BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11155
(101 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MYP|C Chain C, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3
Angstroms Resolution
pdb|1MYP|D Chain D, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3
Angstroms Resolution
pdb|1MHL|C Chain C, Crystal Structure Of Human Myeloperoxidase Isoform C
Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
pdb|1MHL|D Chain D, Crystal Structure Of Human Myeloperoxidase Isoform C
Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
Length = 466
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 12/66 (18%)
Query: 34 FDGYNPNIAADISNVFATVALRFGHTLINPILTRLNENYTTI---PEVNISWLKWIQPVQ 90
+ YN ++ I+NVF T A R+GHTLI P + RL+ Y + P V +S +
Sbjct: 201 YRSYNDSVDPRIANVF-TNAFRYGHTLIQPFMFRLDNRYQPMEPNPRVPLS--------R 251
Query: 91 MFLSSW 96
+F +SW
Sbjct: 252 VFFASW 257
>pdb|1CXP|C Chain C, Cryogenic Crystal Structure Of Human Myeloperoxidase
Isoform C
pdb|1CXP|D Chain D, Cryogenic Crystal Structure Of Human Myeloperoxidase
Isoform C
pdb|1D2V|C Chain C, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D2V|D Chain D, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D7W|C Chain C, Crystal Structure Of Human Myeloperoxidase Isoform C
Complexed With Cyanide And Bromide At Ph 4.0
pdb|1D7W|D Chain D, Crystal Structure Of Human Myeloperoxidase Isoform C
Complexed With Cyanide And Bromide At Ph 4.0
pdb|1D5L|C Chain C, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D5L|D Chain D, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1DNU|C Chain C, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
Complex
pdb|1DNU|D Chain D, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
Complex
pdb|1DNW|C Chain C, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
pdb|1DNW|D Chain D, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
pdb|4DL1|C Chain C, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|D Chain D, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|G Chain G, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|H Chain H, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|K Chain K, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|L Chain L, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|O Chain O, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|P Chain P, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
Length = 466
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 12/66 (18%)
Query: 34 FDGYNPNIAADISNVFATVALRFGHTLINPILTRLNENYTTI---PEVNISWLKWIQPVQ 90
+ YN ++ I+NVF T A R+GHTLI P + RL+ Y + P V +S +
Sbjct: 201 YRSYNDSVDPRIANVF-TNAFRYGHTLIQPFMFRLDNRYQPMEPNPRVPLS--------R 251
Query: 91 MFLSSW 96
+F +SW
Sbjct: 252 VFFASW 257
>pdb|3F9P|C Chain C, Crystal Structure Of Myeloperoxidase From Human Leukocytes
pdb|3F9P|D Chain D, Crystal Structure Of Myeloperoxidase From Human Leukocytes
pdb|3ZS0|C Chain C, Human Myeloperoxidase Inactivated By Tx2
pdb|3ZS0|D Chain D, Human Myeloperoxidase Inactivated By Tx2
pdb|3ZS1|C Chain C, Human Myeloperoxidase Inactivated By Tx5
pdb|3ZS1|D Chain D, Human Myeloperoxidase Inactivated By Tx5
Length = 467
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 12/66 (18%)
