RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11152
(112 letters)
>gnl|CDD|173925 cd02174, CCT, CTP:phosphocholine cytidylyltransferase.
CTP:phosphocholine cytidylyltransferase (CCT) catalyzes
the condensation of CTP and phosphocholine to form
CDP-choline as the rate-limiting and regulatory step in
the CDP-choline pathway. CCT is unique in that its
enzymatic activity is regulated by the extent of its
association with membrane structures. A current model
posts that the elastic stress of the bilayer curvature
is sensed by CCT and this governs the degree of
membrane association, thus providing a mechanism for
both positive and negative regulation of activity.
Length = 150
Score = 167 bits (426), Expect = 5e-55
Identities = 59/85 (69%), Positives = 69/85 (81%), Gaps = 2/85 (2%)
Query: 15 YDMVHFGHANNLRQAKELGN--YLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDE 72
+D+ H+GHAN LRQAK+LG YL+VGVH+DEEI KHKGPPV T++ERY+ VR KWVDE
Sbjct: 11 FDLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKGPPVMTEEERYEAVRHCKWVDE 70
Query: 73 VVEGAPYVTTLETLDAYDCDFCVHG 97
VVEGAPYVTT E LD Y CD+ HG
Sbjct: 71 VVEGAPYVTTPEFLDKYKCDYVAHG 95
>gnl|CDD|140329 PTZ00308, PTZ00308, ethanolamine-phosphate cytidylyltransferase;
Provisional.
Length = 353
Score = 149 bits (378), Expect = 2e-45
Identities = 53/83 (63%), Positives = 65/83 (78%)
Query: 15 YDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVV 74
+DM+HFGHAN LRQA+ LG+ L VG H+DEEI ++KGPPV Q+ERY+ +R KWVDEVV
Sbjct: 20 FDMLHFGHANALRQARALGDELFVGCHSDEEIMRNKGPPVMHQEERYEALRACKWVDEVV 79
Query: 75 EGAPYVTTLETLDAYDCDFCVHG 97
EG PY T LE L+ +CDF VHG
Sbjct: 80 EGYPYTTRLEDLERLECDFVVHG 102
Score = 84.5 bits (209), Expect = 9e-21
Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 2/99 (2%)
Query: 15 YDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGP--PVFTQQERYKMVRGIKWVDE 72
+D+ H GH L++A+ELG+YL+VGVH D+ +++ KG P+ ER V ++VDE
Sbjct: 201 FDLFHIGHIRVLQKARELGDYLIVGVHEDQVVNEQKGSNYPIMNLNERVLGVLSCRYVDE 260
Query: 73 VVEGAPYVTTLETLDAYDCDFCVHGALEVLVSLESSVSA 111
VV GAP+ T E +D+ + V G LV+ E
Sbjct: 261 VVIGAPFDVTKEVIDSLHINVVVGGKFSDLVNEEGGSDP 299
>gnl|CDD|223688 COG0615, TagD, Cytidylyltransferase [Cell envelope biogenesis,
outer membrane / Lipid metabolism].
Length = 140
Score = 117 bits (294), Expect = 5e-35
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 15 YDMVHFGHANNLRQAKELGNYL-VVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEV 73
+D++H GH LRQAK+LG+ L VV + I + K P+ +++R +++ +++VDEV
Sbjct: 10 FDILHPGHIEFLRQAKKLGDELIVVVARDETVIKRKKRKPIMPEEQRAEVLESLRYVDEV 69
Query: 74 VEGAPYVTTLETLDAYDCDFCVHG 97
+ GAP+ E ++ Y D V G
Sbjct: 70 ILGAPWDIKFEDIEEYKPDIVVLG 93
>gnl|CDD|173921 cd02170, cytidylyltransferase, cytidylyltransferase. The
cytidylyltransferase family includes cholinephosphate
cytidylyltransferase (CCT), glycerol-3-phosphate
cytidylyltransferase, RafE and phosphoethanolamine
cytidylyltransferase (ECT). All enzymes catalyze the
transfer of a cytidylyl group from CTP to various
substrates.
Length = 136
Score = 99.7 bits (249), Expect = 2e-28
Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 15 YDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVV 74
+D++H GH L +AK+LG+YL+VGV DE ++K K P+ +++R ++V +K+VDEV+
Sbjct: 10 FDIIHPGHIRFLEEAKKLGDYLIVGVARDETVAKIKRRPILPEEQRAEVVEALKYVDEVI 69
Query: 75 EGAPYVTTLETLDAYDCDFCVHG 97
G P+ + D V G
Sbjct: 70 LGHPWSYFKPLEELKP-DVIVLG 91
>gnl|CDD|215227 PLN02406, PLN02406, ethanolamine-phosphate cytidylyltransferase.
