BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11157
(111 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VI10|SMD2_DROME Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila
melanogaster GN=SmD2 PE=3 SV=1
Length = 119
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 83/92 (90%), Positives = 87/92 (94%)
Query: 17 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 76
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE PR GKG
Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 82
Query: 77 KKKSKPVNKDRFISKMFLRGDSVILILKNPLA 108
KKK KPVNKDRFISKMFLRGDSVIL+L+NPLA
Sbjct: 83 KKKVKPVNKDRFISKMFLRGDSVILVLRNPLA 114
>sp|Q18786|SMD2_CAEEL Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis
elegans GN=snr-4 PE=1 SV=1
Length = 118
Score = 149 bits (376), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 84/104 (80%), Positives = 93/104 (89%), Gaps = 1/104 (0%)
Query: 5 AEDPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 64
AE+ +E+EE F GPLSILT+SVK+N QVLINCRNNKKLLGRVKAFDRHCNMVLENVK
Sbjct: 13 AEELAAKEDEE-FNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 71
Query: 65 EMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPLA 108
EMWTE P+ GKGKKK+K V KDRFISKMFLRGDSVIL++KNPLA
Sbjct: 72 EMWTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNPLA 115
>sp|Q54NC5|SMD2_DICDI Probable small nuclear ribonucleoprotein Sm D2 OS=Dictyostelium
discoideum GN=snrpd2 PE=3 SV=1
Length = 112
Score = 147 bits (370), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 76/97 (78%), Positives = 86/97 (88%)
Query: 12 EEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHP 71
E++ + GPLSIL DSV +NTQVLIN RNNKKLLGRV+AFDRHCNMVLENVKE+WTE P
Sbjct: 10 EDKPDDSNGPLSILMDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNMVLENVKEIWTEVP 69
Query: 72 RAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPLA 108
+ KGKKK+KP+NKDRFISKMFLRGDSVIL+LKNPL
Sbjct: 70 KTAKGKKKAKPINKDRFISKMFLRGDSVILVLKNPLG 106
>sp|P62317|SMD2_MOUSE Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus GN=Snrpd2
PE=2 SV=1
Length = 118
Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/95 (85%), Positives = 89/95 (93%)
Query: 17 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 76
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 77 KKKSKPVNKDRFISKMFLRGDSVILILKNPLALNK 111
KKKSKPVNKDR+ISKMFLRGDSVI++L+NPL K
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNPLIAGK 118
>sp|P62316|SMD2_HUMAN Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens GN=SNRPD2
PE=1 SV=1
Length = 118
Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/95 (85%), Positives = 89/95 (93%)
Query: 17 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 76
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 77 KKKSKPVNKDRFISKMFLRGDSVILILKNPLALNK 111
KKKSKPVNKDR+ISKMFLRGDSVI++L+NPL K
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNPLIAGK 118
>sp|Q3SZF8|SMD2_BOVIN Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus GN=SNRPD2 PE=3
SV=1
Length = 118
Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/95 (85%), Positives = 89/95 (93%)
Query: 17 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 76
F TGPLS+LT SVK+NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE P++GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 77 KKKSKPVNKDRFISKMFLRGDSVILILKNPLALNK 111
KKKSKPVNKDR+ISKMFLRGDSVI++L+NPL K
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNPLIAGK 118
>sp|O14036|SMD2_SCHPO Small nuclear ribonucleoprotein Sm D2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=smd2 PE=1 SV=1
