Query psy11152
Match_columns 112
No_of_seqs 121 out of 1083
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 19:20:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11152.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11152hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3elb_A Ethanolamine-phosphate 100.0 3.6E-29 1.2E-33 192.7 11.7 104 1-104 2-105 (341)
2 3hl4_A Choline-phosphate cytid 99.9 2E-25 6.8E-30 164.2 11.0 101 4-104 74-176 (236)
3 3glv_A Lipopolysaccharide core 99.9 2.2E-25 7.7E-30 152.5 10.3 98 6-104 2-99 (143)
4 3elb_A Ethanolamine-phosphate 99.9 2.2E-23 7.6E-28 160.5 10.9 103 4-106 196-302 (341)
5 2b7l_A Glycerol-3-phosphate cy 99.9 4.6E-23 1.6E-27 138.5 11.1 96 6-102 1-97 (132)
6 1coz_A Protein (glycerol-3-pho 99.9 4.1E-23 1.4E-27 138.1 10.6 95 6-101 1-96 (129)
7 3op1_A Macrolide-efflux protei 99.9 2.5E-23 8.7E-28 158.3 9.5 98 6-104 20-136 (308)
8 2x0k_A Riboflavin biosynthesis 99.9 6.7E-22 2.3E-26 152.1 9.7 99 6-105 15-131 (338)
9 1mrz_A Riboflavin kinase/FMN a 99.9 9E-22 3.1E-26 148.9 8.3 95 8-104 1-106 (293)
10 3k9w_A Phosphopantetheine aden 99.8 5.5E-21 1.9E-25 136.5 8.9 92 6-104 22-120 (187)
11 3nv7_A Phosphopantetheine aden 99.8 1.2E-20 4E-25 131.5 6.8 92 6-104 2-100 (157)
12 1qjc_A Phosphopantetheine aden 99.8 3.3E-19 1.1E-23 122.2 11.7 91 6-103 1-94 (158)
13 1o6b_A Phosphopantetheine aden 99.8 1.3E-18 4.5E-23 121.0 11.0 90 7-103 3-95 (169)
14 4f3r_A Phosphopantetheine aden 99.8 3.7E-19 1.3E-23 124.4 8.0 91 6-103 5-101 (162)
15 3nbk_A Phosphopantetheine aden 99.8 6.6E-18 2.3E-22 119.7 10.6 93 5-102 20-117 (177)
16 3f3m_A Phosphopantetheine aden 99.7 9.3E-18 3.2E-22 117.9 9.8 90 6-102 3-99 (168)
17 3nd5_A Phosphopantetheine aden 99.7 1.9E-17 6.6E-22 116.6 10.1 87 6-97 2-90 (171)
18 1od6_A PPAT, phosphopantethein 99.7 2.8E-17 9.6E-22 112.9 10.6 85 9-99 3-91 (160)
19 2qtr_A Nicotinate (nicotinamid 99.7 6.4E-18 2.2E-22 119.0 4.5 95 7-104 3-113 (189)
20 1vlh_A Phosphopantetheine aden 99.7 2.2E-16 7.5E-21 110.8 10.7 84 7-97 13-99 (173)
21 3gmi_A UPF0348 protein MJ0951; 99.7 1.6E-16 5.5E-21 122.9 10.8 89 5-98 51-151 (357)
22 1kam_A Deamido-NAD(+), nicotin 99.7 1.3E-16 4.6E-21 113.1 9.1 94 7-103 8-117 (194)
23 1k4m_A NAMN adenylyltransferas 99.6 3.5E-16 1.2E-20 112.5 7.6 90 8-100 4-110 (213)
24 1yum_A 'probable nicotinate-nu 99.6 3.8E-15 1.3E-19 109.6 9.1 93 4-99 21-129 (242)
25 2ejc_A Pantoate--beta-alanine 99.6 1.6E-16 5.4E-21 119.5 0.7 78 7-85 22-103 (280)
26 1ej2_A Nicotinamide mononucleo 99.6 7.9E-15 2.7E-19 103.1 7.4 91 7-100 4-107 (181)
27 2qjo_A Bifunctional NMN adenyl 99.5 5.9E-14 2E-18 105.6 7.9 94 6-102 7-117 (341)
28 3do8_A Phosphopantetheine aden 99.5 1.2E-13 4.1E-18 95.0 7.5 59 8-67 2-61 (148)
29 2h29_A Probable nicotinate-nuc 99.4 1.7E-13 5.7E-18 96.7 4.8 91 7-100 3-109 (189)
30 1f9a_A Hypothetical protein MJ 99.4 1.5E-12 5.3E-17 90.4 7.6 89 8-99 2-100 (168)
31 1nup_A FKSG76; NAD biosynthesi 99.3 2.3E-12 7.8E-17 95.0 5.7 75 1-75 1-80 (252)
32 2qjt_B Nicotinamide-nucleotide 99.3 3.8E-12 1.3E-16 96.3 6.9 60 6-67 7-66 (352)
33 1v8f_A Pantoate-beta-alanine l 99.3 1.7E-13 5.8E-18 102.8 -0.6 87 7-98 20-115 (276)
34 3ag6_A Pantothenate synthetase 99.3 4.1E-13 1.4E-17 101.0 1.3 93 9-105 28-150 (283)
35 1lw7_A Transcriptional regulat 99.3 5.5E-12 1.9E-16 96.4 7.6 67 6-72 2-74 (365)
36 1kqn_A Nmnat, nicotinamide mon 99.3 5.9E-12 2E-16 94.3 6.4 68 6-75 8-82 (279)
37 3h05_A Uncharacterized protein 99.1 9.3E-11 3.2E-15 82.6 5.6 55 7-66 3-57 (177)
38 3cov_A Pantothenate synthetase 99.1 1.6E-11 5.4E-16 93.1 0.9 91 7-98 33-131 (301)
39 3uk2_A Pantothenate synthetase 98.7 7.3E-08 2.5E-12 72.4 8.0 67 8-75 23-92 (283)
40 3inn_A Pantothenate synthetase 98.4 1.9E-06 6.4E-11 65.5 9.4 66 6-75 43-113 (314)
41 1jhd_A Sulfate adenylyltransfe 98.3 2.4E-06 8.2E-11 66.8 8.9 90 7-101 193-299 (396)
42 1v47_A ATP sulfurylase; produc 98.3 2.8E-06 9.7E-11 65.4 8.6 90 7-101 156-260 (349)
43 3q12_A Pantoate--beta-alanine 98.0 9.2E-06 3.1E-10 61.1 6.3 66 6-75 25-95 (287)
44 3mxt_A Pantothenate synthetase 97.9 6.1E-05 2.1E-09 56.6 8.8 60 11-75 32-94 (285)
45 3n8h_A Pantothenate synthetase 97.5 0.00023 7.9E-09 52.8 6.8 62 13-75 30-94 (264)
46 2gks_A Bifunctional SAT/APS ki 96.8 0.015 5.1E-07 46.8 11.1 92 7-103 164-271 (546)
47 1m8p_A Sulfate adenylyltransfe 96.0 0.048 1.6E-06 44.1 9.4 92 7-103 191-297 (573)
48 1r6x_A ATP:sulfate adenylyltra 95.9 0.099 3.4E-06 40.7 10.7 92 7-103 188-294 (395)
49 1g8f_A Sulfate adenylyltransfe 95.7 0.095 3.3E-06 42.0 10.1 91 7-102 189-294 (511)
50 3cr8_A Sulfate adenylyltranfer 92.8 0.64 2.2E-05 37.4 8.9 91 7-102 164-269 (552)
51 1x6v_B Bifunctional 3'-phospho 92.5 0.74 2.5E-05 37.8 9.0 95 7-104 413-528 (630)
52 3vot_A L-amino acid ligase, BL 51.8 60 0.0021 24.2 7.3 33 1-38 1-33 (425)
53 1ex2_A Protein MAF; structural 38.3 37 0.0013 23.4 3.9 41 58-100 12-71 (189)
54 2cya_A Tyrosyl-tRNA synthetase 29.2 70 0.0024 24.1 4.4 33 9-42 37-75 (364)
55 2l4c_A Endoplasmic reticulum r 28.4 65 0.0022 20.2 3.6 39 8-46 40-78 (124)
56 3ih5_A Electron transfer flavo 27.6 1.5E+02 0.0052 20.4 6.1 69 18-100 17-101 (217)
57 2zp1_A Tyrosyl-tRNA synthetase 25.0 63 0.0022 23.8 3.4 28 15-42 35-68 (314)
58 2csx_A Methionyl-tRNA syntheta 24.7 50 0.0017 25.5 2.9 9 16-24 18-26 (497)
59 1efv_A Electron transfer flavo 24.7 2.1E+02 0.0071 21.0 7.6 71 18-100 15-96 (315)
60 2yvk_A Methylthioribose-1-phos 24.3 2.3E+02 0.008 21.4 7.7 66 23-101 195-263 (374)
61 1t5o_A EIF2BD, translation ini 23.0 2.4E+02 0.0083 21.1 8.5 67 23-102 168-237 (351)
62 2a0u_A Initiation factor 2B; S 22.2 2.6E+02 0.009 21.2 9.1 67 23-102 199-268 (383)
63 1qo2_A Molecule: N-((5-phospho 21.9 1.9E+02 0.0066 19.6 5.5 60 15-75 96-163 (241)
64 2qlc_A DNA repair protein RADC 21.9 92 0.0031 19.9 3.3 37 9-45 43-79 (126)
65 1t9k_A Probable methylthioribo 21.3 2.6E+02 0.009 20.9 8.6 66 23-101 170-238 (347)
No 1
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}
Probab=99.96 E-value=3.6e-29 Score=192.74 Aligned_cols=104 Identities=66% Similarity=1.115 Sum_probs=95.5
Q ss_pred CCCCCceEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhccCCCEEEEcCCCC
Q psy11152 1 METLNLLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVVEGAPYV 80 (112)
Q Consensus 1 ~~~~~~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~~~vd~vi~~~~~~ 80 (112)
|+..+|++|++.|+||++|.||+.+|++|++++++++|++++|+...+.|++|++|.+||+++++++++||+|++|++|.
T Consensus 2 m~~~~~~~v~~~G~FD~lH~GH~~lL~~A~~l~d~LiVgV~~d~~v~~~K~~pi~s~eER~~~l~~l~~VD~Vv~f~~~~ 81 (341)
T 3elb_A 2 MGGRRAVRVWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEIAKHKGPPVFTQEERYKMVQAIKWVDEVVPAAPYV 81 (341)
T ss_dssp --CCCCCEEEEEECCCSCCHHHHHHHHHHHHTSSEEEEEECCHHHHHHHSSCCSSCHHHHHHHHHHBTTCCEEEETCCSS
T ss_pred CCCCCceEEEEEeeCCCCCHHHHHHHHHHHHhCCcCEEEeecCHHHhccCCCCCCCHHHHHHHHHHcCCCCEEEecCCCC
Confidence 88999999999999999999999999999999999999999998765446569999999999999999999999998888
Q ss_pred CHHHHHHhcCCCEEEEcCCCCCCc
Q psy11152 81 TTLETLDAYDCDFCVHGALEVLVS 104 (112)
Q Consensus 81 ~~~~fi~~l~~~~iv~G~D~~f~~ 104 (112)
++++|+++++++++|+|+||+||.
T Consensus 82 ~~~efi~~~~~d~vV~G~D~~~g~ 105 (341)
T 3elb_A 82 TTLETLDKYNCDFCVHGNDITLTV 105 (341)
T ss_dssp CCHHHHHHTTCSEEEECSCCCBCT
T ss_pred CHHHHHHHhCCCEEEECCCCCCCC
Confidence 899999999999999999999984
No 2
>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus}
Probab=99.93 E-value=2e-25 Score=164.21 Aligned_cols=101 Identities=37% Similarity=0.519 Sum_probs=89.9
Q ss_pred CCceEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEecCcccccCCCCCCcCHHHHHHHHhhccCCCEEEEcCCCCC
Q psy11152 4 LNLLATSLQSNYDMVHFGHANNLRQAKELG--NYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVVEGAPYVT 81 (112)
Q Consensus 4 ~~~~~v~~~G~FD~~H~GH~~ll~~a~~~~--~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~~~vd~vi~~~~~~~ 81 (112)
..+.+|++.|+||+||.||+.+|++|++++ ++|+|++++|+...+.|+.|++|.+||++++++|++||.|++..++..
T Consensus 74 ~~~~~V~~~GtFD~~H~GHl~iL~rAk~lf~gD~LIVgV~~D~~v~~~Kg~pi~s~eER~e~v~~~k~VD~Vvv~~p~~l 153 (236)
T 3hl4_A 74 ERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAVQHCRYVDEVVRNAPWTL 153 (236)
T ss_dssp TSCEEEEEEECCTTCCHHHHHHHHHHHTSSSSEEEEEEECCHHHHHHHTCCCSSCHHHHHHHHHTBTTCSEEESSCCSSC
T ss_pred CCCeEEEEeccCCCCCHHHHHHHHHHHHhcCCCeEEEEEcccHHHhhcCCCCCCCHHHHHHHHHHhCCCCeEEECCcCcC
Confidence 345689999999999999999999999995 789999999987655566689999999999999999999998777766
Q ss_pred HHHHHHhcCCCEEEEcCCCCCCc
Q psy11152 82 TLETLDAYDCDFCVHGALEVLVS 104 (112)
Q Consensus 82 ~~~fi~~l~~~~iv~G~D~~f~~ 104 (112)
..+|++++++++|++|+|+.++.
T Consensus 154 ~~d~i~~~~~d~Vv~GDd~~~~~ 176 (236)
T 3hl4_A 154 TPEFLAEHRIDFVAHDDIPYSSA 176 (236)
T ss_dssp CHHHHHHTTCCEEEEESSCCCCS
T ss_pred cHHHHHHcCCCEEEECCccccCC
Confidence 78999999999999999987764
No 3
>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1}
Probab=99.93 E-value=2.2e-25 Score=152.49 Aligned_cols=98 Identities=23% Similarity=0.392 Sum_probs=83.5
Q ss_pred ceEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhccCCCEEEEcCCCCCHHHH
Q psy11152 6 LLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVVEGAPYVTTLET 85 (112)
Q Consensus 6 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~~~vd~vi~~~~~~~~~~f 85 (112)
|++++++|+|||+|.||+.+|++|++.++.++|++++++...+.+..+++|.+||+++++++++||.+++.+++ ...++
T Consensus 2 m~~v~~~G~FD~vH~GH~~li~~a~~~~~~~~v~v~~~~~~~~~~~~~l~~~~eR~~~l~~~~~vd~v~~~~~~-~f~~~ 80 (143)
T 3glv_A 2 MIRVMATGVFDILHLGHIHYLKESKKLGDELVVVVARDSTARNNGKIPIFDENSRLALISELKVVDRAILGHEG-DMMKT 80 (143)
T ss_dssp CCEEEEEECCSSCCHHHHHHHHHHHTTSSEEEEEECCHHHHHHTTCCCSSCHHHHHHHHTTBTTCSEEEECCTT-CHHHH
T ss_pred ceEEEEEeecCCCCHHHHHHHHHHHHhCCCcEEEEECCcchhhcCCCCCCCHHHHHHHHHhcCCCCEEEEcCch-hHHHH
Confidence 67899999999999999999999999999988889887754322224899999999999999669999987654 35567
Q ss_pred HHhcCCCEEEEcCCCCCCc
Q psy11152 86 LDAYDCDFCVHGALEVLVS 104 (112)
Q Consensus 86 i~~l~~~~iv~G~D~~f~~ 104 (112)
+++++++++|+|+||+|+.
