Query psy11159
Match_columns 141
No_of_seqs 149 out of 1884
Neff 10.4
Searched_HMMs 46136
Date Fri Aug 16 19:30:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11159.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11159hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0910|consensus 100.0 1.2E-29 2.7E-34 156.5 12.6 108 26-133 42-149 (150)
2 PF00085 Thioredoxin: Thioredo 99.9 6.3E-26 1.4E-30 135.4 14.1 102 30-131 2-103 (103)
3 PHA02278 thioredoxin-like prot 99.9 7.7E-26 1.7E-30 134.6 12.7 95 32-127 2-100 (103)
4 cd02954 DIM1 Dim1 family; Dim1 99.9 3.3E-26 7.2E-31 137.3 10.7 98 34-131 2-110 (114)
5 cd03065 PDI_b_Calsequestrin_N 99.9 1.6E-25 3.4E-30 136.2 12.6 103 29-132 11-119 (120)
6 cd03006 PDI_a_EFP1_N PDIa fami 99.9 2.3E-25 5E-30 134.6 12.6 100 27-127 10-112 (113)
7 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 1.4E-25 3E-30 134.4 11.5 98 31-128 5-104 (104)
8 cd02956 ybbN ybbN protein fami 99.9 5.3E-25 1.2E-29 130.1 11.9 94 36-129 2-96 (96)
9 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 4.7E-25 1E-29 131.5 11.4 96 31-127 5-100 (101)
10 cd02985 TRX_CDSP32 TRX family, 99.9 1.1E-24 2.4E-29 130.3 12.9 96 33-130 2-101 (103)
11 PRK09381 trxA thioredoxin; Pro 99.9 1.5E-24 3.3E-29 130.9 13.6 105 28-133 5-109 (109)
12 KOG0907|consensus 99.9 1.6E-24 3.4E-29 129.1 12.1 97 33-131 9-105 (106)
13 PLN00410 U5 snRNP protein, DIM 99.9 2.3E-24 5.1E-29 133.9 12.9 107 28-134 5-122 (142)
14 cd02963 TRX_DnaJ TRX domain, D 99.9 1.5E-24 3.3E-29 131.3 11.4 98 33-130 10-110 (111)
15 cd02948 TRX_NDPK TRX domain, T 99.9 4.1E-24 9E-29 127.6 13.1 98 30-130 3-101 (102)
16 COG3118 Thioredoxin domain-con 99.9 2E-24 4.3E-29 146.4 11.4 106 29-134 25-132 (304)
17 PRK10996 thioredoxin 2; Provis 99.9 2.8E-23 6.2E-28 130.3 15.2 100 32-132 40-139 (139)
18 cd02999 PDI_a_ERp44_like PDIa 99.9 6.2E-24 1.3E-28 126.2 10.7 90 37-128 9-100 (100)
19 cd03002 PDI_a_MPD1_like PDI fa 99.9 1.2E-23 2.7E-28 126.9 11.7 99 31-129 4-109 (109)
20 cd02996 PDI_a_ERp44 PDIa famil 99.9 1.2E-23 2.6E-28 126.8 11.6 97 31-128 5-108 (108)
21 PTZ00443 Thioredoxin domain-co 99.9 2.8E-23 6.2E-28 138.7 14.4 109 28-136 31-143 (224)
22 TIGR01068 thioredoxin thioredo 99.9 4.7E-23 1E-27 122.5 13.2 99 33-131 2-100 (101)
23 cd02965 HyaE HyaE family; HyaE 99.9 2.3E-23 4.9E-28 124.3 11.6 93 32-125 15-109 (111)
24 cd03005 PDI_a_ERp46 PDIa famil 99.9 7.9E-23 1.7E-27 121.9 12.4 95 32-128 5-102 (102)
25 cd02989 Phd_like_TxnDC9 Phosdu 99.9 1.4E-22 3E-27 122.9 13.3 90 27-118 5-94 (113)
26 cd03001 PDI_a_P5 PDIa family, 99.9 1E-22 2.2E-27 121.6 12.4 98 31-128 4-102 (103)
27 cd02984 TRX_PICOT TRX domain, 99.9 1.1E-22 2.5E-27 120.2 12.2 95 33-128 1-96 (97)
28 cd02994 PDI_a_TMX PDIa family, 99.9 1E-22 2.2E-27 121.3 12.1 95 32-130 6-101 (101)
29 cd02949 TRX_NTR TRX domain, no 99.9 2.3E-22 4.9E-27 119.0 12.5 94 36-129 4-97 (97)
30 TIGR01126 pdi_dom protein disu 99.9 1.4E-22 3.1E-27 120.6 11.5 98 33-131 2-101 (102)
31 cd02950 TxlA TRX-like protein 99.9 5.2E-22 1.1E-26 124.9 13.1 100 35-135 11-113 (142)
32 cd02957 Phd_like Phosducin (Ph 99.9 7.5E-23 1.6E-27 124.3 8.9 89 28-119 6-96 (113)
33 cd02997 PDI_a_PDIR PDIa family 99.9 6.2E-22 1.3E-26 118.4 12.7 96 32-128 5-104 (104)
34 cd02986 DLP Dim1 family, Dim1- 99.9 3.7E-22 8E-27 119.1 11.4 98 34-131 2-110 (114)
35 cd02962 TMX2 TMX2 family; comp 99.9 1.1E-21 2.3E-26 124.1 13.3 90 28-117 29-126 (152)
36 KOG0908|consensus 99.9 2.8E-22 6E-27 132.5 10.7 111 27-139 2-113 (288)
37 cd02995 PDI_a_PDI_a'_C PDIa fa 99.9 4.9E-22 1.1E-26 118.8 11.0 98 30-128 3-104 (104)
38 cd02998 PDI_a_ERp38 PDIa famil 99.9 7E-22 1.5E-26 118.2 10.8 97 32-128 5-105 (105)
39 PTZ00051 thioredoxin; Provisio 99.9 2E-21 4.3E-26 115.1 12.3 96 28-126 2-97 (98)
40 cd02987 Phd_like_Phd Phosducin 99.9 3E-21 6.4E-26 125.2 13.2 104 25-130 61-173 (175)
41 cd02953 DsbDgamma DsbD gamma f 99.9 7.2E-22 1.6E-26 118.3 9.3 94 35-129 2-104 (104)
42 cd03000 PDI_a_TMX3 PDIa family 99.9 7.1E-21 1.5E-25 114.0 11.8 94 35-131 7-103 (104)
43 cd02993 PDI_a_APS_reductase PD 99.9 7E-21 1.5E-25 114.9 11.6 99 30-128 4-109 (109)
44 cd02961 PDI_a_family Protein D 99.9 8.5E-21 1.8E-25 112.4 10.4 95 33-128 4-101 (101)
45 cd02951 SoxW SoxW family; SoxW 99.9 2.1E-20 4.5E-25 115.4 12.4 99 35-134 4-121 (125)
46 cd02975 PfPDO_like_N Pyrococcu 99.9 1.5E-20 3.2E-25 114.1 11.4 95 37-133 15-111 (113)
47 TIGR01295 PedC_BrcD bacterioci 99.9 3.9E-20 8.4E-25 113.5 12.6 98 29-129 8-121 (122)
48 PTZ00102 disulphide isomerase; 99.8 5E-20 1.1E-24 136.2 13.0 110 27-136 357-469 (477)
49 cd02947 TRX_family TRX family; 99.8 1.3E-19 2.9E-24 105.4 11.7 91 36-128 2-92 (93)
50 KOG0190|consensus 99.8 3.4E-20 7.3E-25 134.5 9.6 109 26-135 24-135 (493)
51 cd02992 PDI_a_QSOX PDIa family 99.8 5.7E-19 1.2E-23 107.3 11.0 81 30-110 4-89 (114)
52 cd02988 Phd_like_VIAF Phosduci 99.8 6.9E-19 1.5E-23 115.5 12.2 99 27-130 83-190 (192)
53 PTZ00062 glutaredoxin; Provisi 99.8 7.1E-19 1.5E-23 116.0 11.8 93 32-134 4-96 (204)
54 TIGR01130 ER_PDI_fam protein d 99.8 8.5E-19 1.8E-23 129.0 13.2 104 30-134 4-111 (462)
55 cd02952 TRP14_like Human TRX-r 99.8 5.4E-19 1.2E-23 107.3 9.4 83 30-112 5-103 (119)
56 TIGR00424 APS_reduc 5'-adenyly 99.8 1.2E-18 2.5E-23 126.9 12.5 104 28-131 352-462 (463)
57 PTZ00102 disulphide isomerase; 99.8 1.6E-18 3.5E-23 128.2 13.5 105 28-134 33-140 (477)
58 PLN02309 5'-adenylylsulfate re 99.8 2.1E-18 4.4E-23 125.6 13.0 104 28-131 346-456 (457)
59 cd03007 PDI_a_ERp29_N PDIa fam 99.8 1.9E-18 4.1E-23 104.1 9.4 96 31-131 5-115 (116)
60 TIGR00411 redox_disulf_1 small 99.8 5E-18 1.1E-22 97.3 10.7 80 48-131 2-81 (82)
61 cd02982 PDI_b'_family Protein 99.8 1.8E-18 3.8E-23 103.3 8.7 87 45-131 12-102 (103)
62 KOG0190|consensus 99.8 2.8E-18 6.1E-23 124.6 8.8 105 27-133 366-474 (493)
63 cd02959 ERp19 Endoplasmic reti 99.8 2.8E-18 6E-23 104.6 6.9 101 33-133 7-114 (117)
64 TIGR01130 ER_PDI_fam protein d 99.7 2.2E-17 4.7E-22 121.5 11.6 106 28-135 347-457 (462)
65 TIGR02187 GlrX_arch Glutaredox 99.7 7.3E-17 1.6E-21 108.2 11.0 89 45-133 19-112 (215)
66 PF13098 Thioredoxin_2: Thiore 99.7 1.7E-17 3.7E-22 100.4 6.8 86 43-128 3-112 (112)
67 PRK00293 dipZ thiol:disulfide 99.7 1.1E-16 2.4E-21 120.4 12.2 104 28-132 454-570 (571)
68 cd02955 SSP411 TRX domain, SSP 99.7 2E-16 4.4E-21 97.0 10.9 99 34-133 5-120 (124)
69 KOG0912|consensus 99.7 3.5E-17 7.5E-22 111.4 8.1 100 34-134 3-108 (375)
70 PRK15412 thiol:disulfide inter 99.7 2.2E-16 4.7E-21 103.6 11.2 92 44-138 67-182 (185)
71 TIGR02187 GlrX_arch Glutaredox 99.7 4.9E-16 1.1E-20 104.2 11.6 85 42-130 129-214 (215)
72 TIGR02738 TrbB type-F conjugat 99.7 7.1E-16 1.5E-20 97.9 10.9 87 44-132 49-153 (153)
73 PRK14018 trifunctional thiored 99.7 9.3E-16 2E-20 113.2 11.9 88 43-130 54-171 (521)
74 PHA02125 thioredoxin-like prot 99.7 1.2E-15 2.5E-20 86.0 9.6 71 49-128 2-73 (75)
75 TIGR00385 dsbE periplasmic pro 99.7 1.4E-15 3.1E-20 98.8 11.1 87 44-133 62-172 (173)
76 TIGR00412 redox_disulf_2 small 99.7 1.2E-15 2.6E-20 86.1 9.3 72 50-128 3-75 (76)
77 TIGR02740 TraF-like TraF-like 99.7 2E-15 4.4E-20 104.1 12.3 89 44-134 165-266 (271)
78 KOG0191|consensus 99.7 7.3E-16 1.6E-20 111.4 10.5 104 34-137 36-139 (383)
79 PRK11509 hydrogenase-1 operon 99.7 6.3E-15 1.4E-19 90.5 13.0 102 34-136 24-128 (132)
80 cd02958 UAS UAS family; UAS is 99.6 1E-14 2.2E-19 88.6 12.2 102 33-134 5-113 (114)
81 KOG4277|consensus 99.6 9E-16 1.9E-20 104.8 7.6 86 45-131 43-131 (468)
82 cd03010 TlpA_like_DsbE TlpA-li 99.6 3.9E-15 8.4E-20 92.0 9.3 79 44-124 24-126 (127)
83 cd03008 TryX_like_RdCVF Trypar 99.6 4.5E-15 9.7E-20 93.3 9.3 71 44-114 24-128 (146)
84 PRK03147 thiol-disulfide oxido 99.6 1.8E-14 3.9E-19 93.4 11.8 88 44-131 60-171 (173)
85 PF13905 Thioredoxin_8: Thiore 99.6 6E-15 1.3E-19 86.7 8.7 66 45-110 1-94 (95)
86 cd02973 TRX_GRX_like Thioredox 99.6 7.6E-15 1.6E-19 80.9 8.0 62 48-112 2-63 (67)
87 cd03026 AhpF_NTD_C TRX-GRX-lik 99.6 3.1E-14 6.8E-19 82.6 10.0 75 45-124 12-86 (89)
88 PLN02919 haloacid dehalogenase 99.6 1.9E-14 4E-19 114.7 11.9 90 44-133 419-537 (1057)
89 KOG1731|consensus 99.6 1.3E-15 2.9E-20 111.2 4.1 107 27-133 39-154 (606)
90 cd03009 TryX_like_TryX_NRX Try 99.6 2.4E-14 5.1E-19 89.0 8.7 71 44-114 17-115 (131)
91 cd02964 TryX_like_family Trypa 99.6 2.4E-14 5.2E-19 89.1 8.7 71 44-114 16-115 (132)
92 cd03011 TlpA_like_ScsD_MtbDsbE 99.6 7.1E-14 1.5E-18 85.8 10.0 82 44-127 19-121 (123)
93 PRK13728 conjugal transfer pro 99.6 1.4E-13 3.1E-18 89.0 11.6 85 49-135 73-174 (181)
94 cd02960 AGR Anterior Gradient 99.5 4.5E-14 9.8E-19 86.7 7.9 85 33-118 11-99 (130)
95 cd02966 TlpA_like_family TlpA- 99.5 2.2E-13 4.7E-18 82.0 9.2 73 45-117 19-116 (116)
96 KOG0191|consensus 99.5 1.6E-13 3.4E-18 99.3 9.7 106 29-134 146-254 (383)
97 PF08534 Redoxin: Redoxin; In 99.5 5.7E-13 1.2E-17 84.2 10.4 83 44-126 27-144 (146)
98 cd02967 mauD Methylamine utili 99.5 3.3E-13 7.2E-18 81.8 8.9 70 44-113 20-110 (114)
99 smart00594 UAS UAS domain. 99.5 1.3E-12 2.7E-17 80.3 11.5 102 27-128 9-121 (122)
100 COG4232 Thiol:disulfide interc 99.5 2.4E-13 5.2E-18 100.3 9.4 102 29-131 457-567 (569)
101 cd03012 TlpA_like_DipZ_like Tl 99.5 6.1E-13 1.3E-17 82.1 9.4 75 44-118 22-125 (126)
102 TIGR01626 ytfJ_HI0045 conserve 99.5 6.8E-13 1.5E-17 86.3 9.6 82 44-128 58-176 (184)
103 PTZ00056 glutathione peroxidas 99.4 1.3E-12 2.9E-17 86.5 9.8 91 44-134 38-180 (199)
104 PF13899 Thioredoxin_7: Thiore 99.4 7.1E-13 1.5E-17 75.9 6.8 75 32-107 4-81 (82)
105 TIGR02661 MauD methylamine deh 99.4 4.4E-12 9.5E-17 83.5 10.7 89 44-133 73-180 (189)
106 PLN02399 phospholipid hydroper 99.4 4.8E-12 1E-16 85.5 10.7 90 44-133 98-235 (236)
107 PLN02412 probable glutathione 99.4 1.9E-11 4.1E-16 79.0 10.4 91 44-134 28-166 (167)
108 cd02969 PRX_like1 Peroxiredoxi 99.3 3.9E-11 8.6E-16 77.8 11.6 93 44-136 24-156 (171)
109 TIGR02540 gpx7 putative glutat 99.3 2.1E-11 4.5E-16 77.7 9.6 89 44-132 21-153 (153)
110 COG2143 Thioredoxin-related pr 99.3 8.7E-11 1.9E-15 73.2 10.9 93 41-133 38-150 (182)
111 COG0526 TrxA Thiol-disulfide i 99.3 3E-11 6.4E-16 72.6 8.2 85 45-129 32-121 (127)
112 PF02114 Phosducin: Phosducin; 99.3 9.8E-11 2.1E-15 80.5 10.6 92 25-118 124-217 (265)
113 PF13728 TraF: F plasmid trans 99.3 1.9E-10 4.1E-15 77.0 11.4 82 45-128 120-214 (215)
114 cd00340 GSH_Peroxidase Glutath 99.3 4.9E-11 1.1E-15 75.9 8.2 83 44-127 21-151 (152)
115 PF06110 DUF953: Eukaryotic pr 99.2 1.5E-10 3.2E-15 70.2 8.9 79 31-109 2-99 (119)
116 PF14595 Thioredoxin_9: Thiore 99.2 1.3E-10 2.7E-15 71.9 8.8 74 44-118 40-117 (129)
117 TIGR02196 GlrX_YruB Glutaredox 99.2 1.3E-10 2.7E-15 64.7 7.7 69 49-129 2-74 (74)
118 KOG0914|consensus 99.2 3.7E-11 8.1E-16 78.7 5.9 89 28-116 126-222 (265)
119 KOG2501|consensus 99.2 7.5E-11 1.6E-15 74.0 6.8 70 44-113 32-130 (157)
120 KOG1672|consensus 99.2 6.9E-11 1.5E-15 76.1 6.5 92 26-119 66-157 (211)
121 PF03190 Thioredox_DsbH: Prote 99.2 2E-10 4.3E-15 73.1 8.5 106 27-132 19-141 (163)
122 cd02991 UAS_ETEA UAS family, E 99.2 1.7E-09 3.7E-14 65.7 12.3 99 33-134 5-115 (116)
123 KOG3414|consensus 99.2 1.3E-10 2.9E-15 69.7 6.7 103 30-132 7-120 (142)
124 cd03017 PRX_BCP Peroxiredoxin 99.2 4.4E-10 9.5E-15 70.3 9.4 84 45-128 23-139 (140)
125 PF02966 DIM1: Mitosis protein 99.2 6.5E-09 1.4E-13 63.2 13.7 103 30-133 4-118 (133)
126 TIGR02200 GlrX_actino Glutared 99.2 2.9E-10 6.3E-15 64.0 7.4 70 49-129 2-76 (77)
127 PTZ00256 glutathione peroxidas 99.1 6.5E-10 1.4E-14 72.9 9.7 90 44-133 39-182 (183)
128 PF13192 Thioredoxin_3: Thiore 99.1 1.8E-09 4E-14 60.8 9.5 72 51-129 4-76 (76)
129 TIGR02739 TraF type-F conjugat 99.1 3.8E-09 8.3E-14 72.1 12.3 89 45-135 150-251 (256)
130 TIGR02180 GRX_euk Glutaredoxin 99.1 1.1E-09 2.4E-14 62.6 7.4 60 49-112 1-65 (84)
131 PF00578 AhpC-TSA: AhpC/TSA fa 99.1 2.2E-09 4.8E-14 65.7 9.1 70 44-113 24-123 (124)
132 PRK10877 protein disulfide iso 99.1 1.2E-09 2.6E-14 74.0 8.4 82 44-132 106-231 (232)
133 KOG3425|consensus 99.1 1.5E-09 3.3E-14 64.7 7.6 76 33-108 11-104 (128)
134 cd01659 TRX_superfamily Thiore 99.1 1.5E-09 3.2E-14 58.1 7.1 60 49-109 1-63 (69)
135 PF11009 DUF2847: Protein of u 99.0 7.6E-09 1.7E-13 61.1 10.2 96 29-124 2-104 (105)
136 cd03015 PRX_Typ2cys Peroxiredo 99.0 7.4E-09 1.6E-13 67.3 10.6 88 44-131 28-156 (173)
137 PRK00522 tpx lipid hydroperoxi 99.0 4.9E-09 1.1E-13 67.8 9.3 73 44-117 43-149 (167)
138 cd03014 PRX_Atyp2cys Peroxired 99.0 5.3E-09 1.1E-13 65.8 8.9 84 44-128 25-141 (143)
139 PRK11200 grxA glutaredoxin 1; 99.0 7.8E-09 1.7E-13 59.4 8.7 76 48-132 2-83 (85)
140 PRK13703 conjugal pilus assemb 99.0 1.9E-08 4.1E-13 68.4 11.4 88 45-134 143-243 (248)
141 PRK09437 bcp thioredoxin-depen 99.0 1.6E-08 3.4E-13 64.4 10.3 86 44-129 29-150 (154)
142 TIGR03137 AhpC peroxiredoxin. 98.9 2.1E-08 4.6E-13 65.9 10.5 88 44-131 30-155 (187)
143 cd03018 PRX_AhpE_like Peroxire 98.9 2.6E-08 5.6E-13 63.0 9.7 83 46-128 29-147 (149)
144 cd02970 PRX_like2 Peroxiredoxi 98.9 4.5E-08 9.6E-13 61.7 9.8 43 45-87 23-67 (149)
145 KOG0913|consensus 98.9 1.2E-09 2.5E-14 72.5 2.4 100 28-131 25-125 (248)
146 PRK10606 btuE putative glutath 98.9 2.6E-08 5.6E-13 65.2 8.6 42 44-86 24-66 (183)
147 PF13848 Thioredoxin_6: Thiore 98.9 9.7E-08 2.1E-12 62.2 11.3 102 28-130 78-184 (184)
148 PRK13190 putative peroxiredoxi 98.8 8.5E-08 1.8E-12 63.8 10.6 90 44-133 26-155 (202)
149 KOG0911|consensus 98.8 3.9E-09 8.5E-14 69.7 4.1 90 29-122 4-93 (227)
150 TIGR03143 AhpF_homolog putativ 98.8 7.9E-08 1.7E-12 73.0 11.2 83 41-128 471-554 (555)
151 cd02968 SCO SCO (an acronym fo 98.8 3.1E-08 6.7E-13 62.1 7.6 43 44-86 21-68 (142)
152 PRK10382 alkyl hydroperoxide r 98.8 1.5E-07 3.3E-12 61.8 11.0 89 44-132 30-156 (187)
153 PRK11657 dsbG disulfide isomer 98.8 5E-08 1.1E-12 67.0 9.0 83 45-129 117-249 (251)
154 cd03020 DsbA_DsbC_DsbG DsbA fa 98.8 2.6E-08 5.7E-13 66.0 7.2 76 45-128 77-197 (197)
155 TIGR02183 GRXA Glutaredoxin, G 98.8 5.8E-08 1.3E-12 55.9 7.6 74 49-131 2-81 (86)
156 PRK15000 peroxidase; Provision 98.8 2E-07 4.2E-12 62.0 11.1 89 44-132 33-162 (200)
157 cd02971 PRX_family Peroxiredox 98.8 7.9E-08 1.7E-12 60.0 8.6 77 44-120 21-131 (140)
158 cd02976 NrdH NrdH-redoxin (Nrd 98.8 1E-07 2.2E-12 52.6 7.7 68 49-128 2-73 (73)
159 PF07449 HyaE: Hydrogenase-1 e 98.8 1.2E-07 2.6E-12 56.3 8.2 92 30-123 12-106 (107)
160 cd03023 DsbA_Com1_like DsbA fa 98.7 1.3E-07 2.9E-12 59.8 7.9 39 44-83 4-42 (154)
161 TIGR02190 GlrX-dom Glutaredoxi 98.7 2.1E-07 4.6E-12 52.7 7.8 69 46-128 7-78 (79)
162 cd02983 P5_C P5 family, C-term 98.7 1.2E-06 2.6E-11 54.3 11.6 109 27-136 3-119 (130)
163 PRK15317 alkyl hydroperoxide r 98.7 3E-07 6.4E-12 69.3 10.6 86 41-131 111-197 (517)
164 PF00462 Glutaredoxin: Glutare 98.7 1.6E-07 3.4E-12 50.3 6.4 55 49-111 1-59 (60)
165 PF13462 Thioredoxin_4: Thiore 98.6 1.2E-06 2.6E-11 56.0 10.9 82 44-130 11-162 (162)
166 cd03419 GRX_GRXh_1_2_like Glut 98.6 3.9E-07 8.6E-12 51.7 7.4 58 49-112 2-64 (82)
167 PRK13599 putative peroxiredoxi 98.6 1.4E-06 3E-11 58.6 10.3 88 45-132 28-156 (215)
168 cd03029 GRX_hybridPRX5 Glutare 98.6 7.3E-07 1.6E-11 49.5 7.5 66 49-128 3-71 (72)
169 PRK10954 periplasmic protein d 98.6 9.1E-07 2E-11 59.1 9.1 40 45-84 37-79 (207)
170 PTZ00137 2-Cys peroxiredoxin; 98.6 2.4E-06 5.1E-11 58.9 11.1 89 44-132 97-225 (261)
171 cd03016 PRX_1cys Peroxiredoxin 98.6 1.5E-06 3.3E-11 57.9 9.9 88 46-133 26-155 (203)
172 PRK13189 peroxiredoxin; Provis 98.6 2E-06 4.3E-11 58.1 10.6 89 44-132 34-163 (222)
173 cd03019 DsbA_DsbA DsbA family, 98.5 1.2E-06 2.7E-11 56.8 9.4 40 44-83 14-53 (178)
174 PRK13191 putative peroxiredoxi 98.5 2.4E-06 5.2E-11 57.4 10.8 89 44-132 32-161 (215)
175 TIGR02194 GlrX_NrdH Glutaredox 98.5 6.7E-07 1.4E-11 49.7 6.7 66 50-126 2-70 (72)
176 cd03072 PDI_b'_ERp44 PDIb' fam 98.5 1.7E-06 3.8E-11 52.2 9.0 101 31-134 3-110 (111)
177 PRK10329 glutaredoxin-like pro 98.5 4.2E-06 9.1E-11 47.6 9.3 72 49-132 3-77 (81)
178 PHA03050 glutaredoxin; Provisi 98.5 1.7E-06 3.8E-11 51.9 8.0 60 49-113 15-81 (108)
179 cd03027 GRX_DEP Glutaredoxin ( 98.5 1.4E-06 3.1E-11 48.5 7.1 57 49-113 3-63 (73)
180 TIGR03140 AhpF alkyl hydropero 98.5 3.7E-06 8E-11 63.4 11.0 82 45-131 117-198 (515)
181 cd02066 GRX_family Glutaredoxi 98.4 1.5E-06 3.4E-11 47.6 6.8 57 49-113 2-62 (72)
182 TIGR02189 GlrX-like_plant Glut 98.4 9.4E-07 2E-11 52.2 5.9 57 49-113 10-73 (99)
183 TIGR02181 GRX_bact Glutaredoxi 98.4 1.5E-06 3.3E-11 49.0 6.6 56 49-112 1-60 (79)
184 PF05768 DUF836: Glutaredoxin- 98.4 9.3E-07 2E-11 50.3 5.6 78 49-129 2-81 (81)
185 cd03418 GRX_GRXb_1_3_like Glut 98.4 2.8E-06 6E-11 47.4 6.6 56 49-112 2-62 (75)
186 PTZ00253 tryparedoxin peroxida 98.4 1.5E-05 3.2E-10 53.0 10.8 89 44-132 35-164 (199)
187 PF01216 Calsequestrin: Calseq 98.3 3.1E-05 6.7E-10 54.8 12.3 105 28-134 35-146 (383)
188 TIGR03143 AhpF_homolog putativ 98.3 1.2E-05 2.6E-10 61.2 11.0 102 33-135 353-457 (555)
189 cd02981 PDI_b_family Protein D 98.3 1.8E-05 3.8E-10 46.3 9.4 93 30-130 3-96 (97)
190 TIGR00365 monothiol glutaredox 98.3 2.2E-05 4.7E-10 46.2 9.3 51 55-113 25-79 (97)
191 cd03073 PDI_b'_ERp72_ERp57 PDI 98.3 1E-05 2.2E-10 48.8 8.0 74 58-131 31-110 (111)
192 COG0695 GrxC Glutaredoxin and 98.3 1E-05 2.2E-10 45.9 7.3 66 49-125 3-74 (80)
193 PRK10638 glutaredoxin 3; Provi 98.2 1.3E-05 2.8E-10 45.7 6.2 57 49-113 4-64 (83)
194 cd02972 DsbA_family DsbA famil 98.1 1.7E-05 3.7E-10 45.9 6.4 58 49-106 1-90 (98)
195 cd03028 GRX_PICOT_like Glutare 98.1 5.2E-05 1.1E-09 44.0 8.1 50 55-112 21-74 (90)
196 KOG3171|consensus 98.1 2.7E-05 5.9E-10 51.5 7.3 91 22-114 134-226 (273)
197 KOG2603|consensus 98.1 6E-05 1.3E-09 52.5 9.2 106 27-134 41-168 (331)
198 COG1331 Highly conserved prote 98.1 2.1E-05 4.6E-10 60.0 7.5 100 32-132 31-147 (667)
199 PF00837 T4_deiodinase: Iodoth 98.0 0.00014 2.9E-09 49.2 8.9 106 23-131 79-236 (237)
200 PRK10824 glutaredoxin-4; Provi 97.9 0.00013 2.8E-09 44.2 7.0 51 55-113 28-82 (115)
201 cd03067 PDI_b_PDIR_N PDIb fami 97.8 0.00033 7.1E-09 41.0 8.1 100 29-130 4-110 (112)
202 KOG3170|consensus 97.8 0.00028 6.2E-09 46.3 8.6 102 26-132 91-201 (240)
203 KOG1752|consensus 97.8 0.00014 3.1E-09 43.2 6.7 58 49-112 16-78 (104)
204 PRK12759 bifunctional gluaredo 97.7 0.00014 2.9E-09 53.6 6.7 56 49-112 4-71 (410)
205 cd03066 PDI_b_Calsequestrin_mi 97.7 0.0023 5E-08 37.8 10.2 96 29-131 3-100 (102)
206 PTZ00062 glutaredoxin; Provisi 97.6 0.00037 8E-09 46.5 7.2 51 55-113 126-180 (204)
207 PF13743 Thioredoxin_5: Thiore 97.6 0.00046 1E-08 45.0 7.1 33 51-83 2-34 (176)
208 PF13848 Thioredoxin_6: Thiore 97.6 0.0013 2.7E-08 42.8 8.8 66 63-132 8-75 (184)
209 cd03031 GRX_GRX_like Glutaredo 97.5 0.0012 2.6E-08 41.7 8.0 57 49-113 2-72 (147)
210 PF07912 ERp29_N: ERp29, N-ter 97.4 0.01 2.2E-07 36.1 11.5 99 32-133 9-120 (126)
211 COG1225 Bcp Peroxiredoxin [Pos 97.4 0.0048 1E-07 39.4 9.3 88 44-131 29-155 (157)
212 COG1651 DsbG Protein-disulfide 97.3 0.0018 3.8E-08 44.3 7.7 38 90-132 206-243 (244)
213 PF01323 DSBA: DSBA-like thior 97.3 0.0087 1.9E-07 39.2 10.4 35 91-129 159-193 (193)
214 cd03069 PDI_b_ERp57 PDIb famil 97.2 0.0093 2E-07 35.4 9.1 94 29-131 3-103 (104)
215 KOG2640|consensus 97.2 0.00013 2.8E-09 50.9 0.8 87 45-133 76-163 (319)
216 cd02978 KaiB_like KaiB-like fa 96.9 0.0057 1.2E-07 33.8 5.8 59 48-106 3-62 (72)
217 cd02974 AhpF_NTD_N Alkyl hydro 96.9 0.03 6.5E-07 32.7 10.3 84 35-131 8-93 (94)
218 PRK15317 alkyl hydroperoxide r 96.9 0.02 4.4E-07 43.5 10.2 89 34-134 7-96 (517)
219 TIGR03140 AhpF alkyl hydropero 96.7 0.048 1E-06 41.5 11.4 90 35-135 8-98 (515)
220 cd03041 GST_N_2GST_N GST_N fam 96.4 0.062 1.3E-06 29.8 7.9 69 50-130 3-75 (77)
221 COG4545 Glutaredoxin-related p 96.3 0.016 3.5E-07 32.0 4.5 59 46-113 3-77 (85)
222 cd03068 PDI_b_ERp72 PDIb famil 96.2 0.12 2.6E-06 30.9 10.4 96 28-130 2-106 (107)
223 COG3019 Predicted metal-bindin 96.1 0.096 2.1E-06 32.7 8.0 73 48-131 27-103 (149)
224 PRK09301 circadian clock prote 96.1 0.033 7.2E-07 32.9 5.5 74 45-119 5-79 (103)
225 TIGR02654 circ_KaiB circadian 96.0 0.036 7.8E-07 31.8 5.3 73 46-119 3-76 (87)
226 COG0386 BtuE Glutathione perox 96.0 0.16 3.6E-06 32.3 8.6 89 44-133 24-161 (162)
227 cd02990 UAS_FAF1 UAS family, F 96.0 0.2 4.3E-06 31.3 12.5 92 42-133 18-134 (136)
228 cd03013 PRX5_like Peroxiredoxi 95.8 0.043 9.4E-07 35.0 5.8 41 45-85 29-73 (155)
229 COG1999 Uncharacterized protei 95.7 0.35 7.6E-06 32.5 10.5 91 44-134 66-206 (207)
230 KOG2507|consensus 95.7 0.28 6E-06 36.3 10.0 88 45-132 18-111 (506)
231 cd03040 GST_N_mPGES2 GST_N fam 95.7 0.16 3.4E-06 28.0 8.0 71 49-132 2-76 (77)
232 cd03036 ArsC_like Arsenate Red 95.6 0.0076 1.6E-07 36.3 1.5 34 50-89 2-35 (111)
233 cd03037 GST_N_GRX2 GST_N famil 95.5 0.077 1.7E-06 28.8 5.3 55 51-110 3-57 (71)
234 cd03060 GST_N_Omega_like GST_N 95.5 0.11 2.3E-06 28.3 5.9 58 50-112 2-60 (71)
235 COG2761 FrnE Predicted dithiol 95.4 0.067 1.5E-06 36.2 5.8 46 90-139 175-220 (225)
236 COG3531 Predicted protein-disu 95.4 0.043 9.2E-07 36.3 4.6 44 90-133 165-210 (212)
237 TIGR02742 TrbC_Ftype type-F co 95.2 0.11 2.3E-06 32.3 5.7 45 87-131 59-114 (130)
238 cd02977 ArsC_family Arsenate R 95.2 0.019 4.2E-07 34.0 2.4 33 50-88 2-34 (105)
239 PF07689 KaiB: KaiB domain; I 94.8 0.02 4.4E-07 32.5 1.7 53 52-104 3-56 (82)
240 PF06053 DUF929: Domain of unk 94.6 0.18 3.8E-06 34.8 6.1 58 42-106 55-112 (249)
241 PF13417 GST_N_3: Glutathione 94.4 0.43 9.3E-06 26.2 8.1 71 51-133 1-72 (75)
242 PRK01655 spxA transcriptional 94.3 0.078 1.7E-06 32.9 3.6 34 49-88 2-35 (131)
243 TIGR01617 arsC_related transcr 94.0 0.091 2E-06 31.8 3.5 34 50-89 2-35 (117)
244 PF06953 ArsD: Arsenical resis 93.9 0.59 1.3E-05 28.7 6.8 56 77-135 40-105 (123)
245 cd00570 GST_N_family Glutathio 93.7 0.25 5.3E-06 25.9 4.6 57 50-112 2-60 (71)
246 KOG2792|consensus 93.7 1.1 2.3E-05 31.2 8.3 91 45-135 139-278 (280)
247 PHA03075 glutaredoxin-like pro 93.6 0.14 3.1E-06 30.8 3.6 30 46-75 2-31 (123)
248 PF09673 TrbC_Ftype: Type-F co 93.6 0.95 2.1E-05 27.3 7.9 56 48-108 25-80 (113)
249 cd03059 GST_N_SspA GST_N famil 93.6 0.62 1.3E-05 25.1 8.0 69 50-130 2-71 (73)
250 cd03035 ArsC_Yffb Arsenate Red 93.5 0.1 2.2E-06 31.1 3.0 34 50-89 2-35 (105)
251 PRK12559 transcriptional regul 93.0 0.18 3.9E-06 31.3 3.6 33 49-87 2-34 (131)
252 cd03074 PDI_b'_Calsequestrin_C 92.9 1.2 2.6E-05 26.7 10.1 87 45-131 20-119 (120)
253 cd03051 GST_N_GTT2_like GST_N 92.9 0.3 6.5E-06 26.3 4.1 56 50-110 2-61 (74)
254 cd03032 ArsC_Spx Arsenate Redu 92.8 0.22 4.8E-06 30.0 3.8 34 49-88 2-35 (115)
255 PF09822 ABC_transp_aux: ABC-t 92.8 2.3 5.1E-05 29.6 11.6 59 41-99 20-88 (271)
256 COG3634 AhpF Alkyl hydroperoxi 92.5 1 2.2E-05 33.0 7.1 85 41-130 111-196 (520)
257 cd03024 DsbA_FrnE DsbA family, 92.0 0.2 4.4E-06 33.0 3.2 35 90-128 166-200 (201)
258 KOG1651|consensus 91.8 2.1 4.6E-05 27.7 7.3 90 44-133 33-170 (171)
259 PF04134 DUF393: Protein of un 91.6 0.34 7.3E-06 29.0 3.6 58 51-110 1-61 (114)
260 PF13778 DUF4174: Domain of un 91.6 2 4.3E-05 26.1 8.7 75 56-130 21-110 (118)
261 cd03025 DsbA_FrnE_like DsbA fa 91.4 0.49 1.1E-05 30.9 4.5 32 49-80 3-34 (193)
262 PRK13344 spxA transcriptional 91.3 0.4 8.6E-06 29.8 3.7 33 49-87 2-34 (132)
263 cd03045 GST_N_Delta_Epsilon GS 91.0 1.5 3.3E-05 23.6 5.6 51 50-104 2-56 (74)
264 PF02630 SCO1-SenC: SCO1/SenC; 89.8 1 2.3E-05 29.2 4.8 43 44-86 51-97 (174)
265 COG3011 Predicted thiol-disulf 89.2 2.9 6.3E-05 26.2 6.2 68 44-113 5-74 (137)
266 cd03022 DsbA_HCCA_Iso DsbA fam 88.9 0.74 1.6E-05 30.0 3.7 34 90-128 158-191 (192)
267 PRK00366 ispG 4-hydroxy-3-meth 88.3 1.6 3.5E-05 31.7 5.2 77 56-132 270-357 (360)
268 PF09695 YtfJ_HI0045: Bacteria 87.6 5.7 0.00012 25.6 8.9 88 44-131 36-157 (160)
269 PF06491 Disulph_isomer: Disul 87.0 5.4 0.00012 24.8 11.2 107 28-135 18-135 (136)
270 PRK13730 conjugal transfer pil 87.0 1.7 3.8E-05 29.1 4.4 42 88-130 151-192 (212)
271 KOG2244|consensus 86.6 1.1 2.3E-05 34.6 3.7 73 33-106 101-184 (786)
272 cd03055 GST_N_Omega GST_N fami 86.5 2.6 5.6E-05 24.0 4.6 53 49-105 19-72 (89)
273 COG0821 gcpE 1-hydroxy-2-methy 86.3 2.4 5.1E-05 30.7 5.0 81 56-136 263-355 (361)
274 PF04551 GcpE: GcpE protein; 85.8 1.7 3.8E-05 31.6 4.3 75 57-131 271-358 (359)
275 COG0450 AhpC Peroxiredoxin [Po 85.6 8.4 0.00018 25.7 9.3 88 45-132 33-161 (194)
276 PF06764 DUF1223: Protein of u 83.9 11 0.00023 25.4 10.4 79 49-134 2-100 (202)
277 PF07315 DUF1462: Protein of u 82.9 7 0.00015 22.6 8.1 74 52-129 3-93 (93)
278 cd03033 ArsC_15kD Arsenate Red 82.7 2.1 4.5E-05 25.8 3.2 33 49-87 2-34 (113)
279 PF04592 SelP_N: Selenoprotein 81.8 3.2 7E-05 28.4 4.0 43 43-85 24-70 (238)
280 cd03052 GST_N_GDAP1 GST_N fami 81.7 6.5 0.00014 21.4 6.0 57 50-112 2-62 (73)
281 cd03025 DsbA_FrnE_like DsbA fa 81.4 2 4.3E-05 28.0 3.0 21 90-110 160-180 (193)
282 cd03056 GST_N_4 GST_N family, 78.9 7.8 0.00017 20.5 5.7 56 50-111 2-61 (73)
283 PF00255 GSHPx: Glutathione pe 78.4 12 0.00026 22.4 5.5 43 44-87 20-63 (108)
284 TIGR00014 arsC arsenate reduct 77.4 3.4 7.3E-05 24.9 2.9 33 50-88 2-34 (114)
285 cd03034 ArsC_ArsC Arsenate Red 76.7 3.7 8E-05 24.6 2.9 33 50-88 2-34 (112)
286 cd03021 DsbA_GSTK DsbA family, 76.5 4.5 9.7E-05 27.0 3.6 38 91-128 171-208 (209)
287 KOG0912|consensus 75.3 16 0.00034 26.4 5.9 96 27-132 210-319 (375)
288 PF00352 TBP: Transcription fa 75.2 13 0.00028 21.1 5.3 61 66-133 20-80 (86)
289 COG5494 Predicted thioredoxin/ 75.1 17 0.00036 24.8 5.7 75 49-131 13-87 (265)
290 COG5429 Uncharacterized secret 74.5 13 0.00029 25.6 5.3 84 47-135 43-144 (261)
291 PF11287 DUF3088: Protein of u 74.5 5.6 0.00012 24.0 3.2 50 56-106 23-75 (112)
292 cd03022 DsbA_HCCA_Iso DsbA fam 71.7 9.9 0.00021 24.6 4.3 33 51-83 3-35 (192)
293 KOG1364|consensus 71.7 8.7 0.00019 28.0 4.1 57 78-134 133-191 (356)
294 COG1393 ArsC Arsenate reductas 69.9 7 0.00015 23.8 3.0 22 49-70 3-24 (117)
295 KOG0911|consensus 69.2 9.1 0.0002 26.1 3.6 52 55-112 152-205 (227)
296 PRK09481 sspA stringent starva 68.7 31 0.00068 22.9 6.6 61 45-111 7-68 (211)
297 TIGR00612 ispG_gcpE 1-hydroxy- 68.6 4.9 0.00011 29.2 2.4 62 56-117 261-334 (346)
298 KOG1422|consensus 66.1 39 0.00084 23.0 7.1 67 56-134 20-87 (221)
299 COG3411 Ferredoxin [Energy pro 65.8 19 0.00042 19.4 4.3 30 101-134 18-47 (64)
300 PF07511 DUF1525: Protein of u 65.5 20 0.00044 21.8 4.3 37 91-131 75-111 (114)
301 cd03061 GST_N_CLIC GST_N famil 64.5 25 0.00055 20.3 7.3 67 55-133 20-87 (91)
302 PF08806 Sep15_SelM: Sep15/Sel 64.2 17 0.00037 20.4 3.6 33 100-132 42-76 (78)
303 PF07700 HNOB: Heme NO binding 63.8 27 0.00058 22.6 5.0 42 45-86 127-169 (171)
304 KOG4277|consensus 63.8 54 0.0012 23.8 9.1 96 27-131 134-230 (468)
305 cd03054 GST_N_Metaxin GST_N fa 62.5 22 0.00048 18.9 6.3 58 55-130 14-71 (72)
306 PF03960 ArsC: ArsC family; I 62.3 15 0.00033 21.7 3.4 32 52-89 1-32 (110)
307 cd03053 GST_N_Phi GST_N family 61.8 23 0.0005 18.9 7.0 69 49-129 2-74 (76)
308 PRK10853 putative reductase; P 61.1 12 0.00026 22.7 2.8 33 49-87 2-34 (118)
309 TIGR01616 nitro_assoc nitrogen 60.7 16 0.00034 22.6 3.3 23 48-70 2-24 (126)
310 KOG3029|consensus 60.6 46 0.00099 23.9 5.8 73 47-132 89-161 (370)
311 cd03024 DsbA_FrnE DsbA family, 60.4 19 0.00042 23.5 4.0 25 51-75 3-27 (201)
312 COG2761 FrnE Predicted dithiol 60.3 22 0.00047 24.4 4.1 32 46-77 5-36 (225)
313 KOG3360|consensus 57.9 28 0.0006 20.4 3.7 46 90-138 29-76 (98)
314 PF09936 Methyltrn_RNA_4: SAM- 57.6 15 0.00032 24.3 2.9 26 31-56 118-143 (185)
315 TIGR03757 conj_TIGR03757 integ 56.6 33 0.00071 20.8 4.0 35 91-129 76-110 (113)
316 PRK10387 glutaredoxin 2; Provi 56.6 54 0.0012 21.5 6.5 69 51-130 3-71 (210)
317 PRK10026 arsenate reductase; P 56.4 19 0.00041 22.7 3.2 22 49-70 4-25 (141)
318 PRK00394 transcription factor; 56.4 54 0.0012 21.6 5.4 31 101-133 47-77 (179)
319 KOG2868|consensus 55.9 27 0.00059 25.3 4.1 64 61-129 21-87 (335)
320 cd03058 GST_N_Tau GST_N family 55.9 30 0.00066 18.4 6.5 68 51-130 3-72 (74)
321 cd03049 GST_N_3 GST_N family, 55.8 30 0.00065 18.3 4.1 58 51-111 3-61 (73)
322 PF11317 DUF3119: Protein of u 55.4 30 0.00066 21.1 3.8 35 98-132 81-115 (116)
323 COG4604 CeuD ABC-type enteroch 55.1 59 0.0013 22.3 5.4 50 57-114 168-217 (252)
324 COG2101 SPT15 TATA-box binding 54.7 45 0.00098 22.0 4.7 32 101-134 54-85 (185)
325 TIGR02743 TraW type-F conjugat 54.5 41 0.00089 22.7 4.7 26 86-112 172-197 (202)
326 KOG1731|consensus 54.0 19 0.00042 28.2 3.4 61 78-139 216-276 (606)
327 cd03030 GRX_SH3BGR Glutaredoxi 53.6 42 0.00092 19.4 7.3 44 66-113 21-72 (92)
328 COG4752 Uncharacterized protei 52.1 23 0.00049 22.7 3.0 28 31-58 119-146 (190)
329 PLN00062 TATA-box-binding prot 51.5 68 0.0015 21.2 5.4 60 67-133 19-78 (179)
330 PF03227 GILT: Gamma interfero 51.2 50 0.0011 19.6 4.3 21 49-69 3-24 (108)
331 TIGR02182 GRXB Glutaredoxin, G 50.7 72 0.0016 21.2 6.4 54 52-110 3-56 (209)
332 PF05673 DUF815: Protein of un 49.2 56 0.0012 22.9 4.8 79 48-132 54-135 (249)
333 cd03021 DsbA_GSTK DsbA family, 48.3 61 0.0013 21.5 4.9 36 48-83 2-37 (209)
334 KOG0868|consensus 48.1 8.1 0.00017 25.6 0.6 65 45-112 4-68 (217)
335 KOG4079|consensus 48.1 34 0.00073 21.5 3.2 29 106-134 81-109 (169)
336 PF01216 Calsequestrin: Calseq 47.6 1.1E+02 0.0025 22.6 10.3 100 27-133 147-248 (383)
337 PF05176 ATP-synt_10: ATP10 pr 45.8 1E+02 0.0022 21.6 7.5 40 90-129 205-247 (252)
338 cd03071 PDI_b'_NRX PDIb' famil 44.3 71 0.0015 19.3 7.5 89 44-132 13-115 (116)
339 COG3531 Predicted protein-disu 42.7 45 0.00098 22.5 3.4 28 48-75 3-30 (212)
340 cd04518 TBP_archaea archaeal T 41.4 94 0.002 20.4 4.7 30 102-133 140-169 (174)
341 PRK13738 conjugal transfer pil 40.9 88 0.0019 21.3 4.6 27 86-112 170-197 (209)
342 PF14424 Toxin-deaminase: The 40.7 90 0.002 19.5 5.1 28 50-81 99-128 (133)
343 TIGR02174 CXXU_selWTH selT/sel 40.5 26 0.00055 19.2 1.8 27 102-128 42-71 (72)
344 PF10262 Rdx: Rdx family; Int 39.2 68 0.0015 17.6 7.3 68 51-130 5-75 (76)
345 cd00652 TBP_TLF TATA box bindi 39.0 1.1E+02 0.0023 20.1 4.7 60 67-133 19-78 (174)
346 cd04517 TLF TBP-like factors ( 38.6 1.1E+02 0.0025 20.0 4.8 31 101-133 48-78 (174)
347 PF10865 DUF2703: Domain of un 38.2 96 0.0021 19.0 4.8 53 55-112 13-72 (120)
348 cd03062 TRX_Fd_Sucrase TRX-lik 37.6 84 0.0018 18.2 4.3 35 96-134 48-85 (97)
349 COG0278 Glutaredoxin-related p 37.4 92 0.002 18.6 7.1 54 55-113 28-83 (105)
350 cd04516 TBP_eukaryotes eukaryo 37.4 1.2E+02 0.0026 19.9 4.8 60 67-133 19-78 (174)
351 TIGR03759 conj_TIGR03759 integ 36.2 88 0.0019 21.1 4.0 38 45-86 108-145 (200)
352 KOG0852|consensus 35.0 1.4E+02 0.003 19.9 8.0 47 86-132 104-161 (196)
353 TIGR02652 conserved hypothetic 34.9 15 0.00033 23.1 0.3 13 56-68 11-23 (163)
354 PF09654 DUF2396: Protein of u 34.9 15 0.00032 23.1 0.3 13 56-68 8-20 (161)
355 PF13409 GST_N_2: Glutathione 31.6 87 0.0019 16.6 6.5 66 56-130 1-69 (70)
356 PF04908 SH3BGR: SH3-binding, 29.6 1.3E+02 0.0027 17.8 5.4 40 51-90 4-44 (99)
357 PF02591 DUF164: Putative zinc 28.8 72 0.0016 16.3 2.2 31 35-65 3-33 (56)
358 PF05988 DUF899: Bacterial pro 28.7 1.9E+02 0.0042 19.7 9.4 51 36-86 59-115 (211)
359 PF06528 Phage_P2_GpE: Phage P 28.7 79 0.0017 15.2 2.7 22 118-139 17-38 (39)
360 TIGR01753 flav_short flavodoxi 28.6 1.4E+02 0.003 18.0 4.4 32 51-82 3-34 (140)
361 cd03038 GST_N_etherase_LigE GS 28.5 1.1E+02 0.0024 16.7 5.0 66 54-130 13-81 (84)
362 PF02484 Rhabdo_NV: Rhabdoviru 28.2 1.1E+02 0.0024 17.7 3.1 38 95-132 19-56 (111)
363 TIGR03107 glu_aminopep glutamy 27.9 2.5E+02 0.0054 20.7 7.3 81 48-129 252-332 (350)
364 cd03044 GST_N_EF1Bgamma GST_N 27.6 1.1E+02 0.0023 16.3 4.3 56 51-111 3-61 (75)
365 PHA02131 hypothetical protein 27.6 1E+02 0.0022 16.1 3.3 19 98-116 27-45 (70)
366 PF14421 LmjF365940-deam: A di 27.4 94 0.002 20.7 3.0 27 56-86 156-182 (193)
367 cd03039 GST_N_Sigma_like GST_N 27.1 1E+02 0.0023 16.1 3.2 55 51-111 3-59 (72)
368 KOG4578|consensus 26.0 1.8E+02 0.0039 21.5 4.4 71 39-112 58-129 (421)
369 COG4175 ProV ABC-type proline/ 25.5 1.4E+02 0.003 22.2 3.8 46 61-114 201-246 (386)
370 PRK09864 putative peptidase; P 25.3 2.9E+02 0.0062 20.5 7.1 82 45-128 249-331 (356)
371 PF14437 MafB19-deam: MafB19-l 25.1 1.9E+02 0.0042 18.5 4.4 36 45-83 99-135 (146)
372 TIGR00595 priA primosomal prot 25.1 3.3E+02 0.0072 21.2 7.3 21 66-87 274-294 (505)
373 COG1198 PriA Primosomal protei 25.0 3.1E+02 0.0068 22.7 6.0 22 67-89 497-518 (730)
374 COG3422 Uncharacterized conser 24.9 1.2E+02 0.0026 16.0 3.5 32 107-138 22-53 (59)
375 PF02645 DegV: Uncharacterised 24.0 1.6E+02 0.0034 20.7 3.9 42 87-131 12-54 (280)
376 cd06537 CIDE_N_B CIDE_N domain 24.0 1E+02 0.0022 17.5 2.4 24 91-114 30-53 (81)
377 cd00307 RuBisCO_small_like Rib 23.8 1.1E+02 0.0024 17.4 2.6 30 57-86 36-71 (84)
378 cd06538 CIDE_N_FSP27 CIDE_N do 23.0 1.2E+02 0.0026 17.2 2.5 23 91-113 30-52 (79)
379 TIGR00762 DegV EDD domain prot 22.9 1.7E+02 0.0036 20.6 3.8 42 87-130 11-52 (275)
380 PF14097 SpoVAE: Stage V sporu 22.8 1.1E+02 0.0024 20.2 2.6 41 32-72 38-79 (180)
381 PF14237 DUF4339: Domain of un 22.8 1.1E+02 0.0024 14.7 2.2 17 114-130 9-25 (45)
382 PF15379 DUF4606: Domain of un 22.5 84 0.0018 18.7 1.9 18 53-70 30-47 (104)
383 COG5270 PUA domain (predicted 22.5 26 0.00057 23.2 -0.2 36 46-83 6-41 (202)
384 PF14307 Glyco_tran_WbsX: Glyc 22.4 2E+02 0.0043 21.0 4.3 41 44-84 157-198 (345)
385 KOG0855|consensus 22.4 2.4E+02 0.0053 18.7 7.5 28 45-72 90-122 (211)
386 PRK08351 DNA-directed RNA poly 21.7 62 0.0013 17.3 1.2 38 53-98 14-51 (61)
387 KOG0095|consensus 21.4 2.4E+02 0.0053 18.3 3.9 44 33-76 65-110 (213)
388 PF11453 DUF2950: Protein of u 21.3 1.1E+02 0.0025 21.6 2.6 38 91-129 223-260 (271)
389 PF00708 Acylphosphatase: Acyl 21.1 1.7E+02 0.0038 16.5 4.8 42 90-135 25-66 (91)
390 cd03050 GST_N_Theta GST_N fami 21.1 1.5E+02 0.0032 15.7 6.6 55 51-111 3-61 (76)
391 TIGR01764 excise DNA binding d 20.7 15 0.00033 17.6 -1.3 11 120-130 39-49 (49)
392 PF10589 NADH_4Fe-4S: NADH-ubi 20.6 66 0.0014 15.9 1.1 20 56-75 18-37 (46)
393 COG1671 Uncharacterized protei 20.4 2.5E+02 0.0054 18.1 3.8 27 50-80 4-30 (150)
394 cd05855 Ig_TrkB_d5 Fifth domai 20.2 81 0.0017 17.5 1.5 19 95-113 5-25 (79)
No 1
>KOG0910|consensus
Probab=99.97 E-value=1.2e-29 Score=156.47 Aligned_cols=108 Identities=46% Similarity=0.835 Sum_probs=104.0
Q ss_pred eeeeEEeChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEE
Q psy11159 26 YTSFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIA 105 (141)
Q Consensus 26 ~~~~~~~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 105 (141)
...+.+.+.++|++.+.+++.|++|.|||+||++|+.+.|.++++..++.+.+.++++|.|++.+++.+|+|..+||+++
T Consensus 42 ~~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlv 121 (150)
T KOG0910|consen 42 ATLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLV 121 (150)
T ss_pred cccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEE
Confidence 45778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCeEEEEEecCCCHHHHHHHHHHHHh
Q psy11159 106 MKNGKELDRLIGLQDIDKLKSFIDNLVE 133 (141)
Q Consensus 106 ~~~g~~~~~~~g~~~~~~l~~~i~~~~~ 133 (141)
|+||+++.+..|..+.+.+.++|+++++
T Consensus 122 fknGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 122 FKNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999875
No 2
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.95 E-value=6.3e-26 Score=135.40 Aligned_cols=102 Identities=41% Similarity=0.730 Sum_probs=96.8
Q ss_pred EEeChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCC
Q psy11159 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNG 109 (141)
Q Consensus 30 ~~~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 109 (141)
...+.++|.+.+.+++++++|+||++||++|+.+.|.+.++++.+++++.|+.+|+++++.++++|+|.++||++++++|
T Consensus 2 ~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g 81 (103)
T PF00085_consen 2 IVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNG 81 (103)
T ss_dssp EEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETT
T ss_pred EECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEECC
Confidence 45688999999887789999999999999999999999999999998899999999999999999999999999999999
Q ss_pred eEEEEEecCCCHHHHHHHHHHH
Q psy11159 110 KELDRLIGLQDIDKLKSFIDNL 131 (141)
Q Consensus 110 ~~~~~~~g~~~~~~l~~~i~~~ 131 (141)
+...++.|..+.+.|.+||+++
T Consensus 82 ~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 82 KEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EEEEEEESSSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCHHHHHHHHHcC
Confidence 9999999999999999999874
No 3
>PHA02278 thioredoxin-like protein
Probab=99.94 E-value=7.7e-26 Score=134.62 Aligned_cols=95 Identities=17% Similarity=0.293 Sum_probs=84.9
Q ss_pred eChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCc----hhHHhhCCcccccEEEEEe
Q psy11159 32 QDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDEL----TDLAMDYEVSAVPVLIAMK 107 (141)
Q Consensus 32 ~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~----~~~~~~~~v~~~Pt~~~~~ 107 (141)
++.++|.+.+ ..+++++|+|||+||++|+.+.|.++++++++...+.|+.+|+|.+ ++++++|+|.++||+++|+
T Consensus 2 ~~~~~~~~~i-~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk 80 (103)
T PHA02278 2 NSLVDLNTAI-RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYK 80 (103)
T ss_pred CCHHHHHHHH-hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEE
Confidence 4678888877 5689999999999999999999999999988655678999999986 6899999999999999999
Q ss_pred CCeEEEEEecCCCHHHHHHH
Q psy11159 108 NGKELDRLIGLQDIDKLKSF 127 (141)
Q Consensus 108 ~g~~~~~~~g~~~~~~l~~~ 127 (141)
+|+.+.+..|..+.+.+.++
T Consensus 81 ~G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 81 DGQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred CCEEEEEEeCCCCHHHHHhh
Confidence 99999999998888887765
No 4
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.94 E-value=3.3e-26 Score=137.32 Aligned_cols=98 Identities=19% Similarity=0.355 Sum_probs=85.3
Q ss_pred hhhHHHHHhc-CCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeEE
Q psy11159 34 MNDFEKKVKN-ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKEL 112 (141)
Q Consensus 34 ~~~~~~~i~~-~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 112 (141)
.+++++.+.. +++++||.|||+||++|+.+.|.++++++++++.+.|+++|+|+++++.++|+|.++||+++|++|+.+
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v 81 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHM 81 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEE
Confidence 4677887764 588999999999999999999999999999997789999999999999999999999999999999999
Q ss_pred EEEecCC----------CHHHHHHHHHHH
Q psy11159 113 DRLIGLQ----------DIDKLKSFIDNL 131 (141)
Q Consensus 113 ~~~~g~~----------~~~~l~~~i~~~ 131 (141)
.+..|.. +.+++.+.++.+
T Consensus 82 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02954 82 KIDLGTGNNNKINWVFEDKQEFIDIIETI 110 (114)
T ss_pred EEEcCCCCCceEEEecCcHHHHHHHHHHH
Confidence 9988863 345555555543
No 5
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.94 E-value=1.6e-25 Score=136.21 Aligned_cols=103 Identities=11% Similarity=0.136 Sum_probs=94.9
Q ss_pred eEEeChhhHHHHHhcCCCcEEEEEecCCChh--hh--hhhHHHHHHHHHh--cCCEEEEEEeCCCchhHHhhCCcccccE
Q psy11159 29 FKVQDMNDFEKKVKNASTPVIVDFFATWCNP--CK--TLTPRLEAVIDEM--KGKVVLAKVDIDELTDLAMDYEVSAVPV 102 (141)
Q Consensus 29 ~~~~~~~~~~~~i~~~~~~~lv~f~~~~C~~--C~--~~~~~l~~~~~~~--~~~~~~~~vd~~~~~~~~~~~~v~~~Pt 102 (141)
+...+.++|++.+.+++.++|+.||++||++ |+ .+.|.+.+++.++ .+++.|+++|++++++++++|+|.++||
T Consensus 11 v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~iPT 90 (120)
T cd03065 11 VIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEEDS 90 (120)
T ss_pred eeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCccccE
Confidence 3344789999999999999999999999977 99 8899999999998 7789999999999999999999999999
Q ss_pred EEEEeCCeEEEEEecCCCHHHHHHHHHHHH
Q psy11159 103 LIAMKNGKELDRLIGLQDIDKLKSFIDNLV 132 (141)
Q Consensus 103 ~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 132 (141)
+++|++|+.+. +.|..+.+.+.+||++++
T Consensus 91 l~lfk~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 91 IYVFKDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred EEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 99999999887 999999999999999875
No 6
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.94 E-value=2.3e-25 Score=134.58 Aligned_cols=100 Identities=10% Similarity=0.160 Sum_probs=89.0
Q ss_pred eeeEEeChhhHHHH--HhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHH-hhCCcccccEE
Q psy11159 27 TSFKVQDMNDFEKK--VKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLA-MDYEVSAVPVL 103 (141)
Q Consensus 27 ~~~~~~~~~~~~~~--i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~-~~~~v~~~Pt~ 103 (141)
.+++ .+.++|... +.+.+++++|.|||+||++|+.+.|.++++++.+++.+.|++||++++.+++ ++|+|.++||+
T Consensus 10 ~v~~-l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl 88 (113)
T cd03006 10 PVLD-FYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVI 88 (113)
T ss_pred CeEE-echhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEE
Confidence 3444 477777775 3467899999999999999999999999999999878999999999999998 58999999999
Q ss_pred EEEeCCeEEEEEecCCCHHHHHHH
Q psy11159 104 IAMKNGKELDRLIGLQDIDKLKSF 127 (141)
Q Consensus 104 ~~~~~g~~~~~~~g~~~~~~l~~~ 127 (141)
++|++|+...++.|..+.+.|..|
T Consensus 89 ~lf~~g~~~~~y~G~~~~~~i~~~ 112 (113)
T cd03006 89 HLYYRSRGPIEYKGPMRAPYMEKF 112 (113)
T ss_pred EEEECCccceEEeCCCCHHHHHhh
Confidence 999999988999999999998876
No 7
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.94 E-value=1.4e-25 Score=134.45 Aligned_cols=98 Identities=30% Similarity=0.572 Sum_probs=90.4
Q ss_pred EeChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCC-
Q psy11159 31 VQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNG- 109 (141)
Q Consensus 31 ~~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g- 109 (141)
..+.++|++.+.+++++++|.||++||++|+.+.|.++++++++.+.+.|+.+|++++++++++++|.++||+++|++|
T Consensus 5 ~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 84 (104)
T cd03004 5 TLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYPGNA 84 (104)
T ss_pred EcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEcCCC
Confidence 3478899998888888999999999999999999999999999987899999999999999999999999999999887
Q ss_pred eEEEEEecCCC-HHHHHHHH
Q psy11159 110 KELDRLIGLQD-IDKLKSFI 128 (141)
Q Consensus 110 ~~~~~~~g~~~-~~~l~~~i 128 (141)
+.+.++.|..+ .++|.+||
T Consensus 85 ~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 85 SKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred CCceEccCCCCCHHHHHhhC
Confidence 88899999887 88888775
No 8
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.93 E-value=5.3e-25 Score=130.05 Aligned_cols=94 Identities=33% Similarity=0.628 Sum_probs=87.0
Q ss_pred hHHHHHhcC-CCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeEEEE
Q psy11159 36 DFEKKVKNA-STPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDR 114 (141)
Q Consensus 36 ~~~~~i~~~-~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 114 (141)
+|++.+.++ +++++|+||++||++|+.+.|.+.++++.+++.+.++.+|++++++++++|+|.++||++++++|+.+.+
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~ 81 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVDG 81 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEeee
Confidence 567777655 7899999999999999999999999999998789999999999999999999999999999999999999
Q ss_pred EecCCCHHHHHHHHH
Q psy11159 115 LIGLQDIDKLKSFID 129 (141)
Q Consensus 115 ~~g~~~~~~l~~~i~ 129 (141)
+.|..+.+++..||+
T Consensus 82 ~~g~~~~~~l~~~l~ 96 (96)
T cd02956 82 FQGAQPEEQLRQMLD 96 (96)
T ss_pred ecCCCCHHHHHHHhC
Confidence 999999999998874
No 9
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.93 E-value=4.7e-25 Score=131.49 Aligned_cols=96 Identities=24% Similarity=0.451 Sum_probs=88.4
Q ss_pred EeChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCe
Q psy11159 31 VQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGK 110 (141)
Q Consensus 31 ~~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 110 (141)
..+.++|++.+ ..+++++|.||++||++|+.+.|.+.++++++++.+.|+.+|+++++.++++++|.++||+++|++|+
T Consensus 5 ~l~~~~f~~~v-~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 83 (101)
T cd03003 5 TLDRGDFDAAV-NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPSGM 83 (101)
T ss_pred EcCHhhHHHHh-cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcCCC
Confidence 34788999987 45689999999999999999999999999999988999999999999999999999999999999999
Q ss_pred EEEEEecCCCHHHHHHH
Q psy11159 111 ELDRLIGLQDIDKLKSF 127 (141)
Q Consensus 111 ~~~~~~g~~~~~~l~~~ 127 (141)
.+.++.|..+.+.|.+|
T Consensus 84 ~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 84 NPEKYYGDRSKESLVKF 100 (101)
T ss_pred CcccCCCCCCHHHHHhh
Confidence 89999999999988776
No 10
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.93 E-value=1.1e-24 Score=130.29 Aligned_cols=96 Identities=20% Similarity=0.332 Sum_probs=85.8
Q ss_pred ChhhHHHHHhcC-CCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCch---hHHhhCCcccccEEEEEeC
Q psy11159 33 DMNDFEKKVKNA-STPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT---DLAMDYEVSAVPVLIAMKN 108 (141)
Q Consensus 33 ~~~~~~~~i~~~-~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~Pt~~~~~~ 108 (141)
+.+++.+.+.+. +++++|.|||+||++|+.+.|.+.++++++ +++.|+.+|.++++ +++++|+|.++||+++|++
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~ 80 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKD 80 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeC
Confidence 567888888765 899999999999999999999999999999 47999999999875 7999999999999999999
Q ss_pred CeEEEEEecCCCHHHHHHHHHH
Q psy11159 109 GKELDRLIGLQDIDKLKSFIDN 130 (141)
Q Consensus 109 g~~~~~~~g~~~~~~l~~~i~~ 130 (141)
|+.+.++.|. ..+++.+.+..
