RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11152
(112 letters)
>d1coza_ c.26.1.2 (A:) CTP:glycerol-3-phosphate
cytidylyltransferase {Bacillus subtilis [TaxId: 1423]}
Length = 126
Score = 58.4 bits (140), Expect = 6e-13
Identities = 25/83 (30%), Positives = 47/83 (56%)
Query: 15 YDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVV 74
+D++H+GH L +AK+LG+YLVV + TDE + + + + R ++ I++VDEV+
Sbjct: 10 FDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYEHRKLILETIRYVDEVI 69
Query: 75 EGAPYVTTLETLDAYDCDFCVHG 97
+ + + ++ D V G
Sbjct: 70 PEKNWEQKKQDIIDHNIDVFVMG 92
>d1lw7a1 c.26.1.3 (A:57-219) Transcriptional regulator NadR,
NMN-adenylyltransferase domain {Haemophilus influenzae
[TaxId: 727]}
Length = 163
Score = 45.9 bits (108), Expect = 6e-08
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 14 NYDMVHFGHANNLRQAKELGNYLVVGVHTDEEI-----SKHKGPPVFTQQERYKMVRGIK 68
+ VH GH N + +A + L V V +D K + T Q+R + ++ I
Sbjct: 10 KFYPVHTGHINMIYEAFSKVDELHVIVCSDTVRDLKLFYDSKMKRMPTVQDRLRWMQQIF 69
Query: 69 WVDEVVE 75
+
Sbjct: 70 KYQKNQI 76
>d1f9aa_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN)
adenylyltransferase {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 164
Score = 30.2 bits (67), Expect = 0.034
Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 15 YDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVR 65
+ H GH +++ E + +++G+ + ++ H FT ER M+
Sbjct: 9 FQPFHKGHLEVIKKIAEEVDEIIIGIGSAQKS--HTLENPFTAGERILMIT 57
>d1jhda2 c.26.1.5 (A:174-396) ATP sulfurylase catalytic domain
{Sulfur-oxidizing endosymbiont of Riftia pachyptila
[TaxId: 35843]}
Length = 223
Score = 28.7 bits (63), Expect = 0.12
Identities = 12/64 (18%), Positives = 20/64 (31%)
Query: 16 DMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVVE 75
+ +H H R A E + V VH K P + + + + + V
Sbjct: 29 NPMHRAHEELCRMAMESLDADGVVVHMLLGKLKKGDIPAPVRDAAIRTMAEVYFPPNTVM 88
Query: 76 GAPY 79
Y
Sbjct: 89 VTGY 92
>d1ej2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN)
adenylyltransferase {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 167
Score = 27.9 bits (61), Expect = 0.19
Identities = 12/73 (16%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 15 YDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEVV 74
H GH ++ E + L++ + + + H FT ER M+ + +
Sbjct: 9 MQPFHRGHLQVIKSILEEVDELIICIGSAQ--LSHSIRDPFTAGERVMMLTKALSENGIP 66
Query: 75 EGAPYVTTLETLD 87
Y+ ++ ++
Sbjct: 67 ASRYYIIPVQDIE 79
>d1kr2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN)
adenylyltransferase {Human (Homo sapiens) [TaxId:
9606]}
Length = 271
Score = 26.7 bits (58), Expect = 0.67
Identities = 16/84 (19%), Positives = 24/84 (28%), Gaps = 11/84 (13%)
Query: 15 YDMVHFGHANNLRQAKE----LGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVR----G 66
++ + H AK+ G Y VV +K + R M
Sbjct: 13 FNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDAYKKKGLIPAYHRVIMAELATKN 72
Query: 67 IKWV---DEVVEGAPYVTTLETLD 87
KWV + TL+ L
Sbjct: 73 SKWVEVDTWESLQKEWKETLKVLR 96
>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain,
N-terminal (CoA-binding) domain {Thermus thermophilus
[TaxId: 274]}
Length = 121
Score = 25.9 bits (57), Expect = 0.79
Identities = 8/42 (19%), Positives = 15/42 (35%)
Query: 27 RQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIK 68
+Q G +V GV + + G PV+ + +
Sbjct: 25 KQMLTYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVAHHEVD 66
>d1mrza2 c.26.1.3 (A:2-158) FMN adenylyltransferase domain of
bifunctional FAD synthetase {Thermotoga maritima
[TaxId: 2336]}
Length = 157
Score = 26.0 bits (56), Expect = 1.0
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 5/55 (9%)
Query: 14 NYDMVHFGHANNLRQAKELG-----NYLVVGVHTDEEISKHKGPPVFTQQERYKM 63
+D VH GH LR KE+ + L+ + E P + E
