RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11152
(112 letters)
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway,
CMP, CTP, phosphoethanolamine, cytidylyltra SGC,
structural genomics consortium; HET: C5P; 2.00A {Homo
sapiens}
Length = 341
Score = 152 bits (386), Expect = 6e-47
Identities = 67/84 (79%), Positives = 77/84 (91%)
Query: 15 YDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVV 74
YDMVH+GH+N LRQA+ +G+YL+VGVHTDEEI+KHKGPPVFTQ+ERYKMV+ IKWVDEVV
Sbjct: 16 YDMVHYGHSNQLRQARAMGDYLIVGVHTDEEIAKHKGPPVFTQEERYKMVQAIKWVDEVV 75
Query: 75 EGAPYVTTLETLDAYDCDFCVHGA 98
APYVTTLETLD Y+CDFCVHG
Sbjct: 76 PAAPYVTTLETLDKYNCDFCVHGN 99
Score = 116 bits (293), Expect = 4e-33
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 15 YDMVHFGHANNLRQAKELGN--YLVVGVHTDEEISKHKGP--PVFTQQERYKMVRGIKWV 70
+D+ H GH + L + L Y++ G+H D+E++ +KG P+ ER V ++V
Sbjct: 207 FDLFHIGHVDFLEKVHRLAERPYIIAGLHFDQEVNHYKGKNYPIMNLHERTLSVLACRYV 266
Query: 71 DEVVEGAPYVTTLETLDAYDCDFCVHGA 98
EVV GAPY T E L + D HG
Sbjct: 267 SEVVIGAPYAVTAELLSHFKVDLVCHGK 294
>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP;
2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A*
Length = 129
Score = 137 bits (349), Expect = 8e-44
Identities = 25/83 (30%), Positives = 47/83 (56%)
Query: 15 YDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVV 74
+D++H+GH L +AK+LG+YLVV + TDE + + + + R ++ I++VDEV+
Sbjct: 10 FDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYEHRKLILETIRYVDEVI 69
Query: 75 EGAPYVTTLETLDAYDCDFCVHG 97
+ + + ++ D V G
Sbjct: 70 PEKNWEQKKQDIIDHNIDVFVMG 92
>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A
{Staphylococcus aureus}
Length = 132
Score = 137 bits (347), Expect = 2e-43
Identities = 26/83 (31%), Positives = 47/83 (56%)
Query: 15 YDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVV 74
YD++H+GH LR+A+E+G+YL+V + TDE + ++R M+ I++VD V+
Sbjct: 10 YDLLHYGHIELLRRAREMGDYLIVALSTDEFNQIKHKKSYYDYEQRKMMLESIRYVDLVI 69
Query: 75 EGAPYVTTLETLDAYDCDFCVHG 97
+ + ++ +D D V G
Sbjct: 70 PEKGWGQKEDDVEKFDVDVFVMG 92
>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold,
phospholipid synthesis, phosphatidylcholine,
phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A
{Rattus norvegicus}
Length = 236
Score = 129 bits (325), Expect = 4e-39
Identities = 37/85 (43%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 15 YDMVHFGHANNLRQAKEL--GNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDE 72
+D+ H GHA L QAK L YL+VGV +DE KG V + ERY V+ ++VDE
Sbjct: 85 FDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAVQHCRYVDE 144
Query: 73 VVEGAPYVTTLETLDAYDCDFCVHG 97
VV AP+ T E L + DF H
Sbjct: 145 VVRNAPWTLTPEFLAEHRIDFVAHD 169
>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI,
MCSG, protein structure initiative; HET: AMP; 1.99A
{Thermoplasma volcanium GSS1}
Length = 143
Score = 72.2 bits (178), Expect = 9e-18
Identities = 20/62 (32%), Positives = 36/62 (58%)
Query: 15 YDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVV 74
+D++H GH + L+++K+LG+ LVV V D + P+F + R ++ +K VD +
Sbjct: 11 FDILHLGHIHYLKESKKLGDELVVVVARDSTARNNGKIPIFDENSRLALISELKVVDRAI 70
Query: 75 EG 76
G
Sbjct: 71 LG 72
>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown
function, structural genomics, MCSG, PSI-2, protein
structure initiative; 1.60A {Archaeoglobus fulgidus}
Length = 148
Score = 44.6 bits (105), Expect = 4e-07
Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 15 YDMVHFGHANNLRQAKELGN-YLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEV 73
++ +H GH + A +LG + +GV +D + + V R + V+ ++V
Sbjct: 9 FEPLHEGHKKLIDVAIKLGGRDITIGVTSDRMA-RARIRSVLPFAIRAENVK--RYVMRK 65
Query: 74 VEGAPYVTTLE 84
P + +
Sbjct: 66 YGFEPEIVKIT 76
>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural
genomics; HET: ATP; 2.00A {Methanocaldococcus
jannaschii} SCOP: c.26.1.3
Length = 168
Score = 37.8 bits (88), Expect = 2e-04
Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 18 VHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVR 65
H GH +++ E + +++G+ + ++ + P FT ER M+
Sbjct: 12 FHKGHLEVIKKIAEEVDEIIIGIGSAQKSHTLENP--FTAGERILMIT 57
>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide
binding fold, structural genomics, PSI; HET: NAD; 1.90A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A*
1m8k_A*
Length = 181
Score = 36.5 bits (84), Expect = 6e-04
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 18 VHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVR 65
H GH ++ E + L++ + + + + P FT ER M+
Sbjct: 15 FHRGHLQVIKSILEEVDELIICIGSAQLSHSIRDP--FTAGERVMMLT 60
>3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural
genomics, PSI, MCS protein structure initiative; 1.91A
{Methanocaldococcus jannaschii}
Length = 357
Score = 35.7 bits (82), Expect = 0.001
Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 15/96 (15%)
Query: 14 NYDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMV--RGIKWVD 71
Y+ +H GH L + KE G ++ V + E S P + R +M G D
Sbjct: 60 EYNPLHKGHKYALEKGKEHGIFISV-LPGPLERSGRGIPYFLNRYIRAEMAIRAG---AD 115
Query: 72 EVVEGAPYVTT---------LETLDAYDCDFCVHGA 98
VVEG P ++ + + G
Sbjct: 116 IVVEGPPMGIMGSGQYMRCLIKMFYSLGAEIIPRGY 151
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual
domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis
SP}
Length = 341
Score = 34.6 bits (79), Expect = 0.003
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 18 VHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVR 65
H GH L A E +++ + + + + P + ER M+
Sbjct: 19 FHLGHLRTLNLALEKAEQVIIILGSHRVAADTRNP--WRSPERMAMIE 64
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual
domains, hydrolase; HET: AMP; 2.30A {Francisella
tularensis} PDB: 2r5w_B
Length = 352
Score = 33.4 bits (76), Expect = 0.007
Identities = 10/55 (18%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 18 VHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDE 72
H GH +N+ A + +++ + + K P F+ ++R +M+ +
Sbjct: 19 FHKGHLHNIIIALQNSKKVIINIGSCFNTPNIKNP--FSFEQRKQMIE--SDLQV 69
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase,
ribosylnicotinamide KINA transferase; HET: NAD; 2.90A
{Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Length = 365
Score = 33.0 bits (74), Expect = 0.011
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 15 YDMVHFGHANNLRQAKELGNYLVVGVHTDEEISK-----HKGPPVFTQQERYKMVR 65
+ VH GH N + +A + L V V +D K + T Q+R + ++
Sbjct: 11 FYPVHTGHINMIYEAFSKVDELHVIVCSDTVRDLKLFYDSKMKRMPTVQDRLRWMQ 66
>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle
structural genomics center for infect disease, coenzyme
A, COA; HET: 4PS ADE PG4; 1.60A {Burkholderia
pseudomallei} PDB: 3ikz_A* 3pxu_A*
Length = 187
Score = 30.3 bits (69), Expect = 0.085
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 15 YDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVR 65
+D + GH + +R+A + + LVVGV S+ K P F+ +ER K+
Sbjct: 31 FDPLTRGHEDLVRRASSIFDTLVVGV----ADSRAKKP-FFSLEERLKIAN 76
>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine
adenylyltranferase; 2.25A {Coxiella burnetii}
Length = 162
Score = 29.8 bits (68), Expect = 0.11
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 16 DMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVR 65
D + GH + + +A L N ++V + K P +ER ++
Sbjct: 15 DPLTNGHVDIIERALPLFNKIIVAC----APTSRKDP-HLKLEERVNLIA 59
>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis,
nucleotidyltransferase; HET: PNS; 1.64A {Escherichia
coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A*
3l92_A* 3l93_A
Length = 158
Score = 29.3 bits (67), Expect = 0.13
