Query psy11157
Match_columns 111
No_of_seqs 120 out of 1034
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 19:26:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11157.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11157hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b34_B Protein (small nuclear 100.0 1.8E-30 6.2E-35 178.5 9.3 109 3-111 10-118 (118)
2 4emg_A Probable U6 snRNA-assoc 99.9 4.9E-25 1.7E-29 146.0 9.8 88 16-106 5-92 (93)
3 1i4k_A Putative snRNP SM-like 99.9 9.6E-25 3.3E-29 139.2 9.7 75 18-108 2-76 (77)
4 1h64_1 SnRNP SM-like protein; 99.9 1.2E-24 3.9E-29 138.4 9.8 73 18-106 2-74 (75)
5 1th7_A SnRNP-2, small nuclear 99.9 8.4E-25 2.9E-29 141.0 8.4 78 14-107 3-80 (81)
6 4emk_A U6 snRNA-associated SM- 99.9 2.7E-24 9.1E-29 142.9 10.6 76 16-106 16-91 (94)
7 3bw1_A SMX4 protein, U6 snRNA- 99.9 3.3E-24 1.1E-28 142.6 10.5 84 16-108 6-89 (96)
8 1ljo_A Archaeal SM-like protei 99.9 4.2E-24 1.4E-28 136.5 9.7 73 18-106 3-76 (77)
9 3s6n_E Small nuclear ribonucle 99.9 1.4E-24 4.8E-29 143.7 7.5 77 16-107 12-92 (92)
10 4emk_B U6 snRNA-associated SM- 99.9 1.8E-24 6.2E-29 137.7 7.4 73 18-106 2-74 (75)
11 1i8f_A Putative snRNP SM-like 99.9 8.4E-24 2.9E-28 136.4 9.8 73 17-106 8-80 (81)
12 1mgq_A SM-like protein; LSM, R 99.9 9.3E-24 3.2E-28 136.9 9.4 72 17-104 12-83 (83)
13 3s6n_F Small nuclear ribonucle 99.9 1.3E-23 4.3E-28 137.3 10.1 75 18-108 4-78 (86)
14 1d3b_A Protein (small nuclear 99.9 2.5E-23 8.6E-28 132.7 9.7 73 18-106 3-75 (75)
15 1n9r_A SMF, small nuclear ribo 99.9 1.7E-23 5.8E-28 138.6 8.4 76 16-107 17-93 (93)
16 1d3b_B Protein (small nuclear 99.9 1.2E-23 4.2E-28 138.0 6.5 84 18-107 2-85 (91)
17 2fwk_A U6 snRNA-associated SM- 99.9 1.4E-23 4.8E-28 144.7 6.6 90 17-108 25-115 (121)
18 3s6n_G Small nuclear ribonucle 99.9 3.5E-23 1.2E-27 132.1 7.8 73 19-107 3-75 (76)
19 4emh_A Probable U6 snRNA-assoc 99.9 1.1E-22 3.7E-27 137.6 8.2 77 18-109 14-90 (105)
20 4emk_C U6 snRNA-associated SM- 99.9 2.4E-22 8.1E-27 137.4 9.0 83 17-108 20-102 (113)
21 1b34_A Protein (small nuclear 99.9 5.1E-22 1.7E-26 136.6 9.0 74 19-108 1-74 (119)
22 3pgw_B SM B; protein-RNA compl 99.9 1.6E-21 5.4E-26 147.0 10.7 82 18-105 2-83 (231)
23 2y9a_D Small nuclear ribonucle 99.8 6.8E-21 2.3E-25 132.4 9.1 75 18-108 3-77 (126)
24 1m5q_A SMAP3, small nuclear ri 99.8 2.1E-19 7.3E-24 125.4 7.9 66 23-108 3-68 (130)
25 1y96_A Gemin6, SIP2, GEM-assoc 98.3 5.5E-06 1.9E-10 53.7 8.3 64 18-104 6-70 (86)
26 1u1s_A HFQ protein; SM-like ba 97.5 0.00016 5.5E-09 46.4 4.8 38 23-60 10-47 (82)
27 3ahu_A Protein HFQ; SM-like mo 97.5 0.00013 4.3E-09 46.5 4.1 37 24-60 15-51 (78)
28 2ylb_A Protein HFQ; RNA-bindin 97.4 0.00019 6.4E-09 45.2 4.1 38 23-60 12-49 (74)
29 1kq1_A HFQ, HOST factor for Q 97.4 0.00023 8E-09 45.1 4.5 40 23-62 10-49 (77)
30 2qtx_A Uncharacterized protein 97.3 0.00017 5.9E-09 45.1 3.6 39 24-62 17-55 (71)
31 3sb2_A Protein HFQ; SM-like, R 97.3 0.00031 1.1E-08 44.7 4.8 37 23-59 11-47 (79)
32 2y90_A Protein HFQ; RNA-bindin 97.2 0.00051 1.8E-08 45.8 4.8 38 23-60 12-49 (104)
33 3hfo_A SSR3341 protein; HFQ, S 95.9 0.015 5.2E-07 36.1 4.9 41 20-60 8-49 (70)
34 3hfn_A ASL2047 protein; HFQ, S 95.4 0.037 1.3E-06 34.5 5.3 39 22-60 13-51 (72)
35 2vxe_A CG10686-PA; EDC3, CAR-1 94.1 0.69 2.4E-05 29.7 9.9 71 32-107 13-84 (88)
36 1ycy_A Conserved hypothetical 93.1 0.47 1.6E-05 28.9 6.5 59 24-103 10-68 (71)
37 2fb7_A SM-like protein, LSM-14 92.6 0.89 3E-05 29.6 7.7 74 25-105 14-88 (95)
38 1y96_B Gemin7, SIP3, GEM-assoc 91.0 0.92 3.1E-05 29.0 6.3 63 22-105 21-84 (85)
39 4a53_A EDC3; RNA binding prote 89.1 0.63 2.2E-05 31.7 4.6 36 26-64 8-45 (125)
40 2vc8_A Enhancer of mRNA-decapp 84.0 1.7 5.9E-05 27.6 4.3 37 26-64 5-43 (84)
41 3rux_A BIRA bifunctional prote 83.1 2.1 7.3E-05 32.0 5.3 32 31-62 223-254 (270)
42 1ib8_A Conserved protein SP14. 81.7 1.6 5.3E-05 30.6 3.9 29 25-55 99-131 (164)
43 2e12_A SM-like motif, hypothet 72.8 5.8 0.0002 25.6 4.3 25 25-49 21-45 (101)
44 2eay_A Biotin [acetyl-COA-carb 71.9 4.9 0.00017 29.2 4.3 30 31-62 187-216 (233)
45 2xk0_A Polycomb protein PCL; t 70.1 11 0.00039 22.9 5.0 39 30-68 17-56 (69)
46 1bia_A BIRA bifunctional prote 60.8 16 0.00056 27.4 5.5 32 30-62 271-302 (321)
47 2ej9_A Putative biotin ligase; 58.7 18 0.00062 26.1 5.2 42 20-62 176-221 (237)
48 2dxu_A Biotin--[acetyl-COA-car 58.1 9.9 0.00034 27.6 3.7 30 31-62 188-217 (235)
49 3rkx_A Biotin-[acetyl-COA-carb 57.2 16 0.00055 27.7 4.9 31 31-62 278-308 (323)
50 4hcz_A PHD finger protein 1; p 55.9 18 0.00063 21.3 3.9 38 31-68 6-46 (58)
51 2rm4_A CG6311-PB, DM EDC3; enh 52.8 41 0.0014 21.8 5.5 36 27-65 9-45 (103)
52 3bfm_A Biotin protein ligase-l 50.1 30 0.001 24.8 5.2 27 31-62 193-219 (235)
53 1ky9_A Protease DO, DEGP, HTRA 49.5 21 0.00071 28.3 4.5 32 32-63 110-141 (448)
54 4a8c_A Periplasmic PH-dependen 48.9 21 0.00074 27.9 4.5 33 31-63 86-118 (436)
55 3by7_A Uncharacterized protein 47.7 54 0.0018 21.2 8.2 65 36-105 7-75 (100)
56 1x4r_A PARP14 protein; WWE dom 44.1 1.9 6.3E-05 28.2 -2.0 19 46-64 34-52 (99)
57 3stj_A Protease DEGQ; serine p 41.3 32 0.0011 26.1 4.3 32 32-63 87-118 (345)
58 3pv2_A DEGQ; trypsin fold, PDZ 38.3 28 0.00097 27.5 3.7 32 32-63 101-132 (451)
59 1te0_A Protease DEGS; two doma 38.1 55 0.0019 24.2 5.1 32 32-63 65-96 (318)
60 1sg5_A ORF, hypothetical prote 37.4 25 0.00085 22.0 2.6 26 23-48 16-41 (86)
61 1lcy_A HTRA2 serine protease; 36.8 58 0.002 24.2 5.1 33 31-63 69-101 (325)
62 1nvp_D Transcription initiatio 36.6 33 0.0011 22.4 3.2 28 39-66 51-81 (108)
63 3lgi_A Protease DEGS; stress-s 36.5 64 0.0022 22.7 5.1 32 31-62 75-106 (237)
64 3sti_A Protease DEGQ; serine p 36.0 38 0.0013 24.4 3.9 31 32-62 87-117 (245)
65 3tjo_A Serine protease HTRA1; 33.2 57 0.002 23.0 4.4 33 31-63 85-117 (231)
66 1nh2_D Transcription initiatio 32.9 40 0.0014 22.5 3.2 30 39-68 55-87 (121)
67 1y8t_A Hypothetical protein RV 32.2 48 0.0017 24.5 4.0 31 33-63 64-94 (324)
68 2m0o_A PHD finger protein 1; t 31.6 33 0.0011 21.3 2.4 39 30-68 28-69 (79)
69 3qo6_A Protease DO-like 1, chl 29.3 91 0.0031 23.3 5.1 33 31-63 75-107 (348)
70 4fln_A Protease DO-like 2, chl 25.7 59 0.002 26.6 3.7 32 31-62 95-127 (539)
71 3num_A Serine protease HTRA1; 24.6 1E+02 0.0035 22.8 4.6 31 32-62 69-99 (332)
72 2eqj_A Metal-response element- 22.8 1.2E+02 0.0043 18.0 3.8 39 30-68 15-56 (66)
73 3fb9_A Uncharacterized protein 21.9 1.1E+02 0.0037 19.3 3.6 25 25-51 20-48 (90)
74 2qqr_A JMJC domain-containing 21.2 95 0.0033 20.5 3.4 22 31-52 8-29 (118)
75 2w5e_A Putative serine proteas 21.1 1.9E+02 0.0064 19.4 5.1 30 31-62 41-70 (163)
No 1
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.97 E-value=1.8e-30 Score=178.54 Aligned_cols=109 Identities=78% Similarity=1.193 Sum_probs=70.7
Q ss_pred CCCCCcchhhhhhhcCCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEecceEEEeeccCCCCCCcccCCc
Q psy11157 3 TRAEDPKQQEEEESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKP 82 (111)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~Pl~~L~~~~~~~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~ 82 (111)
..|+++.+++|+..+..+|+++|+.++..+++|+|+|++|+.|.|+|+|||+||||+|+||+|++...++++++.+..+.