Length = 115
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/96 (69%), Positives = 77/96 (80%), Gaps = 1/96 (1%)
Query: 13 EEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 72
EE F+ GPLS+L +VK++ QVLINCRNNKKLL RVKAFDRH NMVLENVKEMWTE R
Sbjct: 21 EEYEFSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKR 80
Query: 73 AGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPLA 108
G KK K +NKDRFISKMFLRGD V+L+++ P A
Sbjct: 81 TASG-KKGKAINKDRFISKMFLRGDGVVLVVRIPSA 115
>sp|Q06217|SMD2_YEAST Small nuclear ribonucleoprotein Sm D2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SMD2 PE=1 SV=2
Length = 110
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 68/88 (77%), Gaps = 7/88 (7%)
Query: 20 GPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKK 79
GP+S++ D++ T V+I+ RNN K++ RVKAFDRHCNMVLENVKE+WTE KK
Sbjct: 29 GPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE-------KKG 81
Query: 80 SKPVNKDRFISKMFLRGDSVILILKNPL 107
+N++RFISK+FLRGDSVI++LK P+
Sbjct: 82 KNVINRERFISKLFLRGDSVIVVLKTPV 109
>sp|P62311|LSM3_MOUSE U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus GN=Lsm3
PE=3 SV=2
Length = 102
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 56/98 (57%), Gaps = 4/98 (4%)
Query: 5 AEDPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 64
A+D QQ+ + PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+
Sbjct: 2 ADDVDQQQTTNTVEE-PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVE 58
Query: 65 EMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 102
E T + ++ K R I +F+RGD V+L+
Sbjct: 59 ETVTTIEIDEETYEEIYKSTK-RNIPMLFVRGDGVVLV 95
>sp|P62310|LSM3_HUMAN U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3
PE=1 SV=2
Length = 102
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 56/98 (57%), Gaps = 4/98 (4%)
Query: 5 AEDPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 64
A+D QQ+ + PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+
Sbjct: 2 ADDVDQQQTTNTVEE-PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVE 58
Query: 65 EMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 102
E T + ++ K R I +F+RGD V+L+
Sbjct: 59 ETVTTIEIDEETYEEIYKSTK-RNIPMLFVRGDGVVLV 95
>sp|Q32PE9|LSM3_BOVIN U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus GN=LSM3 PE=3
SV=3
Length = 102
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 56/98 (57%), Gaps = 4/98 (4%)
Query: 5 AEDPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 64
A+D QQ+ + PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+
Sbjct: 2 ADDVDQQQTTNTVEE-PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVE 58
Query: 65 EMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 102
E T + ++ K R I +F+RGD V+L+
Sbjct: 59 ETVTTIEIDEETYEEIYKSTK-RNIPMLFVRGDGVVLV 95
>sp|Q9Y7M4|LSM3_SCHPO Probable U6 snRNA-associated Sm-like protein LSm3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=lsm3 PE=1 SV=2
Length = 93
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 35 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 94
V + R +++L GR+ A+D H NMVL + +E+ T K K+ + + +F+
Sbjct: 22 VYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHY-EMLFV 80
Query: 95 RGDSVILI 102
RGDSVILI
Sbjct: 81 RGDSVILI 88
>sp|Q1ZXK3|LSM3_DICDI Probable U6 snRNA-associated Sm-like protein LSm3 OS=Dictyostelium
discoideum GN=lsm3 PE=3 SV=1
Length = 97
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 7/91 (7%)
Query: 14 EESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRA 73
