Query psy11155
Match_columns 101
No_of_seqs 102 out of 594
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 19:23:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11155.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11155hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d2v_C Myeloperoxidase; heme-p 99.5 6E-14 2E-18 114.3 6.1 62 32-94 199-261 (466)
2 3q9k_A Lactoperoxidase, LPO; b 99.4 5E-14 1.7E-18 117.9 4.8 61 32-93 326-387 (595)
3 1q4g_A Prostaglandin G/H synth 98.0 2E-06 6.8E-11 71.3 1.9 45 40-94 341-385 (553)
4 3nt1_A Prostaglandin-endoperox 97.7 1.5E-05 5.2E-10 66.7 3.5 45 40-94 341-385 (587)
5 2o35_A Hypothetical protein DU 21.2 45 0.0015 22.1 1.7 17 40-56 5-21 (105)
6 1gvn_A Epsilon; postsegregatio 16.0 65 0.0022 20.7 1.5 31 40-70 8-39 (90)
7 3fyb_A Protein of unknown func 15.6 56 0.0019 21.6 1.2 16 41-56 5-20 (104)
8 2lch_A Protein OR38; structura 9.7 1.1E+02 0.0038 18.9 1.2 14 50-63 39-52 (113)
9 1c7k_A NCNP, zinc endoprotease 9.6 1.3E+02 0.0043 20.3 1.5 20 46-65 75-94 (132)
10 1t1j_A Hypothetical protein; s 8.0 48 0.0016 22.1 -1.2 32 32-63 15-49 (125)
No 1
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP: a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C* 1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C*
Probab=99.46 E-value=6e-14 Score=114.29 Aligned_cols=62 Identities=29% Similarity=0.527 Sum_probs=54.1
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHHhhhhcccccccCCCCCccc-CCccchhhcccChhhhhh
Q psy11155 32 VFFDGYNPNIAADISNVFATVALRFGHTLINPILTRLNENYTTIP-EVNISWLKWIQPVQMFLS 94 (101)
Q Consensus 32 g~~~gYd~~vdPsIsneFatAAfRfgHSlI~~~i~~~~~~~~~~~-~~~i~L~d~ff~P~~l~~ 94 (101)
|.|.||++++||+|+||| +||||||||||++.+.+++++++... .+.++|++.||+|..++.
T Consensus 199 ~~~~gy~~~v~p~isnEF-~aafRfgHsli~~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~ 261 (466)
T 1d2v_C 199 PTYRSYNDSVDPRIANVF-TNAFRYGHTLIQPFMFRLDNRYQPMEPNPRVPLSRVFFASWRVVL 261 (466)
T ss_dssp CCCCCCCTTSCCSCBHHH-HHHGGGGGGGCCSEEECBCTTSSBCSSCSEEEGGGTTTCHHHHHH
T ss_pred CcccCCCCCCCCchhHHH-HHHHhcccccCchhhccccccccccCCCCceeHHHHhcChHHHhh
Confidence 678999999999999999 99999999999999999998876531 257999999999976654
No 2
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase, phenyl isothiocyanat iodide, PEG, edman reagent; HET: SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A* 2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A* 3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A* 3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...
