----vv~v~~d~~--~~~~k~~-~i~s~~eR~~~l~~~~~vd~vi~--~~ 77 (112)
+++++|+|||+|.||+++|++|++.|+.+ ++++.+.|. ..+.+.+ +++|.+||+++++++ +||.+++ |+
T Consensus 15 ~vv~iG~FDGvH~GHq~Ll~~a~~~a~~~~~~~~vitFd~~p~~~~~~~~~~~~l~t~eeR~~~l~~~-gVD~~~~~~F~ 93 (305)
T PRK05627 15 CVLTIGNFDGVHRGHQALLARAREIARERGLPSVVMTFEPHPREVFAPDKAPARLTPLRDKAELLAEL-GVDYVLVLPFD 93 (305)
T ss_pred EEEEEeeCCcCCHHHHHHHHHHHHHHHhcCCCEEEEEecCCHHHHcCCCCCCcCCCCHHHHHHHHHHc-CCCEEEEecCC
Confidence 79999999999999999999999998642 444444442 1222333 799999999999999 6999887 65
Q ss_pred CC---CCHHHHHH-----hcCCCEEEEcCCCCCCc
Q psy11152 78 PY---VTTLETLD-----AYDCDFCVHGALEVLVS 104 (112)
Q Consensus 78 ~~---~~~~~fi~-----~l~~~~iv~G~D~~f~~ 104 (112)
++ +++++|++ +++++++|+|+||+||.
T Consensus 94 ~~~~~ls~e~Fi~~~l~~~l~~~~iVvG~Df~FG~ 128 (305)
T PRK05627 94 EEFAKLSAEEFIEDLLVKGLNAKHVVVGFDFRFGK 128 (305)
T ss_pred HHHhcCCHHHHHHHHHHhccCCCEEEECCCCCCCC
Confidence 33 68999985 38999999999999995
No 19
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=99.87 E-value=2.5e-22 Score=152.71 Aligned_cols=96 Identities=15% Similarity=0.159 Sum_probs=77.2
Q ss_pred EEEecccCcCCHHHHHHHHHHHHcCC-----eEEEEEecCccc--ccCCCCCCcCHHHHHHHHhhccCCCEEEE--cCCC
Q psy11152 9 TSLQSNYDMVHFGHANNLRQAKELGN-----YLVVGVHTDEEI--SKHKGPPVFTQQERYKMVRGIKWVDEVVE--GAPY 79 (112)
Q Consensus 9 v~~~G~FD~~H~GH~~ll~~a~~~~~-----~lvv~v~~d~~~--~~~k~~~i~s~~eR~~~l~~~~~vd~vi~--~~~~ 79 (112)
++++|+|||+|+|||+||++|++.|+ ..++++.+.|.. .+.+.+.+++.++|.++++++ |||.+++ |+++
T Consensus 1 ~vaiG~FDGvH~GHq~Li~~~~~~a~~~~~~~~V~tF~phP~~~~~~~~~~~l~~~~~k~~~l~~~-Gvd~~~~~~F~~~ 79 (288)
T TIGR00083 1 SLAIGYFDGLHLGHQALLQELKQIAEEKGLPPAVLLFEPHPSEQFNWLTAPALTPLEDKARQLQIK-GVEQLLVVVFDEE 79 (288)
T ss_pred CEEEEeCCccCHHHHHHHHHHHHHHHHhCCCEEEEEeCCChHHHhCccCCCCCCCHHHHHHHHHHc-CCCEEEEeCCCHH
Confidence 48999999999999999999998753 356677666642 222223599999999999999 8999887 6654
Q ss_pred ---CCHHHHHH-----hcCCCEEEEcCCCCCCcc
Q psy11152 80 ---VTTLETLD-----AYDCDFCVHGALEVLVSL 105 (112)
Q Consensus 80 ---~~~~~fi~-----~l~~~~iv~G~D~~f~~~ 105 (112)
++|++|++ +++++.||+|+||+||..
T Consensus 80 ~a~ls~e~Fi~~~l~~~l~~~~ivvG~Df~FG~~ 113 (288)
T TIGR00083 80 FANLSALQFIDQLIVKHLHVKFLVVGDDFRFGHD 113 (288)
T ss_pred HHcCCHHHHHHHHHHhccCCcEEEECCCccCCCC
Confidence 79999973 479999999999999953
No 20
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=99.86 E-value=1.1e-21 Score=149.99 Aligned_cols=99 Identities=21% Similarity=0.207 Sum_probs=80.2
Q ss_pred ceEEEEecccCcCCHHHHHHHHHHHHcCCe-----EEEEEecCcc--cccCCCC-CCcCHHHHHHHHhhccCCCEEEE--
Q psy11152 6 LLATSLQSNYDMVHFGHANNLRQAKELGNY-----LVVGVHTDEE--ISKHKGP-PVFTQQERYKMVRGIKWVDEVVE-- 75 (112)
Q Consensus 6 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~-----lvv~v~~d~~--~~~~k~~-~i~s~~eR~~~l~~~~~vd~vi~-- 75 (112)
..+++++|+|||+|+|||++|++|++.++. +++++.+.|. ..+.+.+ .+++.++|+++++.+ |||.+++
T Consensus 15 ~~~~l~IG~FDGvHlGHq~ll~~a~~~a~~~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k~~~l~~~-gvd~~~v~~ 93 (304)
T COG0196 15 RGCVLTIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLLAGY-GVDALVVLD 93 (304)
T ss_pred CCcEEEEEcCCccchhHHHHHHHHHHHHHHhCCceEEEEecCCCHHHcCCCCCccccCCHHHHHHHHHhc-CCcEEEEEe
Confidence 468999999999999999999999987632 4555555553 2222223 599999999999999 7999887
Q ss_pred cCCC---CCHHHHHH----hcCCCEEEEcCCCCCCcc
Q psy11152 76 GAPY---VTTLETLD----AYDCDFCVHGALEVLVSL 105 (112)
Q Consensus 76 ~~~~---~~~~~fi~----~l~~~~iv~G~D~~f~~~ 105 (112)
|+.. .++++|+. +++++.+|+|+||+||+.
T Consensus 94 F~~~fa~ls~~~Fv~~lv~~l~~k~ivvG~DF~FGk~ 130 (304)
T COG0196 94 FDLEFANLSAEEFVELLVEKLNVKHIVVGFDFRFGKG 130 (304)
T ss_pred CCHhHhhCCHHHHHHHHHhccCCcEEEEecccccCCC
Confidence 7654 78999975 899999999999999975
No 21
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.86 E-value=5.5e-21 Score=152.26 Aligned_cols=101 Identities=25% Similarity=0.326 Sum_probs=90.7
Q ss_pred CceEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCC--CCCcCHHHHHHHHhhccCCCEEEEcCCCCCH
Q psy11152 5 NLLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKG--PPVFTQQERYKMVRGIKWVDEVVEGAPYVTT 82 (112)
Q Consensus 5 ~~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~--~~i~s~~eR~~~l~~~~~vd~vi~~~~~~~~ 82 (112)
+.++|++.|+||++|.||+++|++|++.++.++|++++|+.....|+ .|+++.++|.+.++++++||+++.+++ .++
T Consensus 339 ~~~iv~~~G~fD~~H~GH~~~l~~a~~~~~~l~v~v~~d~~~~~~k~~~~pi~~~~~R~~~~~~~~~vd~v~~~~~-~~~ 417 (473)
T PRK11316 339 GEKIVMTNGCFDILHAGHVSYLANARKLGDRLIVAVNSDASVKRLKGEGRPVNPLEQRMAVLAALEAVDWVVPFEE-DTP 417 (473)
T ss_pred CCeEEEEecccccCCHHHHHHHHHHHHhCCeeEEEEeCchhHHHhCCCCCCCCCHHHHHHHHHhcCcCCEEEeCCC-CCH
Confidence 35789999999999999999999999999999999999987654454 489999999999999988999998874 589
Q ss_pred HHHHHhcCCCEEEEcCCCCCCccc
Q psy11152 83 LETLDAYDCDFCVHGALEVLVSLE 106 (112)
Q Consensus 83 ~~fi~~l~~~~iv~G~D~~f~~~~ 106 (112)
++|++++++|++++|.||+|...+
T Consensus 418 ~~~~~~~~~d~vv~G~d~~~~~~~ 441 (473)
T PRK11316 418 QRLIAEILPDLLVKGGDYKPEEIA 441 (473)
T ss_pred HHHHHHhCCCEEEECCCCCCCccc
Confidence 999999999999999999988654
No 22
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.82 E-value=4.6e-20 Score=144.57 Aligned_cols=102 Identities=27% Similarity=0.402 Sum_probs=94.5
Q ss_pred ceEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCC--CCcCHHHHHHHHhhccCCCEEEEcCCCCCHH
Q psy11152 6 LLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGP--PVFTQQERYKMVRGIKWVDEVVEGAPYVTTL 83 (112)
Q Consensus 6 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~--~i~s~~eR~~~l~~~~~vd~vi~~~~~~~~~ 83 (112)
.++|++-|+||.+|.||..+|.+|+++|+.|+||+++|.+..+.||. |+.+.+.|...+.++..||+|++|++ ++|+
T Consensus 332 ~~vvfTNGcFDIlH~GHvsyL~~Ar~lgd~Livg~NsDaSvkrLKG~~RPin~~~~Ra~vLa~L~~VD~vV~F~e-dTP~ 410 (467)
T COG2870 332 KKVVFTNGCFDILHAGHVTYLAQARALGDRLIVGVNSDASVKRLKGESRPINSEEDRAAVLAALESVDLVVIFDE-DTPE 410 (467)
T ss_pred CeEEEecchhhhccccHHHHHHHHHhhCCeEEEEeccchhhhhhcCCCCCCCcHHHHHHHHhhcccceEEEEecC-CCHH
Confidence 35899999999999999999999999999999999999988776765 99999999999999999999999985 7899
Q ss_pred HHHHhcCCCEEEEcCCCCCCccccc
Q psy11152 84 ETLDAYDCDFCVHGALEVLVSLESS 108 (112)
Q Consensus 84 ~fi~~l~~~~iv~G~D~~f~~~~~~ 108 (112)
+.|+.++||.+|.|.||+-..++++
T Consensus 411 ~LI~~~~PdilVKGgDy~~~~i~g~ 435 (467)
T COG2870 411 ELIEAVKPDILVKGGDYKIEKIVGA 435 (467)
T ss_pred HHHHHhCcceEEccCCCChhhccch
Confidence 9999999999999999998877764
No 23
>KOG2803|consensus
Probab=99.81 E-value=1.6e-19 Score=137.42 Aligned_cols=101 Identities=38% Similarity=0.570 Sum_probs=91.9
Q ss_pred ceEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCC--CCcCHHHHHHHHhhccCCCEEEEcCCCCCHH
Q psy11152 6 LLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGP--PVFTQQERYKMVRGIKWVDEVVEGAPYVTTL 83 (112)
Q Consensus 6 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~--~i~s~~eR~~~l~~~~~vd~vi~~~~~~~~~ 83 (112)
.++|++.|.||+||.||+..|++|+++++.|+||++.|+..+.+++. |++++.||...+.+|++||+|++..|+....
T Consensus 198 ~kvVYvdGaFDLFH~GHl~~Le~ak~lgdyLIvGI~~D~~vneykgs~~PiMnl~ER~LsvlackyVdeVvvGaP~~v~s 277 (358)
T KOG2803|consen 198 DKVVYVDGAFDLFHAGHLDFLEKAKRLGDYLIVGIHTDQTVNEYKGSNYPIMNLHERVLSVLACKYVDEVVVGAPYEVTS 277 (358)
T ss_pred CcEEEEcCchhhhccchHHHHHHHHhccCceEEEeecCcchhhhccCCCccchHHHHHHHHhhhcccceEEEcCchhccH
Confidence 57899999999999999999999999999999999999988877765 9999999999999999999999988887778
Q ss_pred HHHHhcCCCEEEEcC--CCCCCccc
Q psy11152 84 ETLDAYDCDFCVHGA--LEVLVSLE 106 (112)
Q Consensus 84 ~fi~~l~~~~iv~G~--D~~f~~~~ 106 (112)
+|++.++++.++.|. +++=.+.|
T Consensus 278 ~~i~~~~~~~v~~g~~~~~~~~~~p 302 (358)
T KOG2803|consen 278 EFIKLFNIDKVAHGTIPDFRDPSDP 302 (358)
T ss_pred HHHHhcCceEEEEeccccccCccCc
Confidence 999999999999999 55544443
No 24
>KOG2804|consensus
Probab=99.78 E-value=2.9e-19 Score=135.38 Aligned_cols=99 Identities=40% Similarity=0.602 Sum_probs=90.1
Q ss_pred ceEEEEecccCcCCHHHHHHHHHHHHcCC--eEEEEEecCcccccCCCCCCcCHHHHHHHHhhccCCCEEEEcCCCCCHH
Q psy11152 6 LLATSLQSNYDMVHFGHANNLRQAKELGN--YLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVVEGAPYVTTL 83 (112)
Q Consensus 6 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~--~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~~~vd~vi~~~~~~~~~ 83 (112)
.-+|++.|.||+||.||...|+||+...- +|+||+++|....+.||.++++.+||++.|++|++||+||...||..+.
T Consensus 63 PVRVYADGIyDLFH~GHarqL~QaK~~FPNvyLiVGvc~De~Thk~KG~TVm~e~ERyE~lrHCryVDEVi~~APW~lt~ 142 (348)
T KOG2804|consen 63 PVRVYADGIYDLFHYGHARQLEQAKKLFPNVYLIVGVCSDELTHKFKGRTVMNENERYEALRHCRYVDEVIPNAPWTLTP 142 (348)
T ss_pred ceEEEccchHHHhhhhHHHHHHHHHHhCCCeEEEEeecCchhhhhccCceecChHHHHHHhhhhhhhhhhccCCCccccH
Confidence 34799999999999999999999999974 6999999999877889999999999999999999999999999997788
Q ss_pred HHHHhcCCCEEEEcCCCCCCcc
Q psy11152 84 ETLDAYDCDFCVHGALEVLVSL 105 (112)
Q Consensus 84 ~fi~~l~~~~iv~G~D~~f~~~ 105 (112)
+|+.++++|+|.+ +|-.|.+.
T Consensus 143 EFL~~HKIDfVAH-DdIPY~s~ 163 (348)
T KOG2804|consen 143 EFLEKHKIDFVAH-DDIPYVSA 163 (348)
T ss_pred HHHHhcccceeec-cCccccCC
Confidence 9999999999998 77777643
No 25
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain. Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=99.76 E-value=7.2e-18 Score=113.78 Aligned_cols=96 Identities=18% Similarity=0.165 Sum_probs=74.1
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcC-CeEEEEEecCcccccCCCCCCcCHHHHHHHHhhccC-CCEEEEcCCC----CC
Q psy11152 8 ATSLQSNYDMVHFGHANNLRQAKELG-NYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKW-VDEVVEGAPY----VT 81 (112)
Q Consensus 8 ~v~~~G~FD~~H~GH~~ll~~a~~~~-~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~~~-vd~vi~~~~~----~~ 81 (112)
+++++|+|||+|.||+.++++|++.+ +.++|.+.+++.... +...+++.++|+++++++.. ++.++..+.. ..
T Consensus 1 ~~~~~G~Fdp~H~GH~~ll~~a~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~R~~~l~~~~~~~~~v~~~~~~~~~~~~ 79 (143)
T cd02039 1 VGIIIGRFEPFHLGHLKLIKEALEEALDEVIIIIVSNPPKKK-RNKDPFSLHERVEMLKEILKDRLKVVPVDFPEVKILL 79 (143)
T ss_pred CeEEeeccCCcCHHHHHHHHHHHHHcCCceEEEEcCCChhhc-ccccCCCHHHHHHHHHHhccCCcEEEEEecChhhccC
Confidence 47899999999999999999999999 888888877654321 12368999999999999942 7787763211 22
Q ss_pred HHHH----HHhcCCCEEEEcCCCCCCc
Q psy11152 82 TLET----LDAYDCDFCVHGALEVLVS 104 (112)
Q Consensus 82 ~~~f----i~~l~~~~iv~G~D~~f~~ 104 (112)
+.+| +..++++++++|.||.|+-
T Consensus 80 ~~~~~~~~~~~~~~~~~v~G~d~~~~~ 106 (143)
T cd02039 80 AVVFILKILLKVGPDKVVVGEDFAFGK 106 (143)
T ss_pred HHHHHHHHHHHcCCcEEEECCccccCC
Confidence 3323 3568999999999999985
No 26
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.70 E-value=2.2e-16 Score=110.77 Aligned_cols=87 Identities=18% Similarity=0.269 Sum_probs=73.3
Q ss_pred ceEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhh-ccCCCEEEEcCCCCCHHH
Q psy11152 6 LLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRG-IKWVDEVVEGAPYVTTLE 84 (112)
Q Consensus 6 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~-~~~vd~vi~~~~~~~~~~ 84 (112)
|+++++.|+|||+|.||+.++++|++.+++++++++.++ .| .++.|.++|+++++. +++++.+.+.+-+..+.+
T Consensus 1 ~~igi~gGsFdP~H~GHl~~~~~a~~~~d~v~v~~~~~~----~k-~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~t~~ 75 (159)
T PRK00168 1 MKIAIYPGSFDPITNGHLDIIERASRLFDEVIVAVAINP----SK-KPLFSLEERVELIREATAHLPNVEVVSFDGLLVD 75 (159)
T ss_pred CcEEEEeeecCCCCHHHHHHHHHHHHHCCEEEEEECCCC----CC-CCCCCHHHHHHHHHHHHcCCCCEEEecCCccHHH
Confidence 358999999999999999999999999999999887654 23 368999999999987 777888776432334778
Q ss_pred HHHhcCCCEEEEc
Q psy11152 85 TLDAYDCDFCVHG 97 (112)
Q Consensus 85 fi~~l~~~~iv~G 97 (112)
+++.+++++++.|
T Consensus 76 ~~~~~~~~~~~~g 88 (159)
T PRK00168 76 FAREVGATVIVRG 88 (159)
T ss_pred HHHHcCCCEEEec
Confidence 8999999999999
No 27
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=99.69 E-value=1e-16 Score=96.43 Aligned_cols=64 Identities=39% Similarity=0.672 Sum_probs=54.6
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhccCCC
Q psy11152 8 ATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVD 71 (112)
Q Consensus 8 ~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~~~vd 71 (112)
++++.|+|||+|.||+.++++|++.++.+++++.+++..++.+..++++.++|.++++++..++
T Consensus 1 i~~~~G~Fdp~H~GH~~~l~~a~~~~~~~vv~i~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~ 64 (66)
T TIGR00125 1 RVIFVGTFDPFHLGHLDLLERAKELFDELIVGVGSDQFVNPLKGEPVFSLEERLEMLKALKYVD 64 (66)
T ss_pred CEEEcCccCCCCHHHHHHHHHHHHhCCEEEEEECchHhccccCCCCCCCHHHHHHHHHHhcccc
Confidence 4789999999999999999999999998888888876655544448999999999999986543
No 28
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=99.69 E-value=2.7e-16 Score=109.72 Aligned_cols=85 Identities=20% Similarity=0.323 Sum_probs=72.8
Q ss_pred ceEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhc-cCCCEEEE--cCCCCCH
Q psy11152 6 LLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGI-KWVDEVVE--GAPYVTT 82 (112)
Q Consensus 6 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~-~~vd~vi~--~~~~~~~ 82 (112)
++++++.|+|||+++||+.+|++|.+++|+++|+|..+| .| .|++|.+||.+++++. +..++|-+ |+ ...
T Consensus 2 ~~iavypGSFDPiTnGHlDii~RA~~~Fd~viVaV~~np----~K-~plFsleER~~l~~~~~~~l~nV~V~~f~--~Ll 74 (159)
T COG0669 2 MKIAVYPGSFDPITNGHLDIIKRASALFDEVIVAVAINP----SK-KPLFSLEERVELIREATKHLPNVEVVGFS--GLL 74 (159)
T ss_pred CeeEEeCCCCCCCccchHHHHHHHHHhccEEEEEEEeCC----Cc-CCCcCHHHHHHHHHHHhcCCCceEEEecc--cHH
Confidence 578999999999999999999999999999999998776 23 4799999999999764 45666544 65 367
Q ss_pred HHHHHhcCCCEEEEc
Q psy11152 83 LETLDAYDCDFCVHG 97 (112)
Q Consensus 83 ~~fi~~l~~~~iv~G 97 (112)
.+|.++.++..+|.|
T Consensus 75 vd~ak~~~a~~ivRG 89 (159)
T COG0669 75 VDYAKKLGATVLVRG 89 (159)
T ss_pred HHHHHHcCCCEEEEe
Confidence 889999999999998
No 29
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=99.68 E-value=7.2e-17 Score=112.91 Aligned_cols=89 Identities=27% Similarity=0.340 Sum_probs=67.8
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhccCCCEEEE---------cC
Q psy11152 7 LATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVVE---------GA 77 (112)
Q Consensus 7 ~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~~~vd~vi~---------~~ 77 (112)
++|++.|+||++|.||+.+|++|.+.+++++|++++++..++.|+.+++|.++|.++++.+ ++.+.. .|
T Consensus 2 ~~v~~gGtFDplH~GH~~ll~~A~~~~d~livgi~~d~~~~~~K~~~i~~~e~R~~~v~~~--~~~~~~~~~~~i~~i~d 79 (153)
T PRK00777 2 MKVAVGGTFDPLHDGHRALLRKAFELGKRVTIGLTSDEFAKSYKKHKVRPYEVRLKNLKKF--LKAVEYDREYEIVKIDD 79 (153)
T ss_pred cEEEEecccCCCCHHHHHHHHHHHHcCCEEEEEEcCCccccccCCCCCCCHHHHHHHHHHH--HHhcCCCCcEEEEeccc
Confidence 5799999999999999999999999999999999999876554545899999999999854 332211 12
Q ss_pred CCCCHHHHHHhcCCCEEEEcCCCC
Q psy11152 78 PYVTTLETLDAYDCDFCVHGALEV 101 (112)
Q Consensus 78 ~~~~~~~fi~~l~~~~iv~G~D~~ 101 (112)
++.++ + ..++|++|+|.|-.
T Consensus 80 ~~gp~---~-~~~~d~ivvs~et~ 99 (153)
T PRK00777 80 PYGPA---L-EDDFDAIVVSPETY 99 (153)
T ss_pred cCCCc---c-ccCCCEEEEChhhh
Confidence 21111 1 23699999999843
No 30
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.65 E-value=2e-15 Score=104.38 Aligned_cols=85 Identities=22% Similarity=0.235 Sum_probs=67.9
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhc-cCCCEEEE--cCCCCCHH
Q psy11152 7 LATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGI-KWVDEVVE--GAPYVTTL 83 (112)
Q Consensus 7 ~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~-~~vd~vi~--~~~~~~~~ 83 (112)
+++++.|+|||+|.||+.++++|.+.+++++|++..+| .|. +++|.++|+++++.. +..+.+-+ +.. ....
T Consensus 2 kiai~~GSFDPih~GHl~ii~~A~~~~D~v~v~v~~np----~K~-~~~s~e~R~~~l~~~~~~~~~v~v~~~~~-~l~v 75 (140)
T PRK13964 2 KIAIYPGSFDPFHKGHLNILKKALKLFDKVYVVVSINP----DKS-NASDLDSRFKNVKNKLKDFKNVEVLINEN-KLTA 75 (140)
T ss_pred eEEEEeeeeCCCCHHHHHHHHHHHHhCCEEEEEeccCC----CCC-CCCCHHHHHHHHHHHHcCCCCcEEecCcC-CcHH
Confidence 58999999999999999999999999999999888764 232 678999999999643 44444333 211 3456
Q ss_pred HHHHhcCCCEEEEc
Q psy11152 84 ETLDAYDCDFCVHG 97 (112)
Q Consensus 84 ~fi~~l~~~~iv~G 97 (112)
+|.++.+++++|.|
T Consensus 76 ~~~~~~~a~~ivrG 89 (140)
T PRK13964 76 EIAKKLGANFLIRS 89 (140)
T ss_pred HHHHHCCCeEEEEe
Confidence 79999999999999
No 31
>cd02163 PPAT Phosphopantetheine adenylyltransferase. Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.