Query: 34 FDGYNPNIAADISNVFATVALRFGHTLINPILTRLNENYTTI---PEVNISWLKWIQPVQ 90
+ YN ++ I+NVF T A R+GHTLI P + RL+ Y + P V +S +
Sbjct: 201 YRSYNDSVDPRIANVF-TNAFRYGHTLIQPFMFRLDNRYQPMEPNPRVPLS--------R 251
Query: 91 MFLSSW 96
+F +SW
Sbjct: 252 VFFASW 257
>pdb|3R5Q|A Chain A, Crystal Structure Of Sheep Lactoperoxidase In Complex With
Tetrahydrofuran At 2.7 A Resolution
Length = 595
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 34 FDGYNPNIAADISNVFATVALRFGHTLINPILTRLNENY 72
+ GYN ++ ISNVF T A RFGH + ++RL+ENY
Sbjct: 328 YQGYNNSVDPRISNVF-TFAFRFGHMEVPSTVSRLDENY 365
>pdb|2IKC|A Chain A, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A
Resolution Reveals The Binding Sites For Formate
pdb|2IKC|B Chain B, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A
Resolution Reveals The Binding Sites For Formate
Length = 595
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 34 FDGYNPNIAADISNVFATVALRFGHTLINPILTRLNENY 72
+ GYN ++ ISNVF T A RFGH + ++RL+ENY
Sbjct: 328 YQGYNNSVDPRISNVF-TFAFRFGHMEVPSTVSRLDENY 365
>pdb|2Z5Z|A Chain A, Crystal Structure Of The Complex Of Buffalo
Lactoperoxidase With Fluoride Ion At 3.5a Resolution
pdb|3FNL|A Chain A, Crystal Structure Of The Complex Of Buffalo
Lactoperoxidase With Salicylhydroxamic Acid At 2.48 A
Resolution
Length = 595
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 34 FDGYNPNIAADISNVFATVALRFGHTLINPILTRLNENY 72
+ GYN ++ ISNVF T A RFGH + ++RL+ENY
Sbjct: 328 YQGYNNSVDPRISNVF-TFAFRFGHMEVPSTVSRLDENY 365
>pdb|2O86|A Chain A, Crystal Structure Of A Ternary Complex Of Buffalo
Lactoperoxidase With Nitrate And Iodide At 2.8 A
Resolution
Length = 595
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 34 FDGYNPNIAADISNVFATVALRFGHTLINPILTRLNENY 72
+ GYN ++ ISNVF T A RFGH + ++RL+ENY
Sbjct: 328 YQGYNNSVDPRISNVF-TFAFRFGHMEVPSTVSRLDENY 365
>pdb|3ERH|A Chain A, First Structural Evidence Of Substrate Specificity In
Mammalian Peroxidases: Crystal Structures Of Substrate
Complexes With Lactoperoxidases From Two Different
Species
pdb|3FAQ|A Chain A, Crystal Struture Of Lactoperoxidase Complex With Cyanide
Length = 595
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 34 FDGYNPNIAADISNVFATVALRFGHTLINPILTRLNENY 72
+ GYN ++ ISNVF T A RFGH + ++RL+ENY
Sbjct: 328 YQGYNNSVDPRISNVF-TFAFRFGHMEVPSTVSRLDENY 365
>pdb|2PT3|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.34 A
Resolution Reveals Multiple Anion Binding Sites
pdb|2PUM|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complex With
Catechol And Iodide At 2.7 A Resolution
pdb|2QPK|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Salicylhydroxamic Acid At 2.34 A Resolution
pdb|2QQT|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Acetyl Salicylic Acid At 2.5 A Resolution
pdb|2QRB|A Chain A, Crystal Structure Of Chloride Saturated Bovine
Lactoperoxidase At 2.5 A Resolution Shows Multiple
Halide Binding Sites
pdb|3BXI|A Chain A, Structure Of The Complex Of Bovine Lactoperoxidase With
Its Catalyzed Product Hypothiocyanate Ion At 2.3a
Resolution
pdb|3ERI|A Chain A, First Structural Evidence Of Substrate Specificity In
Mammalian Peroxidases: Crystal Structures Of Substrate
Complexes With Lactoperoxidases From Two Different
Species