T Consensus 81 ~~~l~~~~iv~G~d~~f~~ 99 (143)
T 3glv_A 81 VIEVKPDIITLGYDQKFDE 99 (143)
T ss_dssp HHHHCCSEEEECTTCHHHH
T ss_pred HHhcCCCEEEECCCCCCCH
Confidence 8899999999999999963
No 4
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}
Probab=99.90 E-value=2.2e-23 Score=160.51 Aligned_cols=103 Identities=31% Similarity=0.584 Sum_probs=91.6
Q ss_pred CCceEEEEecccCcCCHHHHHHHHHHHHcCC--eEEEEEecCcccccCCC--CCCcCHHHHHHHHhhccCCCEEEEcCCC
Q psy11152 4 LNLLATSLQSNYDMVHFGHANNLRQAKELGN--YLVVGVHTDEEISKHKG--PPVFTQQERYKMVRGIKWVDEVVEGAPY 79 (112)
Q Consensus 4 ~~~~~v~~~G~FD~~H~GH~~ll~~a~~~~~--~lvv~v~~d~~~~~~k~--~~i~s~~eR~~~l~~~~~vd~vi~~~~~ 79 (112)
++.++|++.|+||+||.||+.+|++|+++++ +|+||+++|+.+++.|+ .|++|.+||.+++++|++||+|++..++
T Consensus 196 ~~~~iv~~~GsFD~~h~GHl~~L~rA~~l~D~~~LiVgV~~d~~v~~~Kg~~~pi~~~~ER~~~v~~~~~vd~V~v~~~~ 275 (341)
T 3elb_A 196 PGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHFDQEVNHYKGKNYPIMNLHERTLSVLACRYVSEVVIGAPY 275 (341)
T ss_dssp TTCEEEEEEECCTTCCHHHHHHHHHHHTTSSSEEEEEEEECHHHHHHHHCTTCCSSCHHHHHHHHHTBTTCCEEEEEECS
T ss_pred CCCEEEEEecccCCCCHHHHHHHHHHHHhCCCCEEEEEEccCHhhHhhcCCCCCCCCHHHHHHHHHHcCCCCCEEECCCC
Confidence 3457899999999999999999999999999 99999999987765554 4899999999999999999999996666
Q ss_pred CCHHHHHHhcCCCEEEEcCCCCCCccc
Q psy11152 80 VTTLETLDAYDCDFCVHGALEVLVSLE 106 (112)
Q Consensus 80 ~~~~~fi~~l~~~~iv~G~D~~f~~~~ 106 (112)
....+|+++++++++|+|.||.....+
T Consensus 276 ~l~~~~~~~~~~~~iv~G~d~~~~~~~ 302 (341)
T 3elb_A 276 AVTAELLSHFKVDLVCHGKTEIIPDRD 302 (341)
T ss_dssp SCCHHHHHHTTCSEEEECSSCCCCCTT
T ss_pred cchHHHHHhcCCcEEEECCCCccccCC
Confidence 667899999999999999999876554
No 5
>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus}
Probab=99.90 E-value=4.6e-23 Score=138.46 Aligned_cols=96 Identities=30% Similarity=0.503 Sum_probs=78.0
Q ss_pred ceEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCccc-ccCCCCCCcCHHHHHHHHhhccCCCEEEEcCCCCCHHH
Q psy11152 6 LLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEI-SKHKGPPVFTQQERYKMVRGIKWVDEVVEGAPYVTTLE 84 (112)
Q Consensus 6 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~-~~~k~~~i~s~~eR~~~l~~~~~vd~vi~~~~~~~~~~ 84 (112)
|++++++|+|||+|.||+.++++|++.++.+++++++++.. .+.+ .+++|.+||++++++++++|.+++...+....+
T Consensus 1 m~~~~~~G~FDp~H~GH~~li~~a~~~~~~~~v~v~~~~~~~~~~~-~~l~~~~eR~~~l~~~~~~d~v~~~~~~~~~~~ 79 (132)
T 2b7l_A 1 MKRVITYGTYDLLHYGHIELLRRAREMGDYLIVALSTDEFNQIKHK-KSYYDYEQRKMMLESIRYVDLVIPEKGWGQKED 79 (132)
T ss_dssp CCEEEEEECCCSCCHHHHHHHHHHHHTSSEEEEEEECHHHHHHTTC-CCSSCHHHHHHHHHTBTTCCEEEEECCGGGHHH
T ss_pred CeEEEEeeecCcCCHHHHHHHHHHHHhCCcEEEEEECCHHHhccCC-CCCCCHHHHHHHHHhcCCCCEEEECCChHHHHH
Confidence 35899999999999999999999999999988999988743 1222 479999999999999966999887433222334
Q ss_pred HHHhcCCCEEEEcCCCCC
Q psy11152 85 TLDAYDCDFCVHGALEVL 102 (112)
Q Consensus 85 fi~~l~~~~iv~G~D~~f 102 (112)
.+++++++++++|+||..
T Consensus 80 ~~~~~~~~~iv~G~D~~~ 97 (132)
T 2b7l_A 80 DVEKFDVDVFVMGHDWEG 97 (132)
T ss_dssp HHHHTTCCEEEECGGGTT
T ss_pred HHHHcCCCEEEECCCCcC
Confidence 467899999999999953
No 6
>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A*
Probab=99.89 E-value=4.1e-23 Score=138.11 Aligned_cols=95 Identities=28% Similarity=0.431 Sum_probs=78.7
Q ss_pred ceEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCccc-ccCCCCCCcCHHHHHHHHhhccCCCEEEEcCCCCCHHH
Q psy11152 6 LLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEI-SKHKGPPVFTQQERYKMVRGIKWVDEVVEGAPYVTTLE 84 (112)
Q Consensus 6 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~-~~~k~~~i~s~~eR~~~l~~~~~vd~vi~~~~~~~~~~ 84 (112)
|++++++|+|||+|.||+.++++|++.++++++++++++.. .+.+ .+++|.+||++++++++++|.++...++....+
T Consensus 1 m~~~~~~G~FDp~H~GH~~li~~a~~~~d~~~v~v~~~~~~~~~~~-~~l~~~~eR~~~l~~~~~~d~v~~~~~~~~~~~ 79 (129)
T 1coz_A 1 MKKVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQK-KAYHSYEHRKLILETIRYVDEVIPEKNWEQKKQ 79 (129)
T ss_dssp CCEEEEEECCCSCCHHHHHHHHHHHTTSSEEEEEEECHHHHHHHTC-CCSSCHHHHHHHHTTBTTCCEEEEECCSTTHHH
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHhcCCC-CCCCCHHHHHHHHHhcCCCCEEEeCCCHHHHHH
Confidence 35899999999999999999999999999999999987732 1222 479999999999999966999887444444445
Q ss_pred HHHhcCCCEEEEcCCCC
Q psy11152 85 TLDAYDCDFCVHGALEV 101 (112)
Q Consensus 85 fi~~l~~~~iv~G~D~~ 101 (112)
.+++++++++++|+||.
T Consensus 80 ~l~~~~~~~iv~G~D~~ 96 (129)
T 1coz_A 80 DIIDHNIDVFVMGDDWE 96 (129)
T ss_dssp HHHHTTCSEEEEEGGGT
T ss_pred HHHHhCCcEEEECCCCC
Confidence 57889999999999996
No 7
>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}
Probab=99.89 E-value=2.5e-23 Score=158.34 Aligned_cols=98 Identities=17% Similarity=0.163 Sum_probs=79.5
Q ss_pred ceEEEEecccCcCCHHHHHHHHHHHHcCCe-----EEEEEecCcc--ccc--CCCC-CCcCHHHHHHHHhhccCCCEEEE
Q psy11152 6 LLATSLQSNYDMVHFGHANNLRQAKELGNY-----LVVGVHTDEE--ISK--HKGP-PVFTQQERYKMVRGIKWVDEVVE 75 (112)
Q Consensus 6 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~-----lvv~v~~d~~--~~~--~k~~-~i~s~~eR~~~l~~~~~vd~vi~ 75 (112)
.++|+++|+|||+|+|||++|++|++.|+. +++++.+.|. +.+ .+.+ +++|.+||.++++++ |||.+++
T Consensus 20 ~~~vvtiG~FDGvH~GHq~li~~a~~~a~~~~~~~vV~TFdphP~~v~~~~~~~~~~~Lt~~~eK~~ll~~l-GVD~v~~ 98 (308)
T 3op1_A 20 SDSVVVLGYFDGIHKGHQELFRVANKAARKDLLPIVVMTFNESPKIALEPYHPDLFLHILNPAERERKLKRE-GVEELYL 98 (308)
T ss_dssp SCEEEEESCCSSCCHHHHHHHHHHHHHSSTTCCCEEEEEESSCTHHHHSCCCGGGGCBSSCHHHHHHHHHHH-TCCEEEE
T ss_pred CCeEEEEecCCcccHHHHHHHHHHHHHHHhcCCceEEEEecCCHHHHhCccccCCcccCCCHHHHHHHHHHc-CCCEEEE
Confidence 478999999999999999999999999854 3445555553 222 1223 799999999999999 7999886
Q ss_pred --cCCC---CCHHHHHH----hcCCCEEEEcCCCCCCc
Q psy11152 76 --GAPY---VTTLETLD----AYDCDFCVHGALEVLVS 104 (112)
Q Consensus 76 --~~~~---~~~~~fi~----~l~~~~iv~G~D~~f~~ 104 (112)
|+++ +++++|++ +++++.+|+|+||+||.
T Consensus 99 ~~F~~~~a~ls~e~Fv~~ll~~l~~~~ivvG~DfrFG~ 136 (308)
T 3op1_A 99 LDFSSQFASLTAQEFFATYIKAMNAKIIVAGFDYTFGS 136 (308)
T ss_dssp ECCCHHHHTCCHHHHHHHHHHHHTEEEEEEETTCCBTT
T ss_pred ecCCHHHHcCCHHHHHHHHHHHcCCCEEEECcCCCCCC
Confidence 7653 78999974 68999999999999998
No 8
>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-BIND multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes}
Probab=99.86 E-value=6.7e-22 Score=152.09 Aligned_cols=99 Identities=16% Similarity=0.112 Sum_probs=79.2
Q ss_pred ceEEEEecccCcCCHHHHHHHHHHHHcCCe---EEEEEecCcc----cccCCC-CCCcCHHHHHHHHhhccCCCEEEE--
Q psy11152 6 LLATSLQSNYDMVHFGHANNLRQAKELGNY---LVVGVHTDEE----ISKHKG-PPVFTQQERYKMVRGIKWVDEVVE-- 75 (112)
Q Consensus 6 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~---lvv~v~~d~~----~~~~k~-~~i~s~~eR~~~l~~~~~vd~vi~-- 75 (112)
.++|+++|+|||+|+||++||++|++.|+. .+++++.+|. ..+.+. .+++|.++|+++++++ +||.+++
T Consensus 15 ~~~vvtiG~FDGvH~GHq~Li~~a~~~a~~~~~~~vvvtFdphP~~v~~~~~~~~~L~~~~eR~~ll~~~-gVD~v~v~~ 93 (338)
T 2x0k_A 15 DNSAVTIGVFDGVHRGHQKLINATVEKAREVGAKAIMVTFDPHPVSVFLPRRAPLGITTLAERFALAESF-GIDGVLVID 93 (338)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHHHTCEEEEEEESSCHHHHHSTTCSCCBSSCHHHHHHHHHHT-TCSEEEEEC
T ss_pred CCeEEEEEeCCcccHHHHHHHHHHHHHHHHcCCcEEEEEecCCHHHHcCCccCCCCCCCHHHHHHHHHhc-CCCEEEEcc
Confidence 468999999999999999999999998753 3455555542 222232 3699999999999999 7999876
Q ss_pred cCCC---CCHHHHHHh-----cCCCEEEEcCCCCCCcc
Q psy11152 76 GAPY---VTTLETLDA-----YDCDFCVHGALEVLVSL 105 (112)
Q Consensus 76 ~~~~---~~~~~fi~~-----l~~~~iv~G~D~~f~~~ 105 (112)
|+.+ +++++|++. ++++++|+|+||+||..
T Consensus 94 F~~~~a~ls~e~Fi~~il~~~l~~~~ivvG~Df~FG~~ 131 (338)
T 2x0k_A 94 FTRELSGTSPEKYVEFLLEDTLHASHVVVGANFTFGEN 131 (338)
T ss_dssp TTTSSSSCCHHHHHHHCCCCCTCEEEEEEETTCEESGG
T ss_pred ccHHHHhCCHHHHHHHHHHhhcCCCEEEEeecCCCCCC
Confidence 6644 789999864 78999999999999963
No 9
>1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin binding domain, 6-stranded beta barrel nucleotide binding domain; HET: CIT; 1.90A {Thermotoga maritima} SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A* 1t6z_A* 2i1l_A
Probab=99.86 E-value=9e-22 Score=148.90 Aligned_cols=95 Identities=19% Similarity=0.143 Sum_probs=75.1
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCe-----EEEEEecCccc-ccCCCCCCcCHHHHHHHHhhccCCCEEEEcCCC--
Q psy11152 8 ATSLQSNYDMVHFGHANNLRQAKELGNY-----LVVGVHTDEEI-SKHKGPPVFTQQERYKMVRGIKWVDEVVEGAPY-- 79 (112)
Q Consensus 8 ~v~~~G~FD~~H~GH~~ll~~a~~~~~~-----lvv~v~~d~~~-~~~k~~~i~s~~eR~~~l~~~~~vd~vi~~~~~-- 79 (112)
+|+++|+|||+|.||+++|++|++.|+. +++++.++|.. .+.+..+++|.++|++++++++ +..++.| .+
T Consensus 1 ~vvtiG~FDgvH~GH~~ll~~a~~~a~~~~~~~vVvtFdphP~~l~~~~~~~l~~~~eR~~ll~~lg-~~~v~~F-~~~a 78 (293)
T 1mrz_A 1 MVVSIGVFDGVHIGHQKVLRTMKEIAFFRKDDSLIYTISYPPEYFLPDFPGLLMTVESRVEMLSRYA-RTVVLDF-FRIK 78 (293)
T ss_dssp -CEEEECCTTCCHHHHHHHHHHHHHHHHHTCCCEEEEESSCGGGGSTTCCCBSSCHHHHHHHHTTTS-CEEEECH-HHHT
T ss_pred CEEEEeeCccccHHHHHHHHHHHHHHHHcCCeEEEEEecCCHHHhCCCCCCCCCCHHHHHHHHHhCC-CEEEEEh-HHhh
Confidence 4789999999999999999999998754 45555555522 2222237999999999999995 5555557 22
Q ss_pred -CCHHHHHHh--cCCCEEEEcCCCCCCc
Q psy11152 80 -VTTLETLDA--YDCDFCVHGALEVLVS 104 (112)
Q Consensus 80 -~~~~~fi~~--l~~~~iv~G~D~~f~~ 104 (112)
+++++|++. ++++++|+|+||+||.
T Consensus 79 ~ls~~~Fi~~ill~~~~iVvG~Df~fG~ 106 (293)
T 1mrz_A 79 DLTPEGFVERYLSGVSAVVVGRDFRFGK 106 (293)
T ss_dssp TCCHHHHHHHHCTTCCEEEEETTCCBSG
T ss_pred cCCHHHHHHHHhcCCCEEEECCCCCCCC
Confidence 789999988 9999999999999985
No 10
>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, coenzyme A, COA; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei} PDB: 3ikz_A* 3pxu_A*
Probab=99.84 E-value=5.5e-21 Score=136.51 Aligned_cols=92 Identities=23% Similarity=0.276 Sum_probs=79.9
Q ss_pred ceEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhh-ccCCCEEEE--cCCCCCH
Q psy11152 6 LLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRG-IKWVDEVVE--GAPYVTT 82 (112)
Q Consensus 6 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~-~~~vd~vi~--~~~~~~~ 82 (112)
|++++++|+|||+|.||+.++++|++.++++++++..++. | .+++|.+||++++++ ++++|.+.+ |+ ...
T Consensus 22 mki~v~~GsFDpiH~GHl~li~~A~~~~d~viv~v~~~p~----K-~~l~s~eeR~~ml~~~~~~v~~v~v~~f~--~~~ 94 (187)
T 3k9w_A 22 MVVAVYPGTFDPLTRGHEDLVRRASSIFDTLVVGVADSRA----K-KPFFSLEERLKIANEVLGHYPNVKVMGFT--GLL 94 (187)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEEECCGG----G-CCSSCHHHHHHHHHHHHTTCTTEEEEEES--SCH
T ss_pred cEEEEEEEeCCcCcHHHHHHHHHHHHHCCcEEEEEecCCc----c-CCCCCHHHHHHHHHHHhccCCcEEEEech--hhH
Confidence 5789999999999999999999999999999999987652 2 379999999999998 578998776 54 356
Q ss_pred HHHHHhcCCCEEEEc----CCCCCCc
Q psy11152 83 LETLDAYDCDFCVHG----ALEVLVS 104 (112)
Q Consensus 83 ~~fi~~l~~~~iv~G----~D~~f~~ 104 (112)
.+++++++++++|+| .||.|+.
T Consensus 95 ~d~l~~l~~~~iv~G~r~~~Df~~E~ 120 (187)
T 3k9w_A 95 KDFVRANDARVIVRGLRAVSDFEYEF 120 (187)
T ss_dssp HHHHHHTTCSEEEEECCTTSCHHHHH
T ss_pred HHHHHHcCCCEEEECCCcccccchHH
Confidence 789999999999999 8988653
No 11
>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695 strain, mutant I4V/N76Y, phosphopa adenylyltransferase; 1.75A {Helicobacter pylori} PDB: 3otw_A*
Probab=99.82 E-value=1.2e-20 Score=131.50 Aligned_cols=92 Identities=24% Similarity=0.249 Sum_probs=79.0
Q ss_pred ceEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhh-ccCCCEEEE--cCCCCCH
Q psy11152 6 LLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRG-IKWVDEVVE--GAPYVTT 82 (112)
Q Consensus 6 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~-~~~vd~vi~--~~~~~~~ 82 (112)
|+++++.|+|||+|.||+.++++|++.+++++|++..++. | .+++|.+||.++++. +++++.+.+ ++ ..+
T Consensus 2 m~i~i~~GsFDPiH~GHl~ii~~A~~~~D~viv~v~~~~~----K-~~~~~~~eR~~ml~~a~~~~~~v~v~~~~--~l~ 74 (157)
T 3nv7_A 2 QKVGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSSA----K-NPMFSLDERLKMIQLATKSFKNVECVAFE--GLL 74 (157)
T ss_dssp -CEEEEEECCTTCCHHHHHHHHHHHTTSSEEEEEEECCGG----G-CCSSCHHHHHHHHHHHHTTSTTEEEEEEC--SCH
T ss_pred CEEEEEEEEcCCCCHHHHHHHHHHHHhCCceEEEEccCCC----C-CCCCCHHHHHHHHHHHhcCCCcEEEEecC--chH
Confidence 4689999999999999999999999999999999987762 3 378999999999987 677888665 54 368
Q ss_pred HHHHHhcCCCEEEEc----CCCCCCc
Q psy11152 83 LETLDAYDCDFCVHG----ALEVLVS 104 (112)
Q Consensus 83 ~~fi~~l~~~~iv~G----~D~~f~~ 104 (112)
.++++++++++++.| .||.|..
T Consensus 75 ~~~~~~~~~~~ivrG~r~~~D~~ye~ 100 (157)
T 3nv7_A 75 AYLAKEYHCKVLVRGLRVVSDFEYEL 100 (157)
T ss_dssp HHHHHHTTCCCBCCCCSCCCCHHHHH
T ss_pred HHHHHHcCCCEEEECCcccchhhhhH
Confidence 899999999999999 9987654
No 12
>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A
Probab=99.81 E-value=3.3e-19 Score=122.25 Aligned_cols=91 Identities=14% Similarity=0.199 Sum_probs=76.2
Q ss_pred ceEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhh-ccCCCEEEE--cCCCCCH
Q psy11152 6 LLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRG-IKWVDEVVE--GAPYVTT 82 (112)
Q Consensus 6 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~-~~~vd~vi~--~~~~~~~ 82 (112)
+++++++|+|||+|.||+.++++|++.++++++.++.+|. | .+++|.++|+++++. +.++|.+.+ ++. ..