Probab=99.63 E-value=5.1e-15 Score=103.25 Aligned_cols=85 Identities=20% Similarity=0.309 Sum_probs=70.4
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhh-ccCCCEEEEcCCCCCHHHHH
Q psy11152 8 ATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRG-IKWVDEVVEGAPYVTTLETL 86 (112)
Q Consensus 8 ~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~-~~~vd~vi~~~~~~~~~~fi 86 (112)
+++++|+|||+|.||+.++++|.+.+++++++++.++ .| .+..+.++|++|++. +++++.+.+.+-+..+.+++
T Consensus 1 i~i~gGsFdP~H~GHl~l~~~a~~~~d~v~v~~~~~~----~k-~~~~~~~~R~~ml~~a~~~~~~~~v~~~es~t~~~l 75 (153)
T cd02163 1 IAVYPGSFDPITNGHLDIIERASKLFDEVIVAVAVNP----SK-KPLFSLEERVELIREATKHLPNVEVDGFDGLLVDFA 75 (153)
T ss_pred CEEEEeccCCCCHHHHHHHHHHHHHCCEEEEEEcCCC----CC-CCCCCHHHHHHHHHHHHcCCCCEEecCCcchHHHHH
Confidence 3689999999999999999999999999999887654 23 367899999999986 67777776643223467889
Q ss_pred HhcCCCEEEEc
Q psy11152 87 DAYDCDFCVHG 97 (112)
Q Consensus 87 ~~l~~~~iv~G 97 (112)
+.++.+++++|
T Consensus 76 ~~l~~~~~i~G 86 (153)
T cd02163 76 RKHGANVIVRG 86 (153)
T ss_pred HHcCCCEEEEC
Confidence 99999999999
No 32
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.59 E-value=2.5e-14 Score=109.38 Aligned_cols=93 Identities=16% Similarity=0.186 Sum_probs=71.7
Q ss_pred ceEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhc-cCCCEEEE--cCC----
Q psy11152 6 LLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGI-KWVDEVVE--GAP---- 78 (112)
Q Consensus 6 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~-~~vd~vi~--~~~---- 78 (112)
.+++.+.|+|||+|.||+.++++|.+.++.++|.+.+. + .+.+|.++|+++++.. ++.+.+.+ ++.
T Consensus 114 ~~~~~~~~~FDPiH~GHl~ii~~a~~~~d~~~V~i~~~------~-~~~~~~e~R~~ml~~ai~~~~~v~v~~~~~l~v~ 186 (297)
T cd02169 114 KKIAAIVMNANPFTLGHRYLVEKAAAENDWVHLFVVSE------D-KSLFSFADRFKLVKKGTKHLKNVTVHSGGDYIIS 186 (297)
T ss_pred CceEEEEecCCCCchHHHHHHHHHHhhCCeEEEEEEcC------C-CCCCCHHHHHHHHHHHhCCCCCEEEEecCCeeec
Confidence 47889999999999999999999999999877776543 1 2568999999999865 33332221 111
Q ss_pred ------C--------------CCHHHHH----HhcCCCEEEEcCCCCCCcc
Q psy11152 79 ------Y--------------VTTLETL----DAYDCDFCVHGALEVLVSL 105 (112)
Q Consensus 79 ------~--------------~~~~~fi----~~l~~~~iv~G~D~~f~~~ 105 (112)
+ +++++|+ ++++++.+++|+||+||..
T Consensus 187 ~~~~~~~~~~~~~~~~~~~a~lsa~~Fi~iL~~~l~~~~ivvG~Df~FG~~ 237 (297)
T cd02169 187 SATFPSYFIKEQDVVIKAQTALDARIFRKYIAPALNITKRYVGEEPFSRVT 237 (297)
T ss_pred cccChhhhcCChhHHHHHHhcCCHHHHHHHHHHHcCCcEEEEcCCCCCCCc
Confidence 0 4788886 4689999999999999963
No 33
>PLN02388 phosphopantetheine adenylyltransferase
Probab=99.58 E-value=4.8e-15 Score=105.91 Aligned_cols=62 Identities=29% Similarity=0.330 Sum_probs=53.1
Q ss_pred ceEEEEecccCcCCHHHHHHHHHHHHcCC-eEEEEEecCcccccCCCC-CCcCHHHHHHHHhhc
Q psy11152 6 LLATSLQSNYDMVHFGHANNLRQAKELGN-YLVVGVHTDEEISKHKGP-PVFTQQERYKMVRGI 67 (112)
Q Consensus 6 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~-~lvv~v~~d~~~~~~k~~-~i~s~~eR~~~l~~~ 67 (112)
.+.|+++|+||++|.||+.||++|.+.++ .+++|+++++...+.+.+ .+.|+++|.+.++++
T Consensus 19 ~~~Vv~gGtFDgLH~GHq~LL~~A~~~a~~~vvIgft~~p~l~~k~~~~~I~~~e~R~~~l~~f 82 (177)
T PLN02388 19 YGAVVLGGTFDRLHDGHRLFLKAAAELARDRIVIGVCDGPMLSKKQFAELIQPIEERMHNVEEY 82 (177)
T ss_pred CCeEEEEecCCccCHHHHHHHHHHHHhhhcCEEEecCCChhhcccCCCcccCCHHHHHHHHHHH
Confidence 46899999999999999999999999984 799999999976433323 799999999999875
No 34
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=99.56 E-value=1.3e-14 Score=111.90 Aligned_cols=92 Identities=24% Similarity=0.346 Sum_probs=69.8
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhc--cCCCEEEE---cCCCCCH
Q psy11152 8 ATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGI--KWVDEVVE---GAPYVTT 82 (112)
Q Consensus 8 ~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~--~~vd~vi~---~~~~~~~ 82 (112)
+|++.|+||.+|.||..+|++|.+.++.|+|++++|+.+.++|..+ .|+++|.++++++ +.++.+.+ .|++-++
T Consensus 2 ~V~vgGTFD~lH~GH~~lL~~A~~~gd~LiVgvt~D~~~~~~k~~~-~~~e~R~~~v~~fl~~~~~~~~i~~i~D~~Gpt 80 (322)
T PRK01170 2 ITVVGGTFSKLHKGHKALLKKAIETGDEVVIGLTSDEYVRKNKVYP-IPYEDRKRKLENFIKKFTNKFRIRPIDDRYGNT 80 (322)
T ss_pred EEEEccccccCChHHHHHHHHHHHcCCEEEEEEccHHHHHhcCCCC-CCHHHHHHHHHHHHHhcCCcEEEEecCCCCCCC
Confidence 6899999999999999999999999999999999999876545446 9999999999984 44554333 2332211
Q ss_pred HHHHHhcCCCEEEEcCCCCCC
Q psy11152 83 LETLDAYDCDFCVHGALEVLV 103 (112)
Q Consensus 83 ~~fi~~l~~~~iv~G~D~~f~ 103 (112)
+..-++|.||+|.|-.++
T Consensus 81 ---~~~~~~d~IVVS~ET~~~ 98 (322)
T PRK01170 81 ---LYEEDYEIIVVSPETYQR 98 (322)
T ss_pred ---cccCCCCEEEEecccccc
Confidence 234567888887776544
No 35
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.
Probab=99.55 E-value=6.4e-14 Score=97.85 Aligned_cols=85 Identities=21% Similarity=0.334 Sum_probs=65.7
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhc-cCCCEEEEcCCCCCHHHHH
Q psy11152 8 ATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGI-KWVDEVVEGAPYVTTLETL 86 (112)
Q Consensus 8 ~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~-~~vd~vi~~~~~~~~~~fi 86 (112)
++++.|+|||+|.||+.++++|.+.+|+++++++.+| .| .+..+.++|++|++.+ .+.+.+.+.+-+..+.+.+
T Consensus 1 i~l~gGsFdP~H~GHl~l~~~a~~~~d~v~~~~~~~p----~k-~~~~~~~~R~~m~~~a~~~~~~~~v~~~e~yt~dt~ 75 (155)
T TIGR01510 1 IALYPGSFDPVTNGHLDIIKRAAALFDEVIVAVAKNP----SK-KPLFSLEERVELIKDATKHLPNVRVDVFDGLLVDYA 75 (155)
T ss_pred CEEEEeecCCCcHHHHHHHHHHHHhCCEEEEEEcCCC----CC-CCCcCHHHHHHHHHHHHhhCCCeEEcCccchHHHHH
Confidence 4789999999999999999999999999998887443 23 2578999999999876 2333333322223466788
Q ss_pred HhcCCCEEEEc
Q psy11152 87 DAYDCDFCVHG 97 (112)
Q Consensus 87 ~~l~~~~iv~G 97 (112)
+.++.++++.|
T Consensus 76 ~~l~~~~~i~G 86 (155)
T TIGR01510 76 KELGATFIVRG 86 (155)
T ss_pred HHcCCCEEEec
Confidence 99999999999
No 36
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=99.53 E-value=1.1e-13 Score=97.47 Aligned_cols=91 Identities=18% Similarity=0.156 Sum_probs=63.3
Q ss_pred EEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHh-hccCCC----EEEE--cCCCCC
Q psy11152 9 TSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVR-GIKWVD----EVVE--GAPYVT 81 (112)
Q Consensus 9 v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~-~~~~vd----~vi~--~~~~~~ 81 (112)
++++|+|||+|.||+.++++|++.++++++++.++.... +....++.++|++|++ .++..+ .+.+ .++...
T Consensus 2 ~v~~G~FdP~H~GHl~~i~~a~~~~d~l~v~v~s~~~~~--~~~~~~~~~~R~~mi~~~~~~~~~~~~~v~v~~~~d~~~ 79 (163)
T cd02166 2 ALFIGRFQPFHLGHLKVIKWILEEVDELIIGIGSAQESH--TLENPFTAGERVLMIRRALEEEGIDLSRYYIIPVPDIER 79 (163)
T ss_pred eEEeeccCCCCHHHHHHHHHHHHHCCEEEEEecCCCCCC--CCCCCCCHHHHHHHHHHHHHhcCCCcCeEEEEecCCCCc
Confidence 689999999999999999999999999999886643221 2124578899999998 455554 3333 322223
Q ss_pred HHHHHHh-----cCCCEEEEcCCCC
Q psy11152 82 TLETLDA-----YDCDFCVHGALEV 101 (112)
Q Consensus 82 ~~~fi~~-----l~~~~iv~G~D~~ 101 (112)
.+.+.+. -+.+.++.|.+|.
T Consensus 80 ~~~w~~~v~~~vp~~div~~g~~~~ 104 (163)
T cd02166 80 NSLWVSYVESLTPPFDVVYSGNPLV 104 (163)
T ss_pred hHHHHHHHHHHCCCCCEEEECchHH
Confidence 3334322 1578899997653
No 37
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=99.53 E-value=1.1e-13 Score=97.93 Aligned_cols=89 Identities=19% Similarity=0.262 Sum_probs=61.4
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHh-hccCCC-E---EEEcCCCCCH
Q psy11152 8 ATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVR-GIKWVD-E---VVEGAPYVTT 82 (112)
Q Consensus 8 ~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~-~~~~vd-~---vi~~~~~~~~ 82 (112)
+++++|+|||+|.||+.++++|++.+|++++++.++... .+....++.+||++|++ .++.++ . ++..++ ..-
T Consensus 1 rgl~~G~FdP~H~GHl~ii~~a~~~~D~lii~i~s~~~~--~k~~~p~~~~eR~~mi~~al~~~~~~~~~~vP~~d-~~~ 77 (165)
T TIGR01527 1 RGFYIGRFQPFHLGHLEVIKKIAEEVDELIIGIGSAQES--HTLENPFTAGERILMITQSLKEVGDLTYYIIPIED-IER 77 (165)
T ss_pred CeEEEeccCCCCHHHHHHHHHHHHHCCEEEEEEcCCCCC--CCCCCCCCHHHHHHHHHHHHhcCCCceEEEEecCC-ccH
Confidence 368899999999999999999999999999988776532 22234557799999994 556553 2 222321 122
Q ss_pred HHHHHhc------CCCEEEEcCC
Q psy11152 83 LETLDAY------DCDFCVHGAL 99 (112)
Q Consensus 83 ~~fi~~l------~~~~iv~G~D 99 (112)
.+....+ ++|.++.|..
T Consensus 78 ~~~w~~~v~~~~p~~D~vf~~~~ 100 (165)
T TIGR01527 78 NSIWVSYVESMTPPFDVVYSNNP 100 (165)
T ss_pred HHHHHHHHHHhCCCCCEEEECCH
Confidence 2223333 7899999853
No 38
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=99.52 E-value=1.6e-13 Score=98.47 Aligned_cols=87 Identities=17% Similarity=0.119 Sum_probs=65.8
Q ss_pred EecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhc-cCCCEEEE--------------
Q psy11152 11 LQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGI-KWVDEVVE-------------- 75 (112)
Q Consensus 11 ~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~-~~vd~vi~-------------- 75 (112)
+.=+|||+|+||+.++++|.+.++.+.|.+.+. + .+.+|.++|++|++.. ++.+.+.+
T Consensus 4 ~~~~~DPiH~GHl~i~~~a~~~~d~~~V~v~p~------~-~~~~s~e~R~~Mi~~a~~~~~~v~v~~~~~~~v~~~~~~ 76 (182)
T smart00764 4 IVMNANPFTLGHRYLVEQAAAECDWVHLFVVSE------D-ASLFSFDERFALVKKGTKDLDNVTVHSGSDYIISRATFP 76 (182)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCceEEEEEeC------C-CCCCCHHHHHHHHHHHhccCCCEEEEecCCceeccccCh
Confidence 345899999999999999999998877777653 1 2467999999999864 43332221
Q ss_pred --cCCC----------CCHHHHHH----hcCCCEEEEcCCCCCCc
Q psy11152 76 --GAPY----------VTTLETLD----AYDCDFCVHGALEVLVS 104 (112)
Q Consensus 76 --~~~~----------~~~~~fi~----~l~~~~iv~G~D~~f~~ 104 (112)
|+++ +++++|++ +++++.|++|+||+||.
T Consensus 77 ~~~~~~~~~~~~~~a~lsa~~Fi~~L~~~l~~~~ivvG~df~FG~ 121 (182)
T smart00764 77 SYFLKEQDVVIKSQTTLDLRIFRKYIAPALGITHRYVGEEPFSPV 121 (182)
T ss_pred hhhcCchhHHHHHHhcCCHHHHHHHHHHHcCceEEEEcCCCCCCC
Confidence 1111 47888873 68999999999999996
No 39
>PRK13670 hypothetical protein; Provisional
Probab=99.52 E-value=8e-14 Score=109.98 Aligned_cols=91 Identities=29% Similarity=0.317 Sum_probs=71.3
Q ss_pred ceEEEEecccCcCCHHHHHHHHHHHHcCC-eEEEEEecCcccccCCCCCCcCHHHHHHHHhhccCCCEEEE--cCCC--C
Q psy11152 6 LLATSLQSNYDMVHFGHANNLRQAKELGN-YLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVVE--GAPY--V 80 (112)
Q Consensus 6 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~-~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~~~vd~vi~--~~~~--~ 80 (112)
|+++-++-=|||||+||+.+|++|++.+. .+++++.+..++.+.. +.+++.++|.+++.++ |||.|++ |+ + .
T Consensus 1 Mk~~GIIaEfdg~H~GH~~~i~~a~~~a~~~~~~~Vmp~~f~qrg~-p~i~~~~~R~~~a~~~-GvD~vielpf~-~a~~ 77 (388)
T PRK13670 1 MKVTGIIVEYNPFHNGHLYHLNQAKKLTNADVTIAVMSGNFVQRGE-PAIVDKWTRAKMALEN-GVDLVVELPFL-YSVQ 77 (388)
T ss_pred CceeEEEeeeCCcCHHHHHHHHHHHHHHhCCCcEEEecHHHhCCCC-CCCCCHHHHHHHHHHc-CCCEEEEeCCc-hHhC
Confidence 34666677899999999999999998753 4444444554454322 4699999999999999 8999997 54 3 6
Q ss_pred CHHHHHH-------hcCCCEEEEcCC
Q psy11152 81 TTLETLD-------AYDCDFCVHGAL 99 (112)
Q Consensus 81 ~~~~fi~-------~l~~~~iv~G~D 99 (112)
++++|++ +++++.+|+|+|
T Consensus 78 sae~F~~~aV~iL~~l~v~~lv~G~e 103 (388)
T PRK13670 78 SADFFAEGAVSILDALGVDSLVFGSE 103 (388)
T ss_pred CHHHHHHhHHHHHHHcCCCEEEEcCC
Confidence 8888864 489999999999
No 40
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=99.50 E-value=5.4e-14 Score=97.44 Aligned_cols=60 Identities=23% Similarity=0.296 Sum_probs=50.3
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcC-CeEEEEEecCcccccCCCC-CCcCHHHHHHHHhhc
Q psy11152 8 ATSLQSNYDMVHFGHANNLRQAKELG-NYLVVGVHTDEEISKHKGP-PVFTQQERYKMVRGI 67 (112)
Q Consensus 8 ~v~~~G~FD~~H~GH~~ll~~a~~~~-~~lvv~v~~d~~~~~~k~~-~i~s~~eR~~~l~~~ 67 (112)
+|++.|+||++|.||+.+|++|.+.+ +++++++++++....++.+ +++|.++|+++++.+
T Consensus 1 ~v~~GGtFD~lH~GH~~Ll~~a~~~~~d~v~vgvt~d~~~~~k~~~~~i~s~e~R~~~l~~~ 62 (143)
T cd02164 1 KVAVGGTFDRLHDGHKILLSVAFLLAGEKLIIGVTSDELLKNKSLKELIEPYEERIANLHEF 62 (143)
T ss_pred CEEEcccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCchhcccCCCCCCCCCHHHHHHHHHHH
Confidence 37899999999999999999999998 7799999998844332333 689999999999865
No 41
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=99.47 E-value=1.1e-13 Score=93.79 Aligned_cols=62 Identities=35% Similarity=0.469 Sum_probs=42.9
Q ss_pred EEecccCcCCHHHHHHHHHHHHcCCe-EEEEEecCcccccCCCCCCcCHHHHHHHHhhccCCCE
Q psy11152 10 SLQSNYDMVHFGHANNLRQAKELGNY-LVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDE 72 (112)
Q Consensus 10 ~~~G~FD~~H~GH~~ll~~a~~~~~~-lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~~~vd~ 72 (112)
++.|+|||+|.||+.++++|++.++. +++++.++....+ .+.+++|.++|+++++.+...+.
T Consensus 1 l~~GsFdP~H~GH~~~l~~a~~~~~~~~vi~v~~~~~~~k-~~~~~~~~~~R~~ml~~~~~~~~ 63 (157)
T PF01467_consen 1 LFGGSFDPPHNGHLNLLREARELFDEDLVIVVPSDNSPHK-DKKPIFSFEERLEMLRAAFKDDP 63 (157)
T ss_dssp EEEE--TT--HHHHHHHHHHHHHSSESEEEEEEEEHHCHS-TTSSSSTHHHHHHHHHHHHTTCT
T ss_pred CeeeEcCcccHHHHHHHHHHHHhccccccccccccccccc-cccccCcHHHHHHHHHHHHhhcC
Confidence 57899999999999999999999986 4555555443221 11268999999999987644444
No 42
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.40 E-value=6.5e-12 Score=97.53 Aligned_cols=99 Identities=17% Similarity=0.121 Sum_probs=69.7
Q ss_pred CCCCCceEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhc-cCCC--EEEE--
Q psy11152 1 METLNLLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGI-KWVD--EVVE-- 75 (112)
Q Consensus 1 ~~~~~~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~-~~vd--~vi~-- 75 (112)
|.++..++++++|.|||+|.||+.++++|++.+++++|++.+.......+ ..+|.++|++|++.. ++++ .+.+
T Consensus 1 ~~~~~~~~~~~~G~F~P~H~GHl~~i~~a~~~~d~l~v~i~s~~~~~~~~--~~~~~~~R~~mi~~~~~~~~~~r~~~~p 78 (340)
T PRK05379 1 PMNRRYDYLVFIGRFQPFHNGHLAVIREALSRAKKVIVLIGSADLARSIK--NPFSFEERAQMIRAALAGIDLARVTIRP 78 (340)
T ss_pred CCCccceEEEEeeccCCCCHHHHHHHHHHHHHCCEEEEEEccCCCCCcCC--CCCCHHHHHHHHHHHhhcCCCceEEEEE
Confidence 34566789999999999999999999999999999999998643222222 348999999999865 5454 2332
Q ss_pred cCCC-CCHHHH---HHh-------cCCCEEEEcCCCC
Q psy11152 76 GAPY-VTTLET---LDA-------YDCDFCVHGALEV 101 (112)
Q Consensus 76 ~~~~-~~~~~f---i~~-------l~~~~iv~G~D~~ 101 (112)
..+. .+..-+ +++ -+++.+++|+|+.
T Consensus 79 i~d~~~~~~~W~~~v~~~v~~~~~~~~~~~~~g~~~~ 115 (340)
T PRK05379 79 LRDSLYNDSLWLAEVQAAVAEHAGADARIGLIGHEKD 115 (340)
T ss_pred CCCCCcChHHHHHHHHHHHHhccCCCCcEEEECCcCC
Confidence 2221 122222 222 5789999997773
No 43
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=99.38 E-value=1.2e-12 Score=99.38 Aligned_cols=85 Identities=18% Similarity=0.128 Sum_probs=68.9
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCccc-cc-CCCC-CCcCHHHHHHHHhhccCCCEEEEcCCC---CC
Q psy11152 8 ATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEI-SK-HKGP-PVFTQQERYKMVRGIKWVDEVVEGAPY---VT 81 (112)
Q Consensus 8 ~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~-~~-~k~~-~i~s~~eR~~~l~~~~~vd~vi~~~~~---~~ 81 (112)
.|.++|+ +|.||++||++|++.++.++|++..+|.. .+ ...+ .+.+.++|.++++++ |||.+ |+|+ +.
T Consensus 26 ~V~TmG~---LH~GH~~LI~~a~~~a~~vVvtf~~nP~qf~~~ed~~~y~~t~e~d~~ll~~~-GvD~v--F~p~~~~m~ 99 (277)
T cd00560 26 FVPTMGA---LHEGHLSLVRRARAENDVVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEEA-GVDLL--FAPSVEEMY 99 (277)
T ss_pred EEECCCc---ccHHHHHHHHHHHHhCCEEEEEecCChhhcCCcccccccCCCHHHHHHHHHHC-CCCEE--ECCCHHHcC
Confidence 4578999 99999999999999999899999988853 22 2212 688999999999999 89988 5544 66
Q ss_pred HHHHH----HhcCCCEEEEcC
Q psy11152 82 TLETL----DAYDCDFCVHGA 98 (112)
Q Consensus 82 ~~~fi----~~l~~~~iv~G~ 98 (112)
|++|+ ..++++.+++|.