Length = 418
Score = 105 bits (264), Expect = 2e-28
Identities = 47/87 (54%), Positives = 61/87 (70%), Gaps = 4/87 (4%)
Query: 15 YDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVV 74
+DM+H+GHAN LRQA+ LG+ LVVGV +DEEI +KGPPV ER MV G+KWVDEV+
Sbjct: 62 FDMMHYGHANALRQARALGDELVVGVVSDEEIIANKGPPVTPMHERMIMVSGVKWVDEVI 121
Query: 75 EGAPYVTTLETL----DAYDCDFCVHG 97
APY T E + + Y+ D+ +HG
Sbjct: 122 PDAPYAITEEFMNKLFNEYNIDYIIHG 148
Score = 69.3 bits (169), Expect = 4e-15
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Query: 15 YDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGP--PVFTQQERYKMVRGIKWVDE 72
+D+ H GH LR A+ LG++L+VG+HTD+ +S H+G P+ ER V ++VDE
Sbjct: 260 FDLFHAGHVEILRLARALGDFLLVGIHTDQTVSAHRGAHRPIMNLHERSLSVLACRYVDE 319
Query: 73 VVEGAPYVTTLETLDAYDCDFCVHG 97
V+ GAP+ + + + ++ VHG
Sbjct: 320 VIIGAPWEVSKDMITTFNISLVVHG 344
>gnl|CDD|215229 PLN02413, PLN02413, choline-phosphate cytidylyltransferase.
Length = 294
Score = 96.2 bits (239), Expect = 2e-25
Identities = 44/87 (50%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Query: 15 YDMVHFGHANNLRQAKEL--GNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDE 72
YD+ HFGHA +L QAK+L YL+VG DE K+KG V T+ ERY+ +R KWVDE
Sbjct: 36 YDLFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYKGKTVMTEDERYESLRHCKWVDE 95
Query: 73 VVEGAPYVTTLETLDAYDCDFCVHGAL 99
V+ AP+V T E LD + D+ H AL
Sbjct: 96 VIPDAPWVITQEFLDKHRIDYVAHDAL 122
>gnl|CDD|173924 cd02173, ECT, CTP:phosphoethanolamine cytidylyltransferase (ECT).
CTP:phosphoethanolamine cytidylyltransferase (ECT)
catalyzes the conversion of phosphoethanolamine to
CDP-ethanolamine as part of the CDP-ethanolamine
biosynthesis pathway. ECT expression in hepatocytes is
localized predominantly to areas of the cytoplasm that
are rich in rough endoplasmic reticulum. Several ECTs,
including yeast and human ECT, have large repetitive
sequences located within their N- and C-termini.
Length = 152
Score = 86.9 bits (216), Expect = 4e-23
Identities = 39/90 (43%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
Query: 15 YDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGP--PVFTQQERYKMVRGIKWVDE 72
+D+ H GH L +A+ELG+YL+VGVH D+ ++++KG P+ ER V ++VDE
Sbjct: 11 FDLFHIGHIEFLEKARELGDYLIVGVHDDQTVNEYKGSNYPIMNLHERVLSVLACRYVDE 70
Query: 73 VVEGAPYVTTLETLDAYDCDFCVHGALEVL 102
VV GAPYV T E ++ + D VHG E
Sbjct: 71 VVIGAPYVITKELIEHFKIDVVVHGKTEET 100
>gnl|CDD|232837 TIGR00125, cyt_tran_rel, cytidyltransferase-like domain. Protein
families that contain at least one copy of this domain
include citrate lyase ligase, pantoate-beta-alanine
ligase, glycerol-3-phosphate cytidyltransferase,
ADP-heptose synthase, phosphocholine
cytidylyltransferase, lipopolysaccharide core
biosynthesis protein KdtB, the bifunctional protein
NadR, and a number whose function is unknown. Many of
these proteins are known to use CTP or ATP and release
pyrophosphate.