T Consensus 1 ~~i~i~~GsFDpvH~GH~~l~~~a~~~~d~v~v~~~~~p~----k-~~~~~~~~R~~ml~~a~~~~~~v~v~~~~~--~~ 73 (158)
T 1qjc_A 1 QKRAIYPGTFDPITNGHIDIVTRATQMFDHVILAIAASPS----K-KPMFTLEERVALAQQATAHLGNVEVVGFSD--LM 73 (158)
T ss_dssp -CEEEEEECCTTCCHHHHHHHHHHHTTSSEEEEEEESCCS----S-CCSSCHHHHHHHHHHHTTTCTTEEEEEECS--CH
T ss_pred CCEEEEEecCCCCCHHHHHHHHHHHHhCCEEEEEECCCCC----C-CCCCCHHHHHHHHHHHHhcCCCeEEcccch--HH
Confidence 3589999999999999999999999999998888887652 3 368999999999996 668998765 542 35
Q ss_pred HHHHHhcCCCEEEEcCCCCCC
Q psy11152 83 LETLDAYDCDFCVHGALEVLV 103 (112)
Q Consensus 83 ~~fi~~l~~~~iv~G~D~~f~ 103 (112)
.+++++++++++++|.|+.++
T Consensus 74 ~~~l~~l~~~~~v~G~d~~~~ 94 (158)
T 1qjc_A 74 ANFARNQHATVLIRGLRAVAD 94 (158)
T ss_dssp HHHHHHTTCCEEEEECCTTCC
T ss_pred HHHHHHcCCCEEEEeccchhh
Confidence 678899999999999998765
No 13
>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3
Probab=99.78 E-value=1.3e-18 Score=120.96 Aligned_cols=90 Identities=17% Similarity=0.264 Sum_probs=74.7
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhh-ccCCCEEEE--cCCCCCHH
Q psy11152 7 LATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRG-IKWVDEVVE--GAPYVTTL 83 (112)
Q Consensus 7 ~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~-~~~vd~vi~--~~~~~~~~ 83 (112)
++++++|+|||+|.||+.++++|++.+++++|.+..+| .| .+++|.++|+++++. +.+++.+.+ ++ ....
T Consensus 3 ~i~i~~GsFDpvH~GH~~li~~a~~~~d~v~v~~~~~p----~k-~~l~~~~~R~~ml~~a~~~~~~v~v~~~e--~~~~ 75 (169)
T 1o6b_A 3 SIAVCPGSFDPVTYGHLDIIKRGAHIFEQVYVCVLNNS----SK-KPLFSVEERCELLREVTKDIPNITVETSQ--GLLI 75 (169)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEECCCC----SS-CCSSCHHHHHHHHHHHHTTCTTEEEEECS--SCHH
T ss_pred cEEEEEEeeCCCCHHHHHHHHHHHHhCCEEEEEECCCC----cc-CCCCCHHHHHHHHHHHHhcCCCEEEcccc--hHHH
Confidence 68999999999999999999999999998877766443 23 368999999999986 467887665 44 3466
Q ss_pred HHHHhcCCCEEEEcCCCCCC
Q psy11152 84 ETLDAYDCDFCVHGALEVLV 103 (112)
Q Consensus 84 ~fi~~l~~~~iv~G~D~~f~ 103 (112)
+.+++++++++++|.|+.++
T Consensus 76 ~~l~~l~~~~~i~G~d~~~~ 95 (169)
T 1o6b_A 76 DYARRKNAKAILRGLRAVSD 95 (169)
T ss_dssp HHHHHTTCSEEEEEECSGGG
T ss_pred HHHHHcCCCEEEEcCccccc
Confidence 77899999999999999876
No 14
>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltranferase; 2.25A {Coxiella burnetii}
Probab=99.78 E-value=3.7e-19 Score=124.41 Aligned_cols=91 Identities=15% Similarity=0.168 Sum_probs=73.0
Q ss_pred ceEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhccCCCEEEE--cCCCCCHH
Q psy11152 6 LLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVVE--GAPYVTTL 83 (112)
Q Consensus 6 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~~~vd~vi~--~~~~~~~~ 83 (112)
|+++++.|+|||+|.||+.++++|++.+++++|+++.++ .| .+++|.++|+++++.+...+.+.+ ++ ..+.
T Consensus 5 m~i~i~~GsFDPiH~GHl~li~~A~~~~d~viv~v~~~~----~K-~~~~~~~~R~~m~~~~~~~~~v~V~~~~--~l~~ 77 (162)
T 4f3r_A 5 KPIAIYPGTFDPLTNGHVDIIERALPLFNKIIVACAPTS----RK-DPHLKLEERVNLIADVLTDERVEVLPLT--GLLV 77 (162)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHGGGCSEEEEEECCC-----------CCHHHHHHHHHHHCCCTTEEEEECC--SCHH
T ss_pred eEEEEEEEEcCCCCHHHHHHHHHHHHHCCcEEEEEecCC----cc-CCCCCHHHHHHHHHHhhCCCCEEEEecc--chHH
Confidence 478999999999999999999999999999999999765 23 478999999999987533376554 54 3578
Q ss_pred HHHHhcCCCEEEEc----CCCCCC
Q psy11152 84 ETLDAYDCDFCVHG----ALEVLV 103 (112)
Q Consensus 84 ~fi~~l~~~~iv~G----~D~~f~ 103 (112)
++++++++++++.| .||.+.
T Consensus 78 ~~~~~~~~~~~v~G~r~~~Df~~e 101 (162)
T 4f3r_A 78 DFAKTHQANFILRGLRAVSDFDYE 101 (162)
T ss_dssp HHHHHTTCCEEEEEECSHHHHHHH
T ss_pred HHHHHcCCCEEEECCCchhhhhhH
Confidence 89999999999999 777654
No 15
>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A* 4e1a_A 3lcj_A 3rba_A* 1tfu_A* 3rff_A 3rhs_A* 3uc5_A*
Probab=99.75 E-value=6.6e-18 Score=119.67 Aligned_cols=93 Identities=16% Similarity=0.196 Sum_probs=77.8
Q ss_pred CceEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhh-ccCCCEEEEcCCCCCHH
Q psy11152 5 NLLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRG-IKWVDEVVEGAPYVTTL 83 (112)
Q Consensus 5 ~~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~-~~~vd~vi~~~~~~~~~ 83 (112)
.|+++++.|+|||+|.||+.++++|.+.+|+++|++..++ .| .+++|.++|+++++. ++..+.+.+.+-+....
T Consensus 20 ~mki~i~~GsFDPiH~GHl~ii~~A~~~~D~Viv~v~~np----~K-~~~~s~eeR~~mv~~a~~~~~~v~V~~~e~l~v 94 (177)
T 3nbk_A 20 HMTGAVCPGSFDPVTLGHVDIFERAAAQFDEVVVAILVNP----AK-TGMFDLDERIAMVKESTTHLPNLRVQVGHGLVV 94 (177)
T ss_dssp CCCEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEECCCT----TS-CCSSCHHHHHHHHHHHCTTCTTEEEEECCSCHH
T ss_pred CCEEEEEEEeeCCCCHHHHHHHHHHHHHCCEEEEEEcCCC----CC-CCCCCHHHHHHHHHHHhCCCCCEEEEecCchHH
Confidence 4689999999999999999999999999999999998765 23 368999999999985 66677766532224578
Q ss_pred HHHHhcCCCEEEEc----CCCCC
Q psy11152 84 ETLDAYDCDFCVHG----ALEVL 102 (112)
Q Consensus 84 ~fi~~l~~~~iv~G----~D~~f 102 (112)
+|++++++++++.| .||.+
T Consensus 95 d~~~~~~a~~ivrGlr~~~Dfey 117 (177)
T 3nbk_A 95 DFVRSCGMTAIVKGLRTGTDFEY 117 (177)
T ss_dssp HHHHHTTCCEEEEEECTTCCHHH
T ss_pred HHHHHcCCCEEEECCCchhHHHH
Confidence 99999999999999 88765
No 16
>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway, coenzyme A biosynthesis, nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus aureus} SCOP: c.26.1.0
Probab=99.74 E-value=9.3e-18 Score=117.91 Aligned_cols=90 Identities=13% Similarity=0.209 Sum_probs=73.6
Q ss_pred ceEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhh-ccCCCEEEE--cCCCCCH
Q psy11152 6 LLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRG-IKWVDEVVE--GAPYVTT 82 (112)
Q Consensus 6 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~-~~~vd~vi~--~~~~~~~ 82 (112)
+++++++|+|||+|.||+.++++|.+.+++++|+++.+| .| .+++|.++|+++++. +++.+.+.+ ++ ..+
T Consensus 3 ~ki~i~~GsFDPiH~GHl~i~~~a~~~~d~viv~v~~~p----~K-~~~~~~~~R~~ml~~a~~~~~~v~v~~~e--~~t 75 (168)
T 3f3m_A 3 HTIAVIPGSFDPITYGHLDIIERSTDRFDEIHVCVLKNS----KK-EGTFSLEERMDLIEQSVKHLPNVKVHQFS--GLL 75 (168)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHGGGSSEEEEEECC----------CCSCHHHHHHHHHHHTTTCTTEEEEECC--SCH
T ss_pred ceEEEEEEEcCcCCHHHHHHHHHHHHhCCEEEEEEcCCC----CC-CCCCCHHHHHHhHHHHhcCCCCEEEEEcC--CCH
Confidence 468999999999999999999999999999999998765 23 478999999999986 566776655 44 357
Q ss_pred HHHHHhcCCCEEEEc----CCCCC
Q psy11152 83 LETLDAYDCDFCVHG----ALEVL 102 (112)
Q Consensus 83 ~~fi~~l~~~~iv~G----~D~~f 102 (112)
.++++++++++++.| .||.+
T Consensus 76 vd~~~~l~~~~~I~G~d~~~d~~~ 99 (168)
T 3f3m_A 76 VDYCEQVGAKTIIRGLRAVSDFEY 99 (168)
T ss_dssp HHHHHHHTCCEEEEEECTTCCHHH
T ss_pred HHHHHHcCCCEEEEcCCchhhhhH
Confidence 889999999999999 67654
No 17
>3nd5_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway; 2.30A {Enterococcus faecalis} SCOP: c.26.1.0 PDB: 3nd6_A* 3nd7_A*
Probab=99.73 E-value=1.9e-17 Score=116.57 Aligned_cols=87 Identities=20% Similarity=0.312 Sum_probs=70.1
Q ss_pred ceEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhh-ccCCCEEEE-cCCCCCHH
Q psy11152 6 LLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRG-IKWVDEVVE-GAPYVTTL 83 (112)
Q Consensus 6 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~-~~~vd~vi~-~~~~~~~~ 83 (112)
|+++++.|+|||+|.||+.++++|++.+|+++|++..++ .| .+++|.++|+++++. +++++.+.+ .+-+..+.
T Consensus 2 m~i~i~~GsFDPiH~GHl~i~~~a~~~~D~viv~v~~~~----~K-~~~~~~~~R~~ml~~a~~~~~~v~v~~~~e~~tv 76 (171)
T 3nd5_A 2 RKIALFPGSFDPMTNGHLNLIERSAKLFDEVIIGVFINT----SK-QTLFTPEEKKYLIEEATKEMPNVRVIMQETQLTV 76 (171)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHHTTCSEEEEEEEC-----------CCCHHHHHHHHHHHHTTCTTEEEEEECSSCHH
T ss_pred CeEEEEEEEccccCHHHHHHHHHHHHHCCCeEEEEecCC----CC-CCCCCHHHHHHHHHHHHccCCCEEEeeCCCCcHH
Confidence 368999999999999999999999999999999987654 23 368999999999985 577887655 22224588
Q ss_pred HHHHhcCCCEEEEc
Q psy11152 84 ETLDAYDCDFCVHG 97 (112)
Q Consensus 84 ~fi~~l~~~~iv~G 97 (112)
+++++++++++++|
T Consensus 77 d~~~~l~~~~~i~G 90 (171)
T 3nd5_A 77 ESAKSLGANFLIRG 90 (171)
T ss_dssp HHHHHHTCCEEEEE
T ss_pred HHHHHCCCCEEEEC
Confidence 99999999999999
No 18
>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A {Thermus thermophilus} SCOP: c.26.1.3
Probab=99.73 E-value=2.8e-17 Score=112.92 Aligned_cols=85 Identities=18% Similarity=0.244 Sum_probs=69.6
Q ss_pred EEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCC-CCCcCHHHHHHHHhh-ccCCCEEEE--cCCCCCHHH
Q psy11152 9 TSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKG-PPVFTQQERYKMVRG-IKWVDEVVE--GAPYVTTLE 84 (112)
Q Consensus 9 v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~-~~i~s~~eR~~~l~~-~~~vd~vi~--~~~~~~~~~ 84 (112)
++++|+|||+|.||+.++++|++.++++++.++.+|. |. .+++|.++|+++++. +.+++.+.+ ++. ...+
T Consensus 3 ~v~~GsFdp~H~GH~~l~~~a~~~~d~v~v~~~~~p~----k~~~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~--~~~~ 76 (160)
T 1od6_A 3 VVYPGSFDPLTNGHLDVIQRASRLFEKVTVAVLENPS----KRGQYLFSAEERLAIIREATAHLANVEAATFSG--LLVD 76 (160)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHSSEEEEEEECC---------CCSSCHHHHHHHHHHHTTTCTTEEEEEECS--CHHH
T ss_pred EEEEeeeCCCCHHHHHHHHHHHHHCCEEEEEEcCCCC----CCCCCCCCHHHHHHHHHHHhcCCCCEEEEecCc--hHHH
Confidence 8999999999999999999999999998888876542 22 268999999999985 567887665 543 4667
Q ss_pred HHHhcCCCEEEEcCC
Q psy11152 85 TLDAYDCDFCVHGAL 99 (112)
Q Consensus 85 fi~~l~~~~iv~G~D 99 (112)
++++++++++++|.|
T Consensus 77 ~l~~l~~~~~v~G~d 91 (160)
T 1od6_A 77 FVRRVGAQAIVKGLR 91 (160)
T ss_dssp HHHHTTCSEEEEEEC
T ss_pred HHHHcCCCEEEEeCC
Confidence 889999999999987
No 19
>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesi transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A* 2qtm_A*
Probab=99.70 E-value=6.4e-18 Score=118.96 Aligned_cols=95 Identities=12% Similarity=0.017 Sum_probs=72.5
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEecCcccccCCC-CCCcCHHHHHHHHhh-ccCCCEEEE--cCCC-
Q psy11152 7 LATSLQSNYDMVHFGHANNLRQAKELG--NYLVVGVHTDEEISKHKG-PPVFTQQERYKMVRG-IKWVDEVVE--GAPY- 79 (112)
Q Consensus 7 ~~v~~~G~FD~~H~GH~~ll~~a~~~~--~~lvv~v~~d~~~~~~k~-~~i~s~~eR~~~l~~-~~~vd~vi~--~~~~- 79 (112)
++++++|+|||+|.||+.++++|++.+ +.+++.+++++.. |. .+++|.++|+++++. +++++.+.+ ++.+
T Consensus 3 ~i~i~~GsFDPvH~GH~~li~~a~~~~~~d~v~~~~~~~~~~---k~~~~~~~~~~R~~ml~~~~~~~~~v~v~~~e~~~ 79 (189)
T 2qtr_A 3 KIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPH---KQGRNITSVESRLQMLELATEAEEHFSICLEELSR 79 (189)
T ss_dssp EEEEEEECCSSCCHHHHC-CHHHHHHTTCSEEEEEECSSCTT---CTTSCCCCHHHHHHHHHHHHTTCTTEEECCTGGGS
T ss_pred eEEEEecCcccccHHHHHHHHHHHHHcCCCEEEEEECCCCCC---ccCCCCCCHHHHHHHHHHHhCCCCCEEEehHHhcC
Confidence 688999999999999999999999998 8888888866532 32 368999999999985 677888776 3211
Q ss_pred ---CCHHHHHHhcCCCE------EEEcCCCCCCc
Q psy11152 80 ---VTTLETLDAYDCDF------CVHGALEVLVS 104 (112)
Q Consensus 80 ---~~~~~fi~~l~~~~------iv~G~D~~f~~ 104 (112)
.-+.+.++.++.++ +++|.|+.|+-
T Consensus 80 ~~~~~~~~~l~~l~~~~p~~~~~~v~G~D~~~~~ 113 (189)
T 2qtr_A 80 KGPSYTYDTMLQLTKKYPDVQFHFIIGGDMVEYL 113 (189)
T ss_dssp CSCCCHHHHHHHHHHHCTTCEEEEEEEHHHHHHG
T ss_pred CCCCCHHHHHHHHHHHCCCCCEEEEEehhhhhhh
Confidence 23455666666555 99999987653
No 20
>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3
Probab=99.69 E-value=2.2e-16 Score=110.84 Aligned_cols=84 Identities=23% Similarity=0.298 Sum_probs=72.4
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHh-hccCCCEEEE--cCCCCCHH
Q psy11152 7 LATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVR-GIKWVDEVVE--GAPYVTTL 83 (112)
Q Consensus 7 ~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~-~~~~vd~vi~--~~~~~~~~ 83 (112)
.++++.|+|||+|.||+.++++|++.+|+++|+++.++ .+. +++|.++|++|++ +++.++.+.+ ++ ..+.