Probab=99.44 E-value=5e-14 Score=117.92 Aligned_cols=61 Identities=33% Similarity=0.543 Sum_probs=54.1
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHHhhhhcccccccCCCCCccc-CCccchhhcccChhhhh
Q psy11155 32 VFFDGYNPNIAADISNVFATVALRFGHTLINPILTRLNENYTTIP-EVNISWLKWIQPVQMFL 93 (101)
Q Consensus 32 g~~~gYd~~vdPsIsneFatAAfRfgHSlI~~~i~~~~~~~~~~~-~~~i~L~d~ff~P~~l~ 93 (101)
+.|.||+++|||+|+||| +||||||||||++.+.+++++++... .+.++|++.||+|..++
T Consensus 326 ~~~~gY~~~v~p~i~neF-~aafRfgHsli~~~~~~~~~~~~~~~~~~~~~L~~~ff~~~~~~ 387 (595)
T 3q9k_A 326 PPYQGYNNSVDPRISNVF-TFAFRFGHMEVPSTVSRLDENYQPWGPEAELPLHTLFFNTWRII 387 (595)
T ss_dssp CSCCCCCTTSCCCCBTTH-HHHGGGGGGGCCSEEECBCTTSSBCSTTCEEEGGGGBTCCHHHH
T ss_pred CCccCCCCCCCCccHHHH-HHHHHhHHhhCcchhhccCccccccCCCCceeHHHHhcChHHhh
Confidence 567899999999999999 99999999999999999999887642 35799999999998654
No 3
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Probab=97.97 E-value=2e-06 Score=71.30 Aligned_cols=45 Identities=13% Similarity=0.167 Sum_probs=36.6
Q ss_pred CCCCchhHHHHHHHHHHHhhhhcccccccCCCCCcccCCccchhhcccChhhhhh
Q psy11155 40 NIAADISNVFATVALRFGHTLINPILTRLNENYTTIPEVNISWLKWIQPVQMFLS 94 (101)
Q Consensus 40 ~vdPsIsneFatAAfRfgHSlI~~~i~~~~~~~~~~~~~~i~L~d~ff~P~~l~~ 94 (101)
.++|+|+|||++ ||| +||||++.+.+.+ ..+.|.+.||+|..+.+
T Consensus 341 ~~~~~is~EF~~-ayR-~Hslip~~~~~~~--------~~~~l~~~ff~~~~~~~ 385 (553)
T 1q4g_A 341 QYRNRIAMEFNQ-LYH-WHPLMPDSFRVGP--------QDYSYEQFLFNTSMLVD 385 (553)
T ss_dssp CCCCCCBHHHHH-HTC-CGGGSCSSEEETT--------EEECHHHHTTCSSHHHH
T ss_pred ccCcchhHHHHH-Hhc-ccccCCcccccCC--------CcccHHHHhcCchhhhc
Confidence 478899999976 599 8999999887532 36889999999987653
No 4
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...
Probab=97.74 E-value=1.5e-05 Score=66.69 Aligned_cols=45 Identities=16% Similarity=0.246 Sum_probs=36.2
Q ss_pred CCCCchhHHHHHHHHHHHhhhhcccccccCCCCCcccCCccchhhcccChhhhhh
Q psy11155 40 NIAADISNVFATVALRFGHTLINPILTRLNENYTTIPEVNISWLKWIQPVQMFLS 94 (101)
Q Consensus 40 ~vdPsIsneFatAAfRfgHSlI~~~i~~~~~~~~~~~~~~i~L~d~ff~P~~l~~ 94 (101)
.+||+|+|||++| ||+||+|++.+.+.+ +.+.|++.||+|.++.+
T Consensus 341 ~~~~~is~eF~~a--~~~Hslip~~~~~~~--------~~~~l~~~ff~p~~~~~ 385 (587)
T 3nt1_A 341 QYQNRIASEFNTL--YHWHPLLPDTFNIED--------QEYSFKQFLYNNSILLE 385 (587)
T ss_dssp CSCCCCBHHHHHH--TCCGGGSCSSEEETT--------EEECHHHHTTCTHHHHH
T ss_pred CcCchHHHHHHHH--HhccccCCcccccCC--------CcccHHHHhcCccccch
Confidence 4688999999876 469999999887532 46899999999987643
No 5
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=21.18 E-value=45 Score=22.07 Aligned_cols=17 Identities=18% Similarity=0.370 Sum_probs=14.8
Q ss_pred CCCCchhHHHHHHHHHH
Q psy11155 40 NIAADISNVFATVALRF 56 (101)
Q Consensus 40 ~vdPsIsneFatAAfRf 56 (101)
++|+.+-.|..+||||=
T Consensus 5 ~md~~~~~eleAAaFRR 21 (105)
T 2o35_A 5 EISPEQRTAFEAAVFRR 21 (105)
T ss_dssp CSCHHHHHHHHHHHHHH
