BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11159
(141 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 133 bits (335), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 83/106 (78%)
Query: 27 TSFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDID 86
T+F +QD DF+ +V N+ TPV+VDF A WC PCK L PRLE ++ + GKVV+AKVDID
Sbjct: 13 TTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDID 72
Query: 87 ELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLV 132
+ TDLA++YEVSAVP ++AMKNG +D+ +G++D D+L++F+ L+
Sbjct: 73 DHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLI 118
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 65/102 (63%), Gaps = 3/102 (2%)
Query: 29 FKVQDMNDFEKKVKNASTP-VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDE 87
++V+D DF K++ A V++DF+ATWC PCK + P+LE + M VV KVD+DE
Sbjct: 3 YQVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSM-SDVVFLKVDVDE 61
Query: 88 LTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
D+A D +++ +P + MKNG++LD L G + DKL ++
Sbjct: 62 CEDIAQDNQIACMPTFLFMKNGQKLDSLSG-ANYDKLLELVE 102
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
Query: 22 GSAVYTSFKVQDMNDFEKKVKNASTPVIV-DFFATWCNPCKTLTPRLEAVIDEMKGKVVL 80
+A ++V+D D + ++ AS ++V DFFATWC PCK ++P+L + + VV+
Sbjct: 1 AAAAAMVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVV 60
Query: 81 AKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIG 117
KVD+DE D+AM+Y +S++P + +KNG +++ G
Sbjct: 61 LKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAG 97
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 60/90 (66%), Gaps = 1/90 (1%)
Query: 29 FKVQDMNDFEKKVKNASTPVIV-DFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDE 87
++V+D D + ++ AS ++V DFFATWC PCK ++P+L + + VV+ KVD+DE
Sbjct: 3 YQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDE 62
Query: 88 LTDLAMDYEVSAVPVLIAMKNGKELDRLIG 117
D+AM+Y +S++P + +KNG +++ G
Sbjct: 63 CEDIAMEYNISSMPTFVFLKNGVKVEEFAG 92
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 79.7 bits (195), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 59/94 (62%), Gaps = 2/94 (2%)
Query: 36 DFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDY 95
DF+ KV++ +VDF+ATWC PCK + P LE + + +GK + K+D+DE A Y
Sbjct: 13 DFDSKVESGVQ--LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKY 70
Query: 96 EVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
EV ++P LI K+G+ +D+++G Q + L +D
Sbjct: 71 EVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLD 104
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT 89
+V D N FE++V + PV+VDF+A WC PC+ + P +E + E +GKV + KV++DE
Sbjct: 5 EVTDEN-FEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENP 63
Query: 90 DLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
+ A Y + ++P L+ KNG+ +DRL+G Q + LK ID
Sbjct: 64 NTAAQYGIRSIPTLLLFKNGQVVDRLVGAQPKEALKERID 103
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 62/96 (64%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD 94
+ F++ V AS V+VDF+A WC PCK + P L + E GKV +AKV+ID+ +
Sbjct: 10 SSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNA 69
Query: 95 YEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDN 130
Y+V ++P L+ +++GK +D+ +G +LK+++++
Sbjct: 70 YQVRSIPTLMLVRDGKVIDKKVGALPKSQLKAWVES 105
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 60/94 (63%), Gaps = 3/94 (3%)
Query: 36 DFEKKV-KNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD 94
D EK + +N ++VDFFA WC PC+ + P++EA+ E+ +V AKVD+D+ + A
Sbjct: 9 DLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP-EVEFAKVDVDQNEEAAAK 67
Query: 95 YEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFI 128
Y V+A+P + +K+GKE+DR G + KL+ I
Sbjct: 68 YSVTAMPTFVFIKDGKEVDRFSGANET-KLRETI 100
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Query: 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT 89
+++ ++++ + + V+VDFFATWC PCK + P +E E K+D+DE++
Sbjct: 4 QLKSASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEK-FAEQYSDAAFYKLDVDEVS 62
Query: 90 DLAMDYEVSAVPVLIAMKNGKELDRLIG 117
D+A EVS++P LI K GKE+ R++G
Sbjct: 63 DVAQKAEVSSMPTLIFYKGGKEVTRVVG 90
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 55/95 (57%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD 94
+ FE V A ++VDF+A WC PCK + P L+ + DE +GK+ +AK++ID+ A
Sbjct: 10 DSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 95 YEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
Y + +P L+ KNG+ +G +LK F+D
Sbjct: 70 YGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 104
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 55/95 (57%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD 94
+ F+ V A ++VDF+A WC PCK + P LE + DE +GK+ +AK++ID+ A
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 95 YEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
Y + +P L+ KNG+ +G +LK F+D
Sbjct: 70 YGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 104
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Query: 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT 89
+++ ++++ + + V+VDFFATWC PCK + P +E E K+D+DE++
Sbjct: 11 QLKSASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEK-FAEQYSDAAFYKLDVDEVS 69
Query: 90 DLAMDYEVSAVPVLIAMKNGKELDRLIG 117
D+A EVS++P LI K GKE+ R++G
Sbjct: 70 DVAQKAEVSSMPTLIFYKGGKEVTRVVG 97
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 58/94 (61%), Gaps = 2/94 (2%)
Query: 36 DFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDY 95
DF+ KV++ +VDF+ATWC CK + P LE + + +GK + K+D+DE A Y
Sbjct: 12 DFDSKVESGVQ--LVDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKY 69
Query: 96 EVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
EV ++P LI K+G+ +D+++G Q + L +D
Sbjct: 70 EVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLD 103
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 75.9 bits (185), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 58/94 (61%), Gaps = 2/94 (2%)
Query: 36 DFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDY 95
DF+ KV++ +VDF+ATWC CK + P LE + + +GK + K+D+DE A Y
Sbjct: 13 DFDSKVESGVQ--LVDFWATWCGTCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKY 70
Query: 96 EVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
EV ++P LI K+G+ +D+++G Q + L +D
Sbjct: 71 EVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLD 104
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 75.5 bits (184), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 57/90 (63%), Gaps = 2/90 (2%)
Query: 30 KVQDMND--FEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDE 87
+VQD+ND +++ V + PV+VDF+A WC PCK + P ++ + E GK+ + K++ DE
Sbjct: 1 EVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDE 60
Query: 88 LTDLAMDYEVSAVPVLIAMKNGKELDRLIG 117
+A Y + ++P ++ KNG+ + +IG
Sbjct: 61 APGIATQYNIRSIPTVLFFKNGERKESIIG 90
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 55/95 (57%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD 94
+ F+ V A ++VDF+A WC PCK + P L+ + DE +GK+ +AK++ID+ A
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 95 YEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
Y + +P L+ KNG+ +G +LK F+D
Sbjct: 70 YGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 104
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 55/95 (57%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD 94
+ F+ V A ++VDF+A WC PCK + P L+ + DE +GK+ +AK++ID+ A
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 95 YEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
Y + +P L+ KNG+ +G +LK F+D
Sbjct: 70 YGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 104
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 54/93 (58%)
Query: 37 FEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYE 96
F+ V A ++VDF+A WC PCK + P L+ + DE +GK+ +AK++ID+ A Y
Sbjct: 12 FDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG 71
Query: 97 VSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
+ +P L+ KNG+ +G +LK F+D
Sbjct: 72 IRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 104
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 56/95 (58%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD 94
+ F+ V A ++VDF+A WC PCK + P L+ + DE +GK+ +AK++ID+ A
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 95 YEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
Y + ++P L+ KNG+ +G +LK F+D
Sbjct: 70 YGIRSIPTLLLFKNGEVAATKVGALSKGQLKEFLD 104
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 55/95 (57%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD 94
+ F+ V A ++VDF+A WC PCK + P L+ + DE +GK+ +AK++ID+ A
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 95 YEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
Y + +P L+ KNG+ +G +LK F+D
Sbjct: 70 YGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 104
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 55/95 (57%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD 94
+ F+ V A ++VDF+A WC PCK + P L+ + DE +GK+ +AK++ID+ A
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 95 YEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
Y + +P L+ KNG+ +G +LK F+D
Sbjct: 70 YGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 104
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 55/95 (57%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD 94
+ F+ V A ++VDF+A WC PCK + P L+ + DE +GK+ +AK++ID+ A
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 95 YEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
Y + +P L+ KNG+ +G +LK F+D
Sbjct: 70 YGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 104
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 55/95 (57%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD 94
+ F+ V A ++VDF+A WC PCK + P L+ + DE +GK+ +AK++ID+ A
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 95 YEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
Y + +P L+ KNG+ +G +LK F+D
Sbjct: 70 YGIRGIPTLLLFKNGEVAATKVGALSKGQLKCFLD 104
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 55/95 (57%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD 94
+ F+ V A ++VDF+A WC PCK + P L+ + DE +GK+ +AK++ID+ A
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 95 YEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
Y + +P L+ KNG+ +G +LK F+D
Sbjct: 70 YGIRGIPTLLLFKNGEVAATKVGALSKGQLKCFLD 104
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 55/95 (57%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD 94
+ F+ V A ++VDF+A WC PCK + P L+ + DE +GK+ +AK++ID+ A
Sbjct: 20 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 79