T Consensus 13 ~i~i~~GsFdP~H~GHl~l~~~A~~~~D~viv~v~~~~----~kk-~~~~~~~R~~ml~~a~~~~~~v~v~~~e--~~tv 85 (173)
T 1vlh_A 13 MKAVYPGSFDPITLGHVDIIKRALSIFDELVVLVTENP----RKK-CMFTLEERKKLIEEVLSDLDGVKVDVHH--GLLV 85 (173)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHTTCSEEEEEEECCT----TCC-CSSCHHHHHHHHHHHTTTCTTEEEEEEC--SCHH
T ss_pred eEEEEEEEECcCcHHHHHHHHHHHHHCCEEEEEEeCCC----CCC-CCCCHHHHHHHHHHHhcCCCCEEEecCc--chHH
Confidence 57899999999999999999999999999999999875 222 6899999999998 6877887765 43 2578
Q ss_pred HHHHhcCCCEEEEc
Q psy11152 84 ETLDAYDCDFCVHG 97 (112)
Q Consensus 84 ~fi~~l~~~~iv~G 97 (112)
++++++++++++.|
T Consensus 86 d~l~~l~~~~~i~g 99 (173)
T 1vlh_A 86 DYLKKHGIKVLVRG 99 (173)
T ss_dssp HHHHHHTCCEEEEE
T ss_pred HHHHHhCCCeEEeC
Confidence 89999999999999
No 21
>3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; 1.91A {Methanocaldococcus jannaschii}
Probab=99.69 E-value=1.6e-16 Score=122.94 Aligned_cols=89 Identities=19% Similarity=0.214 Sum_probs=71.5
Q ss_pred CceEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcc--cccCCC-CCCcCHHHHHHHHhhccCCCEEEE--cCCC
Q psy11152 5 NLLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEE--ISKHKG-PPVFTQQERYKMVRGIKWVDEVVE--GAPY 79 (112)
Q Consensus 5 ~~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~--~~~~k~-~~i~s~~eR~~~l~~~~~vd~vi~--~~~~ 79 (112)
++++|+++|.|||||+|||.+|++|++ .+ ++++|.+.+. +. ++ +.++|.++|.++++++ |||.|++ |.-.
T Consensus 51 ~~~~v~~lG~FDg~H~GHq~lI~~a~~-~~-~~~~Vms~~~~~vq--rg~~~l~~~~~R~~~~~~~-GvD~vielpF~~~ 125 (357)
T 3gmi_A 51 KDKIVCDFTEYNPLHKGHKYALEKGKE-HG-IFISVLPGPLERSG--RGIPYFLNRYIRAEMAIRA-GADIVVEGPPMGI 125 (357)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHHT-SS-EEEEEECCTTSBCT--TSSBCSSCHHHHHHHHHHH-TCSEEEECCCGGG
T ss_pred CCCEEEEEEecCccCHHHHHHHHHHHH-cC-CeEEEEcCchHHhc--CCCCcCCCHHHHHHHHHHC-CCCEEEEcCchhh
Confidence 357899999999999999999999999 44 5555555433 32 33 3799999999999999 8999997 4322
Q ss_pred CCHHHHHH-------hcCCCEEEEcC
Q psy11152 80 VTTLETLD-------AYDCDFCVHGA 98 (112)
Q Consensus 80 ~~~~~fi~-------~l~~~~iv~G~ 98 (112)
+++++|++ ++++++||+|+
T Consensus 126 ~s~~~Fv~~~v~ll~~l~~~~iv~G~ 151 (357)
T 3gmi_A 126 MGSGQYMRCLIKMFYSLGAEIIPRGY 151 (357)
T ss_dssp SCHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECC
Confidence 78888875 48999999998
No 22
>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB: 1kaq_A*
Probab=99.68 E-value=1.3e-16 Score=113.14 Aligned_cols=94 Identities=15% Similarity=0.035 Sum_probs=68.0
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEecCcccccCCC-CCCcCHHHHHHHHhh-ccCCCEEEE--cCCC-
Q psy11152 7 LATSLQSNYDMVHFGHANNLRQAKELG--NYLVVGVHTDEEISKHKG-PPVFTQQERYKMVRG-IKWVDEVVE--GAPY- 79 (112)
Q Consensus 7 ~~v~~~G~FD~~H~GH~~ll~~a~~~~--~~lvv~v~~d~~~~~~k~-~~i~s~~eR~~~l~~-~~~vd~vi~--~~~~- 79 (112)
++++++|+|||+|.||+.++++|++.+ +.+++.+++++. .|. .+++|.++|+++++. +++++.+.+ ++..
T Consensus 8 ~~~v~~GsFdp~H~GH~~l~~~a~~~~~~d~v~~~~~~~~~---~k~~~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~~ 84 (194)
T 1kam_A 8 KIGIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIPP---HKQNEDYTDSFHRVEMLKLAIQSNPSFKLELVEMER 84 (194)
T ss_dssp EEEEEEECCSSCCHHHHHHHHHHHHHTTCSEEEEEECCCC------------CHHHHHHHHHHHHTTCTTEEECCGGGST
T ss_pred EEEEEEeccccccHHHHHHHHHHHHHhCCCEEEEEECCCCC---CcCCcCCCCHHHHHHHHHHHHcCCCCeEEeHHHhcC
Confidence 688999999999999999999999998 778888876552 232 368999999999985 677888776 3211
Q ss_pred ---CCHHHHHHhcCCC------EEEEcCCCCCC
Q psy11152 80 ---VTTLETLDAYDCD------FCVHGALEVLV 103 (112)
Q Consensus 80 ---~~~~~fi~~l~~~------~iv~G~D~~f~ 103 (112)
.-+.+.++.++.+ ++++|.|+.++
T Consensus 85 ~~~~~t~~~l~~l~~~~p~~~~~~v~G~D~~~~ 117 (194)
T 1kam_A 85 EGPSYTFDTVSLLKQRYPNDQLFFIIGADMIEY 117 (194)
T ss_dssp TCCCSHHHHHHHHHHHSTTSEEEEEEETTTTTT
T ss_pred CCCCChHHHHHHHHHHCCCCcEEEEEecchhhh
Confidence 1244555555444 99999999876
No 23
>1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT; 1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A*
Probab=99.64 E-value=3.5e-16 Score=112.53 Aligned_cols=90 Identities=17% Similarity=0.154 Sum_probs=69.1
Q ss_pred E-EEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEecCcccccCCCCCCcCHHHHHHHHh-hccCCCEEEEc--CC---
Q psy11152 8 A-TSLQSNYDMVHFGHANNLRQAKELG--NYLVVGVHTDEEISKHKGPPVFTQQERYKMVR-GIKWVDEVVEG--AP--- 78 (112)
Q Consensus 8 ~-v~~~G~FD~~H~GH~~ll~~a~~~~--~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~-~~~~vd~vi~~--~~--- 78 (112)
+ ++++|+|||+|.||+.++++|.+.+ +++++.+++++.. |..+++|.++|+++++ .+++++.+.+. +.
T Consensus 4 i~~i~~GsFdPiH~GH~~l~~~a~~~~~~d~v~~~~~~~~~~---k~~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~~~ 80 (213)
T 1k4m_A 4 LQALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPPH---RPQPEANSVQRKHMLELAIADKPLFTLDERELKRN 80 (213)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHHHTCSCEEEEECSSCTT---SCCCSSCHHHHHHHHHHHHTTCTTEEECCHHHHCS
T ss_pred EEEEEEeCcCCCCHHHHHHHHHHHHHcCCCEEEEEECCCCCC---CCCCCCCHHHHHHHHHHHhccCCCEEEeHHHhcCC
Confidence 6 8999999999999999999999987 7788877765422 3235899999999998 56778877762 20
Q ss_pred C-CCHHHHHHhc----CCC---EEEEcCCC
Q psy11152 79 Y-VTTLETLDAY----DCD---FCVHGALE 100 (112)
Q Consensus 79 ~-~~~~~fi~~l----~~~---~iv~G~D~ 100 (112)
. ..+.++++.+ +++ ++++|.|+
T Consensus 81 ~~s~t~~~l~~l~~~~~~~~~~~~i~G~D~ 110 (213)
T 1k4m_A 81 APSYTAQTLKEWRQEQGPDVPLAFIIGQDS 110 (213)
T ss_dssp SCCCHHHHHHHHHHHHCTTSCEEEEEEHHH
T ss_pred CCCcHHHHHHHHHHHhCCCCcEEEEEehhh
Confidence 1 2246676543 899 99999975
No 24
>1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa} PDB: 1yul_A* 1yun_A*
Probab=99.60 E-value=3.8e-15 Score=109.59 Aligned_cols=93 Identities=19% Similarity=0.240 Sum_probs=70.4
Q ss_pred CCceEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEecCcccccCCCCCCcCHHHHHHHHhh-ccCCCEEEEcCCC-
Q psy11152 4 LNLLATSLQSNYDMVHFGHANNLRQAKELG--NYLVVGVHTDEEISKHKGPPVFTQQERYKMVRG-IKWVDEVVEGAPY- 79 (112)
Q Consensus 4 ~~~~~v~~~G~FD~~H~GH~~ll~~a~~~~--~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~-~~~vd~vi~~~~~- 79 (112)
..++++++.|+|||+|.||+.++++|.+.+ +.++++++.++.. |..++++.++|+++++. +.+++.+.+.+-+
T Consensus 21 ~~~~i~i~~GsFdPiH~GHl~li~~a~~~~~ld~v~v~~~~~~p~---K~~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~ 97 (242)
T 1yum_A 21 MGKRIGLFGGTFDPVHIGHMRSAVEMAEQFALDELRLLPNARPPH---RETPQVSAAQRLAMVERAVAGVERLTVDPREL 97 (242)
T ss_dssp -CCEEEEEEECCTTCCHHHHHHHHHHHHHHTCSEEEEEECCCCGG---GSCTTCCHHHHHHHHHHHHTTCTTEEECCGGG
T ss_pred CCceEEEEEeeCcHhhHHHHHHHHHHHHHcCCCEEEEEEcCCCCC---CCCCCCCHHHHHHHHHHHhcCCCeEEEeeeee
Confidence 345688999999999999999999999987 8888888887522 32368899999999984 6678877763211
Q ss_pred -----CCHHHHHHh----cCCC---EEEEcCC
Q psy11152 80 -----VTTLETLDA----YDCD---FCVHGAL 99 (112)
Q Consensus 80 -----~~~~~fi~~----l~~~---~iv~G~D 99 (112)
..+.+.++. ++++ ++++|.|
T Consensus 98 ~~~~~sytvdtl~~l~~~~~p~~~~~fI~G~D 129 (242)
T 1yum_A 98 QRDKPSYTIDTLESVRAELAADDQLFMLIGWD 129 (242)
T ss_dssp GSSSSCCHHHHHHHHHHHSCTTCEEEEEEEHH
T ss_pred cCCCCCCHHHHHHHHHHHhCCCCcEEEEEehh
Confidence 235555543 3677 8999986
No 25
>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Thermotoga maritima}
Probab=99.58 E-value=1.6e-16 Score=119.53 Aligned_cols=78 Identities=13% Similarity=0.109 Sum_probs=60.4
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCccc--ccCCC-CCCcCHHHHHHHHhhccCCCEEEEcCC-CCCH
Q psy11152 7 LATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEI--SKHKG-PPVFTQQERYKMVRGIKWVDEVVEGAP-YVTT 82 (112)
Q Consensus 7 ~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~--~~~k~-~~i~s~~eR~~~l~~~~~vd~vi~~~~-~~~~ 82 (112)
+++++.|+||++|.||++||++|++.++.++|++.++|.. ++... ..+.+.++|.++++++ |||.++..+. ++.|
T Consensus 22 ~~V~~vgtfdgLH~GH~sLI~~A~~~ad~vVVSffvnP~qf~~~ed~~~yp~tle~d~~lL~~~-GVD~vf~p~~~~m~p 100 (280)
T 2ejc_A 22 KTIGFVPTMGYLHEGHLSLVRRARAENDVVVVSIFVNPTQFGPNEDYERYPRDFERDRKLLEKE-NVDCIFHPSVEEMYP 100 (280)
T ss_dssp CCEEEEEECSCCCHHHHHHHHHHHHHSSEEEEEECCCGGGCCTTSCGGGSCCCHHHHHHHHHTT-TCSEEECCCHHHHSC
T ss_pred CEEEEEcCCccccHHHHHHHHHHHHhCCEEEEEEeCChHHhcCCcccccCCCCHHHHHHHHHHC-CCCEEEeCCHHHCCC
Confidence 4566679999999999999999999999999999877742 22221 2578899999999999 6999997421 1344
Q ss_pred HHH
Q psy11152 83 LET 85 (112)
Q Consensus 83 ~~f 85 (112)
++|
T Consensus 101 ~~f 103 (280)
T 2ejc_A 101 PDF 103 (280)
T ss_dssp TTC
T ss_pred cCc
Confidence 455
No 26
>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide binding fold, structural genomics, PSI; HET: NAD; 1.90A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A* 1m8k_A*
Probab=99.56 E-value=7.9e-15 Score=103.12 Aligned_cols=91 Identities=15% Similarity=0.066 Sum_probs=66.6
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEE-ecCcccccCCCCCCcCHHHHHHHHhhc-cCC----CEEEE--cCC
Q psy11152 7 LATSLQSNYDMVHFGHANNLRQAKELGNYLVVGV-HTDEEISKHKGPPVFTQQERYKMVRGI-KWV----DEVVE--GAP 78 (112)
Q Consensus 7 ~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v-~~d~~~~~~k~~~i~s~~eR~~~l~~~-~~v----d~vi~--~~~ 78 (112)
++++++|+|||+|.||+.++++|++.++++++++ +.++ +.+..+++|.++|+++++.. .+. +.+.+ ++.
T Consensus 4 ~~~i~~G~Fdp~H~GH~~l~~~a~~~~d~v~v~v~~~~~---p~~~~~~~~~~~R~~~~~~a~~~~~~~~~~v~v~~~d~ 80 (181)
T 1ej2_A 4 MRGLLVGRMQPFHRGHLQVIKSILEEVDELIICIGSAQL---SHSIRDPFTAGERVMMLTKALSENGIPASRYYIIPVQD 80 (181)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHTTTCSEEEEEECSTTC---CSSSSSCSCHHHHHHHHHHHHHHTTCCGGGEEEEECCC
T ss_pred eEEEEEEEcCCcCHHHHHHHHHHHHhCCeeEEEECCCCC---CcCCCCCCCHHHHHHHHHHHHhhCCCCCCcEEEEecCc
Confidence 4799999999999999999999999999988877 4443 12223578999999999864 223 34443 554
Q ss_pred CC---CHHHHHHh--cCCCEEEEcCCC
Q psy11152 79 YV---TTLETLDA--YDCDFCVHGALE 100 (112)
Q Consensus 79 ~~---~~~~fi~~--l~~~~iv~G~D~ 100 (112)
.. .+.+|+++ ..++.+++|.|+
T Consensus 81 ~~~~~~w~~~~~~l~~~~~~~v~gr~~ 107 (181)
T 1ej2_A 81 IECNALWVGHIKMLTPPFDRVYSGNPL 107 (181)
T ss_dssp CSCHHHHHHHHHHHSCCCSEEECCCHH
T ss_pred cCCHHHHHHHHHHHCCCCCEEEECCHH
Confidence 32 34556554 378899999875
No 27
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}
Probab=99.49 E-value=5.9e-14 Score=105.58 Aligned_cols=94 Identities=14% Similarity=0.124 Sum_probs=67.4
Q ss_pred ceEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhccCCCE----EE--EcCCC
Q psy11152 6 LLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDE----VV--EGAPY 79 (112)
Q Consensus 6 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~~~vd~----vi--~~~~~ 79 (112)
|++++++|+|||+|+||+.++++|++.++++++++.+++... +...++|.++|+++++.. ..|. ++ .+++.
T Consensus 7 ~~~~i~~G~FdP~H~GH~~li~~a~~~~d~v~v~v~~~~~p~--~~~~~~~~~~R~~m~~~~-~~~~~~~~~~~i~~~d~ 83 (341)
T 2qjo_A 7 YQYGIYIGRFQPFHLGHLRTLNLALEKAEQVIIILGSHRVAA--DTRNPWRSPERMAMIEAC-LSPQILKRVHFLTVRDW 83 (341)
T ss_dssp EEEEEEEECCTTCCHHHHHHHHHHHHHEEEEEEEEEEETCCC--CSSSCSCHHHHHHHHHTT-SCHHHHTTEEEEEEECC
T ss_pred eeEEEEEEEeCCCCHHHHHHHHHHHHhCCeEEEEECCcccCC--CCCCCCCHHHHHHHHHHH-hhhccCCeEEEEECCCC
Confidence 578999999999999999999999999988877777654221 222358999999999976 4443 33 35432
Q ss_pred ----CCHHHHH----HhcC---CCEEEEcCCCCC
Q psy11152 80 ----VTTLETL----DAYD---CDFCVHGALEVL 102 (112)
Q Consensus 80 ----~~~~~fi----~~l~---~~~iv~G~D~~f 102 (112)
.++.+|+ +.+. ++.+++|.|+..
T Consensus 84 ~~~~~~w~~~~~~l~~~l~r~~~~~~~~g~~~~~ 117 (341)
T 2qjo_A 84 LYSDNLWLAAVQQQVLKITGGSNSVVVLGHRKDA 117 (341)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCSCEEEEECCCSG
T ss_pred cCChHHHHHHHHHHhHHhcCCCceEEEEcCCCCC
Confidence 2344554 3332 789999988753
No 28
>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus}
Probab=99.47 E-value=1.2e-13 Score=95.03 Aligned_cols=59 Identities=22% Similarity=0.323 Sum_probs=49.9
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcC-CeEEEEEecCcccccCCCCCCcCHHHHHHHHhhc
Q psy11152 8 ATSLQSNYDMVHFGHANNLRQAKELG-NYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGI 67 (112)
Q Consensus 8 ~v~~~G~FD~~H~GH~~ll~~a~~~~-~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~ 67 (112)
++++.|+||++|.||+.++++|.+.+ ++++|++++++...+ +..+++|.++|+++++..