pdb|3GC1|A Chain A, Crystal Structure Of Bovine Lactoperoxidase
pdb|3GCJ|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3GCK|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3GCL|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3I6N|A Chain A, Mode Of Binding Of The Tuberculosis Prodrug Isoniazid To
Peroxidases: Crystal Structure Of Bovine Lactoperoxidase
With Isoniazid At 2.7 Resolution
pdb|3KRQ|A Chain A, Crystal Structure Of The Complex Of Lactoperoxidase With A
Potent Inhibitor Amino-Triazole At 2.2a Resolution
pdb|3NYH|A Chain A, Crystal Structure Of Lactoperoxidase Complexed
Simultaneously With Thiocyanate Ion, Iodide Ion, Bromide
Ion, Chloride Ion Through The Substrate Diffusion
Channel Reveals A Preferential Queue Of The Inorganic
Substrates Towards The Distal Heme Cavity
pdb|3OGW|A Chain A, Structure Of The Complex Of Bovine Lactoperoxidase With
Indomethacin At 1.9a Resolution
pdb|3PY4|A Chain A, Crystal Structure Of Bovine Lactoperoxidase In Complex
With Paracetamol At 2.4a Resolution
pdb|3Q9K|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complexed With
Phenyl Isothiocyanate At 1.7 A Resolution
pdb|3QL6|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Nimesulide At 1.7 A Resolution
pdb|3S4F|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With 1h- Pyrazolo[4,3-C] Pyridine At 1.99 A Resolution
pdb|3R4X|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complexed With
Pyrazine-2- Carboxamide At 2 A Resolution
pdb|3R5O|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With 4- Allyl-2-Methoxyphenol At 2.6 A Resolution
pdb|3TGY|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Ascorbic Acid At 2.35 A Resolution
pdb|3TUW|A Chain A, Crystal Structure Of Lactoperoxidase Complexed With
Pyrazinamide At 2.2a Resolution
pdb|3UBA|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With P- Hydroxycinnamic Acid At 2.6 A Resolution
pdb|3V6Q|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Carbon Monoxide At 2.0 A Resolution
pdb|4GM7|A Chain A, Structure Of Cinnamic Acid Bound Bovine Lactoperoxidase At
2.6a Resolution.
pdb|4GN6|A Chain A, Structure Of Paracetamol Bound Bovine Lactoperoxidase At
2.45a Resolution
Length = 595
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 34 FDGYNPNIAADISNVFATVALRFGHTLINPILTRLNENY 72
+ GYN ++ ISNVF T A RFGH + ++RL+ENY
Sbjct: 328 YQGYNNSVDPRISNVF-TFAFRFGHMEVPSTVSRLDENY 365
>pdb|2IPS|A Chain A, Crystal Structure Of A Ternary Complex Of Bovine
Lactoperoxidase With Thiocyanate And Iodide At 3.1 A
Resolution
pdb|2NQX|A Chain A, Crystal Structure Of Bovine Lactoperoxidase With Iodide
Ions At 2.9a Resolution
Length = 595
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 34 FDGYNPNIAADISNVFATVALRFGHTLINPILTRLNENY 72
+ GYN ++ ISNVF T A RFGH + ++RL+ENY
Sbjct: 328 YQGYNNSVDPRISNVF-TFAFRFGHMEVPSTVSRLDENY 365
>pdb|2GJ1|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.3a
Resolution
Length = 583
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 34 FDGYNPNIAADISNVFATVALRFGHTLINPILTRLNENY 72
+ GYN ++ ISNVF T A RFGH + ++RL+ENY
Sbjct: 316 YQGYNNSVDPRISNVF-TFAFRFGHMEVPSTVSRLDENY 353
>pdb|2GJM|A Chain A, Crystal Structure Of Buffalo Lactoperoxidase At 2.75a
Resolution