Query: 95 YEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
Y + +P L+ KNG+ +G +LK F+D
Sbjct: 80 YGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 114
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Query: 28 SFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDE 87
+ KV D + F V +++ PV+VDF+ATWC PCK + P LE + E + +AK+D+D
Sbjct: 9 TIKVTDAS-FATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDT 67
Query: 88 LTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQ 119
+ A +++V ++P LI K+G+ + R++G +
Sbjct: 68 NPETARNFQVVSIPTLILFKDGQPVKRIVGAK 99
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Query: 28 SFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDE 87
+ KV D + F V +++ PV+VDF+ATWC PCK + P LE + E + +AK+D+D
Sbjct: 14 TIKVTDAS-FATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDT 72
Query: 88 LTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQ 119
+ A +++V ++P LI K+G+ + R++G +
Sbjct: 73 NPETARNFQVVSIPTLILFKDGQPVKRIVGAK 104
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 55/95 (57%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD 94
+ F+ V A ++VDF+A WC PCK + P L+ + DE +GK+ +AK++ID+ A
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 95 YEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
Y + +P L+ KNG+ +G +LK F+D
Sbjct: 70 YGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 104
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 54/95 (56%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD 94
+ F+ V A ++VDF+A WC PCK + P L+ + DE +GK+ +AK++ID+ A
Sbjct: 11 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 70
Query: 95 YEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
Y + P L+ KNG+ +G +LK F+D
Sbjct: 71 YGIRGTPTLLLFKNGEVAATKVGALSKGQLKEFLD 105
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 54/95 (56%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD 94
+ F+ V A ++VDF+A WC PCK + P L+ + DE +GK+ +AK++ID+ A
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 95 YEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
Y + +P L+ KNG +G +LK F+D
Sbjct: 70 YGIRGIPTLLLFKNGDVAATKVGALSKGQLKEFLD 104
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMK 107
V+VDF+ATWC PCK + P +E E + K+D+DEL D+A EVSA+P L+ K
Sbjct: 21 VVVDFYATWCGPCKMIAPMIEK-FSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFK 79
Query: 108 NGKELDRLIG 117
NGKE+ +++G
Sbjct: 80 NGKEVAKVVG 89
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMK 107
V+VDF+ATWC PCK + P +E E + K+D+DEL D+A EVSA+P L+ K
Sbjct: 27 VVVDFYATWCGPCKMIAPMIEK-FSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFK 85
Query: 108 NGKELDRLIG 117
NGKE+ +++G
Sbjct: 86 NGKEVAKVVG 95
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 55/95 (57%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD 94
+ F+ V A ++VDF+A WC PCK + P L+ + DE +GK+ +AK++ID+ A
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 95 YEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
Y + +P L+ KNG+ +G +LK F+D
Sbjct: 70 YGIRGIPTLLLFKNGEVAACKVGALSKGQLKEFLD 104
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 58/94 (61%), Gaps = 2/94 (2%)
Query: 36 DFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDY 95
DF+ KV++ +VDF+AT C PCK + P LE + + +GK + K+D+DE A Y
Sbjct: 12 DFDSKVESGVQ--LVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKY 69
Query: 96 EVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
EV ++P LI K+G+ +D+++G Q + L +D
Sbjct: 70 EVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLD 103
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 32 QDMND--FEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT 89
QD+ND +++ V + PV+VDF+A WC PCK + P ++ + E GK+ + K++ DE
Sbjct: 2 QDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAP 61
Query: 90 DLAMDYEVSAVPVLIAMKNGKELDRLIG 117
+A Y + ++P ++ KNG+ + +IG
Sbjct: 62 GIATQYNIRSIPTVLFFKNGERKESIIG 89
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
Query: 39 KKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG-KVVLAKVDIDELTDLAMDYEV 97
K+V V++DF+ATWC PCK + P E + D G KV KVD+DE + +A + +
Sbjct: 27 KQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGI 86
Query: 98 SAVPVLIAMKNGKELDRLIGLQDIDKLKSFI 128
A+P + KNG+++D ++G D KL++ I
Sbjct: 87 RAMPTFVFFKNGQKIDTVVGA-DPSKLQAAI 116
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 55/95 (57%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD 94
+ F+ V A ++VDF+A WC PC+ + P L+ + DE +GK+ +AK++ID+ A
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 95 YEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
Y + +P L+ KNG+ +G +LK F+D
Sbjct: 70 YGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 104
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 55/95 (57%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD 94
+ F+ V A ++VDF+A WC PCK + P L+ + +E +GK+ +AK++ID+ A
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNIDQNPGTAPK 69
Query: 95 YEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
Y + +P L+ KNG+ +G +LK F+D
Sbjct: 70 YGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 104
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 55/95 (57%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD 94
+ F+ V A ++VDF+A WC PCK + P L+ + D+ +GK+ +AK++ID+ A
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNIDQNPGTAPK 69
Query: 95 YEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
Y + +P L+ KNG+ +G +LK F+D
Sbjct: 70 YGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 104
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 73.2 bits (178), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT 89
+++ ++++ + + V+VDFFATWC P K + P +E E K+D+DE++
Sbjct: 12 QLKSASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEK-FAEQYSDAAFYKLDVDEVS 70
Query: 90 DLAMDYEVSAVPVLIAMKNGKELDRLIG 117
D+A EVS++P LI K GKE+ R++G
Sbjct: 71 DVAQKAEVSSMPTLIFYKGGKEVTRVVG 98
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 73.2 bits (178), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT 89
+++ ++++ + + V+VDFFATWC P K + P +E E K+D+DE++
Sbjct: 4 QLKSASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEK-FAEQYSDAAFYKLDVDEVS 62
Query: 90 DLAMDYEVSAVPVLIAMKNGKELDRLIG 117
D+A EVS++P LI K GKE+ R++G
Sbjct: 63 DVAQKAEVSSMPTLIFYKGGKEVTRVVG 90
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 63/109 (57%), Gaps = 5/109 (4%)
Query: 30 KVQDMNDFEKKVKN-ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDEL 88
K+ D + K+ K P IVDF+A WC PCK + P LE + E GK+ + KV++D+
Sbjct: 35 KIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKE 94
Query: 89 TDLAMDYEVSAVPVL--IAMKNGKELDRLIGLQDIDKLKSFIDNLVEKQ 135
+LA D+ + +P + + MK +++ +G ++LK +ID ++ KQ
Sbjct: 95 PELARDFGIQGIPTIWFVPMKGEPQVN--MGALSKEQLKGYIDKVLLKQ 141
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 47 PVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAM 106
P++VDF+A WC PC+ + P+ +A + G+V LAK+D +A + + +P I
Sbjct: 66 PLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAFILF 125
Query: 107 KNGKELDRLIGLQDIDKLKSFIDN 130
G+EL R G + +L F+
Sbjct: 126 HKGRELARAAGARPASELVGFVRG 149
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 72.8 bits (177), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 64/109 (58%), Gaps = 5/109 (4%)
Query: 30 KVQDMNDFEKKVKN-ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDEL 88
K+ D + K+ K P IVDF+A WC PCK + P LE + E GK+ + KV++D+
Sbjct: 35 KIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKE 94
Query: 89 TDLAMDYEVSAVPVL--IAMKNGKELDRLIGLQDIDKLKSFIDNLVEKQ 135
+LA D+ + ++P + + MK +++ +G ++LK +ID ++ KQ
Sbjct: 95 PELARDFGIQSIPTIWFVPMKGEPQVN--MGALSKEQLKGYIDKVLLKQ 141
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 72.8 bits (177), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 49/72 (68%)
Query: 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMK 107
V+VDF+A WC PC+ + P LE + E +GK+++AK+D+DE A Y V ++P +I K
Sbjct: 22 VLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPKTAXRYRVXSIPTVILFK 81
Query: 108 NGKELDRLIGLQ 119
+G+ ++ L+G Q
Sbjct: 82 DGQPVEVLVGAQ 93
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 72.8 bits (177), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 49/72 (68%)
Query: 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMK 107
V+VDF+A WC PC+ + P LE + E +GK+++AK+D+DE A Y V ++P +I K
Sbjct: 21 VLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPKTAXRYRVXSIPTVILFK 80
Query: 108 NGKELDRLIGLQ 119
+G+ ++ L+G Q
Sbjct: 81 DGQPVEVLVGAQ 92
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 72.8 bits (177), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 61/98 (62%), Gaps = 1/98 (1%)
Query: 36 DFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDY 95
+F++ ++ PV+VDF+A WC PC+ + P LE + KV +AK+++DE + +
Sbjct: 9 NFQQAIQG-DGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQF 67
Query: 96 EVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVE 133
+ ++P LI K G+ + +LIG Q ++L++ + ++++
Sbjct: 68 GIMSIPTLILFKGGRPVKQLIGYQPKEQLEAQLADVLQ 105
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 72.4 bits (176), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 57/94 (60%), Gaps = 2/94 (2%)
Query: 36 DFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDY 95
DF+ KV++ +VDF+ATWC K + P LE + + +GK + K+D+DE A Y
Sbjct: 13 DFDSKVESGVQ--LVDFWATWCGTSKMIAPVLEELAADYEGKADILKLDVDENPSTAAKY 70
Query: 96 EVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
EV ++P LI K+G+ +D+++G Q + L +D
Sbjct: 71 EVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLD 104
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 72.4 bits (176), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 61/98 (62%), Gaps = 1/98 (1%)
Query: 36 DFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDY 95
+F++ ++ PV+VDF+A WC PC+ + P LE + KV +AK+++DE + +
Sbjct: 9 NFQQAIQG-DKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQF 67
Query: 96 EVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVE 133
+ ++P LI K G+ + +LIG Q ++L++ + ++++
Sbjct: 68 GIMSIPTLILFKGGRPVKQLIGYQPKEQLEAQLADVLQ 105
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 72.4 bits (176), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 48/70 (68%), Gaps = 2/70 (2%)
Query: 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMK 107
V+VDFFATWC PCKT+ P + + + K + KVD+D+L + A Y +SA+P IA+K
Sbjct: 36 VVVDFFATWCGPCKTIAPLFKELSE--KYDAIFVKVDVDKLEETARKYNISAMPTFIAIK 93
Query: 108 NGKELDRLIG 117
NG+++ ++G
Sbjct: 94 NGEKVGDVVG 103