EE PL ++ S+ + ++ + R +++L G++ A+D+H NM+L +V+E
Sbjct: 5 EEGTVEEPLDLIRLSL--DERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIK---VV 59
Query: 74 GKGKKKSKPV--NKDRFISKMFLRGDSVILI 102
K ++ + + N R I +F+RGD VILI
Sbjct: 60 EKDEETDEEIIRNIKRNIKMLFVRGDGVILI 90
>sp|Q54HH8|SMDL_DICDI Small nuclear ribonucleoprotein Sm D-like protein OS=Dictyostelium
discoideum GN=DDB_G0289453 PE=3 SV=1
Length = 257
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Query: 17 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVK----AFDRHCNMVLENVKEMWTEHPR 72
F GPLS+L +++ +++ + R + G + AFD+H N++L +V+E +
Sbjct: 162 FTDGPLSLLKRALESKSKIKVMIRGTNCIRGYCRGYIIAFDKHMNIILRDVEEEYDLLKS 221
Query: 73 AGKGKKKSKPVNK--DRFISKMFLRGDSVILIL 103
+ +++P+ R+ ++F++GD+V+ ++
Sbjct: 222 LPSTRNQNQPIQPKIKRYYGQLFIKGDTVVSVI 254
>sp|Q29329|SMD2_PIG Small nuclear ribonucleoprotein Sm D2 (Fragment) OS=Sus scrofa
GN=SNRPD2 PE=3 SV=1
Length = 50
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 20/27 (74%)
Query: 17 FATGPLSILTDSVKHNTQVLINCRNNK 43
F TGPLS+ T S K TQVLINCRN K
Sbjct: 24 FNTGPLSVXTQSXKTXTQVLINCRNTK 50
>sp|P57743|LSM3_YEAST U6 snRNA-associated Sm-like protein LSm3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM3 PE=1
SV=1
Length = 89
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 21 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 80
PL +L + + +V I R + L+G ++AFD HCN+VL + E +
Sbjct: 4 PLDLL--KLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQ-------LNNE 54
Query: 81 KPVNKDRFISKMFLRGDSVILI 102
+ +R +F+RGD+V LI
Sbjct: 55 ELSESERRCEMVFIRGDTVTLI 76
>sp|Q8PZZ9|RUXX_METMA Putative snRNP Sm-like protein OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=MM_0339 PE=3 SV=1
Length = 72
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 16/86 (18%)
Query: 17 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 76
A PL IL +++ +T V++ + ++ G +K +D H N+VL+N +E+ +G
Sbjct: 1 MANRPLDILNNAL--DTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELR-------EG 51
Query: 77 KKKSKPVNKDRFISKMFLRGDSVILI 102
+ SK S + +RGD+V+ +
Sbjct: 52 EVVSK-------FSSVVIRGDNVVYV 70
>sp|Q12U30|RUXX_METBU Putative snRNP Sm-like protein OS=Methanococcoides burtonii (strain
DSM 6242) GN=Mbur_2181 PE=3 SV=1
Length = 72
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 16/82 (19%)
Query: 21 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 80
PL IL D++ NT V++ + ++ G ++ +D H N+VL+ +E+ K
Sbjct: 5 PLDILNDAL--NTSVIVRLKGAREFRGVLQGYDVHMNLVLDEAEEL-----------KDG 51
Query: 81 KPVNKDRFISKMFLRGDSVILI 102
+ V K I + +RGD+V+ +
Sbjct: 52 EIVRK---IGGVVIRGDNVVYV 70
>sp|Q8TL47|RUXX_METAC Putative snRNP Sm-like protein OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
GN=MA_3195 PE=3 SV=1
Length = 72
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 16/86 (18%)
Query: 17 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 76
A PL IL +++ +T V++ + ++ G +K +D H N+VL+N +E+ R G+
Sbjct: 1 MANRPLDILNNAL--DTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEEL-----RDGEV 53
Query: 77 KKKSKPVNKDRFISKMFLRGDSVILI 102
K S + +RGD+V+ +
Sbjct: 54 VSK---------FSSVVIRGDNVVYV 70
>sp|Q0W8R9|RUXX_UNCMA Putative snRNP Sm-like protein OS=Uncultured methanogenic archaeon
RC-I GN=UNCMA_29510 PE=3 SV=1
Length = 72
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 42/82 (51%), Gaps = 16/82 (19%)
Query: 21 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 80
PL +L +++ N+ V++ + ++ G ++ +D H N+VL+N +E+
Sbjct: 5 PLDVLNEAL--NSPVIVRLKGGREFRGELQGYDMHMNLVLDNAEEL-------------- 48