T Consensus 100 p~~f~~~~v~~~~~~~il~G~ 120 (277)
T cd00560 100 PEGLFSTFVDVGPLSEVLEGA 120 (277)
T ss_pred CCCCceEEEecCCCceEEecC
Confidence 77765 347899999999
No 44
>PRK13671 hypothetical protein; Provisional
Probab=99.38 E-value=6.4e-12 Score=96.20 Aligned_cols=88 Identities=19% Similarity=0.253 Sum_probs=68.4
Q ss_pred EEEecccCcCCHHHHHHHHHHHHc--CCeEEEEEecCcccccCCCC-CCcCHHHHHHHHhhccCCCEEEEcC-CC--CCH
Q psy11152 9 TSLQSNYDMVHFGHANNLRQAKEL--GNYLVVGVHTDEEISKHKGP-PVFTQQERYKMVRGIKWVDEVVEGA-PY--VTT 82 (112)
Q Consensus 9 v~~~G~FD~~H~GH~~ll~~a~~~--~~~lvv~v~~d~~~~~~k~~-~i~s~~eR~~~l~~~~~vd~vi~~~-~~--~~~ 82 (112)
+-++-.|||||.||+.++++|++. ++.+++.++.++. .|+. .+++.++|.+|+..+ |+|.||+.. .+ .++
T Consensus 3 ~GIIaeFNP~H~GHl~~~~~a~~~~~~d~vi~vpSg~~~---qrg~pa~~~~~~R~~ma~~~-G~DLViELP~~~a~~sA 78 (298)
T PRK13671 3 IGIIAEYNPFHNGHIYQINYIKNKFPNEKIIVILSGKYT---QRGEIAVASFEKRKKIALKY-GVDKVIKLPFEYATQAA 78 (298)
T ss_pred eeEEeeeCCccHHHHHHHHHHHHhcCCCEEEEEECcCCC---CCCCCCCCCHHHHHHHHHHc-CCCEEEeccHHHHhhch
Confidence 345569999999999999999997 4677776666652 3443 677999999999999 899999631 11 355
Q ss_pred HHH-------HHhcCCCEEEEcCCC
Q psy11152 83 LET-------LDAYDCDFCVHGALE 100 (112)
Q Consensus 83 ~~f-------i~~l~~~~iv~G~D~ 100 (112)
+.| +.++++|.++.|.++
T Consensus 79 e~FA~gaV~lL~~lgvd~l~FGsE~ 103 (298)
T PRK13671 79 HIFAKGAIKKLNKEKIDKLIFGSES 103 (298)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCC
Confidence 556 468899999999987
No 45
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.36 E-value=4e-12 Score=92.00 Aligned_cols=91 Identities=19% Similarity=0.110 Sum_probs=62.2
Q ss_pred ceEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEecCcccccCCCC-CCcCHHHHHHHHhhc-cCCCEEEEcCCC--
Q psy11152 6 LLATSLQSNYDMVHFGHANNLRQAKELG--NYLVVGVHTDEEISKHKGP-PVFTQQERYKMVRGI-KWVDEVVEGAPY-- 79 (112)
Q Consensus 6 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~--~~lvv~v~~d~~~~~~k~~-~i~s~~eR~~~l~~~-~~vd~vi~~~~~-- 79 (112)
+++++++|+|||+|.||+.++++|.+.. +.+++.+++.+. .|.. .+++.++|++|++.. ++.+.+.+.+-+
T Consensus 4 ~~i~i~gGsFdP~H~GH~~l~~~a~~~~~~d~v~~~p~~~~~---~k~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~ 80 (203)
T PRK00071 4 KRIGLFGGTFDPPHYGHLAIAEEAAERLGLDEVWFLPNPGPP---HKPQKPLAPLEHRLAMLELAIADNPRFSVSDIELE 80 (203)
T ss_pred cEEEEEeeCCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCC---CCCCCCCCCHHHHHHHHHHHhcCCCceEEeHHHHh
Confidence 4688999999999999999999999876 666666665442 2323 588999999999754 556655542111
Q ss_pred ----CCHHH---HHHhcCCC---EEEEcCC
Q psy11152 80 ----VTTLE---TLDAYDCD---FCVHGAL 99 (112)
Q Consensus 80 ----~~~~~---fi~~l~~~---~iv~G~D 99 (112)
.-+.+ .+++..++ ++++|.|
T Consensus 81 ~~~~syT~~tl~~l~~~~p~~~~~fiiG~D 110 (203)
T PRK00071 81 RPGPSYTIDTLRELRARYPDVELVFIIGAD 110 (203)
T ss_pred CCCCCCHHHHHHHHHHHCCCCcEEEEEcHH
Confidence 11222 23333344 8999988
No 46
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=99.35 E-value=2.8e-12 Score=90.04 Aligned_cols=94 Identities=14% Similarity=0.092 Sum_probs=64.9
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhc-cCCCEEEE--cC-CCCC--
Q psy11152 8 ATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGI-KWVDEVVE--GA-PYVT-- 81 (112)
Q Consensus 8 ~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~-~~vd~vi~--~~-~~~~-- 81 (112)
+++++|+|||+|.||+.++++|.+.+|+++|++.+.+.... ....+|.++|++|++.. +..+.+.+ .+ ++..
T Consensus 1 igl~~G~F~P~H~GHl~li~~a~~~~d~v~vi~~~~~~~~~--~~~~~~~~~R~~mi~~a~~~~~~~~v~~~~~~d~~~~ 78 (158)
T cd02167 1 IGIVFGKFAPLHTGHVYLIYKALSQVDELLIIVGSDDTRDD--ARTGLPLEKRLRWLREIFPDQENIVVHTLNEPDIPEY 78 (158)
T ss_pred CEEEeeccCCCCHHHHHHHHHHHHHCCEEEEEECCCCcccc--cCCCCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCCC
Confidence 36889999999999999999999999999999987663211 12467999999999865 44333333 11 1111
Q ss_pred ---HHHH---HH----h-c--CCCEEEEcCCCCCC
Q psy11152 82 ---TLET---LD----A-Y--DCDFCVHGALEVLV 103 (112)
Q Consensus 82 ---~~~f---i~----~-l--~~~~iv~G~D~~f~ 103 (112)
..++ ++ + . +++.++.|.++...
T Consensus 79 ~~~w~~w~~~v~~~v~~~~~~~~~~vf~~~~~~~~ 113 (158)
T cd02167 79 PNGWDIWSNRVKTLIAENTRCRPDIVFTAEEYEAA 113 (158)
T ss_pred chhHHHHHHHHHHHHhhhcCCCCCEEEEccCcchh
Confidence 2222 22 1 1 77899999887433
No 47
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=99.33 E-value=1.8e-12 Score=98.52 Aligned_cols=86 Identities=15% Similarity=0.100 Sum_probs=67.3
Q ss_pred EEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCccc-c-cCCCC-CCcCHHHHHHHHhhccCCCEEEEcCCC-CCHHH
Q psy11152 9 TSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEI-S-KHKGP-PVFTQQERYKMVRGIKWVDEVVEGAPY-VTTLE 84 (112)
Q Consensus 9 v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~-~-~~k~~-~i~s~~eR~~~l~~~~~vd~vi~~~~~-~~~~~ 84 (112)
|.++|+ +|.||+++|++|++.++.+++++.++|.. . +...+ .++|.++|.++++++ |||.++..+.. +.|++
T Consensus 27 v~tmG~---lH~GH~~Li~~a~~~a~~vVvTf~~~P~qf~~~~~~~~~~~t~e~~~~ll~~~-GvD~v~~p~~~~myp~~ 102 (281)
T PRK00380 27 VPTMGA---LHEGHLSLVREARAEADIVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEAA-GVDLVFAPSVEEMYPQG 102 (281)
T ss_pred EEccCc---eeHHHHHHHHHHHHhCCEEEEeCCCCHHHhCCCccccccCCCHHHHHHHHHHc-CCCEEEeCCHHHCCCcc
Confidence 456777 99999999999999998888898888742 2 12222 689999999999999 89999874322 67788
Q ss_pred HHHhc---CCCEEEEcC
Q psy11152 85 TLDAY---DCDFCVHGA 98 (112)
Q Consensus 85 fi~~l---~~~~iv~G~ 98 (112)
|.... ++..+++|.
T Consensus 103 f~~~i~~~~~~~vl~G~ 119 (281)
T PRK00380 103 LQTYVSVPGLSDVLEGA 119 (281)
T ss_pred ceeEEEcccccccccCC
Confidence 86432 377999999
No 48
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=99.31 E-value=3.2e-12 Score=88.94 Aligned_cols=62 Identities=24% Similarity=0.423 Sum_probs=54.2
Q ss_pred CceEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhh
Q psy11152 5 NLLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRG 66 (112)
Q Consensus 5 ~~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~ 66 (112)
+.+.++++|+||.+|.||..||+.|.+.++.+++|+++|+....++...+.+++.|.+-|.+
T Consensus 4 kfm~vavGGTFd~LH~GHk~LL~~A~~~G~~v~IGlTsDe~~k~~k~~~i~p~~~R~~~l~~ 65 (158)
T COG1019 4 KFMKVAVGGTFDRLHDGHKKLLEVAFEIGDRVTIGLTSDELAKKKKKEKIEPYEVRLRNLRN 65 (158)
T ss_pred cceEEEecccchhhhhhHHHHHHHHHHhCCeEEEEEccHHHHHHhccccCCcHHHHHHHHHH
Confidence 34678999999999999999999999999999999999998765444589999999986654
No 49
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=99.30 E-value=4.3e-11 Score=85.29 Aligned_cols=90 Identities=19% Similarity=0.208 Sum_probs=59.9
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhc-c--CC--CEEEE--cCCCC
Q psy11152 8 ATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGI-K--WV--DEVVE--GAPYV 80 (112)
Q Consensus 8 ~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~-~--~v--d~vi~--~~~~~ 80 (112)
+++++|.|||+|.||+.++++|.+.++++++++.+.... .+....++.++|.+|++.. . ++ +.+.+ .++..
T Consensus 2 ~gl~~G~F~P~H~GHl~~i~~a~~~~d~v~v~i~s~~~~--~~~~~p~~~~~R~~mi~~a~~~~~~~~~~~~~~pi~D~~ 79 (174)
T PRK01153 2 RALFIGRFQPFHKGHLEVIKWILEEVDELIIGIGSAQES--HTLKNPFTAGERILMIRKALEEEGIDLSRYYIIPIPDIE 79 (174)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHhCCEEEEEecCCCCC--CCCCCCCCHHHHHHHHHHHHhcCCCCcceeeEecCCCcc
Confidence 589999999999999999999999999999988653211 1112347889999999843 2 23 12332 22212
Q ss_pred CHHHHH---Hhc--CCCEEEEcCC
Q psy11152 81 TTLETL---DAY--DCDFCVHGAL 99 (112)
Q Consensus 81 ~~~~fi---~~l--~~~~iv~G~D 99 (112)
..+.+. ++. .+|.++.|..
T Consensus 80 ~~~~w~~~v~~~~~~~d~v~~~~~ 103 (174)
T PRK01153 80 FNSIWVSHVESYTPPFDVVYTGNP 103 (174)
T ss_pred hHHHHHHHHHHhCCCCCEEEECCh
Confidence 333343 322 6688888864
No 50
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=99.30 E-value=5.4e-12 Score=82.54 Aligned_cols=58 Identities=17% Similarity=0.239 Sum_probs=49.5
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhc
Q psy11152 8 ATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGI 67 (112)
Q Consensus 8 ~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~ 67 (112)
+++++|+||++|.||+.++++|.+.++.+++++..++.... + ..+.+.++|.++++++
T Consensus 1 ~~~~~G~Fdp~H~GH~~l~~~a~~~~d~~i~~i~~~~~~~~-~-~~~~~~~~R~~~l~~~ 58 (105)
T cd02156 1 KARFPGEPGYLHIGHAKLICRAKGIADQCVVRIDDNPPVKV-W-QDPHELEERKESIEED 58 (105)
T ss_pred CEEeCCCCCCCCHHHHHHHHHHHHhCCcEEEEEcCCCcccc-c-CChHHHHHHHHHHHHH
Confidence 36899999999999999999999999989999988775421 1 2589999999999987
No 51
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=99.28 E-value=3.2e-11 Score=95.51 Aligned_cols=95 Identities=12% Similarity=-0.005 Sum_probs=66.7
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCccc-----ccCCCCCCcCHHHHHHHHhhc-cCCCEEEE--cCC
Q psy11152 7 LATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEI-----SKHKGPPVFTQQERYKMVRGI-KWVDEVVE--GAP 78 (112)
Q Consensus 7 ~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~-----~~~k~~~i~s~~eR~~~l~~~-~~vd~vi~--~~~ 78 (112)
++++++|+|||+|.||+.+|++|.+.+++++|++.+++.. .+.+....+|.++|.+++++. +..++|.+ ++.
T Consensus 53 ~~~v~~G~FdP~H~GH~~lI~~A~~~~d~l~v~v~~~~~~~~~~~~~~~~~~~~s~~~R~~~l~~~~~~~~~v~v~~~~~ 132 (399)
T PRK08099 53 KIGVVFGKFYPLHTGHIYLIQRACSQVDELHIIICYDDERDRKLFEDSAMSQQPTVSDRLRWLLQTFKYQKNIKIHAFNE 132 (399)
T ss_pred cEEEEEEecCCCCHHHHHHHHHHHHHCCeeEEEEEccCCcchhhcccccccCCCCHHHHHHHHHHHhCCCCCEEEEecCC
Confidence 5889999999999999999999999999988888765421 111223688999999999875 45444443 333
Q ss_pred C----C--CHHHH-------HHh--cCCCEEEEcCCCC
Q psy11152 79 Y----V--TTLET-------LDA--YDCDFCVHGALEV 101 (112)
Q Consensus 79 ~----~--~~~~f-------i~~--l~~~~iv~G~D~~ 101 (112)
. . ....+ +.. .+++.++.|+++.
T Consensus 133 ~~~~~~~~~~~~w~~~v~~~v~~~~~~~~~vf~~~~~d 170 (399)
T PRK08099 133 EGMEPYPHGWDVWSNGIKAFMAEKGIQPDVIYTSEEQD 170 (399)
T ss_pred CCCCCCCccHHHHHHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 1 1 11222 222 3689999998874
No 52
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.
Probab=99.26 E-value=2.4e-11 Score=87.16 Aligned_cols=90 Identities=16% Similarity=0.164 Sum_probs=61.2
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEecCcccccCCCCCCcCHHHHHHHHhhc-cCCCEEEEcCC------
Q psy11152 8 ATSLQSNYDMVHFGHANNLRQAKELG--NYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGI-KWVDEVVEGAP------ 78 (112)
Q Consensus 8 ~v~~~G~FD~~H~GH~~ll~~a~~~~--~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~-~~vd~vi~~~~------ 78 (112)
++++.|+|||+|.||+.+++.|.+.+ +++++.++.++. .|+....+.++|+++++.+ +....+.+.+.
T Consensus 1 i~i~gGsFdP~H~GH~~~~~~a~~~~~~d~v~~~~~~~~~---~k~~~~~~~~~R~~m~~~~~~~~~~i~v~~~e~~~~~ 77 (192)
T cd02165 1 IALFGGSFDPPHLGHLAIAEEALEELGLDRVLLLPSANPP---HKPPKPASFEHRLEMLKLAIEDNPKFEVSDIEIKRDG 77 (192)
T ss_pred CeEEeeCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCC---CCCCCCCCHHHHHHHHHHHHcCCCCEEEeHHHHhCCC
Confidence 46899999999999999999999998 788777665442 2334678999999999865 33444554111
Q ss_pred CCCHHH---HHHhcC--CC-EEEEcCCC
Q psy11152 79 YVTTLE---TLDAYD--CD-FCVHGALE 100 (112)
Q Consensus 79 ~~~~~~---fi~~l~--~~-~iv~G~D~ 100 (112)
...+.+ .+++.. .+ ++++|.|-
T Consensus 78 ~~~t~~tl~~l~~~~p~~~~~~liG~D~ 105 (192)
T cd02165 78 PSYTIDTLEELRERYPNAELYFIIGSDN 105 (192)
T ss_pred CCCHHHHHHHHHHhccCCCEEEEEcHHH
Confidence 112222 233332 33 88899884
No 53
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=99.26 E-value=1.4e-11 Score=88.24 Aligned_cols=91 Identities=13% Similarity=0.064 Sum_probs=62.5
Q ss_pred EEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhc-c--CCC--EEEE--cCCCC-
Q psy11152 9 TSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGI-K--WVD--EVVE--GAPYV- 80 (112)
Q Consensus 9 v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~-~--~vd--~vi~--~~~~~- 80 (112)
++++|+|||+|.||+.++++|.+.+++++|++.+.+.... + ...+|.++|++|++.. . ++| .+.+ ..+..
T Consensus 2 ~l~~GrF~P~H~GHl~~i~~a~~~~~~vii~i~s~~~~~~-~-~~p~~~~eR~~mi~~~~~~~~~~~~rv~i~pi~D~~~ 79 (181)
T cd02168 2 LVYIGRFQPFHNGHLAVVLIALEKAKKVIILIGSARTARN-I-KNPWTSEEREVMIEAALSDAGADLARVHFRPLRDHLY 79 (181)
T ss_pred eEEeeccCCCCHHHHHHHHHHHHHCCeEEEEeCCCCCCCC-C-CCCcCHHHHHHHHHHHHhccCCCcceEEEEecCCCCC
Confidence 6899999999999999999999999999999877543221 2 2458999999999874 2 233 3333 32211
Q ss_pred CHHHH---HH-------hcCCCEEEEcCCCC
Q psy11152 81 TTLET---LD-------AYDCDFCVHGALEV 101 (112)
Q Consensus 81 ~~~~f---i~-------~l~~~~iv~G~D~~ 101 (112)
...-+ ++ .-+++.+++|.|+.
T Consensus 80 ~~~~W~~~v~~~v~~~~~~~~~i~~~g~~kd 110 (181)
T cd02168 80 SDNLWLAEVQQQVLEIAGGSASVGLVGHRKD 110 (181)
T ss_pred ChHHHHHHHHHhChHhhCCCCcEEEeCCccC
Confidence 22222 22 12568899997774
No 54
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=99.23 E-value=3.8e-11 Score=87.19 Aligned_cols=93 Identities=16% Similarity=0.106 Sum_probs=63.6
Q ss_pred CceEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEecCcccccCCC-CCCcCHHHHHHHHhh-ccCCCEEEEcCCC-
Q psy11152 5 NLLATSLQSNYDMVHFGHANNLRQAKELG--NYLVVGVHTDEEISKHKG-PPVFTQQERYKMVRG-IKWVDEVVEGAPY- 79 (112)
Q Consensus 5 ~~~~v~~~G~FD~~H~GH~~ll~~a~~~~--~~lvv~v~~d~~~~~~k~-~~i~s~~eR~~~l~~-~~~vd~vi~~~~~- 79 (112)
.+++++++|+|||+|.||+.+.++|.+.. +++++.++..+ +.|. ....|.++|++|++- +++.+..-+.+-+
T Consensus 2 ~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~vi~~ps~~~---p~k~~~~~a~~~~R~~Ml~la~~~~~~~~v~~~e~ 78 (197)
T COG1057 2 MKKIALFGGSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPVP---PHKKKKELASAEHRLAMLELAIEDNPRFEVSDREI 78 (197)
T ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEecCCCC---CCCCCccCCCHHHHHHHHHHHHhcCCCcceeHHHH
Confidence 46789999999999999999999999885 45555555443 2333 368999999999974 4555552221000
Q ss_pred ---------CCHHHHHHhcCCC---EEEEcCCC
Q psy11152 80 ---------VTTLETLDAYDCD---FCVHGALE 100 (112)
Q Consensus 80 ---------~~~~~fi~~l~~~---~iv~G~D~ 100 (112)
++-+.|-++++++ ++++|.|-
T Consensus 79 ~r~g~sYT~dTl~~~~~~~~p~~~~~fIiGaD~ 111 (197)
T COG1057 79 KRGGPSYTIDTLEHLRQEYGPDVELYFIIGADN 111 (197)
T ss_pred HcCCCcchHHHHHHHHHHhCCCCcEEEEEehHH
Confidence 1222333478888 58999883
No 55
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=99.20 E-value=6.9e-11 Score=85.75 Aligned_cols=59 Identities=15% Similarity=0.224 Sum_probs=49.4
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhc
Q psy11152 7 LATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGI 67 (112)
Q Consensus 7 ~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~ 67 (112)
..++++|.|.|||+||+++|++|++.|++++|++.+.......+ -.+|..||..|+...
T Consensus 5 d~~v~iGRFQPfH~GHl~~I~~al~~~devII~IGSA~~s~t~~--NPFTa~ER~~MI~~a 63 (196)
T PRK13793 5 DYLVFIGRFQPFHLAHMQTIEIALQQSRYVILALGSAQMERNIK--NPFLAIEREQMILSN 63 (196)
T ss_pred eEEEEEecCCCCcHHHHHHHHHHHHhCCEEEEEEccCCCCCCCC--CCCCHHHHHHHHHHh
Confidence 57899999999999999999999999999999999854322222 258999999999765
No 56
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=99.17 E-value=8.7e-11 Score=90.74 Aligned_cols=64 Identities=19% Similarity=0.105 Sum_probs=51.7
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhc-cCCCE
Q psy11152 7 LATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGI-KWVDE 72 (112)
Q Consensus 7 ~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~-~~vd~ 72 (112)
++++++|+|||+|.||+.++++|.+.+++++|.+...+.. .+..+..|.++|+++++.. +..+.
T Consensus 2 ~i~i~~GsFdP~H~GHl~ii~~a~~~~d~v~v~~~~~~~~--~~~~~~~~~~~R~~~l~~~~~~~~~ 66 (325)
T TIGR01526 2 TIGVVFGKFYPLHTGHIYLIYEAFSKVDELHIVVGSLFYD--SKAKRPPPVQDRLRWLREIFKYQKN 66 (325)
T ss_pred cEEEEeeccCCCCHHHHHHHHHHHHHCCEEEEEECCCCcC--ccCCCCCCHHHHHHHHHHHhccCCC
Confidence 5889999999999999999999999999998888763311 1224678999999999754 55655
No 57
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=99.14 E-value=4.3e-10 Score=87.32 Aligned_cols=62 Identities=21% Similarity=0.242 Sum_probs=50.9
Q ss_pred ceEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhc-cCCCEEE
Q psy11152 6 LLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGI-KWVDEVV 74 (112)
Q Consensus 6 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~-~~vd~vi 74 (112)
.+++++.|+|||+|+||+.++++|.+.+|.++|.|..+ + ..++|.++|+++++.. +..++|.
T Consensus 139 ~~i~~~~g~fdP~t~GH~~li~~A~~~~d~~~v~v~~~------~-~~~f~~~~R~~~v~~~~~~~~nv~ 201 (332)
T TIGR00124 139 NKIGSIVMNANPFTNGHRYLIEQAARQCDWLHLFVVKE------D-ASLFSYDERFALVKQGIQDLSNVT 201 (332)
T ss_pred CcEEEEEeCcCCCchHHHHHHHHHHHHCCEEEEEEEeC------C-CCCCCHHHHHHHHHHHhcCCCCEE
Confidence 47899999999999999999999999999988888532 1 3589999999999753 4555444
No 58
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.14 E-value=3.6e-10 Score=84.41 Aligned_cols=57 Identities=23% Similarity=0.206 Sum_probs=45.6
Q ss_pred ceEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEecCcccccCCCCCCcCHHHHHHHHhh
Q psy11152 6 LLATSLQSNYDMVHFGHANNLRQAKELG--NYLVVGVHTDEEISKHKGPPVFTQQERYKMVRG 66 (112)
Q Consensus 6 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~--~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~ 66 (112)
+++++++|+|||+|.||+.+.++|.+.. +++++..+.++ ..| ....+.++|++|++.
T Consensus 22 ~~IgifGGSFdPiH~GHl~ia~~~~~~l~ld~v~~iP~~~p---p~K-~~~~~~~~Rl~M~~l 80 (243)
T PRK06973 22 RRIGILGGTFDPIHDGHLALARRFADVLDLTELVLIPAGQP---WQK-ADVSAAEHRLAMTRA 80 (243)
T ss_pred ceEEEECCCCCCCcHHHHHHHHHHHHHcCCCEEEEEECCcC---CCC-CCCCCHHHHHHHHHH
Confidence 4688999999999999999999999874 66766665544 233 456799999999974
No 59
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.
Probab=99.10 E-value=2.4e-10 Score=82.20 Aligned_cols=63 Identities=16% Similarity=0.214 Sum_probs=45.8
Q ss_pred EEecccCcCCHHHHHHHHHHHHcC--CeEEEEEecCcccccCCC-CCCcCHHHHHHHHh-hccCCCEEEE
Q psy11152 10 SLQSNYDMVHFGHANNLRQAKELG--NYLVVGVHTDEEISKHKG-PPVFTQQERYKMVR-GIKWVDEVVE 75 (112)
Q Consensus 10 ~~~G~FD~~H~GH~~ll~~a~~~~--~~lvv~v~~d~~~~~~k~-~~i~s~~eR~~~l~-~~~~vd~vi~ 75 (112)
+++|+|||+|.||+.++++|.+.. +++.+..+..+. .|. ....+.++|++|++ ++++.+.+.+
T Consensus 1 i~gGsFdP~H~GHl~l~~~a~~~~~~d~v~~~p~~~~p---~k~~~~~~~~~~R~~m~~~a~~~~~~~~v 67 (193)
T TIGR00482 1 LFGGSFDPIHYGHLLLAEEALDHLDLDKVIFVPTANPP---HKKTYEAASSHHRLAMLKLAIEDNPKFEV 67 (193)
T ss_pred CccccCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCC---CCCCCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 357999999999999999999885 566666555442 232 24579999999998 4455555444
No 60
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=99.07 E-value=5.6e-10 Score=86.61 Aligned_cols=92 Identities=14% Similarity=0.125 Sum_probs=59.7
Q ss_pred ceEEEEecccCcCCHHHHHHHHHHHHc--CCeEEEEEecCcccccCCCC-CCcCHHHHHHHHhh-ccCCCEEEEcCCC--
Q psy11152 6 LLATSLQSNYDMVHFGHANNLRQAKEL--GNYLVVGVHTDEEISKHKGP-PVFTQQERYKMVRG-IKWVDEVVEGAPY-- 79 (112)
Q Consensus 6 ~~~v~~~G~FD~~H~GH~~ll~~a~~~--~~~lvv~v~~d~~~~~~k~~-~i~s~~eR~~~l~~-~~~vd~vi~~~~~-- 79 (112)
|++++++|+|||+|.||+.++++|.+. .+++++.++..+ +.|.. ...+.++|++|++. +++.+.+.+.+-+
T Consensus 1 m~i~i~gGsFdP~H~GHl~la~~a~~~~~~d~v~~~p~~~~---p~K~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~ 77 (342)
T PRK07152 1 MKIAIFGGSFDPIHKGHINIAKKAIKKLKLDKLFFVPTYIN---PFKKKQKASNGEHRLNMLKLALKNLPKMEVSDFEIK 77 (342)
T ss_pred CeEEEEeeCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCCC---CCCCCCCCCCHHHHHHHHHHHHhhCCCeEEeHHHHh
Confidence 358899999999999999999999987 467777665543 23333 45556999999964 3444554441100
Q ss_pred ----C---CHHHHHHhcCCC---EEEEcCCC
Q psy11152 80 ----V---TTLETLDAYDCD---FCVHGALE 100 (112)
Q Consensus 80 ----~---~~~~fi~~l~~~---~iv~G~D~ 100 (112)
. .+.+.+++.-++ ++++|.|.