T Consensus 81 G~~v~~~~G~-~~~~l~~~~~~ 101 (103)
T cd02985 81 GEKIHEEEGI-GPDELIGDVLY 101 (103)
T ss_pred CeEEEEEeCC-CHHHHHHHHHh
Confidence 9999999997 67777776654
No 11
>PRK09381 trxA thioredoxin; Provisional
Probab=99.93 E-value=1.5e-24 Score=130.92 Aligned_cols=105 Identities=32% Similarity=0.674 Sum_probs=95.9
Q ss_pred eeEEeChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEe
Q psy11159 28 SFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMK 107 (141)
Q Consensus 28 ~~~~~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 107 (141)
++++ +.++|.+.+.+.+++++|+||++||++|+.+.|.++++++.+++++.++.+|++.++.++++|++.++||+++|+
T Consensus 5 v~~~-~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 83 (109)
T PRK09381 5 IIHL-TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 83 (109)
T ss_pred ceee-ChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEEe
Confidence 3444 668898877777899999999999999999999999999999888999999999999999999999999999999
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHHh
Q psy11159 108 NGKELDRLIGLQDIDKLKSFIDNLVE 133 (141)
Q Consensus 108 ~g~~~~~~~g~~~~~~l~~~i~~~~~ 133 (141)
+|+.+.+..|..+.+++..+|+..++
T Consensus 84 ~G~~~~~~~G~~~~~~l~~~i~~~~~ 109 (109)
T PRK09381 84 NGEVAATKVGALSKGQLKEFLDANLA 109 (109)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999988763
No 12
>KOG0907|consensus
Probab=99.93 E-value=1.6e-24 Score=129.14 Aligned_cols=97 Identities=34% Similarity=0.722 Sum_probs=84.8
Q ss_pred ChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeEE
Q psy11159 33 DMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKEL 112 (141)
Q Consensus 33 ~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 112 (141)
+.+.........+++++++|||+||++|+.+.|.+.+++.+|++ +.|+++|+|+..++++.++|...||++++++|+.+
T Consensus 9 ~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~ 87 (106)
T KOG0907|consen 9 DLDLVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEV 87 (106)
T ss_pred hHHHHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEE
Confidence 33344444444579999999999999999999999999999996 99999999999999999999999999999999999
Q ss_pred EEEecCCCHHHHHHHHHHH
Q psy11159 113 DRLIGLQDIDKLKSFIDNL 131 (141)
Q Consensus 113 ~~~~g~~~~~~l~~~i~~~ 131 (141)
.+..|. +.+++++.|+++
T Consensus 88 ~~~vGa-~~~~l~~~i~~~ 105 (106)
T KOG0907|consen 88 DEVVGA-NKAELEKKIAKH 105 (106)
T ss_pred EEEecC-CHHHHHHHHHhc
Confidence 999999 666777777653
No 13
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.93 E-value=2.3e-24 Score=133.92 Aligned_cols=107 Identities=19% Similarity=0.312 Sum_probs=95.0
Q ss_pred eeEEeChhhHHHHHhcC-CCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEE-E
Q psy11159 28 SFKVQDMNDFEKKVKNA-STPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLI-A 105 (141)
Q Consensus 28 ~~~~~~~~~~~~~i~~~-~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~-~ 105 (141)
..++.+.+++++.+.+. ++++||.|||+||++|+.+.|.++++++++++.+.|+.+|+|+++++++.|+|.+.|+++ +
T Consensus 5 l~~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~f 84 (142)
T PLN00410 5 LPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFF 84 (142)
T ss_pred HhhhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEE
Confidence 34567899999998744 889999999999999999999999999999977999999999999999999999876555 8
Q ss_pred EeCCe-EEEEEec--------CCCHHHHHHHHHHHHhc
Q psy11159 106 MKNGK-ELDRLIG--------LQDIDKLKSFIDNLVEK 134 (141)
Q Consensus 106 ~~~g~-~~~~~~g--------~~~~~~l~~~i~~~~~~ 134 (141)
|++|+ .+.+..| ..+.++|.+.++...+.
T Consensus 85 fk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~ 122 (142)
T PLN00410 85 FRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRG 122 (142)
T ss_pred EECCeEEEEEecccccccccccCCHHHHHHHHHHHHHH
Confidence 89998 8889999 57888999999888764
No 14
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.92 E-value=1.5e-24 Score=131.28 Aligned_cols=98 Identities=19% Similarity=0.386 Sum_probs=89.2
Q ss_pred ChhhHHHHHhc--CCCcEEEEEecCCChhhhhhhHHHHHHHHHhcC-CEEEEEEeCCCchhHHhhCCcccccEEEEEeCC
Q psy11159 33 DMNDFEKKVKN--ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG-KVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNG 109 (141)
Q Consensus 33 ~~~~~~~~i~~--~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 109 (141)
+.+++.+.+.. .+++++|.||++||++|+.+.|.+.++++++++ ++.++.+|+++++.++++++|.++||+++|++|
T Consensus 10 ~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g 89 (111)
T cd02963 10 TFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIING 89 (111)
T ss_pred eHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECC
Confidence 66778765543 589999999999999999999999999999975 599999999999999999999999999999999
Q ss_pred eEEEEEecCCCHHHHHHHHHH
Q psy11159 110 KELDRLIGLQDIDKLKSFIDN 130 (141)
Q Consensus 110 ~~~~~~~g~~~~~~l~~~i~~ 130 (141)
+.+.+..|..+.+.+.++|++
T Consensus 90 ~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 90 QVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred EEEEEecCCCCHHHHHHHHhc
Confidence 999999999999999999876
No 15
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.92 E-value=4.1e-24 Score=127.57 Aligned_cols=98 Identities=20% Similarity=0.464 Sum_probs=88.6
Q ss_pred EEeChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcC-CEEEEEEeCCCchhHHhhCCcccccEEEEEeC
Q psy11159 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG-KVVLAKVDIDELTDLAMDYEVSAVPVLIAMKN 108 (141)
Q Consensus 30 ~~~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 108 (141)
.+.+.+++.+.+ +++++++|+|||+||++|+.+.|.+.++++++++ .+.|+.+|.| +++++++|+|.++||+++|++
T Consensus 3 ~i~~~~~~~~~i-~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~ 80 (102)
T cd02948 3 EINNQEEWEELL-SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKN 80 (102)
T ss_pred EccCHHHHHHHH-ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEEC
Confidence 467889999976 5688999999999999999999999999999874 4789999999 778999999999999999999
Q ss_pred CeEEEEEecCCCHHHHHHHHHH
Q psy11159 109 GKELDRLIGLQDIDKLKSFIDN 130 (141)
Q Consensus 109 g~~~~~~~g~~~~~~l~~~i~~ 130 (141)
|+.+.+..|. +.+.+.++|++
T Consensus 81 g~~~~~~~G~-~~~~~~~~i~~ 101 (102)
T cd02948 81 GELVAVIRGA-NAPLLNKTITE 101 (102)
T ss_pred CEEEEEEecC-ChHHHHHHHhh
Confidence 9999999996 88899988875
No 16
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2e-24 Score=146.41 Aligned_cols=106 Identities=39% Similarity=0.720 Sum_probs=98.2
Q ss_pred eEEeChhhHHHHHhcC--CCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEE
Q psy11159 29 FKVQDMNDFEKKVKNA--STPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAM 106 (141)
Q Consensus 29 ~~~~~~~~~~~~i~~~--~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 106 (141)
+...|..+|++.+..+ .+|++|+||+|||++|+.+.|.+++++..+++++.+++||+|+++.++.+|||.++||++.|
T Consensus 25 I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~af 104 (304)
T COG3118 25 IKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAF 104 (304)
T ss_pred ceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEEe
Confidence 5555888898877543 56999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEecCCCHHHHHHHHHHHHhc
Q psy11159 107 KNGKELDRLIGLQDIDKLKSFIDNLVEK 134 (141)
Q Consensus 107 ~~g~~~~~~~g~~~~~~l~~~i~~~~~~ 134 (141)
++|+.+..+.|..+.+.+++||++++..
T Consensus 105 ~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 105 KDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred eCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 9999999999999999999999998754
No 17
>PRK10996 thioredoxin 2; Provisional
Probab=99.92 E-value=2.8e-23 Score=130.28 Aligned_cols=100 Identities=28% Similarity=0.646 Sum_probs=93.0
Q ss_pred eChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeE
Q psy11159 32 QDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKE 111 (141)
Q Consensus 32 ~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 111 (141)
.+.+++++.+ +.+++++|+||++||++|+.+.|.+.++++++.+++.++.+|++++++++++|+|.++||+++|++|+.
T Consensus 40 ~~~~~~~~~i-~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~~ 118 (139)
T PRK10996 40 ATGETLDKLL-QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQV 118 (139)
T ss_pred cCHHHHHHHH-hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCEE
Confidence 4788899865 458999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred EEEEecCCCHHHHHHHHHHHH
Q psy11159 112 LDRLIGLQDIDKLKSFIDNLV 132 (141)
Q Consensus 112 ~~~~~g~~~~~~l~~~i~~~~ 132 (141)
+.++.|..+.+.+.+||++++
T Consensus 119 v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 119 VDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred EEEEcCCCCHHHHHHHHHHhC
Confidence 999999999999999998763
No 18
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.91 E-value=6.2e-24 Score=126.25 Aligned_cols=90 Identities=19% Similarity=0.342 Sum_probs=80.5
Q ss_pred HHHHHh-cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCC-CchhHHhhCCcccccEEEEEeCCeEEEE
Q psy11159 37 FEKKVK-NASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDID-ELTDLAMDYEVSAVPVLIAMKNGKELDR 114 (141)
Q Consensus 37 ~~~~i~-~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~-~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 114 (141)
+.+++. ..+++++|.|||+||++|+.+.|.++++++.++ ++.++.+|.+ ++++++++|+|.++||+++|++| .+.+
T Consensus 9 ~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~-~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~ 86 (100)
T cd02999 9 ALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFP-QIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVR 86 (100)
T ss_pred HHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc-cCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeE
Confidence 344343 458999999999999999999999999999997 5889999999 88999999999999999999998 7889
Q ss_pred EecCCCHHHHHHHH
Q psy11159 115 LIGLQDIDKLKSFI 128 (141)
Q Consensus 115 ~~g~~~~~~l~~~i 128 (141)
+.|..+.+.+.+||
T Consensus 87 ~~G~~~~~~l~~f~ 100 (100)
T cd02999 87 YNGTRTLDSLAAFY 100 (100)
T ss_pred ecCCCCHHHHHhhC
Confidence 99999999998875
No 19
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.91 E-value=1.2e-23 Score=126.88 Aligned_cols=99 Identities=29% Similarity=0.544 Sum_probs=89.7
Q ss_pred EeChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCC--chhHHhhCCcccccEEEEEeC
Q psy11159 31 VQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDE--LTDLAMDYEVSAVPVLIAMKN 108 (141)
Q Consensus 31 ~~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~~ 108 (141)
..+.+++.+.+.+.+++++|.||++||++|+.+.|.+.++++.+.+.+.++.+|++. +++++++|+|.++||+++|++
T Consensus 4 ~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~ 83 (109)
T cd03002 4 ELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRP 83 (109)
T ss_pred EcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEEeC
Confidence 457889999888889999999999999999999999999999998789999999998 889999999999999999988
Q ss_pred Ce-----EEEEEecCCCHHHHHHHHH
Q psy11159 109 GK-----ELDRLIGLQDIDKLKSFID 129 (141)
Q Consensus 109 g~-----~~~~~~g~~~~~~l~~~i~ 129 (141)
|+ ....+.|..+.+++.+||.
T Consensus 84 ~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 84 PKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred CCcccccccccccCccCHHHHHHHhC
Confidence 85 4567889999999999873
No 20
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.91 E-value=1.2e-23 Score=126.79 Aligned_cols=97 Identities=29% Similarity=0.560 Sum_probs=85.6
Q ss_pred EeChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhc------CCEEEEEEeCCCchhHHhhCCcccccEEE
Q psy11159 31 VQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMK------GKVVLAKVDIDELTDLAMDYEVSAVPVLI 104 (141)
Q Consensus 31 ~~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~------~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 104 (141)
..+.++|++.+ +.+++++|.||++||++|+.+.|.+.++++.++ +.+.++.+|++++++++++|+|.++||++
T Consensus 5 ~l~~~~f~~~i-~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl~ 83 (108)
T cd02996 5 SLTSGNIDDIL-QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPTLK 83 (108)
T ss_pred EcCHhhHHHHH-hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCEEE
Confidence 44788999876 567899999999999999999999999988753 24899999999999999999999999999
Q ss_pred EEeCCeE-EEEEecCCCHHHHHHHH
Q psy11159 105 AMKNGKE-LDRLIGLQDIDKLKSFI 128 (141)
Q Consensus 105 ~~~~g~~-~~~~~g~~~~~~l~~~i 128 (141)
+|++|+. ...+.|..+.++|.+||
T Consensus 84 ~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 84 LFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEeCCcCcceecCCCCCHHHHHhhC
Confidence 9999984 47888999999998875
No 21
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.91 E-value=2.8e-23 Score=138.73 Aligned_cols=109 Identities=26% Similarity=0.508 Sum_probs=97.9
Q ss_pred eeEEeChhhHHHHHhcC----CCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEE
Q psy11159 28 SFKVQDMNDFEKKVKNA----STPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVL 103 (141)
Q Consensus 28 ~~~~~~~~~~~~~i~~~----~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 103 (141)
.+...+.++|++.+..+ +++++|+||++||++|+.+.|.++++++++++.+.++.+|++++++++++|+|.++||+
T Consensus 31 ~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PTl 110 (224)
T PTZ00443 31 ALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPTL 110 (224)
T ss_pred CcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCEE
Confidence 34455888999987543 58999999999999999999999999999998899999999999999999999999999
Q ss_pred EEEeCCeEEEEEecCCCHHHHHHHHHHHHhccc
Q psy11159 104 IAMKNGKELDRLIGLQDIDKLKSFIDNLVEKQS 136 (141)
Q Consensus 104 ~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~ 136 (141)
++|++|+.+....|..+.+++.+|+.+...+..
T Consensus 111 ~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~~~~ 143 (224)
T PTZ00443 111 LLFDKGKMYQYEGGDRSTEKLAAFALGDFKKAL 143 (224)
T ss_pred EEEECCEEEEeeCCCCCHHHHHHHHHHHHHhhc
Confidence 999999988888898899999999999886543
No 22
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.91 E-value=4.7e-23 Score=122.45 Aligned_cols=99 Identities=38% Similarity=0.789 Sum_probs=91.8
Q ss_pred ChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeEE
Q psy11159 33 DMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKEL 112 (141)
Q Consensus 33 ~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 112 (141)
+.+++.+.+.+++++++++||++||+.|+.+.+.+.++++.+++++.|+.+|+++++.++++|++.++|+++++++|+.+
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~ 81 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKEV 81 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcEe
Confidence 45778888877788999999999999999999999999999987899999999999999999999999999999999999
Q ss_pred EEEecCCCHHHHHHHHHHH
Q psy11159 113 DRLIGLQDIDKLKSFIDNL 131 (141)
Q Consensus 113 ~~~~g~~~~~~l~~~i~~~ 131 (141)
.+..|..+.+++.++|++.
T Consensus 82 ~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 82 DRSVGALPKAALKQLINKN 100 (101)
T ss_pred eeecCCCCHHHHHHHHHhh
Confidence 9999999999999999875
No 23
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.91 E-value=2.3e-23 Score=124.31 Aligned_cols=93 Identities=17% Similarity=0.261 Sum_probs=85.8
Q ss_pred eChhhHHHHHhcCCCcEEEEEecCC--ChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCC
Q psy11159 32 QDMNDFEKKVKNASTPVIVDFFATW--CNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNG 109 (141)
Q Consensus 32 ~~~~~~~~~i~~~~~~~lv~f~~~~--C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 109 (141)
.+..+|++.+ +.+.++++.||++| |+.|+.+.|.+.++++++++.+.|+.+|++++++++.+|+|.++||+++|++|
T Consensus 15 ~~~~~~~~~~-~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fkdG 93 (111)
T cd02965 15 VDAATLDDWL-AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFRDG 93 (111)
T ss_pred cccccHHHHH-hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEECC
Confidence 4677888766 66788999999997 99999999999999999998899999999999999999999999999999999
Q ss_pred eEEEEEecCCCHHHHH
Q psy11159 110 KELDRLIGLQDIDKLK 125 (141)
Q Consensus 110 ~~~~~~~g~~~~~~l~ 125 (141)
+.+.+..|..+.+++.
T Consensus 94 k~v~~~~G~~~~~e~~ 109 (111)
T cd02965 94 RYVGVLAGIRDWDEYV 109 (111)
T ss_pred EEEEEEeCccCHHHHh
Confidence 9999999998888775
No 24
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.90 E-value=7.9e-23 Score=121.90 Aligned_cols=95 Identities=32% Similarity=0.707 Sum_probs=86.2
Q ss_pred eChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcC---CEEEEEEeCCCchhHHhhCCcccccEEEEEeC
Q psy11159 32 QDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG---KVVLAKVDIDELTDLAMDYEVSAVPVLIAMKN 108 (141)
Q Consensus 32 ~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 108 (141)
.+.++|++.+.+ + +++|.||++||++|+.+.|.+.++++++.+ ++.++.+|+++++.++++|+|.++||+++|++
T Consensus 5 l~~~~f~~~~~~-~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 82 (102)
T cd03005 5 LTEDNFDHHIAE-G-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFKD 82 (102)
T ss_pred CCHHHHHHHhhc-C-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEEeC
Confidence 477889988743 3 599999999999999999999999999875 69999999999999999999999999999999
Q ss_pred CeEEEEEecCCCHHHHHHHH
Q psy11159 109 GKELDRLIGLQDIDKLKSFI 128 (141)
Q Consensus 109 g~~~~~~~g~~~~~~l~~~i 128 (141)
|+.+.++.|..+.+++.+||
T Consensus 83 g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 83 GEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred CCeeeEeeCCCCHHHHHhhC
Confidence 99999999999999988875
No 25
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.90 E-value=1.4e-22 Score=122.93 Aligned_cols=90 Identities=27% Similarity=0.449 Sum_probs=82.0
Q ss_pred eeeEEeChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEE
Q psy11159 27 TSFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAM 106 (141)
Q Consensus 27 ~~~~~~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 106 (141)
.+..+.+.++|.+.+.+ +++++|+||++||++|+.+.|.+++++++++ ++.|+++|.+++++++++|+|.++||+++|
T Consensus 5 ~v~~i~~~~~~~~~i~~-~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~-~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~f 82 (113)
T cd02989 5 KYREVSDEKEFFEIVKS-SERVVCHFYHPEFFRCKIMDKHLEILAKKHL-ETKFIKVNAEKAPFLVEKLNIKVLPTVILF 82 (113)
T ss_pred CeEEeCCHHHHHHHHhC-CCcEEEEEECCCCccHHHHHHHHHHHHHHcC-CCEEEEEEcccCHHHHHHCCCccCCEEEEE
Confidence 45677788999998754 6789999999999999999999999999987 599999999999999999999999999999
Q ss_pred eCCeEEEEEecC
Q psy11159 107 KNGKELDRLIGL 118 (141)
Q Consensus 107 ~~g~~~~~~~g~ 118 (141)
++|+.+.+..|.
T Consensus 83 k~G~~v~~~~g~ 94 (113)
T cd02989 83 KNGKTVDRIVGF 94 (113)
T ss_pred ECCEEEEEEECc
Confidence 999999888765
No 26
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.90 E-value=1e-22 Score=121.60 Aligned_cols=98 Identities=29% Similarity=0.501 Sum_probs=89.3
Q ss_pred EeChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCC-
Q psy11159 31 VQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNG- 109 (141)
Q Consensus 31 ~~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g- 109 (141)
..+.+++.+.+.+.++++++.||++||++|+.+.|.+.++++.+.+.+.++.+|++++++++++|+|.++|++++|++|
T Consensus 4 ~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~ 83 (103)
T cd03001 4 ELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGAGK 83 (103)
T ss_pred EcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECCCC
Confidence 4478899998877788899999999999999999999999999987899999999999999999999999999999888
Q ss_pred eEEEEEecCCCHHHHHHHH
Q psy11159 110 KELDRLIGLQDIDKLKSFI 128 (141)
Q Consensus 110 ~~~~~~~g~~~~~~l~~~i 128 (141)
+....+.|..+.+++.+|+
T Consensus 84 ~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 84 NSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred cceeecCCCCCHHHHHHHh
Confidence 5566888999999999886
No 27
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.90 E-value=1.1e-22 Score=120.23 Aligned_cols=95 Identities=27% Similarity=0.611 Sum_probs=85.2
Q ss_pred ChhhHHHHHhcC-CCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeE
Q psy11159 33 DMNDFEKKVKNA-STPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKE 111 (141)
Q Consensus 33 ~~~~~~~~i~~~-~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 111 (141)
+.+++++.+.+. +++++|.||++||++|+.+.+.++++++.+..++.++.+|.+++++++++|++.++||+++|++|+.
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 80 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTI 80 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEE
Confidence 356788877766 6999999999999999999999999999966689999999999999999999999999999999999
Q ss_pred EEEEecCCCHHHHHHHH
Q psy11159 112 LDRLIGLQDIDKLKSFI 128 (141)
Q Consensus 112 ~~~~~g~~~~~~l~~~i 128 (141)
+.+..|. +.++|.+.|
T Consensus 81 ~~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 81 VDRVSGA-DPKELAKKV 96 (97)
T ss_pred EEEEeCC-CHHHHHHhh
Confidence 9999997 677777665
No 28
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.90 E-value=1e-22 Score=121.30 Aligned_cols=95 Identities=27% Similarity=0.528 Sum_probs=84.1
Q ss_pred eChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcC-CEEEEEEeCCCchhHHhhCCcccccEEEEEeCCe
Q psy11159 32 QDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG-KVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGK 110 (141)
Q Consensus 32 ~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 110 (141)
.+.++|++.+. ++ ++|.||++||++|+.+.|.+.++++.+.+ ++.++.+|+++++.++++|+|.++||++++++|+
T Consensus 6 l~~~~f~~~~~--~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 82 (101)
T cd02994 6 LTDSNWTLVLE--GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAKDGV 82 (101)
T ss_pred cChhhHHHHhC--CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeCCCC
Confidence 47889998663 33 78999999999999999999999988764 5999999999999999999999999999999997
Q ss_pred EEEEEecCCCHHHHHHHHHH
Q psy11159 111 ELDRLIGLQDIDKLKSFIDN 130 (141)
Q Consensus 111 ~~~~~~g~~~~~~l~~~i~~ 130 (141)
. .++.|..+.++|.+||++
T Consensus 83 ~-~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 83 F-RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred E-EEecCCCCHHHHHHHHhC
Confidence 4 788999999999998863
No 29
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.90 E-value=2.3e-22 Score=119.04 Aligned_cols=94 Identities=27% Similarity=0.513 Sum_probs=86.9
Q ss_pred hHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeEEEEE
Q psy11159 36 DFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRL 115 (141)
Q Consensus 36 ~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~ 115 (141)
.+...+.+.+++++++||++||+.|+.+.|.+.++++++++++.++.+|.++++++..+++|.++|+++++++|+.+.+.
T Consensus 4 ~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~ 83 (97)
T cd02949 4 ALRKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEI 83 (97)
T ss_pred hHHHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEE
Confidence 35566777899999999999999999999999999999987899999999999999999999999999999999999999
Q ss_pred ecCCCHHHHHHHHH
Q psy11159 116 IGLQDIDKLKSFID 129 (141)
Q Consensus 116 ~g~~~~~~l~~~i~ 129 (141)
.|..+.+++.++++
T Consensus 84 ~g~~~~~~~~~~l~ 97 (97)
T cd02949 84 SGVKMKSEYREFIE 97 (97)
T ss_pred eCCccHHHHHHhhC
Confidence 99999999988874
No 30
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.90 E-value=1.4e-22 Score=120.63 Aligned_cols=98 Identities=34% Similarity=0.651 Sum_probs=89.5
Q ss_pred ChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcC--CEEEEEEeCCCchhHHhhCCcccccEEEEEeCCe
Q psy11159 33 DMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG--KVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGK 110 (141)
Q Consensus 33 ~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 110 (141)
+.++|.+.+. .+++++|+||++||+.|+.+.+.+.++++.+.+ ++.++.+|++++++++++|+|.++|++++|++|+
T Consensus 2 ~~~~~~~~~~-~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~ 80 (102)
T TIGR01126 2 TASNFDDIVL-SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGK 80 (102)
T ss_pred chhhHHHHhc-cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCC
Confidence 5678888775 788999999999999999999999999999886 6999999999999999999999999999998887
Q ss_pred EEEEEecCCCHHHHHHHHHHH
Q psy11159 111 ELDRLIGLQDIDKLKSFIDNL 131 (141)
Q Consensus 111 ~~~~~~g~~~~~~l~~~i~~~ 131 (141)
...++.|..+.+++..||+++
T Consensus 81 ~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 81 KPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred cceeecCCCCHHHHHHHHHhc
Confidence 788899999999999999875
No 31
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.89 E-value=5.2e-22 Score=124.91 Aligned_cols=100 Identities=24% Similarity=0.501 Sum_probs=87.5
Q ss_pred hhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCc--hhHHhhCCcccccEEEEE-eCCeE
Q psy11159 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDEL--TDLAMDYEVSAVPVLIAM-KNGKE 111 (141)
Q Consensus 35 ~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~-~~g~~ 111 (141)
.++.+. ...+++++|+||++||++|+.+.|.+.++++.+.+++.|+.+|++.+ ..++++|+|.++||+++| ++|++
T Consensus 11 ~~~~~a-~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~ 89 (142)
T cd02950 11 TPPEVA-LSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNE 89 (142)
T ss_pred CCHHHH-HhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCE
Confidence 345553 35689999999999999999999999999999987788888888765 478999999999999999 58999
Q ss_pred EEEEecCCCHHHHHHHHHHHHhcc
Q psy11159 112 LDRLIGLQDIDKLKSFIDNLVEKQ 135 (141)
Q Consensus 112 ~~~~~g~~~~~~l~~~i~~~~~~~ 135 (141)
+.+..|..+.++|.++|+++++..
T Consensus 90 v~~~~G~~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 90 EGQSIGLQPKQVLAQNLDALVAGE 113 (142)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCC
Confidence 999999999999999999998653
No 32
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.89 E-value=7.5e-23 Score=124.27 Aligned_cols=89 Identities=24% Similarity=0.474 Sum_probs=80.1
Q ss_pred eeEEeChhhHHHHHhcC--CCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEE
Q psy11159 28 SFKVQDMNDFEKKVKNA--STPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIA 105 (141)
Q Consensus 28 ~~~~~~~~~~~~~i~~~--~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 105 (141)
+.++ +.++|.+.+.+. +++++|+||++||++|+.+.|.+++++++++ ++.|+++|++++ +++++|+|.++||+++
T Consensus 6 v~~i-~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-~v~f~~vd~~~~-~l~~~~~i~~~Pt~~~ 82 (113)
T cd02957 6 VREI-SSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP-ETKFVKINAEKA-FLVNYLDIKVLPTLLV 82 (113)
T ss_pred EEEE-cHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEEchhh-HHHHhcCCCcCCEEEE
Confidence 4455 448999988766 4899999999999999999999999999997 689999999999 9999999999999999
Q ss_pred EeCCeEEEEEecCC
Q psy11159 106 MKNGKELDRLIGLQ 119 (141)
Q Consensus 106 ~~~g~~~~~~~g~~ 119 (141)
|++|+.+.+..|..
T Consensus 83 f~~G~~v~~~~G~~ 96 (113)
T cd02957 83 YKNGELIDNIVGFE 96 (113)
T ss_pred EECCEEEEEEecHH
Confidence 99999999998864
No 33
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.89 E-value=6.2e-22 Score=118.38 Aligned_cols=96 Identities=32% Similarity=0.604 Sum_probs=85.8
Q ss_pred eChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhc--CCEEEEEEeCCC--chhHHhhCCcccccEEEEEe
Q psy11159 32 QDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMK--GKVVLAKVDIDE--LTDLAMDYEVSAVPVLIAMK 107 (141)
Q Consensus 32 ~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~ 107 (141)
.+..++++.+. .+++++|.||++||++|+.+.|.+.++++.++ +.+.++.+|++. ++.++++++|.++||+++++
T Consensus 5 l~~~~~~~~~~-~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~ 83 (104)
T cd02997 5 LTDEDFRKFLK-KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFE 83 (104)
T ss_pred echHhHHHHHh-hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEe
Confidence 36678888764 46699999999999999999999999998887 568999999998 89999999999999999999
Q ss_pred CCeEEEEEecCCCHHHHHHHH
Q psy11159 108 NGKELDRLIGLQDIDKLKSFI 128 (141)
Q Consensus 108 ~g~~~~~~~g~~~~~~l~~~i 128 (141)
+|+.+.++.|..+.+.+.+||
T Consensus 84 ~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 84 NGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred CCCeeEEeCCCCCHHHHHhhC
Confidence 999999999999999988775
No 34
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.89 E-value=3.7e-22 Score=119.06 Aligned_cols=98 Identities=15% Similarity=0.273 Sum_probs=82.7
Q ss_pred hhhHHHHHhcC-CCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeEE
Q psy11159 34 MNDFEKKVKNA-STPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKEL 112 (141)
Q Consensus 34 ~~~~~~~i~~~-~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 112 (141)
.+++++.+.+. ++++||.|+++||++|+.+.|.+.++++++++.+.|+.||+|+.+++.++|+|...||+++|++|+.+
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~ 81 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHM 81 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEE
Confidence 45677777765 89999999999999999999999999999985599999999999999999999999999999999877
Q ss_pred EEEecC----------CCHHHHHHHHHHH
Q psy11159 113 DRLIGL----------QDIDKLKSFIDNL 131 (141)
Q Consensus 113 ~~~~g~----------~~~~~l~~~i~~~ 131 (141)
.--.|. .+.+++...++..
T Consensus 82 ~~d~gt~~~~k~~~~~~~k~~~idi~e~~ 110 (114)
T cd02986 82 KVDYGSPDHTKFVGSFKTKQDFIDLIEVI 110 (114)
T ss_pred EEecCCCCCcEEEEEcCchhHHHHHHHHH
Confidence 544443 2446666666543
No 35
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.89 E-value=1.1e-21 Score=124.13 Aligned_cols=90 Identities=23% Similarity=0.488 Sum_probs=80.6
Q ss_pred eeEEeChhhHHHHHhcC-CCcEEEEEecCCChhhhhhhHHHHHHHHHhcC-CEEEEEEeCCCchhHHhhCCccc------
Q psy11159 28 SFKVQDMNDFEKKVKNA-STPVIVDFFATWCNPCKTLTPRLEAVIDEMKG-KVVLAKVDIDELTDLAMDYEVSA------ 99 (141)
Q Consensus 28 ~~~~~~~~~~~~~i~~~-~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~------ 99 (141)
.+...+.++|++.+..+ +++++|+||++||++|+.+.|.++++++++.+ ++.|+.+|++++++++++|+|.+
T Consensus 29 ~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~ 108 (152)
T cd02962 29 HIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQ 108 (152)
T ss_pred ccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCC
Confidence 44445778899887544 67999999999999999999999999999874 59999999999999999999988
Q ss_pred ccEEEEEeCCeEEEEEec
Q psy11159 100 VPVLIAMKNGKELDRLIG 117 (141)
Q Consensus 100 ~Pt~~~~~~g~~~~~~~g 117 (141)
+||+++|++|+++.+..|
T Consensus 109 ~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 109 LPTIILFQGGKEVARRPY 126 (152)
T ss_pred CCEEEEEECCEEEEEEec
Confidence 999999999999999987
No 36
>KOG0908|consensus
Probab=99.89 E-value=2.8e-22 Score=132.50 Aligned_cols=111 Identities=30% Similarity=0.573 Sum_probs=102.6
Q ss_pred eeeEEeChhhHHHHHhcC-CCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEE
Q psy11159 27 TSFKVQDMNDFEKKVKNA-STPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIA 105 (141)
Q Consensus 27 ~~~~~~~~~~~~~~i~~~-~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 105 (141)
.++.+.+..+|...+... .+.++|.|+++||++|+++.|.+..++.+|+ +..|.+||+|+....+..+||...||+++
T Consensus 2 ~Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp-~aVFlkVdVd~c~~taa~~gV~amPTFif 80 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP-GAVFLKVDVDECRGTAATNGVNAMPTFIF 80 (288)
T ss_pred CeEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCc-ccEEEEEeHHHhhchhhhcCcccCceEEE
Confidence 356788999999887655 6899999999999999999999999999998 79999999999999999999999999999
Q ss_pred EeCCeEEEEEecCCCHHHHHHHHHHHHhcccCCC
Q psy11159 106 MKNGKELDRLIGLQDIDKLKSFIDNLVEKQSAVN 139 (141)
Q Consensus 106 ~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~~ 139 (141)
|.||..+.++.|. +...|+..+.++..+..+.+
T Consensus 81 f~ng~kid~~qGA-d~~gLe~kv~~~~stsaa~~ 113 (288)
T KOG0908|consen 81 FRNGVKIDQIQGA-DASGLEEKVAKYASTSAASS 113 (288)
T ss_pred EecCeEeeeecCC-CHHHHHHHHHHHhccCcccc
Confidence 9999999999999 99999999999998877765
No 37
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.89 E-value=4.9e-22 Score=118.76 Aligned_cols=98 Identities=31% Similarity=0.628 Sum_probs=87.6
Q ss_pred EEeChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcC--CEEEEEEeCCCchhHHhhCCcccccEEEEEe
Q psy11159 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG--KVVLAKVDIDELTDLAMDYEVSAVPVLIAMK 107 (141)
Q Consensus 30 ~~~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 107 (141)
...+.++|++.+.+.+++++|+||++||++|+.+.|.+.++++.+++ ++.++.+|++++ +++..+++.++||+++|+
T Consensus 3 ~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~~ 81 (104)
T cd02995 3 KVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFFP 81 (104)
T ss_pred EEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEEc
Confidence 45578899998888889999999999999999999999999999875 599999999998 688899999999999998
Q ss_pred CCe--EEEEEecCCCHHHHHHHH
Q psy11159 108 NGK--ELDRLIGLQDIDKLKSFI 128 (141)
Q Consensus 108 ~g~--~~~~~~g~~~~~~l~~~i 128 (141)
+|+ ...++.|..+.+++.+||
T Consensus 82 ~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 82 AGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred CCCcCCceEccCCcCHHHHHhhC
Confidence 887 677889999999998875
No 38
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.88 E-value=7e-22 Score=118.24 Aligned_cols=97 Identities=37% Similarity=0.650 Sum_probs=86.6
Q ss_pred eChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhc--CCEEEEEEeCCC-chhHHhhCCcccccEEEEEeC
Q psy11159 32 QDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMK--GKVVLAKVDIDE-LTDLAMDYEVSAVPVLIAMKN 108 (141)
Q Consensus 32 ~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~~vd~~~-~~~~~~~~~v~~~Pt~~~~~~ 108 (141)
.+.+++++.+.++++++++.||++||++|+.+.|.+.++++.++ +++.++.+|+++ +++++++|+|.++|++++|.+
T Consensus 5 l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~~~~ 84 (105)
T cd02998 5 LTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFFPK 84 (105)
T ss_pred cchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEEEeC
Confidence 36688888877778899999999999999999999999999986 469999999999 999999999999999999976
Q ss_pred C-eEEEEEecCCCHHHHHHHH
Q psy11159 109 G-KELDRLIGLQDIDKLKSFI 128 (141)
Q Consensus 109 g-~~~~~~~g~~~~~~l~~~i 128 (141)
| +....+.|..+.+++.+||
T Consensus 85 ~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 85 GSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred CCCCccccCCccCHHHHHhhC
Confidence 6 6677888988999988875
No 39
>PTZ00051 thioredoxin; Provisional
Probab=99.88 E-value=2e-21 Score=115.11 Aligned_cols=96 Identities=36% Similarity=0.704 Sum_probs=85.6
Q ss_pred eeEEeChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEe
Q psy11159 28 SFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMK 107 (141)
Q Consensus 28 ~~~~~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 107 (141)
+..+.+.+++.+.+ +.+++++++||++||++|+.+.+.+.++++.++ ++.|+.+|++++..++++|++.++||+++++
T Consensus 2 v~~i~~~~~~~~~~-~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 79 (98)
T PTZ00051 2 VHIVTSQAEFESTL-SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT-KMVFVKVDVDELSEVAEKENITSMPTFKVFK 79 (98)
T ss_pred eEEecCHHHHHHHH-hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-CcEEEEEECcchHHHHHHCCCceeeEEEEEe
Confidence 35677888888865 568899999999999999999999999999887 5999999999999999999999999999999
Q ss_pred CCeEEEEEecCCCHHHHHH
Q psy11159 108 NGKELDRLIGLQDIDKLKS 126 (141)
Q Consensus 108 ~g~~~~~~~g~~~~~~l~~ 126 (141)
+|+.+.+..|. ..++|.+
T Consensus 80 ~g~~~~~~~G~-~~~~~~~ 97 (98)
T PTZ00051 80 NGSVVDTLLGA-NDEALKQ 97 (98)
T ss_pred CCeEEEEEeCC-CHHHhhc
Confidence 99999999997 6666653
No 40
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.88 E-value=3e-21 Score=125.18 Aligned_cols=104 Identities=18% Similarity=0.378 Sum_probs=88.5
Q ss_pred eeeeeEEeChhhHHHHHhcCC--CcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccE
Q psy11159 25 VYTSFKVQDMNDFEKKVKNAS--TPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPV 102 (141)
Q Consensus 25 ~~~~~~~~~~~~~~~~i~~~~--~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt 102 (141)
...+.++.+.++|.+.+.+.+ .++||+||++||++|+.+.|.|.+++.+++ .+.|++||++++ ++..+|+|.++||
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~-~l~~~f~v~~vPT 138 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT-GASDEFDTDALPA 138 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch-hhHHhCCCCCCCE
Confidence 445667766699999887654 499999999999999999999999999998 699999999988 8999999999999
Q ss_pred EEEEeCCeEEEEEecC-------CCHHHHHHHHHH
Q psy11159 103 LIAMKNGKELDRLIGL-------QDIDKLKSFIDN 130 (141)
Q Consensus 103 ~~~~~~g~~~~~~~g~-------~~~~~l~~~i~~ 130 (141)
+++|++|+.+.+..|. .+.+.|+.+|.+
T Consensus 139 lllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 139 LLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred EEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 9999999999888765 244566666554
No 41
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.87 E-value=7.2e-22 Score=118.28 Aligned_cols=94 Identities=27% Similarity=0.437 Sum_probs=82.3
Q ss_pred hhHHHHHhcCCCcEEEEEecCCChhhhhhhHHH---HHHHHHhcCCEEEEEEeCCC----chhHHhhCCcccccEEEEEe
Q psy11159 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRL---EAVIDEMKGKVVLAKVDIDE----LTDLAMDYEVSAVPVLIAMK 107 (141)
Q Consensus 35 ~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~ 107 (141)
+++.+.+ +++++++|+||++||++|+.+.+.+ .++.+.+.+++.++.+|+++ ..+++++|++.++||+++|+
T Consensus 2 ~~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~ 80 (104)
T cd02953 2 AALAQAL-AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYG 80 (104)
T ss_pred HHHHHHH-HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence 4566654 5689999999999999999999988 67888887689999999987 56899999999999999997
Q ss_pred --CCeEEEEEecCCCHHHHHHHHH
Q psy11159 108 --NGKELDRLIGLQDIDKLKSFID 129 (141)
Q Consensus 108 --~g~~~~~~~g~~~~~~l~~~i~ 129 (141)
+|+.+.+..|..+.++|.++|+
T Consensus 81 ~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 81 PGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred CCCCCCCcccccccCHHHHHHHhC
Confidence 7899999999999999988874
No 42
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.87 E-value=7.1e-21 Score=113.96 Aligned_cols=94 Identities=27% Similarity=0.527 Sum_probs=81.1
Q ss_pred hhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhc---CCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeE
Q psy11159 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMK---GKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKE 111 (141)
Q Consensus 35 ~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 111 (141)
+++++ +. .+++++|.||++||++|+.+.|.++++++.++ ..+.++.+|+++.++++++|+|.++||+++|++| .
T Consensus 7 ~~~~~-~~-~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~-~ 83 (104)
T cd03000 7 DSFKD-VR-KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD-L 83 (104)
T ss_pred hhhhh-hc-cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCC-C
Confidence 55665 33 36799999999999999999999999999884 2499999999999999999999999999999766 4
Q ss_pred EEEEecCCCHHHHHHHHHHH
Q psy11159 112 LDRLIGLQDIDKLKSFIDNL 131 (141)
Q Consensus 112 ~~~~~g~~~~~~l~~~i~~~ 131 (141)
..++.|..+.+++.+++++.