Length = 66
Score = 76.2 bits (188), Expect = 6e-20
Identities = 26/60 (43%), Positives = 42/60 (70%)
Query: 14 NYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEV 73
+D H GH + L +AKEL + L+VGV +D+ ++ KG PVF+ +ER +M++ +K+VDE
Sbjct: 7 TFDPFHLGHLDLLERAKELFDELIVGVGSDQFVNPLKGEPVFSLEERLEMLKALKYVDEN 66
>gnl|CDD|216517 pfam01467, CTP_transf_2, Cytidylyltransferase. This family
includes: Cholinephosphate cytidylyltransferase.
Glycerol-3-phosphate cytidylyltransferase.
Length = 148
Score = 67.1 bits (164), Expect = 2e-15
Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 22/110 (20%)
Query: 14 NYDMVHFGHANNLRQAKELGNYL-VVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDE 72
+D +H GH L QAKEL + +VGV +DE K +F+ +ER +M+ VD
Sbjct: 5 TFDPIHLGHLRLLEQAKELFDLDKIVGVPSDESPHK-DTKNLFSAEERLEMLELALEVDP 63
Query: 73 -------------VVEGAPYVTTL-------ETLDAYDCDFCVHGALEVL 102
+ GA + L E L + L
Sbjct: 64 NLEVDDFEDLDVYFIIGADALVNLRGWRGVTELLPEFQIVVVNRPLDYGL 113
>gnl|CDD|173922 cd02171, G3P_Cytidylyltransferase, glycerol-3-phosphate
cytidylyltransferase. Glycerol-3-phosphate
cytidylyltransferase,(CDP-glycerol pyrophosphorylase).
Glycerol-3-phosphate cytidyltransferase acts in
pathways of teichoic acid biosynthesis. Teichoic acids
are substituted polymers, linked by phosphodiester
bonds, of glycerol, ribitol, etc. An example is
poly(glycerol phosphate), the major teichoic acid of
the Bacillus subtilis cell wall. Most, but not all,
species encoding proteins in this family are
Gram-positive bacteria. A closely related protein
assigned a different function experimentally is a human
ethanolamine-phosphate cytidylyltransferase.
Length = 129
Score = 59.8 bits (145), Expect = 9e-13
Identities = 27/83 (32%), Positives = 46/83 (55%)
Query: 15 YDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVV 74
+D++H GH N L +AK LG+ L+V V TDE + V ++R +++ I++VD V+
Sbjct: 10 FDLLHIGHLNLLERAKALGDKLIVAVSTDEFNAGKGKKAVIPYEQRAEILESIRYVDLVI 69
Query: 75 EGAPYVTTLETLDAYDCDFCVHG 97
+ +E + Y+ D V G
Sbjct: 70 PETNWEQKIEDIKKYNVDVFVMG 92
>gnl|CDD|131254 TIGR02199, rfaE_dom_II, rfaE bifunctional protein, domain II.
RfaE is a protein involved in the biosynthesis of
ADP-L-glycero-D-manno-heptose, a precursor for LPS
inner core biosynthesis. RfaE is a bifunctional protein
in E. coli, and separate proteins in some other genome.
Domain I (TIGR02198) is suggested to act in
D-glycero-D-manno-heptose 1-phosphate biosynthesis,
while domain II (this family) adds ADP to yield
ADP-D-glycero-D-manno-heptose [Cell envelope,
Biosynthesis and degradation of surface polysaccharides
and lipopolysaccharides].
Length = 144
Score = 57.7 bits (140), Expect = 6e-12
Identities = 23/62 (37%), Positives = 42/62 (67%), Gaps = 2/62 (3%)
Query: 15 YDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGP--PVFTQQERYKMVRGIKWVDE 72
+D++H GH + L+QA+ LG+ LVVGV++D + + KG P+ +++R +++ + VD
Sbjct: 20 FDILHAGHVSYLQQARALGDRLVVGVNSDASVKRLKGETRPINPEEDRAEVLAALSSVDY 79
Query: 73 VV 74
VV
Sbjct: 80 VV 81
>gnl|CDD|130581 TIGR01518, g3p_cytidyltrns, glycerol-3-phosphate
cytidylyltransferase. This model describes
glycerol-3-phosphate cytidyltransferase, also called
CDP-glycerol pyrophosphorylase. A closely related
protein assigned a different function experimentally is
a human ethanolamine-phosphate cytidylyltransferase (EC
2.7.7.14). Glycerol-3-phosphate cytidyltransferase acts
in pathways of teichoic acid biosynthesis. Teichoic
acids are substituted polymers, linked by
phosphodiester bonds, of glycerol, ribitol, etc. An
example is poly(glycerol phosphate), the major teichoic
acid of the Bacillus subtilis cell wall. Most but not
all species encoding proteins in this family are
Gram-positive bacteria [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan].