T Consensus 78 ~~~~syt~~tl~~l~~~~p~~~~~~iiG~D~ 108 (342)
T PRK07152 78 RQNVSYTIDTIKYFKKKYPNDEIYFIIGSDN 108 (342)
T ss_pred CCCCCcHHHHHHHHHHhCCCCcEEEEecHHH
Confidence 1 122233433344 88999884
No 61
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=99.04 E-value=5.3e-10 Score=79.61 Aligned_cols=60 Identities=22% Similarity=0.303 Sum_probs=49.9
Q ss_pred CceEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhh
Q psy11152 5 NLLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRG 66 (112)
Q Consensus 5 ~~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~ 66 (112)
++..++++|.|.|+|.||+++|+.|.+..|+|+|++.++......+ -.+|..||..++++
T Consensus 2 ~~~rgv~~GRFqP~H~GHl~vi~~al~~vDeliI~iGSa~~~~t~~--nPfTagER~~mi~~ 61 (172)
T COG1056 2 RMKRGVYFGRFQPLHTGHLYVIKRALSKVDELIIVIGSAQESHTLK--NPFTAGERIPMIRD 61 (172)
T ss_pred CceEEEEEeccCCccHhHHHHHHHHHHhCCEEEEEEccCccccccc--CCCCccchhHHHHH
Confidence 4678999999999999999999999999999999999876432222 25788999998873
No 62
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=98.98 E-value=1.8e-09 Score=76.79 Aligned_cols=56 Identities=9% Similarity=0.156 Sum_probs=43.0
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhc
Q psy11152 7 LATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGI 67 (112)
Q Consensus 7 ~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~ 67 (112)
++++++|+|||+|.||+.+++++ +..+++++.++... +.+. +..+.++|++|++..
T Consensus 3 ~i~ifGGSFDP~H~GHl~ia~~~-~~~d~v~~vP~~~~---~~~k-~~~~~~~R~~M~~~a 58 (174)
T PRK08887 3 KIAVFGSAFNPPSLGHKSVIESL-SHFDLVLLVPSIAH---AWGK-TMLDYETRCQLVDAF 58 (174)
T ss_pred eEEEeCCCCCCCCHHHHHHHHHh-hcCCEEEEEECCCC---cccC-CCCCHHHHHHHHHHH
Confidence 58899999999999999999985 45687777655421 1122 567999999999854
No 63
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=98.89 E-value=4.4e-09 Score=83.24 Aligned_cols=92 Identities=21% Similarity=0.317 Sum_probs=40.0
Q ss_pred ceEEEEecccCcCCHHHHHHHHHHHHcC-CeEEEEEecCcccccCCCC-CCcCHHHHHHHHhhccCCCEEEEcC-CC--C
Q psy11152 6 LLATSLQSNYDMVHFGHANNLRQAKELG-NYLVVGVHTDEEISKHKGP-PVFTQQERYKMVRGIKWVDEVVEGA-PY--V 80 (112)
Q Consensus 6 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~-~~lvv~v~~d~~~~~~k~~-~i~s~~eR~~~l~~~~~vd~vi~~~-~~--~ 80 (112)
|+++-++-=|.|||.||+..|+++++.. ...+|+|.+..++. +|. .+++...|.++.-.+ |+|.|++.. .+ .
T Consensus 1 Mk~~GIIaEYNPFHnGH~y~i~~~k~~~~ad~ii~vMSGnFvQ--RGEPAi~dKw~RA~~AL~~-GaDLViELP~~~a~q 77 (388)
T PF05636_consen 1 MKVVGIIAEYNPFHNGHLYQIEQAKKITGADVIIAVMSGNFVQ--RGEPAIIDKWTRAEMALKN-GADLVIELPVVYALQ 77 (388)
T ss_dssp ------E---TT--HHHHHHHHHHH---TSSEEEEEE--TTSB--TSSB-SS-HHHHHHHHHHH-T-SEEEE---G----
T ss_pred CCCCCeEEeECCccHHHHHHHHHHhccCCCCEEEEEECCCccc--CCCeeeCCHHHHHHHHHHc-CCCEEEECCCccccc
Confidence 3456666789999999999999999873 33566676666654 344 799999999999999 899999831 11 3
Q ss_pred CHHHH-------HHhcCCCEEEEcCCC
Q psy11152 81 TTLET-------LDAYDCDFCVHGALE 100 (112)
Q Consensus 81 ~~~~f-------i~~l~~~~iv~G~D~ 100 (112)
+++.| +.++++|+++.|.+.
T Consensus 78 sA~~FA~gaV~lL~~lgvd~l~FGsE~ 104 (388)
T PF05636_consen 78 SAEYFARGAVSLLNALGVDYLSFGSES 104 (388)
T ss_dssp ---------------------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 45555 367899999999775
No 64
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=98.85 E-value=1e-08 Score=78.14 Aligned_cols=64 Identities=19% Similarity=0.169 Sum_probs=53.2
Q ss_pred EEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCccc-cc-CCCC-CCcCHHHHHHHHhhccCCCEEEEc
Q psy11152 9 TSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEI-SK-HKGP-PVFTQQERYKMVRGIKWVDEVVEG 76 (112)
Q Consensus 9 v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~-~~-~k~~-~i~s~~eR~~~l~~~~~vd~vi~~ 76 (112)
|.++|+ +|.||++||++|++.++.+++++..+|.. .+ .... .+.|.++|.++++++ |||.++..
T Consensus 27 VpTmG~---LH~GH~~LI~~a~~~a~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~-GVD~vf~P 93 (282)
T TIGR00018 27 VPTMGN---LHDGHMSLIDRAVAENDVVVVSIFVNPMQFGPNEDLEAYPRTLEEDCALLEKL-GVDVVFAP 93 (282)
T ss_pred EECCCc---ccHHHHHHHHHHHHhCCeEEEEecCChHHhCCccccccCCCCHHHHHHHHHHc-CCCEEECC
Confidence 568999 99999999999999999889999888853 22 2212 688999999999999 89988763
No 65
>PLN02660 pantoate--beta-alanine ligase
Probab=98.83 E-value=1.3e-08 Score=77.63 Aligned_cols=65 Identities=15% Similarity=0.157 Sum_probs=53.8
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCccc-ccCCC-C-CCcCHHHHHHHHhhccCCCEEEEc
Q psy11152 8 ATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEI-SKHKG-P-PVFTQQERYKMVRGIKWVDEVVEG 76 (112)
Q Consensus 8 ~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~-~~~k~-~-~i~s~~eR~~~l~~~~~vd~vi~~ 76 (112)
-|.++|+ +|.||++||++|++.++.+++++..+|.. .+... . .+.|.++|.++++++ |||.++..
T Consensus 25 fVpTmG~---LH~GH~~LI~~a~~~a~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~-GVD~vf~P 92 (284)
T PLN02660 25 LVPTMGY---LHEGHLSLVRAARARADVVVVSIYVNPGQFAPGEDLDTYPRDFDGDLRKLAAL-GVDAVFNP 92 (284)
T ss_pred EEEcCch---hhHHHHHHHHHHHHhCCEEEEEEeCChHHcCCccccccCCCCHHHHHHHHHHc-CCCEEECC
Confidence 3688999 99999999999999999889999888853 22122 2 689999999999999 89988753
No 66
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.
Probab=98.80 E-value=2.2e-08 Score=73.92 Aligned_cols=66 Identities=15% Similarity=0.075 Sum_probs=43.1
Q ss_pred EEEecccCcCCHHHHHHHHHHHHcCC--e-E-EEEEecCccc-ccCCCCCCcCHHHHHHHHh-hccCCCEEEE
Q psy11152 9 TSLQSNYDMVHFGHANNLRQAKELGN--Y-L-VVGVHTDEEI-SKHKGPPVFTQQERYKMVR-GIKWVDEVVE 75 (112)
Q Consensus 9 v~~~G~FD~~H~GH~~ll~~a~~~~~--~-l-vv~v~~d~~~-~~~k~~~i~s~~eR~~~l~-~~~~vd~vi~ 75 (112)
.++.|+|||+|.||+.++++|.+..+ . + ++.....|.- +..| ....+.++|++|++ ++...+.+.+
T Consensus 3 ~~~gGSFdPiH~gHl~ia~~a~~~l~~~~~~~~v~~~~~P~~~~~~k-~~~~~~~~Rl~Ml~lai~~~~~~~v 74 (225)
T cd09286 3 LLACGSFNPITNMHLRMFELARDHLHETGRYEVVGGIISPVNDAYGK-KGLASAKHRVAMCRLAVQSSDWIRV 74 (225)
T ss_pred EEeCcCcCCCcHHHHHHHHHHHHHHHhhcCceeEEEEEEeeccCCCC-CCCCCHHHHHHHHHHHHccCCCEEE
Confidence 57889999999999999999988753 2 1 2221111211 1122 45779999999997 4544555444
No 67
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=98.62 E-value=1.5e-07 Score=69.85 Aligned_cols=65 Identities=12% Similarity=0.061 Sum_probs=42.0
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcC--Ce-EEEEEecCcccccCCCCCCcCHHHHHHHHh-hccCCCE
Q psy11152 8 ATSLQSNYDMVHFGHANNLRQAKELG--NY-LVVGVHTDEEISKHKGPPVFTQQERYKMVR-GIKWVDE 72 (112)
Q Consensus 8 ~v~~~G~FD~~H~GH~~ll~~a~~~~--~~-lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~-~~~~vd~ 72 (112)
..+.+|+|||+|.||+.+++.|.+.- +. .+|.+...|.-.+.+.....+.++|++|++ ++.+...
T Consensus 24 v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v~~~~~P~~~~~~k~~~~~~~~Rl~Ml~lai~~~~~ 92 (236)
T PLN02945 24 VLVATGSFNPPTYMHLRMFELARDALMSEGYHVLGGYMSPVNDAYKKKGLASAEHRIQMCQLACEDSDF 92 (236)
T ss_pred EEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEEEEEECCCCcccccCCCCCHHHHHHHHHHHhcCCCC
Confidence 34777899999999999999888763 33 234333333211112235679999999997 4444433
No 68
>KOG3351|consensus
Probab=98.55 E-value=5.1e-08 Score=72.97 Aligned_cols=61 Identities=33% Similarity=0.398 Sum_probs=51.1
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcC-CeEEEEEecCcccccCCCC-CCcCHHHHHHHHhhc
Q psy11152 7 LATSLQSNYDMVHFGHANNLRQAKELG-NYLVVGVHTDEEISKHKGP-PVFTQQERYKMVRGI 67 (112)
Q Consensus 7 ~~v~~~G~FD~~H~GH~~ll~~a~~~~-~~lvv~v~~d~~~~~~k~~-~i~s~~eR~~~l~~~ 67 (112)
..++.+|+||-+|.||.-+|..|..++ ++++||++.++.+.++.-+ .+.+.++|.+-+.++
T Consensus 143 ~~~alGGTFDrLH~gHKvLLs~aa~la~~~lVvGV~d~elL~kK~~~Eliepie~R~~~V~~F 205 (293)
T KOG3351|consen 143 MVVALGGTFDRLHDGHKVLLSVAAELASDRLVVGVTDDELLKKKVLKELIEPIEERKEHVSNF 205 (293)
T ss_pred eeEEeccchhhhccchHHHHHHHHHHhhceEEEEecChHHHHHhHHHHHhhhHHHHHHHHHHH
Confidence 568999999999999999999999997 6899999999877543333 799999999976653
No 69
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=98.50 E-value=4.8e-07 Score=70.99 Aligned_cols=90 Identities=21% Similarity=0.182 Sum_probs=63.0
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcC-CeEEEEEecCcccccCCCC-CCcCHHHHHHHHhhccCCCEEEEcCCC--CCHH
Q psy11152 8 ATSLQSNYDMVHFGHANNLRQAKELG-NYLVVGVHTDEEISKHKGP-PVFTQQERYKMVRGIKWVDEVVEGAPY--VTTL 83 (112)
Q Consensus 8 ~v~~~G~FD~~H~GH~~ll~~a~~~~-~~lvv~v~~d~~~~~~k~~-~i~s~~eR~~~l~~~~~vd~vi~~~~~--~~~~ 83 (112)
.+=++--|||||.||+.+|++|.+++ ...++.+-+-.+.. +++ ++.+..+|.++..+. |+|.||+..-. ..+.
T Consensus 3 ~~Gii~eyNPfHnGH~y~i~~Ar~~~~~d~~i~~msgdf~q--Rgepai~~k~~r~~~aL~~-g~D~VIelP~~~s~q~a 79 (358)
T COG1323 3 SIGIIAEYNPFHNGHQYHINKAREEFKGDEIIAVMSGDFTQ--RGEPAIGHKWERKKMALEG-GADLVIELPLERSGQGA 79 (358)
T ss_pred ceeeeeecCcccccHHHHHHHHHHhccCCceEEeeecchhh--cCCCccccHHHHHhhhhhc-CceEEEEcceEEecCCC
Confidence 44455689999999999999999853 34445444444443 344 799999999999998 79999973111 2222
Q ss_pred H-H-------HHhcCCCEEEEcCCC
Q psy11152 84 E-T-------LDAYDCDFCVHGALE 100 (112)
Q Consensus 84 ~-f-------i~~l~~~~iv~G~D~ 100 (112)
+ | +..++++.|+.|..-
T Consensus 80 ~~fa~~av~il~~l~~~~i~fgse~ 104 (358)
T COG1323 80 PYFATRAVRILNALGGDDIAFGSPP 104 (358)
T ss_pred chhhHHHHHHHHhcCCCeEEEeCCC
Confidence 2 2 356889988887653
No 70
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=98.08 E-value=4.4e-05 Score=54.77 Aligned_cols=56 Identities=23% Similarity=0.334 Sum_probs=43.4
Q ss_pred cccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhh-ccCCCEEEE
Q psy11152 13 SNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRG-IKWVDEVVE 75 (112)
Q Consensus 13 G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~-~~~vd~vi~ 75 (112)
-+=.||++||+.|+++|.+.+|.+.|-+-.+. ..++|.++|++++++ ++..++|.+
T Consensus 6 MNaNPFT~GH~yLiE~Aa~~~d~l~vFVV~eD-------~S~Fpf~~R~~LVk~G~~~L~NV~V 62 (182)
T PF08218_consen 6 MNANPFTLGHRYLIEQAAKECDWLHVFVVSED-------RSLFPFADRYELVKEGTADLPNVTV 62 (182)
T ss_pred EcCCCCccHHHHHHHHHHHhCCEEEEEEEccc-------cCcCCHHHHHHHHHHHhCcCCCEEE
Confidence 46689999999999999999999866555432 247899999999974 455566554
No 71
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=97.87 E-value=0.00019 Score=57.00 Aligned_cols=92 Identities=13% Similarity=0.062 Sum_probs=62.1
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHc--CCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhc-cCC---CEEEE-cCCC
Q psy11152 7 LATSLQSNYDMVHFGHANNLRQAKEL--GNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGI-KWV---DEVVE-GAPY 79 (112)
Q Consensus 7 ~~v~~~G~FD~~H~GH~~ll~~a~~~--~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~-~~v---d~vi~-~~~~ 79 (112)
++|++.=+|||+|+||..+++.|.+. ++.+++.....+. | +-..+.+.|+++++.+ .+. +.+++ ..+.
T Consensus 184 ~~Vvafqt~nPiHr~H~~l~~~a~e~l~~d~lll~P~~g~~----k-~~~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~ 258 (383)
T TIGR00339 184 DTVVAFQTRNPMHRAHEELTKRAARSLPNAGVLVHPLVGLT----K-PGDIPAEVRMRAYEVLKEGYPNPERVMLTFLPL 258 (383)
T ss_pred CeEEEeccCCCCchHHHHHHHHHHHHcCCCeEEEEeCCCCC----C-CCCCCHHHHHHHHHHHHhhCCCCCceEEEecch
Confidence 56788899999999999999999997 6766665544321 2 2468899999998865 222 12322 2122
Q ss_pred ----CCHHHH------HHhcCCCEEEEcCCCCCC
Q psy11152 80 ----VTTLET------LDAYDCDFCVHGALEVLV 103 (112)
Q Consensus 80 ----~~~~~f------i~~l~~~~iv~G~D~~f~ 103 (112)
-.+.+- -+++++.++++|.|..-.
T Consensus 259 em~~agpreall~Aiir~nyG~th~IiG~Dhag~ 292 (383)
T TIGR00339 259 AMRYAGPREAIWHAIIRKNYGATHFIVGRDHAGP 292 (383)
T ss_pred HhhcCCcHHHHHHHHHHHHCCCCEEEECCCCCCC
Confidence 122232 267999999999997543
No 72
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=97.74 E-value=0.00025 Score=54.65 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=49.0
Q ss_pred CCceEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhh-ccCCCEEEE
Q psy11152 4 LNLLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRG-IKWVDEVVE 75 (112)
Q Consensus 4 ~~~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~-~~~vd~vi~ 75 (112)
...+++.+.-+=.||.+||+.|++||.+.||-+-+-+.++. ..++|.++|.+++++ +.++++|.+
T Consensus 143 ~gkkIgaIVMNANPFTLGH~YLVEqAaaqcDwlHLFvV~eD-------~S~f~y~~R~~Lv~~G~~~l~Nvt~ 208 (352)
T COG3053 143 PGKKIGAIVMNANPFTLGHRYLVEQAAAQCDWLHLFVVKED-------SSLFPYEDRLDLVKKGTADLPNVTV 208 (352)
T ss_pred CCCeeEEEEEeCCCccchhHHHHHHHHhhCCEEEEEEEecc-------cccCCHHHHHHHHHHhhccCCceEE
Confidence 34577888889999999999999999999998755443322 247899999999864 555655443
No 73
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.54 E-value=0.00023 Score=58.48 Aligned_cols=68 Identities=13% Similarity=0.202 Sum_probs=51.0
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCccc-ccCCC--CCCcCHHHHHHHHhhccCCCEEEEc
Q psy11152 8 ATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEI-SKHKG--PPVFTQQERYKMVRGIKWVDEVVEG 76 (112)
Q Consensus 8 ~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~-~~~k~--~~i~s~~eR~~~l~~~~~vd~vi~~ 76 (112)
++-+.-|==.+|-||+.|+++|++.++.+||++..+|.- .+... ...-++++=.+++++. |||.|+..
T Consensus 21 ~ig~VPTMG~LH~GHlsLi~~A~~~~d~vVvSIFVNP~QF~~~eD~~~YPr~~~~D~~~l~~~-gvd~vf~P 91 (512)
T PRK13477 21 TIGFVPTMGALHQGHLSLIRRARQENDVVLVSIFVNPLQFGPNEDLERYPRTLEADRELCESA-GVDAIFAP 91 (512)
T ss_pred cEEEECCCcchhHHHHHHHHHHHHhCCEEEEEEccCcccCCCchhhhhCCCCHHHHHHHHHhc-CCCEEECC
Confidence 344445667899999999999999999999999887742 22211 2456778888899999 89987653
No 74
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=97.52 E-value=0.00045 Score=52.80 Aligned_cols=62 Identities=18% Similarity=0.249 Sum_probs=39.2
Q ss_pred cccCcCCHHHHHHHHHHHHcCCeEEEEEecCccc-ccCC--CCCCcCHHHHHHHHhhccCCCEEEE
Q psy11152 13 SNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEI-SKHK--GPPVFTQQERYKMVRGIKWVDEVVE 75 (112)
Q Consensus 13 G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~-~~~k--~~~i~s~~eR~~~l~~~~~vd~vi~ 75 (112)
-|==.+|-||+.|+++|++.++.++|++..+|.- .+.. ....-+.+.=++++++. |||.++.
T Consensus 28 PTMGaLHeGHlsLi~~A~~~~d~vVVSIFVNP~QF~~~eD~~~YPR~~e~D~~ll~~~-gvD~vF~ 92 (280)
T PF02569_consen 28 PTMGALHEGHLSLIRRARAENDVVVVSIFVNPTQFGPNEDFDKYPRTLERDLELLEKA-GVDAVFA 92 (280)
T ss_dssp EE-SS--HHHHHHHHHHHHHSSEEEEEE---GGGSSTTSHTTTS---HHHHHHHHHHT-T-SEEE-
T ss_pred CCCchhhHHHHHHHHHHHhCCCEEEEEECcCcccCCCcchhhhCCCChHHHHHHHhcc-CCCEEEc
Confidence 3445679999999999999999999999888852 2211 12456677778899999 8998764
No 75
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=97.17 E-value=0.0024 Score=48.74 Aligned_cols=62 Identities=19% Similarity=0.204 Sum_probs=46.8
Q ss_pred cccCcCCHHHHHHHHHHHHcCCeEEEEEecCccc-ccCC--CCCCcCHHHHHHHHhhccCCCEEEE
Q psy11152 13 SNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEI-SKHK--GPPVFTQQERYKMVRGIKWVDEVVE 75 (112)
Q Consensus 13 G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~-~~~k--~~~i~s~~eR~~~l~~~~~vd~vi~ 75 (112)
=+--.+|-||+.|+++|++.++.+||++.-+|.- .++. ....-+++.=.+++++. |||.++.
T Consensus 28 PTMG~LH~GHlsLVr~A~~~~d~VVVSIFVNP~QFg~~EDl~~YPR~l~~D~~~le~~-gvd~vF~ 92 (285)
T COG0414 28 PTMGNLHEGHLSLVRRAKKENDVVVVSIFVNPLQFGPNEDLDRYPRTLERDLELLEKE-GVDIVFA 92 (285)
T ss_pred cCCcccchHHHHHHHHHhhcCCeEEEEEEeChhhcCCchhhhhCCCCHHHHHHHHHhc-CCcEEeC
Confidence 3666799999999999999999999998887742 1111 12456677777888888 7988774
No 76
>KOG3042|consensus
Probab=96.72 E-value=0.0036 Score=46.54 Aligned_cols=61 Identities=23% Similarity=0.291 Sum_probs=44.4
Q ss_pred ccCcCCHHHHHHHHHHHHcCCeEEEEEecCccc-cc-CC-CCCCcCHHHHHHHHhhccCCCEEEE
Q psy11152 14 NYDMVHFGHANNLRQAKELGNYLVVGVHTDEEI-SK-HK-GPPVFTQQERYKMVRGIKWVDEVVE 75 (112)
Q Consensus 14 ~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~-~~-~k-~~~i~s~~eR~~~l~~~~~vd~vi~ 75 (112)
+--.+|-||..|++++++..+..+|.+.-+|.- ++ .. ....-+..+-+..|+++ |+|.|+.