T Consensus 10 ~~~~~~~~~~e~~~~~~~Pl~lL~~~~~~~k~V~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~ 89 (118)
T 1b34_B 10 EMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKP 89 (118)
T ss_dssp ----------------CCHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEC----------------
T ss_pred hcChhhhhhhhhhhcccChHHHHHHHhcCCcEEEEEECCCcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccc
Confidence 45777889999999999999999999955699999999999999999999999999999999998654332221111122
Q ss_pred cceeeeeCeEEEeCCcEEEEeeCCCCCCC
Q psy11157 83 VNKDRFISKMFLRGDSVILILKNPLALNK 111 (111)
Q Consensus 83 ~~~~r~lg~v~IRGdnVv~I~~~~~~~~~ 111 (111)
....|++|.+|||||||++|++++..|+|
T Consensus 90 ~~~~r~lg~v~IRG~nVv~I~~~~~~~~~ 118 (118)
T 1b34_B 90 VNKDRYISKMFLRGDSVIVVLRNPLIAGK 118 (118)
T ss_dssp ---CEEEEEEEECGGGEEEEEECCCCCCC
T ss_pred cccccCcCeEEEcCCEEEEEEeCchhhcC
Confidence 23467899999999999999999999876
No 2
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.92 E-value=4.9e-25 Score=145.95 Aligned_cols=88 Identities=31% Similarity=0.466 Sum_probs=65.7
Q ss_pred hcCCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEecceEEEeeccCCCCCCcccCCccceeeeeCeEEEe
Q psy11157 16 SFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLR 95 (111)
Q Consensus 16 ~~~~~Pl~~L~~~~~~~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IR 95 (111)
.....|+++|+.++ +++|+|+|++|++|.|+|+|||+||||+|+||+|++...+++++..+ .......+.+|.+|||
T Consensus 5 ~~~~~Pl~lL~~~~--~~~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~-~~~~~~~r~lG~v~iR 81 (93)
T 4emg_A 5 QAVAEPLDLVRLSL--DEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKD-KALKTIRKHYEMLFVR 81 (93)
T ss_dssp ----CTTHHHHTTT--TSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEEC---------------CEEEEEEEEEEC
T ss_pred cccCCCHHHHHHhC--CCEEEEEECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCcccc-ccccccEeEeceEEEC
Confidence 34679999999999 99999999999999999999999999999999999875433222100 0011235789999999
Q ss_pred CCcEEEEeeCC
Q psy11157 96 GDSVILILKNP 106 (111)
Q Consensus 96 GdnVv~I~~~~ 106 (111)
||||++|+++-
T Consensus 82 G~nVv~I~p~~ 92 (93)
T 4emg_A 82 GDSVILIAPPR 92 (93)
T ss_dssp GGGEEEEECCC
T ss_pred CCeEEEEEecC
Confidence 99999999853
No 3
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.92 E-value=9.6e-25 Score=139.24 Aligned_cols=75 Identities=24% Similarity=0.515 Sum_probs=66.3
Q ss_pred CCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEecceEEEeeccCCCCCCcccCCccceeeeeCeEEEeCC
Q psy11157 18 ATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGD 97 (111)
Q Consensus 18 ~~~Pl~~L~~~~~~~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRGd 97 (111)
+..|+++|++++ +++|+|+|++|+.|+|+|.|||+|||++|+||+|++.. . ..+++|.++|||+
T Consensus 2 ~~~P~~~L~~~~--~~~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~-----~---------~~~~lg~v~iRG~ 65 (77)
T 1i4k_A 2 PPRPLDVLNRSL--KSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNG-----E---------VVRKVGSVVIRGD 65 (77)
T ss_dssp -CCHHHHHHTTT--TSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETT-----E---------EEEEEEEEEECGG
T ss_pred CccHHHHHHHhC--CCEEEEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEecC-----C---------cEeECCEEEECCC
Confidence 468999999999 99999999999999999999999999999999998642 1 2467999999999
Q ss_pred cEEEEeeCCCC
Q psy11157 98 SVILILKNPLA 108 (111)
Q Consensus 98 nVv~I~~~~~~ 108 (111)
+|++|++++.+
T Consensus 66 ~I~~i~~~d~~ 76 (77)
T 1i4k_A 66 TVVFVSPAPGG 76 (77)
T ss_dssp GEEEEEECC--
T ss_pred EEEEEEeCCCC
Confidence 99999998754
No 4
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.92 E-value=1.2e-24 Score=138.37 Aligned_cols=73 Identities=26% Similarity=0.448 Sum_probs=65.3
Q ss_pred CCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEecceEEEeeccCCCCCCcccCCccceeeeeCeEEEeCC
Q psy11157 18 ATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGD 97 (111)
Q Consensus 18 ~~~Pl~~L~~~~~~~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRGd 97 (111)
+..|+++|++++ +++|+|+|+||++|+|+|.|||+|||++|+||+|++.. . ..+.+|.++|||+
T Consensus 2 ~~~P~~~L~~~~--~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~-----~---------~~~~lg~v~iRG~ 65 (75)
T 1h64_1 2 AERPLDVIHRSL--DKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDG-----E---------VVKRYGKIVIRGD 65 (75)
T ss_dssp -CCHHHHHHTTT--TSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEETT-----E---------EEEEEEEEEECGG
T ss_pred CchHHHHHHHHC--CCEEEEEECCCCEEEEEEEEEeCCCCeEEeeEEEEeeC-----C---------ceeECCEEEECCC
Confidence 468999999999 99999999999999999999999999999999998642 1 2578999999999
Q ss_pred cEEEEeeCC
Q psy11157 98 SVILILKNP 106 (111)
Q Consensus 98 nVv~I~~~~ 106 (111)
+|++|++++
T Consensus 66 ~I~~i~~~~ 74 (75)
T 1h64_1 66 NVLAISPTE 74 (75)
T ss_dssp GEEEEEEC-
T ss_pred EEEEEEeCC
Confidence 999999876
No 5
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.91 E-value=8.4e-25 Score=141.04 Aligned_cols=78 Identities=28% Similarity=0.509 Sum_probs=67.9
Q ss_pred hhhcCCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEecceEEEeeccCCCCCCcccCCccceeeeeCeEE
Q psy11157 14 EESFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMF 93 (111)
Q Consensus 14 ~~~~~~~Pl~~L~~~~~~~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~ 93 (111)
++..+..|+++|++++ +++|+|+|+||++|.|+|.|||+||||+|+||+|++.. . ..+.+|.++
T Consensus 3 m~~~~~~P~~~L~~~~--~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~-----~---------~~~~lg~v~ 66 (81)
T 1th7_A 3 MNFLAETAHKVLAESL--NNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSD-----G---------SGKKLGTIV 66 (81)
T ss_dssp CCTTCHHHHHHHHHHT--TSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEECSS-----S---------CEEEEEEEE
T ss_pred ccccccchHHHHHHhC--CCeEEEEEcCCcEEEEEEEEEcCCCCEEEccEEEEecC-----C---------ceeECCEEE
Confidence 3445678999999999 99999999999999999999999999999999998642 1 246799999
Q ss_pred EeCCcEEEEeeCCC
Q psy11157 94 LRGDSVILILKNPL 107 (111)
Q Consensus 94 IRGdnVv~I~~~~~ 107 (111)
|||++|++|++++.
T Consensus 67 iRG~~I~~i~~~~~ 80 (81)
T 1th7_A 67 IRGDNVILISPLQT 80 (81)
T ss_dssp ECGGGEEEEEEC--
T ss_pred ECCCEEEEEEecCC
Confidence 99999999998874
No 6
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.91 E-value=2.7e-24 Score=142.90 Aligned_cols=76 Identities=21% Similarity=0.395 Sum_probs=65.0
Q ss_pred hcCCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEecceEEEeeccCCCCCCcccCCccceeeeeCeEEEe
Q psy11157 16 SFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLR 95 (111)
Q Consensus 16 ~~~~~Pl~~L~~~~~~~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IR 95 (111)
.....|+++|++++ +++|+|+|++|++|+|+|+|||+||||+|+||+|++.. ++ ..+.+|.++||
T Consensus 16 ~~~~~Pl~lL~~~l--~k~V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~----~~---------~~~~lg~v~IR 80 (94)
T 4emk_A 16 SMTILPLELIDKCI--GSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTV----TG---------VTEKHSEMLLN 80 (94)
T ss_dssp ----CHHHHHHHTT--TSEEEEEESSSEEEEEEEEEECTTCCEEEEEEEEEETT----TC---------CEEEEEEEEEC
T ss_pred cccccCHHHHHHHc--CCeEEEEECCCcEEEEEEEEEcccCCeEeeeEEEEecC----CC---------cEeEcCEEEEc
Confidence 45789999999999 99999999999999999999999999999999998731 11 24679999999
Q ss_pred CCcEEEEeeCC
Q psy11157 96 GDSVILILKNP 106 (111)
Q Consensus 96 GdnVv~I~~~~ 106 (111)
|+||++|++..
T Consensus 81 G~nI~~i~p~~ 91 (94)
T 4emk_A 81 GNGMCMLIPGG 91 (94)
T ss_dssp STTEEEEEECC
T ss_pred CCEEEEEEeCC
Confidence 99999999864
No 7
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.3e-24 Score=142.58 Aligned_cols=84 Identities=30% Similarity=0.502 Sum_probs=70.3
Q ss_pred hcCCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEecceEEEeeccCCCCCCcccCCccceeeeeCeEEEe
Q psy11157 16 SFATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLR 95 (111)
Q Consensus 16 ~~~~~Pl~~L~~~~~~~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IR 95 (111)
+....|+.+|..++ +++|+|+|++||+|.|+|+|||+||||+|+||+|++...++++. ....+.+|.+|||
T Consensus 6 ~~~~~p~~~L~~~i--~k~V~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~-------~~~~r~lG~v~IR 76 (96)
T 3bw1_A 6 HHMETPLDLLKLNL--DERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEEL-------SESERRCEMVFIR 76 (96)
T ss_dssp CCCCCHHHHHGGGT--TSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTCC-------CEEEEEEEEEEEC
T ss_pred hhhhhHHHHHHHHC--CCeEEEEECCCcEEEEEEEEECCCCcEEEcCEEEEecccccccc-------CcceeEcCEEEEC
Confidence 35678999999999 99999999999999999999999999999999999865322110 1135789999999
Q ss_pred CCcEEEEeeCCCC
Q psy11157 96 GDSVILILKNPLA 108 (111)
Q Consensus 96 GdnVv~I~~~~~~ 108 (111)
|+||++|++++..
T Consensus 77 G~nVv~I~~~d~~ 89 (96)
T 3bw1_A 77 GDTVTLISTPSED 89 (96)
T ss_dssp GGGEEEEECCC--
T ss_pred CCEEEEEEecCcc
Confidence 9999999988765
No 8
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.91 E-value=4.2e-24 Score=136.49 Aligned_cols=73 Identities=25% Similarity=0.414 Sum_probs=65.6
Q ss_pred CCCcHHHHHhhhhCCcEEEEEecCC-eEEEEEEEEeccccceEecceEEEeeccCCCCCCcccCCccceeeeeCeEEEeC
Q psy11157 18 ATGPLSILTDSVKHNTQVLINCRNN-KKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRG 96 (111)
Q Consensus 18 ~~~Pl~~L~~~~~~~krV~V~lk~g-r~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG 96 (111)
...|+++|++++ +++|+|+|++| ++|+|+|.|||+||||+|+||+|++.. + ..+.+|.++|||
T Consensus 3 m~~P~~~L~~~~--~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~~-----~---------~~~~lg~v~iRG 66 (77)
T 1ljo_A 3 MVLPNQMVKSMV--GKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGE-----E---------KVRSLGEIVLRG 66 (77)
T ss_dssp CCCHHHHHHHTT--TSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEETT-----E---------EEEEEEEEEECG
T ss_pred ccchHHHHHHHC--CCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEecC-----C---------cEeECCeEEEeC
Confidence 368999999999 99999999999 999999999999999999999998631 1 246899999999
Q ss_pred CcEEEEeeCC
Q psy11157 97 DSVILILKNP 106 (111)
Q Consensus 97 dnVv~I~~~~ 106 (111)
+||++|++++
T Consensus 67 ~nI~~i~~~d 76 (77)
T 1ljo_A 67 NNVVLIQPQE 76 (77)
T ss_dssp GGEEEEEEC-
T ss_pred CeEEEEEeCC
Confidence 9999999876
No 9
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.91 E-value=1.4e-24 Score=143.70 Aligned_cols=77 Identities=19% Similarity=0.427 Sum_probs=65.1
Q ss_pred hcCCCcHHHHHhhhhCCcEEEEEe----cCCeEEEEEEEEeccccceEecceEEEeeccCCCCCCcccCCccceeeeeCe
Q psy11157 16 SFATGPLSILTDSVKHNTQVLINC----RNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISK 91 (111)
Q Consensus 16 ~~~~~Pl~~L~~~~~~~krV~V~l----k~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~ 91 (111)
.....|+++|++++ +++|+|.+ ++|++|+|+|+|||+||||+|+||+|++.. ++ ..+.+|.