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 54/95 (56%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD 94
+ F+ V A ++VDF+A WC P K + P L+ + DE +GK+ +AK++ID+ A
Sbjct: 30 DSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 89
Query: 95 YEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
Y + +P L+ KNG+ +G +LK F+D
Sbjct: 90 YGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 124
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
Query: 30 KVQDMND--FEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDE 87
+VQD+ND +++ V + PV+VDF+A WC P K + P ++ + E GK+ + K++ DE
Sbjct: 1 EVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKLNTDE 60
Query: 88 LTDLAMDYEVSAVPVLIAMKNGKELDRLIG 117
+A Y + ++P ++ KNG+ + +IG
Sbjct: 61 APGIATQYNIRSIPTVLFFKNGERKESIIG 90
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 48/70 (68%), Gaps = 2/70 (2%)
Query: 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMK 107
V+VDFFATWC PCKT+ P + + + K + KVD+D+L + A Y +SA+P IA+K
Sbjct: 27 VVVDFFATWCGPCKTIAPLFKELSE--KYDAIFVKVDVDKLEETARKYNISAMPTFIAIK 84
Query: 108 NGKELDRLIG 117
NG+++ ++G
Sbjct: 85 NGEKVGDVVG 94
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 61/98 (62%), Gaps = 1/98 (1%)
Query: 36 DFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDY 95
+F++ ++ PV+VDF+A WC PC+ + P LE + KV +AK+++DE + +
Sbjct: 9 NFQQAIQG-DGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQF 67
Query: 96 EVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVE 133
+ ++P LI K G+ + +LIG Q ++L++ + ++++
Sbjct: 68 GIMSIPTLILFKGGEPVKQLIGYQPKEQLEAQLADVLQ 105
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 61/98 (62%), Gaps = 1/98 (1%)
Query: 36 DFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDY 95
+F++ ++ PV+VDF+A WC PC+ + P LE + KV +AK+++DE + +
Sbjct: 9 NFQQAIQG-DKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQF 67
Query: 96 EVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVE 133
+ ++P LI K G+ + +LIG Q ++L++ + ++++
Sbjct: 68 GIMSIPTLILFKGGEPVKQLIGYQPKEQLEAQLADVLQ 105
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 54/95 (56%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD 94
+ F+ V A ++VDF+A WC CK + P L+ + DE +GK+ +AK++ID+ A
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 95 YEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
Y + +P L+ KNG+ +G +LK F+D
Sbjct: 70 YGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 104
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 54/95 (56%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD 94
+ F+ V A ++VDF+A WC PCK + L+ + DE +GK+ +AK++ID+ A
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 95 YEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
Y + +P L+ KNG+ +G +LK F+D
Sbjct: 70 YGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 104
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 54/95 (56%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD 94
+ F+ V A ++VDF+A WC P K + P L+ + DE +GK+ +AK++ID+ A
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 95 YEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
Y + +P L+ KNG+ +G +LK F+D
Sbjct: 70 YGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 104
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Query: 28 SFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDE 87
+ KV D + F V +++ PV+VDF+ATWC P K + P LE + E + +AK+D+D
Sbjct: 11 TIKVTDAS-FATDVLSSNKPVLVDFWATWCGPSKMVAPVLEEIATERATDLTVAKLDVDT 69
Query: 88 LTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQ 119
+ A +++V ++P LI K+G+ + R++G +
Sbjct: 70 NPETARNFQVVSIPTLILFKDGQPVKRIVGAK 101
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 40 KVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSA 99
K K A VI+DF A+WC PC+ + P + G V L KVD+DEL ++A Y V A
Sbjct: 31 KAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFL-KVDVDELKEVAEKYNVEA 89
Query: 100 VPVLIAMKNGKELDRLIGLQDID 122
+P + +K+G E D+++G + D
Sbjct: 90 MPTFLFIKDGAEADKVVGARKDD 112
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 54/95 (56%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD 94
+ F+ + A ++VDF+A WC PCK + P L+ + DE +GK+ +AK++ID+ A
Sbjct: 10 DSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 95 YEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
Y +P L+ KNG+ +G +LK F+D
Sbjct: 70 YIERGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 104
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMK 107
V+VDF+ATWC P K + P +E E + K+D+DEL D+A EVSA+P L+ K
Sbjct: 27 VVVDFYATWCGPSKMIAPMIEK-FSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFK 85
Query: 108 NGKELDRLIG 117
NGKE+ +++G
Sbjct: 86 NGKEVAKVVG 95
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin
With An Arginine Insertion In The Active Site
Length = 109
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCN-PCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAM 93
+ F+ V A ++VDF+A WC PCK + P L+ + DE +GK+ +AK++ID+ A
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP 69
Query: 94 DYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
Y + +P L+ KNG+ +G +LK F+D
Sbjct: 70 KYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 105
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 54/95 (56%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD 94
+ F+ V A ++VDF+A WC CK + P L+ + DE +GK+ +AK++ID+ A
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 95 YEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
Y + +P L+ KNG+ +G +LK F+D
Sbjct: 70 YGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 104
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 68.9 bits (167), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 51/81 (62%)
Query: 37 FEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYE 96
F+ V +S PV+VDF+A WC PC+ + P ++ + E K K+ K++ DE ++A +Y
Sbjct: 11 FKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYG 70
Query: 97 VSAVPVLIAMKNGKELDRLIG 117
+ ++P ++ K GK+ + +IG
Sbjct: 71 IRSIPTIMVFKGGKKCETIIG 91
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 33 DMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLA 92
D F ++V A +VDFFA WC PC+ ++P LE + + G++ + KV++DE LA
Sbjct: 39 DEKGFAQEVAGAPL-TLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLA 97
Query: 93 MDYEVSAVPVLIAMKNGKELDRLIGLQDI----DKLKSFIDN 130
Y V +VP L+ + G + +G ++L+ +++
Sbjct: 98 ARYGVRSVPTLVLFRRGAPVATWVGASPRRVLEERLRPYLEG 139
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 59/98 (60%), Gaps = 2/98 (2%)
Query: 31 VQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTD 90
V+ N+ +K + T V+VDF A+WC PC+ + P + ++ V+ KVD DEL
Sbjct: 24 VETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN-VLFLKVDTDELKS 82
Query: 91 LAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFI 128
+A D+ + A+P + +K GK LD+++G + D+L+S I
Sbjct: 83 VASDWAIQAMPTFMFLKEGKILDKVVGAKK-DELQSTI 119
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD 94
+ FE+ V PV+VDF+A WC PC+ + P LEA+ E K+ + K++IDE A
Sbjct: 13 DSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAK 72
Query: 95 YEVSAVPVLIAMKNGKELDRLIGLQ 119
Y V ++P L + G+ ++G +
Sbjct: 73 YGVMSIPTLNVYQGGEVAKTIVGAK 97
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 23 SAVYTSFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAK 82
AV Q+ + K+ VI+DF A+WC PC+ + P + G + L K
Sbjct: 6 GAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFL-K 64
Query: 83 VDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIG 117
VD+DEL D+A Y V A+P + +K+G+++D ++G
Sbjct: 65 VDVDELKDVAEAYNVEAMPTFLFIKDGEKVDSVVG 99
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMK 107
VIVDFFA WC PCK + P E + K+V KVD+DE++++ ++++P K
Sbjct: 29 VIVDFFAEWCGPCKRIAPFYEEC-SKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYK 87
Query: 108 NGKELDRLIGLQDIDKLKSFIDNLVEKQSA 137
NG +D L+G D S + L+EK +A
Sbjct: 88 NGSSVDTLLGAND-----SALKQLIEKYAA 112
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 51/82 (62%)
Query: 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMK 107
V+ DF+A WC PCK + P LE + EM K+ + K+D+DE + A Y V ++P L+ +K
Sbjct: 20 VLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLK 79
Query: 108 NGKELDRLIGLQDIDKLKSFID 129
+G+ ++ +G + + L+ ++
Sbjct: 80 DGEVVETSVGFKPKEALQELVN 101
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 56/93 (60%), Gaps = 3/93 (3%)
Query: 26 YTSF-KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVD 84
YTS K+ ++ +F +K + +++DF+ATWC PCK + P L +I V K D
Sbjct: 11 YTSITKLTNLTEFRNLIKQ-NDKLVIDFYATWCGPCKMMQPHLTKLIQAYP-DVRFVKCD 68
Query: 85 IDELTDLAMDYEVSAVPVLIAMKNGKELDRLIG 117
+DE D+A + EV+A+P + K+G+ + ++IG
Sbjct: 69 VDESPDIAKECEVTAMPTFVLGKDGQLIGKIIG 101
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 53/95 (55%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD 94
+ F+ V A ++VDF+A WC K + P L+ + DE +GK+ +AK++ID+ A
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 95 YEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
Y + +P L+ KNG+ +G +LK F+D
Sbjct: 70 YGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 104
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMK 107
V+VDF ATWC PCK + P + + E V+ +VD+D+ D+A Y + +P L+ K
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHS-LSEKYSNVIFLEVDVDDAQDVAPKYGIRGIPTLLLFK 81
Query: 108 NGKELDRLIGLQDIDKLKSFID-NLV 132
NG+ +G +LK F+D NLV
Sbjct: 82 NGEVAATKVGALSKGQLKEFLDANLV 107
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 14/109 (12%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNP--------------CKTLTPRLEAVIDEMKGKVVL 80
+ F+ V A ++VDF+A WC P CK + P L+ + DE +GK+ +
Sbjct: 11 DSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTV 70
Query: 81 AKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
AK++ID+ A Y + +P L+ KNG+ +G +LK F+D
Sbjct: 71 AKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 119
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 35 NDFEKKVKNASTP--VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLA 92
++FE ++ + + ++V+FFA WC CK L P EA +KG V LAKVD T+
Sbjct: 9 DNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVDCTANTNTC 68
Query: 93 MDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFI 128
Y VS P L ++G+E G + D + S +
Sbjct: 69 NKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHL 104
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%)
Query: 36 DFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDY 95
+FE +V A PV+V F+A+WC PC+ ++P + + ++ + K++ID Y
Sbjct: 16 EFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKY 75