T Consensus 2 ~~i~gGtFDPiH~GHl~l~~~a~~~~~d~viv~v~~~~~~~k-~~~~~~~~~~R~~ml~~a 61 (148)
T 3do8_A 2 KVALGGTFEPLHEGHKKLIDVAIKLGGRDITIGVTSDRMARA-RIRSVLPFAIRAENVKRY 61 (148)
T ss_dssp CEEEEECCSSCCHHHHHHHHHHHHHHTTCEEEEEECHHHHHH-HSCCCSCHHHHHHHHHHH
T ss_pred EEEEEeeCCCCCHHHHHHHHHHHHhCCCEEEEEECCCccccc-cCCCCCCHHHHHHHHHHH
Confidence 58999999999999999999999986 789999999875422 124789999999998753
No 29
>2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat, nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB: 2h2a_A*
Probab=99.41 E-value=1.7e-13 Score=96.73 Aligned_cols=91 Identities=13% Similarity=0.022 Sum_probs=63.5
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEecCcccccCCC-CCCcCHHHHHHHHhh-ccCCCEEEEcC-----
Q psy11152 7 LATSLQSNYDMVHFGHANNLRQAKELG--NYLVVGVHTDEEISKHKG-PPVFTQQERYKMVRG-IKWVDEVVEGA----- 77 (112)
Q Consensus 7 ~~v~~~G~FD~~H~GH~~ll~~a~~~~--~~lvv~v~~d~~~~~~k~-~~i~s~~eR~~~l~~-~~~vd~vi~~~----- 77 (112)
++++++|+|||+|.||+.++++|.+.+ +.+++.+++++.. |+ .+++|.++|+++++. +++.+.+.+.+
T Consensus 3 ~~~v~~GsFdp~H~GH~~l~~~a~~~~~~d~v~~~~~~~~~~---k~~~~~~~~~~R~~m~~~a~~~~~~v~v~~~e~~~ 79 (189)
T 2h29_A 3 KIVLYGGQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSPL---KKHHDFIDVQHRLTMIQMIIDELGFGDICDDEIKR 79 (189)
T ss_dssp EEEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECSBCTT---SCCCSSCCCHHHHHHHHHHHHHHTCCEECCHHHHH
T ss_pred eEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEECCCCCC---CcCCCCCCHHHHHHHHHHHHcCCCCEEEehHHhcC
Confidence 688999999999999999999999986 7777666554422 32 368999999999985 55555544421
Q ss_pred -CCCCHHHHH---HhcCCC---EEEEcCCC
Q psy11152 78 -PYVTTLETL---DAYDCD---FCVHGALE 100 (112)
Q Consensus 78 -~~~~~~~fi---~~l~~~---~iv~G~D~ 100 (112)
...-+.+.+ ++..++ ++++|.|.
T Consensus 80 ~~~syt~dtl~~l~~~~p~~~~~~i~G~D~ 109 (189)
T 2h29_A 80 GGQSYTYDTIKAFKEQHKDSELYFVIGTDQ 109 (189)
T ss_dssp CSBCCHHHHHHHHHHHSTTEEEEEEEEHHH
T ss_pred CCCCCHHHHHHHHHHHCCCCcEEEEEecch
Confidence 111233444 334466 99999874
No 30
>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3
Probab=99.37 E-value=1.5e-12 Score=90.36 Aligned_cols=89 Identities=17% Similarity=0.211 Sum_probs=62.3
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEE-ecCcccccCCCCCCcCHHHHHHHHhh-ccCCC-EEEE--cCCC---
Q psy11152 8 ATSLQSNYDMVHFGHANNLRQAKELGNYLVVGV-HTDEEISKHKGPPVFTQQERYKMVRG-IKWVD-EVVE--GAPY--- 79 (112)
Q Consensus 8 ~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v-~~d~~~~~~k~~~i~s~~eR~~~l~~-~~~vd-~vi~--~~~~--- 79 (112)
+++++|+|||+|.||+.++++|.+.++++++++ +.++ +.+...++|.++|+++++. +++.+ .+.+ ++..
T Consensus 2 i~i~~GsFdp~H~GH~~l~~~a~~~~d~v~v~v~~~~~---p~~~~~~~~~~~R~~m~~~~~~~~~~~v~v~~~d~l~~~ 78 (168)
T 1f9a_A 2 RGFIIGRFQPFHKGHLEVIKKIAEEVDEIIIGIGSAQK---SHTLENPFTAGERILMITQSLKDYDLTYYPIPIKDIEFN 78 (168)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHTTTCSEEEEEECSTTC---CSSSSCCSCHHHHHHHHHHHHTTSSCEEEEEECCCCSCG
T ss_pred EEEEEEecCCcCHHHHHHHHHHHHhCCeEEEEEcCCCC---CCCCCCCCCHHHHHHHHHHHHhcCCCceEEEeeCCcccH
Confidence 689999999999999999999999999988877 4444 1222245799999999985 55555 4433 4432
Q ss_pred CCHHHHHHh--cCCCEEEEcCC
Q psy11152 80 VTTLETLDA--YDCDFCVHGAL 99 (112)
Q Consensus 80 ~~~~~fi~~--l~~~~iv~G~D 99 (112)
....+++++ ..++.+++|.+
T Consensus 79 ~~w~~~~~~~~~~~~~~~~~~~ 100 (168)
T 1f9a_A 79 SIWVSYVESLTPPFDIVYSGNP 100 (168)
T ss_dssp GGHHHHHHHHSCCCSEEECCCH
T ss_pred HHHHHHHHHhccCCCEEEECcH
Confidence 123344433 35677777755
No 31
>1nup_A FKSG76; NAD biosynthesis, mitochondria, pyridine adenylyltransferase catalysis, transferase; HET: NMN; 1.90A {Homo sapiens} SCOP: c.26.1.3 PDB: 1nuq_A* 1nur_A 1nus_A* 1nut_A* 1nuu_A*
Probab=99.30 E-value=2.3e-12 Score=95.02 Aligned_cols=75 Identities=11% Similarity=-0.002 Sum_probs=51.9
Q ss_pred CCCCCceEEEEecccCcCCHHHHHHHHHHHHcCCe----EEEEEecCcccccCCCCCCcCHHHHHHHHhh-ccCCCEEEE
Q psy11152 1 METLNLLATSLQSNYDMVHFGHANNLRQAKELGNY----LVVGVHTDEEISKHKGPPVFTQQERYKMVRG-IKWVDEVVE 75 (112)
Q Consensus 1 ~~~~~~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~----lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~-~~~vd~vi~ 75 (112)
|+.+.+++++++|+|||+|.||+.++++|.+.++. .+|++...|...+.+...+++.++|++|++. +.+.+.+.+
T Consensus 1 m~~~~~~i~i~~GsFdPiH~GHl~l~~~a~~~~~~~~~~~vv~~~~~p~~~~~~k~~~~~~~~R~~m~~~ai~~~~~~~v 80 (252)
T 1nup_A 1 MKSRIPVVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDTYGKKDLAASHHRVAMARLALQTSDWIRV 80 (252)
T ss_dssp --CCEEEEEEEEECCTTCCHHHHHHHHHHHHHHHHTTSEEEEEEEEEECCTTCSSSCCCCHHHHHHHHHHHGGGCSSEEE
T ss_pred CCCCCceEEEEEecCcHhhHHHHHHHHHHHHHhcccCCceEEEEEEeCCCCcccCCCCCCHHHHHHHHHHHhcCCCceEe
Confidence 66677788999999999999999999999988642 4543333332211122358999999999984 555555544
No 32
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=99.30 E-value=3.8e-12 Score=96.29 Aligned_cols=60 Identities=13% Similarity=0.179 Sum_probs=49.5
Q ss_pred ceEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhc
Q psy11152 6 LLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGI 67 (112)
Q Consensus 6 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~ 67 (112)
+++++++|+|||+|.||+.++++|.+.+++++|++.+++... +..+.+|.++|++|++..
T Consensus 7 ~~~~i~~GtFdP~h~GHl~~~~~a~~~~d~~~~~v~~~~~~~--~~~~~~~~~~R~~m~~~~ 66 (352)
T 2qjt_B 7 YDISVFIGRFQPFHKGHLHNIIIALQNSKKVIINIGSCFNTP--NIKNPFSFEQRKQMIESD 66 (352)
T ss_dssp EEEEEEEECCTTCCHHHHHHHHHHHHSEEEEEEEEEEESCCC--CSSSCSCHHHHHHHHHHH
T ss_pred ccEEEEEEecCCCChHHHHHHHHHHHhCCcEEEEECCCCCCc--ccCCCCCHHHHHHHHHHH
Confidence 468999999999999999999999999999999888754221 122468999999999853
No 33
>1v8f_A Pantoate-beta-alanine ligase; rossmann fold, dimer, structural genomics, riken STR genomics/proteomics initiative, RSGI; HET: P6G; 1.90A {Thermus thermophilus} SCOP: c.26.1.4 PDB: 1ufv_A
Probab=99.30 E-value=1.7e-13 Score=102.82 Aligned_cols=87 Identities=13% Similarity=-0.000 Sum_probs=68.4
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCccc--ccCCC-CCCcCHHHHHHHHhhccCCCEEEE--cCCCCC
Q psy11152 7 LATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEI--SKHKG-PPVFTQQERYKMVRGIKWVDEVVE--GAPYVT 81 (112)
Q Consensus 7 ~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~--~~~k~-~~i~s~~eR~~~l~~~~~vd~vi~--~~~~~~ 81 (112)
..|.++|+ +|.||++||++|++.++.++|++.++|.. ++... ..+.+.++|.++++++ |||.++. |+ +++
T Consensus 20 ~~VpTmG~---lH~GH~~Li~~A~~~a~~vVvsff~nP~qf~~~ed~~~yp~tle~d~~ll~~~-GvD~vf~p~f~-~m~ 94 (276)
T 1v8f_A 20 GFVPTMGY---LHRGHLALVERARRENPFVVVSVFVNPLQFGPGEDYHRYPRDLERDRALLQEA-GVDLLFAPGVE-EMY 94 (276)
T ss_dssp EEEEECSS---CCHHHHHHHHHHHHHCSEEEEEECCCGGGCCTTSSTTTSCCCHHHHHHHHHHT-TCSEEECCCHH-HHS
T ss_pred eEEEeCCC---ccHHHHHHHHHHHHhCCEEEEEEECCHHHhCCCcccCCCCcCHHHHHHHHHhC-CCCEEEeCChH-hCC
Confidence 45789999 99999999999999999999999998853 22221 2689999999999999 7999886 33 256
Q ss_pred HHHHHHh----cCCCEEEEcC
Q psy11152 82 TLETLDA----YDCDFCVHGA 98 (112)
Q Consensus 82 ~~~fi~~----l~~~~iv~G~ 98 (112)
|++|+.. .+++.+++|.
T Consensus 95 p~~f~~~v~~~~~~~~vl~G~ 115 (276)
T 1v8f_A 95 PEGFATRVQVEGPLTALWEGA 115 (276)
T ss_dssp CTTCCEEEEECSHHHHSTHHH
T ss_pred CcCCeEEEEecCCcceEEecC
Confidence 6666533 4567777887
No 34
>3ag6_A Pantothenate synthetase; ATP-dependent enzyme, ATP-binding, nucleotide-binding, pantothenate biosynthesis; HET: PAJ PG4; 1.85A {Staphylococcus aureus} PDB: 3ag5_A* 2x3f_A*
Probab=99.30 E-value=4.1e-13 Score=101.02 Aligned_cols=93 Identities=14% Similarity=0.020 Sum_probs=72.8
Q ss_pred EEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCccc--ccCCC-CCCcCHHHHHHHHhhccCCCEEEEcC-CCCCHHH
Q psy11152 9 TSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEI--SKHKG-PPVFTQQERYKMVRGIKWVDEVVEGA-PYVTTLE 84 (112)
Q Consensus 9 v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~--~~~k~-~~i~s~~eR~~~l~~~~~vd~vi~~~-~~~~~~~ 84 (112)
|.++|+ +|.||++||++|++.++.++|++.++|.. ++..- ..+.+.+++.++++++ |||.++..+ .++.|++
T Consensus 28 VpTmG~---lH~GH~~LI~~a~~~a~~vVvsffvnP~qf~~~ed~~~yprtle~d~~ll~~~-GvD~vf~p~~~~myp~~ 103 (283)
T 3ag6_A 28 IPTMGA---LHDGHLTMVRESVSTNDITIVSVFVNPLQFGPNEDFDAYPRQIDKDLELVSEV-GADIVFHPAVEDMYPGE 103 (283)
T ss_dssp EEECSS---CCHHHHHHHHHHHTTSSEEEEEECCCGGGCCTTSSTTTSCCCHHHHHHHHHHH-TCSEEECCCHHHHSCSS
T ss_pred EECCcc---ccHHHHHHHHHHHHhCCEEEEEEeCChhhcCCccccccCCCCHHHHHHHHHhC-CCCEEEeCCHHHCCCCC
Confidence 448997 99999999999999999999999998853 22221 2589999999999999 899988722 1244555
Q ss_pred HH-----H--------hcCCC-------------EEEEcCCCCCCcc
Q psy11152 85 TL-----D--------AYDCD-------------FCVHGALEVLVSL 105 (112)
Q Consensus 85 fi-----~--------~l~~~-------------~iv~G~D~~f~~~ 105 (112)
|+ . .+++. .+|.|+|+.||.-
T Consensus 104 f~~~v~~~~l~~~L~G~~rp~hF~GV~TVV~KLf~iV~p~~~~FG~K 150 (283)
T 3ag6_A 104 LGIDVKVGPLADVLEGAKRPGHFDGVVTVVNKLFNIVMPDYAYFGKK 150 (283)
T ss_dssp CSEEEEECGGGSSTHHHHSTTHHHHHHHHHHHHHHHHCCSEEEEEGG
T ss_pred ceEEEeccccchhhccCCCCCeecchhhHhhhhcEEecCceEEECCC
Confidence 52 1 38899 8999999999964
No 35
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.30 E-value=5.5e-12 Score=96.45 Aligned_cols=67 Identities=22% Similarity=0.172 Sum_probs=53.0
Q ss_pred ceEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCccc-----ccCCCCCCcCHHHHHHHHhh-ccCCCE
Q psy11152 6 LLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEI-----SKHKGPPVFTQQERYKMVRG-IKWVDE 72 (112)
Q Consensus 6 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~-----~~~k~~~i~s~~eR~~~l~~-~~~vd~ 72 (112)
+++++++|+|||+|.||+.++++|.+.+|+++|+++.++.. ...+....+|.++|++|++. +++.+.
T Consensus 2 ~~~~i~~GtFdP~h~GHl~~~~~a~~~~d~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~R~~m~~~~~~~~~~ 74 (365)
T 1lw7_A 2 KKVGVIFGKFYPVHTGHINMIYEAFSKVDELHVIVCSDTVRDLKLFYDSKMKRMPTVQDRLRWMQQIFKYQKN 74 (365)
T ss_dssp CCEEEEEECCSSCCHHHHHHHHHHHTTCSEEEEEEEECHHHHHHHHHHTTCSSCCCHHHHHHHHHHHTSTTTT
T ss_pred CcEEEEEEeeCCCCHHHHHHHHHHHHHCCEEEEEECCCCccccccccccccCCCCCHHHHHHHHHHHhhcCCC
Confidence 46899999999999999999999999999999999988742 11111224899999999974 455443
No 36
>1kqn_A Nmnat, nicotinamide mononucleotide adenylyl transferase; nucleotidyltransferase superfamily; HET: NAD; 2.20A {Homo sapiens} SCOP: c.26.1.3 PDB: 1kqo_A* 1kr2_A* 1kku_A 1gzu_A*
Probab=99.27 E-value=5.9e-12 Score=94.34 Aligned_cols=68 Identities=15% Similarity=-0.003 Sum_probs=50.0
Q ss_pred ceEEEEecccCcCCHHHHHHHHHHHHcCCe-----EEE-EEecCcccccCCCCCCcCHHHHHHHHhh-ccCCCEEEE
Q psy11152 6 LLATSLQSNYDMVHFGHANNLRQAKELGNY-----LVV-GVHTDEEISKHKGPPVFTQQERYKMVRG-IKWVDEVVE 75 (112)
Q Consensus 6 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~-----lvv-~v~~d~~~~~~k~~~i~s~~eR~~~l~~-~~~vd~vi~ 75 (112)
+++++++|+|||+|.||+.++++|.+.++. +++ .+.+.+.. ..| ..+++.++|++|++. +.+.+.+.+
T Consensus 8 ~~i~i~gGsFDPiH~GHl~l~~~a~~~~~~d~~~~vvv~~f~P~~~~-~~K-~~l~s~~~R~~ml~~ai~~~~~~~v 82 (279)
T 1kqn_A 8 EVVLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDA-YKK-KGLIPAYHRVIMAELATKNSKWVEV 82 (279)
T ss_dssp EEEEEEEECCTTCCHHHHHHHHHHHHHHHHTSSEEEEEEEEEECCGG-GCC-TTCCCHHHHHHHHHHHTTTCSSEEE
T ss_pred ceEEEEEeeecHhhHHHHHHHHHHHHHhcccCCceEEEEEEcCCCCC-ccc-cCCCCHHHHHHHHHHHhcCCCcEEE
Confidence 467899999999999999999999987632 443 33333321 223 358999999999985 467787766
No 37
>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structu genomics, PSI; 1.65A {Vibrio parahaemolyticus}
Probab=99.10 E-value=9.3e-11 Score=82.59 Aligned_cols=55 Identities=11% Similarity=0.143 Sum_probs=43.2
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhh
Q psy11152 7 LATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRG 66 (112)
Q Consensus 7 ~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~ 66 (112)
++++++|+|||+|.||+.+++ |.+..++++++++.+. +.+ .++.+.++|++|++.