T Consensus 84 ~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 84 AYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred ceeecCCCCHHHHHHHHHhh
Confidence 56788988999999998864
No 43
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.86 E-value=7e-21 Score=114.90 Aligned_cols=99 Identities=19% Similarity=0.447 Sum_probs=82.9
Q ss_pred EEeChhhHHHHHh--cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcC-CEEEEEEeCCC-chhHHh-hCCcccccEEE
Q psy11159 30 KVQDMNDFEKKVK--NASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG-KVVLAKVDIDE-LTDLAM-DYEVSAVPVLI 104 (141)
Q Consensus 30 ~~~~~~~~~~~i~--~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~-~~~~~~-~~~v~~~Pt~~ 104 (141)
...+.++|++.+. +.+++++|.||++||++|+.+.|.+.++++.+.+ ++.++.+|++. +..++. .+++.++||++
T Consensus 4 ~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~ 83 (109)
T cd02993 4 VTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTIL 83 (109)
T ss_pred eeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEE
Confidence 3447788988774 3588999999999999999999999999999986 49999999998 567776 59999999999
Q ss_pred EEeCC-eEEEEEecC-CCHHHHHHHH
Q psy11159 105 AMKNG-KELDRLIGL-QDIDKLKSFI 128 (141)
Q Consensus 105 ~~~~g-~~~~~~~g~-~~~~~l~~~i 128 (141)
+|.+| +....+.|. .+.+.|..||
T Consensus 84 ~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 84 FFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEcCCCCCceeccCCCCCHHHHHhhC
Confidence 99665 466778884 7888888775
No 44
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.86 E-value=8.5e-21 Score=112.36 Aligned_cols=95 Identities=38% Similarity=0.718 Sum_probs=84.9
Q ss_pred ChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHh--cCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCC-
Q psy11159 33 DMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEM--KGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNG- 109 (141)
Q Consensus 33 ~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~--~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g- 109 (141)
+.+++.+.+.+. ++++|.||++||+.|+.+.+.+.++++.+ .+.+.++.+|+++++.++++|+|.++||++++++|
T Consensus 4 ~~~~~~~~i~~~-~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~~ 82 (101)
T cd02961 4 TDDNFDELVKDS-KDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNGS 82 (101)
T ss_pred cHHHHHHHHhCC-CcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCCC
Confidence 567888876554 49999999999999999999999999999 56899999999999999999999999999999777
Q ss_pred eEEEEEecCCCHHHHHHHH
Q psy11159 110 KELDRLIGLQDIDKLKSFI 128 (141)
Q Consensus 110 ~~~~~~~g~~~~~~l~~~i 128 (141)
+...++.|..+.+++.+|+
T Consensus 83 ~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 83 KEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred cccccCCCCcCHHHHHhhC
Confidence 7888899988899888774
No 45
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.86 E-value=2.1e-20 Score=115.43 Aligned_cols=99 Identities=26% Similarity=0.455 Sum_probs=83.4
Q ss_pred hhHHHHHhcCC-CcEEEEEecCCChhhhhhhHHHH---HHHHHhcCCEEEEEEeCCCc-------------hhHHhhCCc
Q psy11159 35 NDFEKKVKNAS-TPVIVDFFATWCNPCKTLTPRLE---AVIDEMKGKVVLAKVDIDEL-------------TDLAMDYEV 97 (141)
Q Consensus 35 ~~~~~~i~~~~-~~~lv~f~~~~C~~C~~~~~~l~---~~~~~~~~~~~~~~vd~~~~-------------~~~~~~~~v 97 (141)
+++.+. .+.+ ++++|.||++||++|+.+.+.+. .+.+.+.+++.++.+|.+.+ .+++.+|+|
T Consensus 4 ~~~~~a-~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v 82 (125)
T cd02951 4 EDLAEA-AADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRV 82 (125)
T ss_pred HHHHHH-HHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCC
Confidence 445554 4556 99999999999999999999884 56666666788999998864 688999999
Q ss_pred ccccEEEEEeC--CeEEEEEecCCCHHHHHHHHHHHHhc
Q psy11159 98 SAVPVLIAMKN--GKELDRLIGLQDIDKLKSFIDNLVEK 134 (141)
Q Consensus 98 ~~~Pt~~~~~~--g~~~~~~~g~~~~~~l~~~i~~~~~~ 134 (141)
.++||++++.+ |+.+.+..|..+.+.+.++|+.++.+
T Consensus 83 ~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 83 RFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred ccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 99999999954 68999999999999999999998765
No 46
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.86 E-value=1.5e-20 Score=114.05 Aligned_cols=95 Identities=26% Similarity=0.363 Sum_probs=82.1
Q ss_pred HHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeEEE--E
Q psy11159 37 FEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELD--R 114 (141)
Q Consensus 37 ~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~--~ 114 (141)
+.+.+ .++..++|.||++||++|+.+.|.+++++..+ +.+.+..+|.+++++++++|+|.++||++++++|+... +
T Consensus 15 ~~~~l-~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~ 92 (113)
T cd02975 15 FFKEM-KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIR 92 (113)
T ss_pred HHHHh-CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEE
Confidence 44433 34666888999999999999999999999887 47999999999999999999999999999998876554 7
Q ss_pred EecCCCHHHHHHHHHHHHh
Q psy11159 115 LIGLQDIDKLKSFIDNLVE 133 (141)
Q Consensus 115 ~~g~~~~~~l~~~i~~~~~ 133 (141)
+.|..+..++.++|+.++.
T Consensus 93 ~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 93 YYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred EEecCchHHHHHHHHHHHh
Confidence 7898899999999998874
No 47
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.85 E-value=3.9e-20 Score=113.46 Aligned_cols=98 Identities=12% Similarity=0.244 Sum_probs=79.9
Q ss_pred eEEeChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCch-----------hHHhhCC-
Q psy11159 29 FKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT-----------DLAMDYE- 96 (141)
Q Consensus 29 ~~~~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~-----------~~~~~~~- 96 (141)
+...+.+++.+.+. +++.++|+|+++|||+|+.+.|.|.+++++. +..++++|++.+. ++.++|+
T Consensus 8 ~~~it~~~~~~~i~-~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~--~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i 84 (122)
T TIGR01295 8 LEVTTVVRALEALD-KKETATFFIGRKTCPYCRKFSGTLSGVVAQT--KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGI 84 (122)
T ss_pred ceecCHHHHHHHHH-cCCcEEEEEECCCChhHHHHhHHHHHHHHhc--CCcEEEEECCCccCcCcccHHHHHHHHHHcCC
Confidence 44557888888764 5777999999999999999999999999984 5778888888543 4455654
Q ss_pred ---cccccEEEEEeCCeEEEEEec-CCCHHHHHHHHH
Q psy11159 97 ---VSAVPVLIAMKNGKELDRLIG-LQDIDKLKSFID 129 (141)
Q Consensus 97 ---v~~~Pt~~~~~~g~~~~~~~g-~~~~~~l~~~i~ 129 (141)
+.++||+++|++|+.+.+..| ..+.++|.+++.
T Consensus 85 ~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 85 PTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred cccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 556999999999999999988 456889988864
No 48
>PTZ00102 disulphide isomerase; Provisional
Probab=99.84 E-value=5e-20 Score=136.17 Aligned_cols=110 Identities=23% Similarity=0.430 Sum_probs=97.5
Q ss_pred eeeEEeChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcC--CEEEEEEeCCCchhHHhhCCcccccEEE
Q psy11159 27 TSFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG--KVVLAKVDIDELTDLAMDYEVSAVPVLI 104 (141)
Q Consensus 27 ~~~~~~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 104 (141)
..+...+.++|++.+.+++++++|.|||+||++|+.+.|.+.++++.+++ .+.++.+|++.+...++.+++.++||++
T Consensus 357 ~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~ 436 (477)
T PTZ00102 357 GPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTIL 436 (477)
T ss_pred CCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEE
Confidence 34666688999998888899999999999999999999999999988864 5899999999999999999999999999
Q ss_pred EEeCCeEE-EEEecCCCHHHHHHHHHHHHhccc
Q psy11159 105 AMKNGKEL-DRLIGLQDIDKLKSFIDNLVEKQS 136 (141)
Q Consensus 105 ~~~~g~~~-~~~~g~~~~~~l~~~i~~~~~~~~ 136 (141)
+|++|+.+ .++.|..+.+.+.+||+++...+.
T Consensus 437 ~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~~~ 469 (477)
T PTZ00102 437 FVKAGERTPIPYEGERTVEGFKEFVNKHATNPF 469 (477)
T ss_pred EEECCCcceeEecCcCCHHHHHHHHHHcCCCCc
Confidence 99877655 578999999999999999886543
No 49
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.84 E-value=1.3e-19 Score=105.42 Aligned_cols=91 Identities=44% Similarity=0.905 Sum_probs=81.8
Q ss_pred hHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeEEEEE
Q psy11159 36 DFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRL 115 (141)
Q Consensus 36 ~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~ 115 (141)
++.+.+.+ +++++++||++||+.|+.+.+.+.++.+. .+++.++.+|++.+..+++.|++.++|+++++.+|+.+..+
T Consensus 2 ~~~~~~~~-~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~ 79 (93)
T cd02947 2 EFEELIKS-AKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRV 79 (93)
T ss_pred chHHHHhc-CCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEE
Confidence 45665544 48999999999999999999999999888 45799999999999999999999999999999999999999
Q ss_pred ecCCCHHHHHHHH
Q psy11159 116 IGLQDIDKLKSFI 128 (141)
Q Consensus 116 ~g~~~~~~l~~~i 128 (141)
.|..+.+++.++|
T Consensus 80 ~g~~~~~~l~~~i 92 (93)
T cd02947 80 VGADPKEELEEFL 92 (93)
T ss_pred ecCCCHHHHHHHh
Confidence 9998888888876
No 50
>KOG0190|consensus
Probab=99.83 E-value=3.4e-20 Score=134.53 Aligned_cols=109 Identities=32% Similarity=0.575 Sum_probs=96.8
Q ss_pred eeeeEEeChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcC---CEEEEEEeCCCchhHHhhCCcccccE
Q psy11159 26 YTSFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG---KVVLAKVDIDELTDLAMDYEVSAVPV 102 (141)
Q Consensus 26 ~~~~~~~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt 102 (141)
...+-..+.++|...+ ..+..++|.||||||++|+++.|.+.+.++.+.. .+.+++||+.++.+++.+|+|.++||
T Consensus 24 ~~~Vl~Lt~dnf~~~i-~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPT 102 (493)
T KOG0190|consen 24 EEDVLVLTKDNFKETI-NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPT 102 (493)
T ss_pred ccceEEEecccHHHHh-ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCe
Confidence 4445555889999976 5688899999999999999999999999988764 58999999999999999999999999
Q ss_pred EEEEeCCeEEEEEecCCCHHHHHHHHHHHHhcc
Q psy11159 103 LIAMKNGKELDRLIGLQDIDKLKSFIDNLVEKQ 135 (141)
Q Consensus 103 ~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~ 135 (141)
+.+|++|+....|.|....+.+..|+.+.....
T Consensus 103 lkiFrnG~~~~~Y~G~r~adgIv~wl~kq~gPa 135 (493)
T KOG0190|consen 103 LKIFRNGRSAQDYNGPREADGIVKWLKKQSGPA 135 (493)
T ss_pred EEEEecCCcceeccCcccHHHHHHHHHhccCCC
Confidence 999999998888999999999999999876543
No 51
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.81 E-value=5.7e-19 Score=107.27 Aligned_cols=81 Identities=25% Similarity=0.509 Sum_probs=71.6
Q ss_pred EEeChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcC---CEEEEEEeCC--CchhHHhhCCcccccEEE
Q psy11159 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG---KVVLAKVDID--ELTDLAMDYEVSAVPVLI 104 (141)
Q Consensus 30 ~~~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~ 104 (141)
...+.++|++.+.+++++++|.||++||++|+.+.|.++++++.+++ .+.++.+|++ .+.+++++|+|.++||++
T Consensus 4 ~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~ 83 (114)
T cd02992 4 IVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLR 83 (114)
T ss_pred EECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEE
Confidence 34578899999888889999999999999999999999999998753 4889999975 467899999999999999
Q ss_pred EEeCCe
Q psy11159 105 AMKNGK 110 (141)
Q Consensus 105 ~~~~g~ 110 (141)
+|++|+
T Consensus 84 lf~~~~ 89 (114)
T cd02992 84 YFPPFS 89 (114)
T ss_pred EECCCC
Confidence 998886
No 52
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.81 E-value=6.9e-19 Score=115.52 Aligned_cols=99 Identities=18% Similarity=0.399 Sum_probs=82.9
Q ss_pred eeeEEeChhhHHHHHhcC--CCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEE
Q psy11159 27 TSFKVQDMNDFEKKVKNA--STPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLI 104 (141)
Q Consensus 27 ~~~~~~~~~~~~~~i~~~--~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 104 (141)
.+..+ +..+|...+... +.++||+||++||++|+.+.|.|.+++.+|+ .+.|+++|+++. ...|++.++||++
T Consensus 83 ~v~ei-s~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad~~---~~~~~i~~lPTll 157 (192)
T cd02988 83 EVYEI-SKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIISTQC---IPNYPDKNLPTIL 157 (192)
T ss_pred eEEEe-CHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhHHh---HhhCCCCCCCEEE
Confidence 34444 778888777655 3589999999999999999999999999997 699999999864 5889999999999
Q ss_pred EEeCCeEEEEEecC-------CCHHHHHHHHHH
Q psy11159 105 AMKNGKELDRLIGL-------QDIDKLKSFIDN 130 (141)
Q Consensus 105 ~~~~g~~~~~~~g~-------~~~~~l~~~i~~ 130 (141)
+|++|+.+.++.|. .+.++|+.+|.+
T Consensus 158 iyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 158 VYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred EEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 99999999998875 355677766654
No 53
>PTZ00062 glutaredoxin; Provisional
Probab=99.81 E-value=7.1e-19 Score=115.96 Aligned_cols=93 Identities=14% Similarity=0.193 Sum_probs=82.4
Q ss_pred eChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeE
Q psy11159 32 QDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKE 111 (141)
Q Consensus 32 ~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 111 (141)
.+.+++.+.+..+...++++|||+||++|+.+.|.+.+++++++ ++.|+.||.+ |+|.++||+++|++|+.
T Consensus 4 ~~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~-~~~F~~V~~d--------~~V~~vPtfv~~~~g~~ 74 (204)
T PTZ00062 4 IKKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP-SLEFYVVNLA--------DANNEYGVFEFYQNSQL 74 (204)
T ss_pred CCHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC-CcEEEEEccc--------cCcccceEEEEEECCEE
Confidence 46678888776554778999999999999999999999999998 6999999987 99999999999999999
Q ss_pred EEEEecCCCHHHHHHHHHHHHhc
Q psy11159 112 LDRLIGLQDIDKLKSFIDNLVEK 134 (141)
Q Consensus 112 ~~~~~g~~~~~~l~~~i~~~~~~ 134 (141)
+.++.|. +..++..+++++...
T Consensus 75 i~r~~G~-~~~~~~~~~~~~~~~ 96 (204)
T PTZ00062 75 INSLEGC-NTSTLVSFIRGWAQK 96 (204)
T ss_pred EeeeeCC-CHHHHHHHHHHHcCC
Confidence 9999998 788888888776543
No 54
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.81 E-value=8.5e-19 Score=128.97 Aligned_cols=104 Identities=35% Similarity=0.630 Sum_probs=92.7
Q ss_pred EEeChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcC---CEEEEEEeCCCchhHHhhCCcccccEEEEE
Q psy11159 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG---KVVLAKVDIDELTDLAMDYEVSAVPVLIAM 106 (141)
Q Consensus 30 ~~~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 106 (141)
...+.+++.+.+. .+++++|.|||+||++|+.+.|.+.++++.+.+ ++.|+.+|++++.+++++|+|.++||+++|
T Consensus 4 ~~l~~~~~~~~i~-~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~ 82 (462)
T TIGR01130 4 LVLTKDNFDDFIK-SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIF 82 (462)
T ss_pred eECCHHHHHHHHh-cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEE
Confidence 3457889998774 577999999999999999999999999887753 499999999999999999999999999999
Q ss_pred eCCeE-EEEEecCCCHHHHHHHHHHHHhc
Q psy11159 107 KNGKE-LDRLIGLQDIDKLKSFIDNLVEK 134 (141)
Q Consensus 107 ~~g~~-~~~~~g~~~~~~l~~~i~~~~~~ 134 (141)
++|+. +..+.|..+.+.+.+|+.+.+..
T Consensus 83 ~~g~~~~~~~~g~~~~~~l~~~i~~~~~~ 111 (462)
T TIGR01130 83 RNGEDSVSDYNGPRDADGIVKYMKKQSGP 111 (462)
T ss_pred eCCccceeEecCCCCHHHHHHHHHHhcCC
Confidence 99987 78899999999999999998753
No 55
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.80 E-value=5.4e-19 Score=107.28 Aligned_cols=83 Identities=22% Similarity=0.513 Sum_probs=73.1
Q ss_pred EEeChhhHHHHHhcC-CCcEEEEEec-------CCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCC-------chhHHhh
Q psy11159 30 KVQDMNDFEKKVKNA-STPVIVDFFA-------TWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDE-------LTDLAMD 94 (141)
Q Consensus 30 ~~~~~~~~~~~i~~~-~~~~lv~f~~-------~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~-------~~~~~~~ 94 (141)
.+.+.++|.+.+.+. +++++|.||| +||++|+.+.|.++++.+++++++.|+.||+++ +.++..+
T Consensus 5 ~~~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~ 84 (119)
T cd02952 5 AVRGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTD 84 (119)
T ss_pred cccCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhc
Confidence 456888999988765 6899999999 999999999999999999998779999999976 4589999
Q ss_pred CCcc-cccEEEEEeCCeEE
Q psy11159 95 YEVS-AVPVLIAMKNGKEL 112 (141)
Q Consensus 95 ~~v~-~~Pt~~~~~~g~~~ 112 (141)
++|. ++||++++++|+.+
T Consensus 85 ~~I~~~iPT~~~~~~~~~l 103 (119)
T cd02952 85 PKLTTGVPTLLRWKTPQRL 103 (119)
T ss_pred cCcccCCCEEEEEcCCcee
Confidence 9999 99999999877543
No 56
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.80 E-value=1.2e-18 Score=126.92 Aligned_cols=104 Identities=18% Similarity=0.375 Sum_probs=86.4
Q ss_pred eeEEeChhhHHHHHh--cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCC-EEEEEEeCCCch-hH-HhhCCcccccE
Q psy11159 28 SFKVQDMNDFEKKVK--NASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGK-VVLAKVDIDELT-DL-AMDYEVSAVPV 102 (141)
Q Consensus 28 ~~~~~~~~~~~~~i~--~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~vd~~~~~-~~-~~~~~v~~~Pt 102 (141)
.+...+.++|+..+. +.+++++|.||++||++|+.+.|.++++++++.+. +.|+.+|+|.+. ++ +++|+|.++||
T Consensus 352 ~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PT 431 (463)
T TIGR00424 352 NVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPT 431 (463)
T ss_pred CeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccce
Confidence 344458889999874 46889999999999999999999999999999754 899999998764 44 47899999999
Q ss_pred EEEEeCCe-EEEEEe-cCCCHHHHHHHHHHH
Q psy11159 103 LIAMKNGK-ELDRLI-GLQDIDKLKSFIDNL 131 (141)
Q Consensus 103 ~~~~~~g~-~~~~~~-g~~~~~~l~~~i~~~ 131 (141)
+++|++|+ ....+. |..+.+.|..||+.+
T Consensus 432 ii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 432 ILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred EEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 99998885 334565 578999999999864
No 57
>PTZ00102 disulphide isomerase; Provisional
Probab=99.80 E-value=1.6e-18 Score=128.16 Aligned_cols=105 Identities=29% Similarity=0.540 Sum_probs=92.7
Q ss_pred eeEEeChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhc---CCEEEEEEeCCCchhHHhhCCcccccEEE
Q psy11159 28 SFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMK---GKVVLAKVDIDELTDLAMDYEVSAVPVLI 104 (141)
Q Consensus 28 ~~~~~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 104 (141)
.+...+.+++.+.+ +.+++++|.||++||++|+.+.|.+.++++.+. .++.++.+|++++.+++++|+|.++||++
T Consensus 33 ~v~~l~~~~f~~~i-~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~ 111 (477)
T PTZ00102 33 HVTVLTDSTFDKFI-TENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIK 111 (477)
T ss_pred CcEEcchhhHHHHH-hcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEE
Confidence 34455888999876 446789999999999999999999999887664 35999999999999999999999999999
Q ss_pred EEeCCeEEEEEecCCCHHHHHHHHHHHHhc
Q psy11159 105 AMKNGKELDRLIGLQDIDKLKSFIDNLVEK 134 (141)
Q Consensus 105 ~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~ 134 (141)
+|++|+.+ ++.|..+.+.|.+|+.+....
T Consensus 112 ~~~~g~~~-~y~g~~~~~~l~~~l~~~~~~ 140 (477)
T PTZ00102 112 FFNKGNPV-NYSGGRTADGIVSWIKKLTGP 140 (477)
T ss_pred EEECCceE-EecCCCCHHHHHHHHHHhhCC
Confidence 99999877 899999999999999998754
No 58
>PLN02309 5'-adenylylsulfate reductase
Probab=99.80 E-value=2.1e-18 Score=125.59 Aligned_cols=104 Identities=22% Similarity=0.476 Sum_probs=87.8
Q ss_pred eeEEeChhhHHHHHh--cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcC-CEEEEEEeCC-CchhHHh-hCCcccccE
Q psy11159 28 SFKVQDMNDFEKKVK--NASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG-KVVLAKVDID-ELTDLAM-DYEVSAVPV 102 (141)
Q Consensus 28 ~~~~~~~~~~~~~i~--~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~-~~~~~~~-~~~v~~~Pt 102 (141)
.+...+.+++++.+. +.+++++|+||++||++|+.+.|.+.++++++.+ ++.|+.+|++ .+.+++. +|+|.++||
T Consensus 346 ~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~PT 425 (457)
T PLN02309 346 NVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPT 425 (457)
T ss_pred CcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceeeE
Confidence 444458889998774 5689999999999999999999999999999875 4999999999 7778886 699999999
Q ss_pred EEEEeCCe-EEEEEe-cCCCHHHHHHHHHHH
Q psy11159 103 LIAMKNGK-ELDRLI-GLQDIDKLKSFIDNL 131 (141)
Q Consensus 103 ~~~~~~g~-~~~~~~-g~~~~~~l~~~i~~~ 131 (141)
+++|++|. ....+. |..+.+.|..||+++
T Consensus 426 il~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 426 ILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred EEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 99998775 334565 467999999999875
No 59
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.78 E-value=1.9e-18 Score=104.14 Aligned_cols=96 Identities=20% Similarity=0.292 Sum_probs=77.7
Q ss_pred EeChhhHHHHHhcCCCcEEEEEec--CCCh---hhhhhhHHHHHHHHHhcCCEEEEEEeCC-----CchhHHhhCCcc--
Q psy11159 31 VQDMNDFEKKVKNASTPVIVDFFA--TWCN---PCKTLTPRLEAVIDEMKGKVVLAKVDID-----ELTDLAMDYEVS-- 98 (141)
Q Consensus 31 ~~~~~~~~~~i~~~~~~~lv~f~~--~~C~---~C~~~~~~l~~~~~~~~~~~~~~~vd~~-----~~~~~~~~~~v~-- 98 (141)
..+.++|++.+ ..++.+||.||| +||+ +|..+.|.+.+.+. .+.++.||++ ++.+++++|+|.
T Consensus 5 ~L~~~nF~~~v-~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~----~v~lakVd~~d~~~~~~~~L~~~y~I~~~ 79 (116)
T cd03007 5 DLDTVTFYKVI-PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD----DLLVAEVGIKDYGEKLNMELGERYKLDKE 79 (116)
T ss_pred ECChhhHHHHH-hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC----ceEEEEEecccccchhhHHHHHHhCCCcC
Confidence 35888999977 457889999999 8888 66666665554433 3889999994 577899999999
Q ss_pred cccEEEEEeCCe--EEEEEecC-CCHHHHHHHHHHH
Q psy11159 99 AVPVLIAMKNGK--ELDRLIGL-QDIDKLKSFIDNL 131 (141)
Q Consensus 99 ~~Pt~~~~~~g~--~~~~~~g~-~~~~~l~~~i~~~ 131 (141)
++||+.+|++|. ....+.|. .+.+.|.+||.+.
T Consensus 80 gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 80 SYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999999999885 44678886 8999999999874
No 60
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.78 E-value=5e-18 Score=97.27 Aligned_cols=80 Identities=28% Similarity=0.403 Sum_probs=72.0
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeEEEEEecCCCHHHHHHH
Q psy11159 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSF 127 (141)
Q Consensus 48 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~ 127 (141)
.+..||++||++|+.+.|.+++++++++..+.+..+|.++++++.++|++.++||+++ +|+ .+..|..+.+++.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~--~~~~G~~~~~~l~~~ 77 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD--VEFIGAPTKEELVEA 77 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE--EEEecCCCHHHHHHH
Confidence 3678999999999999999999999988779999999999999999999999999876 776 377898899999999
Q ss_pred HHHH
Q psy11159 128 IDNL 131 (141)
Q Consensus 128 i~~~ 131 (141)
|++.
T Consensus 78 l~~~ 81 (82)
T TIGR00411 78 IKKR 81 (82)
T ss_pred HHhh
Confidence 8875
No 61
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.78 E-value=1.8e-18 Score=103.27 Aligned_cols=87 Identities=21% Similarity=0.378 Sum_probs=79.4
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcc--cccEEEEEeC--CeEEEEEecCCC
Q psy11159 45 STPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVS--AVPVLIAMKN--GKELDRLIGLQD 120 (141)
Q Consensus 45 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~--~~Pt~~~~~~--g~~~~~~~g~~~ 120 (141)
++++++.|+++||++|..+.|.+.++++++++++.|+.+|+++++++++.|++. ++|+++++++ |+......|..+
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~ 91 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELT 91 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccC
Confidence 689999999999999999999999999999989999999999999999999999 9999999987 666665556668
Q ss_pred HHHHHHHHHHH
Q psy11159 121 IDKLKSFIDNL 131 (141)
Q Consensus 121 ~~~l~~~i~~~ 131 (141)
.+.+.+||++.
T Consensus 92 ~~~l~~fi~~~ 102 (103)
T cd02982 92 AESLEEFVEDF 102 (103)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 62
>KOG0190|consensus
Probab=99.76 E-value=2.8e-18 Score=124.64 Aligned_cols=105 Identities=28% Similarity=0.518 Sum_probs=91.0
Q ss_pred eeeEEeChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcC--CEEEEEEeCCCchhHHhhCCcccccEEE
Q psy11159 27 TSFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG--KVVLAKVDIDELTDLAMDYEVSAVPVLI 104 (141)
Q Consensus 27 ~~~~~~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 104 (141)
..+.+.-.++|++++.+.+|-+||.|||+||+||+++.|.++++++.+++ ++.++++|...|. .....+.++||++
T Consensus 366 ~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd--~~~~~~~~fPTI~ 443 (493)
T KOG0190|consen 366 SPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAND--VPSLKVDGFPTIL 443 (493)
T ss_pred CCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccccc--CccccccccceEE
Confidence 35677788999999999999999999999999999999999999999985 5999999999985 3445677899999
Q ss_pred EEeCCe--EEEEEecCCCHHHHHHHHHHHHh
Q psy11159 105 AMKNGK--ELDRLIGLQDIDKLKSFIDNLVE 133 (141)
Q Consensus 105 ~~~~g~--~~~~~~g~~~~~~l~~~i~~~~~ 133 (141)
+++.|. ....+.|..+.++|..+|.+...
T Consensus 444 ~~pag~k~~pv~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 444 FFPAGHKSNPVIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred EecCCCCCCCcccCCCcchHHHHhhhccCCC
Confidence 997775 45678899999999999987653
No 63
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.76 E-value=2.8e-18 Score=104.60 Aligned_cols=101 Identities=17% Similarity=0.348 Sum_probs=74.3
Q ss_pred ChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCch-hHHhhCCccc--ccEEEEE-eC
Q psy11159 33 DMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT-DLAMDYEVSA--VPVLIAM-KN 108 (141)
Q Consensus 33 ~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~--~Pt~~~~-~~ 108 (141)
+.++..+..+..+++++|.||++||++|+.+.|.+.+..........|+.++++.+. ...+.|++.+ +||++++ .+
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~ 86 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPS 86 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCC
Confidence 444555555677999999999999999999999998876654334456667776554 4567888886 9999999 59
Q ss_pred CeEEE---EEecCCCHHHHHHHHHHHHh
Q psy11159 109 GKELD---RLIGLQDIDKLKSFIDNLVE 133 (141)
Q Consensus 109 g~~~~---~~~g~~~~~~l~~~i~~~~~ 133 (141)
|+.+. ...|..+...+...|....+
T Consensus 87 Gk~~~~~~~~~~~~~~~~f~~~~~~~~~ 114 (117)
T cd02959 87 GDVHPEIINKKGNPNYKYFYSSAAQVTE 114 (117)
T ss_pred CCCchhhccCCCCccccccCCCHHHHHh
Confidence 98876 44556666666666665543
No 64
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.75 E-value=2.2e-17 Score=121.54 Aligned_cols=106 Identities=27% Similarity=0.507 Sum_probs=91.9
Q ss_pred eeEEeChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcC---CEEEEEEeCCCchhHHhhCCcccccEEE
Q psy11159 28 SFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG---KVVLAKVDIDELTDLAMDYEVSAVPVLI 104 (141)
Q Consensus 28 ~~~~~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 104 (141)
.+...+.++|.+.+.+.+++++|.||++||++|+.+.|.+.++++.+.+ ++.|+.+|++.+. +.. +++.++||++
T Consensus 347 ~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~Pt~~ 424 (462)
T TIGR01130 347 PVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFPTIK 424 (462)
T ss_pred ccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccCEEE
Confidence 4455678999998888899999999999999999999999999999987 6999999999874 444 9999999999
Q ss_pred EEeCCeEE--EEEecCCCHHHHHHHHHHHHhcc
Q psy11159 105 AMKNGKEL--DRLIGLQDIDKLKSFIDNLVEKQ 135 (141)
Q Consensus 105 ~~~~g~~~--~~~~g~~~~~~l~~~i~~~~~~~ 135 (141)
+|++|+.. ..+.|..+.+.+.+||++.....
T Consensus 425 ~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~ 457 (462)
T TIGR01130 425 FVPAGKKSEPVPYDGDRTLEDFSKFIAKHATFP 457 (462)
T ss_pred EEeCCCCcCceEecCcCCHHHHHHHHHhcCCCC
Confidence 99888653 57788889999999999876543
No 65
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.73 E-value=7.3e-17 Score=108.18 Aligned_cols=89 Identities=26% Similarity=0.371 Sum_probs=77.1
Q ss_pred CCcEEEEEec---CCChhhhhhhHHHHHHHHHhcC-CEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeEEE-EEecCC
Q psy11159 45 STPVIVDFFA---TWCNPCKTLTPRLEAVIDEMKG-KVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELD-RLIGLQ 119 (141)
Q Consensus 45 ~~~~lv~f~~---~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~-~~~g~~ 119 (141)
+...++.|++ +||++|+.+.|.++++++++++ .+.++.+|.+++++++++|+|.++||+++|++|+.+. ++.|..
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~ 98 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIP 98 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecC
Confidence 3455777888 9999999999999999999863 2556777777999999999999999999999999874 899999
Q ss_pred CHHHHHHHHHHHHh
Q psy11159 120 DIDKLKSFIDNLVE 133 (141)
Q Consensus 120 ~~~~l~~~i~~~~~ 133 (141)
+.+++.++|+.+++
T Consensus 99 ~~~~l~~~i~~~~~ 112 (215)
T TIGR02187 99 AGYEFAALIEDIVR 112 (215)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998864
No 66
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.72 E-value=1.7e-17 Score=100.45 Aligned_cols=86 Identities=28% Similarity=0.522 Sum_probs=66.3
Q ss_pred cCCCcEEEEEecCCChhhhhhhHHHHHH---HHHhcCCEEEEEEeCCCc--------------------hhHHhhCCccc
Q psy11159 43 NASTPVIVDFFATWCNPCKTLTPRLEAV---IDEMKGKVVLAKVDIDEL--------------------TDLAMDYEVSA 99 (141)
Q Consensus 43 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~---~~~~~~~~~~~~vd~~~~--------------------~~~~~~~~v~~ 99 (141)
.++++++++|+++||++|+.+.+.+.+. ...+.+++.++.++++.. .++.+.|+|.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 4689999999999999999999998854 444444678888887643 35889999999
Q ss_pred ccEEEEE-eCCeEEEEEecCCCHHHHHHHH
Q psy11159 100 VPVLIAM-KNGKELDRLIGLQDIDKLKSFI 128 (141)
Q Consensus 100 ~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i 128 (141)
+||++++ .+|+.+.+..|..+.++|.++|
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 9999999 4899999999999999998875
No 67
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.72 E-value=1.1e-16 Score=120.39 Aligned_cols=104 Identities=21% Similarity=0.527 Sum_probs=86.7
Q ss_pred eeEEeChhhHHHHHhc---CCCcEEEEEecCCChhhhhhhHHH---HHHHHHhcCCEEEEEEeCCCc----hhHHhhCCc
Q psy11159 28 SFKVQDMNDFEKKVKN---ASTPVIVDFFATWCNPCKTLTPRL---EAVIDEMKGKVVLAKVDIDEL----TDLAMDYEV 97 (141)
Q Consensus 28 ~~~~~~~~~~~~~i~~---~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vd~~~~----~~~~~~~~v 97 (141)
..++.+.+++++.+.+ ++|+++|+||++||++|+.+++.. .++.+.++ ++.++++|++++ .++.++|++
T Consensus 454 ~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v 532 (571)
T PRK00293 454 FQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNV 532 (571)
T ss_pred ceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCC
Confidence 4556678888877643 479999999999999999998875 67777776 689999999754 578899999
Q ss_pred ccccEEEEEe-CCeEE--EEEecCCCHHHHHHHHHHHH
Q psy11159 98 SAVPVLIAMK-NGKEL--DRLIGLQDIDKLKSFIDNLV 132 (141)
Q Consensus 98 ~~~Pt~~~~~-~g~~~--~~~~g~~~~~~l~~~i~~~~ 132 (141)
.++||+++|+ +|+++ .+..|..+.+++.+++++..
T Consensus 533 ~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 533 LGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred CCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 9999999995 78874 68889999999999998753
No 68
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.72 E-value=2e-16 Score=96.95 Aligned_cols=99 Identities=18% Similarity=0.233 Sum_probs=75.4
Q ss_pred hhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHH---HHHHHHhcCCEEEEEEeCCCchhHHh--------hCCcccccE
Q psy11159 34 MNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRL---EAVIDEMKGKVVLAKVDIDELTDLAM--------DYEVSAVPV 102 (141)
Q Consensus 34 ~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vd~~~~~~~~~--------~~~v~~~Pt 102 (141)
.+.+.+ .++.+|+++|+|+++||+.|+.+.+.. .++.+.+..++.++.+|.++++++.+ .|++.++|+
T Consensus 5 ~eal~~-Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt 83 (124)
T cd02955 5 EEAFEK-ARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPL 83 (124)
T ss_pred HHHHHH-HHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCE
Confidence 344444 467799999999999999999998743 46777665579999999999887655 358999999
Q ss_pred EEEE-eCCeEEEEEecC-----CCHHHHHHHHHHHHh
Q psy11159 103 LIAM-KNGKELDRLIGL-----QDIDKLKSFIDNLVE 133 (141)
Q Consensus 103 ~~~~-~~g~~~~~~~g~-----~~~~~l~~~i~~~~~ 133 (141)
++++ .+|+++....+. .+...+..+++....
T Consensus 84 ~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (124)
T cd02955 84 NVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIRE 120 (124)
T ss_pred EEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHHH
Confidence 9999 789988777665 333466666666543
No 69
>KOG0912|consensus
Probab=99.72 E-value=3.5e-17 Score=111.39 Aligned_cols=100 Identities=28% Similarity=0.578 Sum_probs=87.9
Q ss_pred hhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHh----c-CCEEEEEEeCCCchhHHhhCCcccccEEEEEeC
Q psy11159 34 MNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEM----K-GKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKN 108 (141)
Q Consensus 34 ~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~----~-~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 108 (141)
.+++...+ ++++.++|.|||+||+.++.++|.+.+.++.+ + +++.+..|||+++..++.+|.|..+||+-+|.+
T Consensus 3 ~~N~~~il-~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrn 81 (375)
T KOG0912|consen 3 SENIDSIL-DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRN 81 (375)
T ss_pred cccHHHhh-ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeec
Confidence 45566654 56899999999999999999999998887655 4 579999999999999999999999999999999
Q ss_pred CeEEE-EEecCCCHHHHHHHHHHHHhc
Q psy11159 109 GKELD-RLIGLQDIDKLKSFIDNLVEK 134 (141)
Q Consensus 109 g~~~~-~~~g~~~~~~l~~~i~~~~~~ 134 (141)
|..+. .|.|..+.+.+.++|++.+..
T Consensus 82 G~~~~rEYRg~RsVeaL~efi~kq~s~ 108 (375)
T KOG0912|consen 82 GEMMKREYRGQRSVEALIEFIEKQLSD 108 (375)
T ss_pred cchhhhhhccchhHHHHHHHHHHHhcc
Confidence 98877 788999999999999987653
No 70
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.71 E-value=2.2e-16 Score=103.61 Aligned_cols=92 Identities=24% Similarity=0.350 Sum_probs=75.8
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCch-----------------------hHHhhCCcccc
Q psy11159 44 ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT-----------------------DLAMDYEVSAV 100 (141)
Q Consensus 44 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~-----------------------~~~~~~~v~~~ 100 (141)
.+++++|+||++||++|+...|.+.++.++ ++.++.++.++++ .+.+.|++.++
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~ 143 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA 143 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcC
Confidence 589999999999999999999999998653 5777888764432 24457899999
Q ss_pred cEEEEE-eCCeEEEEEecCCCHHHHHHHHHHHHhcccCC
Q psy11159 101 PVLIAM-KNGKELDRLIGLQDIDKLKSFIDNLVEKQSAV 138 (141)
Q Consensus 101 Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~ 138 (141)
|+.+++ ++|+++.++.|..+.++++++|+.++++..+.
T Consensus 144 P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~~~~~ 182 (185)
T PRK15412 144 PETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEKYSKE 182 (185)
T ss_pred CeEEEECCCceEEEEEecCCCHHHHHHHHHHHHHHHHhh
Confidence 966666 79999999999999999999999999776543
No 71
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.70 E-value=4.9e-16 Score=104.19 Aligned_cols=85 Identities=22% Similarity=0.326 Sum_probs=73.2
Q ss_pred hcCCCcE-EEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeEEEEEecCCC
Q psy11159 42 KNASTPV-IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQD 120 (141)
Q Consensus 42 ~~~~~~~-lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~ 120 (141)
.+.++++ ++.||++||++|..+.+.+++++...+ ++.+..+|.+++++++.+|+|.++||++++++|+. +.|..+
T Consensus 129 ~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~-~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~---~~G~~~ 204 (215)
T TIGR02187 129 QSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAND-KILGEMIEANENPDLAEKYGVMSVPKIVINKGVEE---FVGAYP 204 (215)
T ss_pred HhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC-ceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCEE---EECCCC
Confidence 3445555 444999999999999999999998864 79999999999999999999999999999987753 788889
Q ss_pred HHHHHHHHHH
Q psy11159 121 IDKLKSFIDN 130 (141)
Q Consensus 121 ~~~l~~~i~~ 130 (141)
.+++.++|.+
T Consensus 205 ~~~l~~~l~~ 214 (215)
T TIGR02187 205 EEQFLEYILS 214 (215)
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 72
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.69 E-value=7.1e-16 Score=97.87 Aligned_cols=87 Identities=16% Similarity=0.316 Sum_probs=66.7
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCc------------hhHH-hhC---CcccccEEEEE-
Q psy11159 44 ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDEL------------TDLA-MDY---EVSAVPVLIAM- 106 (141)
Q Consensus 44 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~------------~~~~-~~~---~v~~~Pt~~~~- 106 (141)
.+++.+|+||++||++|+.+.|.+.++.++++ +.++.++.|.. .+.. ..| ++.++||.+++
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID 126 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVN 126 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEe
Confidence 36678999999999999999999999999985 45555555432 2232 345 78999988888
Q ss_pred eCCeE-EEEEecCCCHHHHHHHHHHHH
Q psy11159 107 KNGKE-LDRLIGLQDIDKLKSFIDNLV 132 (141)
Q Consensus 107 ~~g~~-~~~~~g~~~~~~l~~~i~~~~ 132 (141)
++|+. .....|..+.+++.+.|.+++
T Consensus 127 ~~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 127 VNTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred CCCCEEEEEeecccCHHHHHHHHHHhC
Confidence 56665 557889999999999888753
No 73
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.68 E-value=9.3e-16 Score=113.25 Aligned_cols=88 Identities=23% Similarity=0.363 Sum_probs=75.1
Q ss_pred cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhc-CCEEEEEE----------------------------eCCCchhHHh
Q psy11159 43 NASTPVIVDFFATWCNPCKTLTPRLEAVIDEMK-GKVVLAKV----------------------------DIDELTDLAM 93 (141)
Q Consensus 43 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~v----------------------------d~~~~~~~~~ 93 (141)
+.++++||+|||+||++|+.+.|.|.++.++++ +++.++.| +.|.+..+.+
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak 133 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQ 133 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHH
Confidence 468999999999999999999999999999886 34665544 3345567889
Q ss_pred hCCcccccEEEEE-eCCeEEEEEecCCCHHHHHHHHHH
Q psy11159 94 DYEVSAVPVLIAM-KNGKELDRLIGLQDIDKLKSFIDN 130 (141)
Q Consensus 94 ~~~v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~ 130 (141)
.|+|.++||++++ ++|+++.+..|..+.++|.++|+.
T Consensus 134 ~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 134 SLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN 171 (521)
T ss_pred HcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 9999999988666 799999999999999999999984
No 74
>PHA02125 thioredoxin-like protein
Probab=99.67 E-value=1.2e-15 Score=86.02 Aligned_cols=71 Identities=34% Similarity=0.615 Sum_probs=58.6
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeEEEEEecC-CCHHHHHHH
Q psy11159 49 IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIGL-QDIDKLKSF 127 (141)
Q Consensus 49 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~l~~~ 127 (141)
+++||++||++|+.+.|.++++. +.++.+|.+++.+++++|+|.++||++ +|+.+.+..|. .+..+|++.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~~~ 72 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELKEK 72 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHHHH
Confidence 68999999999999999997652 467899999999999999999999987 68888888886 233555554
Q ss_pred H
Q psy11159 128 I 128 (141)
Q Consensus 128 i 128 (141)
+
T Consensus 73 ~ 73 (75)
T PHA02125 73 L 73 (75)
T ss_pred h
Confidence 3
No 75
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.67 E-value=1.4e-15 Score=98.78 Aligned_cols=87 Identities=24% Similarity=0.438 Sum_probs=71.4
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCC-----------------------CchhHHhhCCcccc
Q psy11159 44 ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDID-----------------------ELTDLAMDYEVSAV 100 (141)
Q Consensus 44 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~-----------------------~~~~~~~~~~v~~~ 100 (141)
.+++++++||++||++|+.+.|.++++.++ ++.++.++.+ .+.++.+.|++.++
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~ 138 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGA 138 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeC
Confidence 578999999999999999999999888764 4566666542 23356678899999
Q ss_pred cEEEEE-eCCeEEEEEecCCCHHHHHHHHHHHHh
Q psy11159 101 PVLIAM-KNGKELDRLIGLQDIDKLKSFIDNLVE 133 (141)
Q Consensus 101 Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~~~~ 133 (141)
|+.+++ ++|+++.++.|..+.+++.+++.+++.
T Consensus 139 P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 139 PETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred CeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 965555 799999999999999999999999874
No 76
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.67 E-value=1.2e-15 Score=86.14 Aligned_cols=72 Identities=17% Similarity=0.403 Sum_probs=59.4
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeEEEEEecC-CCHHHHHHHH
Q psy11159 50 VDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIGL-QDIDKLKSFI 128 (141)
Q Consensus 50 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~l~~~i 128 (141)
|.||++||++|+.+.|.+++++++++..+.++.+| +.+...+|++.++|++++ +|+.+ ..|. .+.+++.+++
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~l 75 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEIL 75 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHHh
Confidence 78999999999999999999999998778887777 234477899999999888 88877 5564 4557777765
No 77
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.67 E-value=2e-15 Score=104.09 Aligned_cols=89 Identities=20% Similarity=0.272 Sum_probs=73.7
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCC-----------chhHHhhCCcccccEEEEEeC-CeE
Q psy11159 44 ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDE-----------LTDLAMDYEVSAVPVLIAMKN-GKE 111 (141)
Q Consensus 44 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~-----------~~~~~~~~~v~~~Pt~~~~~~-g~~ 111 (141)
.++++||+||++||++|+.+.|.+.+++++++ +.++.|++|. +..+.++|||.++|+++++++ |+.
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~ 242 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQ 242 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCE
Confidence 37899999999999999999999999999985 5666666654 346889999999999999965 555
Q ss_pred EE-EEecCCCHHHHHHHHHHHHhc
Q psy11159 112 LD-RLIGLQDIDKLKSFIDNLVEK 134 (141)
Q Consensus 112 ~~-~~~g~~~~~~l~~~i~~~~~~ 134 (141)
+. ...|..+.++|.+.|......
T Consensus 243 v~~v~~G~~s~~eL~~~i~~~a~~ 266 (271)
T TIGR02740 243 FTPIGFGVMSADELVDRILLAAHP 266 (271)
T ss_pred EEEEEeCCCCHHHHHHHHHHHhcc
Confidence 44 556999999999999887653
No 78
>KOG0191|consensus
Probab=99.67 E-value=7.3e-16 Score=111.38 Aligned_cols=104 Identities=29% Similarity=0.578 Sum_probs=92.1
Q ss_pred hhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeEEE
Q psy11159 34 MNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELD 113 (141)
Q Consensus 34 ~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 113 (141)
...+...+...+++.+|+||++||++|+.+.|.+.+++..+.+.+.+..||++++.++|++|+|.++||+.+|..|....
T Consensus 36 ~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~ 115 (383)
T KOG0191|consen 36 LDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPI 115 (383)
T ss_pred ccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCcee
Confidence 45555556677899999999999999999999999999999988999999999999999999999999999998886677
Q ss_pred EEecCCCHHHHHHHHHHHHhcccC
Q psy11159 114 RLIGLQDIDKLKSFIDNLVEKQSA 137 (141)
Q Consensus 114 ~~~g~~~~~~l~~~i~~~~~~~~~ 137 (141)
.+.|..+.+.+..++...++....
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~ 139 (383)
T KOG0191|consen 116 DYSGPRNAESLAEFLIKELEPSVK 139 (383)
T ss_pred eccCcccHHHHHHHHHHhhccccc
Confidence 788888999999999888765443
No 79
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.67 E-value=6.3e-15 Score=90.53 Aligned_cols=102 Identities=14% Similarity=0.195 Sum_probs=86.1
Q ss_pred hhhHHHHHhcCCCcEEEEEecC--CChhhhhhhHHHHHHHHHhcC-CEEEEEEeCCCchhHHhhCCcccccEEEEEeCCe
Q psy11159 34 MNDFEKKVKNASTPVIVDFFAT--WCNPCKTLTPRLEAVIDEMKG-KVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGK 110 (141)
Q Consensus 34 ~~~~~~~i~~~~~~~lv~f~~~--~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 110 (141)
..++..++.. +...++.|.++ .++.+....-.|.+++++|++ ++.++++|+|++++++.+|||.++||+++|++|+
T Consensus 24 ~~~~~~~~~~-~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdGk 102 (132)
T PRK11509 24 ESRLDDWLTQ-APDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGN 102 (132)
T ss_pred cccHHHHHhC-CCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEECCE
Confidence 3555555533 34455555543 578899999999999999984 5999999999999999999999999999999999
Q ss_pred EEEEEecCCCHHHHHHHHHHHHhccc
Q psy11159 111 ELDRLIGLQDIDKLKSFIDNLVEKQS 136 (141)
Q Consensus 111 ~~~~~~g~~~~~~l~~~i~~~~~~~~ 136 (141)
.+.+..|..+.+++.++|+++++...
T Consensus 103 ~v~~i~G~~~k~~l~~~I~~~L~~~~ 128 (132)
T PRK11509 103 YRGVLNGIHPWAELINLMRGLVEPQQ 128 (132)
T ss_pred EEEEEeCcCCHHHHHHHHHHHhcCcC
Confidence 99999999999999999999987644
No 80
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.65 E-value=1e-14 Score=88.61 Aligned_cols=102 Identities=20% Similarity=0.249 Sum_probs=84.1
Q ss_pred ChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHH---HHHHHHhcCCEEEEEEeCC--CchhHHhhCCcccccEEEEE-
Q psy11159 33 DMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRL---EAVIDEMKGKVVLAKVDID--ELTDLAMDYEVSAVPVLIAM- 106 (141)
Q Consensus 33 ~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~- 106 (141)
+.++..+..+..+|+++|+|+++||++|+.+.... .++.+.+..+..++.+|.+ +...++..|++.++|+++++
T Consensus 5 s~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~ 84 (114)
T cd02958 5 SFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIID 84 (114)
T ss_pred CHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEe
Confidence 45556666677799999999999999999997643 5566666657888888886 45578999999999999999
Q ss_pred e-CCeEEEEEecCCCHHHHHHHHHHHHhc
Q psy11159 107 K-NGKELDRLIGLQDIDKLKSFIDNLVEK 134 (141)
Q Consensus 107 ~-~g~~~~~~~g~~~~~~l~~~i~~~~~~ 134 (141)
. +|+.+.+..|..+.+++...|++.+..
T Consensus 85 ~~~g~~l~~~~G~~~~~~f~~~L~~~~~~ 113 (114)
T cd02958 85 PRTGEVLKVWSGNITPEDLLSQLIEFLEE 113 (114)
T ss_pred CccCcEeEEEcCCCCHHHHHHHHHHHHhc
Confidence 4 799999999999999999999887653
No 81
>KOG4277|consensus
Probab=99.64 E-value=9e-16 Score=104.80 Aligned_cols=86 Identities=24% Similarity=0.512 Sum_probs=75.2
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHhcC---CEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeEEEEEecCCCH
Q psy11159 45 STPVIVDFFATWCNPCKTLTPRLEAVIDEMKG---KVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDI 121 (141)
Q Consensus 45 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~ 121 (141)
+..++|.||||||++|+++.|.|.++...+++ .+.+.++|+...+.++.+++|+++||+.++++|..+ .+.|....
T Consensus 43 ddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~-dYRG~R~K 121 (468)
T KOG4277|consen 43 DDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAI-DYRGGREK 121 (468)
T ss_pred CCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeee-ecCCCccH
Confidence 67899999999999999999999999877663 489999999999999999999999999999877554 46777788
Q ss_pred HHHHHHHHHH
Q psy11159 122 DKLKSFIDNL 131 (141)
Q Consensus 122 ~~l~~~i~~~ 131 (141)
+.+..|-.+.
T Consensus 122 d~iieFAhR~ 131 (468)
T KOG4277|consen 122 DAIIEFAHRC 131 (468)
T ss_pred HHHHHHHHhc
Confidence 8888887654
No 82
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.63 E-value=3.9e-15 Score=92.02 Aligned_cols=79 Identities=22% Similarity=0.440 Sum_probs=64.8
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeC-----------------------CCchhHHhhCCcccc
Q psy11159 44 ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDI-----------------------DELTDLAMDYEVSAV 100 (141)
Q Consensus 44 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~-----------------------~~~~~~~~~~~v~~~ 100 (141)
.+++++|+||++||+.|+.+.|.+.++.+++ ++.++.++. |.+..+++.|++.++
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~--~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~ 101 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQG--RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGV 101 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc--CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCC
Confidence 3789999999999999999999999998876 366666653 345567888999999
Q ss_pred cEEEEE-eCCeEEEEEecCCCHHHH
Q psy11159 101 PVLIAM-KNGKELDRLIGLQDIDKL 124 (141)
Q Consensus 101 Pt~~~~-~~g~~~~~~~g~~~~~~l 124 (141)
|+.+++ ++|+++.++.|..+.+.+
T Consensus 102 P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 102 PETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CeEEEECCCceEEEEEeccCChHhc
Confidence 965555 799999999999887654
No 83
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.63 E-value=4.5e-15 Score=93.31 Aligned_cols=71 Identities=18% Similarity=0.430 Sum_probs=57.8
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhcC--------CEEEEEEeCCCch-------------------------h
Q psy11159 44 ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG--------KVVLAKVDIDELT-------------------------D 90 (141)
Q Consensus 44 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--------~~~~~~vd~~~~~-------------------------~ 90 (141)
.+++++|+|||+||++|+.+.|.|.++.+++.+ ++.++.|+.+++. .