Query: 96 EVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
+V VP L +K + LD G+ DKL SF+D
Sbjct: 76 KVEGVPALRLVKGEQILDSTEGVISKDKLLSFLD 109
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 50/82 (60%)
Query: 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMK 107
V+ DF+A WC P K + P LE + EM K+ + K+D+DE + A Y V ++P L+ +K
Sbjct: 20 VLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLK 79
Query: 108 NGKELDRLIGLQDIDKLKSFID 129
+G+ ++ +G + + L+ ++
Sbjct: 80 DGEVVETSVGFKPKEALQELVN 101
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 50/82 (60%)
Query: 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMK 107
V+ DF+A WC P K + P LE + EM K+ + K+D+DE + A Y V ++P L+ +K
Sbjct: 20 VLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLK 79
Query: 108 NGKELDRLIGLQDIDKLKSFID 129
+G+ ++ +G + + L+ ++
Sbjct: 80 DGEVVETSVGFKPKEALQELVN 101
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 62.8 bits (151), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
Query: 36 DFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDY 95
+F++ ++N + V+VD +A WC PC P + V ++ KGK V ++++DE +A Y
Sbjct: 13 NFDEVIRN-NKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIADKY 71
Query: 96 EVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
V +P + NG+ +D L+G D D L+S ++
Sbjct: 72 SVLNIPTTLIFVNGQLVDSLVGAVDEDTLESTVN 105
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 56/98 (57%), Gaps = 5/98 (5%)
Query: 40 KVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSA 99
K K P++VDF ATWC PCK + P E + ++ GKV+ KVD+D + +A ++A
Sbjct: 19 KGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITA 78
Query: 100 VPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEKQSA 137
+P K+G + D L+G DKLK+ LV K +A
Sbjct: 79 MPTFHVYKDGVKADDLVGASQ-DKLKA----LVAKHAA 111
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 31 VQDMNDFEKKVKNASTP---VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDE 87
V + + +++ A+T V++DF A+WC PC+ + P + + V L KVD+DE
Sbjct: 17 VHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFL-KVDVDE 75
Query: 88 LTDLAMDYEVSAVPVLIAMKNGKELDRLIG 117
L +A + V A+P + MK G DR++G
Sbjct: 76 LKPIAEQFSVEAMPTFLFMKEGDVKDRVVG 105
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD 94
FEK K + ++VDF A+WC PCK + P + + V KVD+DEL +A +
Sbjct: 17 EHFEKG-KGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN-VTFLKVDVDELKAVAEE 74
Query: 95 YEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFI 128
+ V A+P I +K+GK +D+ +G D D L + +
Sbjct: 75 WNVEAMPTFIFLKDGKLVDKTVG-ADKDGLPTLV 107
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMK 107
V+VDF ATWC PCK + P + + E V+ +VD+D+ D+A + EV A P K
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHS-LSEKYSNVIFLEVDVDDAQDVASEAEVKATPTFQFFK 81
Query: 108 NGKELDRLIGLQDIDKLKSFIDNLV 132
G+++ G + +KL++ I+ LV
Sbjct: 82 KGQKVGEFSGA-NKEKLEATINELV 105
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGK---VVLAKVDIDELTDL 91
++F+ V NA ++V+F+A WC CK L P E E+ + + LAKVD E TDL
Sbjct: 15 DNFDDVVNNADI-ILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQTDL 73
Query: 92 AMDYEVSAVPVLIAMKNGKELD 113
A ++VS P L + G+ D
Sbjct: 74 AKRFDVSGYPTLKIFRKGRPFD 95
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 47 PVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAM 106
P ++DF+A WC PC++ P E GKV KV+ + L+ + + ++P +
Sbjct: 57 PXVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIXLY 116
Query: 107 KNGKELDRLIGLQDIDKLKSFIDNLVEKQ 135
+NGK +D L G K+ DN +++Q
Sbjct: 117 RNGKXIDXLNGAVP----KAPFDNWLDEQ 141
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Query: 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMK 107
V+VDF+A WC PC L P +E + ++ +V K++ +E D+AM Y + ++P ++ K
Sbjct: 26 VVVDFWAEWCAPCLILAPVIEELANDYP-QVAFGKLNTEESQDIAMRYGIMSLPTIMFFK 84
Query: 108 NGKELDRLIGLQDIDKLKSFIDNLVE 133
NG+ +D+++G ++++ + +L+E
Sbjct: 85 NGELVDQILGAVPREEIEVRLKSLLE 110
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMK 107
V+VDF ATWC PCK + P + + E V+ +VD+D+ D+A + EV ++P K
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHS-LSEKYSNVIFLEVDVDDCQDVASESEVKSMPTFQFFK 81
Query: 108 NGKELDRLIGLQDIDKLKSFIDNLV 132
G+++ G + +KL++ I+ LV
Sbjct: 82 KGQKVGEFSGA-NKEKLEATINELV 105
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 56/96 (58%), Gaps = 6/96 (6%)
Query: 40 KVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSA 99
++K A V+VDFFATWC PC+ L L ++ + K V KVD+D+ + A Y VS+
Sbjct: 18 RIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEANK-DVTFIKVDVDKNGNAADAYGVSS 76
Query: 100 VPVLIAM-KNGKE---LDRLIGLQDIDKLKSFIDNL 131
+P L + K G E LD+ +G D+ ++K+ I+
Sbjct: 77 IPALFFVKKEGNEIKTLDQFVG-ADVSRIKADIEKF 111
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMK 107
V+VDF ATWC PCK + P + + E V+ +VD+D+ D+A + EV ++P K
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHS-LSEKYSNVIFLEVDVDDCQDVASECEVKSMPTFQFFK 81
Query: 108 NGKELDRLIGLQDIDKLKSFIDNLV 132
G+++ G +KL++ I+ LV
Sbjct: 82 KGQKVGEFSGANK-EKLEATINELV 105
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 8/120 (6%)
Query: 1 MCLLPRLTSINKCIPSRSLSVGSAVYTSFKVQDMNDFEKKVKNASTP---VIVDFFATWC 57
+CL R + P L+ G+ + K + +++K+ AS V+ +F A WC
Sbjct: 3 LCLAKRNHDADDDEPHIELAGGNVHLITTKER----WDQKLSEASRDGKIVLANFSARWC 58
Query: 58 NPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIG 117
PCK + P + E ++ +D+DEL+D + +E+ A P +++G+++D+L+G
Sbjct: 59 GPCKQIAPYY-IELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVG 117
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 59.7 bits (143), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMK 107
V+VDF ATWC PCK + P + + E V+ +VD+D+ D+A + EV +P K
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHS-LSEKYSNVIFLEVDVDDCQDVASEXEVKCMPTFQFFK 81
Query: 108 NGKELDRLIGLQDIDKLKSFIDNLV 132
G+++ G +KL++ I+ LV
Sbjct: 82 KGQKVGEFSGANK-EKLEATINELV 105
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 59.3 bits (142), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMK 107
V+VDF ATWC PCK + P + + E V+ +VD+D+ D+A + EV +P K
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHS-LSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFK 81
Query: 108 NGKELDRLIGLQDIDKLKSFIDNLV 132
G+++ G +KL++ I+ LV
Sbjct: 82 KGQKVGEFSGANK-EKLEATINELV 105
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 59.3 bits (142), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 55/98 (56%), Gaps = 5/98 (5%)
Query: 40 KVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSA 99
K K P++V F ATWC PCK + P E + ++ GKV+ KVD+D + +A ++A
Sbjct: 19 KGKEEHKPIVVAFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITA 78
Query: 100 VPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEKQSA 137
+P K+G + D L+G DKLK+ LV K +A
Sbjct: 79 MPTFHVYKDGVKADDLVGASQ-DKLKA----LVAKHAA 111
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 59.3 bits (142), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMK 107
V+VDF ATWC PCK + P + + E V+ +VD+D+ D+A + EV P K
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHS-LSEKYSNVIFLEVDVDDCQDVASECEVKCTPTFQFFK 81
Query: 108 NGKELDRLIGLQDIDKLKSFIDNLV 132
G+++ G +KL++ I+ LV
Sbjct: 82 KGQKVGEFSGANK-EKLEATINELV 105
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 43 NASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVP- 101
P IVDF+A WC PCK + P L+ + E G++V+ KVD ++ +LA + + ++P
Sbjct: 36 EGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAFGIRSIPS 95
Query: 102 -VLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEKQSA 137
+ I M+ E+ + G K ID + K+
Sbjct: 96 ILFIPMEGKPEMAQ--GAMPKASFKKAIDEFLLKKEG 130
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 31 VQDMNDFEKKVKNASTP---VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDE 87
V + + +++ A+T V++DF A+WC P + + P + + V L KVD+DE
Sbjct: 20 VHSLEQWTMQIEEANTAKKLVVIDFTASWCGPSRIMAPVFADLAKKFPNAVFL-KVDVDE 78
Query: 88 LTDLAMDYEVSAVPVLIAMKNGKELDRLIG 117
L +A + V A+P + MK G DR++G
Sbjct: 79 LKPIAEQFSVEAMPTFLFMKEGDVKDRVVG 108
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMK 107
V+VDF ATWC P K + P + + E V+ +VD+D+ D+A + EV A P K
Sbjct: 23 VVVDFSATWCGPAKMIKPFFHS-LSEKYSNVIFLEVDVDDAQDVASEAEVKATPTFQFFK 81
Query: 108 NGKELDRLIGLQDIDKLKSFIDNLV 132
G+++ G + +KL++ I+ LV
Sbjct: 82 KGQKVGEFSGA-NKEKLEATINELV 105
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMK 107
V+VDF ATWC PCK + P + + E V+ +VD+++ D+A + EV +P K
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHS-LSEKYSNVIFLEVDVNDCQDVASECEVKCMPTFQFFK 81
Query: 108 NGKELDRLIGLQDIDKLKSFIDNLV 132
G+++ G +KL++ I+ LV
Sbjct: 82 KGQKVGEFSGANK-EKLEATINELV 105
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 49 IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKN 108
+VDF+A WC PC L P +E + ++ +V K++ DE D+A Y V ++P +I K+
Sbjct: 20 VVDFWAEWCAPCLILAPIIEELAEDYP-QVGFGKLNSDENPDIAARYGVMSLPTVIFFKD 78
Query: 109 GKELDRLIGLQDIDKLKSFIDNLV 132
G+ +D +IG ++++ I NL+
Sbjct: 79 GEPVDEIIGAVPREEIEIRIKNLL 102
>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium
pdb|3QDN|B Chain B, Putative Thioredoxin Protein From Salmonella Typhimurium
Length = 287
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 54/94 (57%)
Query: 42 KNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVP 101
++ +TPV+ F++ C LTP LE++ + G+ +LAK+D D +A + + A+P
Sbjct: 23 QSXTTPVLFYFWSERSQHCLQLTPVLESLAAQYHGQFILAKLDCDAEQXIAAQFGLRAIP 82
Query: 102 VLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEKQ 135
+ +NG+ +D G Q + +++ +D ++ ++
Sbjct: 83 TVYLFQNGQPVDGFQGPQPEEAIRALLDKVLPRE 116
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMK 107
V+VDF ATWC P K + P + + E V+ +VD+D+ D+A + EV ++P K
Sbjct: 23 VVVDFSATWCGPSKMIKPFFHS-LSEKYSNVIFLEVDVDDSQDVASESEVKSMPTFQFFK 81
Query: 108 NGKELDRLIGLQDIDKLKSFIDNLV 132
G+++ G + +KL++ I+ LV
Sbjct: 82 KGQKVGEFSGA-NKEKLEATINELV 105
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 56.2 bits (134), Expect = 5e-09, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 35 NDFEKKVKNASTP--VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLA 92
++FE ++ + + ++V+FFA WC K L P EA +KG V LAKVD T+
Sbjct: 9 DNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTNTC 68
Query: 93 MDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFI 128
Y VS P L ++G+E G + D + S +
Sbjct: 69 NKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHL 104
Score = 46.2 bits (108), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG--KVVLAKVDIDE 87
KV +F++ V N + V+++F+A WC CK L P+ + + +++ +V+AK+D
Sbjct: 355 KVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATA 414