T Consensus 12 ~~m~~Pl~lL~~~l--~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~----~~---------~~~~lg~ 76 (92)
T 3s6n_E 12 KVMVQPINLIFRYL--QNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSK----TK---------SRKQLGR 76 (92)
T ss_dssp --CCCHHHHHHHHH--HHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECSS----SC---------CEEEEEE
T ss_pred eeccCCHHHHHHHh--CCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEecC----CC---------ceeEcCe
Confidence 36789999999999 88888877 999999999999999999999999998632 11 2467999
Q ss_pred EEEeCCcEEEEeeCCC
Q psy11157 92 MFLRGDSVILILKNPL 107 (111)
Q Consensus 92 v~IRGdnVv~I~~~~~ 107 (111)
+||||+||++|++.++
T Consensus 77 v~iRG~nV~~i~~~~~ 92 (92)
T 3s6n_E 77 IMLKGDNITLLQSVSN 92 (92)
T ss_dssp EEECGGGEEEEEEC--
T ss_pred EEEeCCEEEEEEeCCC
Confidence 9999999999998764
No 10
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.91 E-value=1.8e-24 Score=137.74 Aligned_cols=73 Identities=25% Similarity=0.417 Sum_probs=65.1
Q ss_pred CCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEecceEEEeeccCCCCCCcccCCccceeeeeCeEEEeCC
Q psy11157 18 ATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGD 97 (111)
Q Consensus 18 ~~~Pl~~L~~~~~~~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRGd 97 (111)
+..|+++|++++ +++|+|+|++|++|+|+|.|||+||||+|+||+|+.. ++ ..+.+|.++|||+
T Consensus 2 ~~~P~~~L~~~~--~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~-----~~---------~~~~lg~v~iRG~ 65 (75)
T 4emk_B 2 DSSPNEFLNKVI--GKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVN-----GK---------KTNVYGDAFIRGN 65 (75)
T ss_dssp CSHHHHHHHHTT--TSEEEEECTTSCEEEEEEEEECTTCEEEEEEEEEEET-----TE---------EEEEEEEEEEEGG
T ss_pred CCchHHHHHHhC--CCeEEEEEcCCcEEEEEEEEEcCcceEEEccEEEEec-----CC---------cccEecEEEEcCC
Confidence 468999999999 9999999999999999999999999999999999853 21 2467999999999
Q ss_pred cEEEEeeCC
Q psy11157 98 SVILILKNP 106 (111)
Q Consensus 98 nVv~I~~~~ 106 (111)
||++|++.+
T Consensus 66 ~I~~i~~~~ 74 (75)
T 4emk_B 66 NVLYVSALD 74 (75)
T ss_dssp GSSEEEEC-
T ss_pred eEEEEEecC
Confidence 999999865
No 11
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.90 E-value=8.4e-24 Score=136.42 Aligned_cols=73 Identities=29% Similarity=0.491 Sum_probs=65.4
Q ss_pred cCCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEecceEEEeeccCCCCCCcccCCccceeeeeCeEEEeC
Q psy11157 17 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRG 96 (111)
Q Consensus 17 ~~~~Pl~~L~~~~~~~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG 96 (111)
....|+++|++++ +++|+|+|++|++|.|+|.|||+||||+|+||+|+ . +. ..+.+|.++|||
T Consensus 8 ~~~~P~~~L~~~~--~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~-~-----~~---------~~~~lg~v~iRG 70 (81)
T 1i8f_A 8 CFATLGATLQDSI--GKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI-I-----DG---------NVYKRGTMVVRG 70 (81)
T ss_dssp --CCHHHHHHTTT--TSEEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEE-E-----TT---------EEEEEEEEEECG
T ss_pred cccchHHHHHHHC--CCeEEEEEcCCcEEEEEEEEEcCCCeeEEccEEEE-c-----CC---------cccCCCEEEECC
Confidence 5789999999999 99999999999999999999999999999999998 3 11 247899999999
Q ss_pred CcEEEEeeCC
Q psy11157 97 DSVILILKNP 106 (111)
Q Consensus 97 dnVv~I~~~~ 106 (111)
++|++|++++
T Consensus 71 ~~I~~i~~~d 80 (81)
T 1i8f_A 71 ENVLFISPVP 80 (81)
T ss_dssp GGEEEEEECC
T ss_pred CEEEEEEeCC
Confidence 9999999876
No 12
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.90 E-value=9.3e-24 Score=136.86 Aligned_cols=72 Identities=29% Similarity=0.557 Sum_probs=65.4
Q ss_pred cCCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEecceEEEeeccCCCCCCcccCCccceeeeeCeEEEeC
Q psy11157 17 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRG 96 (111)
Q Consensus 17 ~~~~Pl~~L~~~~~~~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG 96 (111)
....|+++|++++ +++|+|+|+||++|.|+|.|||+|||++|+||+|++.. . ..+.+|.++|||
T Consensus 12 ~~~~P~~~L~~~~--~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~-----~---------~~~~lg~v~IRG 75 (83)
T 1mgq_A 12 NVQRPLDALGNSL--NSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDG-----E---------VTRRLGTVLIRG 75 (83)
T ss_dssp CTTCTTHHHHHTT--TSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEETT-----E---------EEEEEEEEEECG
T ss_pred cCcChHHHHHHhC--CCEEEEEEcCCcEEEEEEEEECCCceeEEccEEEEecC-----C---------cccCCCEEEECC
Confidence 4689999999999 99999999999999999999999999999999998642 1 257899999999
Q ss_pred CcEEEEee
Q psy11157 97 DSVILILK 104 (111)
Q Consensus 97 dnVv~I~~ 104 (111)
++|++|+|
T Consensus 76 ~~I~~i~p 83 (83)
T 1mgq_A 76 DNIVYISP 83 (83)
T ss_dssp GGEEEEEC
T ss_pred CEEEEEEC
Confidence 99999985
No 13
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.90 E-value=1.3e-23 Score=137.31 Aligned_cols=75 Identities=19% Similarity=0.270 Sum_probs=66.3
Q ss_pred CCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEecceEEEeeccCCCCCCcccCCccceeeeeCeEEEeCC
Q psy11157 18 ATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGD 97 (111)
Q Consensus 18 ~~~Pl~~L~~~~~~~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRGd 97 (111)
...|+++|++++ +++|+|+|++|+.|+|+|.|||+||||+|+||+|+.. ++ ..+.+|.++|||+
T Consensus 4 ~~~P~~~L~~~~--~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~-----g~---------~~~~lg~v~IRG~ 67 (86)
T 3s6n_F 4 PLNPKPFLNGLT--GKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYID-----GA---------LSGHLGEVLIRCN 67 (86)
T ss_dssp CCCHHHHHHHHT--TSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEET-----TE---------EEEEESSEEECGG
T ss_pred CcCcHHHHHHhC--CCeEEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEcC-----Cc---------eeeEccEEEEeCC
Confidence 568999999999 9999999999999999999999999999999999752 21 2467999999999
Q ss_pred cEEEEeeCCCC
Q psy11157 98 SVILILKNPLA 108 (111)
Q Consensus 98 nVv~I~~~~~~ 108 (111)
||++|++++..
T Consensus 68 nI~~i~~~d~~ 78 (86)
T 3s6n_F 68 NVLYIRGVEEE 78 (86)
T ss_dssp GEEEEEECC--
T ss_pred eEEEEEeCCcc
Confidence 99999998864
No 14
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.90 E-value=2.5e-23 Score=132.66 Aligned_cols=73 Identities=12% Similarity=0.307 Sum_probs=65.0
Q ss_pred CCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEecceEEEeeccCCCCCCcccCCccceeeeeCeEEEeCC
Q psy11157 18 ATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGD 97 (111)
Q Consensus 18 ~~~Pl~~L~~~~~~~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRGd 97 (111)
...|+++|+.++ +++|+|+|++|++|+|+|.|||+|||++|+||+|+... + ..+++|.+||||+
T Consensus 3 ~~~P~~~L~~~~--g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~~----~----------~~~~lg~v~IRG~ 66 (75)
T 1d3b_A 3 IGVPIKVLHEAE--GHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRD----G----------RVAQLEQVYIRGC 66 (75)
T ss_dssp -CCHHHHHHHTT--TSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTT----S----------CEEEEEEEEECGG
T ss_pred ccCHHHHHHHhC--CCEEEEEECCCcEEEEEEEEEccceeEEEEeEEEECCC----C----------cEEEcCeEEEeCC
Confidence 468999999999 99999999999999999999999999999999998521 2 1367999999999
Q ss_pred cEEEEeeCC
Q psy11157 98 SVILILKNP 106 (111)
Q Consensus 98 nVv~I~~~~ 106 (111)
+|.+|+.|+
T Consensus 67 nI~~i~lPd 75 (75)
T 1d3b_A 67 KIRFLILPD 75 (75)
T ss_dssp GEEEEEECC
T ss_pred EEEEEEcCC
Confidence 999999875
No 15
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.89 E-value=1.7e-23 Score=138.62 Aligned_cols=76 Identities=22% Similarity=0.336 Sum_probs=60.6
Q ss_pred hcCCCcHHHHHhhhhCCcEEEEEecCC-eEEEEEEEEeccccceEecceEEEeeccCCCCCCcccCCccceeeeeCeEEE
Q psy11157 16 SFATGPLSILTDSVKHNTQVLINCRNN-KKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFL 94 (111)
Q Consensus 16 ~~~~~Pl~~L~~~~~~~krV~V~lk~g-r~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~I 94 (111)
.....|+++|..++ +++|+|+|++| ++|+|+|.|||+||||+|+||+|++. ++ ..+.+|.+||
T Consensus 17 ~~~~~P~~~L~~~i--~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~-----~~---------~~~~lg~v~I 80 (93)
T 1n9r_A 17 MQPVNPKPFLKGLV--NHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVA-----GV---------SHGTLGEIFI 80 (93)
T ss_dssp ---------CGGGT--TSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEET-----TE---------EEEECCSEEE
T ss_pred cccCChHHHHHHhC--CCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEcC-----CC---------eEeEcCEEEE
Confidence 35678999999999 99999999999 99999999999999999999999863 21 2467999999
Q ss_pred eCCcEEEEeeCCC
Q psy11157 95 RGDSVILILKNPL 107 (111)
Q Consensus 95 RGdnVv~I~~~~~ 107 (111)
||+||++|+++++
T Consensus 81 RG~nI~~I~~~~~ 93 (93)
T 1n9r_A 81 RCNNVLYIRELPN 93 (93)
T ss_dssp CGGGEEEEEECCC
T ss_pred cCCeEEEEEeCCC
Confidence 9999999998764
No 16
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.89 E-value=1.2e-23 Score=137.98 Aligned_cols=84 Identities=20% Similarity=0.405 Sum_probs=64.3
Q ss_pred CCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEecceEEEeeccCCCCCCcccCCccceeeeeCeEEEeCC
Q psy11157 18 ATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGD 97 (111)
Q Consensus 18 ~~~Pl~~L~~~~~~~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRGd 97 (111)
+.+|.+.|.+++ +++|+|+|+|||+|.|+|+|||+||||+|+||+|++...+.+++. +.....+.+|.+||||+
T Consensus 2 ~~~~~~~L~~~~--~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~----~~~~~~~~lg~v~iRG~ 75 (91)
T 1d3b_B 2 TVGKSSKMLQHI--DYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ----AEREEKRVLGLVLLRGE 75 (91)
T ss_dssp -----CCCGGGT--TSEEEEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTS----CCEEEEEEEEEEEECGG
T ss_pred CCChhHHHHHHc--CCcEEEEECCCeEEEEEEEEECCCCeEEecCEEEEeecccccccc----ccCccEeECCEEEECCC
Confidence 456778899999 999999999999999999999999999999999987442221110 01124678999999999
Q ss_pred cEEEEeeCCC
Q psy11157 98 SVILILKNPL 107 (111)
Q Consensus 98 nVv~I~~~~~ 107 (111)
+|++|++...