Length = 125
Score = 56.8 bits (137), Expect = 1e-11
Identities = 24/83 (28%), Positives = 47/83 (56%)
Query: 15 YDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVV 74
+D++H+GH N L +AK+LG+YL+V + TDE + + + + R ++ I++VD V+
Sbjct: 7 FDLLHWGHINLLERAKQLGDYLIVALSTDEFNLQKQKKAYHSYEHRKLILETIRYVDLVI 66
Query: 75 EGAPYVTTLETLDAYDCDFCVHG 97
+ + + ++ D V G
Sbjct: 67 PEKSWEQKKQDIIDFNIDVFVMG 89
>gnl|CDD|173923 cd02172, RfaE_N, N-terminal domain of RfaE. RfaE is a protein
involved in the biosynthesis of
ADP-L-glycero-D-manno-heptose, a precursor for LPS
inner core biosynthesis. RfaE is a bifunctional protein
in Escherichia coli, and separate proteins in other
organisms. Domain I is suggested to act in
D-glycero-D-manno-heptose 1-phosphate biosynthesis,
while domain II (this family) adds ADP to yield
ADP-D-glycero-D-manno-heptose .
Length = 144
Score = 57.0 bits (138), Expect = 1e-11
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 15 YDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVV 74
+D++H GH +L+ A+ LG+ LVV + +D ++K G P+F + R +++ + +VD VV
Sbjct: 13 FDLLHPGHVRHLQAARSLGDILVVSLTSDRYVNKGPGRPIFPEDLRAEVLAALGFVDYVV 72
Query: 75 EGAPYVTTLETLDAYDCDFCVHG 97
T LE +DA + V G
Sbjct: 73 L-FDNPTALEIIDALQPNIYVKG 94
>gnl|CDD|225425 COG2870, RfaE, ADP-heptose synthase, bifunctional sugar
kinase/adenylyltransferase [Cell envelope biogenesis,
outer membrane].
Length = 467
Score = 56.9 bits (138), Expect = 9e-11
Identities = 22/62 (35%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 15 YDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGP--PVFTQQERYKMVRGIKWVDE 72
+D++H GH L QA+ LG+ L+VGV++D + + KG P+ ++++R ++ ++ VD
Sbjct: 341 FDILHAGHVTYLAQARALGDRLIVGVNSDASVKRLKGESRPINSEEDRAAVLAALESVDL 400
Query: 73 VV 74
VV
Sbjct: 401 VV 402
>gnl|CDD|183085 PRK11316, PRK11316, bifunctional heptose 7-phosphate kinase/heptose
1-phosphate adenyltransferase; Provisional.
Length = 473
Score = 47.1 bits (113), Expect = 2e-07
Identities = 21/62 (33%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 15 YDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGP--PVFTQQERYKMVRGIKWVDE 72
+D++H GH + L A++LG+ L+V V++D + + KG PV ++R ++ ++ VD
Sbjct: 349 FDILHAGHVSYLANARKLGDRLIVAVNSDASVKRLKGEGRPVNPLEQRMAVLAALEAVDW 408
Query: 73 VV 74
VV
Sbjct: 409 VV 410
>gnl|CDD|234834 PRK00777, PRK00777, phosphopantetheine adenylyltransferase;
Provisional.
Length = 153
Score = 41.4 bits (98), Expect = 1e-05
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 15 YDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVV 74
+D +H GH LR+A ELG + +G+ +DE +K V + R K ++ K++ V
Sbjct: 10 FDPLHDGHRALLRKAFELGKRVTIGLTSDEFAKSYKKHKVRPYEVRLKNLK--KFLKAVE 67
Query: 75 EGAPY-VTTLETLDAY 89
Y + ++ D Y
Sbjct: 68 YDREYEIVKID--DPY 81
>gnl|CDD|234912 PRK01170, PRK01170, phosphopantetheine
adenylyltransferase/unknown domain fusion protein;
Provisional.
Length = 322
Score = 37.9 bits (88), Expect = 4e-04
Identities = 15/50 (30%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 15 YDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMV 64
+ +H GH L++A E G+ +V+G+ +DE + K+K P+ ++R + +
Sbjct: 9 FSKLHKGHKALLKKAIETGDEVVIGLTSDEYVRKNKVYPI-PYEDRKRKL 57
>gnl|CDD|223950 COG1019, COG1019, Predicted nucleotidyltransferase [General
function prediction only].