Query: 81 KPVNKDRFISKMFLRGDSVILI 102
K R + + +RGD+V+ +
Sbjct: 49 KENEASRKLGTIIVRGDTVVYV 70
>sp|Q97BU5|RUXX_THEVO Putative snRNP Sm-like protein OS=Thermoplasma volcanium (strain
ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0360 PE=3 SV=2
Length = 83
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 16/84 (19%)
Query: 19 TGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKK 78
T P+ +L +++ N VLI+ + N++ G ++ +D + N+VL+N E+
Sbjct: 8 TKPMDVLKNALSRN--VLIDVKGNREYSGILEGYDVYMNVVLQNASEIINGE-------- 57
Query: 79 KSKPVNKDRFISKMFLRGDSVILI 102
NK F ++ +RGD+VI +
Sbjct: 58 -----NKGVF-DRILVRGDNVIFV 75
>sp|Q465S1|RUXX_METBF Putative snRNP Sm-like protein OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A3500 PE=3 SV=1
Length = 72
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 16/86 (18%)
Query: 17 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 76
A PL IL +++ +T V++ + ++ G +K +D H N+VL+N +E+ +G
Sbjct: 1 MANRPLDILNNAL--DTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELR-------EG 51
Query: 77 KKKSKPVNKDRFISKMFLRGDSVILI 102
+ SK + +RGD+V+ +
Sbjct: 52 EVVSK-------FGSVVIRGDNVVYV 70
>sp|P57670|RUXX_THEAC Putative snRNP Sm-like protein OS=Thermoplasma acidophilum (strain
ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta1240 PE=3 SV=1
Length = 83
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 16/82 (19%)
Query: 21 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 80
P+ +L ++ N VLI+ + N++ G ++ +D + N+VL+N E+
Sbjct: 10 PMDVLKSALSRN--VLIDVKGNREYSGILEGYDVYMNIVLQNASEIINGE---------- 57
Query: 81 KPVNKDRFISKMFLRGDSVILI 102
NK + ++ +RGD+VI +
Sbjct: 58 ---NKGVY-DRVLVRGDNVIFV 75
>sp|P91918|RSMB_CAEEL Probable small nuclear ribonucleoprotein-associated protein B
OS=Caenorhabditis elegans GN=snr-2 PE=3 SV=1
Length = 160
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 10/72 (13%)
Query: 32 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGK---GKKKSKPVNKDRF 88
N ++ I ++ + +G KAFD+H N++L +E P+AGK G++K R
Sbjct: 14 NYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTDGEEK-------RI 66
Query: 89 ISKMFLRGDSVI 100
+ + +RG+ ++
Sbjct: 67 LGLVLVRGEHIV 78
>sp|O26745|RUXX_METTH Putative snRNP Sm-like protein OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_649 PE=1 SV=1
Length = 81
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 16/82 (19%)
Query: 21 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 80
PL L +S+ N+ V+I + +++ G +K+FD H N+VL + +E+ G+ ++
Sbjct: 14 PLDALGNSL--NSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEEL-----EDGEVTRR- 65
Query: 81 KPVNKDRFISKMFLRGDSVILI 102
+ + +RGD+++ I
Sbjct: 66 --------LGTVLIRGDNIVYI 79
>sp|O29386|RUXX_ARCFU Putative snRNP Sm-like protein OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_0875 PE=1 SV=1
Length = 77
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 16/86 (18%)
Query: 21 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 80
PL +L S+K + V++ + ++ G + +D H N+VL + +E+ +
Sbjct: 5 PLDVLNRSLK--SPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEI-----------QNG 51
Query: 81 KPVNKDRFISKMFLRGDSVILILKNP 106
+ V K + + +RGD+V+ + P
Sbjct: 52 EVVRK---VGSVVIRGDTVVFVSPAP 74
>sp|Q9YEQ5|RUXX_AERPE Putative snRNP Sm-like protein OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=APE_0525a PE=3 SV=1
Length = 77
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 15/71 (21%)
Query: 32 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 91
+T VL+ ++ ++ G +K +D+H N++L + +E+ R +