Length = 583
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 34 FDGYNPNIAADISNVFATVALRFGHTLINPILTRLNENY 72
+ GYN ++ ISNVF T A RFGH + ++RL+ENY
Sbjct: 316 YQGYNNSVDPRISNVF-TFAFRFGHMEVPSTVSRLDENY 353
>pdb|2R5L|A Chain A, Crystal Structure Of Lactoperoxidase At 2.4a Resolution
pdb|3N8F|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Thiocyanate At 3.2 A Resolution
pdb|3N8F|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Thiocyanate At 3.2 A Resolution
pdb|3NIU|A Chain A, Crystal Structure Of The Complex Of Dimeric Goat
Lactoperoxidase With Diethylene Glycol At 2.9 A
Resolution
pdb|3NIU|B Chain B, Crystal Structure Of The Complex Of Dimeric Goat
Lactoperoxidase With Diethylene Glycol At 2.9 A
Resolution
pdb|3NAK|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Hypothiocyanite At 3.3 A Resolution
pdb|3NAK|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Hypothiocyanite At 3.3 A Resolution
pdb|3QF1|A Chain A, Crystal Structure Of The Complex Of Caprine
Lactoperoxidase With Diethylenediamine At 2.6a
Resolution
pdb|3RKE|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With A
Tightly Bound Inhibitor, 4-Aminophenyl-4h-Imidazole-1-Yl
Methanone At 2.3 A Resolution
pdb|3R55|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Pyrazinamide At 2.1 A Resolution
pdb|3SXV|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Amitrole At 2.1 A Resolution
Length = 595
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 34 FDGYNPNIAADISNVFATVALRFGHTLINPILTRLNENY 72
+ GYN ++ ISNVF T A RFGH + ++RL+ENY
Sbjct: 328 YQGYNNSVDPRISNVF-TFAFRFGHMEVPSTVSRLDENY 365
>pdb|2E9E|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Nitrate At 3.25 A Resolution
pdb|2E9E|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Nitrate At 3.25 A Resolution
pdb|2OJV|A Chain A, Crystal Structure Of A Ternary Complex Of Goat
Lactoperoxidase With Cyanide And Iodide Ions At 2.4 A
Resolution
pdb|2EFB|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Phosphate At 2.94 A Resolution
pdb|2EFB|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Phosphate At 2.94 A Resolution
pdb|2EHA|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With
Formate Anion At 3.3 A Resolution
pdb|2EHA|B Chain B, Crystal Structure Of Goat Lactoperoxidase Complexed With
Formate Anion At 3.3 A Resolution
Length = 595
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 34 FDGYNPNIAADISNVFATVALRFGHTLINPILTRLNENY 72
+ GYN ++ ISNVF T A RFGH + ++RL+ENY
Sbjct: 328 YQGYNNSVDPRISNVF-TFAFRFGHMEVPSTVSRLDENY 365
>pdb|3IZR|O Chain O, Localization Of The Large Subunit Ribosomal Proteins
Into A 5.5 A Cryo-Em Map Of Triticum Aestivum
Translating 80s Ribosome
Length = 144
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 10 QMGEKRHNSSHFGAGSIQEHQKVFFDGYNPNIAADISNVFATVALRFGHTLIN 62
++G+ R + G H ++ FD Y+P F V +R+ H L N
Sbjct: 21 RIGKHRKHPGGRGNAGGMHHHRILFDKYHPGY-------FGKVGMRYFHRLSN 66
>pdb|3IZS|O Chain O, Localization Of The Large Subunit Ribosomal Proteins
Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3U5E|AA Chain a, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome A
pdb|3U5I|AA Chain a, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome B