T Consensus 3 ~igi~gGsFdPih~GHl~i~~-a~~~~d~v~~~p~~~~---~~k-~~~~~~~~R~~m~~~ 57 (177)
T 3h05_A 3 KIAIFGSAFNPPSLGHKSVIE-SLSHFDLVLLEPSIAH---AWG-KNMLDYPIRCKLVDA 57 (177)
T ss_dssp EEEEEEECCSSCCHHHHHHHT-TCTTSSEEEEEECC-----------CCCHHHHHHHHHH
T ss_pred EEEEEEeccchhhHHHHHHHH-HHHHCCEEEEEECCCC---CCC-CCCCCHHHHHHHHHH
Confidence 689999999999999999998 7777798888887642 122 257899999999975
No 38
>3cov_A Pantothenate synthetase; pantothenate biosynthesis, enzym ligase, drug design, ATP-binding, magnesium, metal-binding; 1.50A {Mycobacterium tuberculosis} SCOP: c.26.1.4 PDB: 3cow_A* 3coy_A* 3coz_A* 3imc_A* 3ime_A* 3img_A* 3iob_A* 3ioc_A* 3iod_A* 3ioe_A* 3iub_A* 3iue_A* 3ivc_A* 3ivg_A* 3ivx_A* 2a84_A* 1n2b_A* 1n2e_A* 1n2g_A* 1n2h_A* ...
Probab=99.08 E-value=1.6e-11 Score=93.07 Aligned_cols=91 Identities=15% Similarity=0.079 Sum_probs=65.8
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHH-cCCeEEEEEecCccc-ccCCC--CCCcCHHHHHHHHhhccCCCEEEEcCC-CCC
Q psy11152 7 LATSLQSNYDMVHFGHANNLRQAKE-LGNYLVVGVHTDEEI-SKHKG--PPVFTQQERYKMVRGIKWVDEVVEGAP-YVT 81 (112)
Q Consensus 7 ~~v~~~G~FD~~H~GH~~ll~~a~~-~~~~lvv~v~~d~~~-~~~k~--~~i~s~~eR~~~l~~~~~vd~vi~~~~-~~~ 81 (112)
+++.+..++..+|.||++||++|++ .++.++|++..+|.. .+... ..+.+++++.++++++ |||.++..+. ++.
T Consensus 33 ~~vg~VpTmG~LH~GH~sLI~~A~~~~a~~vVvSffvnP~qF~~~ed~~~yprtle~d~~lL~~~-GVD~vf~p~~~~my 111 (301)
T 3cov_A 33 RRVMLVPTMGALHEGHLALVRAAKRVPGSVVVVSIFVNPMQFGAGGDLDAYPRTPDDDLAQLRAE-GVEIAFTPTTAAMY 111 (301)
T ss_dssp CEEEEEEECSCCCHHHHHHHHHHHTSTTEEEEEEECCCGGGCCSSSHHHHSCCCHHHHHHHHHHT-TCCEEECCCHHHHC
T ss_pred CcEEEEecCCcccHHHHHHHHHHHHhcCCEEEEEEcCChhhcCCccccccCCCCHHHHHHHHHhC-CCCEEEeCCHHHCC
Confidence 3344445555599999999999999 899899999988853 12111 2588999999999999 8999887321 255
Q ss_pred HHHHHHh---cCCCEEEEcC
Q psy11152 82 TLETLDA---YDCDFCVHGA 98 (112)
Q Consensus 82 ~~~fi~~---l~~~~iv~G~ 98 (112)
|++|+.. -+++.+++|.
T Consensus 112 P~~f~~~v~~~~~~~vl~G~ 131 (301)
T 3cov_A 112 PDGLRTTVQPGPLAAELEGG 131 (301)
T ss_dssp TTCSCSEEECCGGGGSGGGS
T ss_pred CCCceEEEecCCcceeeecC
Confidence 6666532 1456778888
No 39
>3uk2_A Pantothenate synthetase; AMP, structural genomics, seattle S genomics center for infectious disease, ssgcid, ligase; HET: AMP; 2.25A {Burkholderia thailandensis} SCOP: c.26.1.0
Probab=98.66 E-value=7.3e-08 Score=72.36 Aligned_cols=67 Identities=18% Similarity=0.166 Sum_probs=55.4
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCccc-cc-CC-CCCCcCHHHHHHHHhhccCCCEEEE
Q psy11152 8 ATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEI-SK-HK-GPPVFTQQERYKMVRGIKWVDEVVE 75 (112)
Q Consensus 8 ~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~-~~-~k-~~~i~s~~eR~~~l~~~~~vd~vi~ 75 (112)
++.+..+..++|.||++|+++|++.++.++|++..+|.. .+ .. ...+.+++++.+++++. |||.++.
T Consensus 23 ~ig~VPTMG~LH~GH~sLi~~A~~~~d~vVvSifvnP~qf~~~ed~~~yprt~e~d~~ll~~~-GvD~vF~ 92 (283)
T 3uk2_A 23 RTAFVPTMGNLHEGHLSLMRLARQHGDPVVASIFVNRLQFGPNEDFDKYPRTLQEDIEKLQKE-NVYVLFA 92 (283)
T ss_dssp SCEEEEECSSCCHHHHHHHHHHHTTCSSEEEEECCCGGGSCTTSCTTTSCCCHHHHHHHHHTT-TCSEEEC
T ss_pred eEEEECCCCcccHHHHHHHHHHHHhCCEEEEEEcCCHHHcCCcccccccCCCHHHHHHHHHHc-CCCEEEe
Confidence 455667999999999999999999999999999888853 22 12 23689999999999999 8998764
No 40
>3inn_A Pantothenate synthetase; ssgcid, SBRI, UW, decode, NIH, niaid, pantoate beta alanine ligase, ATP-binding, cytoplasm, ligase; HET: ATP; 2.10A {Brucella melitensis}
Probab=98.39 E-value=1.9e-06 Score=65.49 Aligned_cols=66 Identities=14% Similarity=0.118 Sum_probs=52.9
Q ss_pred ceEEE--EecccCcCCHHHHHHHHHHHHcCCeEEEEEecCccc-ccCC--CCCCcCHHHHHHHHhhccCCCEEEE
Q psy11152 6 LLATS--LQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEI-SKHK--GPPVFTQQERYKMVRGIKWVDEVVE 75 (112)
Q Consensus 6 ~~~v~--~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~-~~~k--~~~i~s~~eR~~~l~~~~~vd~vi~ 75 (112)
+++++ |.| .+|.||+.|+++|++.++.++|+|..+|.- .+.. ....-++++.++++++. |||.|+.
T Consensus 43 ~~IgfVPTMG---~LH~GHlsLi~~A~~~~d~vVVSIFVNP~QF~~~EDl~~YPRtle~D~~ll~~~-GvD~vF~ 113 (314)
T 3inn_A 43 KKIGFVPTMG---YLHKGHLELVRRARVENDVTLVSIFVNPLQFGANEDLGRYPRDLERDAGLLHDA-QVDYLFA 113 (314)
T ss_dssp CCEEEEEECS---SCCHHHHHHHHHHHHHCSEEEEEECCCGGGSCTTSSTTTCCCCHHHHHHHHHHT-TCSEEEC
T ss_pred CeEEEEcCCC---ccCHHHHHHHHHHHHhCCEEEEEECCChhhcCCCccccccCCCHHHHHHHHHhC-CCCEEEC
Confidence 45666 777 699999999999999999999999988852 2221 22678999999999999 8997753
No 41
>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph, bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia pachyptila} SCOP: b.122.1.3 c.26.1.5
Probab=98.33 E-value=2.4e-06 Score=66.82 Aligned_cols=90 Identities=14% Similarity=0.036 Sum_probs=60.5
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEecCcccccCCCCCCcCHHHHHHHHhhc-cC---CCEEEE--cCC
Q psy11152 7 LATSLQSNYDMVHFGHANNLRQAKELG--NYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGI-KW---VDEVVE--GAP 78 (112)
Q Consensus 7 ~~v~~~G~FD~~H~GH~~ll~~a~~~~--~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~-~~---vd~vi~--~~~ 78 (112)
++|++.|+|||+|+||..+.+.|.+.. +.+++.....+ .| +-..+.+.|+++++.+ .+ -+.+++ ++-
T Consensus 193 ~~VvafqTrNPiHrgH~~l~~~Ale~~~~D~vll~P~~g~----~K-~~di~~~~R~~~~~~~~~~~~p~~~v~l~~~p~ 267 (396)
T 1jhd_A 193 SKVVAFQTRNPMHRAHEELCRMAMESLDADGVVVHMLLGK----LK-KGDIPAPVRDAAIRTMAEVYFPPNTVMVTGYGF 267 (396)
T ss_dssp SSEEEEEESSCCCHHHHHHHHHHHHHHTCSEEEEEEEECC----CC-TTCCCHHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred ceEEEeccCCCCchHHHHHHHHHHHHcCCCeEEEEECCCC----CC-CCCCCHHHHHHHHHHHHHhcCCCcceEEEechH
Confidence 468889999999999999999999986 66555444332 12 3357899999988764 22 122332 211
Q ss_pred C---CCHHHH-----H-HhcCCCEEEEcCCCC
Q psy11152 79 Y---VTTLET-----L-DAYDCDFCVHGALEV 101 (112)
Q Consensus 79 ~---~~~~~f-----i-~~l~~~~iv~G~D~~ 101 (112)
+ -.+.+- + +.+++.++++|.|..
T Consensus 268 ~m~~aGPreailhaiirkn~G~t~fIVGrDha 299 (396)
T 1jhd_A 268 DMLYAGPREAVLHAYFRQNMGATHFIIGRDHA 299 (396)
T ss_dssp CCCCCTHHHHHHHHHHHHHTTCSEEEECTTTT
T ss_pred HhhcCCchHHHHHHHHHHcCCCcEEEECCCCC
Confidence 1 123221 2 568999999999985
No 42
>1v47_A ATP sulfurylase; product binding complex, zinc, riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; HET: ADX; 2.49A {Thermus thermophilus} SCOP: b.122.1.3 c.26.1.5
Probab=98.30 E-value=2.8e-06 Score=65.40 Aligned_cols=90 Identities=14% Similarity=0.112 Sum_probs=61.8
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhc-cCC---CEEEE--cCCCC
Q psy11152 7 LATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGI-KWV---DEVVE--GAPYV 80 (112)
Q Consensus 7 ~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~-~~v---d~vi~--~~~~~ 80 (112)
+.|++.|+|||+|+||..+.++|.+..+.+++-....+ .| +-..+.+.|+++++.+ .+. +.+++ +.-++
T Consensus 156 ~~VvafqTrNPiHrgH~~l~~~ale~~d~vll~P~~g~----~K-~~d~~~~~R~~~~~~~i~~~~p~~~~~l~~~p~~m 230 (349)
T 1v47_A 156 RKVVAFQTRNAPHRAHEYLIRLGLELADGVLVHPILGA----KK-PDDFPTEVIVEAYQALIRDFLPQERVAFFGLATPM 230 (349)
T ss_dssp CSEEEEEESSCCCHHHHHHHHHHHHHSSEEEEEEBCSC----CC-TTSCCHHHHHHHHHHHHHHHSCGGGEEECCBCSCC
T ss_pred CeEEEeecCCCCchHHHHHHHHHHHhCCcEEEEECCCC----CC-CCCCCHHHHHHHHHHHHhhcCCCcceEEEechHHh
Confidence 56788999999999999999999998887666444332 12 3358899999988764 221 22443 22111
Q ss_pred ---CHHHH-----H-HhcCCCEEEEcCCCC
Q psy11152 81 ---TTLET-----L-DAYDCDFCVHGALEV 101 (112)
Q Consensus 81 ---~~~~f-----i-~~l~~~~iv~G~D~~ 101 (112)
.+.+- + +++++.++++|.|..
T Consensus 231 ~~aGPreailhaiirkn~G~t~fIVGrDha 260 (349)
T 1v47_A 231 RYAGPKEAVFHALVRKNFGATHFLVGRDHA 260 (349)
T ss_dssp CCCTHHHHHHHHHHHHHTTCSEEEECTTTT
T ss_pred hcCCcHHHHHHHHHHHcCCCcEEEECcCCC
Confidence 23221 2 568999999999975
No 43
>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: PAF; 1.58A {Yersinia pestis} SCOP: c.26.1.4 PDB: 3q10_A* 3mue_A 1iho_A 3guz_A*
Probab=98.03 E-value=9.2e-06 Score=61.07 Aligned_cols=66 Identities=20% Similarity=0.123 Sum_probs=50.3
Q ss_pred ceEEE--EecccCcCCHHHHHHHHHHHHcCCeEEEEEecCccc-ccCC--CCCCcCHHHHHHHHhhccCCCEEEE
Q psy11152 6 LLATS--LQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEI-SKHK--GPPVFTQQERYKMVRGIKWVDEVVE 75 (112)
Q Consensus 6 ~~~v~--~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~-~~~k--~~~i~s~~eR~~~l~~~~~vd~vi~ 75 (112)
+++++ |.|. +|-||+.|+++|++.++.+||+|.-+|.- .+.. ....-++++=.+++++. |||.|+.
T Consensus 25 ~~IgfVPTMG~---LH~GHlsLv~~Ar~~~d~vVVSIFVNP~QF~~~EDl~~YPRtle~D~~~l~~~-gvd~vF~ 95 (287)
T 3q12_A 25 KRIALVPTMGN---LHEGHMTLVDEAKTRADVVVVTIFVNPLQFERPDDLAHYPRTLQEDCEKLTRH-GADLVFA 95 (287)
T ss_dssp CCEEEEEECSS---CCHHHHHHHHHHHTTSSEEEEEECCCGGGCSSHHHHHHSCCCHHHHHHHHHHH-TCSEEEC
T ss_pred CeEEEEcCCCc---ccHHHHHHHHHHHHhCCEEEEEeccCcccCCCcchhhcCCCCHHHHHHHHHHC-CCCEEEC
Confidence 45667 8886 99999999999999999999999888842 1111 01345778788899999 8996664
No 44
>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3uy4_A*
Probab=97.91 E-value=6.1e-05 Score=56.56 Aligned_cols=60 Identities=18% Similarity=0.174 Sum_probs=46.8
Q ss_pred EecccCcCCHHHHHHHHHHHHcCCeEEEEEecCccc-ccCC--CCCCcCHHHHHHHHhhccCCCEEEE
Q psy11152 11 LQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEI-SKHK--GPPVFTQQERYKMVRGIKWVDEVVE 75 (112)
Q Consensus 11 ~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~-~~~k--~~~i~s~~eR~~~l~~~~~vd~vi~ 75 (112)
|+|. +|-||+.|+++|++ ++.+||+|.-+|.- .+.. ....-++++=.+++++. |||.|+.
T Consensus 32 TMGa---LH~GHlsLv~~Ar~-~d~VVVSIFVNP~QF~~~EDl~~YPRtle~D~~ll~~~-gvD~vF~ 94 (285)
T 3mxt_A 32 TMGF---LHDGHLSLVKHAKT-QDKVIVSIFVNPMQFGPNEDFSSYPRDLERDIKMCQDN-GVDMVFI 94 (285)
T ss_dssp ECSS---CCHHHHHHHHHHTT-SSEEEEEECCCGGGCCTTSCTTTSCCCHHHHHHHHHHT-TCSEEEC
T ss_pred CCCc---ccHHHHHHHHHHHh-CCEEEEEeccCccccCCchhhhcCCCCHHHHHHHHHHC-CCCEEEC
Confidence 6664 99999999999999 99999999888852 2221 12466788888999999 8997664
No 45
>3n8h_A Pantothenate synthetase; alpha-beta sandwich, ligase, structural genomics, structural of infectious diseases; HET: MSE AMP GOL; 2.00A {Francisella tularensis subsp} PDB: 3qtt_A*
Probab=97.53 E-value=0.00023 Score=52.83 Aligned_cols=62 Identities=15% Similarity=0.238 Sum_probs=46.7
Q ss_pred cccCcCCHHHHHHHHHHHHcCCeEEEEEecCccc-ccCC--CCCCcCHHHHHHHHhhccCCCEEEE
Q psy11152 13 SNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEI-SKHK--GPPVFTQQERYKMVRGIKWVDEVVE 75 (112)
Q Consensus 13 G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~-~~~k--~~~i~s~~eR~~~l~~~~~vd~vi~ 75 (112)
-|-=.+|-||+.|+++|++.++.++|++.-+|.- .+.. ....-++++=.+++++. |||.|+.
T Consensus 30 PTMGaLH~GHlsLv~~Ar~~~d~vVVSIFVNP~QF~~~EDl~~YPRtle~D~~ll~~~-gvD~vF~ 94 (264)
T 3n8h_A 30 PTMGALHNGHISLIKKAKSENDVVIVSIFVNPTQFNNPNDYQTYPNQLQQDIQILASL-DVDVLFN 94 (264)
T ss_dssp EECSSCCHHHHHHHHHHHHHCSEEEEEECCCGGGCSCHHHHHHSCCCHHHHHHHHHHT-TCSEEEC
T ss_pred CCCcchhHHHHHHHHHHHHhCCEEEEEEccCcccCCCcchhhcCCCCHHHHHHHHHHC-CCCEEEC
Confidence 3555899999999999999999999999888742 1111 01345677778899999 8996664
No 46
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.81 E-value=0.015 Score=46.81 Aligned_cols=92 Identities=14% Similarity=0.102 Sum_probs=59.7
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHH-cCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhc-c---CCCEEEE-cCCC-
Q psy11152 7 LATSLQSNYDMVHFGHANNLRQAKE-LGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGI-K---WVDEVVE-GAPY- 79 (112)
Q Consensus 7 ~~v~~~G~FD~~H~GH~~ll~~a~~-~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~-~---~vd~vi~-~~~~- 79 (112)
+.|++.=++.|+|+||..++++|.+ .++.|+|-+...+ .| +--.+.+-|++.++.+ . --+.+++ ..+.