T Consensus 76 ~I~~i~~~~~ 85 (91)
T 1d3b_B 76 NLVSMTVEGP 85 (91)
T ss_dssp GEEEEEEEEC
T ss_pred eEEEEEcCCC
Confidence 9999997654
No 17
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.89 E-value=1.4e-23 Score=144.74 Aligned_cols=90 Identities=17% Similarity=0.294 Sum_probs=68.3
Q ss_pred cCCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEecceEEEeeccCCCCCCccc-CCccceeeeeCeEEEe
Q psy11157 17 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKK-SKPVNKDRFISKMFLR 95 (111)
Q Consensus 17 ~~~~Pl~~L~~~~~~~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~-~~~~~~~r~lg~v~IR 95 (111)
...+|+++|++++ +++|+|.|++||+|.|+|+|||+||||+|+||+|++...+........ .....+.+.+|.+|||
T Consensus 25 ~~~~Pl~lL~~~l--~k~V~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~IR 102 (121)
T 2fwk_A 25 NIILPLALIDKCI--GNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLS 102 (121)
T ss_dssp CCCCHHHHHHHTB--TSBCEEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEEC
T ss_pred cccCcHHHHHHHc--CCeEEEEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcceEEEC
Confidence 5679999999999 999999999999999999999999999999999998531110000000 0000125679999999
Q ss_pred CCcEEEEeeCCCC
Q psy11157 96 GDSVILILKNPLA 108 (111)
Q Consensus 96 GdnVv~I~~~~~~ 108 (111)
|++|++|++.+..
T Consensus 103 G~nVv~I~~~~~~ 115 (121)
T 2fwk_A 103 GNNVAMLVPGGDP 115 (121)
T ss_dssp GGGEEEEESSSCC
T ss_pred CCEEEEEEecCCC
Confidence 9999999987653
No 18
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.89 E-value=3.5e-23 Score=132.13 Aligned_cols=73 Identities=21% Similarity=0.378 Sum_probs=52.4
Q ss_pred CCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEecceEEEeeccCCCCCCcccCCccceeeeeCeEEEeCCc
Q psy11157 19 TGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDS 98 (111)
Q Consensus 19 ~~Pl~~L~~~~~~~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRGdn 98 (111)
..|-++|.+++ +++|+|.|+||++|+|+|.|||+||||+|+||+|++.. + ..+.+|.++|||++
T Consensus 3 ~~~~~~L~~~~--~k~V~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~----~----------~~~~lg~v~iRG~~ 66 (76)
T 3s6n_G 3 KAHPPELKKFM--DKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATS----G----------QQNNIGMVVIRGNS 66 (76)
T ss_dssp -------------CCEEEEEETTTEEEEEEEEEECTTCCEEEEEEEECCCC------------------CBSSEEECSSS
T ss_pred CcchHHHHHhC--CCeEEEEECCCcEEEEEEEEECCcceEEEeceEEEccC----C----------cEeEcCEEEECCCe
Confidence 34667899999 99999999999999999999999999999999998642 1 13579999999999
Q ss_pred EEEEeeCCC
Q psy11157 99 VILILKNPL 107 (111)
Q Consensus 99 Vv~I~~~~~ 107 (111)
|++|++.+.
T Consensus 67 I~~i~~~d~ 75 (76)
T 3s6n_G 67 IIMLEALER 75 (76)
T ss_dssp EEEEEC---
T ss_pred EEEEEeccC
Confidence 999998764
No 19
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.88 E-value=1.1e-22 Score=137.55 Aligned_cols=77 Identities=19% Similarity=0.365 Sum_probs=54.0
Q ss_pred CCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEecceEEEeeccCCCCCCcccCCccceeeeeCeEEEeCC
Q psy11157 18 ATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGD 97 (111)
Q Consensus 18 ~~~Pl~~L~~~~~~~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRGd 97 (111)
.-.|+.+|++++ +++|+|+|++|++|+|+|.|||+||||+|+||+|+... ++ ..+.+|.+||||+
T Consensus 14 ~~~p~~lL~~~i--gk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~d----g~---------~~~~lg~v~IRG~ 78 (105)
T 4emh_A 14 PMLPLTLLNATQ--GRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPD----GD---------KFFRLPECYIRGN 78 (105)
T ss_dssp --------------CCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTT----SC---------EEEEEEEEEECGG
T ss_pred CCcHHHHHHHhC--CCEEEEEECCCCEEEEEEEEEcCCceEEEEEEEEEccC----Cc---------eeeEcCeEEEeCC
Confidence 356899999999 99999999999999999999999999999999998532 22 2467999999999
Q ss_pred cEEEEeeCCCCC
Q psy11157 98 SVILILKNPLAL 109 (111)
Q Consensus 98 nVv~I~~~~~~~ 109 (111)
||++|+.++...
T Consensus 79 nI~~I~~pd~l~ 90 (105)
T 4emh_A 79 NIKYLRIQDEVL 90 (105)
T ss_dssp GEEEEEC-----
T ss_pred eEEEEecCHHHh
Confidence 999999988653
No 20
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.87 E-value=2.4e-22 Score=137.37 Aligned_cols=83 Identities=19% Similarity=0.282 Sum_probs=56.7
Q ss_pred cCCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEecceEEEeeccCCCCCCcccCCccceeeeeCeEEEeC
Q psy11157 17 FATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRG 96 (111)
Q Consensus 17 ~~~~Pl~~L~~~~~~~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG 96 (111)
...-|+..|.+++ +++|+|.|+|||+|.|+|+|||+||||+|+||+|++... + +. +.....+.+|.+||||
T Consensus 20 ~kke~i~~L~~~l--~k~V~V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~-~-~~-----~~~~~~r~lG~v~IRG 90 (113)
T 4emk_C 20 PRKESILDLSRYQ--DQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNP-E-DG-----KLTGAIRKLGLVVVRG 90 (113)
T ss_dssp ------------C--CSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC----------------CCEEEEEEEEECT
T ss_pred CccchHHHHHHHc--CCcEEEEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCC-C-Cc-----ccccceeEccEEEECC
Confidence 3456788899999 999999999999999999999999999999999997531 1 10 0112357899999999
Q ss_pred CcEEEEeeCCCC
Q psy11157 97 DSVILILKNPLA 108 (111)
Q Consensus 97 dnVv~I~~~~~~ 108 (111)
+||++|++.+..
T Consensus 91 ~nIv~I~~~d~~ 102 (113)
T 4emk_C 91 TTLVLIAPMDGS 102 (113)
T ss_dssp TTEEEEEECC--
T ss_pred CeEEEEEecCcc
Confidence 999999988754
No 21
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=99.87 E-value=5.1e-22 Score=136.60 Aligned_cols=74 Identities=16% Similarity=0.224 Sum_probs=65.3
Q ss_pred CCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEecceEEEeeccCCCCCCcccCCccceeeeeCeEEEeCCc
Q psy11157 19 TGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDS 98 (111)
Q Consensus 19 ~~Pl~~L~~~~~~~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRGdn 98 (111)
+.|+++|+.++ +++|.|+|++|++|.|+|.+||+||||+|+||+|+... + ..+++|.+||||+|
T Consensus 1 M~p~~~L~~~~--gk~V~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~~----~----------~~~~lg~v~IRG~n 64 (119)
T 1b34_A 1 MKLVRFLMKLS--HETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKN----R----------EPVQLETLSIRGNN 64 (119)
T ss_dssp -CHHHHHHTCT--TCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECTT----S----------CCEEEEEEEECGGG
T ss_pred CChHHHHHHhC--CCEEEEEEcCCCEEEEEEEEEcccceEEeccEEEecCC----C----------ceeEcceEEEcCCe
Confidence 36999999999 99999999999999999999999999999999998421 1 13579999999999
Q ss_pred EEEEeeCCCC
Q psy11157 99 VILILKNPLA 108 (111)
Q Consensus 99 Vv~I~~~~~~ 108 (111)
|++|++++..
T Consensus 65 I~~I~~pd~l 74 (119)
T 1b34_A 65 IRYFILPDSL 74 (119)
T ss_dssp EEEEECCTTC
T ss_pred EEEEEecccc
Confidence 9999998763
No 22
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.86 E-value=1.6e-21 Score=146.99 Aligned_cols=82 Identities=21% Similarity=0.431 Sum_probs=67.1
Q ss_pred CCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEecceEEEeeccCCCCCCcccCCccceeeeeCeEEEeCC
Q psy11157 18 ATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGD 97 (111)
Q Consensus 18 ~~~Pl~~L~~~~~~~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRGd 97 (111)
++++-+.|.+++ +++|+|+|+|||+|+|+|++||+||||+|+||+|++...+++++. ....+++++|++|||||
T Consensus 2 ~v~k~~kL~klI--dKrV~V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~----~~~~~~R~LGlV~IRGd 75 (231)
T 3pgw_B 2 TVGKSSKMLQHI--DYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ----AEREEKRVLGLVLLRGE 75 (231)
T ss_pred CcCchHHHHHhc--CCeEEEEECCCcEEEEEEEEEcccccEEecCEEEEEeccCccccc----ccccceeEeceEEECCC
Confidence 457788899999 999999999999999999999999999999999997533322211 01124688999999999
Q ss_pred cEEEEeeC
Q psy11157 98 SVILILKN 105 (111)
Q Consensus 98 nVv~I~~~ 105 (111)
||++|+..
T Consensus 76 nIV~Isve 83 (231)
T 3pgw_B 76 NLVSMTVE 83 (231)
T ss_pred cEEEEEec
Confidence 99999943
No 23
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.84 E-value=6.8e-21 Score=132.37 Aligned_cols=75 Identities=12% Similarity=0.323 Sum_probs=66.0
Q ss_pred CCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEecceEEEeeccCCCCCCcccCCccceeeeeCeEEEeCC
Q psy11157 18 ATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGD 97 (111)
Q Consensus 18 ~~~Pl~~L~~~~~~~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRGd 97 (111)
...|+.+|+.++ +++|+|+|++|++|+|+|.+||.||||+|+||+|+... ++ ..+++.+||||+
T Consensus 3 ~~~P~~~L~~~~--gk~V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~~----g~----------~~~l~~v~IRGn 66 (126)
T 2y9a_D 3 IGVPIKVLHEAE--GHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRD----GR----------VAQLEQVYIRGS 66 (126)
T ss_dssp -CCSHHHHHSCS--SCEEEEEESSCCEEEEEEEEECTTSCEEEEEEEEECTT----SC----------CEEEEEEEECGG
T ss_pred cccHHHHHHHhC--CCEEEEEECCCcEEEEEEEEEcCceEEEEeeEEEEcCC----Cc----------EeecccEEEeCC
Confidence 468999999999 99999999999999999999999999999999997421 21 357999999999
Q ss_pred cEEEEeeCCCC
Q psy11157 98 SVILILKNPLA 108 (111)
Q Consensus 98 nVv~I~~~~~~ 108 (111)
||.+|+.++..
T Consensus 67 nI~~I~lpd~l 77 (126)
T 2y9a_D 67 KIRFLILPDML 77 (126)
T ss_dssp GEEEEECCSSC
T ss_pred EEEEEEccccc
Confidence 99999988754
No 24
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.79 E-value=2.1e-19 Score=125.39 Aligned_cols=66 Identities=20% Similarity=0.257 Sum_probs=59.8
Q ss_pred HHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEecceEEEeeccCCCCCCcccCCccceeeeeCeEEEeCCcEEEE
Q psy11157 23 SILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILI 102 (111)
Q Consensus 23 ~~L~~~~~~~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRGdnVv~I 102 (111)
++|..++ +++|+|+|++|++|.|+|.|||+||||+|+||+|+. + +.+|.++|||+||++|
T Consensus 3 ~~L~~~i--gk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~~------~------------~~lg~v~IRG~nI~~I 62 (130)
T 1m5q_A 3 AELNNLL--GREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKA------G------------EKFNRVFIMYRYIVHI 62 (130)
T ss_dssp HHHHHTT--TSEEEEEETTSCEEEEEEEEECTTCCEEEEEEECTT------C------------CEEEEEEECGGGEEEE
T ss_pred hHHHHhC--CCeEEEEECCCcEEEEEEEEEcccceeEEeeEEEEc------C------------CEeceEEEeCCeEEEE
Confidence 5789999 999999999999999999999999999999999961 1 2589999999999999
Q ss_pred eeCCCC
Q psy11157 103 LKNPLA 108 (111)
Q Consensus 103 ~~~~~~ 108 (111)
++++..