Length = 158
Score = 36.9 bits (86), Expect = 5e-04
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 15 YDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVV 74
+D +H GH L A E+G+ + +G+ +DE K K + + R + +R +++ +
Sbjct: 14 FDRLHDGHKKLLEVAFEIGDRVTIGLTSDELAKKKKKEKIEPYEVRLRNLR--NFLESIK 71
Query: 75 EGAPYVTTLETLDAY 89
+ ++ D Y
Sbjct: 72 ADYEEIVPID--DPY 84
>gnl|CDD|173912 cd02156, nt_trans, nucleotidyl transferase superfamily. nt_trans
(nucleotidyl transferase) This superfamily includes the
class I amino-acyl tRNA synthetases, pantothenate
synthetase (PanC), ATP sulfurylase, and the
cytidylyltransferases, all of which have a conserved
dinucleotide-binding domain.
Length = 105
Score = 33.3 bits (76), Expect = 0.007
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 10/63 (15%)
Query: 16 DMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYK-------MVRGIK 68
+H GHA + +AK + + VV + + + K + E K V G
Sbjct: 9 GYLHIGHAKLICRAKGIADQCVVRIDDNPPV---KVWQDPHELEERKESIEEDISVCGED 65
Query: 69 WVD 71
+
Sbjct: 66 FQQ 68
>gnl|CDD|198344 cd10424, GST_C_9, C-terminal, alpha helical domain of an unknown
subfamily 9 of Glutathione S-transferases. Glutathione
S-transferase (GST) C-terminal domain family, unknown
subfamily 9; composed of uncharacterized proteins with
similarity to GSTs. GSTs are cytosolic dimeric proteins
involved in cellular detoxification by catalyzing the
conjugation of glutathione (GSH) with a wide range of
endogenous and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins,
and products of oxidative stress. GSTs also show GSH
peroxidase activity and are involved in the synthesis
of prostaglandins and leukotrienes. The GST fold
contains an N-terminal thioredoxin-fold domain and a
C-terminal alpha helical domain, with an active site
located in a cleft between the two domains. GSH binds
to the N-terminal domain while the hydrophobic
substrate occupies a pocket in the C-terminal domain.
Length = 103
Score = 31.6 bits (72), Expect = 0.024
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 50 KGPPVFTQQERYKMVRGIKWVDEVVEGAPYVTTLETLDAYDCDFCVH 96
K P ++ R ++RGI + + APYV ET DC VH
Sbjct: 28 KVSPEIKEEVRKDLLRGIAALARLARFAPYVAG-ETFTLADCAAFVH 73
>gnl|CDD|224660 COG1746, CCA1, tRNA nucleotidyltransferase (CCA-adding enzyme)
[Translation, ribosomal structure and biogenesis].
Length = 443
Score = 32.3 bits (74), Expect = 0.030
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 35 YLVVGVHTDEEISKHKGPPVFTQQ-ERYKMVRGIKWVDE---VVEGAPYVTTLETLDAYD 90
L + I GPPV+T+ R+ ++W + VE YVT + L+
Sbjct: 338 LLELESKELPRIELRVGPPVWTEHAVRFIEKYDVRWREGGPLAVEDRLYVTIVRVLEDIL 397
>gnl|CDD|233444 TIGR01510, coaD_prev_kdtB, pantetheine-phosphate
adenylyltransferase, bacterial. This model describes
pantetheine-phosphate adenylyltransferase, the
penultimate enzyme of coenzyme A (CoA) biosynthesis in
bacteria. It does not show any strong homology to
eukaryotic enzymes of coenzyme A biosynthesis. This
protein was previously designated KdtB and postulated
(because of cytidyltransferase homology and proximity to
kdtA) to be an enzyme of LPS biosynthesis, a
cytidyltransferase for 3-deoxy-D-manno-2-octulosonic
acid. However, no activity toward that compound was
found with either CTP or ATP. The phylogenetic
distribution of this enzyme is more consistent with
coenzyme A biosynthesis than with LPS biosynthesis
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Pantothenate and coenzyme A].