Sbjct: 18 DTPVLVKLKSGLRIKGVLKTYDQHLNIILGDAEEIGE---------------TSIRRLGL 62
Query: 92 MFLRGDSVILI 102
+RGDSV++I
Sbjct: 63 TLVRGDSVVVI 73
>sp|P17136|RSMB_RAT Small nuclear ribonucleoprotein-associated protein B (Fragment)
OS=Rattus norvegicus GN=Snrpb PE=2 SV=1
Length = 214
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 40 RNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSV 99
+N + +G KAFD+H N++L + E P+ K ++ + R + + LRG+++
Sbjct: 5 QNGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAER----EEKRVLGLVLLRGENL 60
Query: 100 I 100
+
Sbjct: 61 V 61
>sp|Q54W83|LSM1_DICDI Probable U6 snRNA-associated Sm-like protein LSm1 OS=Dictyostelium
discoideum GN=lsm1 PE=3 SV=1
Length = 129
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 39/71 (54%), Gaps = 11/71 (15%)
Query: 32 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 91
+ ++++ R+ +K +G ++ FD+ N+VL++ E R G S D+ +
Sbjct: 10 DKKLIVVLRDGRKFIGIMRTFDQFANIVLQDTIE------RIYVGDCYS-----DKNLGL 58
Query: 92 MFLRGDSVILI 102
F+RGD+V+++
Sbjct: 59 FFIRGDNVVIL 69
>sp|Q05856|RSMB_DROME Small nuclear ribonucleoprotein-associated protein B OS=Drosophila
melanogaster GN=SmB PE=1 SV=1
Length = 199
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Query: 29 VKH-NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKD- 86
++H N +V I ++++ +G KAFD+H N++L + +E R + K P ++
Sbjct: 10 IQHLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEF-----RKIRSKNSKVPEREEK 64
Query: 87 RFISKMFLRGDSVI 100
R + + LRG++++
Sbjct: 65 RVLGFVLLRGENIV 78
>sp|P24715|RUXG_MEDSA Probable small nuclear ribonucleoprotein G OS=Medicago sativa
GN=C29 PE=3 SV=1
Length = 81
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 15/69 (21%)
Query: 34 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMF 93
Q+ IN + N+ ++G ++ FD+ N+V++N E+ G +K+ I +
Sbjct: 17 QLQINLKANRMIVGTLRGFDQFMNLVVDNTVEV--------NGNEKND-------IGMVV 61
Query: 94 LRGDSVILI 102
+RG+SV+ +
Sbjct: 62 IRGNSVVTV 70
>sp|Q9TU66|RSMB_MONDO Small nuclear ribonucleoprotein-associated protein B'
OS=Monodelphis domestica GN=SNRPB PE=2 SV=1
Length = 240
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 10/70 (14%)
Query: 37 INCR------NNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFIS 90
I+CR + + +G KAFD+H N++L + E P+ K ++ + R +
Sbjct: 13 IDCRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAER----EEKRVLG 68
Query: 91 KMFLRGDSVI 100
+ LRG++++
Sbjct: 69 LVLLRGENLV 78
>sp|P40089|LSM5_YEAST U6 snRNA-associated Sm-like protein LSm5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM5 PE=1
SV=1
Length = 93
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 21 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPR 72
PL ++ ++ N +VLI ++N++ G + FD N++LE+ E W P
Sbjct: 8 PLEVIDKTI--NQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVE-WLIDPE 56
>sp|Q9NR34|MA1C1_HUMAN Mannosyl-oligosaccharide 1,2-alpha-mannosidase IC OS=Homo sapiens
GN=MAN1C1 PE=2 SV=1
Length = 630
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 61 ENVKEM----WTEHPRAGKGKKKSKPVNKDRFISKMF--LRGDSVI 100
E +KEM W + R GK + +P+ KD + MF L G +VI
Sbjct: 176 EKIKEMMQFAWQSYKRYAMGKNELRPLTKDGYEGNMFGGLSGATVI 221
>sp|Q55A45|RSMB_DICDI Small nuclear ribonucleoprotein-associated protein B
OS=Dictyostelium discoideum GN=snrpb PE=3 SV=1
Length = 274
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 32 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 91
N ++ + ++ + ++GR AFD+H N+V+ + +E + + GK ++ K R +
Sbjct: 15 NYRMRVTIQDGRVIVGRFLAFDKHMNVVICDAEE-FRRIRQKGKEDREEK-----RTLGM 68