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 479999999999999999999999998765542 4888888876422 4
Q ss_pred HHhhCCcccccEEEEE-eCCeEEEE
Q psy11159 91 LAMDYEVSAVPVLIAM-KNGKELDR 114 (141)
Q Consensus 91 ~~~~~~v~~~Pt~~~~-~~g~~~~~ 114 (141)
+.+.|++.++|+.+++ ++|+++.+
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEee
Confidence 6778899999998888 57777764
No 84
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.62 E-value=1.8e-14 Score=93.43 Aligned_cols=88 Identities=24% Similarity=0.574 Sum_probs=75.7
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhcC-CEEEEEEeCCC----------------------chhHHhhCCcccc
Q psy11159 44 ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG-KVVLAKVDIDE----------------------LTDLAMDYEVSAV 100 (141)
Q Consensus 44 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~----------------------~~~~~~~~~v~~~ 100 (141)
.+++++|+||++||+.|+...+.+.++.+++++ ++.++.++.+. +..+.+.|++.++
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 478999999999999999999999999999875 38888888653 3467899999999
Q ss_pred cEEEEE-eCCeEEEEEecCCCHHHHHHHHHHH
Q psy11159 101 PVLIAM-KNGKELDRLIGLQDIDKLKSFIDNL 131 (141)
Q Consensus 101 Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~~ 131 (141)
|+++++ ++|+.+....|..+.+++.++++++
T Consensus 140 P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 140 PTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 988877 6888888889999999999988764
No 85
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.62 E-value=6e-15 Score=86.72 Aligned_cols=66 Identities=33% Similarity=0.762 Sum_probs=54.8
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHhc--CCEEEEEEeCCCch-------------------------hHHhhCCc
Q psy11159 45 STPVIVDFFATWCNPCKTLTPRLEAVIDEMK--GKVVLAKVDIDELT-------------------------DLAMDYEV 97 (141)
Q Consensus 45 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~~vd~~~~~-------------------------~~~~~~~v 97 (141)
||+++++||++||++|+...|.+.++.++++ +++.++.|..|+.. .+.+.|++
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 6899999999999999999999999999999 67999999877532 47789999
Q ss_pred ccccEEEEE-eCCe
Q psy11159 98 SAVPVLIAM-KNGK 110 (141)
Q Consensus 98 ~~~Pt~~~~-~~g~ 110 (141)
.++|+++++ ++|+
T Consensus 81 ~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 81 NGIPTLVLLDPDGK 94 (95)
T ss_dssp TSSSEEEEEETTSB
T ss_pred CcCCEEEEECCCCC
Confidence 999999988 4554
No 86
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.61 E-value=7.6e-15 Score=80.92 Aligned_cols=62 Identities=26% Similarity=0.390 Sum_probs=54.8
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeEE
Q psy11159 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKEL 112 (141)
Q Consensus 48 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 112 (141)
.++.|+++||++|..+.+.+++++...+ ++.+..+|.++++++.+++++.++|++++ +|+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~-~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~~~ 63 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP-NISAEMIDAAEFPDLADEYGVMSVPAIVI--NGKVE 63 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC-ceEEEEEEcccCHhHHHHcCCcccCEEEE--CCEEE
Confidence 4778999999999999999999987764 69999999999999999999999999866 66544
No 87
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.59 E-value=3.1e-14 Score=82.58 Aligned_cols=75 Identities=13% Similarity=0.243 Sum_probs=64.2
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeEEEEEecCCCHHHH
Q psy11159 45 STPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKL 124 (141)
Q Consensus 45 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l 124 (141)
+...+..|+++||++|....+.++++++.++ ++.+..+|.++.++++++|+|.++|++++ +|+.+.. |..+.+++
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~~--G~~~~~e~ 86 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFGF--GRMTLEEI 86 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEEe--CCCCHHHH
Confidence 3345888999999999999999999999887 69999999999999999999999999865 8887664 65565554
No 88
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.59 E-value=1.9e-14 Score=114.70 Aligned_cols=90 Identities=24% Similarity=0.387 Sum_probs=78.0
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCC-EEEEEEeC---------------------------CCchhHHhhC
Q psy11159 44 ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGK-VVLAKVDI---------------------------DELTDLAMDY 95 (141)
Q Consensus 44 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~vd~---------------------------~~~~~~~~~~ 95 (141)
.+|++||+|||+||++|+...|.|+++.++++++ +.++.+.. |.+..+.+.|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 4899999999999999999999999999999754 77776631 2234577899
Q ss_pred CcccccEEEEE-eCCeEEEEEecCCCHHHHHHHHHHHHh
Q psy11159 96 EVSAVPVLIAM-KNGKELDRLIGLQDIDKLKSFIDNLVE 133 (141)
Q Consensus 96 ~v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~~~~ 133 (141)
+|.++|+++++ ++|+++.+..|....+++.++|+..+.
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 99999999999 799999999999999999999999876
No 89
>KOG1731|consensus
Probab=99.58 E-value=1.3e-15 Score=111.23 Aligned_cols=107 Identities=19% Similarity=0.404 Sum_probs=85.1
Q ss_pred eeeEEeChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcC---CEEEEEEeC--CCchhHHhhCCccccc
Q psy11159 27 TSFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG---KVVLAKVDI--DELTDLAMDYEVSAVP 101 (141)
Q Consensus 27 ~~~~~~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~--~~~~~~~~~~~v~~~P 101 (141)
+.+...+.++|...+..+.+..+|.||++||++|+.+.|.+++++++..+ -+.++.||| ++|..+|++|+|.++|
T Consensus 39 D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~P 118 (606)
T KOG1731|consen 39 DPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYP 118 (606)
T ss_pred CCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCc
Confidence 56666799999999988888899999999999999999999999988764 377888888 4677899999999999
Q ss_pred EEEEEeCCeEE----EEEecCCCHHHHHHHHHHHHh
Q psy11159 102 VLIAMKNGKEL----DRLIGLQDIDKLKSFIDNLVE 133 (141)
Q Consensus 102 t~~~~~~g~~~----~~~~g~~~~~~l~~~i~~~~~ 133 (141)
++.+|+.+... ..+.|.....++...+.+.+.
T Consensus 119 tlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la 154 (606)
T KOG1731|consen 119 TLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLA 154 (606)
T ss_pred eeeecCCccccCcCCCcccCCcchhhHHHHHHHHHH
Confidence 99999433211 234455556677776666654
No 90
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.57 E-value=2.4e-14 Score=88.96 Aligned_cols=71 Identities=24% Similarity=0.583 Sum_probs=57.9
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhcC---CEEEEEEeCCCc------------------------hhHHhhCC
Q psy11159 44 ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG---KVVLAKVDIDEL------------------------TDLAMDYE 96 (141)
Q Consensus 44 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~~~~------------------------~~~~~~~~ 96 (141)
.+++++|+||++||+.|+...|.+.++.+++.+ ++.++.++.|.+ ..+.+.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 478999999999999999999999999887753 477777776643 34678899
Q ss_pred cccccEEEEE-eCCeEEEE
Q psy11159 97 VSAVPVLIAM-KNGKELDR 114 (141)
Q Consensus 97 v~~~Pt~~~~-~~g~~~~~ 114 (141)
+.++|+++++ ++|+++.+
T Consensus 97 v~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 97 IEGIPTLIILDADGEVVTT 115 (131)
T ss_pred CCCCCEEEEECCCCCEEcc
Confidence 9999999999 48876654
No 91
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.57 E-value=2.4e-14 Score=89.11 Aligned_cols=71 Identities=25% Similarity=0.570 Sum_probs=57.5
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhcC---CEEEEEEeCCCch-------------------------hHHhhC
Q psy11159 44 ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG---KVVLAKVDIDELT-------------------------DLAMDY 95 (141)
Q Consensus 44 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~~~~~-------------------------~~~~~~ 95 (141)
.+++++|.||++||++|+...|.+.++.+++.+ ++.++.++.+..+ .+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 479999999999999999999999999888764 4777777766532 356679
Q ss_pred CcccccEEEEE-eCCeEEEE
Q psy11159 96 EVSAVPVLIAM-KNGKELDR 114 (141)
Q Consensus 96 ~v~~~Pt~~~~-~~g~~~~~ 114 (141)
++.++|+++++ ++|+++.+
T Consensus 96 ~v~~iPt~~lid~~G~iv~~ 115 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVVTT 115 (132)
T ss_pred CCCCCCEEEEECCCCCEEch
Confidence 99999999988 47766654
No 92
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.56 E-value=7.1e-14 Score=85.81 Aligned_cols=82 Identities=23% Similarity=0.419 Sum_probs=65.8
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeC---------------------CCchhHHhhCCcccccE
Q psy11159 44 ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDI---------------------DELTDLAMDYEVSAVPV 102 (141)
Q Consensus 44 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~---------------------~~~~~~~~~~~v~~~Pt 102 (141)
.++++++.||++||++|+.+.|.+.++.+++. +..+.+|. +.+..+++.|++.++|+
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~ 96 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP--VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPA 96 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhCC--EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccE
Confidence 46899999999999999999999999987753 33333332 34457899999999999
Q ss_pred EEEEeCCeEEEEEecCCCHHHHHHH
Q psy11159 103 LIAMKNGKELDRLIGLQDIDKLKSF 127 (141)
Q Consensus 103 ~~~~~~g~~~~~~~g~~~~~~l~~~ 127 (141)
++++.+|++..+..|..+.+++.+.
T Consensus 97 ~~vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 97 IVIVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred EEEEcCCCeEEEEeccCCHHHHHhh
Confidence 9999656688899999999888654
No 93
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.56 E-value=1.4e-13 Score=89.00 Aligned_cols=85 Identities=18% Similarity=0.270 Sum_probs=68.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCc-------------hhHHhhCCc--ccccEEEEE-eCCeEE
Q psy11159 49 IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDEL-------------TDLAMDYEV--SAVPVLIAM-KNGKEL 112 (141)
Q Consensus 49 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~-------------~~~~~~~~v--~~~Pt~~~~-~~g~~~ 112 (141)
+|.||++||++|+++.|.+.++.++++ +.++.++.|.. ..+.+.|++ .++|+.+++ ++|+..
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~ 150 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA 150 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence 788999999999999999999999985 66666665432 235668885 699987777 788775
Q ss_pred -EEEecCCCHHHHHHHHHHHHhcc
Q psy11159 113 -DRLIGLQDIDKLKSFIDNLVEKQ 135 (141)
Q Consensus 113 -~~~~g~~~~~~l~~~i~~~~~~~ 135 (141)
..+.|..+.+++++.|.+++.-.
T Consensus 151 ~~~~~G~~~~~~L~~~I~~ll~~~ 174 (181)
T PRK13728 151 LPLLQGATDAAGFMARMDTVLQMY 174 (181)
T ss_pred EEEEECCCCHHHHHHHHHHHHhhh
Confidence 47899999999999999988653
No 94
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.54 E-value=4.5e-14 Score=86.69 Aligned_cols=85 Identities=11% Similarity=0.114 Sum_probs=61.3
Q ss_pred ChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHH---HHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEE-eC
Q psy11159 33 DMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRL---EAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAM-KN 108 (141)
Q Consensus 33 ~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~ 108 (141)
+.++..+..+..+|+++|+|+++||++|+.+...+ .++.+....++..+.++.+....-....+ .++||++|+ .+
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~ 89 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPS 89 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeEEEECCC
Confidence 56666666677899999999999999999998865 45555554467766777653321111233 689999999 78
Q ss_pred CeEEEEEecC
Q psy11159 109 GKELDRLIGL 118 (141)
Q Consensus 109 g~~~~~~~g~ 118 (141)
|+++.+..|.
T Consensus 90 g~vi~~i~Gy 99 (130)
T cd02960 90 LTVRADITGR 99 (130)
T ss_pred CCCccccccc
Confidence 8888777765
No 95
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.51 E-value=2.2e-13 Score=82.00 Aligned_cols=73 Identities=34% Similarity=0.718 Sum_probs=64.6
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHhc-CCEEEEEEeCCCc-----------------------hhHHhhCCcccc
Q psy11159 45 STPVIVDFFATWCNPCKTLTPRLEAVIDEMK-GKVVLAKVDIDEL-----------------------TDLAMDYEVSAV 100 (141)
Q Consensus 45 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~vd~~~~-----------------------~~~~~~~~v~~~ 100 (141)
++++++.||++||+.|....+.+.++.+++. .++.++.++.+.+ ..+.+.|++.++
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGL 98 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCcc
Confidence 7899999999999999999999999999985 3699999999885 678899999999
Q ss_pred cEEEEE-eCCeEEEEEec
Q psy11159 101 PVLIAM-KNGKELDRLIG 117 (141)
Q Consensus 101 Pt~~~~-~~g~~~~~~~g 117 (141)
|+++++ ++|+.+.++.|
T Consensus 99 P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 99 PTTFLIDRDGRIRARHVG 116 (116)
T ss_pred ceEEEECCCCcEEEEecC
Confidence 998888 68888877765
No 96
>KOG0191|consensus
Probab=99.51 E-value=1.6e-13 Score=99.32 Aligned_cols=106 Identities=30% Similarity=0.548 Sum_probs=94.8
Q ss_pred eEEeChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhc--CCEEEEEEeCCCchhHHhhCCcccccEEEEE
Q psy11159 29 FKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMK--GKVVLAKVDIDELTDLAMDYEVSAVPVLIAM 106 (141)
Q Consensus 29 ~~~~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 106 (141)
+...+..++...+.+.+..++|.||+|||++|+.+.|.+.+++..+. ..+.+..+|++.+..++.+++|.++||+.+|
T Consensus 146 v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f 225 (383)
T KOG0191|consen 146 VFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLF 225 (383)
T ss_pred eEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEe
Confidence 55557788888888888999999999999999999999999999885 5799999999999999999999999999999
Q ss_pred eCCeE-EEEEecCCCHHHHHHHHHHHHhc
Q psy11159 107 KNGKE-LDRLIGLQDIDKLKSFIDNLVEK 134 (141)
Q Consensus 107 ~~g~~-~~~~~g~~~~~~l~~~i~~~~~~ 134 (141)
++|.. ...+.|..+.+.+..|++.....
T Consensus 226 ~~~~~~~~~~~~~R~~~~i~~~v~~~~~~ 254 (383)
T KOG0191|consen 226 PPGEEDIYYYSGLRDSDSIVSFVEKKERR 254 (383)
T ss_pred cCCCcccccccccccHHHHHHHHHhhcCC
Confidence 88888 77788888999999999988765
No 97
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.49 E-value=5.7e-13 Score=84.18 Aligned_cols=83 Identities=30% Similarity=0.591 Sum_probs=66.7
Q ss_pred CCCcEEEEEecC-CChhhhhhhHHHHHHHHHhcC-CEEEEEEeCCC---------------------chhHHhhCCcc--
Q psy11159 44 ASTPVIVDFFAT-WCNPCKTLTPRLEAVIDEMKG-KVVLAKVDIDE---------------------LTDLAMDYEVS-- 98 (141)
Q Consensus 44 ~~~~~lv~f~~~-~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~---------------------~~~~~~~~~v~-- 98 (141)
.+++++|.||++ ||++|+...|.+.++.+.+++ ++.++.+..+. +..+.+.|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 488999999999 999999999999999888664 47777776543 33688899988
Q ss_pred -------cccEEEEE-eCCeEEEEEecCCC--HHHHHH
Q psy11159 99 -------AVPVLIAM-KNGKELDRLIGLQD--IDKLKS 126 (141)
Q Consensus 99 -------~~Pt~~~~-~~g~~~~~~~g~~~--~~~l~~ 126 (141)
++|+++++ ++|+++....|..+ .+++++
T Consensus 107 ~~~~~~~~~P~~~lId~~G~V~~~~~g~~~~~~~~~~~ 144 (146)
T PF08534_consen 107 EDPGNGFGIPTTFLIDKDGKVVYRHVGPDPDEESDLEA 144 (146)
T ss_dssp CCTTTTSSSSEEEEEETTSBEEEEEESSBTTSHHSHHH
T ss_pred cccccCCeecEEEEEECCCEEEEEEeCCCCCCCCChhh
Confidence 99987666 89999999998866 334443
No 98
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.49 E-value=3.3e-13 Score=81.76 Aligned_cols=70 Identities=21% Similarity=0.403 Sum_probs=52.9
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCC--------------------chhHHhhCCcccccEE
Q psy11159 44 ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDE--------------------LTDLAMDYEVSAVPVL 103 (141)
Q Consensus 44 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~--------------------~~~~~~~~~v~~~Pt~ 103 (141)
.+++++|+||++||++|+...|.+.++.+.+.+++.++.+..+. +.++.+.|++.++|+.
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~ 99 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYA 99 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeE
Confidence 37899999999999999999999999988886667666552111 1245667788888987
Q ss_pred EEE-eCCeEEE
Q psy11159 104 IAM-KNGKELD 113 (141)
Q Consensus 104 ~~~-~~g~~~~ 113 (141)
+++ ++|+.+.
T Consensus 100 ~vid~~G~v~~ 110 (114)
T cd02967 100 VLLDEAGVIAA 110 (114)
T ss_pred EEECCCCeEEe
Confidence 777 4676554
No 99
>smart00594 UAS UAS domain.
Probab=99.49 E-value=1.3e-12 Score=80.30 Aligned_cols=102 Identities=12% Similarity=0.192 Sum_probs=80.2
Q ss_pred eeeEEeChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHH---HHHHHHhcCCEEEEEEeCCC--chhHHhhCCccccc
Q psy11159 27 TSFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRL---EAVIDEMKGKVVLAKVDIDE--LTDLAMDYEVSAVP 101 (141)
Q Consensus 27 ~~~~~~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~P 101 (141)
+.+...+.++..+..+..+|+++|+|+++||+.|+.+...+ .++.+.+..++.+..+|++. ..+++..|++.++|
T Consensus 9 ~~f~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P 88 (122)
T smart00594 9 PLFYQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFP 88 (122)
T ss_pred CceeeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCC
Confidence 34555577777777777899999999999999999987654 45556665578887888764 44689999999999
Q ss_pred EEEEE-eCC-----eEEEEEecCCCHHHHHHHH
Q psy11159 102 VLIAM-KNG-----KELDRLIGLQDIDKLKSFI 128 (141)
Q Consensus 102 t~~~~-~~g-----~~~~~~~g~~~~~~l~~~i 128 (141)
+++++ ++| +.+.+..|..+.+++...+
T Consensus 89 ~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 89 YVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 99999 454 3577889999999988765
No 100
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.49 E-value=2.4e-13 Score=100.28 Aligned_cols=102 Identities=24% Similarity=0.465 Sum_probs=82.8
Q ss_pred eEEeChhhHHHHHhcC-CCcEEEEEecCCChhhhhhhHHHH---HHHHHhcCCEEEEEEeCCCch----hHHhhCCcccc
Q psy11159 29 FKVQDMNDFEKKVKNA-STPVIVDFFATWCNPCKTLTPRLE---AVIDEMKGKVVLAKVDIDELT----DLAMDYEVSAV 100 (141)
Q Consensus 29 ~~~~~~~~~~~~i~~~-~~~~lv~f~~~~C~~C~~~~~~l~---~~~~~~~~~~~~~~vd~~~~~----~~~~~~~v~~~ 100 (141)
..+.+..++++.+.++ +||++++|||+||-.|+.+++..- +...+.+ ++...+.|..++. ++.++|++-+.
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~-~~vlLqaDvT~~~p~~~~lLk~~~~~G~ 535 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ-DVVLLQADVTANDPAITALLKRLGVFGV 535 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC-CeEEEEeeecCCCHHHHHHHHHcCCCCC
Confidence 3444555788776554 569999999999999999988763 3444555 6999999987654 57899999999
Q ss_pred cEEEEEe-CCeEEEEEecCCCHHHHHHHHHHH
Q psy11159 101 PVLIAMK-NGKELDRLIGLQDIDKLKSFIDNL 131 (141)
Q Consensus 101 Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~ 131 (141)
|++++|. +|++.....|..+.+.+.+++++.
T Consensus 536 P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 536 PTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 9999995 888877899999999999999875
No 101
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.48 E-value=6.1e-13 Score=82.14 Aligned_cols=75 Identities=20% Similarity=0.256 Sum_probs=61.9
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhcC-CEEEEEEeCC---------------------------CchhHHhhC
Q psy11159 44 ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG-KVVLAKVDID---------------------------ELTDLAMDY 95 (141)
Q Consensus 44 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~---------------------------~~~~~~~~~ 95 (141)
.+++++++||++||+.|....|.+.++.+++++ ++.++.++.+ ....+.+.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 478999999999999999999999999999974 5777777541 122466789
Q ss_pred CcccccEEEEE-eCCeEEEEEecC
Q psy11159 96 EVSAVPVLIAM-KNGKELDRLIGL 118 (141)
Q Consensus 96 ~v~~~Pt~~~~-~~g~~~~~~~g~ 118 (141)
++.++|+.+++ ++|+++....|.
T Consensus 102 ~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCCcCCeEEEECCCCcEEEEEecC
Confidence 99999998888 689998888775
No 102
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.47 E-value=6.8e-13 Score=86.28 Aligned_cols=82 Identities=15% Similarity=0.135 Sum_probs=63.8
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEE------EEEeCCC-----------------------------c
Q psy11159 44 ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVL------AKVDIDE-----------------------------L 88 (141)
Q Consensus 44 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~------~~vd~~~-----------------------------~ 88 (141)
.+|..+|.|||+||++|+...|.+.++.++ ++.+ ..||.++ +
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~ 134 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA---KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDK 134 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHc---CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCc
Confidence 399999999999999999999999999654 2333 4444433 2
Q ss_pred hhHHhhCCcccccEE-EEE-eCCeEEEEEecCCCHHHHHHHH
Q psy11159 89 TDLAMDYEVSAVPVL-IAM-KNGKELDRLIGLQDIDKLKSFI 128 (141)
Q Consensus 89 ~~~~~~~~v~~~Pt~-~~~-~~g~~~~~~~g~~~~~~l~~~i 128 (141)
..+...|++.++|+. +++ ++|+++.+..|..+.+++.+.+
T Consensus 135 g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 135 GAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred chHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 245668899999854 444 8999999999999988887733
No 103
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.44 E-value=1.3e-12 Score=86.55 Aligned_cols=91 Identities=11% Similarity=0.134 Sum_probs=69.5
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhcC-CEEEEEEeCCC-------ch----hHHhhCCc--------------
Q psy11159 44 ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG-KVVLAKVDIDE-------LT----DLAMDYEV-------------- 97 (141)
Q Consensus 44 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~-------~~----~~~~~~~v-------------- 97 (141)
.++++||.||++||+.|+...|.|.++.+++.+ ++.++.+++++ ++ .+.+++++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~ 117 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGEN 117 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCc
Confidence 478999999999999999999999999999875 48888887531 11 22333321
Q ss_pred ------------------c----ccc----EEEEEeCCeEEEEEecCCCHHHHHHHHHHHHhc
Q psy11159 98 ------------------S----AVP----VLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEK 134 (141)
Q Consensus 98 ------------------~----~~P----t~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~ 134 (141)
. .+| ++++-++|+++.++.|..+.+++.+.|++++++
T Consensus 118 ~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~~ 180 (199)
T PTZ00056 118 THELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLGV 180 (199)
T ss_pred cCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 1 222 445558999999999998999999999998864
No 104
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.43 E-value=7.1e-13 Score=75.88 Aligned_cols=75 Identities=31% Similarity=0.602 Sum_probs=56.9
Q ss_pred eChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHH---HHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEe
Q psy11159 32 QDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRL---EAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMK 107 (141)
Q Consensus 32 ~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 107 (141)
.+.++..+..++.+|+++|+|+++||+.|+.+...+ .++.+.+.+++.++.+|.+....... +...++|+++++.
T Consensus 4 ~d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~-~~~~~~P~~~~ld 81 (82)
T PF13899_consen 4 SDYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQ-FDRQGYPTFFFLD 81 (82)
T ss_dssp SSHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHH-HHHCSSSEEEEEE
T ss_pred hhHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHH-hCCccCCEEEEeC
Confidence 355666666677899999999999999999998877 45555455579999999987665332 2226799999874
No 105
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.42 E-value=4.4e-12 Score=83.51 Aligned_cols=89 Identities=19% Similarity=0.343 Sum_probs=63.8
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeC------------------CCchhHHhhCCcccccEEEE
Q psy11159 44 ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDI------------------DELTDLAMDYEVSAVPVLIA 105 (141)
Q Consensus 44 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~------------------~~~~~~~~~~~v~~~Pt~~~ 105 (141)
.+++++++||++||+.|+...|.+.++.++...++.++..|. ....++.+.|++.++|+.++
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~l 152 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGVL 152 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEEE
Confidence 578999999999999999999999998876543344443210 01336778899999998777
Q ss_pred E-eCCeEEEEEecCCCHHHHHHHHHHHHh
Q psy11159 106 M-KNGKELDRLIGLQDIDKLKSFIDNLVE 133 (141)
Q Consensus 106 ~-~~g~~~~~~~g~~~~~~l~~~i~~~~~ 133 (141)
+ ++|+...+ ......+.++++++....
T Consensus 153 ID~~G~I~~~-g~~~~~~~le~ll~~l~~ 180 (189)
T TIGR02661 153 LDQDGKIRAK-GLTNTREHLESLLEADRE 180 (189)
T ss_pred ECCCCeEEEc-cCCCCHHHHHHHHHHHHc
Confidence 6 67877664 223466788888876543
No 106
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.41 E-value=4.8e-12 Score=85.54 Aligned_cols=90 Identities=13% Similarity=0.149 Sum_probs=69.4
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhcC-CEEEEEEeCC--------Cch---hHH-hhCC--------------
Q psy11159 44 ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG-KVVLAKVDID--------ELT---DLA-MDYE-------------- 96 (141)
Q Consensus 44 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~--------~~~---~~~-~~~~-------------- 96 (141)
.++++||.||++||+.|....|.|.++.+++++ ++.++.++++ ... ++. ++++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~ 177 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP 177 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence 478999999999999999999999999999975 4888888763 111 121 2221
Q ss_pred --------------------cccccEEEEE-eCCeEEEEEecCCCHHHHHHHHHHHHh
Q psy11159 97 --------------------VSAVPVLIAM-KNGKELDRLIGLQDIDKLKSFIDNLVE 133 (141)
Q Consensus 97 --------------------v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~~~~ 133 (141)
+...|+.+++ ++|+++.++.|..+.+++++.|+++++
T Consensus 178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred hhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 1224765555 899999999999999999999998874
No 107
>PLN02412 probable glutathione peroxidase
Probab=99.35 E-value=1.9e-11 Score=79.00 Aligned_cols=91 Identities=13% Similarity=0.172 Sum_probs=70.6
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhcC-CEEEEEEeCC--------CchhH----HhhCC--------------
Q psy11159 44 ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG-KVVLAKVDID--------ELTDL----AMDYE-------------- 96 (141)
Q Consensus 44 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~--------~~~~~----~~~~~-------------- 96 (141)
.++++||.||++||+.|+...|.+.++.+++++ ++.++.++++ ...++ .++++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~ 107 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGK 107 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCC
Confidence 378999999999999999999999999999985 4888888753 21111 11111
Q ss_pred --------------------cccccEEEEE-eCCeEEEEEecCCCHHHHHHHHHHHHhc
Q psy11159 97 --------------------VSAVPVLIAM-KNGKELDRLIGLQDIDKLKSFIDNLVEK 134 (141)
Q Consensus 97 --------------------v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~~~~~ 134 (141)
+...|+.+++ ++|+++.++.|..+.+++.+.|+++++.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~~ 166 (167)
T PLN02412 108 NTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLGQ 166 (167)
T ss_pred CCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence 2334766666 8999999999999999999999998764
No 108
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.34 E-value=3.9e-11 Score=77.75 Aligned_cols=93 Identities=18% Similarity=0.314 Sum_probs=73.0
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhc-CCEEEEEEeCCC-----------------------------chhHHh
Q psy11159 44 ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMK-GKVVLAKVDIDE-----------------------------LTDLAM 93 (141)
Q Consensus 44 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~vd~~~-----------------------------~~~~~~ 93 (141)
.++++|++||++||+.|....+.+.++.++++ .++.++.+..+. +..+.+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 47899999999999999999999999999987 468888887653 123567
Q ss_pred hCCcccccEEEEE-eCCeEEEEEe---------cCCCHHHHHHHHHHHHhccc
Q psy11159 94 DYEVSAVPVLIAM-KNGKELDRLI---------GLQDIDKLKSFIDNLVEKQS 136 (141)
Q Consensus 94 ~~~v~~~Pt~~~~-~~g~~~~~~~---------g~~~~~~l~~~i~~~~~~~~ 136 (141)
.|++..+|+++++ ++|+++.... +..+.+++.+.|+.++...+
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 156 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKP 156 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCC
Confidence 8899999988888 6887765431 22456889999999886543
No 109
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.33 E-value=2.1e-11 Score=77.70 Aligned_cols=89 Identities=16% Similarity=0.168 Sum_probs=67.6
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhcC-CEEEEEEeC--------CCch---hHHhh-CC--------------
Q psy11159 44 ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG-KVVLAKVDI--------DELT---DLAMD-YE-------------- 96 (141)
Q Consensus 44 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~--------~~~~---~~~~~-~~-------------- 96 (141)
.+|++||.||++||++|....|.+.++.+++++ ++.++.+++ +... .+.++ ++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~ 100 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS 100 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence 378899999999999999999999999999974 588888874 1111 12211 11
Q ss_pred ---------c---cccc-----EEEEEeCCeEEEEEecCCCHHHHHHHHHHHH
Q psy11159 97 ---------V---SAVP-----VLIAMKNGKELDRLIGLQDIDKLKSFIDNLV 132 (141)
Q Consensus 97 ---------v---~~~P-----t~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 132 (141)
+ .+.| ++++-++|+++.++.|..+.+++.+.|++++
T Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l~ 153 (153)
T TIGR02540 101 EAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV 153 (153)
T ss_pred CCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHhC
Confidence 1 1367 4555599999999999999999999888753
No 110
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=8.7e-11 Score=73.20 Aligned_cols=93 Identities=16% Similarity=0.333 Sum_probs=76.5
Q ss_pred HhcCCCcEEEEEecCCChhhhhhhHHH---HHHHHHhcCCEEEEEEeCCC----------------chhHHhhCCccccc
Q psy11159 41 VKNASTPVIVDFFATWCNPCKTLTPRL---EAVIDEMKGKVVLAKVDIDE----------------LTDLAMDYEVSAVP 101 (141)
Q Consensus 41 i~~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vd~~~----------------~~~~~~~~~v~~~P 101 (141)
+..+++..+++|-++.|++|.++...+ .++.+-+.+++.++++++.. ..++++.|+|+++|
T Consensus 38 i~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstP 117 (182)
T COG2143 38 ISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTP 117 (182)
T ss_pred cCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCc
Confidence 344689999999999999999998776 55666666678888888632 34899999999999
Q ss_pred EEEEE-eCCeEEEEEecCCCHHHHHHHHHHHHh
Q psy11159 102 VLIAM-KNGKELDRLIGLQDIDKLKSFIDNLVE 133 (141)
Q Consensus 102 t~~~~-~~g~~~~~~~g~~~~~~l~~~i~~~~~ 133 (141)
|+++| ++|+.+....|+.+.+++...++-..+
T Consensus 118 tfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~ 150 (182)
T COG2143 118 TFVFFDKTGKTILELPGYMPPEQFLAVLKYVAD 150 (182)
T ss_pred eEEEEcCCCCEEEecCCCCCHHHHHHHHHHHHH
Confidence 99999 788999999999999988877665443
No 111
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.29 E-value=3e-11 Score=72.58 Aligned_cols=85 Identities=40% Similarity=0.822 Sum_probs=70.3
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCC-CchhHHhhCC--cccccEEEEEeCCeEEEEEec--CC
Q psy11159 45 STPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDID-ELTDLAMDYE--VSAVPVLIAMKNGKELDRLIG--LQ 119 (141)
Q Consensus 45 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~-~~~~~~~~~~--v~~~Pt~~~~~~g~~~~~~~g--~~ 119 (141)
++++++.||++||++|+.+.|.+.++.+.+...+.++.++.. .+..+...|+ +..+|+++++.+|+......+ ..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 111 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKVL 111 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhhcccC
Confidence 778999999999999999999999999999867899999997 7889999999 999999998888876555555 34
Q ss_pred CHHHHHHHHH
Q psy11159 120 DIDKLKSFID 129 (141)
Q Consensus 120 ~~~~l~~~i~ 129 (141)
+...+.....
T Consensus 112 ~~~~~~~~~~ 121 (127)
T COG0526 112 PKEALIDALG 121 (127)
T ss_pred CHHHHHHHhc
Confidence 5555544443
No 112
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=99.27 E-value=9.8e-11 Score=80.49 Aligned_cols=92 Identities=18% Similarity=0.386 Sum_probs=73.6
Q ss_pred eeeeeEEeChhhHHHHHhcC--CCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccE
Q psy11159 25 VYTSFKVQDMNDFEKKVKNA--STPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPV 102 (141)
Q Consensus 25 ~~~~~~~~~~~~~~~~i~~~--~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt 102 (141)
...+.++.+.++|.+.+... +..+||+||.+.++.|..+...|..++.+|+ .+.|+++..+..+ +...|.+..+||
T Consensus 124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp-~vKFvkI~a~~~~-~~~~f~~~~LPt 201 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYP-EVKFVKIRASKCP-ASENFPDKNLPT 201 (265)
T ss_dssp --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T-TSEEEEEEECGCC-TTTTS-TTC-SE
T ss_pred CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC-ceEEEEEehhccC-cccCCcccCCCE
Confidence 34566777888999887554 4578999999999999999999999999999 7999999998765 778899999999
Q ss_pred EEEEeCCeEEEEEecC
Q psy11159 103 LIAMKNGKELDRLIGL 118 (141)
Q Consensus 103 ~~~~~~g~~~~~~~g~ 118 (141)
+++|++|..+..+.|.
T Consensus 202 llvYk~G~l~~~~V~l 217 (265)
T PF02114_consen 202 LLVYKNGDLIGNFVGL 217 (265)
T ss_dssp EEEEETTEEEEEECTG
T ss_pred EEEEECCEEEEeEEeh
Confidence 9999999999988765
No 113
>PF13728 TraF: F plasmid transfer operon protein
Probab=99.26 E-value=1.9e-10 Score=77.03 Aligned_cols=82 Identities=22% Similarity=0.300 Sum_probs=68.4
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCC-----------CchhHHhhCCcccccEEEEE-eCC-eE
Q psy11159 45 STPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDID-----------ELTDLAMDYEVSAVPVLIAM-KNG-KE 111 (141)
Q Consensus 45 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~-----------~~~~~~~~~~v~~~Pt~~~~-~~g-~~ 111 (141)
++..++.||.+.|++|+.+.|.+..++++++ +.+..|+.| .+..+.++++|..+|+++++ .++ +.
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~ 197 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKW 197 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeE
Confidence 7888999999999999999999999999994 777777766 35678999999999998888 344 45
Q ss_pred EEEEecCCCHHHHHHHH
Q psy11159 112 LDRLIGLQDIDKLKSFI 128 (141)
Q Consensus 112 ~~~~~g~~~~~~l~~~i 128 (141)
..-..|..+.++|.+-|
T Consensus 198 ~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 198 YPVSQGFMSLDELEDRI 214 (215)
T ss_pred EEEeeecCCHHHHHHhh
Confidence 55667999999987654
No 114
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.26 E-value=4.9e-11 Score=75.95 Aligned_cols=83 Identities=16% Similarity=0.268 Sum_probs=61.5
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhcC-CEEEEEEeCCC--------ch---hHHhh-CC--------------
Q psy11159 44 ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG-KVVLAKVDIDE--------LT---DLAMD-YE-------------- 96 (141)
Q Consensus 44 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~--------~~---~~~~~-~~-------------- 96 (141)
.+|++++.||++||+ |....|.+.++.+++.+ ++.++.++++. .. .+.++ ++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~~ 99 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGE 99 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccCC
Confidence 378999999999999 99999999999999974 58888886532 11 22221 11
Q ss_pred ---------ccccc-----------EEEEE-eCCeEEEEEecCCCHHHHHHH
Q psy11159 97 ---------VSAVP-----------VLIAM-KNGKELDRLIGLQDIDKLKSF 127 (141)
Q Consensus 97 ---------v~~~P-----------t~~~~-~~g~~~~~~~g~~~~~~l~~~ 127 (141)
+.++| +.+++ ++|+++.++.|..+.+++++.
T Consensus 100 ~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 100 NAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred CCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 23456 44444 899999999999988887654
No 115
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=99.23 E-value=1.5e-10 Score=70.18 Aligned_cols=79 Identities=24% Similarity=0.560 Sum_probs=57.4
Q ss_pred EeChhhHHHHHhc---CCCcEEEEEec-------CCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCch-------hHHh
Q psy11159 31 VQDMNDFEKKVKN---ASTPVIVDFFA-------TWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT-------DLAM 93 (141)
Q Consensus 31 ~~~~~~~~~~i~~---~~~~~lv~f~~-------~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~-------~~~~ 93 (141)
+...+++.+.+.+ ++++++|+|++ +|||.|+...|.+++.....+++..++++.+..-+ .+.+
T Consensus 2 v~gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~ 81 (119)
T PF06110_consen 2 VRGYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRT 81 (119)
T ss_dssp EECHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH
T ss_pred ccCHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceE
Confidence 4567788888765 46899999996 49999999999999988888778899988875322 3444
Q ss_pred --hCCcccccEEEEEeCC
Q psy11159 94 --DYEVSAVPVLIAMKNG 109 (141)
Q Consensus 94 --~~~v~~~Pt~~~~~~g 109 (141)
++++.++||++-+.++
T Consensus 82 ~p~~~l~~IPTLi~~~~~ 99 (119)
T PF06110_consen 82 DPDLKLKGIPTLIRWETG 99 (119)
T ss_dssp --CC---SSSEEEECTSS
T ss_pred cceeeeeecceEEEECCC
Confidence 6999999999999766
No 116
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=99.23 E-value=1.3e-10 Score=71.90 Aligned_cols=74 Identities=26% Similarity=0.415 Sum_probs=53.5
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhC---CcccccEEEEE-eCCeEEEEEecC
Q psy11159 44 ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDY---EVSAVPVLIAM-KNGKELDRLIGL 118 (141)
Q Consensus 44 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~---~v~~~Pt~~~~-~~g~~~~~~~g~ 118 (141)
..+..++.|..+|||.|+...|.+.++++..+ ++.+-.+..|+++++..+| |...+|+++++ .+|+++.+....
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~wger 117 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRWGER 117 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEEESS
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEEcCC
Confidence 35678999999999999999999999999987 6888888889998888766 67889999999 456777765544
No 117
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.22 E-value=1.3e-10 Score=64.73 Aligned_cols=69 Identities=22% Similarity=0.535 Sum_probs=53.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchh----HHhhCCcccccEEEEEeCCeEEEEEecCCCHHHH
Q psy11159 49 IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTD----LAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKL 124 (141)
Q Consensus 49 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l 124 (141)
+..|+++||++|+.+.+.+.+. ++.+..+|+++++. +.+.+++.++|++++. |+. ..|. +.+.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~-~~~~i 69 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGF-DPEKL 69 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeC-CHHHH
Confidence 4679999999999998887652 58888999987654 4567899999998873 543 5565 77888
Q ss_pred HHHHH
Q psy11159 125 KSFID 129 (141)
Q Consensus 125 ~~~i~ 129 (141)
.++|+
T Consensus 70 ~~~i~ 74 (74)
T TIGR02196 70 DQLLE 74 (74)
T ss_pred HHHhC
Confidence 87763
No 118
>KOG0914|consensus
Probab=99.21 E-value=3.7e-11 Score=78.71 Aligned_cols=89 Identities=25% Similarity=0.479 Sum_probs=73.4
Q ss_pred eeEEeChhhHHHHH-hcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcC-CEEEEEEeCCCchhHHhhCCcc------c
Q psy11159 28 SFKVQDMNDFEKKV-KNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG-KVVLAKVDIDELTDLAMDYEVS------A 99 (141)
Q Consensus 28 ~~~~~~~~~~~~~i-~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~------~ 99 (141)
+....+.+.+++.+ .+..+.++|.|++-|.+.|+.+.|.+.++..+|.. .+.|.++|+..-++.+++|+|. .
T Consensus 126 ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQ 205 (265)
T KOG0914|consen 126 IKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQ 205 (265)
T ss_pred eeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCccccc
Confidence 33343555555554 34478999999999999999999999999999874 6999999999999999999876 4
Q ss_pred ccEEEEEeCCeEEEEEe
Q psy11159 100 VPVLIAMKNGKELDRLI 116 (141)
Q Consensus 100 ~Pt~~~~~~g~~~~~~~ 116 (141)
.||+++|++|+++.|..
T Consensus 206 LPT~ilFq~gkE~~RrP 222 (265)
T KOG0914|consen 206 LPTYILFQKGKEVSRRP 222 (265)
T ss_pred CCeEEEEccchhhhcCc
Confidence 79999999999887654
No 119
>KOG2501|consensus
Probab=99.20 E-value=7.5e-11 Score=74.04 Aligned_cols=70 Identities=30% Similarity=0.591 Sum_probs=57.7
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCC---EEEEEEeCCCch-------------------------hHHhhC
Q psy11159 44 ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGK---VVLAKVDIDELT-------------------------DLAMDY 95 (141)
Q Consensus 44 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~~-------------------------~~~~~~ 95 (141)
.+|.+.++|.|.||++|+.+-|.+.++.++..+. +.++.|+.|.+. +++++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 4799999999999999999999999988877655 777777766532 578899
Q ss_pred CcccccEEEEE-eCCeEEE
Q psy11159 96 EVSAVPVLIAM-KNGKELD 113 (141)
Q Consensus 96 ~v~~~Pt~~~~-~~g~~~~ 113 (141)
+|.++|++.++ .+|..+.
T Consensus 112 ~v~~iP~l~i~~~dG~~v~ 130 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVVT 130 (157)
T ss_pred ccCcCceeEEecCCCCEeh
Confidence 99999998888 6776665
No 120
>KOG1672|consensus
Probab=99.19 E-value=6.9e-11 Score=76.09 Aligned_cols=92 Identities=23% Similarity=0.383 Sum_probs=83.3
Q ss_pred eeeeEEeChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEE
Q psy11159 26 YTSFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIA 105 (141)
Q Consensus 26 ~~~~~~~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 105 (141)
....++.+..+|-+....+.+ +|+.||-+.-..|+.|-..|+.+++.+- ...|++||+.+.|-++.+++|..+|++.+
T Consensus 66 G~y~ev~~Ekdf~~~~~kS~k-VVcHFY~~~f~RCKimDkhLe~LAk~h~-eTrFikvnae~~PFlv~kL~IkVLP~v~l 143 (211)
T KOG1672|consen 66 GEYEEVASEKDFFEEVKKSEK-VVCHFYRPEFFRCKIMDKHLEILAKRHV-ETRFIKVNAEKAPFLVTKLNIKVLPTVAL 143 (211)
T ss_pred ceEEEeccHHHHHHHhhcCce-EEEEEEcCCCcceehHHHHHHHHHHhcc-cceEEEEecccCceeeeeeeeeEeeeEEE
Confidence 346677789999998766555 8899999999999999999999999998 69999999999999999999999999999
Q ss_pred EeCCeEEEEEecCC
Q psy11159 106 MKNGKELDRLIGLQ 119 (141)
Q Consensus 106 ~~~g~~~~~~~g~~ 119 (141)
|++|+.+.++.|+.
T Consensus 144 ~k~g~~~D~iVGF~ 157 (211)
T KOG1672|consen 144 FKNGKTVDYVVGFT 157 (211)
T ss_pred EEcCEEEEEEeeHh
Confidence 99999999998874
No 121
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=99.19 E-value=2e-10 Score=73.06 Aligned_cols=106 Identities=15% Similarity=0.244 Sum_probs=63.0
Q ss_pred eeeEEeChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHH---HHHHHHhcCCEEEEEEeCCCchhHHhhC--------
Q psy11159 27 TSFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRL---EAVIDEMKGKVVLAKVDIDELTDLAMDY-------- 95 (141)
Q Consensus 27 ~~~~~~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vd~~~~~~~~~~~-------- 95 (141)
++.+....++..+..+..+|+++|.++.+||..|+.|.... .++++.+..++.-+++|.++.|++...|
T Consensus 19 ~V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~ 98 (163)
T PF03190_consen 19 PVNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMS 98 (163)
T ss_dssp SS--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHH
T ss_pred CCCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhc
Confidence 34444444344444577799999999999999999987533 4566666556888999999999998887
Q ss_pred CcccccEEEEE-eCCeEEEEEecCCC-----HHHHHHHHHHHH
Q psy11159 96 EVSAVPVLIAM-KNGKELDRLIGLQD-----IDKLKSFIDNLV 132 (141)
Q Consensus 96 ~v~~~Pt~~~~-~~g~~~~~~~g~~~-----~~~l~~~i~~~~ 132 (141)
|..|.|+.++. .+|+.+...+.... ...|.+.+.+..
T Consensus 99 ~~gGwPl~vfltPdg~p~~~~tY~P~~~~~g~~~f~~~l~~i~ 141 (163)
T PF03190_consen 99 GSGGWPLTVFLTPDGKPFFGGTYFPPEDRYGRPGFLQLLERIA 141 (163)
T ss_dssp S---SSEEEEE-TTS-EEEEESS--SS-BTTB--HHHHHHHHH
T ss_pred CCCCCCceEEECCCCCeeeeeeecCCCCCCCCccHHHHHHHHH
Confidence 78899987777 88888775444321 134555555443
No 122
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=99.19 E-value=1.7e-09 Score=65.68 Aligned_cols=99 Identities=13% Similarity=0.194 Sum_probs=76.8
Q ss_pred ChhhHHHHHhcCCCcEEEEEecC----CChhhhhh--hHHHHHHHHHhcCCEEEEEEeCCCc--hhHHhhCCcccccEEE
Q psy11159 33 DMNDFEKKVKNASTPVIVDFFAT----WCNPCKTL--TPRLEAVIDEMKGKVVLAKVDIDEL--TDLAMDYEVSAVPVLI 104 (141)
Q Consensus 33 ~~~~~~~~i~~~~~~~lv~f~~~----~C~~C~~~--~~~l~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~ 104 (141)
+.++..+..+.+.|+++|+++++ ||..|+.. .|.+.+.. ..++.+...|++.. .+++..+++.++|++.
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~l---n~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~ 81 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYI---NTRMLFWACSVAKPEGYRVSQALRERTYPFLA 81 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHH---HcCEEEEEEecCChHHHHHHHHhCCCCCCEEE
Confidence 45566666677899999999999 88888655 33333333 34688888888754 4688899999999988
Q ss_pred EE--eC--CeEEEEEecCCCHHHHHHHHHHHHhc
Q psy11159 105 AM--KN--GKELDRLIGLQDIDKLKSFIDNLVEK 134 (141)
Q Consensus 105 ~~--~~--g~~~~~~~g~~~~~~l~~~i~~~~~~ 134 (141)
++ ++ .+.+.+..|..+.+++...|...+++
T Consensus 82 ~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~ 115 (116)
T cd02991 82 MIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMDA 115 (116)
T ss_pred EEEecCCceEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 88 23 34688999999999999999998765
No 123
>KOG3414|consensus
Probab=99.18 E-value=1.3e-10 Score=69.67 Aligned_cols=103 Identities=19% Similarity=0.388 Sum_probs=85.0
Q ss_pred EEeChhhHHHHHhcC-CCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeC
Q psy11159 30 KVQDMNDFEKKVKNA-STPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKN 108 (141)
Q Consensus 30 ~~~~~~~~~~~i~~~-~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 108 (141)
++.+..+.++.+... .+.+|+.|..+|.+.|..+...|.++++...+-..++-+|+++.+++.+.|++...|++++|-+
T Consensus 7 ~L~s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn 86 (142)
T KOG3414|consen 7 TLHSGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFN 86 (142)
T ss_pred ccccHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEc
Confidence 456778888888765 8899999999999999999999999999999778999999999999999999999999999877
Q ss_pred CeEEEEEecC----------CCHHHHHHHHHHHH
Q psy11159 109 GKELDRLIGL----------QDIDKLKSFIDNLV 132 (141)
Q Consensus 109 g~~~~~~~g~----------~~~~~l~~~i~~~~ 132 (141)
++-+-.-.|. .+.+++.+.++..-
T Consensus 87 ~kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~iy 120 (142)
T KOG3414|consen 87 NKHMKIDLGTGDNNKINFAFEDKQEFIDIIETIY 120 (142)
T ss_pred CceEEEeeCCCCCceEEEEeccHHHHHHHHHHHH
Confidence 7655333332 34567777776654
No 124
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.17 E-value=4.4e-10 Score=70.35 Aligned_cols=84 Identities=18% Similarity=0.242 Sum_probs=66.7
Q ss_pred CCcEEEEEe-cCCChhhhhhhHHHHHHHHHhcC-CEEEEEEeCCC---------------------chhHHhhCCcccc-
Q psy11159 45 STPVIVDFF-ATWCNPCKTLTPRLEAVIDEMKG-KVVLAKVDIDE---------------------LTDLAMDYEVSAV- 100 (141)
Q Consensus 45 ~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~---------------------~~~~~~~~~v~~~- 100 (141)
+++++|.|| +.||+.|....+.+.++.+++.+ ++.++.+..+. ...+.+.|++...
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~ 102 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGEK 102 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccc
Confidence 789999999 58999999999999999888763 57777776543 3357778888887
Q ss_pred --------cEEEEE-eCCeEEEEEecCCCHHHHHHHH
Q psy11159 101 --------PVLIAM-KNGKELDRLIGLQDIDKLKSFI 128 (141)
Q Consensus 101 --------Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i 128 (141)
|+.+++ ++|+++..+.|....+++.+.+
T Consensus 103 ~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 103 KKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred ccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 887777 5799999999987777766544
No 125
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=99.16 E-value=6.5e-09 Score=63.24 Aligned_cols=103 Identities=19% Similarity=0.338 Sum_probs=82.0
Q ss_pred EEeChhhHHHHHhcC-CCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCccccc-EEEEEe
Q psy11159 30 KVQDMNDFEKKVKNA-STPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVP-VLIAMK 107 (141)
Q Consensus 30 ~~~~~~~~~~~i~~~-~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P-t~~~~~ 107 (141)
++.+..+.++++... ++.+++.|..+|.+.|..+-..|.+++++.++-..++.+|.++-+++.+.|++. .| |+++|.
T Consensus 4 ~L~s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~ 82 (133)
T PF02966_consen 4 HLHSGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFF 82 (133)
T ss_dssp EE-SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEEE
T ss_pred ccCccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEEe
Confidence 456778888888765 899999999999999999999999999999988999999999999999999999 77 677777
Q ss_pred CCeEEEEEecC----------CCHHHHHHHHHHHHh
Q psy11159 108 NGKELDRLIGL----------QDIDKLKSFIDNLVE 133 (141)
Q Consensus 108 ~g~~~~~~~g~----------~~~~~l~~~i~~~~~ 133 (141)
+++.+.--.|. .+.+++...++..-+
T Consensus 83 rnkhm~vD~GtgnnnKin~~~~~kqe~iDiie~iyr 118 (133)
T PF02966_consen 83 RNKHMMVDFGTGNNNKINWAFEDKQEFIDIIETIYR 118 (133)
T ss_dssp TTEEEEEESSSSSSSSBCS--SCHHHHHHHHHHHHH
T ss_pred cCeEEEEEecCCCccEEEEEcCcHHHHHHHHHHHHH
Confidence 78766544443 246777777776543
No 126
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.16 E-value=2.9e-10 Score=63.96 Aligned_cols=70 Identities=24% Similarity=0.373 Sum_probs=49.8
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhh-----CCcccccEEEEEeCCeEEEEEecCCCHHH
Q psy11159 49 IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD-----YEVSAVPVLIAMKNGKELDRLIGLQDIDK 123 (141)
Q Consensus 49 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~-----~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~ 123 (141)
++.||++||++|+.+++.+.++ ++.+-.+|+++++..... +++.++|++ ++.+|+.+. ..+..+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~------~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~----~~~~~~ 70 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL------GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT----NPSAAQ 70 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec----CCCHHH
Confidence 5789999999999999988765 355567888877665554 489999996 466775433 335556
Q ss_pred HHHHHH
Q psy11159 124 LKSFID 129 (141)
Q Consensus 124 l~~~i~ 129 (141)
+.+.|+
T Consensus 71 ~~~~l~ 76 (77)
T TIGR02200 71 VKAKLQ 76 (77)
T ss_pred HHHHhh
Confidence 655543
No 127
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.15 E-value=6.5e-10 Score=72.86 Aligned_cols=90 Identities=13% Similarity=0.161 Sum_probs=66.6
Q ss_pred CCCcE-EEEEecCCChhhhhhhHHHHHHHHHhcC-CEEEEEEeCCC-------c-hh---H-Hhh---------------
Q psy11159 44 ASTPV-IVDFFATWCNPCKTLTPRLEAVIDEMKG-KVVLAKVDIDE-------L-TD---L-AMD--------------- 94 (141)
Q Consensus 44 ~~~~~-lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~-------~-~~---~-~~~--------------- 94 (141)
.++++ ++.+|++||++|+...|.+.++.+++++ ++.++.++++. . .+ + .++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g 118 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNG 118 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecCC
Confidence 36755 4566999999999999999999999874 48888887531 0 10 0 111
Q ss_pred ---------------------CCcccccE----EEEEeCCeEEEEEecCCCHHHHHHHHHHHHh
Q psy11159 95 ---------------------YEVSAVPV----LIAMKNGKELDRLIGLQDIDKLKSFIDNLVE 133 (141)
Q Consensus 95 ---------------------~~v~~~Pt----~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~ 133 (141)
+++.++|+ +++-++|+++.++.|..+.+++.+.|+++++
T Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 119 ENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLLN 182 (183)
T ss_pred CCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHhc
Confidence 13446784 5555899999999999999999999988764
No 128
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=99.12 E-value=1.8e-09 Score=60.78 Aligned_cols=72 Identities=26% Similarity=0.597 Sum_probs=55.9
Q ss_pred EEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeEEEEEec-CCCHHHHHHHHH
Q psy11159 51 DFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIG-LQDIDKLKSFID 129 (141)
Q Consensus 51 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g-~~~~~~l~~~i~ 129 (141)
.+++++|++|..+...++++...++ +.+-.+|....+++ .+|||.++|++++ ||+. ++.| ..+.+++.++|+
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~~--~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG--IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGKV--VFVGRVPSKEELKELLE 76 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTEE--EEESS--HHHHHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCEE--EEEecCCCHHHHHHHhC
Confidence 3478889999999999999999984 66667777666666 9999999999866 7864 4567 668889998875
No 129
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=99.11 E-value=3.8e-09 Score=72.14 Aligned_cols=89 Identities=18% Similarity=0.218 Sum_probs=72.9
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCc-----------hhHHhhCCcccccEEEEE-eC-CeE
Q psy11159 45 STPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDEL-----------TDLAMDYEVSAVPVLIAM-KN-GKE 111 (141)
Q Consensus 45 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~-----------~~~~~~~~v~~~Pt~~~~-~~-g~~ 111 (141)
++..++.||.+.|++|+.+.|.+..++++++ +.++.|++|.. ...++++|+..+|+++++ .+ ++.