Query: 88 LTDLAMDYEVSAVPVLIAMKNGKELD 113
D+ YEV P + K+L+
Sbjct: 415 -NDVPSPYEVRGFPTIYFSPANKKLN 439
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMK 107
V+VDF ATWC P K + P + + E V+ +VD+D+ D+A + EV ++P K
Sbjct: 34 VVVDFSATWCGPSKMIKPFFHS-LSEKYSNVIFLEVDVDDCQDVASECEVKSMPTFQFFK 92
Query: 108 NGKELDRLIGLQDIDKLKSFIDNLV 132
G+++ G + +KL++ I+ LV
Sbjct: 93 KGQKVGEFSGA-NKEKLEATINELV 116
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 48/96 (50%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD 94
+DF+ +V+ P+I+ F +WC PCK + P E + +M+G + A +D ++ +
Sbjct: 7 SDFQLEVRQHPDPIIIMFTGSWCQPCKKMKPTFEEMASQMEGDIRFAYMDAEDAEKTMAE 66
Query: 95 YEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDN 130
+ +P L +G + G + L+ +I+N
Sbjct: 67 LNIRTLPSLALFVDGMIREVFSGTMNKSDLRYWINN 102
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVID-EMKG--KVVLAKVDIDELTDL 91
N+F+ + T + F+A WC CKTL P E + E G V +A+VD ++
Sbjct: 13 NNFDDTIAEGIT--FIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNI 70
Query: 92 AMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFI 128
Y V P L+ + GK++ G +D+D L F+
Sbjct: 71 CSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFV 107
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 55.8 bits (133), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVID-EMKG--KVVLAKVDIDELTDL 91
N+F+ + T + F+A WC CKTL P E + E G V +A+VD ++
Sbjct: 15 NNFDDTIAEGIT--FIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNI 72
Query: 92 AMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFI 128
Y V P L+ + GK++ G +D+D L F+
Sbjct: 73 CSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFV 109
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 55.8 bits (133), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGK---VVLAKVDIDELTDL 91
+F++ V +A ++V+F+A WC CK L P E E+ + + LAKVD TDL
Sbjct: 138 ENFDEVVNDADI-ILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDL 196
Query: 92 AMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEKQSAVNS 140
A ++VS P L + G+ D + +D ++E+ A S
Sbjct: 197 AKRFDVSGYPTLKIFRKGRPYD----YNGPREKYGIVDYMIEQSGAAAS 241
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGK---VVLAKVDIDELTDLAMDYEVSAVPVLI 104
V+++F+A WC CK P E + + +K K + +AK+D + LA ++VS P +
Sbjct: 35 VLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYPTIK 94
Query: 105 AMKNGKELD 113
+K G+ +D
Sbjct: 95 ILKKGQAVD 103
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 8/120 (6%)
Query: 1 MCLLPRLTSINKCIPSRSLSVGSAVYTSFKVQDMNDFEKKVKNASTP---VIVDFFATWC 57
+CL R + P L+ G+ + K + +++K+ AS V+ +F A WC
Sbjct: 3 LCLAKRNHDADDDEPHIELAGGNVHLITTKER----WDQKLSEASRDGKIVLANFSARWC 58
Query: 58 NPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIG 117
P + + P + E ++ +D+DEL+D + +E+ A P +++G+++D+L+G
Sbjct: 59 GPSRQIAPYY-IELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVG 117
>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn
Length = 287
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 54/94 (57%)
Query: 42 KNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVP 101
++ +TPV+ F++ C LTP LE++ + G+ +LAK+D D +A + + A+P
Sbjct: 23 QSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIP 82
Query: 102 VLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEKQ 135
+ +NG+ +D G Q + +++ +D ++ ++
Sbjct: 83 TVYLFQNGQPVDGFQGPQPEEAIRALLDXVLPRE 116
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVID-EMKG--KVVLAKVDIDELTDL 91
N+F+ + T + F+A WC CKTL P E + E G V +A+VD ++
Sbjct: 8 NNFDDTIAEGIT--FIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNI 65
Query: 92 AMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFI 128
Y V P L+ + GK++ G +D+D L F+
Sbjct: 66 CSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFV 102
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMK 107
V+VDF ATWC P K + P + + E V+ +VD+D+ D+A + EV +P K
Sbjct: 23 VVVDFSATWCGPSKMIKPFFHS-LSEKYSNVIFLEVDVDDCQDVASECEVKRMPTFQFFK 81
Query: 108 NGKELDRLIGLQDIDKLKSFIDNLV 132
G+++ G + +KL++ I+ LV
Sbjct: 82 KGQKVGEFSGA-NKEKLEATINELV 105
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 44 ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG---KVVLAKVDIDELTDLAMDYEVSAV 100
A ++V+F+A WC CK L P ++K ++ LAKVD E +DLA Y V
Sbjct: 23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGY 82
Query: 101 PVLIAMKNG 109
P + +NG
Sbjct: 83 PTIKFFRNG 91
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 30/65 (46%)
Query: 37 FEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYE 96
F +KV T +VDF+A WC PC+ P E + +KGKV KVD
Sbjct: 13 FNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAG 72
Query: 97 VSAVP 101
+ A P
Sbjct: 73 IKAYP 77
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 21 VGSAVYTSFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMK----- 75
+GS + TS +++++ + N + +V+F+A WC + L P E D +K
Sbjct: 3 LGSEI-TSLDTENIDE----ILNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPN 57
Query: 76 -GKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDR-LIGLQDIDKLKSFI 128
+VV A+VD D+ +D+A Y +S P L +NG R G + + L +I
Sbjct: 58 ENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGXXXKREYRGQRSVKALADYI 112
>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By
Ser And Cys 35 Replaced By Ser
Length = 105
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMK 107
V+VDF ATW P K + P + + E V+ +VD+D+ D+A + EV +P K
Sbjct: 23 VVVDFSATWSGPSKMIKPFFHS-LSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFK 81
Query: 108 NGKELDRLIGLQDIDKLKSFIDNLV 132
G+++ G + +KL++ I+ LV
Sbjct: 82 KGQKVGEFSGA-NKEKLEATINELV 105
>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
pdb|3UL3|A Chain A, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
Length = 128
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%)
Query: 45 STPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLI 104
+T +++ FFA WC C + ++ + ++ L KVD+D+ LA + V ++P +I
Sbjct: 42 NTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKSLPTII 101
Query: 105 AMKNGKELDR 114
+KN L R
Sbjct: 102 LLKNKTMLAR 111
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGK--VVLAKVDIDELTDLAMD-YEVSAVPVLI 104
V+++F+A WC CK L P ++ + KG+ +V+AK+D D+ D Y+V P +
Sbjct: 28 VLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDA-TANDITNDQYKVEGFPTIY 86
Query: 105 AMKNGKELDRL---IGLQDIDKLKSFIDNLVEKQS 136
+G + + + G +D++ L FID K+S
Sbjct: 87 FAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKRS 121
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEM----KGKVVLAKVDIDELTD 90
+ F+K V ++ +V+F+A WC CK L P A E+ KGKV LA VD
Sbjct: 15 DSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQV 74
Query: 91 LAMDYEVSAVPVLIAMKNGK 110
LA Y + P + + G+
Sbjct: 75 LASRYGIRGFPTIKIFQKGE 94
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGK---VVLAKVDIDELTDL 91
+F+ V + T V+++F+A WC CK P E + +K + +AK+D + L
Sbjct: 25 GNFDNFVADKDT-VLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASML 83
Query: 92 AMDYEVSAVPVLIAMKNGKELD 113
A ++VS P + +K G+ +D
Sbjct: 84 ASKFDVSGYPTIKILKKGQAVD 105
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMK 107
V+VDF ATWC PCK + P + + E V+ +VD+D+ D+A + EV +P K
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHS-LSEKYSNVIFLEVDVDDXQDVASEXEVKCMPTFQFFK 81
Query: 108 NGKELDRLIGLQDIDKLKSFIDNLV 132
G+++ G +KL++ I+ LV
Sbjct: 82 KGQKVGEFSGANK-EKLEATINELV 105
>pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
pdb|3D6I|B Chain B, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
Length = 112
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 48 VIVDFFATWCNPCKTLTPRLEAVIDE-MKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAM 106
+++ F +W PCK L EA+ +E V +D DE ++++ +E+SAVP I +
Sbjct: 24 IVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEISAVPYFIII 83
Query: 107 KNGKELDRLIG 117
G L L G
Sbjct: 84 HKGTILKELSG 94
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 52/97 (53%), Gaps = 5/97 (5%)
Query: 36 DFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG--KVVLAKVDIDELTDLAM 93
+F++ V N + V+++F+A WC CK L P+ + + +++ +V+AK+D D+
Sbjct: 36 NFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDAT-ANDVPS 94
Query: 94 DYEVSAVPVLIAMKNGKELD--RLIGLQDIDKLKSFI 128
YEV P + K+L+ + G +++ S++
Sbjct: 95 PYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYL 131
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 49 IVDFFATWCNPCKTLTPRLEAVIDEMKG-KVVLAKVDIDELTDLAMDYEVSAVPVLIAMK 107
+++F+A WC C+ L P E+ + + +V +AKVD+ E L+ + ++A+P + K
Sbjct: 26 MIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALPTIYHCK 85
Query: 108 NGKELDRLIGLQDIDKLKSFIDNLVEKQ 135
+G E R G + K FI+ + +K+
Sbjct: 86 DG-EFRRYQGPR---TKKDFINFISDKE 109
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD 94
++F ++V + +V+F+A WC C+ LTP + +K V + V+ D+ L
Sbjct: 25 SNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQ 84
Query: 95 YEVSAVPVL 103
Y V P +
Sbjct: 85 YGVQGFPTI 93
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 35 NDFEKKVK-NASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAM 93
FE+ ++ A + ++V F+A W C + + + E+ +V K++ + + +++
Sbjct: 27 GQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP-QVSFVKLEAEGVPEVSE 85
Query: 94 DYEVSAVPVLIAMKNGKELDRLIG 117
YE+S+VP + KN +++DRL G
Sbjct: 86 KYEISSVPTFLFFKNSQKIDRLDG 109
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 37 FEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKV--DIDELTDLAMD 94
F+K + N + +V+F+A WC CK L+ + G V +A V D+++ L
Sbjct: 27 FDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAK 86
Query: 95 YEVSAVPVLIAMK 107
Y+V+ P L+ +
Sbjct: 87 YDVNGFPTLMVFR 99
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 52 FFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKE 111
F A WC PCKT+ +E + E V AKVD D +++ V +P I ++GK
Sbjct: 44 FTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADNNSEIVSKCRVLQLPTFIIARSGKM 102
Query: 112 LDRLIG 117
L +IG
Sbjct: 103 LGHVIG 108
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 45.1 bits (105), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 48 VIVDFFATWCNPCKTLTPR-LEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAM 106
V+ +FFA WC CK + P ++A ++ + LA++D E DL M++ + P L
Sbjct: 34 VLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSLKIF 93
Query: 107 KN 108
KN
Sbjct: 94 KN 95
Score = 34.7 bits (78), Expect = 0.016, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 41 VKNASTPVIVDFFATWCNPCKTLTPRLEAVID---EMKGKVVLAKVDIDELTDLAMDYEV 97
V + V+V ++A WC CK L P + + D V++AK+D E + +
Sbjct: 372 VNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTE--NDVRGVVI 429