T Consensus 31 TMG~LHeGH~SLvrqs~~~~~~tVVSIfVNP~QF~pteDL~~YPrt~~~D~~~L~~L-gvdvvfa 94 (283)
T KOG3042|consen 31 TMGCLHEGHASLVRQSVKENTYTVVSIFVNPSQFAPTEDLDNYPRTLPDDIKLLESL-GVDVVFA 94 (283)
T ss_pred ccccccccHHHHHHHHHhhCceEEEEEEechhhcCChhHhhcCCccCccHHHHHHhc-CceEEEc
Confidence 556799999999999999999988888877742 11 11 11234455667889999 7987763
No 77
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=96.68 E-value=0.031 Score=44.41 Aligned_cols=93 Identities=16% Similarity=0.149 Sum_probs=60.0
Q ss_pred CceEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhc---cC-CCEEEE-cCCC
Q psy11152 5 NLLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGI---KW-VDEVVE-GAPY 79 (112)
Q Consensus 5 ~~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~---~~-vd~vi~-~~~~ 79 (112)
.-+++++.=+++++|+||-.+.+.|.+.++.|+|-.--.. .+.+ =.+.+-|.+..+.+ .+ -|.+++ +.++
T Consensus 182 gwk~vvafQTRNp~HraHEyl~K~Al~~vdgllv~plVG~---tk~g--D~~~e~rm~~ye~l~~~Yyp~dr~~Ls~~~~ 256 (397)
T COG2046 182 GWKTVVAFQTRNPPHRAHEYLQKRALEKVDGLLVHPLVGA---TKPG--DIPDEVRMEYYEALLKHYYPPDRVFLSVLPA 256 (397)
T ss_pred CCeEEEEEecCCCchHHHHHHHHHHHHhcCcEEEEeeecc---ccCC--CchHHHHHHHHHHHHHhCCCCCcEEEEecHH
Confidence 3578999999999999999999999999986444221111 0111 24566676655443 13 355555 4444
Q ss_pred ----CCHHHH-----H-HhcCCCEEEEcCCCCC
Q psy11152 80 ----VTTLET-----L-DAYDCDFCVHGALEVL 102 (112)
Q Consensus 80 ----~~~~~f-----i-~~l~~~~iv~G~D~~f 102 (112)
-.|.|- + ++++|..+++|-|+.-
T Consensus 257 aMRyagPrEa~~HaIIRkNyGcTHfIVGRDHAG 289 (397)
T COG2046 257 AMRYAGPREALLHAIIRKNYGCTHFIVGRDHAG 289 (397)
T ss_pred HhhhcCcHHHHHHHHHHhhcCCeeeeecCCCCC
Confidence 123331 2 6799999999999873
No 78
>cd00517 ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be
Probab=96.48 E-value=0.055 Score=42.70 Aligned_cols=92 Identities=14% Similarity=0.142 Sum_probs=59.0
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEecCcccccCCCCCCcCHHHHHHHHhhc--cCC--CEEEE-cCCC
Q psy11152 7 LATSLQSNYDMVHFGHANNLRQAKELG--NYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGI--KWV--DEVVE-GAPY 79 (112)
Q Consensus 7 ~~v~~~G~FD~~H~GH~~ll~~a~~~~--~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~--~~v--d~vi~-~~~~ 79 (112)
++|++.=+-+++|+||..+++.|.+.+ +.+++-..--. +.+-=.+.+-|.+..+.+ .+. +.+++ .-+.
T Consensus 157 ~~VvafqtrnP~HraHe~l~~~a~~~~~~~~lll~plvG~-----~k~~d~~~~~r~~~~~~l~~~y~~~~~~~l~~lp~ 231 (353)
T cd00517 157 RRVVAFQTRNPMHRAHEELMKRAAEKLLNDGLLLHPLVGW-----TKPGDVPDEVRMRAYEALLEEYYLPERTVLAILPL 231 (353)
T ss_pred CeEEEeecCCCCchhhHHHHHHHHHHcCCCcEEEEeccCC-----CCCCCCCHHHHHHHHHHHHHhCCCCCcEEEEeccc
Confidence 467778899999999999999999987 43333221111 112246788888877665 233 44444 2122
Q ss_pred ----CCHHHH-----H-HhcCCCEEEEcCCCCCC
Q psy11152 80 ----VTTLET-----L-DAYDCDFCVHGALEVLV 103 (112)
Q Consensus 80 ----~~~~~f-----i-~~l~~~~iv~G~D~~f~ 103 (112)
-.|.|- + ++++|..+++|.|+.-.
T Consensus 232 ~mryAGPrEallhAiirkN~GcThfIvGrDHAG~ 265 (353)
T cd00517 232 PMRYAGPREALWHAIIRKNYGATHFIVGRDHAGV 265 (353)
T ss_pred hhcccCcHHHHHHHHHHHhCCCCeEEECCCCCCC
Confidence 133332 2 67999999999998644
No 79
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=96.36 E-value=0.048 Score=43.58 Aligned_cols=90 Identities=17% Similarity=0.180 Sum_probs=58.2
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhc-c-C--CCEEEE-cCCC--
Q psy11152 7 LATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGI-K-W--VDEVVE-GAPY-- 79 (112)
Q Consensus 7 ~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~-~-~--vd~vi~-~~~~-- 79 (112)
++|++.=+-+++|+||..|.+.|.+.++.+++-..--. +.+--.+.+-|.+..+.+ . + -+.+++ .-+.
T Consensus 187 ~~VvafqTrnP~HraHe~l~~~a~e~~d~lll~plvG~-----~k~~di~~~~r~~~~~~~~~~y~p~~~v~l~~lp~~m 261 (391)
T PRK04149 187 KTVVAFQTRNPPHRAHEYLQKCALEIVDGLLLNPLVGE-----TKSGDIPAEVRMEAYEALLKNYYPKDRVLLSVTPAAM 261 (391)
T ss_pred CeEEEeecCCCCchHHHHHHHHHHHhcCeEEEecCcCC-----CCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeccchh
Confidence 56777889999999999999999999985444222111 112246788888877766 1 1 123333 1122
Q ss_pred --CCHHHH-----H-HhcCCCEEEEcCCCC
Q psy11152 80 --VTTLET-----L-DAYDCDFCVHGALEV 101 (112)
Q Consensus 80 --~~~~~f-----i-~~l~~~~iv~G~D~~ 101 (112)
-.|.|- + ++++|..+++|.|+.
T Consensus 262 ryAGPrEa~lhAivrkN~GcTh~IvGrDHA 291 (391)
T PRK04149 262 RYAGPREAIFHAIVRKNYGCTHFIVGRDHA 291 (391)
T ss_pred cccCcHHHHHHHHHHHhCCCCeEEECCCCC
Confidence 123332 1 689999999999974
No 80
>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2.7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....
Probab=95.83 E-value=0.058 Score=39.80 Aligned_cols=92 Identities=18% Similarity=0.192 Sum_probs=53.4
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcC-CeEEEEEecCcccccCCCCCCcCHHHHHHHHhhc-c---CCCEEEE-cCCC-
Q psy11152 7 LATSLQSNYDMVHFGHANNLRQAKELG-NYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGI-K---WVDEVVE-GAPY- 79 (112)
Q Consensus 7 ~~v~~~G~FD~~H~GH~~ll~~a~~~~-~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~-~---~vd~vi~-~~~~- 79 (112)
+.|++.=+=+++|++|..+++.|.+.+ +.|++-..-.+ .| +--.+.+-|.+..+.+ . --+.+++ .-+.
T Consensus 21 ~~VvafqtrnPlHraHe~l~~~a~e~~~~~lll~plvG~----~k-~~d~~~~~r~~~~~~~~~~y~p~~~v~l~~lp~~ 95 (215)
T PF01747_consen 21 RRVVAFQTRNPLHRAHEYLMRRALEKAGDGLLLHPLVGP----TK-PGDIPYEVRVRCYEALIDNYFPKNRVLLSPLPLP 95 (215)
T ss_dssp SSEEEEEESS---HHHHHHHHHHHHHHTSEEEEEEBESB-----S-TTSCCHHHHHHHHHHHHHHCSSTTGEEEEBBESB
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcCcEEEEeccCC----CC-cCCCCHHHHHHHHHHHHHHhCCCCcEEEeccCch
Confidence 456777789999999999999999986 65555332221 11 1246778888866654 1 1244444 1121
Q ss_pred ---CCHHHHH------HhcCCCEEEEcCCCCCC
Q psy11152 80 ---VTTLETL------DAYDCDFCVHGALEVLV 103 (112)
Q Consensus 80 ---~~~~~fi------~~l~~~~iv~G~D~~f~ 103 (112)
-.|.|-+ ++++|..+++|.|+.-.
T Consensus 96 mr~aGPrEallhAiirkN~GcTh~IvGrdhAg~ 128 (215)
T PF01747_consen 96 MRYAGPREALLHAIIRKNYGCTHFIVGRDHAGV 128 (215)
T ss_dssp ---SHHHHHHHHHHHHHHTT-SEEEE-TTTT-S
T ss_pred hcccCcHHHHHHHHHHHHCCCceEEeCCcCCCc
Confidence 2344422 68999999999998753
No 81
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=93.91 E-value=0.67 Score=38.73 Aligned_cols=95 Identities=13% Similarity=0.069 Sum_probs=59.7
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhcc---CCCEEEE-cCCC---
Q psy11152 7 LATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIK---WVDEVVE-GAPY--- 79 (112)
Q Consensus 7 ~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~~---~vd~vi~-~~~~--- 79 (112)
++|++.=+-+|+|+||..+++.|.+.++.. +.+++ ..-..| +--.+.+-|.+..+.+. --+.+++ .-|.
T Consensus 187 ~~v~afqtrnP~Hr~He~l~~~a~~~~d~~-lll~p--~~G~~k-~~d~~~~~r~~~~~~~~~~~p~~~~~l~~~p~~mr 262 (568)
T PRK05537 187 RRVVAFQTRNPLHRAHEELTKRAAREVGAN-LLIHP--VVGMTK-PGDIDHFTRVRCYEALLDKYPPATTLLSLLPLAMR 262 (568)
T ss_pred CcEEEEecCCCCcHHHHHHHHHHHHhcCCe-EEEec--CCCCCC-CCCCCHHHHHHHHHHHHHhCCCCcEEEEeccchhc
Confidence 567778899999999999999999988732 22232 111111 12467888888766551 1233333 1121
Q ss_pred -CCHHHH------HHhcCCCEEEEcCCCCCCcc
Q psy11152 80 -VTTLET------LDAYDCDFCVHGALEVLVSL 105 (112)
Q Consensus 80 -~~~~~f------i~~l~~~~iv~G~D~~f~~~ 105 (112)
-.|.|- -++++|..+++|.|+.-...
T Consensus 263 yaGpreai~hAi~r~N~Gcth~ivGrdhAg~~~ 295 (568)
T PRK05537 263 MAGPREALWHAIIRRNYGCTHFIVGRDHAGPGK 295 (568)
T ss_pred ccCcHHHHHHHHHHHhCCCCeEEECCCCCCCCC
Confidence 123332 16899999999999876643
No 82
>KOG3199|consensus
Probab=93.63 E-value=0.5 Score=35.06 Aligned_cols=70 Identities=14% Similarity=0.088 Sum_probs=46.4
Q ss_pred EEecccCcCCHHHHHHHHHHHHcC----Ce-EEEEEecCcccccCCCCCCcCHHHHHHHHhhccCCCEEEEcCCCC
Q psy11152 10 SLQSNYDMVHFGHANNLRQAKELG----NY-LVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVVEGAPYV 80 (112)
Q Consensus 10 ~~~G~FD~~H~GH~~ll~~a~~~~----~~-lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~~~vd~vi~~~~~~ 80 (112)
++-|.|.|...+|+.+++-|+..- .. ++=|+.+ |.-..+|...+.+...|+++.+..-....-+.-|.|.
T Consensus 12 ~A~gSFNpiT~~HLrmfElAkd~l~~t~~~~Vv~GimS-PV~DaYkKKgLipa~hrv~~~ElAt~~Skwl~vD~we 86 (234)
T KOG3199|consen 12 LACGSFNPITNLHLRMFELAKDYLNETGRYRVVKGIMS-PVGDAYKKKGLIPAYHRVRMVELATETSKWLMVDGWE 86 (234)
T ss_pred EEecccCchhHHHHHHHHHHHHHHhccCCeEEEeeEec-ccchhhhccccchhhhHHHHHHhhhccccceecchhh
Confidence 778999999999999999998652 23 4445544 2221233336889999999998542344444445553
No 83
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=79.53 E-value=0.54 Score=38.17 Aligned_cols=30 Identities=17% Similarity=-0.036 Sum_probs=26.0
Q ss_pred CCceEEEEecccCcCCHHHHHHHHHHHHcC
Q psy11152 4 LNLLATSLQSNYDMVHFGHANNLRQAKELG 33 (112)
Q Consensus 4 ~~~~~v~~~G~FD~~H~GH~~ll~~a~~~~ 33 (112)
.+++.+++-|.||.+|.||+.+|.++...+
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (470)
T PLN02341 412 LNEDDTFWAELLKNSDCSEISFLSKMAING 441 (470)
T ss_pred CCcchhHHHHhhcccccchhhhhhhhhhcc
Confidence 356778999999999999999999987765
No 84
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=69.90 E-value=33 Score=23.59 Aligned_cols=73 Identities=11% Similarity=-0.002 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhccCCCEEEEcCCC----CCHHH-------HH
Q psy11152 18 VHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVVEGAPY----VTTLE-------TL 86 (112)
Q Consensus 18 ~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~~~vd~vi~~~~~----~~~~~-------fi 86 (112)
++.--.+++..|.+++..+.+.+...+ ..++ .+.+..+ |+|.++..+.. ..++. .+
T Consensus 13 l~~~s~el~~~A~~l~~~v~~v~~G~~-----------~~~~-~~~~~~~-Gad~v~~~~~~~~~~~~~~~~a~al~~~i 79 (168)
T cd01715 13 LRELTLEAVTAARKLGGEVTALVIGSG-----------AEAV-AAALKAY-GADKVLVAEDPALAHYLAEPYAPALVALA 79 (168)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEEECCC-----------hHHH-HHHHHhc-CCCEEEEecChhhcccChHHHHHHHHHHH
Confidence 444556788888888655444332211 0111 3334466 89999874321 12332 34
Q ss_pred HhcCCCEEEEcCCCCCC
Q psy11152 87 DAYDCDFCVHGALEVLV 103 (112)
Q Consensus 87 ~~l~~~~iv~G~D~~f~ 103 (112)
++.+++.|++|....-.
T Consensus 80 ~~~~p~~Vl~~~t~~g~ 96 (168)
T cd01715 80 KKEKPSHILAGATSFGK 96 (168)
T ss_pred HhcCCCEEEECCCcccc
Confidence 67899999999986533
No 85
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=59.16 E-value=57 Score=22.56 Aligned_cols=80 Identities=15% Similarity=0.071 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHHHcC---CeEEEEEecCcccccCCCCCCcCHHHH-HHHHhhccCCCEEEEcC-CC---CCHHH-----
Q psy11152 18 VHFGHANNLRQAKELG---NYLVVGVHTDEEISKHKGPPVFTQQER-YKMVRGIKWVDEVVEGA-PY---VTTLE----- 84 (112)
Q Consensus 18 ~H~GH~~ll~~a~~~~---~~lvv~v~~d~~~~~~k~~~i~s~~eR-~~~l~~~~~vd~vi~~~-~~---~~~~~----- 84 (112)
+..--.+++..|++++ ..+.+.+...+ .++- .+.+..+ |+|.++..+ +. ..++.
T Consensus 17 l~~~~~e~l~~A~~l~~~~~~v~~v~~G~~------------~~~~~~~~~~~~-Gad~v~~~~~~~~~~~~~~~~a~~l 83 (181)
T cd01985 17 LNPLDLEAVEAALRLKEYGGEVTALVIGPP------------AAEVALREALAM-GADKVLLVEDPALAGYDPEATAKAL 83 (181)
T ss_pred cCHhhHHHHHHHHHHhhcCCeEEEEEECCh------------HHHHHHHHHHHh-CCCEEEEEecCcccCCChHHHHHHH
Confidence 4555678888899886 44433332111 1111 1333456 899988732 21 12332
Q ss_pred --HHHhcCCCEEEEcCCCCCCccccccc
Q psy11152 85 --TLDAYDCDFCVHGALEVLVSLESSVS 110 (112)
Q Consensus 85 --fi~~l~~~~iv~G~D~~f~~~~~~~~ 110 (112)
.+++.+++.|++|.....+..+.-|+
T Consensus 84 ~~~i~~~~p~~Vl~g~t~~g~~la~rlA 111 (181)
T cd01985 84 AALIKKEKPDLILAGATSIGKQLAPRVA 111 (181)
T ss_pred HHHHHHhCCCEEEECCcccccCHHHHHH
Confidence 34678999999999988666555443
No 86
>PRK00032 Maf-like protein; Reviewed
Probab=50.05 E-value=46 Score=23.94 Aligned_cols=42 Identities=17% Similarity=0.008 Sum_probs=26.3
Q ss_pred HHHHHHHhhccCCCEEEE---cCCC----CCHHHHH------------HhcCCCEEEEcCCC
Q psy11152 58 QERYKMVRGIKWVDEVVE---GAPY----VTTLETL------------DAYDCDFCVHGALE 100 (112)
Q Consensus 58 ~eR~~~l~~~~~vd~vi~---~~~~----~~~~~fi------------~~l~~~~iv~G~D~ 100 (112)
.-|.++|+++ |++..+. +|+. .+|.+++ +++.++.+|+|.|-
T Consensus 11 prR~elL~~~-g~~f~v~~~~idE~~~~~~~p~~~v~~lA~~KA~~v~~~~~~~~~vI~aDT 71 (190)
T PRK00032 11 PRRRELLTQL-GVPFEVLVPGIEEQRQPGESAQQYVERLARDKAQAGVALAPQDLPVLGADT 71 (190)
T ss_pred HHHHHHHHHC-CCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCe
Confidence 5678888988 6876554 3332 3466663 22346677888774
No 87
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=49.86 E-value=1e+02 Score=22.75 Aligned_cols=78 Identities=13% Similarity=0.089 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHcCCeEEEEEecCcc-cccCCCC--CCcCHHHHHHHHhhccCCCEEEE-cCCC-CCHHH--------H
Q psy11152 19 HFGHANNLRQAKELGNYLVVGVHTDEE-ISKHKGP--PVFTQQERYKMVRGIKWVDEVVE-GAPY-VTTLE--------T 85 (112)
Q Consensus 19 H~GH~~ll~~a~~~~~~lvv~v~~d~~-~~~~k~~--~i~s~~eR~~~l~~~~~vd~vi~-~~~~-~~~~~--------f 85 (112)
+.|+ .++++|++++.++.- +..++. ++..++. .--...+...+-+.+.|.|.||. +..+ -...+ +
T Consensus 11 ~~Gs-~i~~EA~~RGHeVTA-ivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~~~~~~~~~~k~~~~l 88 (211)
T COG2910 11 KAGS-RILKEALKRGHEVTA-IVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAGASDNDELHSKSIEAL 88 (211)
T ss_pred hhHH-HHHHHHHhCCCeeEE-EEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccCCCCChhHHHHHHHHHH
Confidence 4665 789999999887544 444432 2211221 11122233344556778999997 4322 11122 3
Q ss_pred H---Hh-cCCCEEEEcC
Q psy11152 86 L---DA-YDCDFCVHGA 98 (112)
Q Consensus 86 i---~~-l~~~~iv~G~ 98 (112)
+ +. -.++.+|+|-
T Consensus 89 i~~l~~agv~RllVVGG 105 (211)
T COG2910 89 IEALKGAGVPRLLVVGG 105 (211)
T ss_pred HHHHhhcCCeeEEEEcC
Confidence 3 33 4678999984
No 88
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=48.82 E-value=64 Score=24.88 Aligned_cols=59 Identities=20% Similarity=0.241 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHcCC-eEEEEEecCc-ccccCCCCCCcCHHHHHHHHhhc--cCCCEEEEcCC
Q psy11152 20 FGHANNLRQAKELGN-YLVVGVHTDE-EISKHKGPPVFTQQERYKMVRGI--KWVDEVVEGAP 78 (112)
Q Consensus 20 ~GH~~ll~~a~~~~~-~lvv~v~~d~-~~~~~k~~~i~s~~eR~~~l~~~--~~vd~vi~~~~ 78 (112)
..|+.+|.++...+. .+-++++++. .+.+.--|.--|.++|++.++.+ .|+...+.++|
T Consensus 129 ~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~eaGi~~~v~v~P 191 (297)
T COG1533 129 LRDLDLLLELAERGKVRVAVSITTLDEELAKILEPRAPSPEERLEALKELSEAGIPVGLFVAP 191 (297)
T ss_pred hhhHHHHHhhhhccceEEEEEeecCcHHHHHhcCCCCcCHHHHHHHHHHHHHCCCeEEEEEec
Confidence 356777777766643 3555666643 22111112234679999998876 47887766444
No 89
>PRK04694 Maf-like protein; Reviewed
Probab=47.02 E-value=49 Score=23.80 Aligned_cols=43 Identities=14% Similarity=0.003 Sum_probs=26.5
Q ss_pred HHHHHHHhhccCCCEEEE---cCCC----CCHHHHH------------Hhc---CCCEEEEcCCCC
Q psy11152 58 QERYKMVRGIKWVDEVVE---GAPY----VTTLETL------------DAY---DCDFCVHGALEV 101 (112)
Q Consensus 58 ~eR~~~l~~~~~vd~vi~---~~~~----~~~~~fi------------~~l---~~~~iv~G~D~~ 101 (112)
.-|.++|+++ |++..++ +|+. .+|.+++ +++ +++.+|+|.|--
T Consensus 9 prR~elL~~~-g~~f~~~~~~idE~~~~~~~p~~~v~~lA~~KA~~v~~~~~~~~~~~lvI~aDTv 73 (190)
T PRK04694 9 PRRRELLQRL-DVPFQTLQLDVPEVRAADESPDHYVQRVALEKAHAGLALVQAADADAIVLGSDTE 73 (190)
T ss_pred HHHHHHHHHC-CCCcEEecCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCCEEEEeCeE
Confidence 4578889988 6776543 3331 3566663 122 467788888753
No 90
>PRK14364 Maf-like protein; Provisional
Probab=46.29 E-value=56 Score=23.30 Aligned_cols=42 Identities=7% Similarity=-0.062 Sum_probs=26.1
Q ss_pred HHHHHHHhhccCCCEEEE---cCCC----CCHHHHHH-----------hcCCCEEEEcCCC
Q psy11152 58 QERYKMVRGIKWVDEVVE---GAPY----VTTLETLD-----------AYDCDFCVHGALE 100 (112)
Q Consensus 58 ~eR~~~l~~~~~vd~vi~---~~~~----~~~~~fi~-----------~l~~~~iv~G~D~ 100 (112)
.-|.++|+++ |++..++ +|+. .+|.+++. +..++.+|+|.|-
T Consensus 6 prR~elL~~~-g~~f~v~~~~~dE~~~~~~~p~~~~~~lA~~KA~~v~~~~~~~~vI~aDT 65 (181)
T PRK14364 6 PRRRELLQQL-GLNFEIYSPDIDESVHEGELVHQYVERLAREKAQAVLNIFPDSVIIAADT 65 (181)
T ss_pred HHHHHHHHHC-CCCeEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCEEEEeCe
Confidence 4578889988 6776554 3332 35666631 2235778888775
No 91
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=45.48 E-value=1.5e+02 Score=23.20 Aligned_cols=30 Identities=20% Similarity=0.046 Sum_probs=19.3
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEE
Q psy11152 7 LATSLQSNYDMVHFGHANNLRQAKELGNYLVVGV 40 (112)
Q Consensus 7 ~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v 40 (112)
.+++|.| +...=+++|+.|.+.+++..|-+
T Consensus 121 ~~IlTh~----~S~~v~~~l~~A~~~~k~~~V~V 150 (301)
T COG1184 121 DVILTHS----FSKTVLEVLKTAADRGKRFKVIV 150 (301)
T ss_pred CEEEEec----CcHHHHHHHHHhhhcCCceEEEE
Confidence 4556665 45566788888888877544433
No 92
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=45.37 E-value=80 Score=23.09 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=24.9
Q ss_pred HHHHHHH---HHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhccCCCEEEE
Q psy11152 21 GHANNLR---QAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVVE 75 (112)
Q Consensus 21 GH~~ll~---~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~~~vd~vi~ 75 (112)
+...+.+ ++++.++.+||.++.-.. +...|.....+-...+-.. |+|.|+=
T Consensus 169 ~~~~i~~~i~~~r~~~D~vIv~~HwG~e---~~~~p~~~q~~~a~~lida-GaDiIiG 222 (250)
T PF09587_consen 169 GIERIKEDIREARKKADVVIVSLHWGIE---YENYPTPEQRELARALIDA-GADIIIG 222 (250)
T ss_pred hHHHHHHHHHHHhcCCCEEEEEeccCCC---CCCCCCHHHHHHHHHHHHc-CCCEEEe
Confidence 3344544 444446777888876432 1111322222223333344 7888885
No 93
>COG0424 Maf Nucleotide-binding protein implicated in inhibition of septum formation [Cell division and chromosome partitioning]
Probab=45.20 E-value=60 Score=23.66 Aligned_cols=42 Identities=17% Similarity=-0.016 Sum_probs=27.3
Q ss_pred HHHHHHHhhccCCCEEEE---cCCC----CCHHHHH------------HhcCCCEEEEcCCC
Q psy11152 58 QERYKMVRGIKWVDEVVE---GAPY----VTTLETL------------DAYDCDFCVHGALE 100 (112)
Q Consensus 58 ~eR~~~l~~~~~vd~vi~---~~~~----~~~~~fi------------~~l~~~~iv~G~D~ 100 (112)
.-|.++|+++ +++..+. +|+. ..|.+++ .++..+.+|+|.|-
T Consensus 12 PrR~elL~~~-gi~f~~~~~~iDE~~~~~~~P~~~v~~LA~~KA~~va~~~~~~~~VigaDt 72 (193)
T COG0424 12 PRRRELLEQL-GIPFEVIPSDIDEPLLKAEEPREYVLRLAEEKARAVAARLPPDALVIGADT 72 (193)
T ss_pred HHHHHHHHHC-CCCeEEecCCCCCCcccCCCHHHHHHHHHHHHHHHHHHhCCCCCEEEecCe
Confidence 4688999999 6876554 4432 2367764 12334889998884
No 94
>PRK04425 Maf-like protein; Reviewed
Probab=42.63 E-value=68 Score=23.22 Aligned_cols=43 Identities=12% Similarity=-0.112 Sum_probs=26.7
Q ss_pred HHHHHHHhhccCCCEEEE---cCCC----CCHHHHHH-----------hcCCCEEEEcCCCC
Q psy11152 58 QERYKMVRGIKWVDEVVE---GAPY----VTTLETLD-----------AYDCDFCVHGALEV 101 (112)
Q Consensus 58 ~eR~~~l~~~~~vd~vi~---~~~~----~~~~~fi~-----------~l~~~~iv~G~D~~ 101 (112)
.-|.++|+++ |++..++ +|+. .+|.++.. +..++.+|+|.|--
T Consensus 14 prR~elL~~~-g~~f~v~~~~iDE~~~~~~~p~~~~~~lA~~KA~~v~~~~~~~lvI~aDTv 74 (196)
T PRK04425 14 VFRREQMERL-GIAFQAASPDFDETPMLGESAPQTALRLAEGKARSLTGRFPEALIVGADQV 74 (196)
T ss_pred HHHHHHHHHC-CCCeEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCCCCEEEEeCeE
Confidence 5688899998 6776554 3332 35666631 22467788887753
No 95
>PRK04056 Maf-like protein; Reviewed
Probab=41.84 E-value=76 Score=22.60 Aligned_cols=42 Identities=10% Similarity=0.005 Sum_probs=24.4
Q ss_pred HHHHHHHhhccCCCEEEE---cCCC----CCHHHHH------------HhcCCCEEEEcCCC
Q psy11152 58 QERYKMVRGIKWVDEVVE---GAPY----VTTLETL------------DAYDCDFCVHGALE 100 (112)
Q Consensus 58 ~eR~~~l~~~~~vd~vi~---~~~~----~~~~~fi------------~~l~~~~iv~G~D~ 100 (112)
.-|.++|+++ |++..+. +|+. .+|.+++ +++..+.+|+|.|-
T Consensus 9 prR~elL~~~-g~~f~v~~~~idE~~~~~~~p~~~v~~lA~~Ka~~v~~~~~~~~~vI~aDT 69 (180)
T PRK04056 9 STRANLLKEA-GIEFEQKSLDFDEESIKKTSPKEFVYLAVKGKLEQFLKKYGNECNLLVADS 69 (180)
T ss_pred HHHHHHHHHC-CCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCE
Confidence 4577888888 6776554 3332 3466653 22333357777764
No 96
>PRK00648 Maf-like protein; Reviewed
Probab=41.56 E-value=74 Score=22.85 Aligned_cols=42 Identities=14% Similarity=-0.035 Sum_probs=26.5
Q ss_pred HHHHHHHhhccCCCEEEE---cCCC-----CCHHHHH------------HhcCCCEEEEcCCC
Q psy11152 58 QERYKMVRGIKWVDEVVE---GAPY-----VTTLETL------------DAYDCDFCVHGALE 100 (112)
Q Consensus 58 ~eR~~~l~~~~~vd~vi~---~~~~-----~~~~~fi------------~~l~~~~iv~G~D~ 100 (112)
.-|.++|+++ |++..+. +.++ .+|.+++ +++.++.+|+|.|-
T Consensus 12 prR~elL~~~-g~~f~v~~~~~~dE~~~~~~~p~~~v~~lA~~Ka~~v~~~~~~~~~VI~aDT 73 (191)
T PRK00648 12 PRRKEILEGF-RIPFEVVPSPFVEESYPYSLDPEEITLELARLKAEAVRSDLFPDELIITADT 73 (191)
T ss_pred HHHHHHHHHC-CCCeEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCEEEEeCe
Confidence 5678889988 6776544 2122 3566663 12457788888875
No 97
>TIGR00172 maf MAF protein. This nonessential gene causes inhibition of septation when overexpressed. A member of the family is found in the Archaeon Pyrococcus horikoshii and another in the round worm Caenorhabditis elegans.