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence 6688999999999999999999999999995 67777766644 347889999999988888 44 444
Q ss_pred EEEEecCCCHHHHHHHHHHHHhcc
Q psy11159 112 LDRLIGLQDIDKLKSFIDNLVEKQ 135 (141)
Q Consensus 112 ~~~~~g~~~~~~l~~~i~~~~~~~ 135 (141)
..-..|..+.++|.+-|.......
T Consensus 228 ~pv~~G~iS~deL~~Ri~~v~~~f 251 (256)
T TIGR02739 228 SPLAYGFISQDELKERILNVLTQF 251 (256)
T ss_pred EEEeeccCCHHHHHHHHHHHHhcc
Confidence 456679999999999888877554
No 130
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.07 E-value=1.1e-09 Score=62.58 Aligned_cols=60 Identities=23% Similarity=0.276 Sum_probs=45.8
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCch-----hHHhhCCcccccEEEEEeCCeEE
Q psy11159 49 IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT-----DLAMDYEVSAVPVLIAMKNGKEL 112 (141)
Q Consensus 49 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~-----~~~~~~~v~~~Pt~~~~~~g~~~ 112 (141)
++.|+++||++|..+.+.+.++. .++.+.++.++.+.+. .+.+.+++.++|++++ +|+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~i 65 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGKFI 65 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 46899999999999999999976 3334777888876543 2666779999999754 77544
No 131
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.07 E-value=2.2e-09 Score=65.69 Aligned_cols=70 Identities=26% Similarity=0.548 Sum_probs=57.5
Q ss_pred CCCcEEEEEecC-CChhhhhhhHHHHHHHHHhcC-CEEEEEEeCCC---------------------chhHHhhCCcc--
Q psy11159 44 ASTPVIVDFFAT-WCNPCKTLTPRLEAVIDEMKG-KVVLAKVDIDE---------------------LTDLAMDYEVS-- 98 (141)
Q Consensus 44 ~~~~~lv~f~~~-~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~---------------------~~~~~~~~~v~-- 98 (141)
.+++++|.||+. ||+.|....+.+.++.++++. ++.++.+..+. +.++.+.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 478999999999 999999999999999988874 58888888754 33577888988
Q ss_pred ----cccEEEEE-eCCeEEE
Q psy11159 99 ----AVPVLIAM-KNGKELD 113 (141)
Q Consensus 99 ----~~Pt~~~~-~~g~~~~ 113 (141)
.+|+++++ ++|+++.
T Consensus 104 ~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp TTSEESEEEEEEETTSBEEE
T ss_pred cCCceEeEEEEECCCCEEEe
Confidence 89987777 6666554
No 132
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=99.07 E-value=1.2e-09 Score=74.04 Aligned_cols=82 Identities=20% Similarity=0.386 Sum_probs=62.7
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeC--------------------------------------
Q psy11159 44 ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDI-------------------------------------- 85 (141)
Q Consensus 44 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~-------------------------------------- 85 (141)
+++.+++.|+.+.||+|+++.+.+.++.+. ++.+..+..
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~---~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL---GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC---CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 367889999999999999999998887542 344443321
Q ss_pred ------CCchhHHhhCCcccccEEEEEeCCeEEEEEecCCCHHHHHHHHHHHH
Q psy11159 86 ------DELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLV 132 (141)
Q Consensus 86 ------~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 132 (141)
+++.++++++||.++|+++ +.+|+.+ .|..+.++|.++|++..
T Consensus 183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~~~~~~L~~~l~~~~ 231 (232)
T PRK10877 183 SCDVDIADHYALGVQFGVQGTPAIV-LSNGTLV---PGYQGPKEMKAFLDEHQ 231 (232)
T ss_pred cccchHHHhHHHHHHcCCccccEEE-EcCCeEe---eCCCCHHHHHHHHHHcc
Confidence 1234688899999999987 6788654 79999999999998653
No 133
>KOG3425|consensus
Probab=99.06 E-value=1.5e-09 Score=64.68 Aligned_cols=76 Identities=24% Similarity=0.507 Sum_probs=60.8
Q ss_pred ChhhHHHHHhc--CCCcEEEEEec--------CCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCc-------hhHHhhC
Q psy11159 33 DMNDFEKKVKN--ASTPVIVDFFA--------TWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDEL-------TDLAMDY 95 (141)
Q Consensus 33 ~~~~~~~~i~~--~~~~~lv~f~~--------~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~-------~~~~~~~ 95 (141)
-.++|++.+.+ +++-++++|++ +|||.|++..|.+.+..+..+.++.|+.+++.+- ..+....
T Consensus 11 g~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~ 90 (128)
T KOG3425|consen 11 GYESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDP 90 (128)
T ss_pred hHHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCC
Confidence 45666666644 35559999997 5999999999999999998888999999998653 3566777
Q ss_pred Cc-ccccEEEEEeC
Q psy11159 96 EV-SAVPVLIAMKN 108 (141)
Q Consensus 96 ~v-~~~Pt~~~~~~ 108 (141)
++ .++||++-+++
T Consensus 91 ~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 91 GILTAVPTLLRWKR 104 (128)
T ss_pred CceeecceeeEEcC
Confidence 77 89999999864
No 134
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=99.06 E-value=1.5e-09 Score=58.14 Aligned_cols=60 Identities=35% Similarity=0.675 Sum_probs=50.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHh---hCCcccccEEEEEeCC
Q psy11159 49 IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAM---DYEVSAVPVLIAMKNG 109 (141)
Q Consensus 49 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~---~~~v~~~Pt~~~~~~g 109 (141)
++.|+++||++|+.+.+.+.++ +....++.+..++++....... .+++..+|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4789999999999999999998 4444579999999998876554 7899999999998766
No 135
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=99.05 E-value=7.6e-09 Score=61.14 Aligned_cols=96 Identities=20% Similarity=0.245 Sum_probs=68.1
Q ss_pred eEEeChhhHHHHHhcC-CCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCch----hHHhhCCcccc-cE
Q psy11159 29 FKVQDMNDFEKKVKNA-STPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT----DLAMDYEVSAV-PV 102 (141)
Q Consensus 29 ~~~~~~~~~~~~i~~~-~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~v~~~-Pt 102 (141)
..+.+.+++++++.++ ++++++.=.+..|+-+......+++.....++++.++.+|+-++. .++++|||..- |.
T Consensus 2 ~~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ 81 (105)
T PF11009_consen 2 KPLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQ 81 (105)
T ss_dssp -E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSE
T ss_pred CccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCc
Confidence 3567889999988765 778888888999999999999999999988866999999998765 57889998864 99
Q ss_pred EEEEeCCeEEEEE-ecCCCHHHH
Q psy11159 103 LIAMKNGKELDRL-IGLQDIDKL 124 (141)
Q Consensus 103 ~~~~~~g~~~~~~-~g~~~~~~l 124 (141)
++++++|+.++.. .+.++.+.|
T Consensus 82 ~ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 82 VILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EEEEETTEEEEEEEGGG-SHHHH
T ss_pred EEEEECCEEEEECccccCCHHhc
Confidence 9999999998754 344566655
No 136
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.02 E-value=7.4e-09 Score=67.28 Aligned_cols=88 Identities=18% Similarity=0.232 Sum_probs=64.9
Q ss_pred CCCcEEEEEe-cCCChhhhhhhHHHHHHHHHhcC-CEEEEEEeCCCc----------------------------hhHHh
Q psy11159 44 ASTPVIVDFF-ATWCNPCKTLTPRLEAVIDEMKG-KVVLAKVDIDEL----------------------------TDLAM 93 (141)
Q Consensus 44 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~----------------------------~~~~~ 93 (141)
.+++++|.|| +.||+.|....+.+.++.+++.+ ++.++.|..|.. ..+.+
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 3689999999 89999999999999999988863 467776665432 23556
Q ss_pred hCCcc------cccEEEEE-eCCeEEEEEecC----CCHHHHHHHHHHH
Q psy11159 94 DYEVS------AVPVLIAM-KNGKELDRLIGL----QDIDKLKSFIDNL 131 (141)
Q Consensus 94 ~~~v~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~i~~~ 131 (141)
.|++. ..|+.+++ ++|+++....+. .+.+++.+.|+++
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 77775 46777777 688888877543 3566777777655
No 137
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.01 E-value=4.9e-09 Score=67.76 Aligned_cols=73 Identities=15% Similarity=0.255 Sum_probs=57.4
Q ss_pred CCCcEEEEEecCC-ChhhhhhhHHHHHHHHHhcCCEEEEEEeCCC-----------------------chhHHhhCCccc
Q psy11159 44 ASTPVIVDFFATW-CNPCKTLTPRLEAVIDEMKGKVVLAKVDIDE-----------------------LTDLAMDYEVSA 99 (141)
Q Consensus 44 ~~~~~lv~f~~~~-C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~-----------------------~~~~~~~~~v~~ 99 (141)
.+|++++.||++| |+.|....+.+.++.+++. ++.++.+..|. ...+++.||+..
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~ 121 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAI 121 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCee
Confidence 3789999999999 9999999999999998885 67777776543 125677888877
Q ss_pred cc---------EEEEE-eCCeEEEEEec
Q psy11159 100 VP---------VLIAM-KNGKELDRLIG 117 (141)
Q Consensus 100 ~P---------t~~~~-~~g~~~~~~~g 117 (141)
.| +.+++ ++|+++....+
T Consensus 122 ~~~~~~g~~~r~tfvId~~G~I~~~~~~ 149 (167)
T PRK00522 122 AEGPLKGLLARAVFVLDENNKVVYSELV 149 (167)
T ss_pred cccccCCceeeEEEEECCCCeEEEEEEC
Confidence 76 66666 68888877643
No 138
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.00 E-value=5.3e-09 Score=65.77 Aligned_cols=84 Identities=17% Similarity=0.252 Sum_probs=62.5
Q ss_pred CCCcEEEEEecCC-ChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCc-----------------------hhHHhhCCccc
Q psy11159 44 ASTPVIVDFFATW-CNPCKTLTPRLEAVIDEMKGKVVLAKVDIDEL-----------------------TDLAMDYEVSA 99 (141)
Q Consensus 44 ~~~~~lv~f~~~~-C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~-----------------------~~~~~~~~v~~ 99 (141)
.+|++++.||+.| |+.|+...+.+.++.++++ ++.++.++.+.. ..+.+.|++..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~ 103 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLI 103 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCee
Confidence 3789999999998 6999999999999999986 688888877531 34556777753
Q ss_pred ------ccEEEEE-eCCeEEEEEecC--CCHHHHHHHH
Q psy11159 100 ------VPVLIAM-KNGKELDRLIGL--QDIDKLKSFI 128 (141)
Q Consensus 100 ------~Pt~~~~-~~g~~~~~~~g~--~~~~~l~~~i 128 (141)
.|+.+++ ++|+++....|. ....++.+.|
T Consensus 104 ~~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~ 141 (143)
T cd03014 104 KDLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAAL 141 (143)
T ss_pred ccCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence 5776666 689988888765 2344555444
No 139
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.99 E-value=7.8e-09 Score=59.44 Aligned_cols=76 Identities=20% Similarity=0.295 Sum_probs=57.4
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCch----hHHhhCC--cccccEEEEEeCCeEEEEEecCCCH
Q psy11159 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT----DLAMDYE--VSAVPVLIAMKNGKELDRLIGLQDI 121 (141)
Q Consensus 48 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~--v~~~Pt~~~~~~g~~~~~~~g~~~~ 121 (141)
.++.|+.+||++|.++...|+++...+. ++.+..+|++.++ ++.+..+ +..+|++++ +|+.+. ..
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~-~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~ig------g~ 72 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD-DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHIG------GC 72 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc-CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEEc------CH
Confidence 4788999999999999999999987764 6888889888653 4544444 578999764 776543 45
Q ss_pred HHHHHHHHHHH
Q psy11159 122 DKLKSFIDNLV 132 (141)
Q Consensus 122 ~~l~~~i~~~~ 132 (141)
+++.+++++..
T Consensus 73 ~~~~~~~~~~~ 83 (85)
T PRK11200 73 TDFEAYVKENL 83 (85)
T ss_pred HHHHHHHHHhc
Confidence 77777777654
No 140
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.98 E-value=1.9e-08 Score=68.44 Aligned_cols=88 Identities=16% Similarity=0.113 Sum_probs=69.3
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCC-----------chhHHhhCCcccccEEEEE-eC-CeE
Q psy11159 45 STPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDE-----------LTDLAMDYEVSAVPVLIAM-KN-GKE 111 (141)
Q Consensus 45 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~-----------~~~~~~~~~v~~~Pt~~~~-~~-g~~ 111 (141)
++..|+.||.+.|++|+.+.|.+..++++++ +.++.|++|- +....++++|..+|+++++ .+ ++.
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg--~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYG--LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence 6688999999999999999999999999996 5555555543 2235678999999988888 33 455
Q ss_pred EEEEecCCCHHHHHHHHHHHHhc
Q psy11159 112 LDRLIGLQDIDKLKSFIDNLVEK 134 (141)
Q Consensus 112 ~~~~~g~~~~~~l~~~i~~~~~~ 134 (141)
..-..|..+.++|.+-|......
T Consensus 221 ~pv~~G~iS~deL~~Ri~~v~t~ 243 (248)
T PRK13703 221 RPLSYGFITQDDLAKRFLNVSTD 243 (248)
T ss_pred EEEeeccCCHHHHHHHHHHHHhc
Confidence 55677999999998888776543
No 141
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.97 E-value=1.6e-08 Score=64.43 Aligned_cols=86 Identities=19% Similarity=0.270 Sum_probs=63.3
Q ss_pred CCCcEEEEEecC-CChhhhhhhHHHHHHHHHhcC-CEEEEEEeCCC---------------------chhHHhhCCcccc
Q psy11159 44 ASTPVIVDFFAT-WCNPCKTLTPRLEAVIDEMKG-KVVLAKVDIDE---------------------LTDLAMDYEVSAV 100 (141)
Q Consensus 44 ~~~~~lv~f~~~-~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~---------------------~~~~~~~~~v~~~ 100 (141)
.+++++|.||+. ||+.|....+.+.++.+++.+ ++.++.+..+. ...+.+.|++...
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 108 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGE 108 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcc
Confidence 478999999975 788999999999998888763 47788777653 2346677887653
Q ss_pred ------------cEEEEE-eCCeEEEEEecCCCHHHHHHHHH
Q psy11159 101 ------------PVLIAM-KNGKELDRLIGLQDIDKLKSFID 129 (141)
Q Consensus 101 ------------Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~ 129 (141)
|+.+++ ++|+++..+.|....+.+.+.++
T Consensus 109 ~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~~~~ 150 (154)
T PRK09437 109 KKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDVVLD 150 (154)
T ss_pred cccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHHHHH
Confidence 555566 79999999998866655444333
No 142
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.95 E-value=2.1e-08 Score=65.93 Aligned_cols=88 Identities=20% Similarity=0.145 Sum_probs=63.5
Q ss_pred CCCcEEEEEe-cCCChhhhhhhHHHHHHHHHhcC-CEEEEEEeCCC-------------------------chhHHhhCC
Q psy11159 44 ASTPVIVDFF-ATWCNPCKTLTPRLEAVIDEMKG-KVVLAKVDIDE-------------------------LTDLAMDYE 96 (141)
Q Consensus 44 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~-------------------------~~~~~~~~~ 96 (141)
.+++++|.|| +.||+.|....+.+.++.+++.+ ++.++.+..|. ...+++.||
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 3789999999 99999999999999998888753 46666665442 225677888
Q ss_pred cc------cccEEEEE-eCCeEEEEEecC----CCHHHHHHHHHHH
Q psy11159 97 VS------AVPVLIAM-KNGKELDRLIGL----QDIDKLKSFIDNL 131 (141)
Q Consensus 97 v~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~i~~~ 131 (141)
+. ..|+.+++ ++|++.....+. .+.+++.+.|+++
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~~ 155 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKAA 155 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 76 35866666 688887765432 3667777776543
No 143
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.91 E-value=2.6e-08 Score=62.98 Aligned_cols=83 Identities=16% Similarity=0.315 Sum_probs=60.4
Q ss_pred CcEEEEEe-cCCChhhhhhhHHHHHHHHHhcC-CEEEEEEeCCC---------------------c--hhHHhhCCcc--
Q psy11159 46 TPVIVDFF-ATWCNPCKTLTPRLEAVIDEMKG-KVVLAKVDIDE---------------------L--TDLAMDYEVS-- 98 (141)
Q Consensus 46 ~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~---------------------~--~~~~~~~~v~-- 98 (141)
+++++.|| ++||+.|....|.+.++.+++++ ++.++.+..+. . ..+.+.|++.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~ 108 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDE 108 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCccc
Confidence 78888888 89999999999999999988863 57777776532 2 4566778877
Q ss_pred --ccc--EEEEE-eCCeEEEEEecCC----CHHHHHHHH
Q psy11159 99 --AVP--VLIAM-KNGKELDRLIGLQ----DIDKLKSFI 128 (141)
Q Consensus 99 --~~P--t~~~~-~~g~~~~~~~g~~----~~~~l~~~i 128 (141)
++| +.+++ ++|+.+....|.. +..++.+.|
T Consensus 109 ~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~ 147 (149)
T cd03018 109 DLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEAL 147 (149)
T ss_pred cCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHh
Confidence 333 66666 6899888888764 344555544
No 144
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.87 E-value=4.5e-08 Score=61.73 Aligned_cols=43 Identities=26% Similarity=0.373 Sum_probs=34.0
Q ss_pred CCcEEEEE-ecCCChhhhhhhHHHHHHHHHhc-CCEEEEEEeCCC
Q psy11159 45 STPVIVDF-FATWCNPCKTLTPRLEAVIDEMK-GKVVLAKVDIDE 87 (141)
Q Consensus 45 ~~~~lv~f-~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~vd~~~ 87 (141)
+++++|.| ++.||+.|+...+.+.++.+++. .++.++.|..+.
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~ 67 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPES 67 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCC
Confidence 45555555 59999999999999999998885 358888887654
No 145
>KOG0913|consensus
Probab=98.87 E-value=1.2e-09 Score=72.51 Aligned_cols=100 Identities=27% Similarity=0.499 Sum_probs=84.6
Q ss_pred eeEEeChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcC-CEEEEEEeCCCchhHHhhCCcccccEEEEE
Q psy11159 28 SFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG-KVVLAKVDIDELTDLAMDYEVSAVPVLIAM 106 (141)
Q Consensus 28 ~~~~~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 106 (141)
.+...+.+++...+. + -.+++|+++||+.|....+.+..++.--.+ ++.+.++|+..|+-+.-+|-+...||+.=.
T Consensus 25 ~~~~~~eenw~~~l~--g-ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHv 101 (248)
T KOG0913|consen 25 KLTRIDEENWKELLT--G-EWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHV 101 (248)
T ss_pred eeEEecccchhhhhc--h-HHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEe
Confidence 555668889988652 2 378999999999999999999998765433 599999999999999999999999998888
Q ss_pred eCCeEEEEEecCCCHHHHHHHHHHH
Q psy11159 107 KNGKELDRLIGLQDIDKLKSFIDNL 131 (141)
Q Consensus 107 ~~g~~~~~~~g~~~~~~l~~~i~~~ 131 (141)
++| +..++.|..+.+++..+++..
T Consensus 102 kDG-eFrrysgaRdk~dfisf~~~r 125 (248)
T KOG0913|consen 102 KDG-EFRRYSGARDKNDFISFEEHR 125 (248)
T ss_pred ecc-ccccccCcccchhHHHHHHhh
Confidence 887 456889999999999998874
No 146
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.86 E-value=2.6e-08 Score=65.18 Aligned_cols=42 Identities=14% Similarity=0.159 Sum_probs=35.8
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhcC-CEEEEEEeCC
Q psy11159 44 ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG-KVVLAKVDID 86 (141)
Q Consensus 44 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~ 86 (141)
.+|++||.|||+||+.|. ..+.|.++.++|++ ++.++.+.++
T Consensus 24 ~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeecc
Confidence 378999999999999997 58899999999874 5888888774
No 147
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.86 E-value=9.7e-08 Score=62.24 Aligned_cols=102 Identities=20% Similarity=0.346 Sum_probs=81.6
Q ss_pred eeEEeChhhHHHHHhcCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcc--cccEEE
Q psy11159 28 SFKVQDMNDFEKKVKNASTP-VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVS--AVPVLI 104 (141)
Q Consensus 28 ~~~~~~~~~~~~~i~~~~~~-~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~--~~Pt~~ 104 (141)
.+...|.+++.... ..+.+ +++.|..........+...+.+++..+++++.|+.+|++..+++.+.+|+. .+|+++
T Consensus 78 ~v~~~t~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~~v 156 (184)
T PF13848_consen 78 LVPELTPENFEKLF-SSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLPALV 156 (184)
T ss_dssp SCEEESTTHHHHHH-STSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSSEEE
T ss_pred cccccchhhHHHHh-cCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCCEEE
Confidence 44555777888754 44554 777777777888899999999999999989999999999989999999998 889999
Q ss_pred EEe--CCeEEEEEecCCCHHHHHHHHHH
Q psy11159 105 AMK--NGKELDRLIGLQDIDKLKSFIDN 130 (141)
Q Consensus 105 ~~~--~g~~~~~~~g~~~~~~l~~~i~~ 130 (141)
++. +++......+..+.+.+.+|+++
T Consensus 157 i~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 157 IFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp EEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred EEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 996 44443444788899999999874
No 148
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.84 E-value=8.5e-08 Score=63.84 Aligned_cols=90 Identities=18% Similarity=0.181 Sum_probs=65.3
Q ss_pred CCCcEEE-EEecCCChhhhhhhHHHHHHHHHhcC-CEEEEEEeCCC---------------------------chhHHhh
Q psy11159 44 ASTPVIV-DFFATWCNPCKTLTPRLEAVIDEMKG-KVVLAKVDIDE---------------------------LTDLAMD 94 (141)
Q Consensus 44 ~~~~~lv-~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~---------------------------~~~~~~~ 94 (141)
.++.+++ .|+++||+.|....+.+.++.+++.+ ++.++.+.+|. +..+++.
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 3666655 58999999999999999998888863 46666665542 2356778
Q ss_pred CCcc------cccEEEEE-eCCeEEEEE----ecCCCHHHHHHHHHHHHh
Q psy11159 95 YEVS------AVPVLIAM-KNGKELDRL----IGLQDIDKLKSFIDNLVE 133 (141)
Q Consensus 95 ~~v~------~~Pt~~~~-~~g~~~~~~----~g~~~~~~l~~~i~~~~~ 133 (141)
||+. .+|+.+++ ++|++.... .+..+.+++.+.|+.+..
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~ 155 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQV 155 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence 8874 47987777 678776554 333588899998887754
No 149
>KOG0911|consensus
Probab=98.84 E-value=3.9e-09 Score=69.67 Aligned_cols=90 Identities=19% Similarity=0.339 Sum_probs=77.8
Q ss_pred eEEeChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeC
Q psy11159 29 FKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKN 108 (141)
Q Consensus 29 ~~~~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 108 (141)
..+.....| +...++..++.||+.||..|..+...+..+++..+ ++.+++.+.++.++++..+.+...|++.++..
T Consensus 4 ~~i~~~~~f---~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~-~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~ 79 (227)
T KOG0911|consen 4 QFIVFQEQF---LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK-NAQFLKLEAEEFPEISNLIAVEAVPYFVFFFL 79 (227)
T ss_pred eeehhHHHH---HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh-hheeeeehhhhhhHHHHHHHHhcCceeeeeec
Confidence 345555666 33368899999999999999999999999999885 79999999999999999999999999999999
Q ss_pred CeEEEEEecCCCHH
Q psy11159 109 GKELDRLIGLQDID 122 (141)
Q Consensus 109 g~~~~~~~g~~~~~ 122 (141)
|+.+.+..|.....
T Consensus 80 ~~~v~~l~~~~~~~ 93 (227)
T KOG0911|consen 80 GEKVDRLSGADPPF 93 (227)
T ss_pred chhhhhhhccCcHH
Confidence 99999988884443
No 150
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.82 E-value=7.9e-08 Score=72.96 Aligned_cols=83 Identities=19% Similarity=0.415 Sum_probs=69.3
Q ss_pred HhcCCCcE-EEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeEEEEEecCC
Q psy11159 41 VKNASTPV-IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQ 119 (141)
Q Consensus 41 i~~~~~~~-lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~ 119 (141)
++.-++++ +-.|.+++|++|......+.+++...+ ++..-.+|....+++.++|+|.++|++++ ||+.+ +.|..
T Consensus 471 i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~-~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~~--~~G~~ 545 (555)
T TIGR03143 471 IKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-NVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQV--YFGKK 545 (555)
T ss_pred HHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-CceEEEEECcccHHHHHhCCceecCEEEE--CCEEE--EeeCC
Confidence 33335665 556689999999999999999999987 69999999999999999999999999887 67655 44777
Q ss_pred CHHHHHHHH
Q psy11159 120 DIDKLKSFI 128 (141)
Q Consensus 120 ~~~~l~~~i 128 (141)
+.+++..+|
T Consensus 546 ~~~~~~~~~ 554 (555)
T TIGR03143 546 TIEEMLELI 554 (555)
T ss_pred CHHHHHHhh
Confidence 999998876
No 151
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.82 E-value=3.1e-08 Score=62.07 Aligned_cols=43 Identities=26% Similarity=0.471 Sum_probs=36.9
Q ss_pred CCCcEEEEEecCCChh-hhhhhHHHHHHHHHhcC----CEEEEEEeCC
Q psy11159 44 ASTPVIVDFFATWCNP-CKTLTPRLEAVIDEMKG----KVVLAKVDID 86 (141)
Q Consensus 44 ~~~~~lv~f~~~~C~~-C~~~~~~l~~~~~~~~~----~~~~~~vd~~ 86 (141)
.++++++.||++||+. |....+.+.++.+++.+ ++.++.+..+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 4789999999999997 99999999999988864 3888888754
No 152
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.81 E-value=1.5e-07 Score=61.84 Aligned_cols=89 Identities=15% Similarity=0.151 Sum_probs=66.1
Q ss_pred CCCcEEEEEe-cCCChhhhhhhHHHHHHHHHhcC-CEEEEEEeCCC-------------------------chhHHhhCC
Q psy11159 44 ASTPVIVDFF-ATWCNPCKTLTPRLEAVIDEMKG-KVVLAKVDIDE-------------------------LTDLAMDYE 96 (141)
Q Consensus 44 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~-------------------------~~~~~~~~~ 96 (141)
.++++++.|| +.||+.|....+.+.+..+++.+ ++.++.++.|. +..+++.||
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 3678999999 99999999999999999888853 46666665443 346778888
Q ss_pred cc----cc--cEEEEE-eCCeEEEEEecC----CCHHHHHHHHHHHH
Q psy11159 97 VS----AV--PVLIAM-KNGKELDRLIGL----QDIDKLKSFIDNLV 132 (141)
Q Consensus 97 v~----~~--Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~i~~~~ 132 (141)
+. ++ |+.+++ ++|+++...... .+.+++.+.|+.+.
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq 156 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ 156 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhh
Confidence 83 56 877777 688877654332 47788888887665
No 153
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=98.81 E-value=5e-08 Score=66.97 Aligned_cols=83 Identities=23% Similarity=0.404 Sum_probs=60.7
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeC---------------------------------------
Q psy11159 45 STPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDI--------------------------------------- 85 (141)
Q Consensus 45 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~--------------------------------------- 85 (141)
.+.+++.|+.+.||+|+++.+.+.++.+. +++.+..+..
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~ 194 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDS--GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP 194 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhc--CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence 56789999999999999999998887654 2455544431
Q ss_pred -----------CCchhHHhhCCcccccEEEEEeCCeEEEEEecCCCHHHHHHHHH
Q psy11159 86 -----------DELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129 (141)
Q Consensus 86 -----------~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~ 129 (141)
+++..+.+++|+.++|++++-.+...+....|..+.++|.+.+.
T Consensus 195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhC
Confidence 00223777899999999887643235556789989999888764
No 154
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.80 E-value=2.6e-08 Score=66.00 Aligned_cols=76 Identities=17% Similarity=0.341 Sum_probs=55.8
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeC---------------------------------------
Q psy11159 45 STPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDI--------------------------------------- 85 (141)
Q Consensus 45 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~--------------------------------------- 85 (141)
++..++.|+.+.|++|+++.+.+.+ ..+++.+..+..
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~ 152 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAA 152 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcc
Confidence 6789999999999999999998876 122333333321
Q ss_pred ------CCchhHHhhCCcccccEEEEEeCCeEEEEEecCCCHHHHHHHH
Q psy11159 86 ------DELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFI 128 (141)
Q Consensus 86 ------~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i 128 (141)
+++..+++++||.++|+++ +.+|+. ..|..+.++|.++|
T Consensus 153 ~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 153 SCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred ccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence 1233578899999999987 777865 56888888887764
No 155
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.80 E-value=5.8e-08 Score=55.94 Aligned_cols=74 Identities=19% Similarity=0.258 Sum_probs=53.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCch----hHHhhCC--cccccEEEEEeCCeEEEEEecCCCHH
Q psy11159 49 IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT----DLAMDYE--VSAVPVLIAMKNGKELDRLIGLQDID 122 (141)
Q Consensus 49 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~--v~~~Pt~~~~~~g~~~~~~~g~~~~~ 122 (141)
++.|+.+|||+|.+++..|.++...+. ++.+..+|++... ++.+..+ ...+|++++ +|+.+. ..+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~-~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~ig------G~~ 72 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA-DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHVG------GCT 72 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC-CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEec------CHH
Confidence 578999999999999999998876554 4777788887532 4555556 378999854 665432 457
Q ss_pred HHHHHHHHH
Q psy11159 123 KLKSFIDNL 131 (141)
Q Consensus 123 ~l~~~i~~~ 131 (141)
+|.+++++.
T Consensus 73 dl~~~~~~~ 81 (86)
T TIGR02183 73 DFEQLVKEN 81 (86)
T ss_pred HHHHHHHhc
Confidence 777776663
No 156
>PRK15000 peroxidase; Provisional
Probab=98.79 E-value=2e-07 Score=62.00 Aligned_cols=89 Identities=16% Similarity=0.302 Sum_probs=67.1
Q ss_pred CCCcEEEEEec-CCChhhhhhhHHHHHHHHHhcC-CEEEEEEeCCC----------------------------chhHHh
Q psy11159 44 ASTPVIVDFFA-TWCNPCKTLTPRLEAVIDEMKG-KVVLAKVDIDE----------------------------LTDLAM 93 (141)
Q Consensus 44 ~~~~~lv~f~~-~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~ 93 (141)
.++++++.||+ +||+.|....+.+.+..+++.+ ++.++.+.+|. +..+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 47899999999 5999999999999999988863 47777776652 224666
Q ss_pred hCCcc------cccEEEEE-eCCeEEEEEecC----CCHHHHHHHHHHHH
Q psy11159 94 DYEVS------AVPVLIAM-KNGKELDRLIGL----QDIDKLKSFIDNLV 132 (141)
Q Consensus 94 ~~~v~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~i~~~~ 132 (141)
.||+. ..|+.+++ ++|++.....+. .+.+++.+.++.+.
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al~ 162 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDALQ 162 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 78876 68977777 688888766653 36678888876654
No 157
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.78 E-value=7.9e-08 Score=60.04 Aligned_cols=77 Identities=17% Similarity=0.203 Sum_probs=58.8
Q ss_pred CCCcEEEEEe-cCCChhhhhhhHHHHHHHHHhc-CCEEEEEEeCCC----------------------chhHHhhCCccc
Q psy11159 44 ASTPVIVDFF-ATWCNPCKTLTPRLEAVIDEMK-GKVVLAKVDIDE----------------------LTDLAMDYEVSA 99 (141)
Q Consensus 44 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~vd~~~----------------------~~~~~~~~~v~~ 99 (141)
.+++++|.|| +.||+.|....+.+.++.+++. +++.++.+..+. ...+.+.|++..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 4789999999 7899999999999999988874 357777776543 224667777776
Q ss_pred cc---------EEEEE-eCCeEEEEEecCCC
Q psy11159 100 VP---------VLIAM-KNGKELDRLIGLQD 120 (141)
Q Consensus 100 ~P---------t~~~~-~~g~~~~~~~g~~~ 120 (141)
.| +++++ ++|+++.+..|...
T Consensus 101 ~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 101 EKSAGGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred ccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence 65 56666 57888888888743
No 158
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.76 E-value=1e-07 Score=52.64 Aligned_cols=68 Identities=24% Similarity=0.432 Sum_probs=47.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhC----CcccccEEEEEeCCeEEEEEecCCCHHHH
Q psy11159 49 IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDY----EVSAVPVLIAMKNGKELDRLIGLQDIDKL 124 (141)
Q Consensus 49 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~----~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l 124 (141)
++.|+++||++|+.+...+.+. ++.+..++++.++...+.+ ++.++|++++ +|+ ...|. +.+.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~---~i~g~-~~~~l 69 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE---HLSGF-RPDKL 69 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE---EEecC-CHHHH
Confidence 5779999999999988877662 4677777887665444333 6889999865 453 44454 66677
Q ss_pred HHHH
Q psy11159 125 KSFI 128 (141)
Q Consensus 125 ~~~i 128 (141)
.+++
T Consensus 70 ~~~~ 73 (73)
T cd02976 70 RALL 73 (73)
T ss_pred HhhC
Confidence 6653
No 159
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=98.75 E-value=1.2e-07 Score=56.34 Aligned_cols=92 Identities=18% Similarity=0.250 Sum_probs=69.0
Q ss_pred EEeChhhHHHHHhcCCCcEEEEEecCCC---hhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEE
Q psy11159 30 KVQDMNDFEKKVKNASTPVIVDFFATWC---NPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAM 106 (141)
Q Consensus 30 ~~~~~~~~~~~i~~~~~~~lv~f~~~~C---~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 106 (141)
...+.++++..+.. +...+ .|++..| +.+....-.+.++.+.+++.+....++......+..+||+..+|+++++
T Consensus 12 ~~vd~~~ld~~l~~-~~~~v-lf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLvf~ 89 (107)
T PF07449_consen 12 PRVDADTLDAFLAA-PGDAV-LFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALVFF 89 (107)
T ss_dssp EEE-CCCHHHHHHC-CSCEE-EEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEEEE
T ss_pred eeechhhHHHHHhC-CCcEE-EEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEEEE
Confidence 33456667776654 33344 4555554 4455555588999999998888888887778899999999999999999
Q ss_pred eCCeEEEEEecCCCHHH
Q psy11159 107 KNGKELDRLIGLQDIDK 123 (141)
Q Consensus 107 ~~g~~~~~~~g~~~~~~ 123 (141)
++|+.+....|..+.++
T Consensus 90 R~g~~lG~i~gi~dW~d 106 (107)
T PF07449_consen 90 RDGRYLGAIEGIRDWAD 106 (107)
T ss_dssp ETTEEEEEEESSSTHHH
T ss_pred ECCEEEEEecCeecccc
Confidence 99999999999888765
No 160
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.71 E-value=1.3e-07 Score=59.76 Aligned_cols=39 Identities=33% Similarity=0.547 Sum_probs=31.5
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEE
Q psy11159 44 ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKV 83 (141)
Q Consensus 44 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v 83 (141)
+.++++++|+.++||+|+.+.+.+.++..+++ ++.+...
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~-~~~~~~~ 42 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP-DVRVVFK 42 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC-CceEEEE
Confidence 36788999999999999999999999887775 4544433
No 161
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.70 E-value=2.1e-07 Score=52.71 Aligned_cols=69 Identities=19% Similarity=0.339 Sum_probs=48.3
Q ss_pred CcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCc---hhHHhhCCcccccEEEEEeCCeEEEEEecCCCHH
Q psy11159 46 TPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDEL---TDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDID 122 (141)
Q Consensus 46 ~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~---~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~ 122 (141)
+.-++.|+.+||++|++.+..|.+. ++.+..+|++++ .++.+..|...+|.+++ +|+.+. | .+
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~ig---G---~~ 72 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKLIG---G---SD 72 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEEEc---C---HH
Confidence 3447789999999999999888643 466777777765 34555568899999754 776433 2 35
Q ss_pred HHHHHH
Q psy11159 123 KLKSFI 128 (141)
Q Consensus 123 ~l~~~i 128 (141)
++.++|
T Consensus 73 ~l~~~l 78 (79)
T TIGR02190 73 ELEAYL 78 (79)
T ss_pred HHHHHh
Confidence 555554
No 162
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.69 E-value=1.2e-06 Score=54.29 Aligned_cols=109 Identities=18% Similarity=0.266 Sum_probs=80.7
Q ss_pred eeeEEeChhhHHHHHhcCCCcEEEEEecC--CCh-hh-hhhhHHHHHHHHHhcCC-EEEEEEeCCCchhHHhhCCccc--
Q psy11159 27 TSFKVQDMNDFEKKVKNASTPVIVDFFAT--WCN-PC-KTLTPRLEAVIDEMKGK-VVLAKVDIDELTDLAMDYEVSA-- 99 (141)
Q Consensus 27 ~~~~~~~~~~~~~~i~~~~~~~lv~f~~~--~C~-~C-~~~~~~l~~~~~~~~~~-~~~~~vd~~~~~~~~~~~~v~~-- 99 (141)
.++++.+.+.+.+. ...++.-+|-|.-. .|. .+ ......+.++++.++++ +.|+++|.++...+.+.||+.+
T Consensus 3 ~~~~l~~~~~~~~~-C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~ 81 (130)
T cd02983 3 EIIELTSEDVFEET-CEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFG 81 (130)
T ss_pred ceEEecCHHHHHhh-ccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccC
Confidence 56677677666664 33355556656432 232 23 46688899999999999 9999999999999999999854
Q ss_pred ccEEEEEeCCeEEEE-EecCCCHHHHHHHHHHHHhccc
Q psy11159 100 VPVLIAMKNGKELDR-LIGLQDIDKLKSFIDNLVEKQS 136 (141)
Q Consensus 100 ~Pt~~~~~~g~~~~~-~~g~~~~~~l~~~i~~~~~~~~ 136 (141)
+|+++++...+..+. ..|..+.+.+.+|+++.++...
T Consensus 82 ~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 82 YPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred CCEEEEEecccCccccccCccCHHHHHHHHHHHHcCCc
Confidence 899888844332333 6788899999999999987643
No 163
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.69 E-value=3e-07 Score=69.31 Aligned_cols=86 Identities=16% Similarity=0.250 Sum_probs=70.9
Q ss_pred HhcCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeEEEEEecCC
Q psy11159 41 VKNASTP-VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQ 119 (141)
Q Consensus 41 i~~~~~~-~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~ 119 (141)
++.-+++ .+..|+++.|++|......+.+++...+ ++..-.+|...++++.++|++.++|++++ +|+.. +.|..
T Consensus 111 i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~-~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~--~~g~~ 185 (517)
T PRK15317 111 IKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP-NITHTMIDGALFQDEVEARNIMAVPTVFL--NGEEF--GQGRM 185 (517)
T ss_pred HHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC-CceEEEEEchhCHhHHHhcCCcccCEEEE--CCcEE--EecCC
Confidence 3333444 4889999999999999999999999877 79999999999999999999999999866 66543 55877
Q ss_pred CHHHHHHHHHHH
Q psy11159 120 DIDKLKSFIDNL 131 (141)
Q Consensus 120 ~~~~l~~~i~~~ 131 (141)
+.+++.+.+.+.
T Consensus 186 ~~~~~~~~~~~~ 197 (517)
T PRK15317 186 TLEEILAKLDTG 197 (517)
T ss_pred CHHHHHHHHhcc
Confidence 888888777653
No 164
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.67 E-value=1.6e-07 Score=50.33 Aligned_cols=55 Identities=27% Similarity=0.380 Sum_probs=42.1
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchh----HHhhCCcccccEEEEEeCCeE
Q psy11159 49 IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTD----LAMDYEVSAVPVLIAMKNGKE 111 (141)
Q Consensus 49 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g~~ 111 (141)
++.|+.++|++|...+..|++. ++.+-.+|++..++ +.+..|..++|++++ +|+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEE
Confidence 5789999999999998888443 57788888887754 333449999999776 7764
No 165
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=98.63 E-value=1.2e-06 Score=55.97 Aligned_cols=82 Identities=26% Similarity=0.482 Sum_probs=64.0
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHh--cCCEEEEEEeCCC----------------------------------
Q psy11159 44 ASTPVIVDFFATWCNPCKTLTPRLEAVIDEM--KGKVVLAKVDIDE---------------------------------- 87 (141)
Q Consensus 44 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~--~~~~~~~~vd~~~---------------------------------- 87 (141)
+.+++|+.|++..||+|..+.+.+.++.+++ ++++.+...+...
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQE 90 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCH
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 3578899999999999999999999999998 6788888776421
Q ss_pred ----------------------------------chhHHhhCCcccccEEEEEeCCeEEEEEecCCCHHHHHHHHHH
Q psy11159 88 ----------------------------------LTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDN 130 (141)
Q Consensus 88 ----------------------------------~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 130 (141)
.....++++|.++||+++ ||+.+ .|..+.+++.++|++
T Consensus 91 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~~---~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 91 NFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKYV---VGPYTIEELKELIDK 162 (162)
T ss_dssp STSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCEE---ETTTSHHHHHHHHHH
T ss_pred ccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEEe---CCCCCHHHHHHHHcC
Confidence 002445778999999888 88764 678899999999875
No 166
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.62 E-value=3.9e-07 Score=51.71 Aligned_cols=58 Identities=22% Similarity=0.275 Sum_probs=42.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCch-----hHHhhCCcccccEEEEEeCCeEE
Q psy11159 49 IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT-----DLAMDYEVSAVPVLIAMKNGKEL 112 (141)
Q Consensus 49 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~-----~~~~~~~v~~~Pt~~~~~~g~~~ 112 (141)
++.|+++|||+|..+...+.++... ..++.++.+.+. .+.+..|..++|+++ .+|+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~--~~g~~i 64 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK----PAVVELDQHEDGSEIQDYLQELTGQRTVPNVF--IGGKFI 64 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC----cEEEEEeCCCChHHHHHHHHHHhCCCCCCeEE--ECCEEE
Confidence 5779999999999999999887553 456677766542 355666889999963 367553
No 167
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.58 E-value=1.4e-06 Score=58.58 Aligned_cols=88 Identities=13% Similarity=0.176 Sum_probs=64.5
Q ss_pred CCcE-EEEEecCCChhhhhhhHHHHHHHHHhcC-CEEEEEEeCCC---------------------------chhHHhhC
Q psy11159 45 STPV-IVDFFATWCNPCKTLTPRLEAVIDEMKG-KVVLAKVDIDE---------------------------LTDLAMDY 95 (141)
Q Consensus 45 ~~~~-lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~---------------------------~~~~~~~~ 95 (141)
++++ |+.|+++||+.|....+.+.++.+++.+ ++.++.+++|. +..+++.|
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~y 107 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQL 107 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHc
Confidence 5654 6789999999999999999999998863 57777776654 22466778
Q ss_pred Ccc-------cccEEEEE-eCCeEEEEEecC----CCHHHHHHHHHHHH
Q psy11159 96 EVS-------AVPVLIAM-KNGKELDRLIGL----QDIDKLKSFIDNLV 132 (141)
Q Consensus 96 ~v~-------~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~i~~~~ 132 (141)
|+. ..|+.+++ ++|++....... .+.+++.+.|+.+.
T Consensus 108 g~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~lq 156 (215)
T PRK13599 108 GMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKALQ 156 (215)
T ss_pred CCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHhh
Confidence 863 57887777 678876654322 36788888887653
No 168
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.57 E-value=7.3e-07 Score=49.50 Aligned_cols=66 Identities=15% Similarity=0.281 Sum_probs=46.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchh---HHhhCCcccccEEEEEeCCeEEEEEecCCCHHHHH
Q psy11159 49 IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTD---LAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLK 125 (141)
Q Consensus 49 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~ 125 (141)
++.|..+||++|.+.+..|.+. ++.+..+|++++.. +....|...+|.+++ +|+.+. ..+++.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi--~g~~ig------g~~~l~ 68 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTGAMTVPQVFI--DGELIG------GSDDLE 68 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhCCCCcCeEEE--CCEEEe------CHHHHH
Confidence 6789999999999998888753 46677777776543 334458889999744 676543 356676
Q ss_pred HHH
Q psy11159 126 SFI 128 (141)
Q Consensus 126 ~~i 128 (141)
+++
T Consensus 69 ~~l 71 (72)
T cd03029 69 KYF 71 (72)
T ss_pred HHh
Confidence 665
No 169
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=98.56 E-value=9.1e-07 Score=59.13 Aligned_cols=40 Identities=18% Similarity=0.494 Sum_probs=32.7
Q ss_pred CCcEEEEEecCCChhhhhhhHHH---HHHHHHhcCCEEEEEEe
Q psy11159 45 STPVIVDFFATWCNPCKTLTPRL---EAVIDEMKGKVVLAKVD 84 (141)
Q Consensus 45 ~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vd 84 (141)
+++.+++|++..||+|..+.+.+ +.+.+.+++++.++.+.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~ 79 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYH 79 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEec
Confidence 57889999999999999999876 78888888766655443
No 170
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.55 E-value=2.4e-06 Score=58.89 Aligned_cols=89 Identities=11% Similarity=0.185 Sum_probs=64.8
Q ss_pred CCCcEEEEEe-cCCChhhhhhhHHHHHHHHHhcC-CEEEEEEeCCC----------------------------chhHHh
Q psy11159 44 ASTPVIVDFF-ATWCNPCKTLTPRLEAVIDEMKG-KVVLAKVDIDE----------------------------LTDLAM 93 (141)
Q Consensus 44 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~ 93 (141)
.++++++.|| ++||+.|....+.+.+..+++.+ ++.++.+.+|. +..+++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 3667888888 89999999999999999888863 46666665543 235777
Q ss_pred hCCcc-----cccEEEEE-eCCeEEEEEec----CCCHHHHHHHHHHHH
Q psy11159 94 DYEVS-----AVPVLIAM-KNGKELDRLIG----LQDIDKLKSFIDNLV 132 (141)
Q Consensus 94 ~~~v~-----~~Pt~~~~-~~g~~~~~~~g----~~~~~~l~~~i~~~~ 132 (141)
.||+. ..|+.+++ ++|++...... ..+.+++.+.|+.+.
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~alq 225 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQ 225 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhc
Confidence 88875 47877777 58887775522 247788888887664
No 171
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.55 E-value=1.5e-06 Score=57.90 Aligned_cols=88 Identities=16% Similarity=0.158 Sum_probs=62.7
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhcC-CEEEEEEeCCC---------------------------chhHHhhCC
Q psy11159 46 TP-VIVDFFATWCNPCKTLTPRLEAVIDEMKG-KVVLAKVDIDE---------------------------LTDLAMDYE 96 (141)
Q Consensus 46 ~~-~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~---------------------------~~~~~~~~~ 96 (141)
++ +|+.|+++||+.|....+.+.++.+++.+ ++.++.+.+|. +..+++.||
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg 105 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLG 105 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcC
Confidence 54 45589999999999999999999988863 47777776653 235677888
Q ss_pred cc----cc----cEEEEE-eCCeEEEEEecC----CCHHHHHHHHHHHHh
Q psy11159 97 VS----AV----PVLIAM-KNGKELDRLIGL----QDIDKLKSFIDNLVE 133 (141)
Q Consensus 97 v~----~~----Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~i~~~~~ 133 (141)
+. +. |+.+++ ++|++.....+. .+.+++.+.|+++..
T Consensus 106 ~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq~ 155 (203)
T cd03016 106 MIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQL 155 (203)
T ss_pred CccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence 75 23 345555 788877766553 367788888877643
No 172
>PRK13189 peroxiredoxin; Provisional
Probab=98.55 E-value=2e-06 Score=58.10 Aligned_cols=89 Identities=16% Similarity=0.201 Sum_probs=62.9
Q ss_pred CCCcE-EEEEecCCChhhhhhhHHHHHHHHHhcC-CEEEEEEeCCC---------------------------chhHHhh
Q psy11159 44 ASTPV-IVDFFATWCNPCKTLTPRLEAVIDEMKG-KVVLAKVDIDE---------------------------LTDLAMD 94 (141)
Q Consensus 44 ~~~~~-lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~---------------------------~~~~~~~ 94 (141)
.++++ |+.|+++||+.|....+.+.++.+++.+ ++.++.+.+|. ...+++.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 36645 4577899999999999999999888863 46666666542 2246677
Q ss_pred CCcc-------cccEEEEE-eCCeEEEEEec----CCCHHHHHHHHHHHH
Q psy11159 95 YEVS-------AVPVLIAM-KNGKELDRLIG----LQDIDKLKSFIDNLV 132 (141)
Q Consensus 95 ~~v~-------~~Pt~~~~-~~g~~~~~~~g----~~~~~~l~~~i~~~~ 132 (141)
||+. ..|+.+++ ++|++.....+ ..+.+++.+.|+.+.
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 163 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQ 163 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 7865 35766777 68887665542 236788888887664
No 173
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=98.55 E-value=1.2e-06 Score=56.77 Aligned_cols=40 Identities=30% Similarity=0.634 Sum_probs=34.0
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEE
Q psy11159 44 ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKV 83 (141)
Q Consensus 44 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v 83 (141)
.+++.++.|+...||+|..+.+.+.++..++++++.+..+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~ 53 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKV 53 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEc
Confidence 4678999999999999999999999998888766665533
No 174
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.55 E-value=2.4e-06 Score=57.43 Aligned_cols=89 Identities=16% Similarity=0.182 Sum_probs=63.6
Q ss_pred CCCcEEE-EEecCCChhhhhhhHHHHHHHHHhcC-CEEEEEEeCCC---------------------------chhHHhh
Q psy11159 44 ASTPVIV-DFFATWCNPCKTLTPRLEAVIDEMKG-KVVLAKVDIDE---------------------------LTDLAMD 94 (141)
Q Consensus 44 ~~~~~lv-~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~---------------------------~~~~~~~ 94 (141)
.+|++++ .|+++||+.|....+.|.+..+++.+ ++.++.+++|. +..+++.
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 3666655 78899999999999999999988853 47777776653 2246667
Q ss_pred CCcc-------cccEEEEE-eCCeEEEEEecC----CCHHHHHHHHHHHH
Q psy11159 95 YEVS-------AVPVLIAM-KNGKELDRLIGL----QDIDKLKSFIDNLV 132 (141)
Q Consensus 95 ~~v~-------~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~i~~~~ 132 (141)
||+. ..|+.+++ ++|++.....+. .+.+++.+.|+.+.
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 161 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRALQ 161 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 7763 35766666 688777755433 37788888887764
No 175
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.54 E-value=6.7e-07 Score=49.69 Aligned_cols=66 Identities=27% Similarity=0.429 Sum_probs=47.4
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhC---CcccccEEEEEeCCeEEEEEecCCCHHHHHH
Q psy11159 50 VDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDY---EVSAVPVLIAMKNGKELDRLIGLQDIDKLKS 126 (141)
Q Consensus 50 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~---~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~ 126 (141)
..|+.++|++|+..+..|.+. ++.+-.+|++++++....+ |..++|++++ +|+. ...|. +.+.|.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~~--~~~G~-~~~~~~~ 70 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGDL--SWSGF-RPDKLKA 70 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCCc--EEecc-CHHHHHh
Confidence 568899999999999888752 6788888988877554444 7888999755 4432 34454 6666654
No 176
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.53 E-value=1.7e-06 Score=52.15 Aligned_cols=101 Identities=18% Similarity=0.190 Sum_probs=75.5
Q ss_pred EeChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHH---hcCCEEEEEEeCCCchhHHhhCCccc--ccEEEE
Q psy11159 31 VQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDE---MKGKVVLAKVDIDELTDLAMDYEVSA--VPVLIA 105 (141)
Q Consensus 31 ~~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~---~~~~~~~~~vd~~~~~~~~~~~~v~~--~Pt~~~ 105 (141)
..+.++... +.+.+.+..+.|+ .-..-..+...+.+++++ +++++.|+.+|.+......+.+|+.+ +|.+.+
T Consensus 3 e~t~e~~~~-~~~~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i 79 (111)
T cd03072 3 EITFENAEE-LTEEGLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAI 79 (111)
T ss_pred ccccccHHH-HhcCCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEE
Confidence 345566665 4455666666677 222346788899999999 99999999999999877899999997 899888
Q ss_pred EeCCe-EEEE-EecCCCHHHHHHHHHHHHhc
Q psy11159 106 MKNGK-ELDR-LIGLQDIDKLKSFIDNLVEK 134 (141)
Q Consensus 106 ~~~g~-~~~~-~~g~~~~~~l~~~i~~~~~~ 134 (141)
..... .... ..+..+.+.|.+|+++.++.
T Consensus 80 ~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~G 110 (111)
T cd03072 80 DSFRHMYLFPDFEDVYVPGKLKQFVLDLHSG 110 (111)
T ss_pred EcchhcCcCCCCccccCHHHHHHHHHHHhcC
Confidence 84322 2222 55677899999999998763
No 177
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.49 E-value=4.2e-06 Score=47.60 Aligned_cols=72 Identities=17% Similarity=0.266 Sum_probs=53.3
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHH---hhCCcccccEEEEEeCCeEEEEEecCCCHHHHH
Q psy11159 49 IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLA---MDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLK 125 (141)
Q Consensus 49 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~---~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~ 125 (141)
+..|+.+||++|...+..|.+. ++.|-.+|++++++.. +..|...+|++++ ++. ...|+ +.+.|.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~------gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~---~~~Gf-~~~~l~ 70 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR------GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL---SWSGF-RPDMIN 70 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE---EEecC-CHHHHH
Confidence 6779999999999998888552 6888889998877532 3347788999865 442 34466 888888
Q ss_pred HHHHHHH
Q psy11159 126 SFIDNLV 132 (141)
Q Consensus 126 ~~i~~~~ 132 (141)
+++-...