Length = 155
Score = 30.3 bits (69), Expect = 0.12
Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 16/87 (18%)
Query: 15 YDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVV 74
+D V GH + +++A L + ++V V + K P+F+ +ER ++++ +
Sbjct: 8 FDPVTNGHLDIIKRAAALFDEVIVAV----AKNPSKK-PLFSLEERVELIK------DAT 56
Query: 75 EGAPYVTTLETLDAYDCDFCVHGALEV 101
+ P V D +D V A E+
Sbjct: 57 KHLPNVRV----DVFDG-LLVDYAKEL 78
>gnl|CDD|173915 cd02164, PPAT_CoAS, phosphopantetheine adenylyltransferase domain
of eukaryotic and archaeal bifunctional enzymes. The
PPAT domain of the bifunctional enzyme with PPAT and
DPCK functions. The final two steps of the CoA
biosynthesis pathway are catalyzed by
phosphopantetheine adenylyltransferase (PPAT) and
dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction
involves the reversible adenylation of
4'-phosphopantetheine to form 3'-dPCoA and PPi, and
DPCK catalyses phosphorylation of the 3'-hydroxy group
of the ribose moiety of dPCoA. In eukaryotes the two
enzymes are part of a large multienzyme complex .
Studies in Corynebacterium ammoniagenes suggested that
separate enzymes were present, and this was confirmed
through identification of the bacterial PPAT/CoAD.
Length = 143
Score = 29.2 bits (66), Expect = 0.28
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 15 YDMVHFGHANNLRQAKELGNY-LVVGVHTDE 44
+D +H GH L A L L++GV +DE
Sbjct: 8 FDRLHDGHKILLSVAFLLAGEKLIIGVTSDE 38
>gnl|CDD|234304 TIGR03671, cca_archaeal, CCA-adding enzyme.
Length = 408
Score = 29.5 bits (67), Expect = 0.28
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
Query: 35 YLVVGVHTDEEISKHKGPPVFTQQ------ERYKMVRGIKWVDE 72
L + + H GPPV+ + E+Y+ V +++
Sbjct: 333 LLELESAELPRVKLHVGPPVWVRDHAEKFIEKYEDVDYGPFIEG 376
>gnl|CDD|212537 cd11589, Agmatinase_like_1, Agmatinase and related proteins. This
family includes known and predicted bacterial agmatinase
(agmatine ureohydrolase; AUH; SpeB; EC=3.5.3.11), a
binuclear manganese metalloenzyme, belonging to the
ureohydrolase superfamily. It is a key enzyme in the
synthesis of polyamine putrescine; it catalyzes
hydrolysis of agmatine to yield urea and putrescine, the
precursor for biosynthesis of higher polyamines,
spermidine, and spermine. Agmatinase from Deinococcus
radiodurans shows approximately 33% of sequence identity
to human mitochondrial agmatinase. An analysis of the
evolutionary relationship among ureohydrolase
superfamily enzymes indicates the pathway involving
arginine decarboxylase and agmatinase evolved earlier
than the arginase pathway of polyamine.
Length = 274
Score = 29.5 bits (67), Expect = 0.30
Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 14/84 (16%)
Query: 18 VHFGHANNLRQAKEL---GNYLVVGVH-------TDEEISKHKGPPVFTQQERYKMVRGI 67
V +G+++ +R+A E+ G +G+ D + ++ G + T +E ++ GI
Sbjct: 130 VRYGNSSPMRRASEMPHVGRITQIGIRGLGSARPEDFDDARAYGSVIITAREVHR--IGI 187
Query: 68 KWV-DEVVEGAPYVTTLETLDAYD 90
+ V D++ +G Y T++ +D D
Sbjct: 188 EAVLDQIPDGENYYITID-IDGLD 210
>gnl|CDD|185678 cd02039, cytidylyltransferase_like, Cytidylyltransferase-like
domain. Cytidylyltransferase-like domain. Many of
these proteins are known to use CTP or ATP and release
pyrophosphate. Protein families that contain at least
one copy of this domain include citrate lyase ligase,
pantoate-beta-alanine ligase, glycerol-3-phosphate
cytidyltransferase, ADP-heptose synthase,
phosphocholine cytidylyltransferase, lipopolysaccharide
core biosynthesis protein KdtB, the bifunctional
protein NadR, and a number whose function is unknown.
Length = 143
Score = 28.9 bits (65), Expect = 0.31
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 14 NYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMV-RGIKWVDE 72
++ H GH +++A E V+ + K + F+ ER +M+ +K +
Sbjct: 7 RFEPFHLGHLKLIKEALEEALDEVIIIIVSNPPKKKRNKDPFSLHERVEMLKEILKDRLK 66
Query: 73 VV 74
VV
Sbjct: 67 VV 68
>gnl|CDD|224242 COG1323, COG1323, Predicted nucleotidyltransferase [General
function prediction only].