Query: 98 SAVPVLIAMKNGKELDRLI--GLQDIDKLKSFI 128
P ++ GK+ + ++ G + +D L FI
Sbjct: 430 EGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFI 462
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 35 NDFEKKVK-NASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAM 93
FE+ ++ A + ++V F+A W C + + + E+ +V K++ + + +++
Sbjct: 21 GQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP-QVSFVKLEAEGVPEVSE 79
Query: 94 DYEVSAVPVLIAMKNGKELDRLIG 117
YE+S+VP + KN +++DRL G
Sbjct: 80 KYEISSVPTFLFFKNSQKIDRLDG 103
>pdb|2DJ0|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Related Transmembrane Protein 2
Length = 137
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 20 SVGSAVYTSFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTP-RLEAVIDEMKGKV 78
S GS+ Y + D E+ ++ IV+FFA W N C++ P + + +
Sbjct: 2 SSGSSGYIKY-FNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGL 60
Query: 79 VLAKVDIDELTDLAMDYEVSA------VPVLIAMKNGKELDR 114
KVD+ TD++ Y+VS +P LI + GKE R
Sbjct: 61 NFGKVDVGRYTDVSTRYKVSTSPLTKQLPTLILFQGGKEAMR 102
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 30 KVQDMND--FEKKVKNAS-TPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDID 86
KV ++N F VK A PV++D F WC PCK + P+ E + +E V+ K+D +
Sbjct: 19 KVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL-DVIFLKLDCN 77
Query: 87 -ELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKL 124
E LA + + VP +K + + G + DKL
Sbjct: 78 QENKTLAKELGIRVVPTFKILKENSVVGEVTGAK-YDKL 115
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 47 PVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDID-ELTDLAMDYEVSAVPVLIA 105
PV++D F WC PCK + P+ E + +E V+ K+D + E LA + + VP
Sbjct: 27 PVVLDMFTQWCGPCKAMAPKYEKLAEEYL-DVIFLKLDCNQENKTLAKELGIRVVPTFKI 85
Query: 106 MKNGKELDRLIGLQDIDKL 124
+K + + G + DKL
Sbjct: 86 LKENSVVGEVTGAK-YDKL 103
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 42.7 bits (99), Expect = 7e-05, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 28/65 (43%)
Query: 37 FEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYE 96
F +KV T +VDF+A W P + P E + +KGKV KVD
Sbjct: 667 FNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAG 726
Query: 97 VSAVP 101
+ A P
Sbjct: 727 IKAYP 731
Score = 38.9 bits (89), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 47 PVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAM 106
P +VDFFA W P + L P L + G++ + +D L Y + A P +
Sbjct: 457 PWLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDCTIHEGLCNMYNIQAYPTTVVF 516
Query: 107 KNGKELDRLIGLQDIDKLKSFIDNL 131
N + G +++ FI++L
Sbjct: 517 -NQSSIHEYEGHHSAEQILEFIEDL 540
Score = 29.3 bits (64), Expect = 0.77, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 23/53 (43%)
Query: 49 IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVP 101
+VDF++ W +P + L P + + + G + + VD + V P
Sbjct: 567 MVDFYSPWSHPSQVLMPEWKRMARTLTGLINVGSVDCGQYHSFCTQENVQRYP 619
>pdb|2KUC|A Chain A, Solution Structure Of A Putative Disulphide-Isomerase From
Bacteroides Thetaiotaomicron
Length = 130
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 6/112 (5%)
Query: 19 LSVGSAVYTSFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTP---RLEAVIDEMK 75
+S+ A +F+ + K+ + + VD F TWC PCK L+ + V D
Sbjct: 1 MSLAQADGIAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFN 60
Query: 76 GKVVLAKVDID--ELTDLAMDYEVSAVPVLIAM-KNGKELDRLIGLQDIDKL 124
V K+D++ E +L Y V A P L+ + +G+ + RL+G +D +L
Sbjct: 61 RHFVNLKMDMEKGEGVELRKKYGVHAYPTLLFINSSGEVVYRLVGAEDAPEL 112
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
Length = 140
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 35/81 (43%)
Query: 37 FEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYE 96
+ ++V+++ PV+V F++ C CK P E E V +++I A Y
Sbjct: 16 WSQQVEDSKKPVVVXFYSPACPYCKAXEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYG 75
Query: 97 VSAVPVLIAMKNGKELDRLIG 117
V P +G+ + +G
Sbjct: 76 VQGTPTFKFFCHGRPVWEQVG 96
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic
Fungal Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic
Fungal Protein Disulfide Isomerase
Length = 121
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 5/42 (11%)
Query: 48 VIVDFFATWCNPCKTLTPRLEAVI-----DEMKGKVVLAKVD 84
V+++F+A WC CK L P+ E + E K +VV+AKVD
Sbjct: 28 VLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVD 69
>pdb|3GNJ|A Chain A, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|B Chain B, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|C Chain C, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|D Chain D, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
Length = 111
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 49/101 (48%)
Query: 33 DMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLA 92
D N FE+ + + +V F C+ C+ +TP LE + + VD++E L
Sbjct: 10 DTNTFEQLIYDEGKACLVXFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLF 69
Query: 93 MDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVE 133
+ + VP ++ K+G+ + G + D+++ I +++E
Sbjct: 70 QRFSLKGVPQILYFKDGEYKGKXAGDVEDDEVEQXIADVLE 110
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 47 PVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDID-ELTDLAMDYEVSAVPVLIA 105
PV++D F WC P K + P+ E + +E V+ K+D + E LA + + VP
Sbjct: 26 PVVLDMFTQWCGPSKAMAPKYEKLAEEYL-DVIFLKLDCNQENKTLAKELGIRVVPTFKI 84
Query: 106 MKNGKELDRLIGLQDIDKL 124
+K + + G + DKL
Sbjct: 85 LKENSVVGEVTGAK-YDKL 102
>pdb|1GH2|A Chain A, Crystal Structure Of The Catalytic Domain Of A New Human
Thioredoxin-Like Protein
Length = 107
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 36 DFEKKVKNASTPV-IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD 94
DF+ ++ A + + +V F C PC + P ++ ++ + V +VD+ + A
Sbjct: 11 DFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP-QAVFLEVDVHQCQGTAAT 69
Query: 95 YEVSAVPVLIAMKNGKELDRLIGLQDI---DKLKSFID 129
+SA P +N +D+ G + +K+K ++
Sbjct: 70 NNISATPTFQFFRNKVRIDQYQGADAVGLEEKIKQHLE 107
>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1
Length = 244
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 50 VDFFATWCNPCKTLTPRLEAVIDEMKG---KVVLAKVDIDELTDLAM--DYEVSAVPVL 103
V+FFA+WC C P A+ +++K + LA +D E T+ A+ D+ + P +
Sbjct: 35 VEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPTV 93
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 18 SLSVGSAVYTSFKVQDMNDFEKKVKNASTPVI-VDFFATWCNPCKTLTPRLEAVIDEMKG 76
SL G+ SF D+N + + I +D +ATWC PC+ P L+ + ++ G
Sbjct: 2 SLRSGNPSAASFSYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAG 61
Query: 77 K 77
K
Sbjct: 62 K 62
>pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
Length = 186
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 10/49 (20%)
Query: 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKV 78
K + ++DF K ++V+ +ATWC PC+ P L DE++GK+
Sbjct: 51 KPKKLSDFRGKT------LLVNLWATWCVPCRKEMPAL----DELQGKL 89
>pdb|3ERW|A Chain A, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|B Chain B, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|C Chain C, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|D Chain D, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|E Chain E, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|F Chain F, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|G Chain G, Crystal Structure Of Stoa From Bacillus Subtilis
Length = 145
Score = 34.3 bits (77), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/116 (19%), Positives = 46/116 (39%), Gaps = 27/116 (23%)
Query: 41 VKNASTPVIVDFFATWCNPCKTLTPRLEAVID-----------------EMKGKVVLAKV 83
+ N I+ F+ +WC PCK P+ ++ D E +VV +
Sbjct: 30 IPNKGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFI 89
Query: 84 DIDELT---------DLAMDYEVSAVPVLIAMKNGKELDRL-IGLQDIDKLKSFID 129
++LT +L +Y + +P + E+++ IG ++LK + +
Sbjct: 90 KANKLTFPIVLDSKGELXKEYHIITIPTSFLLNEKGEIEKTKIGPXTAEQLKEWTE 145
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 34.3 bits (77), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 36 DFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGK--VVLAKVD 84
+FE + V V+F+A WC CK L P + + + K +V+AK+D
Sbjct: 258 NFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMD 308
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 33.9 bits (76), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 36 DFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGK--VVLAKVD 84
+FE + V V+F+A WC CK L P + + + K +V+AK+D
Sbjct: 16 NFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMD 66
>pdb|3S9F|A Chain A, The Structure Of Tryparedoxin I From Leishmania Major
Length = 165
Score = 33.9 bits (76), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 48 VIVDFFATWCNPCKTLTPRL----EAVIDEMKGKVVLAKVDIDE 87
V F A+WC PC+ TP+L E D +++LA D +E
Sbjct: 51 VFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEE 94
>pdb|3OR5|A Chain A, Crystal Structure Of Thiol:disulfide Interchange
Protein, Thioredoxin Family Protein From Chlorobium
Tepidum Tls
Length = 165
Score = 33.5 bits (75), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 49 IVDFFATWCNPCKTLTP 65
IV+FFATWC PC++ P
Sbjct: 38 IVNFFATWCPPCRSEIP 54
>pdb|3CXG|A Chain A, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
pdb|3CXG|B Chain B, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
Length = 133
Score = 33.5 bits (75), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 22 GSAVYTSFK-VQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVL 80
G ++Y K +N +N+S +++ F A WC PC + + ++ V L
Sbjct: 18 GQSIYIELKNTGSLNQVFSSTQNSS--IVIKFGAVWCKPCNKIKEYFKNQLNYY--YVTL 73
Query: 81 AKVDIDELTDLAMDYEVSAVPVL 103
+D+D L + + A+P
Sbjct: 74 VDIDVDIHPKLNDQHNIKALPTF 96
>pdb|3KCM|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|B Chain B, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|C Chain C, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|D Chain D, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|E Chain E, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|F Chain F, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 154
Score = 33.1 bits (74), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 29/115 (25%)
Query: 48 VIVDFFATWCNPCKTLTP---RLEAV------------IDEMKGKVVLAK---------- 82
VIV+F+ATWC PC+ P RL A IDE GKV + +
Sbjct: 31 VIVNFWATWCPPCREEIPSXXRLNAAXAGKPFRXLCVSIDE-GGKVAVEEFFRKTGFTLP 89
Query: 83 VDIDELTDLAMDYEVSAVP-VLIAMKNGKELDRLIGLQDID--KLKSFIDNLVEK 134
V +D + Y + VP + ++G L +++G + D ++ +F++N + K
Sbjct: 90 VLLDADKRVGKLYGTTGVPETFVIDRHGVILKKVVGAXEWDHPEVIAFLNNELSK 144
>pdb|3LWA|A Chain A, The Crystal Structure Of A Secreted Thiol-Disulfide