Probab=40.52 E-value=77 Score=22.62 Aligned_cols=43 Identities=12% Similarity=-0.024 Sum_probs=25.8
Q ss_pred HHHHHHHHhhccCCCEEEE---cCCC----CCHHHHHH-----------hcCCCEEEEcCCC
Q psy11152 57 QQERYKMVRGIKWVDEVVE---GAPY----VTTLETLD-----------AYDCDFCVHGALE 100 (112)
Q Consensus 57 ~~eR~~~l~~~~~vd~vi~---~~~~----~~~~~fi~-----------~l~~~~iv~G~D~ 100 (112)
..-|.++|+++ |++..++ +|+. .+|.+++. +..++.+|+|.|-
T Consensus 11 SprR~elL~~~-g~~f~v~~~~idE~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~vI~aDT 71 (183)
T TIGR00172 11 SPRRKELLEEL-GISFEQIVSEFDEKSLKTTSPRELVYRLAKEKAQAVAELLADALIIGADT 71 (183)
T ss_pred CHHHHHHHHHC-CCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCEEEEeCe
Confidence 35678889998 6876554 3332 35666641 1235567777764
No 98
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=39.66 E-value=1.3e+02 Score=23.55 Aligned_cols=49 Identities=14% Similarity=-0.156 Sum_probs=32.0
Q ss_pred HHHHHHHhhccCCCEEEE---cCC-----CCCHHHH-------HHhcCCCEEEEcCCCCCCccc
Q psy11152 58 QERYKMVRGIKWVDEVVE---GAP-----YVTTLET-------LDAYDCDFCVHGALEVLVSLE 106 (112)
Q Consensus 58 ~eR~~~l~~~~~vd~vi~---~~~-----~~~~~~f-------i~~l~~~~iv~G~D~~f~~~~ 106 (112)
++.++.+..-+||=-+.. |.. .-+..++ ++..+.|.|..|.||..+..|
T Consensus 205 D~qlkaI~~~gGvIgv~~~~~fl~~~~~~~atldd~v~hI~h~v~~~G~dhVglGsDf~g~~~~ 268 (313)
T COG2355 205 DEQLKAIAETGGVIGVNFIPAFLRPGGAARATLDDLVRHIDHFVELVGIDHVGLGSDFDGGTGP 268 (313)
T ss_pred HHHHHHHHhcCCEEEEEeehhhccCCCCCCCCHHHHHHHHHHHHHhcCcceeEecccccCCCCC
Confidence 556667777767544333 322 1233333 356899999999999999885
No 99
>PRK00884 Maf-like protein; Reviewed
Probab=39.23 E-value=73 Score=22.99 Aligned_cols=42 Identities=7% Similarity=-0.066 Sum_probs=25.7
Q ss_pred HHHHHHHhhccCCCEEEE---cCCC----CCHHHHHH-----------hcCCCEEEEcCCC
Q psy11152 58 QERYKMVRGIKWVDEVVE---GAPY----VTTLETLD-----------AYDCDFCVHGALE 100 (112)
Q Consensus 58 ~eR~~~l~~~~~vd~vi~---~~~~----~~~~~fi~-----------~l~~~~iv~G~D~ 100 (112)
.-|.++|+++ |++..+. +|+. .+|.+++. +..++.+|+|.|-
T Consensus 11 prR~elL~~~-g~~f~v~~~~idE~~~~~~~p~~~v~~lA~~KA~~v~~~~~~~~VI~aDT 70 (194)
T PRK00884 11 PYRRALLEKL-QLPFECAAPEVDETPRPGESPRQLVLRLAQEKAQSLASRYPDHLIIGSDQ 70 (194)
T ss_pred HHHHHHHHHC-CCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCCCCEEEEeCe
Confidence 5678889998 6776544 3332 35666641 2235677888774
No 100
>PRK14367 Maf-like protein; Provisional
Probab=39.17 E-value=83 Score=22.85 Aligned_cols=28 Identities=11% Similarity=-0.045 Sum_probs=17.8
Q ss_pred HHHHHHHhhccCCCEEEE---cCCC----CCHHHHH
Q psy11152 58 QERYKMVRGIKWVDEVVE---GAPY----VTTLETL 86 (112)
Q Consensus 58 ~eR~~~l~~~~~vd~vi~---~~~~----~~~~~fi 86 (112)
.-|.++|+++ |++..+. +|+. .+|.+++
T Consensus 11 prR~eLL~~~-Gi~f~v~~~~iDE~~~~~~~p~~~v 45 (202)
T PRK14367 11 PRRMEILTQL-GYRVVKLPAGIDETVKAGETPARYV 45 (202)
T ss_pred HHHHHHHHHC-CCCeEEECCCCCCCCCCCCCHHHHH
Confidence 5678888888 7877654 3332 3466663
No 101
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=39.03 E-value=40 Score=24.77 Aligned_cols=27 Identities=44% Similarity=0.763 Sum_probs=14.7
Q ss_pred CcCCHHHHH-HHHHHHHc-CCeEEEEEec
Q psy11152 16 DMVHFGHAN-NLRQAKEL-GNYLVVGVHT 42 (112)
Q Consensus 16 D~~H~GH~~-ll~~a~~~-~~~lvv~v~~ 42 (112)
||+|+|--. -+..+.+. +..+++|++.
T Consensus 83 dGVHlGq~D~~~~~ar~~~~~~~iIG~S~ 111 (211)
T COG0352 83 DGVHLGQDDMPLAEARELLGPGLIIGLST 111 (211)
T ss_pred CEEEcCCcccchHHHHHhcCCCCEEEeec
Confidence 677777542 33445444 3455666654
No 102
>PRK14363 Maf-like protein; Provisional
Probab=38.76 E-value=85 Score=22.89 Aligned_cols=42 Identities=17% Similarity=0.114 Sum_probs=26.5
Q ss_pred HHHHHHHhhccCCCEEEE---cCCC--CCHHHHH------------Hhc-CCCEEEEcCCC
Q psy11152 58 QERYKMVRGIKWVDEVVE---GAPY--VTTLETL------------DAY-DCDFCVHGALE 100 (112)
Q Consensus 58 ~eR~~~l~~~~~vd~vi~---~~~~--~~~~~fi------------~~l-~~~~iv~G~D~ 100 (112)
.-|.++|+++ |++..+. +|+. .+|.+++ +++ .++.+|+|.|-
T Consensus 10 prR~elL~~~-G~~f~v~~~~iDE~~~~~P~~~v~~lA~~KA~~v~~~~~~~~~lvI~aDT 69 (204)
T PRK14363 10 PRRRQLMELL-GIEFEVEKPDVEEEFLESPEETVRELSLRKAEWVFKKRKEEEILVIGSDT 69 (204)
T ss_pred HHHHHHHHhC-CCCeEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCCEEEEeCe
Confidence 4678889998 7876654 3332 3566663 122 36778888774
No 103
>cd08059 MPN_prok_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); prokaryotic. This family contains bacterial and archaeal MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These catalytically active domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.
Probab=38.74 E-value=97 Score=19.24 Aligned_cols=44 Identities=16% Similarity=0.006 Sum_probs=23.5
Q ss_pred HHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhccCCCEEEEc
Q psy11152 26 LRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVVEG 76 (112)
Q Consensus 26 l~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~~~vd~vi~~ 76 (112)
++.|.+.+..+++.+++.|.- .+.-|.+++. ..+.+ ++|.+|+.
T Consensus 48 ~~~a~~~~~~~v~i~HsHP~g-----~~~PS~~D~~-~~~~~-~~~~iIv~ 91 (101)
T cd08059 48 DLAALEIGMKVVGLVHSHPSG-----SCRPSEADLS-LFTRF-GLYHVIVC 91 (101)
T ss_pred HHHHhhCCCcEEEEEecCcCC-----CCCCCHHHHH-HHHhc-CCeEEEEE
Confidence 566666665666666766632 2222445543 33334 56776664
No 104
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=38.70 E-value=26 Score=26.80 Aligned_cols=55 Identities=16% Similarity=0.248 Sum_probs=36.4
Q ss_pred ccCcCC------------HHHHHHHHHH----HHc-CCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhcc
Q psy11152 14 NYDMVH------------FGHANNLRQA----KEL-GNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIK 68 (112)
Q Consensus 14 ~FD~~H------------~GH~~ll~~a----~~~-~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~~ 68 (112)
.||+-| -|..+++.-. ... +|-+.+=+++||......++.-.++++=.+++++++
T Consensus 187 i~DpSHsvq~pg~~~~~s~G~r~~v~~la~AAvA~GadGl~iEvHpdP~~AlsDg~q~l~~~~~~~ll~~l~ 258 (264)
T PRK05198 187 IFDATHSVQLPGGQGGSSGGQREFVPVLARAAVAVGVAGLFIETHPDPDNALSDGPNMLPLDKLEPLLEQLK 258 (264)
T ss_pred EEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHcCCCEEEEEeCCCccccCCCccccCCHHHHHHHHHHHH
Confidence 579999 5888877543 333 377999999998654344454556666556666654
No 105
>PRK00234 Maf-like protein; Reviewed
Probab=38.48 E-value=81 Score=22.67 Aligned_cols=42 Identities=7% Similarity=-0.033 Sum_probs=25.8
Q ss_pred HHHHHHHhhccCCCEEEE---cCCC----CCHHHHHH-----------hcCCCEEEEcCCC
Q psy11152 58 QERYKMVRGIKWVDEVVE---GAPY----VTTLETLD-----------AYDCDFCVHGALE 100 (112)
Q Consensus 58 ~eR~~~l~~~~~vd~vi~---~~~~----~~~~~fi~-----------~l~~~~iv~G~D~ 100 (112)
.-|.++|+++ |++..++ +|+. .+|.+++. +..++.+|+|.|-
T Consensus 11 prR~elL~~~-gi~f~v~~~~iDE~~~~~~~p~~~v~~lA~~Ka~~v~~~~~~~~vI~aDT 70 (192)
T PRK00234 11 PYRRELLARL-RLPFTWASPDIDESHRPDESAEELVRRLARQKAEALAGSHPQHLIIGSDQ 70 (192)
T ss_pred HHHHHHHHHC-CCCcEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCCCCEEEEeCe
Confidence 5688899998 6876554 4432 35777641 1234667777764
No 106
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=38.12 E-value=50 Score=22.43 Aligned_cols=73 Identities=16% Similarity=0.097 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCC----eEEEEEecCcccccCCCCCCcCHHHHH-HHHhhccCCCEEEEc-CCC---CCHHHH-------
Q psy11152 22 HANNLRQAKELGN----YLVVGVHTDEEISKHKGPPVFTQQERY-KMVRGIKWVDEVVEG-APY---VTTLET------- 85 (112)
Q Consensus 22 H~~ll~~a~~~~~----~lvv~v~~d~~~~~~k~~~i~s~~eR~-~~l~~~~~vd~vi~~-~~~---~~~~~f------- 85 (112)
-.++|..|+++++ ++.+.+..+. -...+-+ +.+..+ |+|.++.. ++. ..++.+
T Consensus 17 ~~e~l~~A~~La~~~g~~v~av~~G~~----------~~~~~~l~~~l~~~-G~d~v~~~~~~~~~~~~~~~~a~~l~~~ 85 (164)
T PF01012_consen 17 SLEALEAARRLAEALGGEVTAVVLGPA----------EEAAEALRKALAKY-GADKVYHIDDPALAEYDPEAYADALAEL 85 (164)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEEEEETC----------CCHHHHHHHHHHST-TESEEEEEE-GGGTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCeEEEEEEecc----------hhhHHHHhhhhhhc-CCcEEEEecCccccccCHHHHHHHHHHH
Confidence 3578888888764 4433222210 0123332 344456 89998873 221 134433
Q ss_pred HHhcCCCEEEEcCCCCCCcc
Q psy11152 86 LDAYDCDFCVHGALEVLVSL 105 (112)
Q Consensus 86 i~~l~~~~iv~G~D~~f~~~ 105 (112)
+++.+++.|++|........
T Consensus 86 ~~~~~~~lVl~~~t~~g~~l 105 (164)
T PF01012_consen 86 IKEEGPDLVLFGSTSFGRDL 105 (164)
T ss_dssp HHHHT-SEEEEESSHHHHHH
T ss_pred HHhcCCCEEEEcCcCCCCcH
Confidence 47789999999987654433
No 107
>PRK02141 Maf-like protein; Reviewed
Probab=37.99 E-value=83 Score=22.97 Aligned_cols=43 Identities=14% Similarity=-0.025 Sum_probs=27.0
Q ss_pred HHHHHHHHhhccCCCEEEE---cCCC----CCHHHHH------------Hhc--CCCEEEEcCCC
Q psy11152 57 QQERYKMVRGIKWVDEVVE---GAPY----VTTLETL------------DAY--DCDFCVHGALE 100 (112)
Q Consensus 57 ~~eR~~~l~~~~~vd~vi~---~~~~----~~~~~fi------------~~l--~~~~iv~G~D~ 100 (112)
..-|.++|+++ |++..+. +|+. .+|.++. +++ .++.+|+|.|-
T Consensus 17 SprR~elL~~~-G~~f~v~~~~iDE~~~~~~~p~~~~~~lA~~KA~~v~~~l~~~~~~iVI~aDT 80 (207)
T PRK02141 17 SRYRRELLERL-RLPFDVVSPDIDETPLAGETPAATALRLAAAKARAVAATIDAPPGALVIGSDQ 80 (207)
T ss_pred CHHHHHHHHHC-CCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhccCCCCEEEEeCe
Confidence 35678899998 7876554 3332 3466653 222 36778888875
No 108
>PRK14368 Maf-like protein; Provisional
Probab=37.70 E-value=91 Score=22.49 Aligned_cols=42 Identities=12% Similarity=-0.037 Sum_probs=26.1
Q ss_pred HHHHHHHhhccCCCEEEE---cCCC----CCHHHHHH-----------hcCCCEEEEcCCC
Q psy11152 58 QERYKMVRGIKWVDEVVE---GAPY----VTTLETLD-----------AYDCDFCVHGALE 100 (112)
Q Consensus 58 ~eR~~~l~~~~~vd~vi~---~~~~----~~~~~fi~-----------~l~~~~iv~G~D~ 100 (112)
.-|.++|+++ |++..+. +|+. .+|.+++. +..++.+|+|.|-
T Consensus 14 prR~eLL~~~-g~~f~v~~~~iDE~~~~~~~p~~~v~~lA~~KA~~v~~~~~~~~vI~aDT 73 (193)
T PRK14368 14 PRRSELLASA-GIEFDVVPADIPEEPLPGEEPVDHVLRLAREKARAAAALAEGRFFIGADT 73 (193)
T ss_pred HHHHHHHHHC-CCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 5678888988 6776554 3332 35666641 2245677888774
No 109
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=36.04 E-value=13 Score=23.26 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=18.5
Q ss_pred EecccCcCCHHHHHHHHHHHHcC
Q psy11152 11 LQSNYDMVHFGHANNLRQAKELG 33 (112)
Q Consensus 11 ~~G~FD~~H~GH~~ll~~a~~~~ 33 (112)
-.|.||+++.|.+++-++-.+..
T Consensus 23 ~~GfFd~~~ygfrr~~~~~~~~~ 45 (92)
T PF13038_consen 23 QSGFFDGFSYGFRRLFRQIKKKK 45 (92)
T ss_pred hcCchHHHHHHHHHHHHHhcccc
Confidence 36999999999999887766653
No 110
>cd00555 Maf Nucleotide binding protein Maf. Maf has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea, but homologs in B.subtilis and S.cerevisiae are nonessential for cell division. Maf has been predicted to be a nucleotide- or nucleic acid-binding protein with structural similarity to the hypoxanthine/xanthine NTP pyrophosphatase Ham1 from Methanococcus jannaschii, RNase H from Escherichia coli, and some other nucleotide or RNA-binding proteins.
Probab=35.64 E-value=1.1e+02 Score=21.68 Aligned_cols=42 Identities=14% Similarity=0.001 Sum_probs=25.6
Q ss_pred HHHHHHHhhccCCCEEEE---cCCC----CCHHHHH------------HhcCCCEEEEcCCC
Q psy11152 58 QERYKMVRGIKWVDEVVE---GAPY----VTTLETL------------DAYDCDFCVHGALE 100 (112)
Q Consensus 58 ~eR~~~l~~~~~vd~vi~---~~~~----~~~~~fi------------~~l~~~~iv~G~D~ 100 (112)
.-|.++|+++ |++..+. +|+. .+|.+++ +++.-+.+++|.|-
T Consensus 8 prR~elL~~~-g~~f~~~~~~iDE~~~~~~~p~~~v~~lA~~Ka~~v~~~~~~~~liI~aDt 68 (180)
T cd00555 8 PRRRELLEQL-GIPFEVVPSDIDETPIKGESPEDYVLRLAEAKAEAVAARLPPDALVIGADT 68 (180)
T ss_pred HHHHHHHHhC-CCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCEEEEecE
Confidence 5688899998 6776554 4432 3566663 12222567777774
No 111
>PRK01526 Maf-like protein; Reviewed
Probab=34.86 E-value=84 Score=22.90 Aligned_cols=43 Identities=7% Similarity=-0.001 Sum_probs=25.6
Q ss_pred HHHHHHHHhhccCC-CE-EEE--cCCC----CCHHHHH------------HhcCCCEEEEcCCC
Q psy11152 57 QQERYKMVRGIKWV-DE-VVE--GAPY----VTTLETL------------DAYDCDFCVHGALE 100 (112)
Q Consensus 57 ~~eR~~~l~~~~~v-d~-vi~--~~~~----~~~~~fi------------~~l~~~~iv~G~D~ 100 (112)
..-|.++|+++ |+ .. ++. +|+. .+|.+++ +++..+.+|+|.|-
T Consensus 16 SprR~elL~~~-g~~~~~v~~~~iDE~~~~~~~p~~~v~~lA~~KA~~v~~~~~~~~~VI~aDT 78 (205)
T PRK01526 16 SPARIELLNRI-KIIPSQIIPADIDETPNLRELPAPLAIRLAYEKAIKIASQIEESAIIIAADT 78 (205)
T ss_pred CHHHHHHHHhc-CCCCceEecCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCEEEEeCe
Confidence 35678899999 67 44 443 4432 3566664 12334667888774
No 112
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=34.69 E-value=1.9e+02 Score=22.83 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=9.4
Q ss_pred HHHHhhccCCCEEEEcCC
Q psy11152 61 YKMVRGIKWVDEVVEGAP 78 (112)
Q Consensus 61 ~~~l~~~~~vd~vi~~~~ 78 (112)
++.+.++ |+|.||+.|+
T Consensus 85 l~~l~e~-GvDaviv~Dp 101 (347)
T COG0826 85 LDRLVEL-GVDAVIVADP 101 (347)
T ss_pred HHHHHHc-CCCEEEEcCH
Confidence 3344455 5666666554
No 113
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=34.57 E-value=2.1e+02 Score=21.89 Aligned_cols=88 Identities=18% Similarity=0.073 Sum_probs=52.7
Q ss_pred CCCceEEEEecccCcCCHHHHHHHHHHHHcC-CeEEEEEecCccccc--CCCCCCcC--H-HHHH--------HHHhhcc
Q psy11152 3 TLNLLATSLQSNYDMVHFGHANNLRQAKELG-NYLVVGVHTDEEISK--HKGPPVFT--Q-QERY--------KMVRGIK 68 (112)
Q Consensus 3 ~~~~~~v~~~G~FD~~H~GH~~ll~~a~~~~-~~lvv~v~~d~~~~~--~k~~~i~s--~-~eR~--------~~l~~~~ 68 (112)
+++.+.|+++|.-|| ..+|++.+.. .+-++.+--|+.+.. .+-.+..+ . +.|. +.++.+.