T Consensus 63 ~~~d~~ 68 (130)
T 1m5q_A 63 DSTERR 68 (130)
T ss_dssp EECCCC
T ss_pred EcCCcc
Confidence 988764
No 25
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=98.28 E-value=5.5e-06 Score=53.73 Aligned_cols=64 Identities=25% Similarity=0.310 Sum_probs=52.4
Q ss_pred CCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEec-cccceEecceEEEeeccCCCCCCcccCCccceeeeeCeEEEeC
Q psy11157 18 ATGPLSILTDSVKHNTQVLINCRNNKKLLGRVKAFD-RHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRG 96 (111)
Q Consensus 18 ~~~Pl~~L~~~~~~~krV~V~lk~gr~i~G~L~~fD-~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG 96 (111)
..+|+. |..++ +|+|.|.|.||++|+|.|.+|| ...|++|.|+ .. +. ....++|-|
T Consensus 6 ~~~p~e-l~~li--~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~----~~----~~------------~~~~~iI~G 62 (86)
T 1y96_A 6 KKGPLE-WQDYI--YKEVRVTASEKNEYKGWVLTTDPVSANIVLVNF----LE----DG------------SMSVTGIMG 62 (86)
T ss_dssp HSCHHH-HHHTT--TCEEEEEETTTEEEEEEEEEECTTTCCEEEEEE----CT----TS------------CEEEEEECG
T ss_pred hCCHHH-HHhhc--CCEEEEEEcCCCEEEEEEEEECCCceEEEEeec----cc----CC------------eEEEEEEec
Confidence 456774 58888 9999999999999999999999 9999999987 11 11 257889999
Q ss_pred CcEEEEee
Q psy11157 97 DSVILILK 104 (111)
Q Consensus 97 dnVv~I~~ 104 (111)
..|.-|-.
T Consensus 63 ~aI~eI~v 70 (86)
T 1y96_A 63 HAVQTVET 70 (86)
T ss_dssp GGEEEEEE
T ss_pred ceEEEEEE
Confidence 99887754
No 26
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=97.48 E-value=0.00016 Score=46.41 Aligned_cols=38 Identities=26% Similarity=0.336 Sum_probs=32.9
Q ss_pred HHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEe
Q psy11157 23 SILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVL 60 (111)
Q Consensus 23 ~~L~~~~~~~krV~V~lk~gr~i~G~L~~fD~~mNLvL 60 (111)
.+|..+..++.+|+|.|.+|-.++|.+.+||+|+=|+-
T Consensus 10 ~fLn~lrk~~~~Vtv~L~NG~~l~G~I~~fD~ftVlL~ 47 (82)
T 1u1s_A 10 PYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLK 47 (82)
T ss_dssp HHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHHHcCCcEEEEEeCCcEEEEEEEEEcceEEEEe
Confidence 35777777899999999999999999999999985544
No 27
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=97.46 E-value=0.00013 Score=46.49 Aligned_cols=37 Identities=32% Similarity=0.358 Sum_probs=32.3
Q ss_pred HHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEe
Q psy11157 24 ILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVL 60 (111)
Q Consensus 24 ~L~~~~~~~krV~V~lk~gr~i~G~L~~fD~~mNLvL 60 (111)
+|..+..++.+|+|.|.+|-.++|.+.+||+|+=|+-
T Consensus 15 fLn~lrk~~~~Vtv~L~nG~~l~G~I~~fD~f~VlL~ 51 (78)
T 3ahu_A 15 FLNQIRKENTYVTVFLLNGFQLRGQVKGFDNFTVLLE 51 (78)
T ss_dssp HHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHHcCCcEEEEEeCCeEEEEEEEEEcceEEEEE
Confidence 5677777789999999999999999999999985554
No 28
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=97.38 E-value=0.00019 Score=45.22 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=33.1
Q ss_pred HHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEe
Q psy11157 23 SILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVL 60 (111)
Q Consensus 23 ~~L~~~~~~~krV~V~lk~gr~i~G~L~~fD~~mNLvL 60 (111)
.+|..+..++.+|.|.|.+|-.++|.+.+||+|+=++-
T Consensus 12 ~~L~~lrk~k~~Vti~L~nG~~l~G~I~~fD~f~vlL~ 49 (74)
T 2ylb_A 12 PFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLK 49 (74)
T ss_dssp HHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEE
Confidence 46788888899999999999999999999999985443
No 29
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=97.37 E-value=0.00023 Score=45.11 Aligned_cols=40 Identities=15% Similarity=0.203 Sum_probs=33.7
Q ss_pred HHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEecc
Q psy11157 23 SILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLEN 62 (111)
Q Consensus 23 ~~L~~~~~~~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d 62 (111)
.+|..+..++.+|.|.|.+|-.++|.+.+||+|+=|+-.+
T Consensus 10 ~fLn~lrk~k~~VtI~L~nG~~l~G~I~~fD~f~VlL~~~ 49 (77)
T 1kq1_A 10 KALENFKANQTEVTVFFLNGFQMKGVIEEYDKYVVSLNSQ 49 (77)
T ss_dssp HHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEEET
T ss_pred HHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEEEEC
Confidence 3577777779999999999999999999999998555433
No 30
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=97.35 E-value=0.00017 Score=45.10 Aligned_cols=39 Identities=21% Similarity=0.053 Sum_probs=32.5
Q ss_pred HHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEecc
Q psy11157 24 ILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLEN 62 (111)
Q Consensus 24 ~L~~~~~~~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d 62 (111)
+|.....++.+|+|.|.+|-.++|.+.+||+|+=++-.+
T Consensus 17 fLn~~r~~~~~Vtv~L~NG~~l~G~I~~fD~ftVll~~~ 55 (71)
T 2qtx_A 17 FEYARRLNGKKVKIFLRNGEVLDAEVTGVSNYEIMVKVG 55 (71)
T ss_dssp CCGGGGGTTCEEEEEETTSCEEEEEEEEECSSEEEEEET
T ss_pred HHHHHHHcCCcEEEEEeCCeEEEEEEEEEcceEEEEEeC
Confidence 355556778999999999999999999999998655433
No 31
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=97.34 E-value=0.00031 Score=44.75 Aligned_cols=37 Identities=30% Similarity=0.366 Sum_probs=32.7
Q ss_pred HHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceE
Q psy11157 23 SILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMV 59 (111)
Q Consensus 23 ~~L~~~~~~~krV~V~lk~gr~i~G~L~~fD~~mNLv 59 (111)
.+|..+..++.+|.|.|.+|-.++|.+.+||+|+=|+
T Consensus 11 ~fLn~lrk~k~~VtI~LvnG~~L~G~I~~fD~f~VlL 47 (79)
T 3sb2_A 11 PFLNALRKEHVPVSIYLVNGIKLQGHVESFDQYVVLL 47 (79)
T ss_dssp HHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred HHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEE
Confidence 3577888889999999999999999999999998544
No 32
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=97.19 E-value=0.00051 Score=45.84 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=33.4
Q ss_pred HHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEe
Q psy11157 23 SILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVL 60 (111)
Q Consensus 23 ~~L~~~~~~~krV~V~lk~gr~i~G~L~~fD~~mNLvL 60 (111)
.+|..+..++.+|.|.|.+|-.++|.+.+||+|+=|+-
T Consensus 12 ~fLn~lrk~k~~VtI~LvNG~~L~G~I~~fD~f~VlL~ 49 (104)
T 2y90_A 12 PFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLK 49 (104)
T ss_dssp HHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEE
Confidence 46788888889999999999999999999999985544
No 33
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=95.90 E-value=0.015 Score=36.07 Aligned_cols=41 Identities=20% Similarity=0.193 Sum_probs=36.2
Q ss_pred Cc-HHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEe
Q psy11157 20 GP-LSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVL 60 (111)
Q Consensus 20 ~P-l~~L~~~~~~~krV~V~lk~gr~i~G~L~~fD~~mNLvL 60 (111)
.| ...|+.++.+...|.|.|-+|..++|.+.-+|.|+=++-
T Consensus 8 lPsvR~lQ~~ik~k~~V~I~L~tG~~l~G~i~WQD~~cl~L~ 49 (70)
T 3hfo_A 8 LPSVRQVQLLIKDQTPVEIKLLTGDSLFGTIRWQDTDGLGLV 49 (70)
T ss_dssp CHHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred CCcHHHHHHHHhhCceEEEEecCCCEEEEEEEEeCCCEEEEE
Confidence 44 678999999999999999999999999999999985544
No 34
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=95.41 E-value=0.037 Score=34.47 Aligned_cols=39 Identities=23% Similarity=0.318 Sum_probs=35.2
Q ss_pred HHHHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEe
Q psy11157 22 LSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVL 60 (111)
Q Consensus 22 l~~L~~~~~~~krV~V~lk~gr~i~G~L~~fD~~mNLvL 60 (111)
...|+.++++...|.|.|.+|..++|.+.-+|.|+=++.
T Consensus 13 vR~lQ~~Ik~k~~V~I~L~tGd~l~G~i~WQD~~cl~L~ 51 (72)
T 3hfn_A 13 IRQLQNLIKQAAPVEIKLVTGDAITGRVLWQDPTCVCIA 51 (72)
T ss_dssp HHHHHHHHSSCCEEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHHHhhCceEEEEecCCCEEEEEEEEECCCEEEEE
Confidence 678999999999999999999999999999999984444
No 35
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=94.10 E-value=0.69 Score=29.72 Aligned_cols=71 Identities=15% Similarity=0.237 Sum_probs=51.4
Q ss_pred CcEEEEEecCCeEEEEEEEEecccc-ceEecceEEEeeccCCCCCCcccCCccceeeeeCeEEEeCCcEEEEeeCCC
Q psy11157 32 NTQVLINCRNNKKLLGRVKAFDRHC-NMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILILKNPL 107 (111)
Q Consensus 32 ~krV~V~lk~gr~i~G~L~~fD~~m-NLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRGdnVv~I~~~~~ 107 (111)
|++|.+..+.+-.|+|+|...|..= -+.|.||.-+-++..+... ...+. ..-...++.||+.|.-+.....
T Consensus 13 Gs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~~~---~ipp~--~~vy~yIvFrgsDIKdL~V~~~ 84 (88)
T 2vxe_A 13 GSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQF---QIAPQ--SQIYDYILFRGSDIKDIRVVNN 84 (88)
T ss_dssp TCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCCSS---CCCCC--CSCEEEEEEETTTEEEEEECCC
T ss_pred CCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCCCc---ccCCC--CceeeEEEEccCCccEEEEecc
Confidence 9999999999999999999999764 7889998876554222111 11111 1236899999999998876544
No 36
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=93.13 E-value=0.47 Score=28.92 Aligned_cols=59 Identities=15% Similarity=0.341 Sum_probs=42.1
Q ss_pred HHHhhhhCCcEEEEEecCCeEEEEEEEEeccccceEecceEEEeeccCCCCCCcccCCccceeeeeCeEEEeCCcEEEEe
Q psy11157 24 ILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILIL 103 (111)
Q Consensus 24 ~L~~~~~~~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRGdnVv~I~ 103 (111)
.|.+|. ++||-|-..+.-.|.|+|.-||+-. +.|+|++.+..+ .-.+++++=|.|-.|-
T Consensus 10 tL~~WK--g~rvAv~vg~ehSFtGiledFDeEv-iLL~dV~D~~GN------------------k~k~liv~idDinWim 68 (71)
T 1ycy_A 10 VLKEWK--GHKVAVSVGGDHSFTGTLEDFDEEV-ILLKDVVDVIGN------------------RGKQMLIGLEDINWIM 68 (71)
T ss_dssp HHHHHT--TSEEEEEEC----CEEEEEEECSSE-EEEEEEEETTEE------------------EEEEEEEEGGGEEEEE
T ss_pred HHHHhC--CcEEEEEecCcceeeeehhhcCcce-eehhhHHHHhcc------------------ccceeEEEeccceEEE
Confidence 478888 9999999999999999999999975 778898876421 1245677767666654
No 37
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=92.56 E-value=0.89 Score=29.59 Aligned_cols=74 Identities=15% Similarity=0.254 Sum_probs=50.7
Q ss_pred HHhhhhCCcEEEEEecCCeEEEEEEEEeccc-cceEecceEEEeeccCCCCCCcccCCccceeeeeCeEEEeCCcEEEEe
Q psy11157 25 LTDSVKHNTQVLINCRNNKKLLGRVKAFDRH-CNMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVILIL 103 (111)
Q Consensus 25 L~~~~~~~krV~V~lk~gr~i~G~L~~fD~~-mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRGdnVv~I~ 103 (111)
-..++ |++|.++.+.+-.|+|+|...|.. .-+.|.||.-+-++...... ...+ ...-+..++.||+.|.-+.
