RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy11155
         (101 letters)



>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase,
           phenyl isothiocyanat iodide, PEG, edman reagent; HET:
           SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A*
           2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A*
           3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A*
           3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...
          Length = 595

 Score = 41.5 bits (96), Expect = 1e-05
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 24  GSIQEHQKVFFDGYNPNIAADISNVFATVALRFGHTLINPILTRLNENYTTIPEVNISWL 83
           GS  +     + GYN ++   ISNVF T A RFGH  +   ++RL+ENY          L
Sbjct: 318 GSEMQKWIPPYQGYNNSVDPRISNVF-TFAFRFGHMEVPSTVSRLDENYQPWGPEAELPL 376

Query: 84  K 84
            
Sbjct: 377 H 377


>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide;
           HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP:
           a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C*
           1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C*
          Length = 466

 Score = 40.6 bits (94), Expect = 2e-05
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 33  FFDGYNPNIAADISNVFATVALRFGHTLINPILTRLNENYTTIPEVNISWLK 84
            +  YN ++   I+NVF   A R+GHTLI P + RL+  Y  +       L 
Sbjct: 200 TYRSYNDSVDPRIANVFTN-AFRYGHTLIQPFMFRLDNRYQPMEPNPRVPLS 250


>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
           cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM;
           1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
           3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
           6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
           3hs6_A* 3hs7_A* 3krk_A* ...
          Length = 587

 Score = 38.2 bits (88), Expect = 1e-04
 Identities = 7/63 (11%), Positives = 18/63 (28%)

Query: 36  GYNPNIAADISNVFATVALRFGHTLINPILTRLNENYTTIPEVNISWLKWIQPVQMFLSS 95
            +N               L   H L+       ++ Y+    +  + +     +  F+ S
Sbjct: 335 LFNQQFQYQNRIASEFNTLYHWHPLLPDTFNIEDQEYSFKQFLYNNSILLEHGLTQFVES 394

Query: 96  WVE 98
           +  
Sbjct: 395 FTR 397


>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
           anti-inflammatory drug, peroxi prostaglandin synthase,
           EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A
           {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
           2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
           2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
           1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
          Length = 553

 Score = 30.0 bits (67), Expect = 0.11
 Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 2/38 (5%)

Query: 36  GYNPNIAADISNVFATVALRFGHTLINPILTRLNENYT 73
           G        I+  F    L   H L+        ++Y+
Sbjct: 337 GAQFQYRNRIAMEFNQ--LYHWHPLMPDSFRVGPQDYS 372


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 26.4 bits (57), Expect = 2.2
 Identities = 15/105 (14%), Positives = 29/105 (27%), Gaps = 21/105 (20%)

Query: 5   QYVTHQMGEKRHNSSHFGAGSIQEHQKVFFD-----------GYNPNIAADISNVFATVA 53
            ++ H +    H         +   + VF D               N +  I N    + 
Sbjct: 475 SHIGHHLKNIEH------PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528

Query: 54  LRFGH-TLINPILTRLNENYTTI---PEVNISWLKWIQPVQMFLS 94
               +    +P   RL           E N+   K+   +++ L 
Sbjct: 529 FYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALM 573


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.134    0.429 

Gapped
Lambda     K      H
   0.267   0.0438    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,584,724
Number of extensions: 78826
Number of successful extensions: 153
Number of sequences better than 10.0: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 8
Length of query: 101
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 34
Effective length of database: 4,831,086
Effective search space: 164256924
Effective search space used: 164256924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.2 bits)