T Consensus 164 ~~v~afqtrnP~Hr~H~~l~~~a~~~~~~~llv~p~~g~----~k-~~di~~~~R~~~~~~~~~~~~p~~~v~~~~~p~~ 238 (546)
T 2gks_A 164 DKIVAFQTRNPMHRVHEELTKRAMEKVGGGLLLHPVVGL----TK-PGDVDVYTRMRIYKVLYEKYYDKKKTILAFLPLA 238 (546)
T ss_dssp SCEEEECCSSCCCHHHHHHHHHHHHHHTSEEEECCBCSB----CC-TTSCCHHHHHHHHHHHHHHHSCTTTEEECBBCCB
T ss_pred CcEEEEecCCCCcHHHHHHHHHHHHhcCCcEEEEeCcCC----CC-CCCCCHHHHHHHHHHHHHhcCCCCcEEEeecCch
Confidence 4678888999999999999999886 5776655322211 11 2246889999988766 1 1133443 2221
Q ss_pred ---CCHHHH-----H-HhcCCCEEEEcCCCCCC
Q psy11152 80 ---VTTLET-----L-DAYDCDFCVHGALEVLV 103 (112)
Q Consensus 80 ---~~~~~f-----i-~~l~~~~iv~G~D~~f~ 103 (112)
-.|.+- + ++++|..+++|.|+.-.
T Consensus 239 m~~agprea~~ha~ir~n~G~th~ivgrdhag~ 271 (546)
T 2gks_A 239 MRMAGPREALWHGIIRRNYGATHFIVGRDHASP 271 (546)
T ss_dssp CCCCTHHHHHHHHHHHHHTTCSEEEECTTTTCC
T ss_pred hhccCchHHHHHHHHHHhCCCCeEEECCCCCCC
Confidence 234432 2 67999999999887543
No 47
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.96 E-value=0.048 Score=44.12 Aligned_cols=92 Identities=10% Similarity=-0.018 Sum_probs=58.5
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHc-CCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhc--cC-CCEEEE-cCCC--
Q psy11152 7 LATSLQSNYDMVHFGHANNLRQAKEL-GNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGI--KW-VDEVVE-GAPY-- 79 (112)
Q Consensus 7 ~~v~~~G~FD~~H~GH~~ll~~a~~~-~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~--~~-vd~vi~-~~~~-- 79 (112)
+.|++.=+++|+|+||..++++|.+. ++.++|-....+ .| +--.+.+-|++.++.+ .+ -+.+++ ..+.
T Consensus 191 ~~v~afqtrnP~Hr~H~~l~~~a~~~~~~~llv~pl~g~----~k-~~di~~~~R~~~~~~~~~~~p~~~v~l~~~p~~m 265 (573)
T 1m8p_A 191 SRVVAFQTRNPMHRAHRELTVRAARSRQANVLIHPVVGL----TK-PGDIDHFTRVRAYQALLPRYPNGMAVLGLLGLAM 265 (573)
T ss_dssp CSEEEECCSSCCCHHHHHHHHHHHHHTTCEEEECCBCCC----CC-TTCHHHHHHHHHHHHHGGGSSTTSEEECBBCCCC
T ss_pred CeEEEEeeCCCcchhhHHHHHHHHHhcCCcEEEEeCCCC----CC-CCCCCHHHHHHHHHHHHHhCCCCcEEEEecCchh
Confidence 46777889999999999999998866 776555321111 11 2236789999988775 11 233444 2221
Q ss_pred --CCHHH------HHHhcCCCEEEEcCCCCCC
Q psy11152 80 --VTTLE------TLDAYDCDFCVHGALEVLV 103 (112)
Q Consensus 80 --~~~~~------fi~~l~~~~iv~G~D~~f~ 103 (112)
-.|.| +-++++|..+++|.|+.-.
T Consensus 266 ~~agprea~~ha~ir~n~G~th~ivgrdhag~ 297 (573)
T 1m8p_A 266 RMGGPREAIWHAIIRKNHGATHFIVGRDHAGP 297 (573)
T ss_dssp CCCHHHHHHHHHHHHHHHTCSEEEECTTTTCC
T ss_pred hccCchHHHHHHHHHHHCCCCeEEECCCCCCC
Confidence 12443 2267999999999886533
No 48
>1r6x_A ATP:sulfate adenylyltransferase; APS kinase-like domain; 1.40A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5
Probab=95.93 E-value=0.099 Score=40.74 Aligned_cols=92 Identities=13% Similarity=0.115 Sum_probs=56.2
Q ss_pred eEEEEecccCcCCHHHHHHHHHH-HHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhcc--C-CCEEEE--cCCCC
Q psy11152 7 LATSLQSNYDMVHFGHANNLRQA-KELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIK--W-VDEVVE--GAPYV 80 (112)
Q Consensus 7 ~~v~~~G~FD~~H~GH~~ll~~a-~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~~--~-vd~vi~--~~~~~ 80 (112)
+.|++..+.+++|+||.+++.++ .+.++.+++ ++ ..-..| +--.+.+-|.+..+.+- + -+.+++ +...+
T Consensus 188 ~~VvafqtrNP~HraH~e~~~r~a~e~~~~lll--hP--lvG~tK-~~Dip~~vR~~~~~~~l~~yp~~~v~l~~~p~~m 262 (395)
T 1r6x_A 188 DRVVAFQTRNPMHRAHRELTVRAAREANAKVLI--HP--VVGLTK-PGDIDHHTRVRVYQEIIKRYPNGIAFLSLLPLAM 262 (395)
T ss_dssp CCEEEECCSSCCCHHHHHHHHHHHHHTTCEEEE--CC--BCSBCC-TTCCCHHHHHHHHHHHGGGSSTTCEEECCBCCBC
T ss_pred CcEEEeccCCCcchhhHHHHHHHHHHcCCcEEE--EE--CCCCCC-CCCCCHHHHHHHHHHHHHhCCCccEEEEecchhh
Confidence 47888999999999997666654 454554443 22 111111 12368899998777651 1 233443 32111
Q ss_pred ---CHHHH-----H-HhcCCCEEEEcCCCCCC
Q psy11152 81 ---TTLET-----L-DAYDCDFCVHGALEVLV 103 (112)
Q Consensus 81 ---~~~~f-----i-~~l~~~~iv~G~D~~f~ 103 (112)
.|.|- + ++++|..+++|.|..-.
T Consensus 263 ryAGPrEai~HAiiRkN~GcthfIVGRDhAG~ 294 (395)
T 1r6x_A 263 RMSGDREAVWHAIIRKNYGASHFIVGRDHAGP 294 (395)
T ss_dssp CCCHHHHHHHHHHHHHHTTCSEEEECTTTTCC
T ss_pred hhcCcHHHHHHHHHHHHcCCceEEECCCCCCC
Confidence 23332 2 67999999999998753
No 49
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.71 E-value=0.095 Score=41.98 Aligned_cols=91 Identities=12% Similarity=0.074 Sum_probs=56.6
Q ss_pred eEEEEecccCcCCHHHHHHHHH-HHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhcc--C-CCEEEE--cCCCC
Q psy11152 7 LATSLQSNYDMVHFGHANNLRQ-AKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIK--W-VDEVVE--GAPYV 80 (112)
Q Consensus 7 ~~v~~~G~FD~~H~GH~~ll~~-a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~~--~-vd~vi~--~~~~~ 80 (112)
+.|++..+++|+|+||.+++.+ |.+.++.+++-..--+ .| +--.+.+-|.+..+.+- + -+.+++ +.-.+
T Consensus 189 ~~v~afqtrnP~HraH~e~~~~~a~e~~~~lll~pl~g~----~k-~~di~~~~r~~~~~~~~~~yp~~~~~l~~~p~~m 263 (511)
T 1g8f_A 189 DRVVAFQTRNPMHRAHRELTVRAAREANAKVLIHPVVGL----TK-PGDIDHHTRVRVYQEIIKRYPNGIAFLSLLPLAM 263 (511)
T ss_dssp CCEEEEEESSCCCHHHHHHHHHHHHHHTCEEEEEEBCSB----CS-TTCCCHHHHHHHHHHHGGGSCTTSEEECCBCCBC
T ss_pred CcEEEEecCCCCchHHHHHHHHHHHHcCCcEEEEECCCC----CC-CCCCCHHHHHHHHHHHHHhCCcccEEEEecchhh
Confidence 4688899999999999666655 5555665544332221 11 12368899999877651 1 233443 32111
Q ss_pred ---CHHHH-----H-HhcCCCEEEEcCCCCC
Q psy11152 81 ---TTLET-----L-DAYDCDFCVHGALEVL 102 (112)
Q Consensus 81 ---~~~~f-----i-~~l~~~~iv~G~D~~f 102 (112)
.|.|- + ++++|..+++|.|..-
T Consensus 264 ~yaGprea~~hai~r~n~G~th~IvGrdhAg 294 (511)
T 1g8f_A 264 RMSGDREAVWHAIIRKNYGASHFIVGRDHAG 294 (511)
T ss_dssp CCCHHHHHHHHHHHHHHTTCSEEECCTTTTC
T ss_pred hccCcHHHHHHHHHHHhCCCceEEeCCCCCC
Confidence 23332 2 6799999999999875
No 50
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.83 E-value=0.64 Score=37.45 Aligned_cols=91 Identities=8% Similarity=0.028 Sum_probs=52.4
Q ss_pred eEEEEecccCcCCHHHHHHHHHHH-HcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhcc--C-CCEEEE--cCCC-
Q psy11152 7 LATSLQSNYDMVHFGHANNLRQAK-ELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIK--W-VDEVVE--GAPY- 79 (112)
Q Consensus 7 ~~v~~~G~FD~~H~GH~~ll~~a~-~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~~--~-vd~vi~--~~~~- 79 (112)
+.|++.=+-+|+|+||.+++++|. +.++.+++ + |.+-..| +-=.+.+-|.+..+.+- + -+.+++ +.-.
T Consensus 164 ~~v~afqtrnp~Hrah~~~~~~~~~~~~~~lll--~--pl~g~~k-~~d~~~~~r~~~~~~~~~~~p~~~~~l~~~p~~m 238 (552)
T 3cr8_A 164 RRIIAWQARQPMHRAQYEFCLKSAIENEANLLL--H--PQVGGDI-TEAPAYFGLVRSFLAIRDRFPAATTQLSLLPAPP 238 (552)
T ss_dssp CSEEEECCSSCCCHHHHHHHHHHHHHTTCEEEE--C--CBCCCCT-TTCTTHHHHHHHHHHHGGGSCGGGEEECBBCSCC
T ss_pred CceEEEecCCCCchHHHHHHHHHHHhcCCeEEE--E--eccCCCC-CCCCCHHHHHHHHHHHHHhCCCccEEEeecchhh
Confidence 467777899999999999999988 55664443 2 2221111 12467888888777651 1 223442 2111
Q ss_pred --CCHHHH-----H-HhcCCCEEEEcCCCCC
Q psy11152 80 --VTTLET-----L-DAYDCDFCVHGALEVL 102 (112)
Q Consensus 80 --~~~~~f-----i-~~l~~~~iv~G~D~~f 102 (112)
-.|.|- + ++++|..+++|.|+.-
T Consensus 239 ~~agprea~~ha~~r~n~G~th~ivGrdhag 269 (552)
T 3cr8_A 239 PEASGRALLLRAIVARNFGCSLLIAGGEHQP 269 (552)
T ss_dssp CCSCSHHHHHHHHHHHHHTCSEEEC------
T ss_pred cccCcHHHHHHHHHHHhCCCCeeeeCCCCCC
Confidence 123332 2 6799999999999864
No 51
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=92.53 E-value=0.74 Score=37.80 Aligned_cols=95 Identities=17% Similarity=0.013 Sum_probs=58.5
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHc-CC----eEEEEEecCcccccCCCCCCcCHHHHHHHHhhc-c--C--CCEEEE-
Q psy11152 7 LATSLQSNYDMVHFGHANNLRQAKEL-GN----YLVVGVHTDEEISKHKGPPVFTQQERYKMVRGI-K--W--VDEVVE- 75 (112)
Q Consensus 7 ~~v~~~G~FD~~H~GH~~ll~~a~~~-~~----~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~-~--~--vd~vi~- 75 (112)
++|++.=+-+|+|+||..|++.|.+. ++ .-.+.+++ .+-..| +-=.+.+-|.+..+.+ . + -+.+++
T Consensus 413 ~~VvafqtrNP~HraHe~l~~~a~~~~~d~g~~~~~lll~p--l~G~tk-~~di~~~~r~~~~~~~~~~~y~p~~~~~l~ 489 (630)
T 1x6v_B 413 DAVSAFQLRNPVHNGHALLMQDTHKQLLERGYRRPVLLLHP--LGGWTK-DDDVPLMWRMKQHAAVLEEGVLNPETTVVA 489 (630)
T ss_dssp SEEEEEEESSCCCHHHHHHHHHHHHHHHHHTCSSEEEEEEE--BCSCCC-TTSCCHHHHHHHHHHHHHTTSSCGGGEEEC
T ss_pred CeEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCcEEEEe--CcCCCC-CCCCCHHHHHHHHHHHHHcCCCCCcceEEe
Confidence 46777889999999999999998863 33 11222332 111111 2246788898877655 1 1 134554
Q ss_pred -cCCCC---CHHHH-----H-HhcCCCEEEEcCCCCCCc
Q psy11152 76 -GAPYV---TTLET-----L-DAYDCDFCVHGALEVLVS 104 (112)
Q Consensus 76 -~~~~~---~~~~f-----i-~~l~~~~iv~G~D~~f~~ 104 (112)
+...+ .|.|- + ++++|..+|+|.|+.-..
T Consensus 490 ~~p~~mryaGPrEa~~hai~rkN~Gcth~IVGrdhAG~g 528 (630)
T 1x6v_B 490 IFPSPMMYAGPTEVQWHCRARMVAGANFYIVGRDPAGMP 528 (630)
T ss_dssp CBCCCCCCCHHHHHHHHHHHHHHTTCSEEEECSSTTCCB
T ss_pred eccchhhhcCcHHHHHHHHHHHhCCCCeEEECCCCCCCC
Confidence 32111 24442 2 679999999999987554
No 52
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=51.77 E-value=60 Score=24.16 Aligned_cols=33 Identities=18% Similarity=0.076 Sum_probs=22.9
Q ss_pred CCCCCceEEEEecccCcCCHHHHHHHHHHHHcCCeEEE
Q psy11152 1 METLNLLATSLQSNYDMVHFGHANNLRQAKELGNYLVV 38 (112)
Q Consensus 1 ~~~~~~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv 38 (112)
|+.++++.++..|.- .+..+++.|++++=++++
T Consensus 1 M~~~~k~l~Il~~~~-----~~~~i~~aa~~lG~~vv~ 33 (425)
T 3vot_A 1 MTKRNKNLAIICQNK-----HLPFIFEEAERLGLKVTF 33 (425)
T ss_dssp -CCCCCEEEEECCCT-----TCCHHHHHHHHTTCEEEE
T ss_pred CCCCCcEEEEECCCh-----hHHHHHHHHHHCCCEEEE
Confidence 787887777777663 345788999998866443
No 53
>1ex2_A Protein MAF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: SUC PO4; 1.85A {Bacillus subtilis} SCOP: c.51.4.2 PDB: 1exc_A*
Probab=38.34 E-value=37 Score=23.38 Aligned_cols=41 Identities=15% Similarity=0.041 Sum_probs=25.2
Q ss_pred HHHHHHHhhccCCCEEEE---cCCC----CCHHHHH------------HhcCCCEEEEcCCC
Q psy11152 58 QERYKMVRGIKWVDEVVE---GAPY----VTTLETL------------DAYDCDFCVHGALE 100 (112)
Q Consensus 58 ~eR~~~l~~~~~vd~vi~---~~~~----~~~~~fi------------~~l~~~~iv~G~D~ 100 (112)
.-|.++|+++ |++..+. +|+. .+|.+++ .++.++ +|+|.|-
T Consensus 12 PrR~eLL~~~-gi~f~v~~~~iDE~~~~~~~p~~~v~~lA~~KA~av~~~~~~~-~VigaDT 71 (189)
T 1ex2_A 12 PRRKELLDLL-QLPYSIIVSEVEEKLNRNFSPEENVQWLAKQKAKAVADLHPHA-IVIGADT 71 (189)
T ss_dssp HHHHHHHHTT-CCCCEECCCCCCCCCCTTSCHHHHHHHHHHHHHHHHHHHCTTS-EEEEEEE
T ss_pred HHHHHHHHhC-CCCeEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCC-eEEEeCe
Confidence 5678899999 7876554 3322 3566664 233455 7777764
No 54
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=29.21 E-value=70 Score=24.10 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=20.5
Q ss_pred EEEecccCc---CCHHHHHHHHHHHHc---CCeEEEEEec
Q psy11152 9 TSLQSNYDM---VHFGHANNLRQAKEL---GNYLVVGVHT 42 (112)
Q Consensus 9 v~~~G~FD~---~H~GH~~ll~~a~~~---~~~lvv~v~~ 42 (112)
.+..| ||| +|+||.--|...+.+ +-.+++.+..