pdb|4B6A|AA Chain a, Cryo-Em Structure Of The 60s Ribosomal Subunit In
Complex With Arx1 And Rei1
Length = 149
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 12/72 (16%)
Query: 10 QMGEKRHNSSHFGAGSIQEHQKVFFDGYNPNIAADISNVFATVALRFGHT----LINPIL 65
++G+ R + G Q H ++ D Y+P F V +R+ H P+L
Sbjct: 21 RIGKHRKHPGGRGMAGGQHHHRINMDKYHP-------GYFGKVGMRYFHKQQAHFWKPVL 73
Query: 66 TRLNENYTTIPE 77
L++ +T IPE
Sbjct: 74 N-LDKLWTLIPE 84
>pdb|1LYV|A Chain A, High-Resolution Structure Of The Catalytically Inactive
Yersinia Tyrosine Phosphatase C403a Mutant In Complex
With Phosphate
Length = 306
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 11 MGEKRHNSSHFGAGSIQEHQKVFFDGYNPNIAADISNVFATV 52
M E+ H S H GAG + Y P A++S+ T+
Sbjct: 1 MRERPHTSGHHGAGEARATAPSTVSPYGPEARAELSSRLTTL 42
>pdb|3F99|A Chain A, W354f Yersinia Enterocolitica Ptpase Apo Form
pdb|3F9A|A Chain A, W354f Yersinia Enterocolitica Ptpase Complexed With
Tungstate
pdb|3F9B|A Chain A, W354f Yersinia Enterocolitica Ptpase Complexed With
Divanadate
Length = 306
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 11 MGEKRHNSSHFGAGSIQEHQKVFFDGYNPNIAADISNVFATV 52
M E+ H S H GAG + Y P A++S+ T+
Sbjct: 1 MRERPHTSGHHGAGEARATAPSTVSPYGPEARAELSSRLTTL 42
>pdb|1QZ0|A Chain A, Crystal Structure Of The Yersinia Pestis Phosphatase
Yoph In Complex With A Phosphotyrosyl
Mimetic-Containing Hexapeptide
pdb|1QZ0|B Chain B, Crystal Structure Of The Yersinia Pestis Phosphatase
Yoph In Complex With A Phosphotyrosyl
Mimetic-Containing Hexapeptide
pdb|2I42|A Chain A, Crystal Structure Of Yersinia Protein Tyrosine
Phosphatase Complexed With Vanadate, A Transition State
Analogue
pdb|1YTN|A Chain A, Hydrolase
pdb|1YTW|A Chain A, Yersinia Ptpase Complexed With Tungstate
pdb|2Y2F|A Chain A, Crystal Structure Of Yersinia Pestis Yoph In Complex
With An Aminooxy-Containing Platform Compound For
Inhibitor Design
pdb|2YDU|A Chain A, Crystal Structure Of Yoph In Complex With
3-(1,1-Dioxido-3-Oxoisothiazolidin-5-Yl)benzaldeyde
Length = 306
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 11 MGEKRHNSSHFGAGSIQEHQKVFFDGYNPNIAADISNVFATV 52
M E+ H S H GAG + Y P A++S+ T+
Sbjct: 1 MRERPHTSGHHGAGEARATAPSTVSPYGPEARAELSSRLTTL 42
>pdb|3KKC|A Chain A, The Crystal Structure Of Tetr Transcriptional Regulator
From Streptococcus Agalactiae 2603v
pdb|3KKC|B Chain B, The Crystal Structure Of Tetr Transcriptional Regulator
From Streptococcus Agalactiae 2603v
pdb|3KKC|C Chain C, The Crystal Structure Of Tetr Transcriptional Regulator
From Streptococcus Agalactiae 2603v
pdb|3KKC|D Chain D, The Crystal Structure Of Tetr Transcriptional Regulator
From Streptococcus Agalactiae 2603v
Length = 177
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 54 LRFGHTLINPILTRLNENYTTIPEVNISWLKWIQPVQMFLSSWVECMS 101
LRF L + + RL E Y T ++ +LK Q LSS++E +
Sbjct: 111 LRFRSELEHDVYPRLREEYITKVDIPEDFLK-----QFLLSSFIETLK 153
>pdb|3W3S|A Chain A, Crystal Structure Of A. Aeolicus Trnasec In Complex With
M. Kandleri Serrs
Length = 527
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 16/87 (18%)
Query: 12 GEKRHNSSHFGAGSIQEHQKVFFDGYNPNI---------AADISNVFATVALRFGHTLI- 61
GE+ + GS H + F DG+N A + V L H
Sbjct: 439 GERSSEEAWISVGSFNVHGEHFVDGFNVKEKSGRTLFTGCAGLGVTRWVVGLLAQHGFYP 498
Query: 62 ----NPILTRLNENYTTIPEV--NISW 82