Sbjct: 6 VFDGVHIGHQKVLRTMKEIAFFRKDDSLIYTISYPPEYFLPDFPGLLMTVESRVE 60
>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain,
N-terminal (CoA-binding) domain {Escherichia coli
[TaxId: 562]}
Length = 119
Score = 25.2 bits (55), Expect = 1.3
Identities = 12/41 (29%), Positives = 15/41 (36%)
Query: 27 RQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGI 67
QA G +V GV + + H G PVF G
Sbjct: 24 EQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGA 64
>d1od6a_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase
{Thermus thermophilus [TaxId: 274]}
Length = 160
Score = 25.3 bits (54), Expect = 1.5
Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 15 YDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKM 63
+D + GH + +++A L + V E +G +F+ +ER +
Sbjct: 9 FDPLTNGHLDVIQRASRLFEKVTV---AVLENPSKRGQYLFSAEERLAI 54
>d1o6ba_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase
{Bacillus subtilis [TaxId: 1423]}
Length = 163
Score = 25.4 bits (54), Expect = 1.8
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 15 YDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKWVDEV 73
+D V +GH + +++ + + V V + K V + E + V V
Sbjct: 10 FDPVTYGHLDIIKRGAHIFEQVYVCVLNNSS--KKPLFSVEERCELLREVTKDIPNITV 66
>d1kama_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN)
adenylyltransferase {Bacillus subtilis [TaxId: 1423]}
Length = 189
Score = 24.7 bits (52), Expect = 2.8
Identities = 4/26 (15%), Positives = 7/26 (26%)
Query: 15 YDMVHFGHANNLRQAKELGNYLVVGV 40
+D H GH + +
Sbjct: 11 FDPPHNGHLLMANEVLYQAGLDEIWF 36
>d1r89a3 d.58.16.2 (A:258-437) tRNA nucleotidyltransferase,
C-terminal domain {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 180
Score = 24.3 bits (53), Expect = 3.4
Identities = 3/28 (10%), Positives = 8/28 (28%)
Query: 35 YLVVGVHTDEEISKHKGPPVFTQQERYK 62
+ + + GP ++ K
Sbjct: 73 LFECQIKEISRVFRRMGPQFEDERNVKK 100
>d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic
subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 227
Score = 24.5 bits (52), Expect = 3.8
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 5/42 (11%)
Query: 44 EEISKHKGP-----PVFTQQERYKMVRGIKWVDEVVEGAPYV 80
+E KGP V + MV G +DE + P V
Sbjct: 170 KEFVSTKGPVLLEVEVDKKVPVLPMVAGGSGLDEFINFDPEV 211
>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain,
N-terminal (CoA-binding) domain {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 130
Score = 24.0 bits (52), Expect = 3.8
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 27 RQAKELGNYLVVGVHTDEEISKHKGPPVFTQQ 58
+QA E G LV G + H G PVF
Sbjct: 33 QQALEYGTNLVGGTTPGKGGKTHLGLPVFNTV 64
>d1nxca_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 467
Score = 24.6 bits (53), Expect = 4.1
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 2 ETLNLLATSLQSNYDMVHFGHANNLRQAKELGNYLVVGVHTDEEI 46
E L S Y + G ++A ELG L+ HT I
Sbjct: 105 EVNIRFVGGLLSAYYLS--GEEIFRKKAVELGVKLLPAFHTPSGI 147
>d1qjca_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase
{Escherichia coli [TaxId: 562]}
Length = 157
Score = 23.4 bits (49), Expect = 6.6
Identities = 4/55 (7%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 15 YDMVHFGHANNLRQAKELGNYLVVGVHTDEEISKHKGPPVFTQQERYKMVRGIKW 69
+D + GH + + +A ++ +++++ + + + +
Sbjct: 9 FDPITNGHIDIVTRATQMFDHVILAIAASPSK--KPMFTLEERVALAQQATAHLG 61
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.388
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 398,274
Number of extensions: 16474
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 17
Length of query: 112
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 41
Effective length of database: 1,432,766
Effective search space: 58743406
Effective search space used: 58743406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)