Isomerase From Corynebacterium Glutamicum To 1.75a
Length = 183
Score = 33.1 bits (74), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 14/71 (19%)
Query: 33 DMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMK--------GKVVLAKVD 84
+++DFE +V VI++ + WC PC++ + L+ + +E++ G VL
Sbjct: 53 NLSDFENQV------VILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINV 106
Query: 85 IDELTDLAMDY 95
D D+A D+
Sbjct: 107 RDYSRDIAQDF 117
>pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|B Chain B, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|C Chain C, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|D Chain D, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
Length = 152
Score = 32.7 bits (73), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVV-LAKVDIDELTDLAMDYEVSAVPV--LI 104
V +DF+A+WC PC+ P + K K + V++D T A + ++ VP +
Sbjct: 31 VYLDFWASWCGPCRQSFPWXNQXQAKYKAKGFQVVAVNLDAKTGDAXKF-LAQVPAEFTV 89
Query: 105 AMKNGKELDRLIGLQ 119
A + RL G++
Sbjct: 90 AFDPKGQTPRLYGVK 104
>pdb|1OKD|A Chain A, Nmr-Structure Of Tryparedoxin 1
Length = 154
Score = 32.7 bits (73), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 35 NDFEKKVKNASTPVIVDFF-ATWCNPCKTLTPRLEAVIDEMK 75
D E +VK+ + ++ +F A+WC PC+ TP+L D+
Sbjct: 17 GDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFH 58
>pdb|1QK8|A Chain A, Tryparedoxin-I From Crithidia Fasciculata
pdb|1O7U|A Chain A, Radiation Induced Tryparedoxin-I
pdb|1O85|A Chain A, Radiation-Reduced Tryparedoxin-I
pdb|1O8W|A Chain A, Radiation-Reduced Tryparedoxin-I
Length = 146
Score = 32.7 bits (73), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 35 NDFEKKVKNASTPVIVDFF-ATWCNPCKTLTPRLEAVIDEMK 75
D E +VK+ + ++ +F A+WC PC+ TP+L D+
Sbjct: 17 GDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFH 58
>pdb|1EZK|A Chain A, Crystal Structure Of Recombinant Tryparedoxin I
Length = 153
Score = 32.3 bits (72), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 35 NDFEKKVKNASTPVIVDFF-ATWCNPCKTLTPRLEAVIDEMK 75
D E +VK+ + ++ +F A+WC PC+ TP+L D+
Sbjct: 16 GDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFH 57
>pdb|1EWX|A Chain A, Crystal Structure Of Native Tryparedoxin I From
Crithidia Fasciculata
Length = 146
Score = 32.3 bits (72), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 35 NDFEKKVKNASTPVIVDFF-ATWCNPCKTLTPRLEAVIDEMK 75
D E +VK+ + ++ +F A+WC PC+ TP+L D+
Sbjct: 17 GDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFH 58
>pdb|2L57|A Chain A, Solution Structure Of An Uncharacterized Thioredoin-Like
Protein From Clostridium Perfringens
Length = 126
Score = 32.3 bits (72), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 47 PVIVDFFATWCNPCKTLTPRLEAVIDEMKGK--VVLAKVDIDELTDLAMDYEVSAVPVLI 104
P I+ F C C + L V E +GK + A+++ ++ DLA Y+ + VP +
Sbjct: 28 PTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNIDLAYKYDANIVPTTV 87
Query: 105 AM-KNGKELDRLIGLQDIDKLKSFIDNLVEKQS 136
+ K G + GL + +++ +++L K+
Sbjct: 88 FLDKEGNKFYVHQGLMRKNNIETILNSLGVKEG 120
>pdb|2H1B|A Chain A, Resa E80q
pdb|2H1B|B Chain B, Resa E80q
pdb|2H1B|C Chain C, Resa E80q
pdb|2H1B|D Chain D, Resa E80q
Length = 143
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVV-LAKVDIDE 87
V ++F+ TWC PCK P + K + V + V++ E
Sbjct: 29 VFLNFWGTWCEPCKKQFPYMANQYKHFKSQGVEIVAVNVGE 69
>pdb|2K8V|A Chain A, Solution Structure Of Oxidised Erp18
Length = 157
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 20 SVGSAVYTSFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRL 67
+G + + D +K+ + P++V +WC CK L P+
Sbjct: 14 GLGKGFGDHIHWRTLEDGKKEAAASGLPLMVIIHKSWCGACKALKPKF 61
>pdb|1SEN|A Chain A, Endoplasmic Reticulum Protein Rp19 O95881
Length = 164
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 20 SVGSAVYTSFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRL 67
+G + + D +K+ + P++V +WC CK L P+
Sbjct: 21 GLGKGFGDHIHWRTLEDGKKEAAASGLPLMVIIHKSWCGACKALKPKF 68
>pdb|1ST9|A Chain A, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1ST9|B Chain B, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1SU9|A Chain A, Reduced Structure Of The Soluble Domain Of Resa
pdb|1SU9|B Chain B, Reduced Structure Of The Soluble Domain Of Resa
pdb|2H1D|A Chain A, Resa Ph 9.25
pdb|2H1D|B Chain B, Resa Ph 9.25
Length = 143
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVV-LAKVDIDE 87
V ++F+ TWC PCK P + K + V + V++ E
Sbjct: 29 VFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGE 69
>pdb|3IA1|A Chain A, Crystal Structure Of Thio-Disulfide Isomerase From
Thermus Thermophilus
pdb|3IA1|B Chain B, Crystal Structure Of Thio-Disulfide Isomerase From
Thermus Thermophilus
Length = 154
Score = 31.2 bits (69), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 45 STPVIVDFFATWCNPCKTLTPRLEAVIDE 73
S P ++ F+A+WC CK P L V +E
Sbjct: 30 SKPAVIVFWASWCTVCKAEFPGLHRVAEE 58
>pdb|1O81|A Chain A, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1O81|B Chain B, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1OC9|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 31.2 bits (69), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 44 ASTPVIVDFFATWCNPCKTLTPRL----EAVIDEMKGKVVLAKVDIDELTDLAMDYEVSA 99
A V F A+WC PC+ TP+L +A ++ +V+L + DE + DY
Sbjct: 30 AGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKKNFEVML--ISWDESAEDFKDYYAKM 87
Query: 100 VPVLIAMKNGKELDRLIGLQDIDKLKSFI 128
+ + ++ K ++ L D+ + + +
Sbjct: 88 PWLALPFEDRKGMEFLTTGFDVKSIPTLV 116
>pdb|1FG4|A Chain A, Structure Of Tryparedoxin Ii
pdb|1FG4|B Chain B, Structure Of Tryparedoxin Ii
Length = 149
Score = 31.2 bits (69), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 44 ASTPVIVDFFATWCNPCKTLTPRL----EAVIDEMKGKVVLAKVDIDELTDLAMDYEVSA 99
A V F A+WC PC+ TP+L +A ++ +V+L + DE + DY
Sbjct: 27 AGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKKNFEVML--ISWDESAEDFKDYYAKM 84
Query: 100 VPVLIAMKNGKELDRLIGLQDIDKLKSFI 128
+ + ++ K ++ L D+ + + +
Sbjct: 85 PWLALPFEDRKGMEFLTTGFDVKSIPTLV 113
>pdb|1O6J|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur
Phasing
pdb|1O6J|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur
Phasing
Length = 150
Score = 31.2 bits (69), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 44 ASTPVIVDFFATWCNPCKTLTPRL----EAVIDEMKGKVVLAKVDIDELTDLAMDYEVSA 99
A V F A+WC PC+ TP+L +A ++ +V+L + DE + DY
Sbjct: 28 AGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKKNFEVML--ISWDESAEDFKDYYAKM 85
Query: 100 VPVLIAMKNGKELDRLIGLQDIDKLKSFI 128
+ + ++ K ++ L D+ + + +
Sbjct: 86 PWLALPFEDRKGMEFLTTGFDVKSIPTLV 114
>pdb|1O73|A Chain A, Tryparedoxin From Trypanosoma Brucei
Length = 144
Score = 30.8 bits (68), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 28/98 (28%)
Query: 48 VIVDFFATWCNPCKTLTPRL-----------------------EAVIDEMKGKVVLAKVD 84
V + F A+WC PC+ TP L E+ + GK+ +
Sbjct: 31 VFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALP 90
Query: 85 IDE---LTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQ 119
D+ +++L + V ++P LI + + +IG Q
Sbjct: 91 FDQRSTVSELGKTFGVESIPTLITIN--ADTGAIIGTQ 126
>pdb|1OC9|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 30.8 bits (68), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 44 ASTPVIVDFFATWCNPCKTLTPRL----EAVIDEMKGKVVLAKVDIDELTDLAMDYEVSA 99
A V F A+WC PC+ TP+L +A + +V+L + DE + DY
Sbjct: 30 AGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAESKNFEVML--ISWDESAEDFKDYYAKM 87
Query: 100 VPVLIAMKNGKELDRLIGLQDIDKLKSFI 128
+ + ++ K ++ L D+ + + +
Sbjct: 88 PWLALPFEDRKGMEFLTTGFDVKSIPTLV 116
>pdb|4DVC|A Chain A, Structural And Functional Studies Of Tcpg, The Vibrio
Cholerae Dsba Disulfide-Forming Protein Required For
Pilus And Cholera Toxin Production
Length = 184
Score = 30.4 bits (67), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 40 KVKNASTPVIVDFFATWCNPCKTLTP 65
K +S+PV+ +FF+ +C C T P
Sbjct: 16 KTPASSSPVVSEFFSFYCPHCNTFEP 41
>pdb|2IJY|A Chain A, Nmr Structure Ensemble For The Reduced Dsba Disulphide
Oxidoreductase From Vibrio Cholerae
Length = 181
Score = 30.4 bits (67), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 40 KVKNASTPVIVDFFATWCNPCKTLTP 65
K +S+PV+ +FF+ +C C T P
Sbjct: 13 KTPASSSPVVSEFFSFYCPHCNTFEP 38
>pdb|1BED|A Chain A, Structure Of Disulfide Oxidoreductase
Length = 181
Score = 30.4 bits (67), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 40 KVKNASTPVIVDFFATWCNPCKTLTP 65
K +S+PV+ +FF+ +C C T P
Sbjct: 13 KTPASSSPVVSEFFSFYCPHCNTFEP 38
>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
Length = 519
Score = 30.4 bits (67), Expect = 0.38, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 23 SAVYTS---FKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG--- 76
S +Y+S + D + V +S+ V+FFA+WC P + + +++K
Sbjct: 5 SVLYSSSDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRP 64
Query: 77 KVVLAKVDIDELTDLAM--DYEVSAVPVL 103
+ LA +D E T+ A+ ++ ++ P +
Sbjct: 65 ALNLAVLDCAEETNSAVCREFNIAGFPTV 93
>pdb|2F9S|A Chain A, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|2F9S|B Chain B, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
Length = 151
Score = 30.0 bits (66), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVV-LAKVDIDE 87
V ++F+ TWC PCK P K + V + V++ E
Sbjct: 29 VFLNFWGTWCEPCKKEFPYXANQYKHFKSQGVEIVAVNVGE 69
>pdb|3HDC|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 158
Score = 30.0 bits (66), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 48 VIVDFFATWCNPCKTLTPRLEAVIDEM-KGKVVLAKVDIDE 87
V+V+F+A+WC C+ P + ++ KG +V+ V++++
Sbjct: 44 VLVNFWASWCPYCRDEXPSXDRLVKSFPKGDLVVLAVNVEK 84
>pdb|3KH7|A Chain A, Crystal Structure Of The Periplasmic Soluble Domain Of
Reduced Ccmg From Pseudomonas Aeruginosa
pdb|3KH9|A Chain A, Crystal Structure Of The Periplasmic Soluble Domain Of
Oxidized Ccmg From Pseudomonas Aeruginosa
Length = 176
Score = 30.0 bits (66), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 26 YTSFKVQDMNDFEKKVKNA---STPVIVDFFATWCNPCKTLTPRLEAVIDE 73
+ +F + + D +++ A P +V+ + TWC C+ P L + ++
Sbjct: 36 FPAFDLPSVQDPARRLTEADLKGKPALVNVWGTWCPSCRVEHPELTRLAEQ 86
>pdb|3NRN|A Chain A, Crystal Structure Of Pf1083 Protein From Pyrococcus
Furiosus, Northeast Structural Genomics Consortium
Target Pfr223
Length = 421
Score = 29.3 bits (64), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 56 WCNP------CKTLTPRLEAVIDEMKGKVVLAK----VDIDELTDLAMDYEVSAVPVLIA 105
W P CK + LE +I E KGK++ K ++I+E D E + V I+
Sbjct: 178 WGGPGLIRGGCKAVIDELERIIXENKGKILTRKEVVEINIEEKKVYTRDNEEYSFDVAIS 237
Query: 106 MKNGKELDRLIGLQDIDK 123
+E +LIG D+
Sbjct: 238 NVGVRETVKLIGRDYFDR 255