T Consensus 37 ~iy~G-~~PTg~lHlG~l~~l~~~~~lQ~~G~~~~~~iaD 75 (364)
T 2cya_A 37 KGYIG-YEPSGVAHIGWLVWMYKVKDLVEAGVDFSVLEAT 75 (364)
T ss_dssp EEEEE-ECCCSSCBTHHHHHHHHHHHHHHTTCEEEEEECH
T ss_pred EEEec-cCCCCCccHhHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 34444 565 899997777776654 3445555543
No 55
>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}
Probab=28.39 E-value=65 Score=20.17 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=26.1
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCccc
Q psy11152 8 ATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEI 46 (112)
Q Consensus 8 ~v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~~ 46 (112)
.++++|.|+...-.....+.++.+.-+.+.++.++++.+
T Consensus 40 ~v~VVGfF~~~~~~~~~~F~~~A~~~~d~~F~~t~~~~v 78 (124)
T 2l4c_A 40 EVAVIGFFQDLEIPAVPILHSMVQKFPGVSFGISTDSEV 78 (124)
T ss_dssp SEEEEEECSCTTSTHHHHHHHHHHHCTTSEEEEECCHHH
T ss_pred CCEEEEEECCCCChhHHHHHHHHHhCCCceEEEEChHHH
Confidence 467889998877666666665554446677777776543
No 56
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=27.61 E-value=1.5e+02 Score=20.39 Aligned_cols=69 Identities=22% Similarity=0.109 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHcC----CeEE-EEEecCcccccCCCCCCcCHHHHHHHHhhccCCCEEEEcC-CC---CCHHH----
Q psy11152 18 VHFGHANNLRQAKELG----NYLV-VGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVVEGA-PY---VTTLE---- 84 (112)
Q Consensus 18 ~H~GH~~ll~~a~~~~----~~lv-v~v~~d~~~~~~k~~~i~s~~eR~~~l~~~~~vd~vi~~~-~~---~~~~~---- 84 (112)
++.--.++|..|++++ ..+. +.+.++ . . .. .+-+.++ |+|.++..+ +. ..++.
T Consensus 17 l~~~s~ell~~A~~La~~~g~~v~av~~G~~--~---~-----~~---~~~~~~~-Gad~v~~v~~~~~~~~~~~~~a~~ 82 (217)
T 3ih5_A 17 VADVSLELLTKGRSLANELNCQLEAVVAGTG--L---K-----EI---EKQILPY-GVDKLHVFDAEGLYPYTSLPHTSI 82 (217)
T ss_dssp ECHHHHHHHHHHHHHHHHHTCCEEEEEEESC--C---T-----TT---HHHHGGG-TCSEEEEEECGGGSSCCHHHHHHH
T ss_pred ECHHHHHHHHHHHHHHHhcCCeEEEEEECCC--H---H-----HH---HHHHHhc-CCCEEEEecCcccccCCHHHHHHH
Confidence 4555689999999874 3333 333221 1 0 01 2334467 899988732 21 13333
Q ss_pred ---HHHhcCCCEEEEcCCC
Q psy11152 85 ---TLDAYDCDFCVHGALE 100 (112)
Q Consensus 85 ---fi~~l~~~~iv~G~D~ 100 (112)
.+++++++.|++|...
T Consensus 83 l~~~i~~~~p~~Vl~g~t~ 101 (217)
T 3ih5_A 83 LVNLFKEEQPQICLMGATV 101 (217)
T ss_dssp HHHHHHHHCCSEEEEECSH
T ss_pred HHHHHHhcCCCEEEEeCCc
Confidence 3578899999999754
No 57
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=24.99 E-value=63 Score=23.76 Aligned_cols=28 Identities=18% Similarity=0.498 Sum_probs=18.2
Q ss_pred cCc---CCHHHHHHHHHHHHc---CCeEEEEEec
Q psy11152 15 YDM---VHFGHANNLRQAKEL---GNYLVVGVHT 42 (112)
Q Consensus 15 FD~---~H~GH~~ll~~a~~~---~~~lvv~v~~ 42 (112)
||| +|+||.-.|...+.+ +-..++.+..
T Consensus 35 ~~PTg~lHlGhl~~l~~~~~lQ~~g~~~~~~i~D 68 (314)
T 2zp1_A 35 FEPSGKIHLGHYLQIKKMIDLQNAGFDIIILLAD 68 (314)
T ss_dssp ECCCSSCBHHHHHHHHHHHHHHHTTEEEEEEECH
T ss_pred cCCCCCcchhhHHHHHHHHHHHHCCCCEEEEEec
Confidence 555 999997777766654 2345555544
No 58
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=24.75 E-value=50 Score=25.53 Aligned_cols=9 Identities=56% Similarity=0.966 Sum_probs=8.0
Q ss_pred CcCCHHHHH
Q psy11152 16 DMVHFGHAN 24 (112)
Q Consensus 16 D~~H~GH~~ 24 (112)
+.+|+||..
T Consensus 18 g~lHiGH~~ 26 (497)
T 2csx_A 18 DVPHLGHAY 26 (497)
T ss_dssp SCCCHHHHH
T ss_pred CccchhhHH
Confidence 899999974
No 59
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Probab=24.72 E-value=2.1e+02 Score=21.00 Aligned_cols=71 Identities=14% Similarity=0.117 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHHHcCCeEEEEEecCcccccCCCCCCcCHHHHHHHHhhccCCCEEEEc-CCC---CCHHH-------HH
Q psy11152 18 VHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVVEG-APY---VTTLE-------TL 86 (112)
Q Consensus 18 ~H~GH~~ll~~a~~~~~~lvv~v~~d~~~~~~k~~~i~s~~eR~~~l~~~~~vd~vi~~-~~~---~~~~~-------fi 86 (112)
++.--.++|..|+++++++.+.+.-. . ....-| +.+..+ |+|.++.. ++. ..++. .+
T Consensus 15 l~~~~~eal~aA~~La~~V~av~~G~---------~-~~~~~~-~a~~a~-GaDkv~~v~d~~l~~~~~~~~a~~La~li 82 (315)
T 1efv_A 15 LAPITLNTITAATRLGGEVSCLVAGT---------K-CDKVAQ-DLCKVA-GIAKVLVAQHDVYKGLLPEELTPLILATQ 82 (315)
T ss_dssp ECTHHHHHHHHHHTTTSEEEEEEEES---------C-CHHHHH-HHHHST-TCCEEEEEECGGGTTCCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcEEEEEECC---------c-hHHHHH-HHHHhc-CCCEEEEecCchhccCCHHHHHHHHHHHH
Confidence 34556789999999987654332211 1 111222 222456 89998873 221 12333 24
Q ss_pred HhcCCCEEEEcCCC
Q psy11152 87 DAYDCDFCVHGALE 100 (112)
Q Consensus 87 ~~l~~~~iv~G~D~ 100 (112)
++.+++.|++|...
T Consensus 83 ~~~~pdlVL~g~ts 96 (315)
T 1efv_A 83 KQFNYTHICAGASA 96 (315)
T ss_dssp HHHCCSEEEEESSH
T ss_pred HhcCCCEEEEcCCC
Confidence 67899999999854
No 60
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=24.28 E-value=2.3e+02 Score=21.44 Aligned_cols=66 Identities=15% Similarity=0.018 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCCeEEE-EEecCcccccCCCCCCcCHHHH--HHHHhhccCCCEEEEcCCCCCHHHHHHhcCCCEEEEcCC
Q psy11152 23 ANNLRQAKELGNYLVV-GVHTDEEISKHKGPPVFTQQER--YKMVRGIKWVDEVVEGAPYVTTLETLDAYDCDFCVHGAL 99 (112)
Q Consensus 23 ~~ll~~a~~~~~~lvv-~v~~d~~~~~~k~~~i~s~~eR--~~~l~~~~~vd~vi~~~~~~~~~~fi~~l~~~~iv~G~D 99 (112)
+.+|+.|.+.++..-| ..-+.|. ..-.| ...|.+. ||+..++-|. ....++++-++|.+++|.|
T Consensus 195 l~~l~~A~~~gk~~~V~v~EtRP~----------~qG~rltA~eL~~~-GIpvtlI~Ds--a~~~~M~~~~Vd~ViVGAD 261 (374)
T 2yvk_A 195 LAPFYLAKQKDLGLHIYACETRPV----------LQGSRLTAWELMQG-GIDVTLITDS--MAAHTMKEKQISAVIVGAD 261 (374)
T ss_dssp THHHHHHHHTTCCCEEEEECCTTT----------THHHHTHHHHHHTT-TCEEEEECGG--GHHHHHHHTTCCEEEECCS
T ss_pred HHHHHHHHHcCCEEEEEEeCCCCc----------cccHHHHHHHHHHc-CCCEEEEehh--HHHHHhhhcCCCEEEECcc
Confidence 4678888888754333 3323331 12333 2334455 6776665542 2333456566777777777
Q ss_pred CC
Q psy11152 100 EV 101 (112)
Q Consensus 100 ~~ 101 (112)
--
T Consensus 262 ~V 263 (374)
T 2yvk_A 262 RI 263 (374)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 61
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=23.03 E-value=2.4e+02 Score=21.13 Aligned_cols=67 Identities=18% Similarity=0.068 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCCeEEE-EEecCcccccCCCCCCcCHHHH--HHHHhhccCCCEEEEcCCCCCHHHHHHhcCCCEEEEcCC
Q psy11152 23 ANNLRQAKELGNYLVV-GVHTDEEISKHKGPPVFTQQER--YKMVRGIKWVDEVVEGAPYVTTLETLDAYDCDFCVHGAL 99 (112)
Q Consensus 23 ~~ll~~a~~~~~~lvv-~v~~d~~~~~~k~~~i~s~~eR--~~~l~~~~~vd~vi~~~~~~~~~~fi~~l~~~~iv~G~D 99 (112)
+.+|+.|.+.++..-| ..-+.|. ..-.| ...|.+. ||+..++-|. ....++++-++|.+++|.|
T Consensus 168 l~~l~~A~~~gk~~~V~v~EtRP~----------~qG~rlta~eL~~~-GI~vtlI~Ds--a~~~~M~~~~Vd~VivGAd 234 (351)
T 1t5o_A 168 LGVVRSAVEQGKEIRVIACETRPL----------NQGSRLTCWELMED-GIDVTLITDS--MVGIVMQKGMVDKVIVGAD 234 (351)
T ss_dssp HHHHHHHHHTTCCCEEEEECCTTT----------THHHHTHHHHHHHT-TCCEEEECGG--GHHHHHHTTCCSEEEECCS
T ss_pred HHHHHHHHHCCCEEEEEEeCCCcc----------cccHHHHHHHHHhC-CCCEEEEehh--HHHHHhhcCCCCEEEECcc
Confidence 4678888887754333 3323321 12333 2345555 6877776542 2333456667888888877
Q ss_pred CCC
Q psy11152 100 EVL 102 (112)
Q Consensus 100 ~~f 102 (112)
--.
T Consensus 235 ~V~ 237 (351)
T 1t5o_A 235 RIV 237 (351)
T ss_dssp EEE
T ss_pred chh
Confidence 543
No 62
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=22.20 E-value=2.6e+02 Score=21.24 Aligned_cols=67 Identities=16% Similarity=-0.079 Sum_probs=36.0
Q ss_pred HHHHHHHHHcCCeEEEEEe-cCcccccCCCCCCcCHHHH--HHHHhhccCCCEEEEcCCCCCHHHHHHhcCCCEEEEcCC
Q psy11152 23 ANNLRQAKELGNYLVVGVH-TDEEISKHKGPPVFTQQER--YKMVRGIKWVDEVVEGAPYVTTLETLDAYDCDFCVHGAL 99 (112)
Q Consensus 23 ~~ll~~a~~~~~~lvv~v~-~d~~~~~~k~~~i~s~~eR--~~~l~~~~~vd~vi~~~~~~~~~~fi~~l~~~~iv~G~D 99 (112)
+.+|+.|.+.+...-|-+. +.|. ..-.| ...|.+. ||+..++-|. ....++++-++|.+++|.|
T Consensus 199 l~~l~~A~~~gk~~~V~v~EtRP~----------~qGarltA~eL~~~-GIpvtlI~Ds--a~~~~M~~~~Vd~ViVGAD 265 (383)
T 2a0u_A 199 LGVVRQLFYDGKLERVYACETRPW----------NQGARLTVYECVQE-DIPCTLICDG--AASSLMLNRKIDAVVVGAD 265 (383)
T ss_dssp HHHHHHHHHTTCEEEEEEECCTTT----------THHHHTHHHHHHHT-TCCEEEECGG--GHHHHHHHSCCCEEEECCS
T ss_pred HHHHHHHHHcCCeEEEEEeCCCCc----------cchHHHHHHHHHHc-CCCEEEEehh--HHHHHhhcCCCCEEEECcc
Confidence 5788899888765433332 2331 12333 2334444 6776665542 2333445556777777776
Q ss_pred CCC
Q psy11152 100 EVL 102 (112)
Q Consensus 100 ~~f 102 (112)
--.
T Consensus 266 ~V~ 268 (383)
T 2a0u_A 266 RIC 268 (383)
T ss_dssp EEC
T ss_pred EEe
Confidence 443
No 63
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=21.92 E-value=1.9e+02 Score=19.59 Aligned_cols=60 Identities=13% Similarity=0.124 Sum_probs=32.3
Q ss_pred cCcCCHHHHHH-----HHHHHHcCCeEEEEEecCc-cc--ccCCCCCCcCHHHHHHHHhhccCCCEEEE
Q psy11152 15 YDMVHFGHANN-----LRQAKELGNYLVVGVHTDE-EI--SKHKGPPVFTQQERYKMVRGIKWVDEVVE 75 (112)
Q Consensus 15 FD~~H~GH~~l-----l~~a~~~~~~lvv~v~~d~-~~--~~~k~~~i~s~~eR~~~l~~~~~vd~vi~ 75 (112)
-|++|.|-..+ ++++.+.++.+++++.... .+ ..+....-.+..|+.+.++++ |++.++.
T Consensus 96 ad~V~lg~~~l~~p~~~~~~~~~g~~i~~~~d~~~~~v~~~g~~~~~~~~~~e~~~~~~~~-G~~~i~~ 163 (241)
T 1qo2_A 96 YRRQIVSSKVLEDPSFLKSLREIDVEPVFSLDTRGGRVAFKGWLAEEEIDPVSLLKRLKEY-GLEEIVH 163 (241)
T ss_dssp CCEEEECHHHHHCTTHHHHHHTTTCEEEEEEEEETTEECCTTCSSCSCCCHHHHHHHHHTT-TCCEEEE
T ss_pred CCEEEECchHhhChHHHHHHHHcCCcEEEEEEecCCEEEECCceecCCCCHHHHHHHHHhC-CCCEEEE
Confidence 46667765443 4555333445566665411 11 111111234677888778888 7888877
No 64
>2qlc_A DNA repair protein RADC homolog; MCSG, structural genomics, PSI-2, structure initiative; HET: DNA; 2.30A {Chlorobium tepidum tls}
Probab=21.90 E-value=92 Score=19.90 Aligned_cols=37 Identities=11% Similarity=0.010 Sum_probs=28.0
Q ss_pred EEEecccCcCCHHHHHHHHHHHHcCCeEEEEEecCcc
Q psy11152 9 TSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEE 45 (112)
Q Consensus 9 v~~~G~FD~~H~GH~~ll~~a~~~~~~lvv~v~~d~~ 45 (112)
.+..|+-|..-.==.++++.|.+....-++.+++.|+
T Consensus 43 ~l~~Gt~~~~~v~pRei~~~Al~~~A~~vIl~HNHPS 79 (126)
T 2qlc_A 43 TITIGTLTASLIHPREIFKAAIRESAHSIILVHNHPS 79 (126)
T ss_dssp EEEESSCCGGGCCHHHHHHHHHHTTCSEEEEEEECSS
T ss_pred EecCCCCCcEeecHHHHHHHHHHcCCcEEEEEecCCC
Confidence 5677888865444468999999986667888888875
No 65
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=21.31 E-value=2.6e+02 Score=20.89 Aligned_cols=66 Identities=20% Similarity=-0.016 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCeEEEEE-ecCcccccCCCCCCcCHHHH--HHHHhhccCCCEEEEcCCCCCHHHHHHhcCCCEEEEcCC
Q psy11152 23 ANNLRQAKELGNYLVVGV-HTDEEISKHKGPPVFTQQER--YKMVRGIKWVDEVVEGAPYVTTLETLDAYDCDFCVHGAL 99 (112)
Q Consensus 23 ~~ll~~a~~~~~~lvv~v-~~d~~~~~~k~~~i~s~~eR--~~~l~~~~~vd~vi~~~~~~~~~~fi~~l~~~~iv~G~D 99 (112)
+.+|+.|.+.++..-|-+ .+.|. ..-.| ...|.+. |++..++-|. ....++++-++|.+++|.|
T Consensus 170 l~~l~~A~~~gk~~~V~v~EtRP~----------~qG~rlta~eL~~~-GI~vtlI~Ds--a~~~~M~~~~Vd~VivGAd 236 (347)
T 1t9k_A 170 LGVIRAAVESGKRIRVFADETRPY----------LQGARLTAWELMKD-GIEVYVITDN--MAGWLMKRGLIDAVVVGAD 236 (347)
T ss_dssp HHHHHHHHHTTCCEEEEEECCTTT----------THHHHTHHHHHHTT-TCEEEEECGG--GHHHHHHTTCCSEEEECCS
T ss_pred HHHHHHHHHCCCeEEEEEeCCCCc----------cccHHHHHHHHHhC-CCCEEEEehh--HHHHHhhcCCCCEEEECcc
Confidence 367888888776543333 22321 12333 2334455 6766665542 2233445556777777776
Q ss_pred CC
Q psy11152 100 EV 101 (112)
Q Consensus 100 ~~ 101 (112)
--
T Consensus 237 ~V 238 (347)
T 1t9k_A 237 RI 238 (347)
T ss_dssp EE
T ss_pred EE
Confidence 54
Done!