Length = 358
Score = 28.9 bits (65), Expect = 0.43
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 8 ATSLQSNYDMVHFGHANNLRQAKEL--GNYLVVGVHTDEEISKHKGPPVFTQQERYKMVR 65
+ + + Y+ H GH ++ +A+E G+ ++ + D ++ P + + ER KM
Sbjct: 3 SIGIIAEYNPFHNGHQYHINKAREEFKGDEIIAVMSGD--FTQRGEPAIGHKWERKKMAL 60
Query: 66 GIKWVDEVVEG 76
D V+E
Sbjct: 61 EGG-ADLVIEL 70
>gnl|CDD|223984 COG1056, NadR, Nicotinamide mononucleotide adenylyltransferase
[Coenzyme metabolism].
Length = 172
Score = 27.3 bits (61), Expect = 1.7
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 18 VHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVR 65
+H GH +++A + L++ + + +E K P FT ER M+R
Sbjct: 15 LHTGHLYVIKRALSKVDELIIVIGSAQESHTLKNP--FTAGERIPMIR 60
>gnl|CDD|182155 PRK09936, PRK09936, hypothetical protein; Provisional.
Length = 296
Score = 27.5 bits (61), Expect = 1.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 23 ANNLRQAKELGNYLVVGVHTDEEISKH 49
A L A++ G LVVG++ D E H
Sbjct: 75 AKRLAAAQQAGLKLVVGLYADPEFFMH 101
>gnl|CDD|184092 PRK13501, PRK13501, transcriptional activator RhaR; Provisional.
Length = 290
Score = 27.2 bits (60), Expect = 2.0
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
Query: 2 ETLNLLATSLQ----SNYDMVHFGHANNL--RQAKEL 32
E L+L+ ++LQ + +DM F H N L R K+L
Sbjct: 176 EQLDLIMSALQQSLGAYFDMADFCHKNQLVERSLKQL 212
>gnl|CDD|237340 PRK13300, PRK13300, tRNA CCA-pyrophosphorylase; Provisional.
Length = 447
Score = 27.2 bits (61), Expect = 2.1
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 35 YLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVVEGAPYV 80
L + V + H GPPV+ ++ + K+ D V P++
Sbjct: 336 LLELEVAELPNVKLHIGPPVWVREHAENFIE--KYEDSVY--GPFI 377
>gnl|CDD|236220 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional.
Length = 288
Score = 26.5 bits (59), Expect = 3.5
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 7 LATSLQSNYDMVHFGHANN 25
+L + +D+ GHA+N
Sbjct: 242 FRAALDAVFDLHQLGHAHN 260
>gnl|CDD|234674 PRK00168, coaD, phosphopantetheine adenylyltransferase;
Provisional.
Length = 159
Score = 25.8 bits (58), Expect = 4.5
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 15 YDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVR 65
+D + GH + + +A L + ++V V I+ K P +F+ +ER +++R
Sbjct: 10 FDPITNGHLDIIERASRLFDEVIVAV----AINPSKKP-LFSLEERVELIR 55
>gnl|CDD|185680 cd02165, NMNAT, Nicotinamide/nicotinate mononucleotide
adenylyltransferase. Nicotinamide/nicotinate
mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT).
NMNAT represents the primary bacterial and eukaryotic
adenylyltransferases for nicotinamide-nucleotide and
for the deamido form, nicotinate nucleotide. It is an
indispensable enzyme in the biosynthesis of NAD(+) and
NADP(+). Nicotinamide-nucleotide adenylyltransferase
synthesizes NAD via the salvage pathway, while
nicotinate-nucleotide adenylyltransferase synthesizes
the immediate precursor of NAD via the de novo pathway.
Human NMNAT displays unique dual substrate specificity
toward both NMN and NaMN, and can participate in both
de novo and salvage pathways of NAD synthesis.
Length = 192
Score = 25.7 bits (57), Expect = 5.2
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 7/56 (12%)
Query: 13 SNYDMVHFGH---ANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVR 65
++D H GH A + L L++ HK P + + R +M++
Sbjct: 6 GSFDPPHLGHLAIAEEALEELGLDRVLLLPSA----NPPHKPPKPASFEHRLEMLK 57
>gnl|CDD|183277 PRK11689, PRK11689, aromatic amino acid exporter; Provisional.
Length = 295
Score = 26.0 bits (58), Expect = 5.2
Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
Query: 21 GHANNLRQAKELG--NYL 36
G+AN RQA E+G NYL
Sbjct: 83 GYANTRRQAIEVGMVNYL 100
>gnl|CDD|177670 PLN00036, PLN00036, 40S ribosomal protein S4; Provisional.