Identities = 11/51 (21%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 15 YDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVR 65
+D + GH + + +A ++ +++++ + S K P +FT +ER + +
Sbjct: 10 FDPITNGHIDIVTRATQMFDHVILAI----AASPSKKP-MFTLEERVALAQ 55
>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural G
JCSG, protein structure initiative, PSI, joint center
for S genomics; HET: PNS; 2.20A {Thermotoga maritima}
SCOP: c.26.1.3
Length = 173
Score = 29.0 bits (66), Expect = 0.19
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 11/67 (16%)
Query: 15 YDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVV 74
+D + GH + +++A + + LVV V + K +FT +ER K++ EV+
Sbjct: 21 FDPITLGHVDIIKRALSIFDELVVLV----TENPRKKC-MFTLEERKKLIE------EVL 69
Query: 75 EGAPYVT 81
V
Sbjct: 70 SDLDGVK 76
>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET:
ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3
Length = 169
Score = 29.0 bits (66), Expect = 0.20
Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 15 YDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVR 65
+D V +GH + +++ + + V V + K P +F+ +ER +++R
Sbjct: 11 FDPVTYGHLDIIKRGAHIFEQVYVCV----LNNSSKKP-LFSVEERCELLR 56
>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO
pathway, coenzyme A biosynthesis,
nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus
aureus}
Length = 168
Score = 29.0 bits (66), Expect = 0.23
Identities = 9/51 (17%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 15 YDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVR 65
+D + +GH + + ++ + + + V V + K F+ +ER ++
Sbjct: 12 FDPITYGHLDIIERSTDRFDEIHVCV----LKNSKKEG-TFSLEERMDLIE 57
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.26
Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 21/88 (23%)
Query: 16 DMVHFGHANNL--RQAKEL-----GNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIK 68
+V+ H +L +Q KE YL + V + E + H+ + + Y + +
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR-----SIVDHYNIPKTFD 460
Query: 69 WVDEVVEGAPYVTTLETLDAYDCDFCVH 96
D LD Y H
Sbjct: 461 SDDL---------IPPYLDQYFYSHIGH 479
>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A
biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A
{Thermus thermophilus} SCOP: c.26.1.3
Length = 160
Score = 28.6 bits (65), Expect = 0.28
Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 15 YDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGP-PVFTQQERYKMVR 65
+D + GH + +++A L + V V + K +F+ +ER ++R
Sbjct: 9 FDPLTNGHLDVIQRASRLFEKVTVAV----LENPSKRGQYLFSAEERLAIIR 56
>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695
strain, mutant I4V/N76Y, phosphopa adenylyltransferase;
1.75A {Helicobacter pylori} PDB: 3otw_A*
Length = 157
Score = 28.6 bits (65), Expect = 0.29
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 16 DMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVR 65
D V GH + + ++ EL L+V V S K P +F+ ER KM++
Sbjct: 12 DPVTNGHIDIIHRSSELFEKLIVAV----AHSSAKNP-MFSLDERLKMIQ 56
>1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT;
1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A*
Length = 213
Score = 28.4 bits (64), Expect = 0.34
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 13/54 (24%)
Query: 18 VHFGHANNLRQAKELGNYLVVGVHTDE------EISKHKGPPVFTQQERYKMVR 65
VH+GH L+ + L N + + H+ P +R M+
Sbjct: 15 VHYGH---LKPVETLANLI----GLTRVTIIPNNVPPHRPQPEANSVQRKHMLE 61
>3nd5_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO
pathway; 2.30A {Enterococcus faecalis} PDB: 3nd6_A*
3nd7_A*
Length = 171
Score = 28.3 bits (64), Expect = 0.35
Identities = 12/51 (23%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 15 YDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVR 65
+D + GH N + ++ +L + +++GV I+ K +FT +E+ ++
Sbjct: 11 FDPMTNGHLNLIERSAKLFDEVIIGV----FINTSKQT-LFTPEEKKYLIE 56