T ss_pred cccHhHHHHHHHHHHHH
Confidence 47888999999999994
No 6
>1gvn_A Epsilon; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: a.8.2.1 PDB: 3q8x_A*
Probab=16.05 E-value=65 Score=20.73 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=18.6
Q ss_pred CCCCchhHHHHHHHH-HHHhhhhcccccccCC
Q psy11155 40 NIAADISNVFATVAL-RFGHTLINPILTRLNE 70 (101)
Q Consensus 40 ~vdPsIsneFatAAf-RfgHSlI~~~i~~~~~ 70 (101)
+..-.|.|||+++.| |...-.+...+..-|+
T Consensus 8 TfkiEilnEfs~~vy~rvln~Vlnheldk~ds 39 (90)
T 1gvn_A 8 TFEIEIINELSASVYNRVLNYVLNHELNKNDS 39 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCTTCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccchh
Confidence 334468999998887 4444444555544333
No 7
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=15.63 E-value=56 Score=21.55 Aligned_cols=16 Identities=19% Similarity=0.239 Sum_probs=13.7
Q ss_pred CCCchhHHHHHHHHHH
Q psy11155 41 IAADISNVFATVALRF 56 (101)
Q Consensus 41 vdPsIsneFatAAfRf 56 (101)
+|..+-.|..+||||=
T Consensus 5 m~~~t~~eleAAaFRr 20 (104)
T 3fyb_A 5 IDQASKTEMEAAAFRH 20 (104)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH
Confidence 6777888999999994
No 8
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=9.66 E-value=1.1e+02 Score=18.94 Aligned_cols=14 Identities=21% Similarity=0.128 Sum_probs=10.8
Q ss_pred HHHHHHHHhhhhcc
Q psy11155 50 ATVALRFGHTLINP 63 (101)
Q Consensus 50 atAAfRfgHSlI~~ 63 (101)
-.++||..||+=.+
T Consensus 39 ~~~l~R~~HTlKGs 52 (113)
T 2lch_A 39 WNKIYRLVHTMKEI 52 (113)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHH
Confidence 46889999998543
No 9
>1c7k_A NCNP, zinc endoprotease; alpha and beta protein, metalloproteinase, hydrolase; 1.00A {Streptomyces caespitosus} SCOP: d.92.1.1 PDB: 1kuh_A
Probab=9.62 E-value=1.3e+02 Score=20.26 Aligned_cols=20 Identities=25% Similarity=0.105 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHhhhhcccc
Q psy11155 46 SNVFATVALRFGHTLINPIL 65 (101)
Q Consensus 46 sneFatAAfRfgHSlI~~~i 65 (101)
.|-+.++|..|||++=-+..
T Consensus 75 ~~~~~v~aHE~GH~LGL~~~ 94 (132)
T 1c7k_A 75 YDSTRVTAHETGHVLGLPDH 94 (132)
T ss_dssp SCHHHHHHHHHHHHHTCCCC
T ss_pred cCCceEEeeeehhccCCccc
Confidence 45668999999999855443
No 10
>1t1j_A Hypothetical protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.14.2
Probab=8.04 E-value=48 Score=22.14 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=19.5
Q ss_pred CCCCCCCCCC---CCchhHHHHHHHHHHHhhhhcc
Q psy11155 32 VFFDGYNPNI---AADISNVFATVALRFGHTLINP 63 (101)
Q Consensus 32 g~~~gYd~~v---dPsIsneFatAAfRfgHSlI~~ 63 (101)
|+|+|.++++ +..-.+.||..+++-||.-+.+
T Consensus 15 gPysg~~~n~~~~n~~~~~r~A~~l~~~G~ip~~P 49 (125)
T 1t1j_A 15 CPYSHADAEVVEQRFRACNEVAATIVRAGHVVFSQ 49 (125)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEEH
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHCCCeeeCc
Confidence 4567765433 2334556666667888887766
Done!