T Consensus 14 ~~~~I--Gs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~~---~ipp--~~~vyeyIvFrGsDIKDL~ 86 (95)
T 2fb7_A 14 GTPYI--GSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDR---PIAP--RDETFEYIIFRGSDIKDLT 86 (95)
T ss_dssp --CCS--SEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCSS---CCCS--CCCCSSCEEECSTTEEEEE
T ss_pred cCccc--CCeEEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCCC---ccCC--CCcceeEEEEcCCCcceEE
Confidence 35566 999999999999999999999854 46888887765443221110 0111 1123689999999998877
Q ss_pred eC
Q psy11157 104 KN 105 (111)
Q Consensus 104 ~~ 105 (111)
..
T Consensus 87 V~ 88 (95)
T 2fb7_A 87 VC 88 (95)
T ss_dssp ES
T ss_pred Ee
Confidence 54
No 38
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=91.03 E-value=0.92 Score=28.95 Aligned_cols=63 Identities=19% Similarity=0.222 Sum_probs=46.9
Q ss_pred HHHHHhhhhCCcEEEEEecCCeEEEEEEEEecccc-ceEecceEEEeeccCCCCCCcccCCccceeeeeCeEEEeCCcEE
Q psy11157 22 LSILTDSVKHNTQVLINCRNNKKLLGRVKAFDRHC-NMVLENVKEMWTEHPRAGKGKKKSKPVNKDRFISKMFLRGDSVI 100 (111)
Q Consensus 22 l~~L~~~~~~~krV~V~lk~gr~i~G~L~~fD~~m-NLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRGdnVv 100 (111)
|.+|.... +++|.+.+.++-++.|...|+|... |+..++- ..|- ..++.-++|+..|+
T Consensus 21 Lr~l~~m~--~~~v~f~m~E~t~V~a~F~a~d~d~~~f~Vs~L-----~TPi--------------Gv~~eAlLR~~Dii 79 (85)
T 1y96_B 21 LRSLLAMV--GHQVSFTLHEGVRVAAHFGATDLDVANFYVSQL-----QTPI--------------GVQAEALLRCSDII 79 (85)
T ss_dssp HHHHHHHT--TSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEE-----CCTT--------------CCEEEEEEEGGGEE
T ss_pred HHHHHHhC--CCceEEEEeCCeEEEEEEEecCcccceeEhhhc-----CCCc--------------ccchhhhhhcCCEE
Confidence 44444544 9999999999999999999999765 6665441 1111 12678999999999
Q ss_pred EEeeC
Q psy11157 101 LILKN 105 (111)
Q Consensus 101 ~I~~~ 105 (111)
+++..
T Consensus 80 ~~sF~ 84 (85)
T 1y96_B 80 SYTFK 84 (85)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99864
No 39
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=89.07 E-value=0.63 Score=31.70 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=30.5
Q ss_pred HhhhhCCcEEEEEecCCeEEEEEEEEeccccceEe--cceE
Q psy11157 26 TDSVKHNTQVLINCRNNKKLLGRVKAFDRHCNMVL--ENVK 64 (111)
Q Consensus 26 ~~~~~~~krV~V~lk~gr~i~G~L~~fD~~mNLvL--~d~~ 64 (111)
..++ |..|.|.|++|..++|++..+|. -+|.| .+|.
T Consensus 8 sqFl--Gy~V~v~LkDgs~~qG~I~~vd~-k~LtL~~~~a~ 45 (125)
T 4a53_A 8 ADFY--GSNVEVLLNNDSKARGVITNFDS-SNSILQLRLAN 45 (125)
T ss_dssp HHHT--TCEEEEEETTSCEEEEEEEEEET-TTTEEEEEETT
T ss_pred HHhc--CceEEEEECCCCEeeEEEEeecC-CeeEEeccccc
Confidence 5667 99999999999999999999984 46777 8774
No 40
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=84.05 E-value=1.7 Score=27.61 Aligned_cols=37 Identities=32% Similarity=0.413 Sum_probs=32.6
Q ss_pred HhhhhCCcEEEEEecCCe-EEEEEEEEecccc-ceEecceE
Q psy11157 26 TDSVKHNTQVLINCRNNK-KLLGRVKAFDRHC-NMVLENVK 64 (111)
Q Consensus 26 ~~~~~~~krV~V~lk~gr-~i~G~L~~fD~~m-NLvL~d~~ 64 (111)
..|+ |+.|.+.++++- .|+|.|...|..- ||.|.+|.
T Consensus 5 ~~~i--Gs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~f 43 (84)
T 2vc8_A 5 TDWL--GSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPF 43 (84)
T ss_dssp CTTT--TCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEEE
T ss_pred cccc--CCEEEEEECCCceEEEEEEEEeccCCCeEEEehhh
Confidence 3577 999999999986 9999999999874 89999984
No 41
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=83.06 E-value=2.1 Score=31.95 Aligned_cols=32 Identities=13% Similarity=0.307 Sum_probs=29.4
Q ss_pred CCcEEEEEecCCeEEEEEEEEeccccceEecc
Q psy11157 31 HNTQVLINCRNNKKLLGRVKAFDRHCNMVLEN 62 (111)
Q Consensus 31 ~~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d 62 (111)
.|++|+|...++..+.|+..|.|..-.|+|+.
T Consensus 223 ~g~~V~v~~~~~~~~~G~~~gId~~G~L~v~~ 254 (270)
T 3rux_A 223 IGSRVRVELPGGQDVVGIARDIDDQGRLCLDV 254 (270)
T ss_dssp TTSEEEEECTTSCEEEEEEEEECTTSCEEEEE
T ss_pred cCCEEEEEECCCeEEEEEEEEECCCCeEEEEE
Confidence 58999999888899999999999999999965
No 42
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=81.72 E-value=1.6 Score=30.57 Aligned_cols=29 Identities=17% Similarity=0.328 Sum_probs=23.8
Q ss_pred HHhhhhCCcEEEEEec----CCeEEEEEEEEeccc
Q psy11157 25 LTDSVKHNTQVLINCR----NNKKLLGRVKAFDRH 55 (111)
Q Consensus 25 L~~~~~~~krV~V~lk----~gr~i~G~L~~fD~~ 55 (111)
+.++. |+.|.|.++ +.+.++|.|.++|.-
T Consensus 99 f~r~~--G~~V~V~l~~~~~g~k~~~G~L~~~~~~ 131 (164)
T 1ib8_A 99 VAGAV--GKYIHVGLYQAIDKQKVFEGTLLAFEED 131 (164)
T ss_dssp HHHHC--SEEEEEECSSCSSSCSEEEEEEEEEETT
T ss_pred HHHhC--CcEEEEEEecccCCceEEEEEEEEEeCC
Confidence 34556 999999994 458999999999874
No 43
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=72.84 E-value=5.8 Score=25.62 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=20.6
Q ss_pred HHhhhhCCcEEEEEecCCeEEEEEE
Q psy11157 25 LTDSVKHNTQVLINCRNNKKLLGRV 49 (111)
Q Consensus 25 L~~~~~~~krV~V~lk~gr~i~G~L 49 (111)
+...+.-..+|++.|.||+.+.|++
T Consensus 21 ~~~~LdGq~~v~i~l~DGs~l~GTv 45 (101)
T 2e12_A 21 WVKLLDGQERVRIELDDGSMIAGTV 45 (101)
T ss_dssp HHHTSCTTCEEEEEETTSCEEEEEE
T ss_pred HHHhhCCeeEEEEEEcCCCeEeeee
Confidence 4445556789999999999999986
No 44
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=71.91 E-value=4.9 Score=29.17 Aligned_cols=30 Identities=7% Similarity=0.176 Sum_probs=25.9
Q ss_pred CCcEEEEEecCCeEEEEEEEEeccccceEecc
Q psy11157 31 HNTQVLINCRNNKKLLGRVKAFDRHCNMVLEN 62 (111)
Q Consensus 31 ~~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d 62 (111)
.+++|+|...++ +.|+..|.|..-.|++++
T Consensus 187 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~ 216 (233)
T 2eay_A 187 LGEEVKLLGEGK--ITGKLVGLSEKGGALILT 216 (233)
T ss_dssp TTSEEEETTEEE--EEEEEEEECTTSCEEEEE
T ss_pred cCCEEEEEECCe--EEEEEEEECCCCeEEEEE
Confidence 699999876544 999999999999999964
No 45
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=70.11 E-value=11 Score=22.92 Aligned_cols=39 Identities=18% Similarity=0.442 Sum_probs=30.4
Q ss_pred hCCcEEEEEecCCeEEEEEEEEeccccceEe-cceEEEee
Q psy11157 30 KHNTQVLINCRNNKKLLGRVKAFDRHCNMVL-ENVKEMWT 68 (111)
Q Consensus 30 ~~~krV~V~lk~gr~i~G~L~~fD~~mNLvL-~d~~E~~~ 68 (111)
..+..|.++-.||+.|-|+++...+.-=||. +|-.|.|.
T Consensus 17 ~~geDVL~rw~DG~fYLGtIVd~~~~~ClV~FeD~S~~Wv 56 (69)
T 2xk0_A 17 ALQEDVFIKCNDGRFYLGTIIDQTSDQYLIRFDDQSEQWC 56 (69)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEECSSCEEEEETTCCEEEE
T ss_pred ccCCeEEEEecCCCEEEEEEEecCCceEEEEecCCcceee
Confidence 4599999999999999999977766655554 66666665
No 46
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=60.75 E-value=16 Score=27.44 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=27.5
Q ss_pred hCCcEEEEEecCCeEEEEEEEEeccccceEecc
Q psy11157 30 KHNTQVLINCRNNKKLLGRVKAFDRHCNMVLEN 62 (111)
Q Consensus 30 ~~~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d 62 (111)
..|++|+|... +..+.|+..|.|..-.|++++
T Consensus 271 ~~g~~V~v~~~-~~~~~G~~~gid~~G~L~v~~ 302 (321)
T 1bia_A 271 FINRPVKLIIG-DKEIFGISRGIDKQGALLLEQ 302 (321)
T ss_dssp TTTSEEEEEET-TEEEEEEEEEECTTSCEEEEE
T ss_pred hcCCEEEEEEC-CcEEEEEEEEECCCCeEEEEE
Confidence 36999999864 568999999999999999964
No 47
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=58.73 E-value=18 Score=26.13 Aligned_cols=42 Identities=24% Similarity=0.208 Sum_probs=32.4
Q ss_pred CcHHHHHhhh----hCCcEEEEEecCCeEEEEEEEEeccccceEecc
Q psy11157 20 GPLSILTDSV----KHNTQVLINCRNNKKLLGRVKAFDRHCNMVLEN 62 (111)
Q Consensus 20 ~Pl~~L~~~~----~~~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d 62 (111)
+.-.++..+. ..+++|+|...++..+.|+..|.|..-.|+ ++
T Consensus 176 g~~~~~~~~~~~~~~~g~~V~v~~~~~~~~~G~~~gId~~G~L~-~~ 221 (237)
T 2ej9_A 176 DDYEILKKYKKYSITIGKQVKILLSNNEIITGKVYDIDFDGIVL-GT 221 (237)
T ss_dssp CHHHHHHHHHHHBSSTTCEEEEEETTSCEEEEEEEEECSSEEEE-EE
T ss_pred CHHHHHHHHHHhhCccCCEEEEEECCCeEEEEEEEEECCCCeEE-Ec
Confidence 3444555443 269999999877766999999999999998 64
No 48
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=58.12 E-value=9.9 Score=27.62 Aligned_cols=30 Identities=13% Similarity=0.173 Sum_probs=23.7
Q ss_pred CCcEEEEEecCCeEEEEEEEEeccccceEecc
Q psy11157 31 HNTQVLINCRNNKKLLGRVKAFDRHCNMVLEN 62 (111)
Q Consensus 31 ~~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d 62 (111)
.+++|+|...++ +.|+..|.|..-.|++++
T Consensus 188 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~ 217 (235)
T 2dxu_A 188 LGVRVKILGDGS--FEGIAEDIDDFGRLIIRL 217 (235)
T ss_dssp CSSEEEC----C--CEEEEEEECTTSCEEEEC
T ss_pred cCCeEEEEECCe--EEEEEEEECCCCEEEEEE
Confidence 699999987766 999999999999999964
No 49
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=57.23 E-value=16 Score=27.74 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=26.2
Q ss_pred CCcEEEEEecCCeEEEEEEEEeccccceEecc
Q psy11157 31 HNTQVLINCRNNKKLLGRVKAFDRHCNMVLEN 62 (111)
Q Consensus 31 ~~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d 62 (111)
.|++|+|.. ++..+.|+..|.|..-.|+|++
T Consensus 278 ~g~~V~v~~-~~~~~~G~~~gId~~G~Llv~~ 308 (323)
T 3rkx_A 278 WNRTLLFTE-NDKQFKGQAIDLDYDGYLIVRD 308 (323)
T ss_dssp SSSCEEEEC-C-CEEEEEEEEECTTSCEEEEE
T ss_pred cCCEEEEEE-CCeEEEEEEEEECCCCEEEEEE
Confidence 589999976 4568999999999999999954
No 50
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=55.91 E-value=18 Score=21.26 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=28.8
Q ss_pred CCcEEEEEecCCeEEEEEEEEecccc---ceEecceEEEee
Q psy11157 31 HNTQVLINCRNNKKLLGRVKAFDRHC---NMVLENVKEMWT 68 (111)
Q Consensus 31 ~~krV~V~lk~gr~i~G~L~~fD~~m---NLvL~d~~E~~~ 68 (111)
.|.-|.+.-.||+.|-|+++.+|+.- =+...|-.+.|.