T Consensus 74 h~~pk~VLiiGgGdG------~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~ 147 (282)
T COG0421 74 HPNPKRVLIIGGGDG------GTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCE 147 (282)
T ss_pred CCCCCeEEEECCCcc------HHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCC
Confidence 456679999999998 4678888775 345666777774311 01112111 1 3444 4666664
Q ss_pred C-CCEEEE--cCCC-----CCHHHHH----HhcCCCEEEE
Q psy11152 69 W-VDEVVE--GAPY-----VTTLETL----DAYDCDFCVH 96 (112)
Q Consensus 69 ~-vd~vi~--~~~~-----~~~~~fi----~~l~~~~iv~ 96 (112)
. .|.|+. .|+. +...+|. +.|+.++|++
T Consensus 148 ~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v 187 (282)
T COG0421 148 EKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFV 187 (282)
T ss_pred CcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEE
Confidence 3 788887 4442 2246776 3588887765
No 114
>PRK14361 Maf-like protein; Provisional
Probab=34.39 E-value=1e+02 Score=22.08 Aligned_cols=42 Identities=17% Similarity=0.012 Sum_probs=25.3
Q ss_pred HHHHHHHhhccCCCEEEE---cCCC---CCHHHHHH-----------hcCCCEEEEcCCC
Q psy11152 58 QERYKMVRGIKWVDEVVE---GAPY---VTTLETLD-----------AYDCDFCVHGALE 100 (112)
Q Consensus 58 ~eR~~~l~~~~~vd~vi~---~~~~---~~~~~fi~-----------~l~~~~iv~G~D~ 100 (112)
.-|.++|+++ |++..+. +|+. .+|.+++. +..++.+|+|.|-
T Consensus 8 prR~elL~~~-g~~f~v~~~~~dE~~~~~~p~~~v~~lA~~Ka~~v~~~~~~~~vI~aDT 66 (187)
T PRK14361 8 PRRRELLENL-GVPFQVVVSGEAEDSTETDPARLAAELALLKARAVARLHPDAVVIAADT 66 (187)
T ss_pred HHHHHHHHHC-CCCcEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCEEEEeCe
Confidence 4678889998 6776554 3322 35666631 1235667777764
No 115
>PF10932 DUF2783: Protein of unknown function (DUF2783); InterPro: IPR021233 This is a bacterial family of uncharacterised protein.
Probab=33.75 E-value=18 Score=21.49 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=13.6
Q ss_pred CHHHHHHHHHHHHcCC
Q psy11152 19 HFGHANNLRQAKELGN 34 (112)
Q Consensus 19 H~GH~~ll~~a~~~~~ 34 (112)
|+|.+.+|++|.+.+.
T Consensus 43 hIGD~~vL~eAi~~Ar 58 (60)
T PF10932_consen 43 HIGDRAVLREAIAAAR 58 (60)
T ss_pred hcCCHHHHHHHHHHHh
Confidence 8999999999988653
No 116
>cd08071 MPN_DUF2466 Mov34/MPN/PAD-1 family. Mov34 DUF2466 (also known as DNA repair protein RadC) domain of unknown function contains the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. However, to date, the name RadC has been misleading and no function has been determined.
Probab=33.73 E-value=96 Score=20.20 Aligned_cols=38 Identities=8% Similarity=0.015 Sum_probs=30.4
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcc
Q psy11152 8 ATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEE 45 (112)
Q Consensus 8 ~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~ 45 (112)
..+..|+-|....-=..+++.|......-++.+++.|.
T Consensus 34 ~~l~~G~~~~~~v~~R~i~~~aL~~~A~~vil~HNHPs 71 (113)
T cd08071 34 ETISVGTLNSSLVHPREIFKEALRHNAAAIILAHNHPS 71 (113)
T ss_pred EEEeecCCcceecCHHHHHHHHHHHhhheEEEEeeCCC
Confidence 34677887888877789999999987777888888775
No 117
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=32.20 E-value=47 Score=26.43 Aligned_cols=20 Identities=10% Similarity=0.014 Sum_probs=17.5
Q ss_pred HHHhcCCCEEEEcCCCCCCc
Q psy11152 85 TLDAYDCDFCVHGALEVLVS 104 (112)
Q Consensus 85 fi~~l~~~~iv~G~D~~f~~ 104 (112)
+++++++|.+++|.=|.+|+
T Consensus 75 mv~~~~pD~viaGPaFnagr 94 (349)
T PF07355_consen 75 MVKKLKPDVVIAGPAFNAGR 94 (349)
T ss_pred HHHhcCCCEEEEcCCcCCch
Confidence 46899999999999998875
No 118
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=31.93 E-value=3.4e+02 Score=25.28 Aligned_cols=71 Identities=11% Similarity=-0.052 Sum_probs=44.9
Q ss_pred CceEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCC--CCcCHHHHHHHHhhccCCCEEEEc
Q psy11152 5 NLLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGP--PVFTQQERYKMVRGIKWVDEVVEG 76 (112)
Q Consensus 5 ~~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~--~i~s~~eR~~~l~~~~~vd~vi~~ 76 (112)
+++++..+|----||.|...|+....+..+-.++.+.++...=...++ -..+.++=...++++ ||+.|.+.
T Consensus 486 ~~~v~a~iGDgTf~HSG~~al~~AV~~~~nit~~IL~N~~tAMTGgQp~~g~i~v~~i~~~~~a~-Gv~~v~vv 558 (1159)
T PRK13030 486 TKHVFQNLGDGTYFHSGSLAIRQAVAAGANITYKILYNDAVAMTGGQPVDGSISVPQIARQVEAE-GVSRIVVV 558 (1159)
T ss_pred CCCEEEEeccchhhhcCHHHHHHHHhcCCCeEEEEEeCCcccccCCCCCCCCCCHHHHHHHHHhC-CCcEEEEe
Confidence 356777888888899999987666666555444444444332111111 245666656678889 89998874
No 119
>PF01232 Mannitol_dh: Mannitol dehydrogenase Rossmann domain; InterPro: IPR013131 Mannitol-1-phosphate 5-dehydrogenase catalyses the NAD-dependent reduction of mannitol-1-phosphate to fructose-6-phosphate [] as part of the phosphoenolpyruvate-dependent phosphotransferase system (PTS). The PTS facilitates the vectorial translocation of metabolisable carbohydrates to form the corresponding sugar phosphates, which are then converted to glycolytic intermediates []. Mannitol 2-dehydrogenase catalyses the NAD-dependent reduction of mannitol to fructose []. Several dehydrogenases have been shown [] to be evolutionary related, including mannitol-1-phosphate 5-dehydrogenase (1.1.1.17 from EC) (gene mtlD), mannitol 2-dehydrogenase (1.1.1.67 from EC) (gene mtlK); mannonate oxidoreductase (1.1.1.57 from EC) (fructuronate reductase) (gene uxuB); Escherichia coli hypothetical proteins ydfI and yeiQ; and yeast hypothetical protein YEL070w. This domain has a Rossmann-type fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1M2W_A 1LJ8_A 3H2Z_A.
Probab=31.93 E-value=20 Score=24.46 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHHHHcCC--eEEEEEecC
Q psy11152 18 VHFGHANNLRQAKELGN--YLVVGVHTD 43 (112)
Q Consensus 18 ~H~GH~~ll~~a~~~~~--~lvv~v~~d 43 (112)
||+||+.++.++.+.+. --++++...
T Consensus 11 f~Rgh~a~i~~ll~~~~~~~gi~~V~~~ 38 (151)
T PF01232_consen 11 FHRGHQAFIDELLNQGGFDWGIVDVNPR 38 (151)
T ss_dssp HHHHTHHCHHHHHCCTTTCEEEEECEHC
T ss_pred HHHHHHHHHHHHHhccCCceEEEEEEec
Confidence 69999998888888753 356666553
No 120
>PRK14362 Maf-like protein; Provisional
Probab=31.16 E-value=1.2e+02 Score=22.13 Aligned_cols=43 Identities=14% Similarity=-0.082 Sum_probs=26.3
Q ss_pred HHHHHHHHhhccCCCEEEE---cCCC-----CCHHHHHH-----------hcCCCEEEEcCCC
Q psy11152 57 QQERYKMVRGIKWVDEVVE---GAPY-----VTTLETLD-----------AYDCDFCVHGALE 100 (112)
Q Consensus 57 ~~eR~~~l~~~~~vd~vi~---~~~~-----~~~~~fi~-----------~l~~~~iv~G~D~ 100 (112)
..-|.++|+++ |++..+. ++++ .+|.+++. +..++.+|+|.|-
T Consensus 20 SprR~eLL~~~-g~~f~v~~~~~dEe~~~~~~~p~~~v~~lA~~KA~~v~~~~~~~~VI~ADT 81 (207)
T PRK14362 20 SPRRREFLEQM-GLPFEVILPGAAEPSPIEGEQPEAYARRAAEAKARAVAADHAGRLVIAADT 81 (207)
T ss_pred CHHHHHHHHHC-CCCcEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCEEEEeCe
Confidence 45688899999 7876554 3331 34666641 2235667777774
No 121
>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain []. This family includes two bacterial proteins A6FXE2 from SWISSPROT and A1ZGE7 from SWISSPROT. This suggests that some bacteria may possess vault particles. ; PDB: 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y.
Probab=30.37 E-value=15 Score=24.81 Aligned_cols=22 Identities=27% Similarity=0.166 Sum_probs=18.3
Q ss_pred EecccCcCCHHHHHHHHHHHHc
Q psy11152 11 LQSNYDMVHFGHANNLRQAKEL 32 (112)
Q Consensus 11 ~~G~FD~~H~GH~~ll~~a~~~ 32 (112)
+.=.||-||..-..+||+|.=-
T Consensus 65 a~~~Fd~FHknSa~iiR~aVFg 86 (118)
T PF11978_consen 65 ASVTFDDFHKNSARIIRQAVFG 86 (118)
T ss_dssp HTSHHHHHHHHHHHHHHHHHST
T ss_pred hcCcHHHHcccHHHHHHHHhcC
Confidence 3447999999999999999853
No 122
>PRK00148 Maf-like protein; Reviewed
Probab=29.55 E-value=1.4e+02 Score=21.44 Aligned_cols=42 Identities=19% Similarity=0.097 Sum_probs=25.0
Q ss_pred HHHHHHHhhccCCCEEEE---cCCC----CCHHHHHH-----------hcCCCEEEEcCCC
Q psy11152 58 QERYKMVRGIKWVDEVVE---GAPY----VTTLETLD-----------AYDCDFCVHGALE 100 (112)
Q Consensus 58 ~eR~~~l~~~~~vd~vi~---~~~~----~~~~~fi~-----------~l~~~~iv~G~D~ 100 (112)
.-|.++|+++ |++..+. +|+. .+|.+++. +..++.+|+|.|-
T Consensus 10 prR~elL~~~-g~~f~~~~~~idE~~~~~~~p~~~v~~lA~~KA~~v~~~~~~~~vI~aDT 69 (194)
T PRK00148 10 PARLKLLRLA-GIPPLVVVSHVDEDAIAASSPSELVQALARAKAEAVAENAPDAVVLGCDS 69 (194)
T ss_pred HHHHHHHHHC-CCCeEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 5678888888 6876554 3332 35666641 1235567777664
No 123
>PRK10490 sensor protein KdpD; Provisional
Probab=29.05 E-value=1.3e+02 Score=26.70 Aligned_cols=77 Identities=12% Similarity=0.024 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCCe-----EEEEEecCcccccCCCCCCcCHHHHHHHHhhccCCCEEEEcCCC--CCHHHHHHhcCCCEE
Q psy11152 22 HANNLRQAKELGNY-----LVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVVEGAPY--VTTLETLDAYDCDFC 94 (112)
Q Consensus 22 H~~ll~~a~~~~~~-----lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~~~vd~vi~~~~~--~~~~~fi~~l~~~~i 94 (112)
-..+|+++.++|+. .++-|.+........ ..-....+-+++.+++ |.+.+.+...+ ..-.+|.+..+++.|
T Consensus 263 ~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~-~~~~~l~~~~~lA~~l-Ga~~~~~~~~dva~~i~~~A~~~~vt~I 340 (895)
T PRK10490 263 SEKLVRTAARLAARLGSVWHAVYVETPRLHRLPE-KKRRAILSALRLAQEL-GAETATLSDPAEEKAVLRYAREHNLGKI 340 (895)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCH-HHHHHHHHHHHHHHHc-CCEEEEEeCCCHHHHHHHHHHHhCCCEE
Confidence 36889998888643 233333221000000 0000111223466678 67755553322 233467789999999
Q ss_pred EEcCCC
Q psy11152 95 VHGALE 100 (112)
Q Consensus 95 v~G~D~ 100 (112)
|+|.--
T Consensus 341 ViG~s~ 346 (895)
T PRK10490 341 IIGRRA 346 (895)
T ss_pred EECCCC
Confidence 999763
No 124
>PRK15452 putative protease; Provisional
Probab=28.84 E-value=2e+02 Score=23.46 Aligned_cols=23 Identities=9% Similarity=-0.036 Sum_probs=13.8
Q ss_pred HHHHhcCCCEEEEcCCCCCCccc
Q psy11152 84 ETLDAYDCDFCVHGALEVLVSLE 106 (112)
Q Consensus 84 ~fi~~l~~~~iv~G~D~~f~~~~ 106 (112)
.|+++++++-++...+-++..+.
T Consensus 128 ~f~~~lG~~rvvLSrELsl~EI~ 150 (443)
T PRK15452 128 KFWQQMGLTRVILSRELSLEEIE 150 (443)
T ss_pred HHHHHCCCcEEEECCcCCHHHHH
Confidence 45566677777766665554443
No 125
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=28.70 E-value=4e+02 Score=24.86 Aligned_cols=71 Identities=10% Similarity=-0.099 Sum_probs=41.9
Q ss_pred CceEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCC-C-CcCHHHHHHHHhhccCCCEEEEc
Q psy11152 5 NLLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGP-P-VFTQQERYKMVRGIKWVDEVVEG 76 (112)
Q Consensus 5 ~~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~-~-i~s~~eR~~~l~~~~~vd~vi~~ 76 (112)
+++++..+|----||.|...|+.......+-.++.+.++...=...++ + ..+..+=.+.++++ ||+.|++.
T Consensus 499 ~~hv~a~iGDgTffHSG~~al~~AV~~~~nit~~IL~N~~vAMTGgQ~~~g~~~~~~i~~~~~a~-GV~~v~vv 571 (1165)
T PRK09193 499 EKHVFQNLGDGTYFHSGLLAIRAAVAAGVNITYKILYNDAVAMTGGQPVDGGLSVPQITRQLAAE-GVKRIVVV 571 (1165)
T ss_pred CCcEEEEeccccchhcCHHHHHHHHhcCCCeEEEEEeCCcccccCCCCCCCCcchhhHHHHHHhC-CCCEEEEe
Confidence 456777889888899999995555555444334444444322111111 1 23434334677788 89998875
No 126
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=28.64 E-value=36 Score=26.39 Aligned_cols=59 Identities=15% Similarity=0.182 Sum_probs=39.0
Q ss_pred ccCcCC-----------------HHHHHHHHH----HHHc-CCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhccCCC
Q psy11152 14 NYDMVH-----------------FGHANNLRQ----AKEL-GNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVD 71 (112)
Q Consensus 14 ~FD~~H-----------------~GH~~ll~~----a~~~-~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~~~vd 71 (112)
.||+-| -|-.+++.- |... +|.+.+=+++||......++...++++=..++++++.++
T Consensus 193 I~DpSHsvQ~pg~~~~~~~g~~s~G~Re~V~~larAAvA~GaDGlfiEvHpdP~~AlsDg~q~l~~~~l~~ll~~l~~i~ 272 (290)
T PLN03033 193 VADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGIFMEVHDDPLSAPVDGPTQWPLRHLEELLEELIAIA 272 (290)
T ss_pred EEeCCccccCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCEEEEEecCCccccCCCcccCcCHHHHHHHHHHHHHHH
Confidence 589999 477777754 3333 378999999999654445555566666666777665443
Q ss_pred E
Q psy11152 72 E 72 (112)
Q Consensus 72 ~ 72 (112)
.
T Consensus 273 ~ 273 (290)
T PLN03033 273 R 273 (290)
T ss_pred H
Confidence 3
No 127
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=28.34 E-value=1.1e+02 Score=19.06 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=28.2
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcC-CeEEEEEecCcc
Q psy11152 8 ATSLQSNYDMVHFGHANNLRQAKELG-NYLVVGVHTDEE 45 (112)
Q Consensus 8 ~v~~~G~FD~~H~GH~~ll~~a~~~~-~~lvv~v~~d~~ 45 (112)
.+.++|.|+.......+.+.++.+.- +...++++.++.
T Consensus 20 ~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~~~~ 58 (102)
T cd03066 20 DIKLIGYFKSEDSEHYKAFEEAAEEFHPYIKFFATFDSK 58 (102)
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHhhhcCCEEEEECcHH
Confidence 46677999998888888888766654 556777777654
No 128
>PRK02478 Maf-like protein; Reviewed
Probab=28.24 E-value=1.6e+02 Score=21.32 Aligned_cols=17 Identities=6% Similarity=-0.023 Sum_probs=12.3
Q ss_pred HHHHHHHhhccCCCEEEE
Q psy11152 58 QERYKMVRGIKWVDEVVE 75 (112)
Q Consensus 58 ~eR~~~l~~~~~vd~vi~ 75 (112)
.-|.++|+++ |++..+.
T Consensus 12 prR~elL~~~-g~~f~v~ 28 (199)
T PRK02478 12 PFRRALLENA-GLEFSAA 28 (199)
T ss_pred HHHHHHHHHC-CCCeEEe
Confidence 5678888888 6776554
No 129
>PRK14366 Maf-like protein; Provisional
Probab=27.69 E-value=1.5e+02 Score=21.49 Aligned_cols=43 Identities=21% Similarity=0.094 Sum_probs=25.3
Q ss_pred HHHHHHHHhhccCC-C-EEEE--cCCC----CCHHHHHH-----------hcCCCEEEEcCCC
Q psy11152 57 QQERYKMVRGIKWV-D-EVVE--GAPY----VTTLETLD-----------AYDCDFCVHGALE 100 (112)
Q Consensus 57 ~~eR~~~l~~~~~v-d-~vi~--~~~~----~~~~~fi~-----------~l~~~~iv~G~D~ 100 (112)
..-|.++|+++ |+ . .++. +|+. .+|.+++. +..++.+|+|.|-
T Consensus 13 SprR~elL~~~-G~~~~~v~~~~iDE~~~~~~~p~~~v~~lA~~KA~~v~~~~~~~~vI~ADT 74 (195)
T PRK14366 13 SKQRLALLEQI-GVVPGEIVSPDIDESPLKKELPKDYSIRMAKEKAEKVQSLRPDKFVLGADT 74 (195)
T ss_pred CHHHHHHHHhC-CCCCCEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCEEEEeCe
Confidence 35688899998 67 3 3444 4332 35666631 2245667777774
No 130
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=27.04 E-value=26 Score=24.19 Aligned_cols=24 Identities=17% Similarity=0.044 Sum_probs=15.1
Q ss_pred HHHHHHhc--CCCEEEEcCCCCCCccccc
Q psy11152 82 TLETLDAY--DCDFCVHGALEVLVSLESS 108 (112)
Q Consensus 82 ~~~fi~~l--~~~~iv~G~D~~f~~~~~~ 108 (112)
..-|.+.+ ++..+++| +++..++.
T Consensus 84 ~d~Fyke~~DGvn~i~~g---~~~~~~~~ 109 (136)
T PF14781_consen 84 SDLFYKEVPDGVNAIVIG---KLGDIPSP 109 (136)
T ss_pred chhhhhhCccceeEEEEE---ecCCCCCc
Confidence 44455543 68888888 66665544
No 131
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=26.50 E-value=5.4e+02 Score=24.11 Aligned_cols=72 Identities=13% Similarity=-0.074 Sum_probs=43.4
Q ss_pred CceEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCccc-ccCCC-CCCcCHHHHHHHHhhccCCCEEEEcC
Q psy11152 5 NLLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEI-SKHKG-PPVFTQQERYKMVRGIKWVDEVVEGA 77 (112)
Q Consensus 5 ~~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~-~~~k~-~~i~s~~eR~~~l~~~~~vd~vi~~~ 77 (112)
+++++..+|----+|.|...|........+-.++.+.++... ..... +-..+.++=...++++ ||+.|++.+
T Consensus 513 ~~hv~aniGDgTffHSG~~alr~AV~~~~nit~kIL~N~avAMTGgQp~~G~~~v~~i~~~~~a~-GV~~v~vv~ 586 (1186)
T PRK13029 513 RRHVFQNLGDGTYFHSGLLAIRQAIAAGVNITYKILYNDAVAMTGGQPVDGVLTVPQIARQVHAE-GVRRIVVVT 586 (1186)
T ss_pred CCCEEEEeccccchhcCHHHHHHHHhcCCCEEEEEEeCcchhccCCCCCCCcCCHHHHHHHHHhC-CccEEEEeC
Confidence 456778888888899999995554444444333333343321 11111 1245666555688899 899988854
No 132
>TIGR00608 radc DNA repair protein radc. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.48 E-value=93 Score=22.89 Aligned_cols=39 Identities=10% Similarity=0.077 Sum_probs=31.7
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCccc
Q psy11152 8 ATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEI 46 (112)
Q Consensus 8 ~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~ 46 (112)
..+..|+-|....-=.++++.|.+....-++.+++.|+-
T Consensus 134 ~~i~~Gt~~~~~v~pReI~~~Al~~~A~~vIlaHNHPSG 172 (218)
T TIGR00608 134 EVVFIGTVNHVPVHPREIFKEALKLSASALILAHNHPSG 172 (218)
T ss_pred EEeecCCCCeEEEcHHHHHHHHHHhhCCeEEEEeecCCC
Confidence 346789999888777899999999877678888888853
No 133
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=26.38 E-value=3.4e+02 Score=21.68 Aligned_cols=64 Identities=16% Similarity=0.006 Sum_probs=33.5
Q ss_pred HHHHHHHHHcCCeEEEEEe-cCcccccCCCCCCcCHHHHH--HHHhhccCCCEEEEcCCCCCHHH-HHHhcCCCEEEEcC
Q psy11152 23 ANNLRQAKELGNYLVVGVH-TDEEISKHKGPPVFTQQERY--KMVRGIKWVDEVVEGAPYVTTLE-TLDAYDCDFCVHGA 98 (112)
Q Consensus 23 ~~ll~~a~~~~~~lvv~v~-~d~~~~~~k~~~i~s~~eR~--~~l~~~~~vd~vi~~~~~~~~~~-fi~~l~~~~iv~G~ 98 (112)
+.+|+.|.+.++...|.+. +.|. ..-.|+ ..|.+. |++..++.| +..- ++++-++|.+++|.
T Consensus 181 l~vi~~A~~~gk~~~V~v~EtRP~----------~qG~rlta~eL~~~-GI~vtlI~D---sav~~~M~~~~Vd~VivGA 246 (356)
T PRK08334 181 GAVLRVMHKDGTLKLLWVDETRPV----------LQGARLSAWEYHYD-GIPLKLISD---NMAGFVMQQGKVDAIIVGA 246 (356)
T ss_pred HHHHHHHHHcCCeEEEEECCCCch----------hhHHHHHHHHHHHC-CCCEEEEeh---hHHHHHhhhcCCCEEEECc
Confidence 5678888888775444443 2221 122333 124444 676666554 2332 33444567777766
Q ss_pred CC
Q psy11152 99 LE 100 (112)
Q Consensus 99 D~ 100 (112)
|-
T Consensus 247 d~ 248 (356)
T PRK08334 247 DR 248 (356)
T ss_pred cE
Confidence 64
No 134
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=25.77 E-value=3.3e+02 Score=21.43 Aligned_cols=34 Identities=18% Similarity=0.098 Sum_probs=19.4
Q ss_pred eEEEEecccCcC-CHHH---HHHHHHHHHcCCeEEEEE
Q psy11152 7 LATSLQSNYDMV-HFGH---ANNLRQAKELGNYLVVGV 40 (112)
Q Consensus 7 ~~v~~~G~FD~~-H~GH---~~ll~~a~~~~~~lvv~v 40 (112)
.++++.++-=.+ ..|+ +..|+.|.+.++...|.+
T Consensus 138 ~~ILThcnsg~la~~~~gTal~~l~~A~~~gk~f~V~v 175 (329)
T PRK06371 138 ARILTHCNAGALAVVDWGTALAPIRIAHRNGKNIFVFV 175 (329)
T ss_pred CEEEEeCCCCcceeccchhHHHHHHHHHHcCCeeEEEE
Confidence 356666543222 2222 678899998877644433
No 135
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=25.59 E-value=3.1e+02 Score=20.98 Aligned_cols=25 Identities=20% Similarity=0.077 Sum_probs=14.1
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCeE
Q psy11152 8 ATSLQSNYDMVHFGHANNLRQAKELGNYL 36 (112)
Q Consensus 8 ~v~~~G~FD~~H~GH~~ll~~a~~~~~~l 36 (112)
++++.|+= .-=+..|+.|.+.++..