T Consensus 71 ~~~~~~~ 77 (81)
T PRK10329 71 RLHPAPH 77 (81)
T ss_pred HHHHhhh
Confidence 8876654
No 178
>PHA03050 glutaredoxin; Provisional
Probab=98.48 E-value=1.7e-06 Score=51.85 Aligned_cols=60 Identities=17% Similarity=0.147 Sum_probs=41.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCC---c----hhHHhhCCcccccEEEEEeCCeEEE
Q psy11159 49 IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDE---L----TDLAMDYEVSAVPVLIAMKNGKELD 113 (141)
Q Consensus 49 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~---~----~~~~~~~~v~~~Pt~~~~~~g~~~~ 113 (141)
++.|..+|||+|++.+..|.+..-..+ .|-.+|+++ . .++.+..|...+|++++ +|+.+.
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~~iG 81 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKTSIG 81 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCEEEe
Confidence 677999999999999988877643322 344555554 2 23555567889999755 676554
No 179
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.48 E-value=1.4e-06 Score=48.47 Aligned_cols=57 Identities=19% Similarity=0.301 Sum_probs=43.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchh----HHhhCCcccccEEEEEeCCeEEE
Q psy11159 49 IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTD----LAMDYEVSAVPVLIAMKNGKELD 113 (141)
Q Consensus 49 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~ 113 (141)
++.|+.++|++|++++..|++. ++.+..+|++++++ +.+..+-..+|++++ +|+.+.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i--~~~~iG 63 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK------GLPYVEINIDIFPERKAELEERTGSSVVPQIFF--NEKLVG 63 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 5679999999999999888763 57778888887664 555557788899755 676554
No 180
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.46 E-value=3.7e-06 Score=63.45 Aligned_cols=82 Identities=16% Similarity=0.253 Sum_probs=68.6
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeEEEEEecCCCHHHH
Q psy11159 45 STPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKL 124 (141)
Q Consensus 45 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l 124 (141)
+...+..|+++.||+|......+.+++...+ ++..-.+|....+++.++|++.++|++++ +|+.. +.|..+.+++
T Consensus 117 ~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p-~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~--~~g~~~~~~~ 191 (515)
T TIGR03140 117 GPLHFETYVSLTCQNCPDVVQALNQMALLNP-NISHTMIDGALFQDEVEALGIQGVPAVFL--NGEEF--HNGRMDLAEL 191 (515)
T ss_pred CCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC-CceEEEEEchhCHHHHHhcCCcccCEEEE--CCcEE--EecCCCHHHH
Confidence 3445889999999999999999999999887 78888899999999999999999999876 66543 5577788888
Q ss_pred HHHHHHH
Q psy11159 125 KSFIDNL 131 (141)
Q Consensus 125 ~~~i~~~ 131 (141)
.+.+...
T Consensus 192 ~~~l~~~ 198 (515)
T TIGR03140 192 LEKLEET 198 (515)
T ss_pred HHHHhhc
Confidence 7776554
No 181
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.45 E-value=1.5e-06 Score=47.59 Aligned_cols=57 Identities=26% Similarity=0.366 Sum_probs=42.0
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhH----HhhCCcccccEEEEEeCCeEEE
Q psy11159 49 IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDL----AMDYEVSAVPVLIAMKNGKELD 113 (141)
Q Consensus 49 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~g~~~~ 113 (141)
++.|+++||++|+.++..|.+. ++.+..+|++.+++. .+..+...+|++++ +|+.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~------~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~--~~~~ig 62 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL------GIEFEEIDILEDGELREELKELSGWPTVPQIFI--NGEFIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 5679999999999999888876 366778888776643 33446778898644 776554
No 182
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.43 E-value=9.4e-07 Score=52.22 Aligned_cols=57 Identities=26% Similarity=0.293 Sum_probs=39.1
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchh-------HHhhCCcccccEEEEEeCCeEEE
Q psy11159 49 IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTD-------LAMDYEVSAVPVLIAMKNGKELD 113 (141)
Q Consensus 49 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~-------~~~~~~v~~~Pt~~~~~~g~~~~ 113 (141)
++.|..+|||+|++++..|.+. ++.+..+|+++.++ +.+..|...+|.+++ +|+.+.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi--~g~~iG 73 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV--GGKLVG 73 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE--CCEEEc
Confidence 6779999999999998877665 34455666665432 333346789999743 775554
No 183
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.43 E-value=1.5e-06 Score=49.02 Aligned_cols=56 Identities=14% Similarity=0.290 Sum_probs=40.6
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhH----HhhCCcccccEEEEEeCCeEE
Q psy11159 49 IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDL----AMDYEVSAVPVLIAMKNGKEL 112 (141)
Q Consensus 49 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~g~~~ 112 (141)
++.|+.+||++|...+..|.+. ++.+-.+|++.+++. .+..+...+|++++ +|+.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i--~g~~i 60 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI--GDVHV 60 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 3578999999999999888763 466677777776544 33447788999744 67544
No 184
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.43 E-value=9.3e-07 Score=50.31 Aligned_cols=78 Identities=28% Similarity=0.368 Sum_probs=60.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeC--CeEEEEEecCCCHHHHHH
Q psy11159 49 IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKN--GKELDRLIGLQDIDKLKS 126 (141)
Q Consensus 49 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~--g~~~~~~~g~~~~~~l~~ 126 (141)
++.|+.+.|+-|..+...+.++.... .+.+-.+|+++++++..+|+. .+|.+.+-.. ........+..+.+.+.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~--~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~ 78 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF--PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLRA 78 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS--TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc--CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHHH
Confidence 67899999999999999999876665 489999999999999999995 7999666321 011355667889999999
Q ss_pred HHH
Q psy11159 127 FID 129 (141)
Q Consensus 127 ~i~ 129 (141)
||+
T Consensus 79 ~L~ 81 (81)
T PF05768_consen 79 WLE 81 (81)
T ss_dssp HHH
T ss_pred HhC
Confidence 985
No 185
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.37 E-value=2.8e-06 Score=47.38 Aligned_cols=56 Identities=16% Similarity=0.217 Sum_probs=40.8
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHH----hhCCcc-cccEEEEEeCCeEE
Q psy11159 49 IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLA----MDYEVS-AVPVLIAMKNGKEL 112 (141)
Q Consensus 49 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~v~-~~Pt~~~~~~g~~~ 112 (141)
++.|+.++|++|..++..|.+. ++.+-.+|++.+++.. +..+.. ++|++++ +|+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i--~g~~i 62 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI--GDVHI 62 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE--CCEEE
Confidence 5679999999999999888763 5777778887765433 334666 8998754 67544
No 186
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.36 E-value=1.5e-05 Score=53.03 Aligned_cols=89 Identities=12% Similarity=0.235 Sum_probs=62.1
Q ss_pred CCCcEEEEEec-CCChhhhhhhHHHHHHHHHhcC-CEEEEEEeCCC----------------------------chhHHh
Q psy11159 44 ASTPVIVDFFA-TWCNPCKTLTPRLEAVIDEMKG-KVVLAKVDIDE----------------------------LTDLAM 93 (141)
Q Consensus 44 ~~~~~lv~f~~-~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~ 93 (141)
.++++++.||. +||+.|....+.+.++.+++.+ ++.++.+++|. ..++++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 36789999995 8899999988999999888864 46777776542 224677
Q ss_pred hCCcc------cccEEEEE-eCCeEEEEEecC----CCHHHHHHHHHHHH
Q psy11159 94 DYEVS------AVPVLIAM-KNGKELDRLIGL----QDIDKLKSFIDNLV 132 (141)
Q Consensus 94 ~~~v~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~i~~~~ 132 (141)
.||+. ..|+.+++ ++|+++....+. .+.+++.+.|+...
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~~ 164 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAFQ 164 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhhh
Confidence 88875 35776666 678777655442 25556666665543
No 187
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.34 E-value=3.1e-05 Score=54.76 Aligned_cols=105 Identities=15% Similarity=0.217 Sum_probs=71.1
Q ss_pred eeEEeChhhHHHHHhcCCCcEEEEEecCCChhhhh-----hhHHHHHHHHHhc--CCEEEEEEeCCCchhHHhhCCcccc
Q psy11159 28 SFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKT-----LTPRLEAVIDEMK--GKVVLAKVDIDELTDLAMDYEVSAV 100 (141)
Q Consensus 28 ~~~~~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~-----~~~~l~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~ 100 (141)
-+...+.++|.+.++. .+..+|+|+.+--..-.. +...+-+++++.- .++.|+.||..++..+++++|+...
T Consensus 35 RVi~LneKNfk~~lKk-yd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~E~ 113 (383)
T PF01216_consen 35 RVIDLNEKNFKRALKK-YDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVEEE 113 (383)
T ss_dssp -CEEE-TTTHHHHHHH--SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--ST
T ss_pred ceEEcchhHHHHHHHh-hcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCcccc
Confidence 3344489999997765 455777788775322222 1233444444432 3699999999999999999999999
Q ss_pred cEEEEEeCCeEEEEEecCCCHHHHHHHHHHHHhc
Q psy11159 101 PVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEK 134 (141)
Q Consensus 101 Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~ 134 (141)
+++.+|++|+.+. +.|..+++.+..||..+++.
T Consensus 114 ~SiyVfkd~~~IE-ydG~~saDtLVeFl~dl~ed 146 (383)
T PF01216_consen 114 GSIYVFKDGEVIE-YDGERSADTLVEFLLDLLED 146 (383)
T ss_dssp TEEEEEETTEEEE-E-S--SHHHHHHHHHHHHSS
T ss_pred CcEEEEECCcEEE-ecCccCHHHHHHHHHHhccc
Confidence 9999999997766 56999999999999998864
No 188
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.32 E-value=1.2e-05 Score=61.23 Aligned_cols=102 Identities=15% Similarity=0.134 Sum_probs=81.7
Q ss_pred ChhhHHHHHhcCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEe-CCe
Q psy11159 33 DMNDFEKKVKNASTP-VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMK-NGK 110 (141)
Q Consensus 33 ~~~~~~~~i~~~~~~-~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~-~g~ 110 (141)
..+++.+.+.+-.++ .++.|+.+.|..|..+...+++++... +++.+...|..++.+..++|++...|++.++. +|+
T Consensus 353 ~~~~l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s-~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~ 431 (555)
T TIGR03143 353 LRQQLVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASLS-EKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGN 431 (555)
T ss_pred HHHHHHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhcC-CcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCc
Confidence 344455555544555 577888889999999999999998655 47998889998899999999999999999984 554
Q ss_pred E-EEEEecCCCHHHHHHHHHHHHhcc
Q psy11159 111 E-LDRLIGLQDIDKLKSFIDNLVEKQ 135 (141)
Q Consensus 111 ~-~~~~~g~~~~~~l~~~i~~~~~~~ 135 (141)
. -.++.|-..-.+|..+|..++.-+
T Consensus 432 ~~~i~f~g~P~G~Ef~s~i~~i~~~~ 457 (555)
T TIGR03143 432 YTGLKFHGVPSGHELNSFILALYNAA 457 (555)
T ss_pred ccceEEEecCccHhHHHHHHHHHHhc
Confidence 3 368899989999999999987644
No 189
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.31 E-value=1.8e-05 Score=46.33 Aligned_cols=93 Identities=17% Similarity=0.223 Sum_probs=69.2
Q ss_pred EEeChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCC
Q psy11159 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNG 109 (141)
Q Consensus 30 ~~~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 109 (141)
.+.+.+++++.+ ..+++++|-|+.+++. .....+.+++..+++.+.|+.+. +.++.+++++.. |++++++..
T Consensus 3 ~i~s~~~l~~~~-~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~~-~~i~l~~~~ 74 (97)
T cd02981 3 ELTSKEELEKFL-DKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVKP-GSVVLFKPF 74 (97)
T ss_pred ecCCHHHHHHHh-ccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCCC-CceEEeCCc
Confidence 455677777754 5678889999999887 46677888898887778887776 456777777654 888888653
Q ss_pred -eEEEEEecCCCHHHHHHHHHH
Q psy11159 110 -KELDRLIGLQDIDKLKSFIDN 130 (141)
Q Consensus 110 -~~~~~~~g~~~~~~l~~~i~~ 130 (141)
.....+.|..+.++|.+||..
T Consensus 75 ~~~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 75 EEEPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred ccCCccCCCCCCHHHHHHHHHh
Confidence 444557887788999999874
No 190
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.29 E-value=2.2e-05 Score=46.23 Aligned_cols=51 Identities=20% Similarity=0.217 Sum_probs=37.0
Q ss_pred CCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhH----HhhCCcccccEEEEEeCCeEEE
Q psy11159 55 TWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDL----AMDYEVSAVPVLIAMKNGKELD 113 (141)
Q Consensus 55 ~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~g~~~~ 113 (141)
+|||+|.+....|.+. ++.+..+|++++++. .+..|-..+|.+++ +|+.+.
T Consensus 25 ~~Cp~C~~ak~lL~~~------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi--~g~~iG 79 (97)
T TIGR00365 25 PQCGFSARAVQILKAC------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV--KGEFVG 79 (97)
T ss_pred CCCchHHHHHHHHHHc------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE--CCEEEe
Confidence 8999999999888774 466778888776643 34456778899755 676543
No 191
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=98.29 E-value=1e-05 Score=48.80 Aligned_cols=74 Identities=15% Similarity=0.232 Sum_probs=59.0
Q ss_pred hhhhhhhHHHHHHHHHhc-CCEEEEEEeCCCchhHHhhCCccc----ccEEEEEeCCeEEEEEecCC-CHHHHHHHHHHH
Q psy11159 58 NPCKTLTPRLEAVIDEMK-GKVVLAKVDIDELTDLAMDYEVSA----VPVLIAMKNGKELDRLIGLQ-DIDKLKSFIDNL 131 (141)
Q Consensus 58 ~~C~~~~~~l~~~~~~~~-~~~~~~~vd~~~~~~~~~~~~v~~----~Pt~~~~~~g~~~~~~~g~~-~~~~l~~~i~~~ 131 (141)
..-..+...+.++++.++ +++.|+.+|.++.....+.||+.+ .|.+.+...........+.. +.+.|.+|+++.
T Consensus 31 ~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 31 KGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKGKKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred hHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCCCccCCCcccCCHHHHHHHHHHh
Confidence 444678899999999999 799999999998877889999984 89988885322233345666 889999999875
No 192
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=1e-05 Score=45.93 Aligned_cols=66 Identities=23% Similarity=0.387 Sum_probs=44.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCch-----hHHhhC-CcccccEEEEEeCCeEEEEEecCCCHH
Q psy11159 49 IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT-----DLAMDY-EVSAVPVLIAMKNGKELDRLIGLQDID 122 (141)
Q Consensus 49 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~-----~~~~~~-~v~~~Pt~~~~~~g~~~~~~~g~~~~~ 122 (141)
++.|..++||+|++.+..|.+. ++.+..++++.++ +..++. |...+|.+++ +|+.+ .|..+.+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~~i---gg~~d~~ 71 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGKHV---GGCDDLD 71 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCEEE---eCcccHH
Confidence 6779999999999999888733 5677777766554 233444 7899999776 56532 3443555
Q ss_pred HHH
Q psy11159 123 KLK 125 (141)
Q Consensus 123 ~l~ 125 (141)
++.
T Consensus 72 ~~~ 74 (80)
T COG0695 72 ALE 74 (80)
T ss_pred HHH
Confidence 443
No 193
>PRK10638 glutaredoxin 3; Provisional
Probab=98.15 E-value=1.3e-05 Score=45.71 Aligned_cols=57 Identities=14% Similarity=0.268 Sum_probs=41.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchh----HHhhCCcccccEEEEEeCCeEEE
Q psy11159 49 IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTD----LAMDYEVSAVPVLIAMKNGKELD 113 (141)
Q Consensus 49 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~ 113 (141)
++.|..+||++|++.+..|.+. ++.+..+|++.+++ +.+..+...+|++++ +|+.+.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~~ig 64 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQHIG 64 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 5678899999999999888763 46677778876653 344457778998744 675554
No 194
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=98.11 E-value=1.7e-05 Score=45.89 Aligned_cols=58 Identities=28% Similarity=0.438 Sum_probs=44.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCC--Cc------------------------------hhHHhhCC
Q psy11159 49 IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDID--EL------------------------------TDLAMDYE 96 (141)
Q Consensus 49 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~--~~------------------------------~~~~~~~~ 96 (141)
+..|+++.|++|..+.+.+.++....++++.+...... .. .....++|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 46799999999999999999998666666666665432 11 13456789
Q ss_pred cccccEEEEE
Q psy11159 97 VSAVPVLIAM 106 (141)
Q Consensus 97 v~~~Pt~~~~ 106 (141)
+.++|++++.
T Consensus 81 ~~g~Pt~v~~ 90 (98)
T cd02972 81 VTGTPTFVVN 90 (98)
T ss_pred CCCCCEEEEC
Confidence 9999998874
No 195
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.10 E-value=5.2e-05 Score=43.95 Aligned_cols=50 Identities=20% Similarity=0.258 Sum_probs=35.9
Q ss_pred CCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhH----HhhCCcccccEEEEEeCCeEE
Q psy11159 55 TWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDL----AMDYEVSAVPVLIAMKNGKEL 112 (141)
Q Consensus 55 ~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~g~~~ 112 (141)
+||++|...+..|.+. ++.|..+|+++++++ .+..|-..+|.+++ +|+.+
T Consensus 21 ~~Cp~C~~ak~~L~~~------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi--~g~~i 74 (90)
T cd03028 21 PRCGFSRKVVQILNQL------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV--NGELV 74 (90)
T ss_pred CCCcHHHHHHHHHHHc------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE--CCEEE
Confidence 6999999998888775 466777777776654 34457778999744 77644
No 196
>KOG3171|consensus
Probab=98.08 E-value=2.7e-05 Score=51.50 Aligned_cols=91 Identities=16% Similarity=0.350 Sum_probs=77.0
Q ss_pred CCceeeeeEEeChhhHHHHHhcC--CCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCccc
Q psy11159 22 GSAVYTSFKVQDMNDFEKKVKNA--STPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSA 99 (141)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~i~~~--~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~ 99 (141)
++....++++.+.++|...+... .-.++|..|-+--+-|..+...+.-++.+|+ .+.|+++-.... ....+|...+
T Consensus 134 gp~~~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP-~vKFckikss~~-gas~~F~~n~ 211 (273)
T KOG3171|consen 134 GPRYGFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP-IVKFCKIKSSNT-GASDRFSLNV 211 (273)
T ss_pred CCccceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCC-ceeEEEeeeccc-cchhhhcccC
Confidence 44456788999999999988655 3366889999999999999999999999999 799999987655 5578889999
Q ss_pred ccEEEEEeCCeEEEE
Q psy11159 100 VPVLIAMKNGKELDR 114 (141)
Q Consensus 100 ~Pt~~~~~~g~~~~~ 114 (141)
+|++++|++|+.+.-
T Consensus 212 lP~LliYkgGeLIgN 226 (273)
T KOG3171|consen 212 LPTLLIYKGGELIGN 226 (273)
T ss_pred CceEEEeeCCchhHH
Confidence 999999999987763
No 197
>KOG2603|consensus
Probab=98.07 E-value=6e-05 Score=52.52 Aligned_cols=106 Identities=20% Similarity=0.421 Sum_probs=77.8
Q ss_pred eeeEEeChhhHHHHHhcCCC--cEEEEEec----CCChhhhhhhHHHHHHHHHhc------C--CEEEEEEeCCCchhHH
Q psy11159 27 TSFKVQDMNDFEKKVKNAST--PVIVDFFA----TWCNPCKTLTPRLEAVIDEMK------G--KVVLAKVDIDELTDLA 92 (141)
Q Consensus 27 ~~~~~~~~~~~~~~i~~~~~--~~lv~f~~----~~C~~C~~~~~~l~~~~~~~~------~--~~~~~~vd~~~~~~~~ 92 (141)
.+++. +.+.+...++...+ ..+++|+| ..|.-|+.+...+.-++..+. + ++-|..||.++.++..
T Consensus 41 ~VI~~-n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~F 119 (331)
T KOG2603|consen 41 GVIRM-NDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVF 119 (331)
T ss_pred CeEEe-cCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHH
Confidence 34444 77888888876533 34666666 479999999999988887653 2 4789999999999999
Q ss_pred hhCCcccccEEEEEe--CCeEE------EEEecCCCHHHHHHHHHHHHhc
Q psy11159 93 MDYEVSAVPVLIAMK--NGKEL------DRLIGLQDIDKLKSFIDNLVEK 134 (141)
Q Consensus 93 ~~~~v~~~Pt~~~~~--~g~~~------~~~~g~~~~~~l~~~i~~~~~~ 134 (141)
+.+++...|++++|. .|+.. ....|. ..+.+.+|+++..+-
T Consensus 120 q~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~-~Ae~iaqfv~~~tkv 168 (331)
T KOG2603|consen 120 QQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGF-EAEQIAQFVADRTKV 168 (331)
T ss_pred HHhcccCCCeEEEeCCCccccccCccchhhhcch-hHHHHHHHHHHhhhh
Confidence 999999999999992 22221 122233 478888888887664
No 198
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=2.1e-05 Score=60.03 Aligned_cols=100 Identities=17% Similarity=0.255 Sum_probs=71.6
Q ss_pred eChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHH---HHHHHHhcCCEEEEEEeCCCchhHHhhCC--------cccc
Q psy11159 32 QDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRL---EAVIDEMKGKVVLAKVDIDELTDLAMDYE--------VSAV 100 (141)
Q Consensus 32 ~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vd~~~~~~~~~~~~--------v~~~ 100 (141)
.+.+.|.+ .+..+||+++-...+||.-|+.|...= .++++-+..++.-++||.++-|++-+.|. -.|.
T Consensus 31 W~~eAf~~-A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGW 109 (667)
T COG1331 31 WGEEAFAK-AKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGW 109 (667)
T ss_pred cCHHHHHH-HHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCC
Confidence 45666666 577899999999999999999986543 56777776678889999999998776664 5689
Q ss_pred c-EEEEEeCCeEEEEEecC-----CCHHHHHHHHHHHH
Q psy11159 101 P-VLIAMKNGKELDRLIGL-----QDIDKLKSFIDNLV 132 (141)
Q Consensus 101 P-t~~~~~~g~~~~~~~g~-----~~~~~l~~~i~~~~ 132 (141)
| |+++-++|++....+.. .....|.+.++++.
T Consensus 110 PLtVfLTPd~kPFfagTY~P~e~r~g~pGf~~lL~~i~ 147 (667)
T COG1331 110 PLTVFLTPDGKPFFAGTYFPKEDRYGRPGFKQLLEAIR 147 (667)
T ss_pred ceeEEECCCCceeeeeeecCCcccCCCcCHHHHHHHHH
Confidence 9 55555999887644432 12234555554443
No 199
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.95 E-value=0.00014 Score=49.21 Aligned_cols=106 Identities=14% Similarity=0.291 Sum_probs=69.8
Q ss_pred CceeeeeEEeChh--hHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCC-------------
Q psy11159 23 SAVYTSFKVQDMN--DFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDE------------- 87 (141)
Q Consensus 23 ~~~~~~~~~~~~~--~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~------------- 87 (141)
++..++++..... .+.+. ...++|.|+.|.+-.||+=+.-.+.+++++++|.+.+.|+.|-+.+
T Consensus 79 APns~vv~l~g~~~~~ildf-~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsDgW~~~~~~ 157 (237)
T PF00837_consen 79 APNSPVVTLDGQRSCRILDF-AKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSDGWAFGNNP 157 (237)
T ss_pred CCCCceEeeCCCcceeHHHh-ccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCCCccCCCCc
Confidence 3344556554333 23333 3458999999999999999999999999999998755565554321
Q ss_pred -----ch----------------------------hHHhhCCccccc-EEEEEeCCeEEEEE-ecC--CCHHHHHHHHHH
Q psy11159 88 -----LT----------------------------DLAMDYEVSAVP-VLIAMKNGKELDRL-IGL--QDIDKLKSFIDN 130 (141)
Q Consensus 88 -----~~----------------------------~~~~~~~v~~~P-t~~~~~~g~~~~~~-~g~--~~~~~l~~~i~~ 130 (141)
+. ...+.|| ..| .+.++++|+.++.- .|+ .+.+++++|+++
T Consensus 158 ~~i~qh~sledR~~aA~~l~~~~~~~pi~vD~mdN~~~~~Yg--A~PeRlyIi~~gkv~Y~Gg~GP~~y~~~e~r~~L~~ 235 (237)
T PF00837_consen 158 YEIPQHRSLEDRLRAAKLLKEEFPQCPIVVDTMDNNFNKAYG--ALPERLYIIQDGKVVYKGGPGPFGYSPEELREWLEK 235 (237)
T ss_pred eeecCCCCHHHHHHHHHHHHhhCCCCCEEEEccCCHHHHHhC--CCcceEEEEECCEEEEeCCCCCCcCCHHHHHHHHHh
Confidence 00 1122222 457 56777888866543 233 367899999987
Q ss_pred H
Q psy11159 131 L 131 (141)
Q Consensus 131 ~ 131 (141)
+
T Consensus 236 ~ 236 (237)
T PF00837_consen 236 Y 236 (237)
T ss_pred c
Confidence 4
No 200
>PRK10824 glutaredoxin-4; Provisional
Probab=97.86 E-value=0.00013 Score=44.18 Aligned_cols=51 Identities=22% Similarity=0.186 Sum_probs=35.0
Q ss_pred CCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHh----hCCcccccEEEEEeCCeEEE
Q psy11159 55 TWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAM----DYEVSAVPVLIAMKNGKELD 113 (141)
Q Consensus 55 ~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~----~~~v~~~Pt~~~~~~g~~~~ 113 (141)
+|||+|++....|.+.. +.+..+|++.++++.. .-|-..+|.+++ +|+-++
T Consensus 28 p~Cpyc~~ak~lL~~~~------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI--~G~~IG 82 (115)
T PRK10824 28 PSCGFSAQAVQALSACG------ERFAYVDILQNPDIRAELPKYANWPTFPQLWV--DGELVG 82 (115)
T ss_pred CCCchHHHHHHHHHHcC------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE--CCEEEc
Confidence 59999999998887762 4445566666654433 336678898666 776664
No 201
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.84 E-value=0.00033 Score=40.98 Aligned_cols=100 Identities=20% Similarity=0.292 Sum_probs=74.9
Q ss_pred eEEeChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCC--chhHHhhCCcc----ccc-
Q psy11159 29 FKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDE--LTDLAMDYEVS----AVP- 101 (141)
Q Consensus 29 ~~~~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~----~~P- 101 (141)
..+.+..+|..+++. .+-+++.|..+- ..-......+.++++...+.-+++.+||.. ...+|+++.+. --|
T Consensus 4 e~i~d~KdfKKLLRT-r~NVLvLy~ks~-k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~ 81 (112)
T cd03067 4 EDISDHKDFKKLLRT-RNNVLVLYSKSA-KSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPV 81 (112)
T ss_pred ccccchHHHHHHHhh-cCcEEEEEecch-hhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcc
Confidence 467889999998754 444666666654 333444558889999999888999999987 56799999988 555
Q ss_pred EEEEEeCCeEEEEEecCCCHHHHHHHHHH
Q psy11159 102 VLIAMKNGKELDRLIGLQDIDKLKSFIDN 130 (141)
Q Consensus 102 t~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 130 (141)
++.=|++|.....|....+...+..|+..
T Consensus 82 ~LkHYKdG~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 82 ELKHYKDGDFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred hhhcccCCCccccccchhhHHHHHHHhhC
Confidence 44555899877777778888888888753
No 202
>KOG3170|consensus
Probab=97.83 E-value=0.00028 Score=46.32 Aligned_cols=102 Identities=20% Similarity=0.361 Sum_probs=75.1
Q ss_pred eeeeEEeChhhHHHHHhcC--CCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEE
Q psy11159 26 YTSFKVQDMNDFEKKVKNA--STPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVL 103 (141)
Q Consensus 26 ~~~~~~~~~~~~~~~i~~~--~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 103 (141)
..+..| +..++.+.+... +-.++|..|...-+.|..+...+++++.+|+ ++.|+++-.... ...|--...||+
T Consensus 91 G~V~~I-Sg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp-~iKFVki~at~c---IpNYPe~nlPTl 165 (240)
T KOG3170|consen 91 GEVFPI-SGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFP-QIKFVKIPATTC---IPNYPESNLPTL 165 (240)
T ss_pred cceeec-cchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCC-cceEEecccccc---cCCCcccCCCeE
Confidence 344555 666666666443 6688999999999999999999999999999 799988764432 223445678999
Q ss_pred EEEeCCeEEEEEecC-------CCHHHHHHHHHHHH
Q psy11159 104 IAMKNGKELDRLIGL-------QDIDKLKSFIDNLV 132 (141)
Q Consensus 104 ~~~~~g~~~~~~~g~-------~~~~~l~~~i~~~~ 132 (141)
++|..|.....+.|. .+.+++..++-+..
T Consensus 166 ~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qag 201 (240)
T KOG3170|consen 166 LVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQAG 201 (240)
T ss_pred EEeecchHHhheehhhhhcCCcCCHHHHHHHHHhcc
Confidence 999988766555543 35678877776653
No 203
>KOG1752|consensus
Probab=97.83 E-value=0.00014 Score=43.20 Aligned_cols=58 Identities=21% Similarity=0.266 Sum_probs=40.8
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCch-hHH----hhCCcccccEEEEEeCCeEE
Q psy11159 49 IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT-DLA----MDYEVSAVPVLIAMKNGKEL 112 (141)
Q Consensus 49 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~-~~~----~~~~v~~~Pt~~~~~~g~~~ 112 (141)
+|.|..+||++|+.++..|.+ ++....++.+|-+.+. ++. +.-+...+|.+++ +|+-+
T Consensus 16 VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~i 78 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKFI 78 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEEE
Confidence 567999999999998777766 4445677777776554 332 2334668898766 77666
No 204
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.73 E-value=0.00014 Score=53.59 Aligned_cols=56 Identities=13% Similarity=0.299 Sum_probs=41.3
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchh---HHhh---------CCcccccEEEEEeCCeEE
Q psy11159 49 IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTD---LAMD---------YEVSAVPVLIAMKNGKEL 112 (141)
Q Consensus 49 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~---~~~~---------~~v~~~Pt~~~~~~g~~~ 112 (141)
|+.|+.+|||+|++.+..|.+. ++.+..+|+++.+. +.++ .|..++|++++ +|+.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~i 71 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHI 71 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEEE
Confidence 6789999999999998887774 57778888887663 2222 36778999766 66543
No 205
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=97.65 E-value=0.0023 Score=37.83 Aligned_cols=96 Identities=7% Similarity=0.031 Sum_probs=65.3
Q ss_pred eEEeChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeC
Q psy11159 29 FKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKN 108 (141)
Q Consensus 29 ~~~~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 108 (141)
..+.+.++++.++...+..++|-|+.+--. .....+.+++..+++...|+... +.++...+++. .|.++++++
T Consensus 3 ~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~~-~~~i~l~~~ 75 (102)
T cd03066 3 EIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF---DSKVAKKLGLK-MNEVDFYEP 75 (102)
T ss_pred eEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC---cHHHHHHcCCC-CCcEEEeCC
Confidence 456678888887641566667777766433 35557788888887677775443 34566777765 588888855
Q ss_pred -CeEEEEE-ecCCCHHHHHHHHHHH
Q psy11159 109 -GKELDRL-IGLQDIDKLKSFIDNL 131 (141)
Q Consensus 109 -g~~~~~~-~g~~~~~~l~~~i~~~ 131 (141)
......+ .|..+.+.|.+||...
T Consensus 76 ~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 76 FMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred CCCCCcccCCCCCCHHHHHHHHHHh
Confidence 3333446 6777999999999864
No 206
>PTZ00062 glutaredoxin; Provisional
Probab=97.64 E-value=0.00037 Score=46.47 Aligned_cols=51 Identities=22% Similarity=0.258 Sum_probs=36.1
Q ss_pred CCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHh----hCCcccccEEEEEeCCeEEE
Q psy11159 55 TWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAM----DYEVSAVPVLIAMKNGKELD 113 (141)
Q Consensus 55 ~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~----~~~v~~~Pt~~~~~~g~~~~ 113 (141)
|+|++|++....|.+. ++.+..+|+++++++.+ ..|-..+|.+++ +|+.++
T Consensus 126 p~C~~C~~~k~~L~~~------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI--~G~~IG 180 (204)
T PTZ00062 126 PFCRFSNAVVNMLNSS------GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV--NGELIG 180 (204)
T ss_pred CCChhHHHHHHHHHHc------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE--CCEEEc
Confidence 7999999988887754 56777888887765433 335567888665 676553
No 207
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=97.60 E-value=0.00046 Score=45.02 Aligned_cols=33 Identities=21% Similarity=0.416 Sum_probs=26.3
Q ss_pred EEecCCChhhhhhhHHHHHHHHHhcCCEEEEEE
Q psy11159 51 DFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKV 83 (141)
Q Consensus 51 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v 83 (141)
+|..|.|+.|-...|.+.++..++++++.+-.+
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i 34 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFI 34 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEE
Confidence 689999999999999999999999987666554
No 208
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.55 E-value=0.0013 Score=42.77 Aligned_cols=66 Identities=21% Similarity=0.256 Sum_probs=54.7
Q ss_pred hhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCC-eEEEEEecC-CCHHHHHHHHHHHH
Q psy11159 63 LTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNG-KELDRLIGL-QDIDKLKSFIDNLV 132 (141)
Q Consensus 63 ~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g-~~~~~~~g~-~~~~~l~~~i~~~~ 132 (141)
....+.++++.+.+.+.|+.+. ++++++.+++.. |++++++++ +....+.|. .+.++|.+||....
T Consensus 8 ~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~ 75 (184)
T PF13848_consen 8 LFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNS 75 (184)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhc
Confidence 4567888999998889999887 677899999999 999999774 456778886 79999999999875
No 209
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.52 E-value=0.0012 Score=41.75 Aligned_cols=57 Identities=18% Similarity=0.316 Sum_probs=40.7
Q ss_pred EEEEecC------CChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchh----HHhhCCc----ccccEEEEEeCCeEEE
Q psy11159 49 IVDFFAT------WCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTD----LAMDYEV----SAVPVLIAMKNGKELD 113 (141)
Q Consensus 49 lv~f~~~------~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v----~~~Pt~~~~~~g~~~~ 113 (141)
++.|+++ +|++|..++..|++. ++.|-.+|++.+++ +.+.++- ..+|.+++ +|+.+.
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~~IG 72 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGRYLG 72 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCEEEe
Confidence 4567777 999999998888764 57888889987654 3344444 57898665 676554
No 210
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.39 E-value=0.01 Score=36.14 Aligned_cols=99 Identities=22% Similarity=0.339 Sum_probs=66.3
Q ss_pred eChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHH-HHh--cCCEEEEEEeCC-----CchhHHhhCCc--cccc
Q psy11159 32 QDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVI-DEM--KGKVVLAKVDID-----ELTDLAMDYEV--SAVP 101 (141)
Q Consensus 32 ~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~-~~~--~~~~~~~~vd~~-----~~~~~~~~~~v--~~~P 101 (141)
.+.-+|++.+.. .+.++|.|=... +--.-+..+.+++ +.. .+++-++.|.+. +|.+++++|++ ..+|
T Consensus 9 LD~~tFdKvi~k-f~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fP 85 (126)
T PF07912_consen 9 LDELTFDKVIPK-FKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFP 85 (126)
T ss_dssp ESTTHHHHHGGG-SSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-S
T ss_pred ccceehhheecc-CceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccCC
Confidence 367788987754 588899886543 2223344666666 433 246888888764 47789999999 4579
Q ss_pred EEEEEe-CCeEEEEE--ecCCCHHHHHHHHHHHHh
Q psy11159 102 VLIAMK-NGKELDRL--IGLQDIDKLKSFIDNLVE 133 (141)
Q Consensus 102 t~~~~~-~g~~~~~~--~g~~~~~~l~~~i~~~~~ 133 (141)
.+.+|. +.+...++ .|..+.+.|.+|+.+..+
T Consensus 86 v~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~ 120 (126)
T PF07912_consen 86 VIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTG 120 (126)
T ss_dssp EEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred EEEEecCCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence 999996 44556666 788899999999998644
No 211
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0048 Score=39.42 Aligned_cols=88 Identities=18% Similarity=0.298 Sum_probs=60.2
Q ss_pred CCCcEEEEEe-cCCChhhhhhhHHHHHHHHHhcC-CEEEEEEeCC---------------------CchhHHhhCCccc-
Q psy11159 44 ASTPVIVDFF-ATWCNPCKTLTPRLEAVIDEMKG-KVVLAKVDID---------------------ELTDLAMDYEVSA- 99 (141)
Q Consensus 44 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~---------------------~~~~~~~~~~v~~- 99 (141)
.++++|++|| .+++|-|-...-.+.+...++.. +..++-|..| ...++++.||+.+
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~ 108 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGE 108 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcccc
Confidence 3678999998 58899999888888888777764 4677777654 3456888888754
Q ss_pred -----------cc-EEEEEeCCeEEEEEecCC---CHHHHHHHHHHH
Q psy11159 100 -----------VP-VLIAMKNGKELDRLIGLQ---DIDKLKSFIDNL 131 (141)
Q Consensus 100 -----------~P-t~~~~~~g~~~~~~~g~~---~~~~l~~~i~~~ 131 (141)
.+ |+++-++|++........ ..+++.+.++++
T Consensus 109 k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 109 KKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred cccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 24 455557888777664432 345666665554
No 212
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0018 Score=44.31 Aligned_cols=38 Identities=42% Similarity=0.688 Sum_probs=29.9
Q ss_pred hHHhhCCcccccEEEEEeCCeEEEEEecCCCHHHHHHHHHHHH
Q psy11159 90 DLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLV 132 (141)
Q Consensus 90 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 132 (141)
.+.+++|+.++||+++ +|+ .+.|..+.+++.+.|....
T Consensus 206 ~~a~~~gv~gTPt~~v--~~~---~~~g~~~~~~l~~~i~~~~ 243 (244)
T COG1651 206 KLAQQLGVNGTPTFIV--NGK---LVPGLPDLDELKAIIDEAL 243 (244)
T ss_pred HHHHhcCCCcCCeEEE--CCe---eecCCCCHHHHHHHHHHhh
Confidence 4666889999999877 444 7778888899988887754
No 213
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=97.29 E-value=0.0087 Score=39.18 Aligned_cols=35 Identities=31% Similarity=0.530 Sum_probs=28.4
Q ss_pred HHhhCCcccccEEEEEeCCeEEEEEecCCCHHHHHHHHH
Q psy11159 91 LAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129 (141)
Q Consensus 91 ~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~ 129 (141)
.+.++|+.++|++++ +|+ ....|....+.|.+.|+
T Consensus 159 ~a~~~gv~GvP~~vv--~g~--~~~~G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 159 EARQLGVFGVPTFVV--NGK--YRFFGADRLDELEDALQ 193 (193)
T ss_dssp HHHHTTCSSSSEEEE--TTT--EEEESCSSHHHHHHHH-
T ss_pred HHHHcCCcccCEEEE--CCE--EEEECCCCHHHHHHHhC
Confidence 456889999999888 776 77889989999888764
No 214
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=97.23 E-value=0.0093 Score=35.41 Aligned_cols=94 Identities=18% Similarity=0.243 Sum_probs=63.1
Q ss_pred eEEeChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeC
Q psy11159 29 FKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKN 108 (141)
Q Consensus 29 ~~~~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 108 (141)
..+.+.++++..+. .++.++|-|+.+--. .....+.+++..++++..|+... +..+...+++ .|++++|+.
T Consensus 3 ~~i~s~~~l~~f~~-~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~--~~~ivl~~p 73 (104)
T cd03069 3 VELRTEAEFEKFLS-DDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---DKQLLEKYGY--GEGVVLFRP 73 (104)
T ss_pred cccCCHHHHHHHhc-cCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---hHHHHHhcCC--CCceEEEec
Confidence 34567778888664 566677777766443 35567788888887678886544 3466778888 577777721
Q ss_pred -------CeEEEEEecCCCHHHHHHHHHHH
Q psy11159 109 -------GKELDRLIGLQDIDKLKSFIDNL 131 (141)
Q Consensus 109 -------g~~~~~~~g~~~~~~l~~~i~~~ 131 (141)
......+.|..+.+.|.+||...
T Consensus 74 ~~~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 74 PRLSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred hhhhcccCcccccccCcCCHHHHHHHHHhh
Confidence 12223467777888999999764
No 215
>KOG2640|consensus
Probab=97.17 E-value=0.00013 Score=50.87 Aligned_cols=87 Identities=17% Similarity=0.349 Sum_probs=68.1
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEE-eCCCchhHHhhCCcccccEEEEEeCCeEEEEEecCCCHHH
Q psy11159 45 STPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKV-DIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDK 123 (141)
Q Consensus 45 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v-d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~ 123 (141)
..++-..||++||+..+..+|.++-....++ .+....+ +...-+....+|++.+.|++++. +-+-..++.|..+...
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~-~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~-n~t~~~~~~~~r~l~s 153 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFS-SIQHFAVEESQALPSVFSSYGIHSEPSNLML-NQTCPASYRGERDLAS 153 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhcc-ccccccHHHHhhcccchhccccccCCcceee-ccccchhhcccccHHH
Confidence 5578899999999999999999988888876 2333322 23344677889999999997776 4455678889999999
Q ss_pred HHHHHHHHHh
Q psy11159 124 LKSFIDNLVE 133 (141)
Q Consensus 124 l~~~i~~~~~ 133 (141)
+.++..+.+.
T Consensus 154 Lv~fy~~i~~ 163 (319)
T KOG2640|consen 154 LVNFYTEITP 163 (319)
T ss_pred HHHHHHhhcc
Confidence 9999988875
No 216
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=96.95 E-value=0.0057 Score=33.75 Aligned_cols=59 Identities=20% Similarity=0.335 Sum_probs=50.3
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHh-cCCEEEEEEeCCCchhHHhhCCcccccEEEEE
Q psy11159 48 VIVDFFATWCNPCKTLTPRLEAVIDEM-KGKVVLAKVDIDELTDLAMDYEVSAVPVLIAM 106 (141)
Q Consensus 48 ~lv~f~~~~C~~C~~~~~~l~~~~~~~-~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 106 (141)
.+..|-+...+.+......+.++.+++ ++...+-.+|+.++|++++.++|-.+||++-.
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~ 62 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVKV 62 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhhc
Confidence 466777888899999999999987776 45688999999999999999999999997654
No 217
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=96.92 E-value=0.03 Score=32.70 Aligned_cols=84 Identities=18% Similarity=0.225 Sum_probs=57.1
Q ss_pred hhHHHHHhcCCCcEEE-EEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeE-E
Q psy11159 35 NDFEKKVKNASTPVIV-DFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKE-L 112 (141)
Q Consensus 35 ~~~~~~i~~~~~~~lv-~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~-~ 112 (141)
+++.+...+-.+++.+ .|..+. ..|..+...+++++...+ ++.+...+.+. ..|++.+..+|+. -
T Consensus 8 ~qL~~~f~~l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSd-kI~~~~~~~~~-----------~~P~~~i~~~~~~~g 74 (94)
T cd02974 8 QQLKAYLERLENPVELVASLDDS-EKSAELLELLEEIASLSD-KITLEEDNDDE-----------RKPSFSINRPGEDTG 74 (94)
T ss_pred HHHHHHHHhCCCCEEEEEEeCCC-cchHHHHHHHHHHHHhCC-ceEEEEecCCC-----------CCCEEEEecCCCccc
Confidence 3444444444555644 555544 999999999999888765 66664433221 4699998877633 3
Q ss_pred EEEecCCCHHHHHHHHHHH
Q psy11159 113 DRLIGLQDIDKLKSFIDNL 131 (141)
Q Consensus 113 ~~~~g~~~~~~l~~~i~~~ 131 (141)
.++.|...-.++..+|..+
T Consensus 75 IrF~GiP~GhEf~Slilai 93 (94)
T cd02974 75 IRFAGIPMGHEFTSLVLAL 93 (94)
T ss_pred EEEEecCCchhHHHHHHHh
Confidence 6888988889999988764
No 218
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.88 E-value=0.02 Score=43.53 Aligned_cols=89 Identities=13% Similarity=0.188 Sum_probs=64.3
Q ss_pred hhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeEE-
Q psy11159 34 MNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKEL- 112 (141)
Q Consensus 34 ~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~- 112 (141)
.+++.+.+.+-.+++-+.++.+.|..|..+...++++++..+ ++.+...+.+ ...|++.+..+|+..
T Consensus 7 ~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~-~i~~~~~~~~-----------~~~p~~~~~~~~~~~~ 74 (517)
T PRK15317 7 KTQLKQYLELLERPIELVASLDDSEKSAELKELLEEIASLSD-KITVEEDSLD-----------VRKPSFSITRPGEDTG 74 (517)
T ss_pred HHHHHHHHHhCCCCEEEEEEeCCCchHHHHHHHHHHHHHhCC-ceEEEEccCC-----------CCCCEEEEEcCCccce
Confidence 344555554446677666666689999999999999988765 6666432211 247999888766543
Q ss_pred EEEecCCCHHHHHHHHHHHHhc
Q psy11159 113 DRLIGLQDIDKLKSFIDNLVEK 134 (141)
Q Consensus 113 ~~~~g~~~~~~l~~~i~~~~~~ 134 (141)
.++.|-..-.+|..||..++.-
T Consensus 75 i~f~g~P~g~Ef~s~i~~i~~~ 96 (517)
T PRK15317 75 VRFAGIPMGHEFTSLVLALLQV 96 (517)
T ss_pred EEEEecCccHHHHHHHHHHHHh
Confidence 6889998999999999998754
No 219
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.75 E-value=0.048 Score=41.55 Aligned_cols=90 Identities=16% Similarity=0.236 Sum_probs=64.4
Q ss_pred hhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeE-EE
Q psy11159 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKE-LD 113 (141)
Q Consensus 35 ~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~-~~ 113 (141)
+++.+.+.+-.+++-+.++.+.|..|..+...++++++..+ ++.+...+.+. ...|++.+..+|+. -.
T Consensus 8 ~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~-ki~~~~~~~~~----------~~~p~~~~~~~~~~~~i 76 (515)
T TIGR03140 8 AQLKSYLASLENPVTLVLSAGSHEKSKELLELLDEIASLSD-KISLTQNTADT----------LRKPSFTILRDGADTGI 76 (515)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCchhHHHHHHHHHHHHhCC-CeEEEEecCCc----------CCCCeEEEecCCcccce
Confidence 44455444446667665665579999999999999988765 67765433221 34699988877653 46
Q ss_pred EEecCCCHHHHHHHHHHHHhcc
Q psy11159 114 RLIGLQDIDKLKSFIDNLVEKQ 135 (141)
Q Consensus 114 ~~~g~~~~~~l~~~i~~~~~~~ 135 (141)
++.|...-.+|..+|..++.-.
T Consensus 77 ~f~g~P~g~Ef~s~i~~i~~~~ 98 (515)
T TIGR03140 77 RFAGIPGGHEFTSLVLAILQVG 98 (515)
T ss_pred EEEecCCcHHHHHHHHHHHHhc
Confidence 8899989999999999987543
No 220
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=96.42 E-value=0.062 Score=29.84 Aligned_cols=69 Identities=9% Similarity=0.067 Sum_probs=39.9
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCc----hhHHhhCCcccccEEEEEeCCeEEEEEecCCCHHHHH
Q psy11159 50 VDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDEL----TDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLK 125 (141)
Q Consensus 50 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~----~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~ 125 (141)
..|+.++|++|++.+-.+.+. ++.+-.++++.. +++.+.-+-..+|+++.-.+|..+. ....|.
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~------gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~------es~~I~ 70 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTEL------ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMF------ESADIV 70 (77)
T ss_pred eEecCCCCchHHHHHHHHHHc------CCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEE------cHHHHH
Confidence 467788999999888666665 333333444332 3444444556789864322342222 455666
Q ss_pred HHHHH
Q psy11159 126 SFIDN 130 (141)
Q Consensus 126 ~~i~~ 130 (141)
++|++
T Consensus 71 ~yL~~ 75 (77)
T cd03041 71 KYLFK 75 (77)
T ss_pred HHHHH
Confidence 66665
No 221
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.016 Score=32.03 Aligned_cols=59 Identities=22% Similarity=0.309 Sum_probs=38.7
Q ss_pred CcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCC--------------Cchh--HHhhCCcccccEEEEEeCC
Q psy11159 46 TPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDID--------------ELTD--LAMDYEVSAVPVLIAMKNG 109 (141)
Q Consensus 46 ~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~--------------~~~~--~~~~~~v~~~Pt~~~~~~g 109 (141)
+| +.|++..||.|..+..+++++. +.+-.|++. ..++ -.+..|--|+|.++. .+|
T Consensus 3 kp--~lfgsn~Cpdca~a~eyl~rl~------v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~-~d~ 73 (85)
T COG4545 3 KP--KLFGSNLCPDCAPAVEYLERLN------VDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT-DDG 73 (85)
T ss_pred Cc--eeeccccCcchHHHHHHHHHcC------CCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe-CCC
Confidence 55 5699999999999888887763 333344432 2222 245667778999665 567
Q ss_pred eEEE
Q psy11159 110 KELD 113 (141)
Q Consensus 110 ~~~~ 113 (141)
+.+.
T Consensus 74 ~vVl 77 (85)
T COG4545 74 KVVL 77 (85)
T ss_pred cEEE
Confidence 6654
No 222
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=96.20 E-value=0.12 Score=30.87 Aligned_cols=96 Identities=11% Similarity=0.178 Sum_probs=60.2
Q ss_pred eeEEeChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEe
Q psy11159 28 SFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMK 107 (141)
Q Consensus 28 ~~~~~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 107 (141)
+..+.+.++++..+.+.++.++|-|+.+--+ .....+.+++..+++...|+... +..+.+++++.. |.+++|+
T Consensus 2 v~~i~s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~---~~~~~~~~~~~~-~~vvl~r 74 (107)
T cd03068 2 SKQLQTLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTF---DSEIFKSLKVSP-GQLVVFQ 74 (107)
T ss_pred ceEcCCHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEC---hHHHHHhcCCCC-CceEEEC
Confidence 3456788888887655536677777766433 35567788899887778885544 346667777765 5555552
Q ss_pred C-------CeEEEEEecC-CCHHH-HHHHHHH
Q psy11159 108 N-------GKELDRLIGL-QDIDK-LKSFIDN 130 (141)
Q Consensus 108 ~-------g~~~~~~~g~-~~~~~-l~~~i~~ 130 (141)
. ......+.|. .+.++ |.+||.+
T Consensus 75 p~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 75 PEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred cHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 1 1122344555 45544 9999875
No 223
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=96.14 E-value=0.096 Score=32.66 Aligned_cols=73 Identities=14% Similarity=0.256 Sum_probs=53.7
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCccc----ccEEEEEeCCeEEEEEecCCCHHH
Q psy11159 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSA----VPVLIAMKNGKELDRLIGLQDIDK 123 (141)
Q Consensus 48 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~----~Pt~~~~~~g~~~~~~~g~~~~~~ 123 (141)
-++.|++|.|+=|..+...++. +.+.+-.+..+.-..+.++++|.. --|.++ +|. .+.|-...+.
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk~------~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~Gy---~vEGHVPa~a 95 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMKA------NGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NGY---YVEGHVPAEA 95 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHHh------CCcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cCE---EEeccCCHHH
Confidence 4778999999999998877763 257777777777777888888763 235444 673 4557788888
Q ss_pred HHHHHHHH
Q psy11159 124 LKSFIDNL 131 (141)
Q Consensus 124 l~~~i~~~ 131 (141)
+..+++..
T Consensus 96 I~~ll~~~ 103 (149)
T COG3019 96 IARLLAEK 103 (149)
T ss_pred HHHHHhCC
Confidence 88888764
No 224
>PRK09301 circadian clock protein KaiB; Provisional
Probab=96.06 E-value=0.033 Score=32.89 Aligned_cols=74 Identities=19% Similarity=0.230 Sum_probs=58.7
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHh-cCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeEEEEEecCC
Q psy11159 45 STPVIVDFFATWCNPCKTLTPRLEAVIDEM-KGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQ 119 (141)
Q Consensus 45 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~-~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~ 119 (141)
..+++-.|.+..-+.++.....+.++.+.+ .+...+-.+|+.++|++++.++|-.+||++-.- -....+..|-.
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~-P~P~rriiGDl 79 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKIL-PPPVRKIIGDL 79 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcC-CCCcceeeccc
Confidence 457788899999999999999999987654 556888889999999999999999999976652 23445555554
No 225
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=95.99 E-value=0.036 Score=31.77 Aligned_cols=73 Identities=19% Similarity=0.222 Sum_probs=57.0
Q ss_pred CcEEEEEecCCChhhhhhhHHHHHHHHHh-cCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeEEEEEecCC
Q psy11159 46 TPVIVDFFATWCNPCKTLTPRLEAVIDEM-KGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQ 119 (141)
Q Consensus 46 ~~~lv~f~~~~C~~C~~~~~~l~~~~~~~-~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~ 119 (141)
.+++=.|.+..-+.+......+.++.+++ .+...+-.+|+.++|++++.+++-.+||++-.- -....+..|-.