T Consensus 6 ~GedVLarwsDG~fYlGtI~~V~~~~~~clV~F~D~s~~W~ 46 (58)
T 4hcz_A 6 EGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLV 46 (58)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred cCCEEEEEecCCCEEeEEEEEEecCCCEEEEEEcCCCeEEE
Confidence 58899999999999999999988763 233355555554
No 51
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=52.76 E-value=41 Score=21.83 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=30.4
Q ss_pred hhhhCCcEEEEEecCC-eEEEEEEEEeccccceEecceEE
Q psy11157 27 DSVKHNTQVLINCRNN-KKLLGRVKAFDRHCNMVLENVKE 65 (111)
Q Consensus 27 ~~~~~~krV~V~lk~g-r~i~G~L~~fD~~mNLvL~d~~E 65 (111)
.|+ |+-|.|.+.+. ..|+|.+...|+ -++.|.++..
T Consensus 9 dwi--G~~VSI~C~d~LGVyQG~I~~V~~-~~ItL~kaFr 45 (103)
T 2rm4_A 9 DWI--GCAVSIACDEVLGVFQGLIKQISA-EEITIVRAFR 45 (103)
T ss_dssp GGT--TCEEEEEECTTTCEEEEEEEEEET-TEEEEEEEEE
T ss_pred cee--ceEEEEeeCCcceEeeEEEEEccc-ceeEEhhhhh
Confidence 677 99999999987 599999999996 4488887664
No 52
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=50.09 E-value=30 Score=24.77 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=24.0
Q ss_pred CCcEEEEEecCCeEEEEEEEEeccccceEecc
Q psy11157 31 HNTQVLINCRNNKKLLGRVKAFDRHCNMVLEN 62 (111)
Q Consensus 31 ~~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d 62 (111)
.|++|+| ++ +.|+..|.|..-.|+++.
T Consensus 193 ~g~~V~v---~~--~~G~~~gId~~G~L~v~~ 219 (235)
T 3bfm_A 193 MGEARTE---AG--RSGTFLGVDEDFGMLLRD 219 (235)
T ss_dssp TTSEEEE---TT--EEEEEEEECTTCCEEEEC
T ss_pred cCCEEEE---Ee--EEEEEEEECCCCeEEEEe
Confidence 6899999 44 999999999999999964
No 53
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=49.49 E-value=21 Score=28.25 Aligned_cols=32 Identities=13% Similarity=0.262 Sum_probs=28.2
Q ss_pred CcEEEEEecCCeEEEEEEEEeccccceEecce
Q psy11157 32 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 63 (111)
Q Consensus 32 ~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d~ 63 (111)
...+.|.+.+|+.+.+.++++|...+|.|=.+
T Consensus 110 a~~i~V~~~dg~~~~a~vv~~d~~~DlAvlkv 141 (448)
T 1ky9_A 110 ATVIKVQLSDGRKFDAKMVGKDPRSDIALIQI 141 (448)
T ss_dssp EEEEEEEETTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CCEEEEEECCCCEEEEEEEEEcCCCCEEEEEe
Confidence 35799999999999999999999999988543
No 54
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=48.93 E-value=21 Score=27.93 Aligned_cols=33 Identities=9% Similarity=0.279 Sum_probs=29.0
Q ss_pred CCcEEEEEecCCeEEEEEEEEeccccceEecce
Q psy11157 31 HNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 63 (111)
Q Consensus 31 ~~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d~ 63 (111)
...++.|.+.+|+.+.+.++++|...+|.|=.+
T Consensus 86 ~a~~i~V~~~dg~~~~a~vv~~d~~~DlAllkv 118 (436)
T 4a8c_A 86 QAQKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (436)
T ss_pred CCCEEEEEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 347899999999999999999999999988554
No 55
>3by7_A Uncharacterized protein; metagenomics, structural genomics, joint center for structur genomics, JCSG, protein structure initiative; 2.60A {Uncultured marine organism}
Probab=47.72 E-value=54 Score=21.17 Aligned_cols=65 Identities=11% Similarity=0.185 Sum_probs=43.5
Q ss_pred EEEecCCeEEEEEEEEeccccceEecceEEEeeccCCCCCC----cccCCccceeeeeCeEEEeCCcEEEEeeC
Q psy11157 36 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEHPRAGKG----KKKSKPVNKDRFISKMFLRGDSVILILKN 105 (111)
Q Consensus 36 ~V~lk~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~----~~~~~~~~~~r~lg~v~IRGdnVv~I~~~ 105 (111)
.|+|++|.++-|.+.--|.. +.++|..+.+......++. ..++.+.. .-..++||.+.|++++..
T Consensus 7 iiRlvSGEEIia~v~et~~~--i~i~nPv~V~~~~~e~gk~~gigF~pW~pls---de~~~ii~~~~ViT~~e~ 75 (100)
T 3by7_A 7 IMRLVTGEDIIGNISESQGL--ITIKKAFVIIPMQATPGKPVQLVLSPWQPYT---DDKEIVIDDSKVITITSP 75 (100)
T ss_dssp EEEETTSCEEEEEEEEETTE--EEEEEEEEEEEEC-----CCEEEEEESCTTB---CCSEEEEEGGGEEEEECB
T ss_pred EEEecCccceeEEEEecCce--EEEECCEEEEEeecCCCcceeEeeecccccC---cCceEEEchhhEEEEEeC
Confidence 47899999999999876664 8889999887543222221 11222222 147899999999999864
No 56
>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=44.05 E-value=1.9 Score=28.22 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=16.6
Q ss_pred EEEEEEeccccceEecceE
Q psy11157 46 LGRVKAFDRHCNMVLENVK 64 (111)
Q Consensus 46 ~G~L~~fD~~mNLvL~d~~ 64 (111)
-|....||+-.||.|++|.
T Consensus 34 ~~~~~~FDk~TNl~LEeA~ 52 (99)
T 1x4r_A 34 KNITQCFDKMTNMKLEVAW 52 (99)
T ss_dssp SSCEEECCTTHHHHHHHHH
T ss_pred CCeEeechHHHHHHHHHHH
Confidence 4568999999999999876
No 57
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=41.35 E-value=32 Score=26.14 Aligned_cols=32 Identities=9% Similarity=0.276 Sum_probs=28.0
Q ss_pred CcEEEEEecCCeEEEEEEEEeccccceEecce
Q psy11157 32 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 63 (111)
Q Consensus 32 ~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d~ 63 (111)
..++.|.+.+|+.+.+.++++|...+|.|=..
T Consensus 87 ~~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (345)
T 3stj_A 87 AQKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (345)
T ss_dssp EEEEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CCEEEEEeCCCcEEEEEEEEEcCCCCEEEEEE
Confidence 46789999999999999999999999988443
No 58
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=38.34 E-value=28 Score=27.49 Aligned_cols=32 Identities=9% Similarity=0.288 Sum_probs=28.3
Q ss_pred CcEEEEEecCCeEEEEEEEEeccccceEecce
Q psy11157 32 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 63 (111)
Q Consensus 32 ~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d~ 63 (111)
...+.|.+.+|+.+.+.++++|...+|.|=.+
T Consensus 101 a~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 132 (451)
T 3pv2_A 101 ASLITVTLQDGRRLKARLIGGDSETDLAVLKI 132 (451)
T ss_dssp EEEEEEECTTSCEEECEEEEEETTTTEEEEEC
T ss_pred CCEEEEEEcCCCEEEEEEEecCcCCcEEEEEE
Confidence 46789999999999999999999999988554
No 59
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=38.07 E-value=55 Score=24.20 Aligned_cols=32 Identities=6% Similarity=0.174 Sum_probs=27.6
Q ss_pred CcEEEEEecCCeEEEEEEEEeccccceEecce
Q psy11157 32 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 63 (111)
Q Consensus 32 ~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d~ 63 (111)
...+.|.+.+|+.+.+.+.++|...+|.|=..
T Consensus 65 ~~~i~V~~~~g~~~~a~v~~~d~~~DlAllk~ 96 (318)
T 1te0_A 65 ADQIIVALQDGRVFEALLVGSDSLTDLAVLII 96 (318)
T ss_dssp CSEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred CCEEEEEeCCCCEEEEEEEEeCCCceEEEEEE
Confidence 45789999999999999999999999988443
No 60
>1sg5_A ORF, hypothetical protein; A+B protein, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, transcription; NMR {Escherichia coli} SCOP: b.137.1.2
Probab=37.44 E-value=25 Score=21.98 Aligned_cols=26 Identities=15% Similarity=0.298 Sum_probs=20.7
Q ss_pred HHHHhhhhCCcEEEEEecCCeEEEEE
Q psy11157 23 SILTDSVKHNTQVLINCRNNKKLLGR 48 (111)
Q Consensus 23 ~~L~~~~~~~krV~V~lk~gr~i~G~ 48 (111)
+.|.-+...+.+++|.++||..+.|+
T Consensus 16 D~LElAc~~~~~l~l~l~dGe~~~g~ 41 (86)
T 1sg5_A 16 DNLELACQHHLMLTLELKDGEKLQAK 41 (86)
T ss_dssp HHHHHHHTTTTCEEEECTTTCCEEES
T ss_pred hHHHHHHHcCCeEEEEEeCCCEEEEE
Confidence 44555555689999999999988884
No 61
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=36.81 E-value=58 Score=24.21 Aligned_cols=33 Identities=12% Similarity=0.132 Sum_probs=28.1
Q ss_pred CCcEEEEEecCCeEEEEEEEEeccccceEecce
Q psy11157 31 HNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 63 (111)
Q Consensus 31 ~~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d~ 63 (111)
....+.|.+.+|+.+.+.+.++|....|.|=..
T Consensus 69 ~~~~i~V~~~~g~~~~a~v~~~d~~~DlAllkl 101 (325)
T 1lcy_A 69 DRRRVRVRLLSGDTYEAVVTAVDPVADIATLRI 101 (325)
T ss_dssp TCSEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred CCCEEEEEeCCCCEEEEEEEEECCCCCEEEEEE
Confidence 346799999999999999999999999888443
No 62
>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 b.56.1.1
Probab=36.64 E-value=33 Score=22.44 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=21.6
Q ss_pred ecCCeEEEEEE---EEeccccceEecceEEE
Q psy11157 39 CRNNKKLLGRV---KAFDRHCNMVLENVKEM 66 (111)
Q Consensus 39 lk~gr~i~G~L---~~fD~~mNLvL~d~~E~ 66 (111)
+++...|.|.| +-.|+.|.++|+|++-.