T Consensus 112 ~ILTh~~S----~tv~~~l~~A~~~gk~~ 136 (275)
T PRK08335 112 VIITHSFS----SAVLEILKTAKRKGKRF 136 (275)
T ss_pred EEEEECCc----HHHHHHHHHHHHcCCce
Confidence 55666532 12246677777776643
No 136
>PHA02540 61 DNA primase; Provisional
Probab=25.32 E-value=3.4e+02 Score=21.47 Aligned_cols=71 Identities=10% Similarity=0.056 Sum_probs=39.6
Q ss_pred ceEEEEecccCcCCHHHHHHHHHHHHc------------CCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhccCCCEE
Q psy11152 6 LLATSLQSNYDMVHFGHANNLRQAKEL------------GNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEV 73 (112)
Q Consensus 6 ~~~v~~~G~FD~~H~GH~~ll~~a~~~------------~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~~~vd~v 73 (112)
...+++=|.||.+. |+.|.+. ++++++.+-.|+. .+ -.-.++++|.+. |...+
T Consensus 223 ~~vilvEGYmDvi~------i~naVAtlGTaLT~~~~~~~~~vvl~~D~Da~---~~-----at~r~~~~l~~~-g~~v~ 287 (337)
T PHA02540 223 KTVYVVEGPIDSLF------LPNSIAITGGDLDLNEVPFKDTRVWVLDNEPR---HP-----DTIKRISKLIDA-GEKVV 287 (337)
T ss_pred CEEEEEeCCcceee------eccceeeCccccCHhHhCccceEEEEECCchh---HH-----HHHHHHHHHHHC-CCeEE
Confidence 45778999999875 3444432 2334555544421 11 124456666666 66555
Q ss_pred EE-cCCC--CCHHHHHHhcCC
Q psy11152 74 VE-GAPY--VTTLETLDAYDC 91 (112)
Q Consensus 74 i~-~~~~--~~~~~fi~~l~~ 91 (112)
+. ..|| .+|.+|+++.++
T Consensus 288 v~~~~~~~~kDpde~i~~~G~ 308 (337)
T PHA02540 288 IWDKCPWPSKDINDMIMKGGA 308 (337)
T ss_pred EecCCCCCCcCHHHHHHhcCC
Confidence 55 3322 567888876554
No 137
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=25.13 E-value=70 Score=26.22 Aligned_cols=20 Identities=10% Similarity=0.039 Sum_probs=17.5
Q ss_pred HHHhcCCCEEEEcCCCCCCc
Q psy11152 85 TLDAYDCDFCVHGALEVLVS 104 (112)
Q Consensus 85 fi~~l~~~~iv~G~D~~f~~ 104 (112)
+++++++|.+++|.=|.+|+
T Consensus 71 mv~k~~pDv~iaGPaFNagr 90 (431)
T TIGR01917 71 MIKGANPDIFIAGPAFNAGR 90 (431)
T ss_pred HHHhcCCCEEEEcCccCCcc
Confidence 46899999999999998875
No 138
>PRK00078 Maf-like protein; Reviewed
Probab=24.89 E-value=2e+02 Score=20.57 Aligned_cols=17 Identities=24% Similarity=0.276 Sum_probs=11.3
Q ss_pred HHHHHHHhhccCCCEEEE
Q psy11152 58 QERYKMVRGIKWVDEVVE 75 (112)
Q Consensus 58 ~eR~~~l~~~~~vd~vi~ 75 (112)
.-|.++|+++ |++..+.
T Consensus 10 prR~elL~~~-g~~f~v~ 26 (192)
T PRK00078 10 ERRQELLKRI-LEDFQVI 26 (192)
T ss_pred HHHHHHHHhC-CCCeEEe
Confidence 4577788887 6666543
No 139
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=24.84 E-value=1.6e+02 Score=18.45 Aligned_cols=17 Identities=18% Similarity=0.534 Sum_probs=8.5
Q ss_pred HHHHHHHhhccCCCEEEE
Q psy11152 58 QERYKMVRGIKWVDEVVE 75 (112)
Q Consensus 58 ~eR~~~l~~~~~vd~vi~ 75 (112)
++|.++++++ |.+.++.
T Consensus 24 ~~k~~~~~~~-Ga~~~~~ 40 (130)
T PF00107_consen 24 EEKLELAKEL-GADHVID 40 (130)
T ss_dssp HHHHHHHHHT-TESEEEE
T ss_pred HHHHHHHHhh-ccccccc
Confidence 3445555555 4555544
No 140
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=24.71 E-value=72 Score=26.15 Aligned_cols=20 Identities=15% Similarity=0.056 Sum_probs=17.6
Q ss_pred HHHhcCCCEEEEcCCCCCCc
Q psy11152 85 TLDAYDCDFCVHGALEVLVS 104 (112)
Q Consensus 85 fi~~l~~~~iv~G~D~~f~~ 104 (112)
+++++++|.+++|.=|.+|+
T Consensus 71 mv~k~~pDv~iaGPaFNagr 90 (431)
T TIGR01918 71 MLKDKEPDIFIAGPAFNAGR 90 (431)
T ss_pred HHHhcCCCEEEEcCccCCcc
Confidence 46899999999999998875
No 141
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=23.93 E-value=1.6e+02 Score=22.75 Aligned_cols=57 Identities=16% Similarity=0.279 Sum_probs=37.6
Q ss_pred ccCcCC------------HHHHHHHHH----HHHc-CCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhccCC
Q psy11152 14 NYDMVH------------FGHANNLRQ----AKEL-GNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWV 70 (112)
Q Consensus 14 ~FD~~H------------~GH~~ll~~----a~~~-~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~~~v 70 (112)
.||+-| -|..+++.- |... +|-+.+=+++||......++...++++=.+++++++.+
T Consensus 195 i~DpSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaDGl~iEvHpdP~~AlsDg~q~l~~~~~~~l~~~l~~i 268 (281)
T PRK12457 195 IFDVTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLAGLFLEAHPDPDRARCDGPSALPLDQLEPFLSQVKAL 268 (281)
T ss_pred EEeCCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEEEecCCccccCCCcccccCHHHHHHHHHHHHHH
Confidence 589999 587777654 3333 37899999999865444555556666666666666433
No 142
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=23.43 E-value=1.9e+02 Score=21.19 Aligned_cols=37 Identities=19% Similarity=0.278 Sum_probs=29.9
Q ss_pred ceEEEEecccC-cCCHHHHHHHHHHHHcC-C--eEEEEEec
Q psy11152 6 LLATSLQSNYD-MVHFGHANNLRQAKELG-N--YLVVGVHT 42 (112)
Q Consensus 6 ~~~v~~~G~FD-~~H~GH~~ll~~a~~~~-~--~lvv~v~~ 42 (112)
-++.++.|-+| .++.|-++..+++.+.. . +|+++...
T Consensus 229 vP~l~v~Gw~D~~~~~~~~~~~~~l~~~~~~~~~Liigpw~ 269 (272)
T PF02129_consen 229 VPVLIVGGWYDTLFLRGALRAYEALRAPGSKPQRLIIGPWT 269 (272)
T ss_dssp SEEEEEEETTCSSTSHHHHHHHHHHCTTSTC-EEEEEESES
T ss_pred CCEEEecccCCcccchHHHHHHHHhhcCCCCCCEEEEeCCC
Confidence 46789999999 99999888888888876 3 68887654
No 143
>PRK12569 hypothetical protein; Provisional
Probab=23.00 E-value=65 Score=24.38 Aligned_cols=51 Identities=18% Similarity=0.216 Sum_probs=32.7
Q ss_pred cCCHHHHHHHHHHHHcCCe--EEEEEecCcc-ccc-CCCC-CCcCHHHHHHHHhhc
Q psy11152 17 MVHFGHANNLRQAKELGNY--LVVGVHTDEE-ISK-HKGP-PVFTQQERYKMVRGI 67 (112)
Q Consensus 17 ~~H~GH~~ll~~a~~~~~~--lvv~v~~d~~-~~~-~k~~-~i~s~~eR~~~l~~~ 67 (112)
|+|-|--..++++.++|.. +-||-++..- ... .+.. .+.+.+-+..++.++
T Consensus 40 G~HAGDp~~M~~tv~lA~~~~V~IGAHPsyPD~~gFGRr~m~~s~~el~~~v~yQi 95 (245)
T PRK12569 40 GFHAGDPNIMRRTVELAKAHGVGIGAHPGFRDLVGFGRRHINASPQELVNDVLYQL 95 (245)
T ss_pred cccCCCHHHHHHHHHHHHHcCCEeccCCCCCcCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 6899999999999999853 6777776321 111 1222 466666665555555
No 144
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=22.70 E-value=3e+02 Score=19.77 Aligned_cols=19 Identities=21% Similarity=0.448 Sum_probs=11.3
Q ss_pred HHHHHHHHcCCeEEEEEec
Q psy11152 24 NNLRQAKELGNYLVVGVHT 42 (112)
Q Consensus 24 ~ll~~a~~~~~~lvv~v~~ 42 (112)
+.++++++.+|-+||..+.
T Consensus 166 ~~i~~lr~~~D~vIv~~H~ 184 (239)
T cd07381 166 ADIAEAKKKADIVIVSLHW 184 (239)
T ss_pred HHHHHHhhcCCEEEEEecC
Confidence 4455555556666666665
No 145
>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis. Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.
Probab=22.63 E-value=2.2e+02 Score=22.12 Aligned_cols=52 Identities=17% Similarity=0.244 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCCeEEEEEecCcc------c--ccCC-CCCCcCHHHHHHHHhhccCCCEEE
Q psy11152 23 ANNLRQAKELGNYLVVGVHTDEE------I--SKHK-GPPVFTQQERYKMVRGIKWVDEVV 74 (112)
Q Consensus 23 ~~ll~~a~~~~~~lvv~v~~d~~------~--~~~k-~~~i~s~~eR~~~l~~~~~vd~vi 74 (112)
++++++|++.+-.+.+-+++... . ...| .||+-+.++|..+++.++.+|.+-
T Consensus 162 ~~~i~~ak~~g~~vt~ev~phhL~l~~~~~~~~~~k~~PPLR~~~dr~aL~~~l~~id~i~ 222 (344)
T cd01316 162 INLIRLAKARGLKVTCEVSPHHLFLSQDDLPRGQYEVRPFLPTREDQEALWENLDYIDCFA 222 (344)
T ss_pred HHHHHHHHHCCCcEEEEechHHeeccHHHhhcCCceeCCCCcCHHHHHHHHHHHhcCCEEE
Confidence 45677777766555554444221 1 1122 358999999999999997666433
No 146
>PRK01839 Maf-like protein; Reviewed
Probab=22.20 E-value=2.4e+02 Score=20.55 Aligned_cols=18 Identities=11% Similarity=0.091 Sum_probs=12.6
Q ss_pred HHHHHHHHhhccCCCEEEE
Q psy11152 57 QQERYKMVRGIKWVDEVVE 75 (112)
Q Consensus 57 ~~eR~~~l~~~~~vd~vi~ 75 (112)
..-|.++|+++ |++..++
T Consensus 18 SprR~elL~~~-gi~f~v~ 35 (209)
T PRK01839 18 SPRRQELLQQL-GVRFELL 35 (209)
T ss_pred CHHHHHHHHHC-CCCeEEe
Confidence 35677888888 6776544
No 147
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=22.12 E-value=4e+02 Score=21.03 Aligned_cols=15 Identities=33% Similarity=0.266 Sum_probs=10.3
Q ss_pred HHHHHHHHcCCeEEE
Q psy11152 24 NNLRQAKELGNYLVV 38 (112)
Q Consensus 24 ~ll~~a~~~~~~lvv 38 (112)
.+|+.|.+.++..-|
T Consensus 169 ~~i~~A~~~gk~~~V 183 (344)
T PRK05720 169 APIYAAKEKGIDIHV 183 (344)
T ss_pred HHHHHHHHcCCceEE
Confidence 478888887765433
No 148
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=22.12 E-value=1.8e+02 Score=22.27 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=35.4
Q ss_pred ccCcCC------------HHHHHHHHH----HHHc-CCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhcc
Q psy11152 14 NYDMVH------------FGHANNLRQ----AKEL-GNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIK 68 (112)
Q Consensus 14 ~FD~~H------------~GH~~ll~~----a~~~-~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~~ 68 (112)
.||+-| -|-.+++.- |... +|-+.+=+++||......++...++++=.+++++++
T Consensus 179 i~DpSHsvq~pg~~g~~s~G~r~~v~~la~AAvA~GaDGl~iEvHpdP~~AlsDg~q~l~~~~~~~ll~~l~ 250 (258)
T TIGR01362 179 IFDATHSVQQPGGLGGASGGLREFVPTLARAAVAVGIDGLFMETHPDPKNAKSDGPNMLPLSELEGLLEKLL 250 (258)
T ss_pred EEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCEEEEEeCCCccccCCCccccCCHHHHHHHHHHHH
Confidence 579999 477777654 3333 377999999988644344554555565556666653
No 149
>KOG1905|consensus
Probab=21.99 E-value=1.1e+02 Score=24.16 Aligned_cols=51 Identities=29% Similarity=0.416 Sum_probs=33.6
Q ss_pred cccCcCCH--HHHHHHHHHHHcCCeEEE----EEecCcccccCCCC-CCcCHHHHHHH
Q psy11152 13 SNYDMVHF--GHANNLRQAKELGNYLVV----GVHTDEEISKHKGP-PVFTQQERYKM 63 (112)
Q Consensus 13 G~FD~~H~--GH~~ll~~a~~~~~~lvv----~v~~d~~~~~~k~~-~i~s~~eR~~~ 63 (112)
=.||+.|. +-.+-|-++++.++.++| ||.+...++-.+|+ -++|++++-+-
T Consensus 33 e~~D~~e~l~~kv~elA~li~~sk~lvv~tGAGISTaa~IPDfRGp~GVWTL~~kG~~ 90 (353)
T KOG1905|consen 33 EEFDPPEVLRTKVEELAQLIQQSKHLVVYTGAGISTAAGIPDFRGPQGVWTLQQKGKD 90 (353)
T ss_pred cccCCHHHHHHHHHHHHHHHhhCCcEEEEeCCccccccCCCCccCCCceeehhhcCcc
Confidence 46888875 444445667777888777 66665555556666 58888877553
No 150
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=21.78 E-value=4e+02 Score=20.94 Aligned_cols=18 Identities=28% Similarity=0.202 Sum_probs=12.0
Q ss_pred HHHHHHHHHcCCeEEEEE
Q psy11152 23 ANNLRQAKELGNYLVVGV 40 (112)
Q Consensus 23 ~~ll~~a~~~~~~lvv~v 40 (112)
+.+|+.|.+.++...|.+
T Consensus 168 l~~l~~A~~~g~~~~V~v 185 (331)
T TIGR00512 168 LGVIRSAHEKGRLEHVYA 185 (331)
T ss_pred HHHHHHHHHcCCceEEEE
Confidence 468888888876544433
No 151
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=21.44 E-value=2.5e+02 Score=21.22 Aligned_cols=13 Identities=23% Similarity=0.133 Sum_probs=8.1
Q ss_pred HHHhhccCCCEEEE
Q psy11152 62 KMVRGIKWVDEVVE 75 (112)
Q Consensus 62 ~~l~~~~~vd~vi~ 75 (112)
+.+++. ++|.+-+
T Consensus 235 ~~l~~~-G~d~i~v 247 (327)
T cd02803 235 KALEEA-GVDALHV 247 (327)
T ss_pred HHHHHc-CCCEEEe
Confidence 344555 6888765
No 152
>PRK01441 Maf-like protein; Reviewed
Probab=21.36 E-value=2.3e+02 Score=20.54 Aligned_cols=13 Identities=8% Similarity=0.255 Sum_probs=10.1
Q ss_pred HHHHHHHhhccCCC
Q psy11152 58 QERYKMVRGIKWVD 71 (112)
Q Consensus 58 ~eR~~~l~~~~~vd 71 (112)
.-|.++|+++ |++
T Consensus 14 prR~elL~~~-Gi~ 26 (207)
T PRK01441 14 PRRVELLNQA-GIE 26 (207)
T ss_pred HHHHHHHHhc-CCC
Confidence 5678888998 675
No 153
>PRK00024 hypothetical protein; Reviewed
Probab=21.31 E-value=1.4e+02 Score=21.98 Aligned_cols=38 Identities=8% Similarity=0.024 Sum_probs=31.2
Q ss_pred EEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCccc
Q psy11152 9 TSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEI 46 (112)
Q Consensus 9 v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~ 46 (112)
.+..|+-|....-=.++++.|......-++.+++.|+-
T Consensus 141 ~i~~Gt~~~~~v~pRei~~~Al~~~A~~iIl~HNHPSG 178 (224)
T PRK00024 141 ELFIGTLNSSIVHPREIVKRALKLNAAALILAHNHPSG 178 (224)
T ss_pred EeeeecCCeEEEcHHHHHHHHHHhhccceEEEecCCCC
Confidence 46789999888777899999999877678888888853
No 154
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=21.13 E-value=98 Score=23.60 Aligned_cols=42 Identities=7% Similarity=-0.201 Sum_probs=30.6
Q ss_pred HHHHHHhhccCCCEEEEcCCC-CC----H---HHHHHhcCCCEEEEcCCCC
Q psy11152 59 ERYKMVRGIKWVDEVVEGAPY-VT----T---LETLDAYDCDFCVHGALEV 101 (112)
Q Consensus 59 eR~~~l~~~~~vd~vi~~~~~-~~----~---~~fi~~l~~~~iv~G~D~~ 101 (112)
|.++.+-++ |++.|++.+-. .. | ++.+++++++.|+++-|.+
T Consensus 95 e~i~~~l~~-Ga~rViigT~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k 144 (262)
T PLN02446 95 ENAMSYLDA-GASHVIVTSYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCR 144 (262)
T ss_pred HHHHHHHHc-CCCEEEEchHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEE
Confidence 777777788 89999984321 11 3 2345788999999999987
No 155
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=20.86 E-value=3.4e+02 Score=21.88 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=13.2
Q ss_pred CcCCHHHHHHHHHHHHc
Q psy11152 16 DMVHFGHANNLRQAKEL 32 (112)
Q Consensus 16 D~~H~GH~~ll~~a~~~ 32 (112)
+.+|+||.-.+..++.+
T Consensus 45 ~sLHlGhlv~l~~l~~l 61 (410)
T PRK13354 45 PSLHIGHLVPLMKLKRF 61 (410)
T ss_pred CCcchhhHHHHHHHHHH
Confidence 35999998878777665
No 156
>KOG4175|consensus
Probab=20.66 E-value=1.5e+02 Score=22.30 Aligned_cols=59 Identities=24% Similarity=0.443 Sum_probs=40.2
Q ss_pred EEEecccCcC-CHHHHHHHHHHHHcCCe--EEEEEecCccc---c--cCCC----C--CCcCHHHHHHHHhhc
Q psy11152 9 TSLQSNYDMV-HFGHANNLRQAKELGNY--LVVGVHTDEEI---S--KHKG----P--PVFTQQERYKMVRGI 67 (112)
Q Consensus 9 v~~~G~FD~~-H~GH~~ll~~a~~~~~~--lvv~v~~d~~~---~--~~k~----~--~i~s~~eR~~~l~~~ 67 (112)
++..|++.|+ ..|-.+.|+.|++.+.. +++-+.+.+.. + ++.+ + ...+.+||+++|.+.
T Consensus 98 IiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gislvpLvaPsTtdeRmell~~~ 170 (268)
T KOG4175|consen 98 IILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISLVPLVAPSTTDERMELLVEA 170 (268)
T ss_pred eeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCceEEEeeCCCChHHHHHHHHHh
Confidence 4677999985 67999999999998643 55555554421 1 1122 1 357789999999776
No 157
>PRK00886 2-phosphosulfolactate phosphatase; Provisional
Probab=20.54 E-value=1.1e+02 Score=22.83 Aligned_cols=41 Identities=12% Similarity=-0.044 Sum_probs=24.1
Q ss_pred CCCEEEEcCCCCCHHHHHHhcC-CCEEEEcCC-------CCCCcccccc
Q psy11152 69 WVDEVVEGAPYVTTLETLDAYD-CDFCVHGAL-------EVLVSLESSV 109 (112)
Q Consensus 69 ~vd~vi~~~~~~~~~~fi~~l~-~~~iv~G~D-------~~f~~~~~~~ 109 (112)
|...|++...-..+.++-+++. .+++..|+. |.|||-|..+
T Consensus 41 Ga~~V~P~~~~eeA~~~~~~~~~~~~ll~GEr~g~~i~GFd~gNSP~e~ 89 (240)
T PRK00886 41 GAEAVIPFSDVEEALEKAKKWPAEKRLLGGERGGLKIEGFDLGNSPLEY 89 (240)
T ss_pred CCCEEEEcCCHHHHHHHHhhcCCCCeEEEeccCCccCCCCCCCCCHHHH
Confidence 7888887532122333444443 367888743 6688888755
No 158
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=20.42 E-value=3.4e+02 Score=19.57 Aligned_cols=17 Identities=18% Similarity=0.442 Sum_probs=7.9
Q ss_pred HHHHHHcCCeEEEEEec
Q psy11152 26 LRQAKELGNYLVVGVHT 42 (112)
Q Consensus 26 l~~a~~~~~~lvv~v~~ 42 (112)
++++++.+|-+||..+.
T Consensus 166 i~~lr~~~D~vIv~~H~ 182 (239)
T smart00854 166 IARARKKADVVIVSLHW 182 (239)
T ss_pred HHHHhccCCEEEEEecC
Confidence 33444444545555544
No 159
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=20.38 E-value=3.1e+02 Score=20.89 Aligned_cols=54 Identities=19% Similarity=0.151 Sum_probs=28.5
Q ss_pred CCcCHHHHHHHHhhcc-CCCE---EEEcCCCCCHHH------HHHhcCCCEEEEcCCCCCCccc
Q psy11152 53 PVFTQQERYKMVRGIK-WVDE---VVEGAPYVTTLE------TLDAYDCDFCVHGALEVLVSLE 106 (112)
Q Consensus 53 ~i~s~~eR~~~l~~~~-~vd~---vi~~~~~~~~~~------fi~~l~~~~iv~G~D~~f~~~~ 106 (112)
+.+|.+||.++++... -++. ||...-..++++ ..+++++|.+.+-.-|-+...+
T Consensus 52 ~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY~k~~~ 115 (299)
T COG0329 52 PTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYYNKPSQ 115 (299)
T ss_pred hhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCCh
Confidence 5677888888776541 1221 444211122222 2356788877776655554443
No 160
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=20.02 E-value=2.8e+02 Score=20.79 Aligned_cols=85 Identities=13% Similarity=0.174 Sum_probs=46.6
Q ss_pred ceEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCccc---ccCCC-C---CCcCHHHHHHHHhhccCCCEEEEcCC
Q psy11152 6 LLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEI---SKHKG-P---PVFTQQERYKMVRGIKWVDEVVEGAP 78 (112)
Q Consensus 6 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~---~~~k~-~---~i~s~~eR~~~l~~~~~vd~vi~~~~ 78 (112)
|++.++.||=| |. .+.++..+.+..+++.+.++... ....+ + -.++.++=.+.+++. +++.||--+.
T Consensus 1 m~ILvlGGT~e----gr-~la~~L~~~g~~v~~s~~t~~~~~~~~~~g~~~v~~g~l~~~~l~~~l~~~-~i~~VIDAtH 74 (256)
T TIGR00715 1 MTVLLMGGTVD----SR-AIAKGLIAQGIEILVTVTTSEGKHLYPIHQALTVHTGALDPQELREFLKRH-SIDILVDATH 74 (256)
T ss_pred CeEEEEechHH----HH-HHHHHHHhCCCeEEEEEccCCccccccccCCceEEECCCCHHHHHHHHHhc-CCCEEEEcCC
Confidence 35778888777 43 56667766676677776665421 11111 1 135555533566666 6988885221
Q ss_pred -C---C--CHHHHHHhcCCCEEEE
Q psy11152 79 -Y---V--TTLETLDAYDCDFCVH 96 (112)
Q Consensus 79 -~---~--~~~~fi~~l~~~~iv~ 96 (112)
+ . ...+-.+++++.|+=.
T Consensus 75 PfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 75 PFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEE
Confidence 1 1 1222235677776654
Done!