Query: 92 MFLRGDSVI 100
+ +RG++V+
Sbjct: 69 ILIRGETVV 77
>sp|P27048|RSMB_MOUSE Small nuclear ribonucleoprotein-associated protein B OS=Mus
musculus GN=Snrpb PE=1 SV=1
Length = 231
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 40 RNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSV 99
++ + +G KAFD+H N++L + E P+ K ++ + R + + LRG+++
Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAER----EEKRVLGLVLLRGENL 77
Query: 100 I 100
+
Sbjct: 78 V 78
>sp|P63164|RSMN_RAT Small nuclear ribonucleoprotein-associated protein N OS=Rattus
norvegicus GN=Snrpn PE=2 SV=1
Length = 240
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 40 RNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSV 99
++ + +G KAFD+H N++L + E P+ K ++ + R + + LRG+++
Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPER----EEKRVLGLVLLRGENL 77
Query: 100 I 100
+
Sbjct: 78 V 78
>sp|Q5R6I0|RSMN_PONAB Small nuclear ribonucleoprotein-associated protein N OS=Pongo
abelii GN=SNRPN PE=2 SV=1
Length = 240
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 40 RNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSV 99
++ + +G KAFD+H N++L + E P+ K ++ + R + + LRG+++
Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPER----EEKRVLGLVLLRGENL 77
Query: 100 I 100
+
Sbjct: 78 V 78
>sp|P63163|RSMN_MOUSE Small nuclear ribonucleoprotein-associated protein N OS=Mus
musculus GN=Snrpn PE=2 SV=1
Length = 240
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 40 RNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSV 99
++ + +G KAFD+H N++L + E P+ K ++ + R + + LRG+++
Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPER----EEKRVLGLVLLRGENL 77
Query: 100 I 100
+
Sbjct: 78 V 78
>sp|Q60HD3|RSMN_MACFA Small nuclear ribonucleoprotein-associated protein N OS=Macaca
fascicularis GN=SNRPN PE=2 SV=1
Length = 240
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 40 RNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSV 99
++ + +G KAFD+H N++L + E P+ K ++ + R + + LRG+++
Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPER----EEKRVLGLVLLRGENL 77
Query: 100 I 100
+
Sbjct: 78 V 78
>sp|P63162|RSMN_HUMAN Small nuclear ribonucleoprotein-associated protein N OS=Homo
sapiens GN=SNRPN PE=1 SV=1
Length = 240
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 40 RNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSV 99
++ + +G KAFD+H N++L + E P+ K ++ + R + + LRG+++
Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPER----EEKRVLGLVLLRGENL 77
Query: 100 I 100
+
Sbjct: 78 V 78
>sp|C6A1T2|RUXX_THESM Putative snRNP Sm-like protein OS=Thermococcus sibiricus (strain MM
739 / DSM 12597) GN=TSIB_0511 PE=3 SV=1
Length = 76
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 16/86 (18%)
Query: 17 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG 76
A PL ++ S+ + +VL+ + + G++ +D H N+VL + + + P+ G
Sbjct: 1 MAERPLDVIHKSL--DKEVLVILKRGAEYRGKLIGYDIHLNVVLADAQLIENGEPKKSYG 58
Query: 77 KKKSKPVNKDRFISKMFLRGDSVILI 102
K+ +RGD+V+ I
Sbjct: 59 --------------KIVIRGDNVLAI 70
>sp|P14678|RSMB_HUMAN Small nuclear ribonucleoprotein-associated proteins B and B'
OS=Homo sapiens GN=SNRPB PE=1 SV=2
Length = 240
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 40 RNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSV 99
++ + +G KAFD+H N++L + E P+ K ++ + R + + LRG+++
Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAER----EEKRVLGLVLLRGENL 77
Query: 100 I 100
+
Sbjct: 78 V 78
>sp|Q9TU67|RSMB_ERIEU Small nuclear ribonucleoprotein-associated protein B' OS=Erinaceus