T Consensus 51 vksk~sfKG~L~tYrfcDnVWTf~lkd~~fk 81 (108)
T 1nvp_D 51 VRNRVNFRGSLNTYRFCDNVWTFVLNDVEFR 81 (108)
T ss_dssp CCCEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred hccCCeEeeccCCccccCcEEEEEEeceEEE
Confidence 34557788877 55699999999998854
No 63
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=36.55 E-value=64 Score=22.66 Aligned_cols=32 Identities=6% Similarity=0.183 Sum_probs=28.0
Q ss_pred CCcEEEEEecCCeEEEEEEEEeccccceEecc
Q psy11157 31 HNTQVLINCRNNKKLLGRVKAFDRHCNMVLEN 62 (111)
Q Consensus 31 ~~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d 62 (111)
....+.|.+.+|+.+.+.+.++|....|.|=.
T Consensus 75 ~~~~~~V~~~~g~~~~a~vv~~d~~~DlAll~ 106 (237)
T 3lgi_A 75 DADQIIVALQDGRVFEALLVGSDSLTDLAVLK 106 (237)
T ss_dssp TCSEEEEECTTSCEEEEEEEEEETTTTEEEEE
T ss_pred CCCEEEEEeCCCCEEEEEEEEEcCCCCEEEEE
Confidence 45689999999999999999999999988844
No 64
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=36.01 E-value=38 Score=24.44 Aligned_cols=31 Identities=10% Similarity=0.251 Sum_probs=26.2
Q ss_pred CcEEEEEecCCeEEEEEEEEeccccceEecc
Q psy11157 32 NTQVLINCRNNKKLLGRVKAFDRHCNMVLEN 62 (111)
Q Consensus 32 ~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d 62 (111)
..++.|.+.+|+.+.+.++++|....|.|=.
T Consensus 87 a~~i~V~~~dg~~~~a~vv~~d~~~DlAlLk 117 (245)
T 3sti_A 87 AQKISIQLNDGREFDAKLIGSDDQSDIALLQ 117 (245)
T ss_dssp --CEEEECTTSCEEEEEEEEEETTTTEEEEE
T ss_pred CCEEEEEECCCCEEEEEEEEecCCCCEEEEE
Confidence 3578999999999999999999999988744
No 65
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=33.17 E-value=57 Score=22.96 Aligned_cols=33 Identities=15% Similarity=0.368 Sum_probs=28.3
Q ss_pred CCcEEEEEecCCeEEEEEEEEeccccceEecce
Q psy11157 31 HNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 63 (111)
Q Consensus 31 ~~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d~ 63 (111)
....+.|.+.+++.+.+.+.++|....|.|=..
T Consensus 85 ~~~~i~V~~~~g~~~~a~v~~~d~~~DlAlL~l 117 (231)
T 3tjo_A 85 NKHRVKVELKNGATYEAKIKDVDEKADIALIKI 117 (231)
T ss_dssp SSSEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred CCceEEEEcCCCCEEEEEEEEecCCCCEEEEEe
Confidence 356899999999999999999999999888443
No 66
>1nh2_D Transcription initiation factor IIA small chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 b.56.1.1 PDB: 1ytf_D* 1rm1_B
Probab=32.88 E-value=40 Score=22.52 Aligned_cols=30 Identities=10% Similarity=0.164 Sum_probs=22.8
Q ss_pred ecCCeEEEEEE---EEeccccceEecceEEEee
Q psy11157 39 CRNNKKLLGRV---KAFDRHCNMVLENVKEMWT 68 (111)
Q Consensus 39 lk~gr~i~G~L---~~fD~~mNLvL~d~~E~~~ 68 (111)
+++...|.|.| +-.|+.|.++|+|++-...
T Consensus 55 vksk~sfKG~L~tYrfcDnVWtfilkd~~fk~~ 87 (121)
T 1nh2_D 55 TQSKLTVKGNLDTYGFCDDVWTFIVKNCQVTVE 87 (121)
T ss_dssp CCCEEEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred hccCCeEEeeeccccccCcEEEEEEeceEEEec
Confidence 34557788887 4569999999999986543
No 67
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=32.22 E-value=48 Score=24.47 Aligned_cols=31 Identities=10% Similarity=0.124 Sum_probs=27.0
Q ss_pred cEEEEEecCCeEEEEEEEEeccccceEecce
Q psy11157 33 TQVLINCRNNKKLLGRVKAFDRHCNMVLENV 63 (111)
Q Consensus 33 krV~V~lk~gr~i~G~L~~fD~~mNLvL~d~ 63 (111)
..+.|.+.+++.+.+.+.+||...+|.|=..
T Consensus 64 ~~i~V~~~~g~~~~a~vv~~d~~~DlAllkl 94 (324)
T 1y8t_A 64 PKTTVTFSDGRTAPFTVVGADPTSDIAVVRV 94 (324)
T ss_dssp CEEEEEETTCCEECEEEEECCTTTTEEEEEE
T ss_pred eEEEEEeCCCCEEEEEEEEeCCCCCEEEEEE
Confidence 4799999999999999999999999988443
No 68
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=31.56 E-value=33 Score=21.34 Aligned_cols=39 Identities=18% Similarity=0.248 Sum_probs=29.5
Q ss_pred hCCcEEEEEecCCeEEEEEEEEeccccc---eEecceEEEee
Q psy11157 30 KHNTQVLINCRNNKKLLGRVKAFDRHCN---MVLENVKEMWT 68 (111)
Q Consensus 30 ~~~krV~V~lk~gr~i~G~L~~fD~~mN---LvL~d~~E~~~ 68 (111)
..|.-|.+.-+||+.|-|+++..|..-- +..+|-.+.|.
T Consensus 28 ~eGeDVLarwsDGlfYLGTI~kV~~~~e~ClV~F~D~S~~W~ 69 (79)
T 2m0o_A 28 WEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLV 69 (79)
T ss_dssp CTTCEEEBCCTTSCCCEEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred ccCCEEEEEecCCCEEeEEEEEeccCCCEEEEEEcCCCeEEE
Confidence 5699999999999999999998886433 33355555553
No 69
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=29.32 E-value=91 Score=23.34 Aligned_cols=33 Identities=9% Similarity=0.258 Sum_probs=28.5
Q ss_pred CCcEEEEEecCCeEEEEEEEEeccccceEecce
Q psy11157 31 HNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 63 (111)
Q Consensus 31 ~~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d~ 63 (111)
....+.|.+.+++.+.+.+.++|....|.|=..
T Consensus 75 ~~~~i~V~~~~g~~~~a~~v~~d~~~DlAlLkl 107 (348)
T 3qo6_A 75 GASDLRVTLADQTTFDAKVVGFDQDKDVAVLRI 107 (348)
T ss_dssp TCSEEEEECTTSCEEEEEEEEEEGGGTEEEEEC
T ss_pred CCcEEEEEECCCCEEEEEEEEEcCcCCEEEEEE
Confidence 346899999999999999999999999888543
No 70
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=25.73 E-value=59 Score=26.64 Aligned_cols=32 Identities=28% Similarity=0.537 Sum_probs=27.4
Q ss_pred CCcEEEEEec-CCeEEEEEEEEeccccceEecc
Q psy11157 31 HNTQVLINCR-NNKKLLGRVKAFDRHCNMVLEN 62 (111)
Q Consensus 31 ~~krV~V~lk-~gr~i~G~L~~fD~~mNLvL~d 62 (111)
....|.|.+. ||+.+.+.++++|....|.|=.
T Consensus 95 ~a~~i~V~~~~dg~~~~A~vv~~D~~~DLAvLk 127 (539)
T 4fln_A 95 HDTQVKVKRRGDDRKYVAKVLVRGVDCDIALLS 127 (539)
T ss_dssp TEEEEEEECTTCCCCEEEEEEEEETTTTEEEEE
T ss_pred CCCeEEEEEccCCEEEEEEEEEECCCCCEEEEE
Confidence 4477899886 8999999999999999998844
No 71
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=24.64 E-value=1e+02 Score=22.81 Aligned_cols=31 Identities=16% Similarity=0.345 Sum_probs=27.5
Q ss_pred CcEEEEEecCCeEEEEEEEEeccccceEecc
Q psy11157 32 NTQVLINCRNNKKLLGRVKAFDRHCNMVLEN 62 (111)
Q Consensus 32 ~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d 62 (111)
...+.|.+.+++.+.+.+.++|....|.|=.
T Consensus 69 ~~~i~V~~~~g~~~~a~~~~~d~~~DlAlL~ 99 (332)
T 3num_A 69 KHRVKVELKNGATYEAKIKDVDEKADIALIK 99 (332)
T ss_dssp TSEEEEEETTSCEEEEEEEEEETTTTEEEEE
T ss_pred CCEEEEEECCCCEEEEEEEEecCCCCeEEEE
Confidence 4678999999999999999999999988844
No 72
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=22.80 E-value=1.2e+02 Score=18.02 Aligned_cols=39 Identities=21% Similarity=0.479 Sum_probs=28.3
Q ss_pred hCCcEEEEEecCCeEEEEEEEEeccc---cceEecceEEEee
Q psy11157 30 KHNTQVLINCRNNKKLLGRVKAFDRH---CNMVLENVKEMWT 68 (111)
Q Consensus 30 ~~~krV~V~lk~gr~i~G~L~~fD~~---mNLvL~d~~E~~~ 68 (111)
..|..|+..=.||+.|.|++...|+. +=+...|-.++|.
T Consensus 15 ~vGddVLA~wtDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~ 56 (66)
T 2eqj_A 15 EEGQDVLARWSDGLFYLGTIKKINILKQSCFIIFEDSSKSWV 56 (66)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTTEEEEE
T ss_pred cCCCEEEEEEccCcEEEeEEEEEccCCcEEEEEEccCCEEEE
Confidence 35888988889999999999999975 2233355555543
No 73
>3fb9_A Uncharacterized protein; unknown function, structural genomics, MCSG, PSI2, protein S initiative; 1.80A {Streptococcus pneumoniae}
Probab=21.91 E-value=1.1e+02 Score=19.33 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=20.1
Q ss_pred HHhhhhCCcEEEEEecCCe----EEEEEEEE
Q psy11157 25 LTDSVKHNTQVLINCRNNK----KLLGRVKA 51 (111)
Q Consensus 25 L~~~~~~~krV~V~lk~gr----~i~G~L~~ 51 (111)
|..++ |++|.+..+.|| +-.|.|..
T Consensus 20 l~~~v--G~~V~l~An~GRkK~~er~GvL~e 48 (90)
T 3fb9_A 20 IKAHE--GQVVEMTLENGRKRQKNRLGKLIE 48 (90)
T ss_dssp HHHTT--TSEEEEEECCSSSCCSCEEEEEEE
T ss_pred HHHcC--CCEEEEEecCCcccEEEEEEEEEE
Confidence 66666 999999999996 45798864
No 74
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=21.23 E-value=95 Score=20.49 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=19.0
Q ss_pred CCcEEEEEecCCeEEEEEEEEe
Q psy11157 31 HNTQVLINCRNNKKLLGRVKAF 52 (111)
Q Consensus 31 ~~krV~V~lk~gr~i~G~L~~f 52 (111)
.|.+|..+-++|+.|+|++.+-
T Consensus 8 vGq~V~akh~ngryy~~~V~~~ 29 (118)
T 2qqr_A 8 AGQKVISKHKNGRFYQCEVVRL 29 (118)
T ss_dssp TTCEEEEECTTSSEEEEEEEEE
T ss_pred cCCEEEEECCCCCEEeEEEEEE
Confidence 3899999999999999987654
No 75
>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1}
Probab=21.09 E-value=1.9e+02 Score=19.41 Aligned_cols=30 Identities=13% Similarity=0.155 Sum_probs=24.2
Q ss_pred CCcEEEEEecCCeEEEEEEEEeccccceEecc
Q psy11157 31 HNTQVLINCRNNKKLLGRVKAFDRHCNMVLEN 62 (111)
Q Consensus 31 ~~krV~V~lk~gr~i~G~L~~fD~~mNLvL~d 62 (111)
....+.|.+ +++.+.+.++ +|.-..|.|=.
T Consensus 41 ~~~~i~V~~-dg~~~~a~vv-~d~~~DlAlLk 70 (163)
T 2w5e_A 41 NNTFVNVCY-EGLMYEAKVR-YMPEKDIAFIT 70 (163)
T ss_dssp TCSEEEEEE-TTEEEEEEEE-ECCSSSEEEEE
T ss_pred CCceEEEEE-CCEEEEEEEE-EECCCCEEEEE
Confidence 356788888 9999999999 89888877743
Done!