Length = 261
Score = 25.8 bits (57), Expect = 5.4
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 12 QSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEIS--KHKGPPVFTQQERYK 62
+ +++++H A A LGN V+G T IS K KG + +E K
Sbjct: 202 KGSFEIIHVKDATGHEFATRLGNVFVIGKGTKPWISLPKGKGIKLSIIEEARK 254
>gnl|CDD|217421 pfam03200, Glyco_hydro_63, Mannosyl oligosaccharide glucosidase.
This is a family of eukaryotic enzymes belonging to
glycosyl hydrolase family 63. They catalyze the specific
cleavage of the non-reducing terminal glucose residue
from Glc(3)Man(9)GlcNAc(2). Mannosyl oligosaccharide
glucosidase EC:3.2.1.106 is the first enzyme in the
N-linked oligosaccharide processing pathway.
Length = 775
Score = 25.8 bits (57), Expect = 6.7
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 16 DMVHFGHANNLRQAKELGNYLVVGVHTDEEISK----HKG 51
+ + L ++E G Y G HTD+E S HKG
Sbjct: 589 LLTDNDLLDKLHWSEEEGAYCDFGNHTDDEPSLQLVCHKG 628
>gnl|CDD|164900 PHA02107, PHA02107, hypothetical protein.
Length = 216
Score = 25.3 bits (55), Expect = 7.2
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 64 VRGIKWVDEVVEGAPYVTTLETLDAY 89
V G WV+ E L+TL+AY
Sbjct: 79 VCGTIWVNTSFESDCVTNRLQTLEAY 104
>gnl|CDD|223933 COG1001, AdeC, Adenine deaminase [Nucleotide transport and
metabolism].
Length = 584
Score = 25.7 bits (57), Expect = 7.4
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 21 GHANNLRQAKELGNYLVVGVHTDEE 45
GHA L KEL Y+ G+ TD E
Sbjct: 207 GHAPGLS-GKELNAYIAAGISTDHE 230
>gnl|CDD|235305 PRK04527, PRK04527, argininosuccinate synthase; Provisional.
Length = 400
Score = 25.2 bits (55), Expect = 8.6
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 57 QQERYKMVRGIKWVDEVVEGA---PYVTTLETLDAYDCDFCVHGALEVLV 103
QQ R+K KWV+ V EG P T +E V+G + +
Sbjct: 295 QQNRFKPDVARKWVELVYEGFYHDPLKTDIEAFLK-SSQAKVNGEVTLET 343
>gnl|CDD|223274 COG0196, RibF, FAD synthase [Coenzyme metabolism].
Length = 304
Score = 25.3 bits (56), Expect = 8.8
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 14 NYDMVHFGHANNLRQAKELG 33
N+D VH GH L QA E
Sbjct: 23 NFDGVHLGHQKLLAQALEAA 42
>gnl|CDD|107365 cd06370, PBP1_Speract_GC_like, Ligand-binding domain of membrane
bound guanylyl cyclases. Ligand-binding domain of
membrane bound guanylyl cyclases (GCs), which are known
to be activated by sperm-activating peptides (SAPs),
such as speract or resact. These ligand peptides are
released by a range of invertebrates to stimulate the
metabolism and motility of spermatozoa and are also
potent chemoattractants. These GCs contain a single
transmembrane segment, an extracellular ligand binding
domain, and intracellular protein kinase-like and
cyclase catalytic domains. GCs of insect and nematodes,
which exhibit high sequence similarity to the speract
receptor are also included in this model.
Length = 404
Score = 25.4 bits (56), Expect = 8.9
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 9/40 (22%)
Query: 18 VHFGHANNLRQ-AKEL--------GNYLVVGVHTDEEISK 48
V G AN LRQ + G+Y+V+GV +
Sbjct: 202 VFIGEANELRQFLMSMLDEGLLESGDYMVLGVDIEYYDRD 241
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.388
Gapped
Lambda K H
0.267 0.0750 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,418,444
Number of extensions: 452247
Number of successful extensions: 444
Number of sequences better than 10.0: 1
Number of HSP's gapped: 433
Number of HSP's successfully gapped: 50
Length of query: 112
Length of database: 10,937,602
Length adjustment: 76
Effective length of query: 36
Effective length of database: 7,566,698
Effective search space: 272401128
Effective search space used: 272401128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.2 bits)