europaeus GN=SNRPB PE=2 SV=1
Length = 240
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 40 RNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSV 99
++ + +G KAFD+H N++L + E P+ K ++ + R + + LRG+++
Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAER----EEKRVLGLVLLRGENL 77
Query: 100 I 100
+
Sbjct: 78 V 78
>sp|Q9PV94|RSMB_CHICK Small nuclear ribonucleoprotein-associated protein B' OS=Gallus
gallus GN=SNRPB PE=2 SV=1
Length = 240
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 40 RNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSV 99
++ + +G KAFD+H N++L + E P+ K ++ + R + + LRG+++
Sbjct: 22 QDGRVFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPER----EEKRVLGLVLLRGENL 77
Query: 100 I 100
+
Sbjct: 78 V 78
>sp|P40204|RUXG_YEAST Small nuclear ribonucleoprotein G OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SMX2 PE=1 SV=1
Length = 77
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 11/67 (16%)
Query: 34 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMF 93
++L+N ++K+ G ++ +D N+VL++ E+ E P N + +
Sbjct: 14 KILLNINGSRKVAGILRGYDIFLNVVLDDAMEINGE-----------DPANNHQLGLQTV 62
Query: 94 LRGDSVI 100
+RG+S+I
Sbjct: 63 IRGNSII 69
>sp|Q17QN3|RSMN_BOVIN Small nuclear ribonucleoprotein-associated protein N OS=Bos taurus
GN=SNRPN PE=2 SV=1
Length = 240
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 40 RNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSV 99
++ + +G KAFD+H N++L + E P+ K ++ + R + + LRG+++
Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPER----EEKRVLGLVLLRGENL 77
Query: 100 I 100
+
Sbjct: 78 V 78
>sp|Q58DW4|RSMB_BOVIN Small nuclear ribonucleoprotein-associated protein B' OS=Bos taurus
GN=SNRPB PE=2 SV=1
Length = 240
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 40 RNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSV 99
++ + +G KAFD+H N++L + E P+ K ++ + R + + LRG+++
Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAER----EEKRVLGLVLLRGENL 77
Query: 100 I 100
+
Sbjct: 78 V 78
>sp|Q55EX5|LSM5_DICDI Probable U6 snRNA-associated Sm-like protein LSm5 OS=Dictyostelium
discoideum GN=lsm5 PE=3 SV=1
Length = 97
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
Query: 21 PLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKS 80
PL ++ + +++ I +N+K+ +G + FD + N+ L++V TE+ +G K
Sbjct: 18 PLELIEKCI--GSRIWIAMKNDKEFVGTLLGFDAYVNIFLKDV----TEYEYTPEGLKTV 71
Query: 81 KPVNKDRFISKMFLRGDSVILIL 103
K + + L G+ V L++
Sbjct: 72 K-------LDNILLNGNHVCLLV 87
>sp|Q5R628|LSM5_PONAB U6 snRNA-associated Sm-like protein LSm5 OS=Pongo abelii GN=LSM5
PE=3 SV=3
Length = 91
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 41/72 (56%), Gaps = 11/72 (15%)
Query: 32 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 91
+++ I +++K+++G + FD NMVLE+V TE +G++ +K + +
Sbjct: 23 GSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDV----TEFEITPEGRRITK-------LDQ 71
Query: 92 MFLRGDSVILIL 103
+ L G+++ +++
Sbjct: 72 ILLNGNNITMLV 83
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,891,794
Number of Sequences: 539616
Number of extensions: 1482250
Number of successful extensions: 3928
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 3884
Number of HSP's gapped (non-prelim): 72
length of query: 111
length of database: 191,569,459
effective HSP length: 79
effective length of query: 32
effective length of database: 148,939,795
effective search space: 4766073440
effective search space used: 4766073440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)