>pdb|3RAZ|A Chain A, The Crystal Structure Of Thioredoxin-Related Protein
From Neisseria Meningitidis Serogroup B
Length = 151
Score = 29.3 bits (64), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 49 IVDFFATWCNPCKTLTP 65
IV+ +ATWC PC+ P
Sbjct: 28 IVNLWATWCGPCRKEXP 44
>pdb|1O8X|A Chain A, Mutant Tryparedoxin-I Cys43ala
Length = 146
Score = 29.3 bits (64), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 35 NDFEKKVKNASTPVIVDFF-ATWCNPCKTLTPRLEAVIDEMK 75
D E +VK+ + ++ +F A+WC P + TP+L D+
Sbjct: 17 GDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFH 58
>pdb|2Q3L|A Chain A, Crystal Structure Of An Uncharacterized Protein From
Duf3478 Family With A Spoiiaa-Like Fold (Shew_3102) From
Shewanella Loihica Pv-4 At 2.25 A Resolution
pdb|2Q3L|B Chain B, Crystal Structure Of An Uncharacterized Protein From
Duf3478 Family With A Spoiiaa-Like Fold (Shew_3102) From
Shewanella Loihica Pv-4 At 2.25 A Resolution
Length = 126
Score = 28.9 bits (63), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 64 TPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDR--LIGLQDI 121
TP LE+ + +K ++A +DI EL L++ + + + +K+GKE R +IG ++
Sbjct: 39 TPLLESALAGIKTPEIVALIDITELDGLSL--HAAWDDLKLGLKHGKEFKRVAIIGQGEL 96
Query: 122 DKLKSFIDN 130
+ + + N
Sbjct: 97 QEWATRVAN 105
>pdb|3PQV|A Chain A, Cyclase Homolog
pdb|3PQV|B Chain B, Cyclase Homolog
pdb|3PQV|C Chain C, Cyclase Homolog
pdb|3PQV|D Chain D, Cyclase Homolog
Length = 365
Score = 28.9 bits (63), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 66 RLEAVIDEMKGKVV-LAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELD 113
RL V+ + GK + + K+ D+L DYEVS + ++ A+ NG ++
Sbjct: 18 RLRVVMATLSGKAIKIEKIRSDDLNPGLKDYEVSFLRLMEAVTNGSSIE 66
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 29/67 (43%)
Query: 43 NASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPV 102
N+ V+F++ C+ C L P E+ G + + V+ + L V++ P
Sbjct: 112 NSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPS 171
Query: 103 LIAMKNG 109
L ++G
Sbjct: 172 LFIFRSG 178
>pdb|2L6C|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Oxidized
Form
pdb|2L6D|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Reduced Form
Length = 110
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 49 IVDFFATWCNPCKTLTPRLEAVIDEMKGK---VVLAKVDIDELTDLAMDYEVSAVPVLIA 105
IV F C CK + E V+D+ + V ++ VD + +L + VP L+
Sbjct: 23 IVFFHKNLCPHCKNM----EKVLDKFGARAPQVAISSVDSEARPELMKELGFERVPTLVF 78
Query: 106 MKNGKELDRLIGLQDIDKLKS 126
+++GK G+ + +L++
Sbjct: 79 IRDGKVAKVFSGIMNPRELQA 99
>pdb|2LUS|A Chain A, Nmr Structure Of Carcinoscorpius Rotundicauda
Thioredoxin Related Protein 16 And Its Role In
Regulating Transcription Factor Nf-Kb Activity
Length = 143
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 49 IVDFF--ATWCNPCKTLTPRLEAVIDEM 74
I+ F+ A WC PC+ TP L + E+
Sbjct: 28 IIGFYFSAHWCPPCRGFTPILADMYSEL 55
>pdb|2JSD|A Chain A, Solution Structure Of Mmp20 Complexed With Nngh
Length = 160
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 62 TLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDI 121
TLT R+ M + V++D+ ++A+ SAVP+ N E D +I ++
Sbjct: 9 TLTYRISKYTPSM------SSVEVDKAVEMALQAWSSAVPLSFVRINSGEADIMISFENG 62
Query: 122 DKLKSF 127
D S+
Sbjct: 63 DHGDSY 68
>pdb|1FO5|A Chain A, Solution Structure Of Reduced Mj0307
Length = 85
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 52 FFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLI 104
F + C C +E V +EM V + +++ E AM+Y + AVP ++
Sbjct: 9 FTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIV 61
>pdb|2B1L|A Chain A, Crystal Structure Of N-Terminal 57 Residue Deletion
Mutant Of E. Coli Ccmg Protein(Residues 58-185)
pdb|2B1L|B Chain B, Crystal Structure Of N-Terminal 57 Residue Deletion
Mutant Of E. Coli Ccmg Protein(Residues 58-185)
Length = 129
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 34 MNDFEKKVKNASTPVIVDFFATWCNPCKT 62
M ++ V PV+++ +ATWC C+
Sbjct: 1 MQFYQADVLTQGKPVLLNVWATWCPTCRA 29
>pdb|3K8N|A Chain A, Crystal Structure Of E. Coli Ccmg
Length = 185
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 9/38 (23%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 29 FKVQDMND----FEKKVKNASTPVIVDFFATWCNPCKT 62
F+++ +++ ++ V PV+++ +ATWC C+
Sbjct: 48 FRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRA 85
>pdb|2G0F|A Chain A, Crystal Structure Of P144a Mutant Of E.Coli Ccmg Protein
Length = 168
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 9/38 (23%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 29 FKVQDMND----FEKKVKNASTPVIVDFFATWCNPCKT 62
F+++ +++ ++ V PV+++ +ATWC C+
Sbjct: 31 FRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRA 68
>pdb|2B1K|A Chain A, Crystal Structure Of E. Coli Ccmg Protein
Length = 168
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 9/38 (23%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 29 FKVQDMND----FEKKVKNASTPVIVDFFATWCNPCKT 62
F+++ +++ ++ V PV+++ +ATWC C+
Sbjct: 31 FRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRA 68
>pdb|1I5G|A Chain A, Tryparedoxin Ii Complexed With Glutathionylspermidine
Length = 144
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 44 ASTPVIVDFFATWCNPCKTLTPRL----EAVIDEMKGKVVLAKVDIDELTDLAMDYEVSA 99
A V F A+WC P + TP+L +A ++ +V+L + DE + DY
Sbjct: 27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVML--ISWDESAEDFKDYYAKM 84
Query: 100 VPVLIAMKNGKELDRLIGLQDIDKLKSFI 128
+ + ++ K ++ L D+ + + +
Sbjct: 85 PWLALPFEDRKGMEFLTTGFDVKSIPTLV 113
>pdb|1UC7|A Chain A, Crystal Structure Of Dsbdgamma
pdb|1UC7|B Chain B, Crystal Structure Of Dsbdgamma
Length = 125
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 41 VKNASTPVIVDFFATWCNPCK 61
V+ PV++D +A WC CK
Sbjct: 24 VEAKGKPVMLDLYADWCVACK 44
>pdb|2FWE|A Chain A, Crystal Structure Of The C-Terminal Domain Of The
Electron Transfer Catalyst Dsbd (Oxidized Form)
pdb|2FWF|A Chain A, High Resolution Crystal Structure Of The C-Terminal
Domain Of The Electron Transfer Catalyst Dsbd (Reduced
Form)
pdb|2FWG|A Chain A, High Resolution Crystal Structure Of The C-Terminal
Domain Of The Electron Transfer Catalyst Dsbd
(Photoreduced Form)
pdb|2FWH|A Chain A, Atomic Resolution Crystal Structure Of The C-Terminal
Domain Of The Electron Transfer Catalyst Dsbd (Reduced
Form At Ph7)
Length = 134
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 41 VKNASTPVIVDFFATWCNPCK 61
V+ PV++D +A WC CK
Sbjct: 27 VEAKGKPVMLDLYADWCVACK 47
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 15/71 (21%)
Query: 61 KTLTPRLEAVIDEMK-GKVVLAKVDIDE------LTDLAMDYEVSAVPVLIAMKNGKELD 113
K L EA+ + K GKV++ + IDE LT+L +DY++ V++ M GKE
Sbjct: 267 KILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDL----VMLTMFLGKERT 322
Query: 114 RLIGLQDIDKL 124
+ Q+ +KL
Sbjct: 323 K----QEWEKL 329
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 15/71 (21%)
Query: 61 KTLTPRLEAVIDEMK-GKVVLAKVDIDE------LTDLAMDYEVSAVPVLIAMKNGKELD 113
K L EA+ + K GKV++ + IDE LT+L +DY++ V++ M GKE
Sbjct: 270 KILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDL----VMLTMFLGKERT 325
Query: 114 RLIGLQDIDKL 124
+ Q+ +KL
Sbjct: 326 K----QEWEKL 332
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 15/71 (21%)
Query: 61 KTLTPRLEAVIDEMK-GKVVLAKVDIDE------LTDLAMDYEVSAVPVLIAMKNGKELD 113
K L EA+ + K GKV++ + IDE LT+L +DY++ V++ M GKE
Sbjct: 271 KILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDL----VMLTMFLGKERT 326
Query: 114 RLIGLQDIDKL 124
+ Q+ +KL
Sbjct: 327 K----QEWEKL 333
>pdb|2PMZ|A Chain A, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|2PMZ|Q Chain Q, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|3HKZ|A Chain A, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
pdb|3HKZ|I Chain I, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
Length = 880
Score = 26.9 bits (58), Expect = 3.9, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 59 PCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVS----AVPVLIAMKNGKELDR 114
P +TL RL+ +G + +VD T ++ D +S VP +IA +
Sbjct: 294 PLRTLAQRLKGKEGRFRGNLSGKRVDFSSRTVISPDPNISIDEVGVPEIIA--KTLTVPE 351
Query: 115 LIGLQDIDKLKSFIDNLVEKQSAVN 139
I +I+KL+ F+ N +K N
Sbjct: 352 RITPWNIEKLRQFVINGPDKWPGAN 376
>pdb|2WAQ|A Chain A, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|A Chain A, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|W Chain W, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2Y0S|A Chain A, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|2Y0S|W Chain W, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|4AYB|A Chain A, Rnap At 3.2ang
pdb|4B1O|A Chain A, Archaeal Rnap-Dna Binary Complex At 4.32ang
pdb|4B1P|W Chain W, Archaeal Rnap-Dna Binary Complex At 4.32ang
Length = 880
Score = 26.9 bits (58), Expect = 4.1, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 59 PCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVS----AVPVLIAMKNGKELDR 114
P +TL RL+ +G + +VD T ++ D +S VP +IA +
Sbjct: 294 PLRTLAQRLKGKEGRFRGNLSGKRVDFSSRTVISPDPNISIDEVGVPEIIA--RTLTVPE 351
Query: 115 LIGLQDIDKLKSFIDNLVEKQSAVN 139
I +I+KL+ F+ N +K N
Sbjct: 352 RITPWNIEKLRQFVINGPDKWPGAN 376
>pdb|3EH1|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24b
Length = 751
Score = 26.2 bits (56), Expect = 7.4, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 53 FATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDY 95
F TW + L+P L V DE K + I++ T+ A Y
Sbjct: 696 FITWLRDSRPLSPILHIVKDESPAKAEFFQHLIEDRTEAAFSY 738
>pdb|1QGV|A Chain A, Human Spliceosomal Protein U5-15kd
pdb|1SYX|A Chain A, The Crystal Structure Of A Binary U5 Snrnp Complex
pdb|1SYX|C Chain C, The Crystal Structure Of A Binary U5 Snrnp Complex
pdb|1SYX|E Chain E, The Crystal Structure Of A Binary U5 Snrnp Complex
Length = 142
Score = 25.8 bits (55), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEV 97
V++ F W C + L ++ +++K V+ VDI E+ D YE+
Sbjct: 26 VVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYEL 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,724,486
Number of Sequences: 62578
Number of extensions: 138364
Number of successful extensions: 661
Number of sequences better than 100.0: 215
Number of HSP's better than 100.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 409
Number of HSP's gapped (non-prelim): 222
length of query: 141
length of database: 14,973,337
effective HSP length: 89
effective length of query: 52
effective length of database: 9,403,895
effective search space: 489002540
effective search space used: 489002540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)