>1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta
domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa}
PDB: 1yul_A* 1yun_A*
Length = 242
Score = 28.5 bits (64), Expect = 0.41
Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 13/54 (24%)
Query: 18 VHFGHANNLRQAKELGNYLVVGVHTDE------EISKHKGPPVFTQQERYKMVR 65
VH GH +R A E+ DE H+ P + +R MV
Sbjct: 35 VHIGH---MRSAVEMAEQF----ALDELRLLPNARPPHRETPQVSAAQRLAMVE 81
>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS;
1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A*
3lcj_A* 3rba_A* 1tfu_A* 3rff_A 3rhs_A*
Length = 177
Score = 27.9 bits (63), Expect = 0.48
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 11/67 (16%)
Query: 15 YDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVV 74
+D V GH + +A + +VV + ++ K +F ER MV+ E
Sbjct: 30 FDPVTLGHVDIFERAAAQFDEVVVAI----LVNPAKTG-MFDLDERIAMVK------EST 78
Query: 75 EGAPYVT 81
P +
Sbjct: 79 THLPNLR 85
>3kws_A Putative sugar isomerase; structural genomics, joint center
structural genomics, JCSG, protein structure initiative;
HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Length = 287
Score = 26.6 bits (59), Expect = 1.6
Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 3/69 (4%)
Query: 26 LRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVVEGAPYVTTLET 85
+ A ELG+ V+ V + T + R + + E
Sbjct: 110 IAAAGELGSTGVIIVPA---FNGQVPALPHTMETRDFLCEQFNEMGTFAAQHGTSVIFEP 166
Query: 86 LDAYDCDFC 94
L+ +C +
Sbjct: 167 LNRKECFYL 175
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability,
potential tentoxin binding hydrolase; 3.20A {Spinacia
oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Length = 498
Score = 26.5 bits (59), Expect = 1.9
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 40 VHTDEEISKHKGPPVFTQQERYK--MVRGIKWVDEVVEGAPYV 80
V T H+ P FTQ + GIK V+ + APY
Sbjct: 124 VDTRTTSPIHRSAPAFTQLDTKLSIFETGIKVVNLL---APYR 163
>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase;
rossman fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3
PDB: 1kaq_A*
Length = 194
Score = 24.8 bits (55), Expect = 5.7
Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 8/52 (15%)
Query: 18 VHFGH---ANNLRQAKELGNYLVVGVHTDEEISKHK-GPPVFTQQERYKMVR 65
H GH AN + L + I HK R +M++
Sbjct: 19 PHNGHLLMANEVLYQAGLDEIWFMPNQ----IPPHKQNEDYTDSFHRVEMLK 66
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 25.2 bits (55), Expect = 6.6
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 9/41 (21%)
Query: 52 PPVFTQQERYKMVRGIKWVDEVVEGAPYVTTLETLDAYDCD 92
P F ++ +V E + +L A D D
Sbjct: 484 APFFVPAV-SRV--------DVSEDLSRGEKIISLVAQDPD 515
>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD,
nucleotidyltransferase, pyridine nucleotide biosynthesi
transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB:
3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A*
2qtm_A*
Length = 189
Score = 24.8 bits (55), Expect = 7.3
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 20/58 (34%)
Query: 18 VHFGH---ANNLRQAKELGNYLVVGVHTDE------EISKHK-GPPVFTQQERYKMVR 65
H+GH AN + A L +E +I HK G + + + R +M+
Sbjct: 14 PHYGHLLIANEVYHALNL----------EEVWFLPNQIPPHKQGRNITSVESRLQMLE 61
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.388
Gapped
Lambda K H
0.267 0.0834 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,674,952
Number of extensions: 91298
Number of successful extensions: 260
Number of sequences better than 10.0: 1
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 43
Length of query: 112
Length of database: 6,701,793
Length adjustment: 76
Effective length of query: 36
Effective length of database: 4,579,797
Effective search space: 164872692
Effective search space used: 164872692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.2 bits)