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~-P~P~rriiGdl 76 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKIL-PPPVRKIIGDL 76 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcC-CCCcceeeccc
Confidence 35677788999999999999999987654 556888889999999999999999999976652 23444555543
No 226
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.16 Score=32.27 Aligned_cols=89 Identities=13% Similarity=0.244 Sum_probs=59.8
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhcC-CEEEEEEeCCC--------chh---HH-hhCCcc------------
Q psy11159 44 ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG-KVVLAKVDIDE--------LTD---LA-MDYEVS------------ 98 (141)
Q Consensus 44 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~--------~~~---~~-~~~~v~------------ 98 (141)
.+|.+||.=+|+-|+..-... -|+.+.++|++ ++.++..-|++ +.+ +| ..|||+
T Consensus 24 ~GkVlLIVNtASkCGfTpQYe-gLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~YgVtFp~f~Ki~VnG~ 102 (162)
T COG0386 24 KGKVLLIVNTASKCGFTPQYE-GLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQLNYGVTFPMFSKIDVNGK 102 (162)
T ss_pred CCcEEEEEEcccccCCcHhHH-HHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHhccCceeeeeeEEeecCC
Confidence 488999999999999876443 56667777764 36655554432 111 11 122222
Q ss_pred ------------------------cccEEEEEeCCeEEEEEecCCCHHHHHHHHHHHHh
Q psy11159 99 ------------------------AVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVE 133 (141)
Q Consensus 99 ------------------------~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~ 133 (141)
.+--+++-++|+++.|+.-...++++...|+++++
T Consensus 103 ~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL~ 161 (162)
T COG0386 103 NAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLLA 161 (162)
T ss_pred CCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHhc
Confidence 12246666899999999988889999999998875
No 227
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=95.97 E-value=0.2 Score=31.35 Aligned_cols=92 Identities=10% Similarity=0.171 Sum_probs=63.2
Q ss_pred hcCCCcEEEEEecCCChhhhhhhHHH---HHHHHHhcCCEEEEEEeCCCch------------------hHHhhCCcccc
Q psy11159 42 KNASTPVIVDFFATWCNPCKTLTPRL---EAVIDEMKGKVVLAKVDIDELT------------------DLAMDYEVSAV 100 (141)
Q Consensus 42 ~~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vd~~~~~------------------~~~~~~~v~~~ 100 (141)
+.+.|+.+|+..++.-..+..+-..+ +.+.+-..+++.+..-|+.... ...+.++...+
T Consensus 18 ~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~f 97 (136)
T cd02990 18 ARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQL 97 (136)
T ss_pred hhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCCC
Confidence 45589999999998775554443333 3333344446777777765542 13456678999
Q ss_pred cEEEEE-eCC---eEEEEEecCCCHHHHHHHHHHHHh
Q psy11159 101 PVLIAM-KNG---KELDRLIGLQDIDKLKSFIDNLVE 133 (141)
Q Consensus 101 Pt~~~~-~~g---~~~~~~~g~~~~~~l~~~i~~~~~ 133 (141)
|.+.++ +.. +++.+..|..+.+++...|.+.++
T Consensus 98 P~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ve 134 (136)
T cd02990 98 PAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAME 134 (136)
T ss_pred CeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHHh
Confidence 988877 222 577899999999999998887664
No 228
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=95.81 E-value=0.043 Score=34.99 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=28.3
Q ss_pred CCcEEEEEe-cCCChhhhhh-hHHHHHHHHHhcC-CE-EEEEEeC
Q psy11159 45 STPVIVDFF-ATWCNPCKTL-TPRLEAVIDEMKG-KV-VLAKVDI 85 (141)
Q Consensus 45 ~~~~lv~f~-~~~C~~C~~~-~~~l~~~~~~~~~-~~-~~~~vd~ 85 (141)
++++++.|| +.||+.|... .+.+.+..+++.. ++ .++.+..
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~ 73 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSV 73 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEEC
Confidence 455555555 7899999998 8888888877752 34 3555554
No 229
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=95.75 E-value=0.35 Score=32.48 Aligned_cols=91 Identities=21% Similarity=0.296 Sum_probs=61.1
Q ss_pred CCCcEEEEEecCCCh-hhhhhhHHHHHHHHHhc----CC--EEEEEEeCCCc---------------------------h
Q psy11159 44 ASTPVIVDFFATWCN-PCKTLTPRLEAVIDEMK----GK--VVLAKVDIDEL---------------------------T 89 (141)
Q Consensus 44 ~~~~~lv~f~~~~C~-~C~~~~~~l~~~~~~~~----~~--~~~~~vd~~~~---------------------------~ 89 (141)
.+++++|.|.=..|+ .|-.....+..+.++.. .+ +.++.+|.+.. .
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~~ltg~~~~~~ 145 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWIGLTGTPEQIE 145 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCeeeeeCCHHHHH
Confidence 589999999978884 58877777777766665 23 55666664321 1
Q ss_pred hHHhhCCccc---------------ccEEEEE-eCCeEEEEEecCCCHHHHHHHHHHHHhc
Q psy11159 90 DLAMDYEVSA---------------VPVLIAM-KNGKELDRLIGLQDIDKLKSFIDNLVEK 134 (141)
Q Consensus 90 ~~~~~~~v~~---------------~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~~~~~ 134 (141)
++++.|+|.. ...++++ .+|+....+.+..+.+++.+.++.+++.
T Consensus 146 ~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~~ 206 (207)
T COG1999 146 EVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLKE 206 (207)
T ss_pred HHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhhc
Confidence 3444555442 1223334 6898888888887889999999888754
No 230
>KOG2507|consensus
Probab=95.73 E-value=0.28 Score=36.29 Aligned_cols=88 Identities=19% Similarity=0.290 Sum_probs=62.9
Q ss_pred CCcEEEEEecCCChhhhhhh--HHHHHH-HHHhcCCEEEEEEeCCCc--hhHHhhCCcccccEEEEE-eCCeEEEEEecC
Q psy11159 45 STPVIVDFFATWCNPCKTLT--PRLEAV-IDEMKGKVVLAKVDIDEL--TDLAMDYEVSAVPVLIAM-KNGKELDRLIGL 118 (141)
Q Consensus 45 ~~~~lv~f~~~~C~~C~~~~--~~l~~~-~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~ 118 (141)
++-++|.|.+...-....+. ...... .+.....+.-++++.... ..++.-|-+..+|.++++ .+|..+....|.
T Consensus 18 kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevitg~ 97 (506)
T KOG2507|consen 18 KKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVITGF 97 (506)
T ss_pred CCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEeecc
Confidence 56677778887777777766 333333 233333466666665543 356778889999988887 899999999999
Q ss_pred CCHHHHHHHHHHHH
Q psy11159 119 QDIDKLKSFIDNLV 132 (141)
Q Consensus 119 ~~~~~l~~~i~~~~ 132 (141)
.+.++|..-|++..
T Consensus 98 v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 98 VTADELASSIEKVW 111 (506)
T ss_pred ccHHHHHHHHHHHH
Confidence 99999888887654
No 231
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=95.69 E-value=0.16 Score=28.03 Aligned_cols=71 Identities=17% Similarity=0.248 Sum_probs=41.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCC--CchhHHhhCCcccccEEEEEe--CCeEEEEEecCCCHHHH
Q psy11159 49 IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDID--ELTDLAMDYEVSAVPVLIAMK--NGKELDRLIGLQDIDKL 124 (141)
Q Consensus 49 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~--~g~~~~~~~g~~~~~~l 124 (141)
+..|+.+.|++|++.+-.+.+. ++.+-.++.+ ...++ +.-+...+|++..-. +|+.+. ....+
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~------gi~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~l~------eS~~I 68 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH------GIPYEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQLV------DSSVI 68 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC------CCceEEEECCchhHHHH-HHhCCCccCEEEECCCCCccEEE------cHHHH
Confidence 4568889999999998666554 2333333333 22233 334556789876532 233322 45567
Q ss_pred HHHHHHHH
Q psy11159 125 KSFIDNLV 132 (141)
Q Consensus 125 ~~~i~~~~ 132 (141)
.++|++.+
T Consensus 69 ~~yL~~~~ 76 (77)
T cd03040 69 ISTLKTYL 76 (77)
T ss_pred HHHHHHHc
Confidence 77777654
No 232
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=95.56 E-value=0.0076 Score=36.28 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=25.7
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCch
Q psy11159 50 VDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT 89 (141)
Q Consensus 50 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~ 89 (141)
..|+.++|+.|++....|++- ++.|-.+|+.+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~ 35 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH------GVDYTAIDIVEEP 35 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCceEEecccCCc
Confidence 468899999999998777763 5667777766543
No 233
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=95.47 E-value=0.077 Score=28.83 Aligned_cols=55 Identities=15% Similarity=0.091 Sum_probs=30.6
Q ss_pred EEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCe
Q psy11159 51 DFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGK 110 (141)
Q Consensus 51 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 110 (141)
.|+.++|++|++.+-.+....-. +....++........+..+-..+|++.. .+|.
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl~----~~~~~~~~~~~~~~~~~~~~~~vP~L~~-~~~~ 57 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNIP----VEQIILQNDDEATPIRMIGAKQVPILEK-DDGS 57 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCCC----eEEEECCCCchHHHHHhcCCCccCEEEe-CCCe
Confidence 57789999999887666554222 2333444433323333334456888643 3354
No 234
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=95.47 E-value=0.11 Score=28.30 Aligned_cols=58 Identities=19% Similarity=0.213 Sum_probs=36.2
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCC-chhHHhhCCcccccEEEEEeCCeEE
Q psy11159 50 VDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDE-LTDLAMDYEVSAVPVLIAMKNGKEL 112 (141)
Q Consensus 50 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~v~~~Pt~~~~~~g~~~ 112 (141)
+.|+.++|++|++.+-.+.+..- .+.+..+|... .+++.+......+|++.. .+|..+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl----~~e~~~v~~~~~~~~~~~~np~~~vP~L~~-~~g~~l 60 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI----TVELREVELKNKPAEMLAASPKGTVPVLVL-GNGTVI 60 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC----CcEEEEeCCCCCCHHHHHHCCCCCCCEEEE-CCCcEE
Confidence 35788999999988766655432 24445555433 345555556778899753 346543
No 235
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.45 E-value=0.067 Score=36.23 Aligned_cols=46 Identities=22% Similarity=0.382 Sum_probs=37.0
Q ss_pred hHHhhCCcccccEEEEEeCCeEEEEEecCCCHHHHHHHHHHHHhcccCCC
Q psy11159 90 DLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEKQSAVN 139 (141)
Q Consensus 90 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~~ 139 (141)
..+++.||+++|+|++ +|+ ....|..+.+-+...|++.++.....+
T Consensus 175 ~~A~e~gI~gVP~fv~--d~~--~~V~Gaq~~~v~~~al~~~~~~~~~~~ 220 (225)
T COG2761 175 AAAQEMGIRGVPTFVF--DGK--YAVSGAQPYDVLEDALRQLLAEKAEEH 220 (225)
T ss_pred HHHHHCCCccCceEEE--cCc--EeecCCCCHHHHHHHHHHHHhcccccC
Confidence 3567899999999888 332 667899999999999999998765443
No 236
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.043 Score=36.27 Aligned_cols=44 Identities=16% Similarity=0.147 Sum_probs=36.9
Q ss_pred hHHhhCCcccccEEEEEeCCeEEEEEec--CCCHHHHHHHHHHHHh
Q psy11159 90 DLAMDYEVSAVPVLIAMKNGKELDRLIG--LQDIDKLKSFIDNLVE 133 (141)
Q Consensus 90 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~g--~~~~~~l~~~i~~~~~ 133 (141)
.+++++++.++||+++-.||+...--.| ..+.+.+..++.+.+.
T Consensus 165 ~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~~ 210 (212)
T COG3531 165 RLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRLA 210 (212)
T ss_pred HHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHHh
Confidence 4788999999999999999987776666 5678899988888764
No 237
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=95.16 E-value=0.11 Score=32.27 Aligned_cols=45 Identities=16% Similarity=0.277 Sum_probs=35.0
Q ss_pred CchhHHhhCCcccccEEEEEeCCe-----------EEEEEecCCCHHHHHHHHHHH
Q psy11159 87 ELTDLAMDYEVSAVPVLIAMKNGK-----------ELDRLIGLQDIDKLKSFIDNL 131 (141)
Q Consensus 87 ~~~~~~~~~~v~~~Pt~~~~~~g~-----------~~~~~~g~~~~~~l~~~i~~~ 131 (141)
-+|.+.++|+|+.+|++++.+++. ......|..+.+.-.+.+.+.
T Consensus 59 IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~~ 114 (130)
T TIGR02742 59 IDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQD 114 (130)
T ss_pred EChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHHh
Confidence 368999999999999999997764 466778888877666666543
No 238
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=95.16 E-value=0.019 Score=34.05 Aligned_cols=33 Identities=12% Similarity=0.081 Sum_probs=24.9
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCc
Q psy11159 50 VDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDEL 88 (141)
Q Consensus 50 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~ 88 (141)
..|+.++|+.|++....|++. ++.|-.+|+.++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~ 34 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH------GIEYEFIDYLKE 34 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCCcEEEeeccC
Confidence 568999999999998777763 466667776553
No 239
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=94.81 E-value=0.02 Score=32.49 Aligned_cols=53 Identities=25% Similarity=0.364 Sum_probs=44.8
Q ss_pred EecCCChhhhhhhHHHHHHHHHh-cCCEEEEEEeCCCchhHHhhCCcccccEEE
Q psy11159 52 FFATWCNPCKTLTPRLEAVIDEM-KGKVVLAKVDIDELTDLAMDYEVSAVPVLI 104 (141)
Q Consensus 52 f~~~~C~~C~~~~~~l~~~~~~~-~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 104 (141)
|-+..-+.+......+..+.+.+ ++...+-.+|+.++|++++.++|-.+||++
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEe
Confidence 55666677888888899988764 457999999999999999999999999965
No 240
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=94.64 E-value=0.18 Score=34.83 Aligned_cols=58 Identities=16% Similarity=0.128 Sum_probs=39.7
Q ss_pred hcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEE
Q psy11159 42 KNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAM 106 (141)
Q Consensus 42 ~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 106 (141)
..++|+.+++..+.|||.|-..+=.|-....+|+ ++.+.....+... .-..+|+++|.
T Consensus 55 ~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfG-n~~l~~~~S~~~d------~~pn~Ptl~F~ 112 (249)
T PF06053_consen 55 APNGKPEVIFIGWEGCPYCAAESWALYIALSRFG-NFSLEYHYSDPYD------NYPNTPTLIFN 112 (249)
T ss_pred CCCCeeEEEEEecccCccchhhHHHHHHHHHhcC-CeeeEEeecCccc------CCCCCCeEEEe
Confidence 4569999999999999999888766766677777 4554444333311 12356776665
No 241
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=94.39 E-value=0.43 Score=26.21 Aligned_cols=71 Identities=18% Similarity=0.156 Sum_probs=46.5
Q ss_pred EEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCC-chhHHhhCCcccccEEEEEeCCeEEEEEecCCCHHHHHHHHH
Q psy11159 51 DFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDE-LTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129 (141)
Q Consensus 51 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~ 129 (141)
.|+.++|++|++++=.+....- ...+..++..+ .+++.+...-..+|++. .+|..+. +...|.++|+
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i----~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l~------dS~~I~~yL~ 68 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGI----PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVLT------DSAAIIEYLE 68 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTE----EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEEE------SHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCC----eEEEeccCcccchhHHHhhcccccceEEE--ECCEEEe------CHHHHHHHHH
Confidence 3788999999988755544311 24555555554 34566666777899986 5676444 5677888887
Q ss_pred HHHh
Q psy11159 130 NLVE 133 (141)
Q Consensus 130 ~~~~ 133 (141)
+.-.
T Consensus 69 ~~~~ 72 (75)
T PF13417_consen 69 ERYP 72 (75)
T ss_dssp HHST
T ss_pred HHcC
Confidence 7543
No 242
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=94.26 E-value=0.078 Score=32.89 Aligned_cols=34 Identities=18% Similarity=0.345 Sum_probs=24.6
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCc
Q psy11159 49 IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDEL 88 (141)
Q Consensus 49 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~ 88 (141)
+..|+.++|+.|++....|++- ++.|-.+|+.++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~------gi~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH------DIPFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCcEEeeccCC
Confidence 4578899999999988776654 456666666543
No 243
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=94.02 E-value=0.091 Score=31.85 Aligned_cols=34 Identities=26% Similarity=0.303 Sum_probs=26.5
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCch
Q psy11159 50 VDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT 89 (141)
Q Consensus 50 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~ 89 (141)
..|+.++|+.|+.....|++- ++.+-.+|+.+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN------GIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------CCceEEEecCCCh
Confidence 468999999999998777762 5677778876654
No 244
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=93.94 E-value=0.59 Score=28.71 Aligned_cols=56 Identities=11% Similarity=0.194 Sum_probs=34.6
Q ss_pred CEEEEEEeCCCchh----------HHhhCCcccccEEEEEeCCeEEEEEecCCCHHHHHHHHHHHHhcc
Q psy11159 77 KVVLAKVDIDELTD----------LAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEKQ 135 (141)
Q Consensus 77 ~~~~~~vd~~~~~~----------~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~ 135 (141)
++.+.+.+..++|. +.++-|...+|.+++ +|+++. ...+.+.++|.+|+.-.....
T Consensus 40 gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV--dGeiv~-~G~YPt~eEl~~~~~i~~~~~ 105 (123)
T PF06953_consen 40 GVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV--DGEIVK-TGRYPTNEELAEWLGISFSEL 105 (123)
T ss_dssp T-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--TTEEEE-ESS---HHHHHHHHT--GGGT
T ss_pred CceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--CCEEEE-ecCCCCHHHHHHHhCCCcccc
Confidence 69999999987663 444558889998777 776554 445569999999987665543
No 245
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=93.73 E-value=0.25 Score=25.95 Aligned_cols=57 Identities=21% Similarity=0.129 Sum_probs=34.6
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCch--hHHhhCCcccccEEEEEeCCeEE
Q psy11159 50 VDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT--DLAMDYEVSAVPVLIAMKNGKEL 112 (141)
Q Consensus 50 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~--~~~~~~~v~~~Pt~~~~~~g~~~ 112 (141)
..|+.++|+.|.+.+-.+....-. +....++.+... ++.+..+-..+|++.. +|..+
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~----~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~--~~~~~ 60 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLP----YELVPVDLGEGEQEEFLALNPLGKVPVLED--GGLVL 60 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCC----cEEEEeCCCCCCCHHHHhcCCCCCCCEEEE--CCEEE
Confidence 357889999999887766665222 344444443322 2455566778898654 45433
No 246
>KOG2792|consensus
Probab=93.72 E-value=1.1 Score=31.20 Aligned_cols=91 Identities=23% Similarity=0.277 Sum_probs=59.2
Q ss_pred CCcEEEEEecCCCh-hhhhhhHHHHHHHHHhcC------CEEEEEEeCCCc--------------------------hhH
Q psy11159 45 STPVIVDFFATWCN-PCKTLTPRLEAVIDEMKG------KVVLAKVDIDEL--------------------------TDL 91 (141)
Q Consensus 45 ~~~~lv~f~~~~C~-~C~~~~~~l~~~~~~~~~------~~~~~~vd~~~~--------------------------~~~ 91 (141)
+|.++++|.=+.|| .|-.....+..+.+.... .-.|+.||.... ..+
T Consensus 139 Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~v 218 (280)
T KOG2792|consen 139 GKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQV 218 (280)
T ss_pred cceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHHH
Confidence 89999999999986 476666666555554432 136778886432 135
Q ss_pred HhhCCcccc--c-----------EEEEE---eCCeEEEEEecCCCHHHHHHHHHHHHhcc
Q psy11159 92 AMDYEVSAV--P-----------VLIAM---KNGKELDRLIGLQDIDKLKSFIDNLVEKQ 135 (141)
Q Consensus 92 ~~~~~v~~~--P-----------t~~~~---~~g~~~~~~~g~~~~~~l~~~i~~~~~~~ 135 (141)
|+.|.|--- | ++++| ++|+.+..+....+.+++.+-|.+++...
T Consensus 219 ak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~~y 278 (280)
T KOG2792|consen 219 AKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVASY 278 (280)
T ss_pred HHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHHhc
Confidence 555544311 1 23333 78888777777788999999998887654
No 247
>PHA03075 glutaredoxin-like protein; Provisional
Probab=93.60 E-value=0.14 Score=30.82 Aligned_cols=30 Identities=20% Similarity=0.480 Sum_probs=26.1
Q ss_pred CcEEEEEecCCChhhhhhhHHHHHHHHHhc
Q psy11159 46 TPVIVDFFATWCNPCKTLTPRLEAVIDEMK 75 (141)
Q Consensus 46 ~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~ 75 (141)
|.+++.|.-|.|+.|......+.++..+|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 458999999999999999999988877764
No 248
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=93.59 E-value=0.95 Score=27.33 Aligned_cols=56 Identities=20% Similarity=0.298 Sum_probs=33.1
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeC
Q psy11159 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKN 108 (141)
Q Consensus 48 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 108 (141)
+.+.|-.---+ .+.+.+..+.+.....-.- ..+.-+|.+.++|+|+.+|++++.++
T Consensus 25 ~~~V~RG~~~g---~~~~t~~~~~~l~~~~~~~--~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 25 VVVVFRGFPDG---SFKPTAKAIQELLRKDDPC--PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred cEEEEECCCCC---CHHHHHHHHHHHhhccCCC--cceeEChhHHhhCCceEcCEEEEEcC
Confidence 33445444333 5555555554444321100 23333689999999999999998866
No 249
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=93.56 E-value=0.62 Score=25.11 Aligned_cols=69 Identities=19% Similarity=0.115 Sum_probs=39.6
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCC-chhHHhhCCcccccEEEEEeCCeEEEEEecCCCHHHHHHHH
Q psy11159 50 VDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDE-LTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFI 128 (141)
Q Consensus 50 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i 128 (141)
..|+.++|+.|++.+-.+....-. .....+|... .+++.+......+|++. .+|..+. ....+.++|
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~----~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~l~------es~aI~~yL 69 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS----VEIIDVDPDNPPEDLAELNPYGTVPTLV--DRDLVLY------ESRIIMEYL 69 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc----cEEEEcCCCCCCHHHHhhCCCCCCCEEE--ECCEEEE------cHHHHHHHH
Confidence 467889999999988776554322 3333444433 23455545566789763 3443222 445566665
Q ss_pred HH
Q psy11159 129 DN 130 (141)
Q Consensus 129 ~~ 130 (141)
++
T Consensus 70 ~~ 71 (73)
T cd03059 70 DE 71 (73)
T ss_pred Hh
Confidence 54
No 250
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=93.53 E-value=0.1 Score=31.06 Aligned_cols=34 Identities=21% Similarity=0.106 Sum_probs=24.9
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCch
Q psy11159 50 VDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT 89 (141)
Q Consensus 50 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~ 89 (141)
..|+.++|+.|++.+..|.+- ++.|-.+|+.+++
T Consensus 2 ~iy~~~~C~~crka~~~L~~~------~i~~~~~di~~~p 35 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR------GVAYTFHDYRKDG 35 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------CCCeEEEecccCC
Confidence 568899999999988777664 4566666665543
No 251
>PRK12559 transcriptional regulator Spx; Provisional
Probab=92.96 E-value=0.18 Score=31.30 Aligned_cols=33 Identities=18% Similarity=0.380 Sum_probs=23.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCC
Q psy11159 49 IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDE 87 (141)
Q Consensus 49 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~ 87 (141)
+..|+.++|+.|++....|++- ++.+-.+|+.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~------gi~~~~~di~~ 34 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN------QIDYTEKNIVS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCeEEEEeeC
Confidence 4578899999999988766654 35555555543
No 252
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=92.94 E-value=1.2 Score=26.67 Aligned_cols=87 Identities=14% Similarity=0.192 Sum_probs=63.4
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHhcC--CEEEEEEeCCCchhHH----hhCCccc-ccEEEEE--eCCeEEE-E
Q psy11159 45 STPVIVDFFATWCNPCKTLTPRLEAVIDEMKG--KVVLAKVDIDELTDLA----MDYEVSA-VPVLIAM--KNGKELD-R 114 (141)
Q Consensus 45 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~~~~----~~~~v~~-~Pt~~~~--~~g~~~~-~ 114 (141)
+...++-|--.-.+.-..+.+.++++++++.. ++.|+.+|.|.-|-+. +.|+|.- -|.+=++ .+...+. .
T Consensus 20 ~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV~vtdadSvW~~ 99 (120)
T cd03074 20 DGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVVNVTDADSVWME 99 (120)
T ss_pred CCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCceeeEecccccceeEe
Confidence 56677888889999999999999999998864 5999999999877543 3455443 3877666 2223333 2
Q ss_pred Ee---cCCCHHHHHHHHHHH
Q psy11159 115 LI---GLQDIDKLKSFIDNL 131 (141)
Q Consensus 115 ~~---g~~~~~~l~~~i~~~ 131 (141)
.. ...+.++|..||+..
T Consensus 100 m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 100 MDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred cccccccCcHHHHHHHHHhh
Confidence 22 336889999999875
No 253
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=92.85 E-value=0.3 Score=26.34 Aligned_cols=56 Identities=18% Similarity=0.147 Sum_probs=34.5
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCC----CchhHHhhCCcccccEEEEEeCCe
Q psy11159 50 VDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDID----ELTDLAMDYEVSAVPVLIAMKNGK 110 (141)
Q Consensus 50 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~----~~~~~~~~~~v~~~Pt~~~~~~g~ 110 (141)
..|+.++|+.|++.+-.+....-. .....++.. ..+++.+......+|++.. .+|.
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~----~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~-~~~~ 61 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGID----VPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL-DDGT 61 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCC----ceEEEeecccCccCCHHHHhhCCCCCCCEEEe-CCCC
Confidence 357888999999988777665322 333444432 2344555556667899764 3443
No 254
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=92.82 E-value=0.22 Score=30.04 Aligned_cols=34 Identities=15% Similarity=0.325 Sum_probs=24.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCc
Q psy11159 49 IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDEL 88 (141)
Q Consensus 49 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~ 88 (141)
+..|+.++|+.|++....|++. ++.+-.+|+.++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~------gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH------QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCceEEEecCCC
Confidence 3468889999999988777763 456666666544
No 255
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=92.78 E-value=2.3 Score=29.58 Aligned_cols=59 Identities=20% Similarity=0.281 Sum_probs=38.4
Q ss_pred HhcCCCcEEEEEecCC------ChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhh----CCccc
Q psy11159 41 VKNASTPVIVDFFATW------CNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD----YEVSA 99 (141)
Q Consensus 41 i~~~~~~~lv~f~~~~------C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~----~~v~~ 99 (141)
+.+-++++-|.+|.+- -+.-..+...|+++...-++++.+-.+|.+.+++..++ +|+..
T Consensus 20 L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~ 88 (271)
T PF09822_consen 20 LKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQP 88 (271)
T ss_pred HHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCc
Confidence 3444667777666654 33334445555555555556899999999887776665 77776
No 256
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.46 E-value=1 Score=33.05 Aligned_cols=85 Identities=19% Similarity=0.314 Sum_probs=60.0
Q ss_pred Hhc-CCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeEEEEEecCC
Q psy11159 41 VKN-ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQ 119 (141)
Q Consensus 41 i~~-~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~ 119 (141)
+++ .+.+-+=.|++-.|..|-.....+.-.+-..+ ++.-..+|-.--.+-.+.-+|.++||+++ ||++.. .|..
T Consensus 111 ik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp-~I~H~~IdGa~Fq~Evear~IMaVPtvfl--nGe~fg--~GRm 185 (520)
T COG3634 111 IKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNP-RIKHTAIDGALFQDEVEARNIMAVPTVFL--NGEEFG--QGRM 185 (520)
T ss_pred HHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCC-CceeEEecchhhHhHHHhccceecceEEE--cchhhc--ccce
Confidence 444 36677888999999999888877776655555 67777787654444455558999999766 776544 3666
Q ss_pred CHHHHHHHHHH
Q psy11159 120 DIDKLKSFIDN 130 (141)
Q Consensus 120 ~~~~l~~~i~~ 130 (141)
+.+++...|..
T Consensus 186 tleeilaki~~ 196 (520)
T COG3634 186 TLEEILAKIDT 196 (520)
T ss_pred eHHHHHHHhcC
Confidence 77777666654
No 257
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=92.04 E-value=0.2 Score=32.99 Aligned_cols=35 Identities=26% Similarity=0.331 Sum_probs=27.5
Q ss_pred hHHhhCCcccccEEEEEeCCeEEEEEecCCCHHHHHHHH
Q psy11159 90 DLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFI 128 (141)
Q Consensus 90 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i 128 (141)
..+.+.||.++||+++ +|+ ....|..+.+.+.+.|
T Consensus 166 ~~a~~~gv~G~Pt~vv--~g~--~~~~G~~~~~~~~~~i 200 (201)
T cd03024 166 ARARQLGISGVPFFVF--NGK--YAVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHCCCCcCCEEEE--CCe--EeecCCCCHHHHHHHh
Confidence 4667889999999888 665 3467888998888766
No 258
>KOG1651|consensus
Probab=91.85 E-value=2.1 Score=27.68 Aligned_cols=90 Identities=12% Similarity=0.219 Sum_probs=61.3
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhcC-CEEEEEEeCCC--------chh----HHhhCCcc------------
Q psy11159 44 ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG-KVVLAKVDIDE--------LTD----LAMDYEVS------------ 98 (141)
Q Consensus 44 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~--------~~~----~~~~~~v~------------ 98 (141)
.++.++|.=-|+.|+....--..|..+.++|.+ ++.+...-|.+ +.+ ++.+|+..
T Consensus 33 rGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei~~f~~~r~~~~f~if~KidVNG~ 112 (171)
T KOG1651|consen 33 RGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEEILNFVKVRYGAEFPIFQKIDVNGD 112 (171)
T ss_pred CCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHHHHHHHHhccCCCCccEeEEecCCC
Confidence 488889999999999998777788888888864 46666555532 222 12223221
Q ss_pred -----------------------cccEEEEEeCCeEEEEEecCCCHHHHHHHHHHHHh
Q psy11159 99 -----------------------AVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVE 133 (141)
Q Consensus 99 -----------------------~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~ 133 (141)
.+--+++-++|+++.|+.-..+..+++.-|++++.
T Consensus 113 ~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~lL~ 170 (171)
T KOG1651|consen 113 NADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKDIEKLLA 170 (171)
T ss_pred CCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCccccchhHHHHhc
Confidence 12235666899999998877777777777777764
No 259
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=91.62 E-value=0.34 Score=28.99 Aligned_cols=58 Identities=16% Similarity=0.305 Sum_probs=37.8
Q ss_pred EEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCccc--ccEEEE-EeCCe
Q psy11159 51 DFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSA--VPVLIA-MKNGK 110 (141)
Q Consensus 51 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~--~Pt~~~-~~~g~ 110 (141)
.||..+|+.|......+.+... .+.+.|+.+......++.+.+++.. .-+.+. ..+|+
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDR--GGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCC--CCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 3899999999999988877722 2357777665445545556666552 333344 46776
No 260
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=91.59 E-value=2 Score=26.12 Aligned_cols=75 Identities=15% Similarity=0.067 Sum_probs=47.5
Q ss_pred CChhhhhhhHHHHHHHHHhcC-CEEEEEE-eCCCch-----------hHHhhCCcc--cccEEEEEeCCeEEEEEecCCC
Q psy11159 56 WCNPCKTLTPRLEAVIDEMKG-KVVLAKV-DIDELT-----------DLAMDYEVS--AVPVLIAMKNGKELDRLIGLQD 120 (141)
Q Consensus 56 ~C~~C~~~~~~l~~~~~~~~~-~~~~~~v-d~~~~~-----------~~~~~~~v~--~~Pt~~~~~~g~~~~~~~g~~~ 120 (141)
..+.=......+.+-...+.. ++.++.+ +..... .+.+.|++. ++-.+++-++|++..+...+.+
T Consensus 21 ~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG~vK~r~~~p~~ 100 (118)
T PF13778_consen 21 DDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKDGGVKLRWPEPID 100 (118)
T ss_pred CCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCCCcEEEecCCCCC
Confidence 444445555555553333332 4555554 333222 678888855 3345555599999999999999
Q ss_pred HHHHHHHHHH
Q psy11159 121 IDKLKSFIDN 130 (141)
Q Consensus 121 ~~~l~~~i~~ 130 (141)
.++|-..|.+
T Consensus 101 ~~~lf~~ID~ 110 (118)
T PF13778_consen 101 PEELFDTIDA 110 (118)
T ss_pred HHHHHHHHhC
Confidence 9999888865
No 261
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=91.40 E-value=0.49 Score=30.87 Aligned_cols=32 Identities=25% Similarity=0.510 Sum_probs=26.8
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhcCCEEE
Q psy11159 49 IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVL 80 (141)
Q Consensus 49 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~ 80 (141)
+.+|+.+.||.|-...+.+.++.+++++++.+
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v 34 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEV 34 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCCCceE
Confidence 66899999999999999999999998543333
No 262
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=91.31 E-value=0.4 Score=29.82 Aligned_cols=33 Identities=18% Similarity=0.371 Sum_probs=23.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCC
Q psy11159 49 IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDE 87 (141)
Q Consensus 49 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~ 87 (141)
+..|+.++|+.|++....|++- ++.|-.+|+.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~------~i~~~~~d~~~ 34 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH------QLSYKEQNLGK 34 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc------CCCeEEEECCC
Confidence 3568889999999987666553 46666666544
No 263
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=90.98 E-value=1.5 Score=23.64 Aligned_cols=51 Identities=18% Similarity=0.258 Sum_probs=32.6
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCC----chhHHhhCCcccccEEE
Q psy11159 50 VDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDE----LTDLAMDYEVSAVPVLI 104 (141)
Q Consensus 50 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~ 104 (141)
..|+.+.|+.|++.+-.+.+..-. +....+|..+ .+++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~----~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLE----LNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCC----CEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 458889999999877666654322 3444555422 24555555566889985
No 264
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=89.80 E-value=1 Score=29.24 Aligned_cols=43 Identities=23% Similarity=0.337 Sum_probs=31.1
Q ss_pred CCCcEEEEEecCCC-hhhhhhhHHHHHHHHHhc---CCEEEEEEeCC
Q psy11159 44 ASTPVIVDFFATWC-NPCKTLTPRLEAVIDEMK---GKVVLAKVDID 86 (141)
Q Consensus 44 ~~~~~lv~f~~~~C-~~C~~~~~~l~~~~~~~~---~~~~~~~vd~~ 86 (141)
.+|+++|.|.-..| ..|-.....+.++.++++ .++.++.|.+|
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD 97 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD 97 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence 48999999999999 678888777777766554 25666666555
No 265
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=89.21 E-value=2.9 Score=26.19 Aligned_cols=68 Identities=15% Similarity=0.199 Sum_probs=47.7
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccc-c-EEEEEeCCeEEE
Q psy11159 44 ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAV-P-VLIAMKNGKELD 113 (141)
Q Consensus 44 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~-P-t~~~~~~g~~~~ 113 (141)
.+++-.|.+|.-.|+.|......+.+... ++.+.|..+..+....+.+..++..- + ++++.++|+...
T Consensus 5 ~~~p~~vvlyDG~C~lC~~~vrfLi~~D~--~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~~ 74 (137)
T COG3011 5 MKKPDLVVLYDGVCPLCDGWVRFLIRRDQ--GGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLLV 74 (137)
T ss_pred CCCCCEEEEECCcchhHHHHHHHHHHhcc--CCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceEe
Confidence 46788899999999999987666655422 23688888888777777777665543 3 566667775443
No 266
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=88.92 E-value=0.74 Score=29.97 Aligned_cols=34 Identities=24% Similarity=0.445 Sum_probs=24.8
Q ss_pred hHHhhCCcccccEEEEEeCCeEEEEEecCCCHHHHHHHH
Q psy11159 90 DLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFI 128 (141)
Q Consensus 90 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i 128 (141)
..+.++||.++||+++ +|+ .+.|....+.+...|
T Consensus 158 ~~a~~~gi~gvPtfvv--~g~---~~~G~~~l~~~~~~l 191 (192)
T cd03022 158 EEAIARGVFGVPTFVV--DGE---MFWGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHcCCCcCCeEEE--CCe---eecccccHHHHHHHh
Confidence 4567889999999888 675 445776777666554
No 267
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=88.29 E-value=1.6 Score=31.71 Aligned_cols=77 Identities=13% Similarity=0.151 Sum_probs=45.8
Q ss_pred CChhhhhhhH----HHHHHHHHhcC---CEEEEEEeCC-Cch--hHHhhCCccccc-EEEEEeCCeEEEEEecCCCHHHH
Q psy11159 56 WCNPCKTLTP----RLEAVIDEMKG---KVVLAKVDID-ELT--DLAMDYEVSAVP-VLIAMKNGKELDRLIGLQDIDKL 124 (141)
Q Consensus 56 ~C~~C~~~~~----~l~~~~~~~~~---~~~~~~vd~~-~~~--~~~~~~~v~~~P-t~~~~~~g~~~~~~~g~~~~~~l 124 (141)
.||.|.+..- ...++.+.+.+ .+++..+-|- ..+ .-...+|+.+-+ ..++|.+|+.+.+..+..-.++|
T Consensus 270 sCPgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~kv~~~~~~~~l 349 (360)
T PRK00366 270 SCPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIKTLPEENIVEEL 349 (360)
T ss_pred ECCCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEeeeeChHhHHHHH
Confidence 3555654433 34445555543 3667766664 222 234566777654 78889999998887665445566
Q ss_pred HHHHHHHH
Q psy11159 125 KSFIDNLV 132 (141)
Q Consensus 125 ~~~i~~~~ 132 (141)
.+.|+++.
T Consensus 350 ~~~i~~~~ 357 (360)
T PRK00366 350 EAEIEAYA 357 (360)
T ss_pred HHHHHHHH
Confidence 66665543
No 268
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=87.58 E-value=5.7 Score=25.59 Aligned_cols=88 Identities=15% Similarity=0.198 Sum_probs=51.8
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHH-hcCC----EEEEEEe---------------------------CCCchhH
Q psy11159 44 ASTPVIVDFFATWCNPCKTLTPRLEAVIDE-MKGK----VVLAKVD---------------------------IDELTDL 91 (141)
Q Consensus 44 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~-~~~~----~~~~~vd---------------------------~~~~~~~ 91 (141)
.+|..+|.+.|-.-..-..-.|.++.+.+. ++.+ ..++-.| +|.+..+
T Consensus 36 ~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d~yqtttIiN~dDAi~gt~~fVrss~e~~kk~~p~s~~vlD~~G~~ 115 (160)
T PF09695_consen 36 PGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINLDDAIWGTGGFVRSSAEDSKKEFPWSQFVLDSNGVV 115 (160)
T ss_pred CCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCccceeEEEEEecccccccchHHHHHHHHHhhhhCCCcEEEEcCCCce
Confidence 377777777766655555666677776554 4421 2333222 1122222
Q ss_pred HhhCCcccc-cEEEEE-eCCeEEEEEecCCCHHHHHHHHHHH
Q psy11159 92 AMDYEVSAV-PVLIAM-KNGKELDRLIGLQDIDKLKSFIDNL 131 (141)
Q Consensus 92 ~~~~~v~~~-Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~~ 131 (141)
.+.|+...- -.++++ ++|++.+...|..+.+++.+.|+-+
T Consensus 116 ~~aW~L~~~~SaiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~Ll 157 (160)
T PF09695_consen 116 RKAWQLQEESSAIIVLDKQGKVQFVKEGALSPAEVQQVIALL 157 (160)
T ss_pred eccccCCCCCceEEEEcCCccEEEEECCCCCHHHHHHHHHHH
Confidence 333332222 234444 8999999999999999999888654
No 269
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=87.05 E-value=5.4 Score=24.79 Aligned_cols=107 Identities=11% Similarity=0.200 Sum_probs=57.0
Q ss_pred eeEEeChhhHHHHHhcCCCcEEEEEecCCChhh-hhhhHHHHHHHHH--hcCCEEEEEEeCCCch-hHHhhCC---cccc
Q psy11159 28 SFKVQDMNDFEKKVKNASTPVIVDFFATWCNPC-KTLTPRLEAVIDE--MKGKVVLAKVDIDELT-DLAMDYE---VSAV 100 (141)
Q Consensus 28 ~~~~~~~~~~~~~i~~~~~~~lv~f~~~~C~~C-~~~~~~l~~~~~~--~~~~~~~~~vd~~~~~-~~~~~~~---v~~~ 100 (141)
..++.|.++.++.+.+....++| +--+-|+=- ...+|-....... -++++.-+....|+.. +-++.|- -.+-
T Consensus 18 f~eL~T~e~Vd~~~~~~~GTtlV-vVNSVCGCAag~ARPa~~~al~~~kkPD~lvTVFAGqDkEAt~~aR~yf~~~pPSS 96 (136)
T PF06491_consen 18 FEELTTAEEVDEALKNKEGTTLV-VVNSVCGCAAGNARPAAAMALQNDKKPDHLVTVFAGQDKEATAKAREYFEPYPPSS 96 (136)
T ss_dssp -EE--SHHHHHHHHHH--SEEEE-EEE-SSHHHHHTHHHHHHHHHHHSS--SEEEEEETTTSHHHHHHHHHTSTTS---S
T ss_pred ccccCCHHHHHHHHhCCCCcEEE-EEeccccccccccCHHHHHHHhCCCCCCceEEeccCCCHHHHHHHHHhcCCCCCCC
Confidence 45677999999988755554554 455667533 3556666554332 3344433333333221 1223332 3356
Q ss_pred cEEEEEeCCeEEEEEecC----CCHHHHHHHHHHHHhcc
Q psy11159 101 PVLIAMKNGKELDRLIGL----QDIDKLKSFIDNLVEKQ 135 (141)
Q Consensus 101 Pt~~~~~~g~~~~~~~g~----~~~~~l~~~i~~~~~~~ 135 (141)
|++-+|++|+.+.....- .+.+++.+-|....+++
T Consensus 97 PS~ALfKdGelvh~ieRh~IEGr~a~~Ia~~L~~af~~~ 135 (136)
T PF06491_consen 97 PSIALFKDGELVHFIERHHIEGRPAEEIAENLQDAFDEY 135 (136)
T ss_dssp SEEEEEETTEEEEEE-GGGTTTS-HHHHHHHHHHHHHHH
T ss_pred chheeeeCCEEEEEeehhhcCCCCHHHHHHHHHHHHHhh
Confidence 899999999988765422 37788888888777654
No 270
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=87.00 E-value=1.7 Score=29.07 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=32.5
Q ss_pred chhHHhhCCcccccEEEEEeCCeEEEEEecCCCHHHHHHHHHH
Q psy11159 88 LTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDN 130 (141)
Q Consensus 88 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 130 (141)
+|.+.++|+|..+|++++.. +.......|..+...-.+.+.+
T Consensus 151 DP~lF~~F~I~~VPafVv~C-~~~yD~I~GNIsl~~ALe~iA~ 192 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVFC-SQGYDIIRGNLRVGQALEKVAA 192 (212)
T ss_pred CHHHHHhcCCccccEEEEEc-CCCCCEEEecccHHHHHHHHHh
Confidence 68899999999999999974 3456788888887765555554
No 271
>KOG2244|consensus
Probab=86.63 E-value=1.1 Score=34.58 Aligned_cols=73 Identities=18% Similarity=0.312 Sum_probs=50.1
Q ss_pred ChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHH-H--HHHHHHhcCCEEEEEEeCCCchhHHh--------hCCccccc
Q psy11159 33 DMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPR-L--EAVIDEMKGKVVLAKVDIDELTDLAM--------DYEVSAVP 101 (141)
Q Consensus 33 ~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~-l--~~~~~~~~~~~~~~~vd~~~~~~~~~--------~~~v~~~P 101 (141)
.++.|++ ++.++||+++-..-+.|..|+.|... + ++.++.+..++.-++||.++-|++-+ ..|-.|.|
T Consensus 101 gqeaf~k-ar~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~GGWP 179 (786)
T KOG2244|consen 101 GQEAFNK-ARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGGGWP 179 (786)
T ss_pred hHHHHHH-HHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCCCCc
Confidence 4555665 57789999999999999999988542 2 33555554456667788877776544 34566778
Q ss_pred EEEEE
Q psy11159 102 VLIAM 106 (141)
Q Consensus 102 t~~~~ 106 (141)
.-++.
T Consensus 180 msV~L 184 (786)
T KOG2244|consen 180 MSVFL 184 (786)
T ss_pred eeEEe
Confidence 55554
No 272
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=86.51 E-value=2.6 Score=23.97 Aligned_cols=53 Identities=13% Similarity=0.087 Sum_probs=33.1
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCc-hhHHhhCCcccccEEEE
Q psy11159 49 IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDEL-TDLAMDYEVSAVPVLIA 105 (141)
Q Consensus 49 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~v~~~Pt~~~ 105 (141)
+..|+.+.|+.|++.+-.+....- .+.+..++.... +++.+......+|++..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl----~~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNI----PHEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCC----CCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 555778889999988766655422 244455554433 33555555677899764
No 273
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=86.34 E-value=2.4 Score=30.68 Aligned_cols=81 Identities=12% Similarity=0.170 Sum_probs=52.2
Q ss_pred CChhhhhhhHHH----HHHHHHhcC---CEEEEEEeCCCch---hHHhhCCccc--ccEEEEEeCCeEEEEEecCCCHHH
Q psy11159 56 WCNPCKTLTPRL----EAVIDEMKG---KVVLAKVDIDELT---DLAMDYEVSA--VPVLIAMKNGKELDRLIGLQDIDK 123 (141)
Q Consensus 56 ~C~~C~~~~~~l----~~~~~~~~~---~~~~~~vd~~~~~---~~~~~~~v~~--~Pt~~~~~~g~~~~~~~g~~~~~~ 123 (141)
.||.|-+..-.+ .++.+++.. .+.+..+.|--|. .-...+|+.+ -|...+|.+|+.+.+..+..-.++
T Consensus 263 aCP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~~~~~~~~~ee 342 (361)
T COG0821 263 ACPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIKKLPEEDIVEE 342 (361)
T ss_pred ECCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEEecChhhHHHH
Confidence 488887664444 333333321 2555555543221 2234556654 478999999999999888877889
Q ss_pred HHHHHHHHHhccc
Q psy11159 124 LKSFIDNLVEKQS 136 (141)
Q Consensus 124 l~~~i~~~~~~~~ 136 (141)
|...++++.++..
T Consensus 343 l~~~i~~~~~~~~ 355 (361)
T COG0821 343 LEALIEAYAEERD 355 (361)
T ss_pred HHHHHHHHHHHhh
Confidence 9999998887653
No 274
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=85.79 E-value=1.7 Score=31.58 Aligned_cols=75 Identities=16% Similarity=0.228 Sum_probs=42.3
Q ss_pred ChhhhhhhHHHHHHHHHhc-------CCEEEEEEeCCCch-hH--HhhCCcc-ccc-EEEEEeCCeEEEEE-ecCCCHHH
Q psy11159 57 CNPCKTLTPRLEAVIDEMK-------GKVVLAKVDIDELT-DL--AMDYEVS-AVP-VLIAMKNGKELDRL-IGLQDIDK 123 (141)
Q Consensus 57 C~~C~~~~~~l~~~~~~~~-------~~~~~~~vd~~~~~-~~--~~~~~v~-~~P-t~~~~~~g~~~~~~-~g~~~~~~ 123 (141)
||.|-+..-.+.++.++.+ ..+++.-+-|--|. .- -..+|+- +-+ ...+|++|+.+.+. ....-.++
T Consensus 271 CPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v~k~~~ee~~vd~ 350 (359)
T PF04551_consen 271 CPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVVKKVIPEEEIVDE 350 (359)
T ss_dssp ----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEEEEE-CSTCHHHH
T ss_pred CCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEEEecCCHHHHHHH
Confidence 8888776555555544332 35888888886553 11 2345665 444 58889999999887 55545566
Q ss_pred HHHHHHHH
Q psy11159 124 LKSFIDNL 131 (141)
Q Consensus 124 l~~~i~~~ 131 (141)
|.+.|+++
T Consensus 351 L~~~I~~~ 358 (359)
T PF04551_consen 351 LIELIEEH 358 (359)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 76666654
No 275
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=85.63 E-value=8.4 Score=25.67 Aligned_cols=88 Identities=22% Similarity=0.283 Sum_probs=55.3
Q ss_pred CCcEEEEEe-cCCChhhhhhhHHHHHHHHHhcC-CEEEEEEeCCC----------------------------chhHHhh
Q psy11159 45 STPVIVDFF-ATWCNPCKTLTPRLEAVIDEMKG-KVVLAKVDIDE----------------------------LTDLAMD 94 (141)
Q Consensus 45 ~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~~ 94 (141)
+|.+++.|| ++.-+.|-.....+.+..++++. ++.++.+.+|. +.++++.
T Consensus 33 gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ 112 (194)
T COG0450 33 GKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARA 112 (194)
T ss_pred CcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHH
Confidence 477777776 45566776666666666666653 46666666543 4468888
Q ss_pred CCcccc----c---EEEEEeCCeEEEEEecC----CCHHHHHHHHHHHH
Q psy11159 95 YEVSAV----P---VLIAMKNGKELDRLIGL----QDIDKLKSFIDNLV 132 (141)
Q Consensus 95 ~~v~~~----P---t~~~~~~g~~~~~~~g~----~~~~~l~~~i~~~~ 132 (141)
||+..- . +|++-++|.+....... .+.+++.+.|+.+.
T Consensus 113 ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAlq 161 (194)
T COG0450 113 YGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDALQ 161 (194)
T ss_pred cCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHHH
Confidence 887642 1 34444777665533322 37788888888775
No 276
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=83.85 E-value=11 Score=25.39 Aligned_cols=79 Identities=18% Similarity=0.350 Sum_probs=49.0
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCC--C----------------chhHHhhCCccc--ccEEEEEeC
Q psy11159 49 IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDID--E----------------LTDLAMDYEVSA--VPVLIAMKN 108 (141)
Q Consensus 49 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~--~----------------~~~~~~~~~v~~--~Pt~~~~~~ 108 (141)
|=.|++--|..|-.....|.+++.+ + ++......+| . .....+.++..+ +|.+++ |
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~-~-~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV--n 77 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAAR-P-DVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV--N 77 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHH-T-SSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE--T
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcC-C-CEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE--C
Confidence 4468888999999999999999988 3 4444444332 1 123455555554 599777 7
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHhc
Q psy11159 109 GKELDRLIGLQDIDKLKSFIDNLVEK 134 (141)
Q Consensus 109 g~~~~~~~g~~~~~~l~~~i~~~~~~ 134 (141)
|+.- ..|. +...+...|.+....
T Consensus 78 G~~~--~~g~-~~~~~~~ai~~~~~~ 100 (202)
T PF06764_consen 78 GREH--RVGS-DRAAVEAAIQAARAR 100 (202)
T ss_dssp TTEE--EETT--HHHHHHHHHHHHHT
T ss_pred Ceee--eecc-CHHHHHHHHHHhhcc
Confidence 7543 3455 888899999888765
No 277
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=82.95 E-value=7 Score=22.59 Aligned_cols=74 Identities=16% Similarity=0.293 Sum_probs=40.1
Q ss_pred EecC-CChhhhhh------hHHHHH-HHHHhcCC-EEEEEEeCCCchh------HHhhC--CcccccEEEEEeCCeEEEE
Q psy11159 52 FFAT-WCNPCKTL------TPRLEA-VIDEMKGK-VVLAKVDIDELTD------LAMDY--EVSAVPVLIAMKNGKELDR 114 (141)
Q Consensus 52 f~~~-~C~~C~~~------~~~l~~-~~~~~~~~-~~~~~vd~~~~~~------~~~~~--~v~~~Pt~~~~~~g~~~~~ 114 (141)
|.|. -|+.|..+ ...|+. +.++|+++ +.+.++|+.+.++ +.++. .-.-.|-+++ +|+.+.
T Consensus 3 YGAe~~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i--~~eiV~- 79 (93)
T PF07315_consen 3 YGAEVICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVI--NDEIVA- 79 (93)
T ss_dssp EE-SS--GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEE--TTEEEE-
T ss_pred ccccccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEE--CCEEEe-
Confidence 4443 58888765 233433 46778865 9999999976443 22222 2233687666 787665
Q ss_pred EecCCCHHHHHHHHH
Q psy11159 115 LIGLQDIDKLKSFID 129 (141)
Q Consensus 115 ~~g~~~~~~l~~~i~ 129 (141)
.|......+.++++
T Consensus 80 -EGnp~LK~I~~~~e 93 (93)
T PF07315_consen 80 -EGNPQLKDIYEEME 93 (93)
T ss_dssp -ESS--HHHHHHHHH
T ss_pred -cCCccHHHHHHhhC
Confidence 47777777776653
No 278
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=82.65 E-value=2.1 Score=25.83 Aligned_cols=33 Identities=18% Similarity=0.109 Sum_probs=23.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCC
Q psy11159 49 IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDE 87 (141)
Q Consensus 49 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~ 87 (141)
+..|+.+.|+.|++....|++- ++.|-.+|+-+
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~------gi~~~~~d~~~ 34 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA------GHEVEVRDLLT 34 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEeehhc
Confidence 3568899999999888766654 35555566543
No 279
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=81.80 E-value=3.2 Score=28.44 Aligned_cols=43 Identities=16% Similarity=0.348 Sum_probs=35.2
Q ss_pred cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcC----CEEEEEEeC
Q psy11159 43 NASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG----KVVLAKVDI 85 (141)
Q Consensus 43 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~----~~~~~~vd~ 85 (141)
..++.+||-+-..+|..|..-...|+.+..++.+ ++.|+.|+-
T Consensus 24 ~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~ 70 (238)
T PF04592_consen 24 SLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNH 70 (238)
T ss_pred cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcC
Confidence 3488999999999999999988888888766542 588888874
No 280
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=81.72 E-value=6.5 Score=21.38 Aligned_cols=57 Identities=14% Similarity=0.022 Sum_probs=34.0
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCC----CchhHHhhCCcccccEEEEEeCCeEE
Q psy11159 50 VDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDID----ELTDLAMDYEVSAVPVLIAMKNGKEL 112 (141)
Q Consensus 50 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~----~~~~~~~~~~v~~~Pt~~~~~~g~~~ 112 (141)
..|+.+.|+.|++.+=.+.+..- ...+..+|.. ..+++.+.-.-..+|++. .+|..+
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl----~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~~l 62 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGL----RCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDNII 62 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCC----CCEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCEEE
Confidence 46788889999887754444432 2444555542 233455555566789875 466543
No 281
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=81.37 E-value=2 Score=27.98 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=17.1
Q ss_pred hHHhhCCcccccEEEEEeCCe
Q psy11159 90 DLAMDYEVSAVPVLIAMKNGK 110 (141)
Q Consensus 90 ~~~~~~~v~~~Pt~~~~~~g~ 110 (141)
..+.++||.++||+++..++.