PIL R++E + +PEV ++W
Sbjct: 499 YEWPEPILERIDEKFGGLPEVPKTLTW 525
>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within
The Catalytic Domain Of A Hect Ubiquitin Ligase
Length = 429
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 26 IQEHQKVFFDGYNPNIAADISNVF 49
+QE K F DG+N I D+ VF
Sbjct: 276 VQEQFKAFMDGFNELIPEDLVTVF 299
>pdb|1XXV|A Chain A, Yersinia Yoph (Residues 163-468) Binds
Phosphonodifluoromethyl-Phe Containing Hexapeptide At
Two Sites
pdb|1XXV|B Chain B, Yersinia Yoph (Residues 163-468) Binds
Phosphonodifluoromethyl-Phe Containing Hexapeptide At
Two Sites
Length = 306
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 13 EKRHNSSHFGAGSIQEHQKVFFDGYNPNIAADISNVFATV 52
E+ H S H GAG + Y P A++S+ T+
Sbjct: 3 ERPHTSGHHGAGEARATAPSTVSPYGPEARAELSSRLTTL 42
>pdb|3U96|A Chain A, Crystal Structure Of Yophq357f(Catalytic Domain,
Residues 163-468) In Complex With Pncs
pdb|3U96|B Chain B, Crystal Structure Of Yophq357f(Catalytic Domain,
Residues 163-468) In Complex With Pncs
Length = 306
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 13 EKRHNSSHFGAGSIQEHQKVFFDGYNPNIAADISNVFATV 52
E+ H S H GAG + Y P A++S+ T+
Sbjct: 3 ERPHTSGHHGAGEARATAPSTVSPYGPEARAELSSRLTTL 42
>pdb|3BM8|A Chain A, Crystal Structure Of Yoph Mutant D356a Complexed With
Irreversible Inhibitor Pvsn
Length = 305
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 13 EKRHNSSHFGAGSIQEHQKVFFDGYNPNIAADISNVFATV 52
E+ H S H GAG + Y P A++S+ T+
Sbjct: 2 ERPHTSGHHGAGEARATAPSTVSPYGPEARAELSSRLTTL 41
>pdb|1YPT|A Chain A, Crystal Structure Of Yersinia Protein Tyrosine
Phosphatase At 2.5 Angstroms And The Complex With
Tungstate
pdb|1YPT|B Chain B, Crystal Structure Of Yersinia Protein Tyrosine
Phosphatase At 2.5 Angstroms And The Complex With
Tungstate
pdb|3BLU|A Chain A, Crystal Structure Yoph Complexed With Inhibitor Pvs
pdb|3BLT|A Chain A, Crystal Structures Of Yoph Complexed With Pvsn And Pvs,
Inhibitors Of Yoph Which Co-Valent Bind To Cys Of
Active Site
Length = 305
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 13 EKRHNSSHFGAGSIQEHQKVFFDGYNPNIAADISNVFATV 52
E+ H S H GAG + Y P A++S+ T+
Sbjct: 2 ERPHTSGHHGAGEARATAPSTVSPYGPEARAELSSRLTTL 41
>pdb|1XXP|A Chain A, Yersinia Yoph (Residues 163-468) C403s Binds
Phosphotyrosyl Peptide At Two Sites
pdb|1XXP|B Chain B, Yersinia Yoph (Residues 163-468) C403s Binds
Phosphotyrosyl Peptide At Two Sites
Length = 306
Score = 25.8 bits (55), Expect = 6.0, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 13 EKRHNSSHFGAGSIQEHQKVFFDGYNPNIAADISNVFATV 52
E+ H S H GAG + Y P A++S+ T+
Sbjct: 3 ERPHTSGHHGAGEARATAPSTVSPYGPEARAELSSRLTTL 42
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 25.0 bits (53), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query: 7 VTHQMGEKRHNSSH---FGAGSIQEH---QKVFFDGYNPNI 41
VTH+MG RH SSH G I+E ++VF + +P +
Sbjct: 209 VTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPRL 249
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,394,695
Number of Sequences: 62578
Number of extensions: 122079
Number of successful extensions: 316
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 280
Number of HSP's gapped (non-prelim): 29
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)