T Consensus 160 ~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 160 KLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHcCCCccCEEEEEeCCe
Confidence 456788999999999986665
No 282
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=78.91 E-value=7.8 Score=20.55 Aligned_cols=56 Identities=18% Similarity=0.110 Sum_probs=32.9
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCC----chhHHhhCCcccccEEEEEeCCeE
Q psy11159 50 VDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDE----LTDLAMDYEVSAVPVLIAMKNGKE 111 (141)
Q Consensus 50 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~g~~ 111 (141)
..|+.+.|+.|.+.+-.+....-. .....++... .+++.+......+|++.. +|..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~~----~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~ 61 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGIP----YEWVEVDILKGETRTPEFLALNPNGEVPVLEL--DGRV 61 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCC----cEEEEecCCCcccCCHHHHHhCCCCCCCEEEE--CCEE
Confidence 357888999999887666554322 3344454322 234444444567898764 4543
No 283
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=78.44 E-value=12 Score=22.44 Aligned_cols=43 Identities=12% Similarity=0.193 Sum_probs=35.7
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhcC-CEEEEEEeCCC
Q psy11159 44 ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG-KVVLAKVDIDE 87 (141)
Q Consensus 44 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~ 87 (141)
.+++++|.=.|+.|+.-. -...|.++.+++.+ ++.++..-+++
T Consensus 20 ~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 20 KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred CCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 378999999999999999 77799999999973 58888777653
No 284
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=77.44 E-value=3.4 Score=24.88 Aligned_cols=33 Identities=12% Similarity=0.094 Sum_probs=24.0
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCc
Q psy11159 50 VDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDEL 88 (141)
Q Consensus 50 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~ 88 (141)
..|+.+.|..|++....+++- ++.+..+|.-++
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~------~i~~~~~di~~~ 34 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK------GIEPEVVKYLKN 34 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC------CCCeEEEeccCC
Confidence 468899999999988777763 455556665443
No 285
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=76.70 E-value=3.7 Score=24.61 Aligned_cols=33 Identities=12% Similarity=0.152 Sum_probs=23.2
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCc
Q psy11159 50 VDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDEL 88 (141)
Q Consensus 50 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~ 88 (141)
..|+.+.|..|++....+++- ++.|..+|.-+.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~------~i~~~~~di~~~ 34 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA------GIEPEIVEYLKT 34 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC------CCCeEEEecccC
Confidence 468899999999987666653 455556665443
No 286
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=76.52 E-value=4.5 Score=27.00 Aligned_cols=38 Identities=13% Similarity=0.410 Sum_probs=24.2
Q ss_pred HHhhCCcccccEEEEEeCCeEEEEEecCCCHHHHHHHH
Q psy11159 91 LAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFI 128 (141)
Q Consensus 91 ~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i 128 (141)
-+.+.||.|+|++++-.++..-..+.|.-..+.+.+++
T Consensus 171 ~A~~~Gv~GVP~fvv~~~~~~~e~fwG~Drl~~~~~~l 208 (209)
T cd03021 171 EALKYGAFGLPWIVVTNDKGKTEMFFGSDRFEQVADFL 208 (209)
T ss_pred HHHHcCCCCCCEEEEEcCCCCccceecCCcHHHHHHHh
Confidence 44567999999988854322223566775566665554
No 287
>KOG0912|consensus
Probab=75.26 E-value=16 Score=26.43 Aligned_cols=96 Identities=13% Similarity=0.178 Sum_probs=56.1
Q ss_pred eeeEEeChhhHHHHHhcCCCcEEEEEecCCChhhhh-hhHHHHHHHHHhcC---CEEEEEEeCCCchhHHhhCC--cccc
Q psy11159 27 TSFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKT-LTPRLEAVIDEMKG---KVVLAKVDIDELTDLAMDYE--VSAV 100 (141)
Q Consensus 27 ~~~~~~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~-~~~~l~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~--v~~~ 100 (141)
+.+...|+++.++. .+.|.|.+|+|.-+......+ +... +++++.+ .+.++..|...-..-...+| -...
T Consensus 210 pLVREiTFeN~EEL-tEEGlPflILf~~kdD~~s~k~F~~a---I~ReL~~e~~~in~l~ADG~~f~hpL~HlgKs~~DL 285 (375)
T KOG0912|consen 210 PLVREITFENAEEL-TEEGLPFLILFRKKDDKESEKIFKNA---IARELDDETLAINFLTADGKVFKHPLRHLGKSPDDL 285 (375)
T ss_pred hhhhhhhhccHHHH-hhcCCceEEEEecCCcccHHHHHHHH---HHHHhhhhhhccceeecCcceecchHHHhCCCcccC
Confidence 45667788888884 567999999999988766543 3323 3333332 37777777765433333333 2234
Q ss_pred cEE--------EEEeCCeEEEEEecCCCHHHHHHHHHHHH
Q psy11159 101 PVL--------IAMKNGKELDRLIGLQDIDKLKSFIDNLV 132 (141)
Q Consensus 101 Pt~--------~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 132 (141)
|.+ .+|++++.+ ..+..|.+|+.++-
T Consensus 286 PviaIDsF~Hmylfp~f~di------~~pGkLkqFv~DL~ 319 (375)
T KOG0912|consen 286 PVIAIDSFRHMYLFPDFNDI------NIPGKLKQFVADLH 319 (375)
T ss_pred cEEEeeccceeeecCchhhh------cCccHHHHHHHHHh
Confidence 543 334333222 23447888887763
No 288
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=75.18 E-value=13 Score=21.10 Aligned_cols=61 Identities=15% Similarity=0.321 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeEEEEEecCCCHHHHHHHHHHHHh
Q psy11159 66 RLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVE 133 (141)
Q Consensus 66 ~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~ 133 (141)
.|.+++..+++ +..+.+..+.+.-+.. ..-.++.+|.+|+.+. .|..+.+++.+.+++..+
T Consensus 20 dL~~la~~~~~----~~YePe~fpgl~~r~~-~p~~t~~IF~sGki~i--tGaks~~~~~~a~~~i~~ 80 (86)
T PF00352_consen 20 DLEELAEELEN----VEYEPERFPGLIYRLR-NPKATVLIFSSGKIVI--TGAKSEEEAKKAIEKILP 80 (86)
T ss_dssp -HHHHHHHSTT----EEEETTTESSEEEEET-TTTEEEEEETTSEEEE--EEESSHHHHHHHHHHHHH
T ss_pred CHHHHHhhccC----cEEeeccCCeEEEeec-CCcEEEEEEcCCEEEE--EecCCHHHHHHHHHHHHH
Confidence 45666666542 3445454443322222 1135889999998655 466688888877777654
No 289
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=75.12 E-value=17 Score=24.78 Aligned_cols=75 Identities=21% Similarity=0.265 Sum_probs=49.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeEEEEEecCCCHHHHHHHH
Q psy11159 49 IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFI 128 (141)
Q Consensus 49 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i 128 (141)
+=.|.--.|..|......+++ ....+ ++.| ++....+...-+-+|-++|.+++ +|+.+ +.++.++++++..+
T Consensus 13 VkI~~HktC~ssy~Lf~~L~n-kgll~-~Vki--i~a~~p~f~~~~~~V~SvP~Vf~--DGel~--~~dpVdp~~ies~~ 84 (265)
T COG5494 13 VKIFTHKTCVSSYMLFEYLEN-KGLLG-KVKI--IDAELPPFLAFEKGVISVPSVFI--DGELV--YADPVDPEEIESIL 84 (265)
T ss_pred EEEEEecchHHHHHHHHHHHh-cCCCC-CceE--EEcCCChHHHhhcceeecceEEE--cCeEE--EcCCCCHHHHHHHH
Confidence 444666778888776655544 11122 4554 56667777777778999999655 78754 45777888888877
Q ss_pred HHH
Q psy11159 129 DNL 131 (141)
Q Consensus 129 ~~~ 131 (141)
+-.
T Consensus 85 ~G~ 87 (265)
T COG5494 85 SGQ 87 (265)
T ss_pred cCc
Confidence 654
No 290
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=74.53 E-value=13 Score=25.61 Aligned_cols=84 Identities=20% Similarity=0.287 Sum_probs=53.7
Q ss_pred cEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEE--EEeC----------------CCchhHHhhCCcccccEEEEEeC
Q psy11159 47 PVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLA--KVDI----------------DELTDLAMDYEVSAVPVLIAMKN 108 (141)
Q Consensus 47 ~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~--~vd~----------------~~~~~~~~~~~v~~~Pt~~~~~~ 108 (141)
-+|=.|++--|..|-.....+.+++++- ++.-. .||. +......+.|+-.+++|=-.+-+
T Consensus 43 ~VVELfTSQGCsSCPPAd~~l~k~a~~~--~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavvn 120 (261)
T COG5429 43 GVVELFTSQGCSSCPPADANLAKLADDP--GVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVVN 120 (261)
T ss_pred eEEEEeecCCcCCCChHHHHHHHhccCC--CEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchheee
Confidence 3455677788999999998888888773 23222 3443 22335677778777755444447
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHhcc
Q psy11159 109 GKELDRLIGLQDIDKLKSFIDNLVEKQ 135 (141)
Q Consensus 109 g~~~~~~~g~~~~~~l~~~i~~~~~~~ 135 (141)
|+... .|. +..+|.+.|+..-+..
T Consensus 121 Gr~~~--~Ga-d~~~i~~~i~a~~~~g 144 (261)
T COG5429 121 GRVHA--NGA-DPGAIEDAIAAMARRG 144 (261)
T ss_pred chhhh--cCC-CHHHHHHHHHHhhccc
Confidence 75433 344 7888888888766543
No 291
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=74.51 E-value=5.6 Score=23.99 Aligned_cols=50 Identities=18% Similarity=0.358 Sum_probs=33.9
Q ss_pred CChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchh-HHhhCC--cccccEEEEE
Q psy11159 56 WCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTD-LAMDYE--VSAVPVLIAM 106 (141)
Q Consensus 56 ~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~--v~~~Pt~~~~ 106 (141)
.|++|..+...|...-..-. .+.+.+|+...... +....| -++.|++++-
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~-~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~ 75 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRE-RLDVRRVDFPRPRQAVIALLGEANQSLPVLVLA 75 (112)
T ss_pred ECCchHHHHhHHhhChhhhh-cccEEEeCCCCchHHHHHHhChhccCCCEEEeC
Confidence 49999999888766544333 68888998876542 333333 4678987664
No 292
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=71.72 E-value=9.9 Score=24.61 Aligned_cols=33 Identities=15% Similarity=0.061 Sum_probs=25.9
Q ss_pred EEecCCChhhhhhhHHHHHHHHHhcCCEEEEEE
Q psy11159 51 DFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKV 83 (141)
Q Consensus 51 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v 83 (141)
.|+...||.|-...+.+.++..+++-.+.+..+
T Consensus 3 ~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~ 35 (192)
T cd03022 3 FYFDFSSPYSYLAHERLPALAARHGATVRYRPI 35 (192)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHhCCeeEEeee
Confidence 577789999999999999999888644454433
No 293
>KOG1364|consensus
Probab=71.68 E-value=8.7 Score=27.97 Aligned_cols=57 Identities=18% Similarity=0.342 Sum_probs=44.9
Q ss_pred EEEEEEeCCCchhHHhhCCcccccEEEEE--eCCeEEEEEecCCCHHHHHHHHHHHHhc
Q psy11159 78 VVLAKVDIDELTDLAMDYEVSAVPVLIAM--KNGKELDRLIGLQDIDKLKSFIDNLVEK 134 (141)
Q Consensus 78 ~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~--~~g~~~~~~~g~~~~~~l~~~i~~~~~~ 134 (141)
+-.+..|..+...+..-|.+..+|.+.++ ..|+.+.+..|...+++|..-+.+.++.
T Consensus 133 wllV~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~~ 191 (356)
T KOG1364|consen 133 WLLVLDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFIDS 191 (356)
T ss_pred EEEEeeccCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHHhc
Confidence 45556666666778889999999988888 5788888888888888888888887754
No 294
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=69.85 E-value=7 Score=23.77 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=18.1
Q ss_pred EEEEecCCChhhhhhhHHHHHH
Q psy11159 49 IVDFFATWCNPCKTLTPRLEAV 70 (141)
Q Consensus 49 lv~f~~~~C~~C~~~~~~l~~~ 70 (141)
+..|+.+.|..|+..+..+++-
T Consensus 3 itiy~~p~C~t~rka~~~L~~~ 24 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEH 24 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 5678899999999988777664
No 295
>KOG0911|consensus
Probab=69.22 E-value=9.1 Score=26.12 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=32.9
Q ss_pred CCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCC-cccccEE-EEEeCCeEE
Q psy11159 55 TWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYE-VSAVPVL-IAMKNGKEL 112 (141)
Q Consensus 55 ~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~-v~~~Pt~-~~~~~g~~~ 112 (141)
|.|+..+.....+.+. ++.|...|+-.+.++.+... ...+||+ -+|-+|+-+
T Consensus 152 P~CGFS~~~v~iL~~~------nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFi 205 (227)
T KOG0911|consen 152 PKCGFSRQLVGILQSH------NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFI 205 (227)
T ss_pred ccccccHHHHHHHHHc------CCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEec
Confidence 6788888777666654 57788899988888776543 2334443 122377543
No 296
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=68.73 E-value=31 Score=22.86 Aligned_cols=61 Identities=20% Similarity=0.120 Sum_probs=36.3
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCc-hhHHhhCCcccccEEEEEeCCeE
Q psy11159 45 STPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDEL-TDLAMDYEVSAVPVLIAMKNGKE 111 (141)
Q Consensus 45 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~v~~~Pt~~~~~~g~~ 111 (141)
+...+..|+.+.|+.|.+.+=.+.+..- .+....+|.... +++.+..-...+|++. .+|..
T Consensus 7 ~~~~~~Ly~~~~s~~~~rv~~~L~e~gl----~~e~~~v~~~~~~~~~~~~nP~g~VPvL~--~~g~~ 68 (211)
T PRK09481 7 KRSVMTLFSGPTDIYSHQVRIVLAEKGV----SVEIEQVEKDNLPQDLIDLNPYQSVPTLV--DRELT 68 (211)
T ss_pred CCCeeEEeCCCCChhHHHHHHHHHHCCC----CCEEEeCCcccCCHHHHHhCCCCCCCEEE--ECCEE
Confidence 3444556667789999988866655422 244555665432 3455544456789975 35543
No 297
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=68.61 E-value=4.9 Score=29.15 Aligned_cols=62 Identities=16% Similarity=0.107 Sum_probs=34.1
Q ss_pred CChhhhhhhH----HHHHHHHHhc---CCEEEEEEeCCCch---hHHhhCCcccc-c-EEEEEeCCeEEEEEec
Q psy11159 56 WCNPCKTLTP----RLEAVIDEMK---GKVVLAKVDIDELT---DLAMDYEVSAV-P-VLIAMKNGKELDRLIG 117 (141)
Q Consensus 56 ~C~~C~~~~~----~l~~~~~~~~---~~~~~~~vd~~~~~---~~~~~~~v~~~-P-t~~~~~~g~~~~~~~g 117 (141)
.||.|-+..- ...++.+.+. ..+++.-+.|--|. .-...+||.+- + ..++|++|+.+.+..+
T Consensus 261 SCPtCGR~~~dl~~~~~~ve~~l~~~~~~l~VAVMGCvVNGPGEak~ADiGIaggg~g~~~lF~~G~~~~kv~~ 334 (346)
T TIGR00612 261 ACPSCGRTGFDVEKVVRRVQEALFHLKTPLKVAVMGCVVNGPGEAKHADIGISGGGTGSAILFKRGKPKAKQPE 334 (346)
T ss_pred ECCCCCCcCCCHHHHHHHHHHHHhcCCCCCEEEEECceecCCchhhccCeeeecCCCCceEEEECCEEeEecCH
Confidence 3666654433 3344434333 34777767664332 12345666654 3 6788899988766443
No 298
>KOG1422|consensus
Probab=66.12 E-value=39 Score=22.99 Aligned_cols=67 Identities=24% Similarity=0.319 Sum_probs=41.5
Q ss_pred CChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhC-CcccccEEEEEeCCeEEEEEecCCCHHHHHHHHHHHHhc
Q psy11159 56 WCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDY-EVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEK 134 (141)
Q Consensus 56 ~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~-~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~ 134 (141)
.|+.|+++.-.|. .+-. .+.+-.||..+.++..+.. .-...|.+.+ +|+. ..+.+.++++|++.+..
T Consensus 20 dcpf~qr~~m~L~---~k~~-~f~vttVd~~~kp~~f~~~sp~~~~P~l~~--d~~~------~tDs~~Ie~~Lee~l~~ 87 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LKGV-PFKVTTVDLSRKPEWFLDISPGGKPPVLKF--DEKW------VTDSDKIEEFLEEKLPP 87 (221)
T ss_pred CChhHHHHHHHHH---HcCC-CceEEEeecCCCcHHHHhhCCCCCCCeEEe--CCce------eccHHHHHHHHHHhcCC
Confidence 5788877665554 2222 5778889998877655443 4445565444 4432 33677888888887653
No 299
>COG3411 Ferredoxin [Energy production and conversion]
Probab=65.83 E-value=19 Score=19.38 Aligned_cols=30 Identities=17% Similarity=0.285 Sum_probs=23.5
Q ss_pred cEEEEEeCCeEEEEEecCCCHHHHHHHHHHHHhc
Q psy11159 101 PVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEK 134 (141)
Q Consensus 101 Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~ 134 (141)
|++++|.+|- ..+..+.++..+.+++++..
T Consensus 18 Pvl~vYpegv----WY~~V~p~~a~rIv~~hl~~ 47 (64)
T COG3411 18 PVLVVYPEGV----WYTRVDPEDARRIVQSHLLG 47 (64)
T ss_pred CEEEEecCCe----eEeccCHHHHHHHHHHHHhC
Confidence 8999999882 23455889999999998864
No 300
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=65.49 E-value=20 Score=21.76 Aligned_cols=37 Identities=14% Similarity=0.199 Sum_probs=24.4
Q ss_pred HHhhCCcccccEEEEEeCCeEEEEEecCCCHHHHHHHHHHH
Q psy11159 91 LAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNL 131 (141)
Q Consensus 91 ~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 131 (141)
-+..+||.++|.++|- ++ .-..|..+...-...+++.
T Consensus 75 ~Aw~lgi~k~PAVVfD--~~--~VVYG~tDV~~A~~~~~~~ 111 (114)
T PF07511_consen 75 DAWSLGITKYPAVVFD--DR--YVVYGETDVARALARIEQW 111 (114)
T ss_pred HHHHhCccccCEEEEc--CC--eEEecccHHHHHHHHHHHH
Confidence 3568899999997774 33 3345776666555555544
No 301
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=64.52 E-value=25 Score=20.30 Aligned_cols=67 Identities=21% Similarity=0.241 Sum_probs=38.8
Q ss_pred CCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchh-HHhhCCcccccEEEEEeCCeEEEEEecCCCHHHHHHHHHHHHh
Q psy11159 55 TWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTD-LAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVE 133 (141)
Q Consensus 55 ~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~ 133 (141)
.+|++|++++=.+.+- +-...+..+|....++ +.+..-...+|++. .+|..+. +...+.++|++...
T Consensus 20 g~cpf~~rvrl~L~eK----gi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~--~~~~~i~------eS~~I~eYLde~~~ 87 (91)
T cd03061 20 GNCPFCQRLFMVLWLK----GVVFNVTTVDMKRKPEDLKDLAPGTQPPFLL--YNGEVKT------DNNKIEEFLEETLC 87 (91)
T ss_pred CCChhHHHHHHHHHHC----CCceEEEEeCCCCCCHHHHHhCCCCCCCEEE--ECCEEec------CHHHHHHHHHHHcc
Confidence 5799999877444433 1124456666655444 44444456789654 3554332 56677777776543
No 302
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=64.19 E-value=17 Score=20.36 Aligned_cols=33 Identities=21% Similarity=0.491 Sum_probs=21.1
Q ss_pred ccEEEEE-eCCeEEEEEe-cCCCHHHHHHHHHHHH
Q psy11159 100 VPVLIAM-KNGKELDRLI-GLQDIDKLKSFIDNLV 132 (141)
Q Consensus 100 ~Pt~~~~-~~g~~~~~~~-g~~~~~~l~~~i~~~~ 132 (141)
-|+++++ .+|+++.+.. ...+.+++.+++.+..
T Consensus 42 ~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 42 PPELVLLDEDGEEVERINIEKWKTDEIEEFLNEKG 76 (78)
T ss_dssp --EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHHT
T ss_pred CCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHhC
Confidence 4788888 5777665443 3348999999998754
No 303
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=63.82 E-value=27 Score=22.57 Aligned_cols=42 Identities=7% Similarity=0.126 Sum_probs=34.4
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHhcC-CEEEEEEeCC
Q psy11159 45 STPVIVDFFATWCNPCKTLTPRLEAVIDEMKG-KVVLAKVDID 86 (141)
Q Consensus 45 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~ 86 (141)
++-..+.++++.++.|.-+...+..+++.+.+ ++.+-.+++.
T Consensus 127 ~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~~~ 169 (171)
T PF07700_consen 127 DNELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVECM 169 (171)
T ss_dssp TTEEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred CCEEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 44578889999999999999999999999987 6666655543
No 304
>KOG4277|consensus
Probab=63.80 E-value=54 Score=23.79 Aligned_cols=96 Identities=15% Similarity=0.096 Sum_probs=50.9
Q ss_pred eeeEEeCh-hhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEE
Q psy11159 27 TSFKVQDM-NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIA 105 (141)
Q Consensus 27 ~~~~~~~~-~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 105 (141)
+.++..+. +.....+...+++.+|+|...-- |.++...+.....+.+.+.-.....-....-.....|.+.+
T Consensus 134 aiI~pi~enQ~~fehlq~Rhq~ffVf~Gtge~-------PL~d~fidAASe~~~~a~FfSaseeVaPe~~~~kempaV~V 206 (468)
T KOG4277|consen 134 AIIEPINENQIEFEHLQARHQPFFVFFGTGEG-------PLFDAFIDAASEKFSVARFFSASEEVAPEENDAKEMPAVAV 206 (468)
T ss_pred ceeeecChhHHHHHHHhhccCceEEEEeCCCC-------cHHHHHHHHhhhheeeeeeeccccccCCcccchhhccceEE
Confidence 34444443 22333355568899998886543 34444444333344444333222212223334566799999
Q ss_pred EeCCeEEEEEecCCCHHHHHHHHHHH
Q psy11159 106 MKNGKELDRLIGLQDIDKLKSFIDNL 131 (141)
Q Consensus 106 ~~~g~~~~~~~g~~~~~~l~~~i~~~ 131 (141)
|++...-. ....+.+++..||.+-
T Consensus 207 FKDetf~i--~de~dd~dLseWinRE 230 (468)
T KOG4277|consen 207 FKDETFEI--EDEGDDEDLSEWINRE 230 (468)
T ss_pred EccceeEE--EecCchhHHHHHHhHh
Confidence 98764322 2333677888888763
No 305
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=62.46 E-value=22 Score=18.89 Aligned_cols=58 Identities=16% Similarity=0.261 Sum_probs=31.0
Q ss_pred CCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeEEEEEecCCCHHHHHHHHHH
Q psy11159 55 TWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDN 130 (141)
Q Consensus 55 ~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 130 (141)
++|+.|.+.+-.+... ++.+-.++++... .-.-..+|++.. +|+.+. ....+.++|++
T Consensus 14 s~sp~~~~v~~~L~~~------~i~~~~~~~~~~~----~~p~g~vP~l~~--~g~~l~------es~~I~~yL~~ 71 (72)
T cd03054 14 SLSPECLKVETYLRMA------GIPYEVVFSSNPW----RSPTGKLPFLEL--NGEKIA------DSEKIIEYLKK 71 (72)
T ss_pred CCCHHHHHHHHHHHhC------CCceEEEecCCcc----cCCCcccCEEEE--CCEEEc------CHHHHHHHHhh
Confidence 5899999888666653 3333334433211 112346888654 454332 23555566543
No 306
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=62.33 E-value=15 Score=21.73 Aligned_cols=32 Identities=16% Similarity=0.278 Sum_probs=20.6
Q ss_pred EecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCch
Q psy11159 52 FFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT 89 (141)
Q Consensus 52 f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~ 89 (141)
|+-+.|..|++....|++- ++.+-.+|..+.+
T Consensus 1 Y~~~~C~t~rka~~~L~~~------gi~~~~~d~~k~p 32 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEEN------GIEYEFIDYKKEP 32 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHT------T--EEEEETTTS-
T ss_pred CcCCCCHHHHHHHHHHHHc------CCCeEeehhhhCC
Confidence 5678999999988777763 5677778876644
No 307
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=61.82 E-value=23 Score=18.92 Aligned_cols=69 Identities=13% Similarity=0.128 Sum_probs=38.3
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCC----CchhHHhhCCcccccEEEEEeCCeEEEEEecCCCHHHH
Q psy11159 49 IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDID----ELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKL 124 (141)
Q Consensus 49 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~----~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l 124 (141)
+..|+.+.|+.|++.+-.+....-. .....++.. ..+++.+......+|++. .+|..+. ....+
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~----~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~--~~g~~l~------es~aI 69 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVD----YELVPVDLTKGEHKSPEHLARNPFGQIPALE--DGDLKLF------ESRAI 69 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCC----cEEEEeCccccccCCHHHHhhCCCCCCCEEE--ECCEEEE------cHHHH
Confidence 3456667799998887666554322 344444432 234555555667789864 3554322 34455
Q ss_pred HHHHH
Q psy11159 125 KSFID 129 (141)
Q Consensus 125 ~~~i~ 129 (141)
.++|+
T Consensus 70 ~~yL~ 74 (76)
T cd03053 70 TRYLA 74 (76)
T ss_pred HHHHh
Confidence 55554
No 308
>PRK10853 putative reductase; Provisional
Probab=61.06 E-value=12 Score=22.71 Aligned_cols=33 Identities=18% Similarity=0.106 Sum_probs=23.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCC
Q psy11159 49 IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDE 87 (141)
Q Consensus 49 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~ 87 (141)
+..|+-+.|..|++....|++- ++.+-.+|.-+
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~------~i~~~~~d~~k 34 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ------GIDYRFHDYRV 34 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc------CCCcEEeehcc
Confidence 3567889999999988777653 45555666543
No 309
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=60.67 E-value=16 Score=22.56 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=18.1
Q ss_pred EEEEEecCCChhhhhhhHHHHHH
Q psy11159 48 VIVDFFATWCNPCKTLTPRLEAV 70 (141)
Q Consensus 48 ~lv~f~~~~C~~C~~~~~~l~~~ 70 (141)
.+..|+-+.|..|++....|++-
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~ 24 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKAS 24 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHC
Confidence 35568889999999988777664
No 310
>KOG3029|consensus
Probab=60.58 E-value=46 Score=23.88 Aligned_cols=73 Identities=15% Similarity=0.210 Sum_probs=42.4
Q ss_pred cEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeEEEEEecCCCHHHHHH
Q psy11159 47 PVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKS 126 (141)
Q Consensus 47 ~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~ 126 (141)
+-++.|--..||.|-+++..|+=..- .-.++.||.-.-.++... ....+|.+++ +|+. ..+..-|..
T Consensus 89 L~l~LyQyetCPFCcKVrAFLDyhgi----sY~VVEVnpV~r~eIk~S-sykKVPil~~--~Geq------m~dSsvIIs 155 (370)
T KOG3029|consen 89 LDLVLYQYETCPFCCKVRAFLDYHGI----SYAVVEVNPVLRQEIKWS-SYKKVPILLI--RGEQ------MVDSSVIIS 155 (370)
T ss_pred ceEEEEeeccCchHHHHHHHHhhcCC----ceEEEEecchhhhhcccc-ccccccEEEe--ccce------echhHHHHH
Confidence 45777888899999988766543211 234555554444444333 5678898666 3652 224445555
Q ss_pred HHHHHH
Q psy11159 127 FIDNLV 132 (141)
Q Consensus 127 ~i~~~~ 132 (141)
.|..++
T Consensus 156 ~laTyL 161 (370)
T KOG3029|consen 156 LLATYL 161 (370)
T ss_pred HHHHHh
Confidence 555554
No 311
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=60.40 E-value=19 Score=23.49 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=22.3
Q ss_pred EEecCCChhhhhhhHHHHHHHHHhc
Q psy11159 51 DFFATWCNPCKTLTPRLEAVIDEMK 75 (141)
Q Consensus 51 ~f~~~~C~~C~~~~~~l~~~~~~~~ 75 (141)
.|+..-||.|-...+.+.++.++++
T Consensus 3 ~~~D~~cP~cyl~~~~l~~~~~~~~ 27 (201)
T cd03024 3 IWSDVVCPWCYIGKRRLEKALAELG 27 (201)
T ss_pred EEecCcCccHHHHHHHHHHHHHhCC
Confidence 4777889999999999999999984
No 312
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=60.29 E-value=22 Score=24.42 Aligned_cols=32 Identities=25% Similarity=0.229 Sum_probs=25.2
Q ss_pred CcEEEEEecCCChhhhhhhHHHHHHHHHhcCC
Q psy11159 46 TPVIVDFFATWCNPCKTLTPRLEAVIDEMKGK 77 (141)
Q Consensus 46 ~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~ 77 (141)
+..+-.|...-||.|-.-.+.|+++...+++.
T Consensus 5 ~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~ 36 (225)
T COG2761 5 KIEIDVFSDVVCPWCYIGKRRLEKALAEYPQE 36 (225)
T ss_pred eEEEEEEeCCcCchhhcCHHHHHHHHHhcCcc
Confidence 33445555678999999999999999998854
No 313
>KOG3360|consensus
Probab=57.87 E-value=28 Score=20.45 Aligned_cols=46 Identities=20% Similarity=0.263 Sum_probs=33.8
Q ss_pred hHHhhCCcccccEEEEE-eCCeEEEEEecCCC-HHHHHHHHHHHHhcccCC
Q psy11159 90 DLAMDYEVSAVPVLIAM-KNGKELDRLIGLQD-IDKLKSFIDNLVEKQSAV 138 (141)
Q Consensus 90 ~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~~~-~~~l~~~i~~~~~~~~~~ 138 (141)
+-++++|+.+ ++-- .+|+...+..|+.. .+.++.||.....+.+++
T Consensus 29 ~~a~~lGlrG---Wv~Nt~~GtvkG~leGp~~~vd~mk~wl~~~gsP~s~I 76 (98)
T KOG3360|consen 29 DEAKKLGLRG---WVMNTSEGTVKGQLEGPPEKVDEMKEWLLTRGSPVSAI 76 (98)
T ss_pred HHHHhhcceE---EEEecCCceEEEEEeCCHHHHHHHHHHHHhcCChhHhe
Confidence 5678889998 4444 78899999999854 578889988665544443
No 314
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=57.65 E-value=15 Score=24.34 Aligned_cols=26 Identities=15% Similarity=0.460 Sum_probs=16.5
Q ss_pred EeChhhHHHHHhcCCCcEEEEEecCC
Q psy11159 31 VQDMNDFEKKVKNASTPVIVDFFATW 56 (141)
Q Consensus 31 ~~~~~~~~~~i~~~~~~~lv~f~~~~ 56 (141)
..+..++.+.+.+.++|+++.|.+.|
T Consensus 118 ~is~~~lr~~l~~~~~P~LllFGTGw 143 (185)
T PF09936_consen 118 TISYAELRRMLEEEDRPVLLLFGTGW 143 (185)
T ss_dssp -B-HHHHHHHHHH--S-EEEEE--TT
T ss_pred CcCHHHHHHHHhccCCeEEEEecCCC
Confidence 34788888888788999999999998
No 315
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=56.64 E-value=33 Score=20.83 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=22.8
Q ss_pred HHhhCCcccccEEEEEeCCeEEEEEecCCCHHHHHHHHH
Q psy11159 91 LAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129 (141)
Q Consensus 91 ~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~ 129 (141)
-+..|||+++|.++|- ++ .-..|..+...-...++
T Consensus 76 ~Aw~lGi~k~PAVV~D--~~--~VVYG~~DV~~A~~~~~ 110 (113)
T TIGR03757 76 DAWQLGVTKIPAVVVD--RR--YVVYGETDVARALALIQ 110 (113)
T ss_pred HHHHcCCccCCEEEEc--CC--eEEecCccHHHHHHHHH
Confidence 3568999999998773 33 44457766655444443
No 316
>PRK10387 glutaredoxin 2; Provisional
Probab=56.62 E-value=54 Score=21.49 Aligned_cols=69 Identities=16% Similarity=0.168 Sum_probs=35.0
Q ss_pred EEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeEEEEEecCCCHHHHHHHHHH
Q psy11159 51 DFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDN 130 (141)
Q Consensus 51 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 130 (141)
.|+.+.|++|.+.+=.+....-. .....++........+......+|+++. .+|..+. +...|..+|++
T Consensus 3 Ly~~~~sp~~~kv~~~L~~~gi~----y~~~~~~~~~~~~~~~~~p~~~VPvL~~-~~g~~l~------eS~aI~~yL~~ 71 (210)
T PRK10387 3 LYIYDHCPFCVKARMIFGLKNIP----VELIVLANDDEATPIRMIGQKQVPILQK-DDGSYMP------ESLDIVHYIDE 71 (210)
T ss_pred EEeCCCCchHHHHHHHHHHcCCC----eEEEEcCCCchhhHHHhcCCcccceEEe-cCCeEec------CHHHHHHHHHH
Confidence 45677899999887665554222 2333344333222222223456888744 3554332 33445555544
No 317
>PRK10026 arsenate reductase; Provisional
Probab=56.41 E-value=19 Score=22.74 Aligned_cols=22 Identities=9% Similarity=0.211 Sum_probs=18.0
Q ss_pred EEEEecCCChhhhhhhHHHHHH
Q psy11159 49 IVDFFATWCNPCKTLTPRLEAV 70 (141)
Q Consensus 49 lv~f~~~~C~~C~~~~~~l~~~ 70 (141)
+..|+-+.|..|++....|++-
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~ 25 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS 25 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 4568889999999998777664
No 318
>PRK00394 transcription factor; Reviewed
Probab=56.39 E-value=54 Score=21.59 Aligned_cols=31 Identities=13% Similarity=0.362 Sum_probs=23.9
Q ss_pred cEEEEEeCCeEEEEEecCCCHHHHHHHHHHHHh
Q psy11159 101 PVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVE 133 (141)
Q Consensus 101 Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~ 133 (141)
.++++|.+|+.+. +|..+.+++...+++..+
T Consensus 47 ~t~lIf~sGKiv~--tGa~S~~~a~~a~~~~~~ 77 (179)
T PRK00394 47 IAALIFRSGKVVC--TGAKSVEDLHEAVKIIIK 77 (179)
T ss_pred eEEEEEcCCcEEE--EccCCHHHHHHHHHHHHH
Confidence 5889999998664 477788888887777654
No 319
>KOG2868|consensus
Probab=55.93 E-value=27 Score=25.28 Aligned_cols=64 Identities=11% Similarity=0.215 Sum_probs=40.4
Q ss_pred hhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEe-CCeEEE--EEecCCCHHHHHHHHH
Q psy11159 61 KTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMK-NGKELD--RLIGLQDIDKLKSFID 129 (141)
Q Consensus 61 ~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~-~g~~~~--~~~g~~~~~~l~~~i~ 129 (141)
.+..|+++++..... .+.++..|...+. ..+.+|.| ||++|+ +-.... ......+.++|...|.
T Consensus 21 ~r~DP~ik~Ild~as-hva~Y~fd~~~~e--WnKtdiEG--tffvY~R~~~p~~gf~i~NR~~~~nf~e~lt 87 (335)
T KOG2868|consen 21 QRIDPYIKSILDVAS-HVALYTFDFGANE--WNKTDIEG--TFFVYKRDASPRHGFLIVNRLSPDNFVEPLT 87 (335)
T ss_pred hhhCHHHHHHHhhcc-ceeEEEeccccch--hhhcccee--EEEEEEccCCCccceEeecCCChhhhhhhcC
Confidence 445678888888776 8999999998875 55667777 677774 333222 2223345555544443
No 320
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=55.88 E-value=30 Score=18.41 Aligned_cols=68 Identities=19% Similarity=0.095 Sum_probs=36.7
Q ss_pred EEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCC-chhHHhhCCc-ccccEEEEEeCCeEEEEEecCCCHHHHHHHH
Q psy11159 51 DFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDE-LTDLAMDYEV-SAVPVLIAMKNGKELDRLIGLQDIDKLKSFI 128 (141)
Q Consensus 51 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~v-~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i 128 (141)
.|+.+.|+.|++.+=.+....-. .....++... .+++.+.... ..+|++.. +|..+. ....+.++|
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~gl~----~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~--~~~~l~------eS~aI~~yL 70 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKGVP----YEYVEEDLGNKSELLLASNPVHKKIPVLLH--NGKPIC------ESLIIVEYI 70 (74)
T ss_pred EEECCCCchHHHHHHHHHHcCCC----CEEEEeCcccCCHHHHHhCCCCCCCCEEEE--CCEEee------hHHHHHHHH
Confidence 46677899999887666554322 3333444432 2333333232 57898753 553322 345566665
Q ss_pred HH
Q psy11159 129 DN 130 (141)
Q Consensus 129 ~~ 130 (141)
++
T Consensus 71 ~~ 72 (74)
T cd03058 71 DE 72 (74)
T ss_pred Hh
Confidence 54
No 321
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=55.84 E-value=30 Score=18.34 Aligned_cols=58 Identities=12% Similarity=0.063 Sum_probs=32.1
Q ss_pred EEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCC-chhHHhhCCcccccEEEEEeCCeE
Q psy11159 51 DFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDE-LTDLAMDYEVSAVPVLIAMKNGKE 111 (141)
Q Consensus 51 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~v~~~Pt~~~~~~g~~ 111 (141)
.|+.+.|+.|.+.+-.+....... .+..+.+|... .+++.+......+|++.. .+|..
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~~~i--~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~~g~~ 61 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETGLGD--DVELVLVNPWSDDESLLAVNPLGKIPALVL-DDGEA 61 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhCCCC--CcEEEEcCcccCChHHHHhCCCCCCCEEEE-CCCCE
Confidence 467888999997775554411111 24445555322 344555445667897653 35543
No 322
>PF11317 DUF3119: Protein of unknown function (DUF3119); InterPro: IPR021467 This family of proteins has no known function.
Probab=55.41 E-value=30 Score=21.06 Aligned_cols=35 Identities=17% Similarity=0.292 Sum_probs=28.4
Q ss_pred ccccEEEEEeCCeEEEEEecCCCHHHHHHHHHHHH
Q psy11159 98 SAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLV 132 (141)
Q Consensus 98 ~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 132 (141)
.++|.+++|++.+.++...--.+..++++-+++.+
T Consensus 81 p~~PiL~YFkE~qsiHFlPiiFd~~~L~~~l~~r~ 115 (116)
T PF11317_consen 81 PGFPILFYFKETQSIHFLPIIFDPKQLREQLEERC 115 (116)
T ss_pred CCCCEEEEEecCCcceeeeeecCHHHHHHHHHHhC
Confidence 37899999998888887777778888888887653
No 323
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=55.10 E-value=59 Score=22.32 Aligned_cols=50 Identities=24% Similarity=0.325 Sum_probs=35.8
Q ss_pred ChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeEEEE
Q psy11159 57 CNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDR 114 (141)
Q Consensus 57 C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 114 (141)
=.+|..++..+++++++++..+.++--|+.-. ..|.- .++-+++|+.+.+
T Consensus 168 mkHsv~iMk~Lrrla~el~KtiviVlHDINfA----S~YsD----~IVAlK~G~vv~~ 217 (252)
T COG4604 168 MKHSVQIMKILRRLADELGKTIVVVLHDINFA----SCYSD----HIVALKNGKVVKQ 217 (252)
T ss_pred hHHHHHHHHHHHHHHHHhCCeEEEEEecccHH----Hhhhh----heeeecCCEEEec
Confidence 47899999999999999986677666665543 22222 3677788887654
No 324
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=54.75 E-value=45 Score=21.97 Aligned_cols=32 Identities=16% Similarity=0.403 Sum_probs=25.0
Q ss_pred cEEEEEeCCeEEEEEecCCCHHHHHHHHHHHHhc
Q psy11159 101 PVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEK 134 (141)
Q Consensus 101 Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~ 134 (141)
+++++|+.|+.+. +|..+.++++..++...+.
T Consensus 54 ~a~LIF~SGK~Vc--TGaKs~ed~~~av~~~~~~ 85 (185)
T COG2101 54 TAALIFRSGKVVC--TGAKSVEDVHRAVKKLAKK 85 (185)
T ss_pred ceEEEEecCcEEE--eccCcHHHHHHHHHHHHHH
Confidence 4788999998665 5888888888888877653
No 325
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=54.47 E-value=41 Score=22.67 Aligned_cols=26 Identities=23% Similarity=0.502 Sum_probs=20.2
Q ss_pred CCchhHHhhCCcccccEEEEEeCCeEE
Q psy11159 86 DELTDLAMDYEVSAVPVLIAMKNGKEL 112 (141)
Q Consensus 86 ~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 112 (141)
|.+..+.++|+|..+|.++. .+|+..
T Consensus 172 dQ~g~Lt~rF~I~~VPavV~-q~g~~l 197 (202)
T TIGR02743 172 DQHGKLTQKFGIKHVPARVS-QEGLRL 197 (202)
T ss_pred cCCchHhhccCceeeceEEE-ecCCEE
Confidence 55678999999999999665 566543
No 326
>KOG1731|consensus
Probab=53.99 E-value=19 Score=28.18 Aligned_cols=61 Identities=13% Similarity=0.090 Sum_probs=40.1
Q ss_pred EEEEEEeCCCchhHHhhCCcccccEEEEEeCCeEEEEEecCCCHHHHHHHHHHHHhcccCCC
Q psy11159 78 VVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEKQSAVN 139 (141)
Q Consensus 78 ~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~~ 139 (141)
+.+..+-..++..+.+ +++...|+.+++++|+...-.....+.+.+.+.|.+++......+
T Consensus 216 v~vr~~~d~q~~~~~~-l~~~~~~~~llfrnG~~q~l~~~~~s~~~y~~~I~~~lg~~~~a~ 276 (606)
T KOG1731|consen 216 VGVRARLDTQNFPLFG-LKPDNFPLALLFRNGEQQPLWPSSSSRSAYVKKIDDLLGDKNEAS 276 (606)
T ss_pred cceEEEecchhccccc-cCCCCchhhhhhcCCcccccccccccHHHHHHHHHHHhcCccccC
Confidence 3333333333334444 889999999999999866555555577788888888876554443
No 327
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=53.56 E-value=42 Score=19.37 Aligned_cols=44 Identities=11% Similarity=0.108 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCCEEEEEEeCCCchhHHhhC--------CcccccEEEEEeCCeEEE
Q psy11159 66 RLEAVIDEMKGKVVLAKVDIDELTDLAMDY--------EVSAVPVLIAMKNGKELD 113 (141)
Q Consensus 66 ~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~~~g~~~~ 113 (141)
.+..+.+.. ++.|-.+|++.+++..+.+ +-..+|.+++ +|+.++
T Consensus 21 ~v~~lL~~k--~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi--~~~~iG 72 (92)
T cd03030 21 EVLGFLEAK--KIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFN--GDEYCG 72 (92)
T ss_pred HHHHHHHHC--CCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEE--CCEEee
Confidence 334444443 5889999998776543322 2356677654 665554
No 328
>COG4752 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.14 E-value=23 Score=22.70 Aligned_cols=28 Identities=11% Similarity=0.256 Sum_probs=23.1
Q ss_pred EeChhhHHHHHhcCCCcEEEEEecCCCh
Q psy11159 31 VQDMNDFEKKVKNASTPVIVDFFATWCN 58 (141)
Q Consensus 31 ~~~~~~~~~~i~~~~~~~lv~f~~~~C~ 58 (141)
..+.+.....+.+.+||+++.|..-|--
T Consensus 119 ~isy~~lr~~I~e~dkp~LilfGTGwGl 146 (190)
T COG4752 119 TISYSWLRNEIQERDKPWLILFGTGWGL 146 (190)
T ss_pred cccHHHHHHHHhhcCCcEEEEecCCCCC
Confidence 3467788888888899999999999953
No 329
>PLN00062 TATA-box-binding protein; Provisional
Probab=51.49 E-value=68 Score=21.15 Aligned_cols=60 Identities=12% Similarity=0.143 Sum_probs=33.6
Q ss_pred HHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeEEEEEecCCCHHHHHHHHHHHHh
Q psy11159 67 LEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVE 133 (141)
Q Consensus 67 l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~ 133 (141)
|++++...++ +..+.+..+.+.-++.-. -.++++|.+|+.+. +|..+.+++...+++..+
T Consensus 19 L~~la~~~~n----~eYePe~fpgli~Rl~~P-k~t~lIF~SGKivi--TGaks~e~a~~a~~~~~~ 78 (179)
T PLN00062 19 LKKIALQARN----AEYNPKRFAAVIMRIREP-KTTALIFASGKMVC--TGAKSEHDSKLAARKYAR 78 (179)
T ss_pred HHHHHhhCCC----CEECCccCcEEEEEeCCC-cEEEEEECCCeEEE--EecCCHHHHHHHHHHHHH
Confidence 4555544432 344444444433332211 23789999998665 477677777766666543
No 330
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=51.17 E-value=50 Score=19.57 Aligned_cols=21 Identities=19% Similarity=0.615 Sum_probs=15.6
Q ss_pred EEEEecCCChhhhhh-hHHHHH
Q psy11159 49 IVDFFATWCNPCKTL-TPRLEA 69 (141)
Q Consensus 49 lv~f~~~~C~~C~~~-~~~l~~ 69 (141)
|-.||-+-||.|+++ ...|..
T Consensus 3 v~vyyESlCPd~~~fi~~~L~p 24 (108)
T PF03227_consen 3 VEVYYESLCPDCRRFITNQLFP 24 (108)
T ss_pred EEEEEEecCHhHHHHHHHHHHH
Confidence 567999999999987 333443
No 331
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=50.71 E-value=72 Score=21.18 Aligned_cols=54 Identities=13% Similarity=0.111 Sum_probs=27.3
Q ss_pred EecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCe
Q psy11159 52 FFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGK 110 (141)
Q Consensus 52 f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 110 (141)
|+...||+|++.+=.+....-.+ ..+.++.+......+......+|++.. .+|.
T Consensus 3 y~~~~sp~~~kvr~~L~~~gl~~----e~~~~~~~~~~~~~~~np~g~vP~l~~-~~g~ 56 (209)
T TIGR02182 3 YIYDHCPFCVRARMIFGLKNIPV----EKHVLLNDDEETPIRMIGAKQVPILQK-DDGR 56 (209)
T ss_pred ecCCCCChHHHHHHHHHHcCCCe----EEEECCCCcchhHHHhcCCCCcceEEe-eCCe
Confidence 56778999987775555442222 222233322222222223467897643 3554
No 332
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=49.19 E-value=56 Score=22.86 Aligned_cols=79 Identities=15% Similarity=0.124 Sum_probs=45.6
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCch---hHHhhCCcccccEEEEEeCCeEEEEEecCCCHHHH
Q psy11159 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT---DLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKL 124 (141)
Q Consensus 48 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l 124 (141)
-++.+.+.-|+-+..++..+.+++.+ .+.++.++.+.-. ++...+.-.....++++++ ...-.+..+...|
T Consensus 54 nvLL~G~rGtGKSSlVkall~~y~~~---GLRlIev~k~~L~~l~~l~~~l~~~~~kFIlf~DD---LsFe~~d~~yk~L 127 (249)
T PF05673_consen 54 NVLLWGARGTGKSSLVKALLNEYADQ---GLRLIEVSKEDLGDLPELLDLLRDRPYKFILFCDD---LSFEEGDTEYKAL 127 (249)
T ss_pred ceEEecCCCCCHHHHHHHHHHHHhhc---CceEEEECHHHhccHHHHHHHHhcCCCCEEEEecC---CCCCCCcHHHHHH
Confidence 36668888999998888777777666 5888888766544 4444433333334444443 2222233344455
Q ss_pred HHHHHHHH
Q psy11159 125 KSFIDNLV 132 (141)
Q Consensus 125 ~~~i~~~~ 132 (141)
+..|+--+
T Consensus 128 Ks~LeGgl 135 (249)
T PF05673_consen 128 KSVLEGGL 135 (249)
T ss_pred HHHhcCcc
Confidence 55554433
No 333
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=48.27 E-value=61 Score=21.54 Aligned_cols=36 Identities=8% Similarity=-0.081 Sum_probs=26.0
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEE
Q psy11159 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKV 83 (141)
Q Consensus 48 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v 83 (141)
.+-.|+..-||.|-.-...+.++.+.++-.+.+.-+
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~ 37 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPV 37 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEee
Confidence 344677788999999999999988776534444444
No 334
>KOG0868|consensus
Probab=48.10 E-value=8.1 Score=25.57 Aligned_cols=65 Identities=20% Similarity=0.315 Sum_probs=34.1
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeEE
Q psy11159 45 STPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKEL 112 (141)
Q Consensus 45 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 112 (141)
.||++.-+|.+.|..=.+..=.++.+.=++. -+...+-.-..+.++.+---...+|++++ +|..+
T Consensus 4 ~KpiLYSYWrSSCswRVRiALaLK~iDYey~-PvnLlk~~~q~~~ef~~iNPm~kVP~L~i--~g~tl 68 (217)
T KOG0868|consen 4 AKPILYSYWRSSCSWRVRIALALKGIDYEYK-PVNLLKEEDQSDSEFKEINPMEKVPTLVI--DGLTL 68 (217)
T ss_pred ccchhhhhhcccchHHHHHHHHHcCCCccee-ehhhhcchhhhhhHHhhcCchhhCCeEEE--CCEEe
Confidence 5888888888888877666544444422222 12222111111123333333567899777 66544
No 335
>KOG4079|consensus
Probab=48.09 E-value=34 Score=21.53 Aligned_cols=29 Identities=10% Similarity=0.217 Sum_probs=20.7
Q ss_pred EeCCeEEEEEecCCCHHHHHHHHHHHHhc
Q psy11159 106 MKNGKELDRLIGLQDIDKLKSFIDNLVEK 134 (141)
Q Consensus 106 ~~~g~~~~~~~g~~~~~~l~~~i~~~~~~ 134 (141)
+.+|+.+-..-...+.++|++.|.+.+.+
T Consensus 81 lddGr~vL~Dld~~~r~eI~~hl~K~lGK 109 (169)
T KOG4079|consen 81 LDDGREVLFDLDGMKREEIEKHLAKTLGK 109 (169)
T ss_pred ecCcceEEEEcccccHHHHHHHHHHHhCc
Confidence 37787666554455889999999887753
No 336
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=47.63 E-value=1.1e+02 Score=22.63 Aligned_cols=100 Identities=6% Similarity=0.022 Sum_probs=59.3
Q ss_pred eeeEEeChhhHHHHHhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEE
Q psy11159 27 TSFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAM 106 (141)
Q Consensus 27 ~~~~~~~~~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 106 (141)
++..+.+..+....-.-.+.+.||-|+.+--+. -...+.+.+..|...+.|+.+= ++.++++++.. .-.+-++
T Consensus 147 PVeiIn~~~e~~~Fe~ied~~klIGyFk~~~s~---~yk~FeeAAe~F~p~IkFfAtf---d~~vAk~L~lK-~nev~fy 219 (383)
T PF01216_consen 147 PVEIINNKHELKAFERIEDDIKLIGYFKSEDSE---HYKEFEEAAEHFQPYIKFFATF---DKKVAKKLGLK-LNEVDFY 219 (383)
T ss_dssp SEEEE-SHHHHHHHHH--SS-EEEEE-SSTTSH---HHHHHHHHHHHCTTTSEEEEE----SHHHHHHHT-S-TT-EEEE
T ss_pred chhhhcChhhhhhhhhcccceeEEEEeCCCCcH---HHHHHHHHHHhhcCceeEEEEe---cchhhhhcCcc-ccceeee
Confidence 344566666666554334568888888775332 2336678888987778877553 56788888876 5566666
Q ss_pred e--CCeEEEEEecCCCHHHHHHHHHHHHh
Q psy11159 107 K--NGKELDRLIGLQDIDKLKSFIDNLVE 133 (141)
Q Consensus 107 ~--~g~~~~~~~g~~~~~~l~~~i~~~~~ 133 (141)
. -.+.+..-..+.+.+++.+||+++-+
T Consensus 220 epF~~~pi~ip~~p~~e~e~~~fi~~h~r 248 (383)
T PF01216_consen 220 EPFMDEPITIPGKPYTEEELVEFIEEHKR 248 (383)
T ss_dssp -TTSSSEEEESSSS--HHHHHHHHHHT-S
T ss_pred ccccCCCccCCCCCCCHHHHHHHHHHhch
Confidence 2 23455544456688899999998754
No 337
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=45.79 E-value=1e+02 Score=21.55 Aligned_cols=40 Identities=15% Similarity=0.122 Sum_probs=29.0
Q ss_pred hHHhhCCcccc--cEEEEE-eCCeEEEEEecCCCHHHHHHHHH
Q psy11159 90 DLAMDYEVSAV--PVLIAM-KNGKELDRLIGLQDIDKLKSFID 129 (141)
Q Consensus 90 ~~~~~~~v~~~--Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~ 129 (141)
++.+.+++... ..++++ .+|++.+.-.|..+.+++..+.+
T Consensus 205 ~iRe~Lgi~N~~~GYvyLVD~~grIRWagsG~At~~E~~~L~k 247 (252)
T PF05176_consen 205 DIREALGINNSYVGYVYLVDPNGRIRWAGSGPATPEELESLWK 247 (252)
T ss_pred HHHHHhCCCCCCcCeEEEECCCCeEEeCccCCCCHHHHHHHHH
Confidence 45566666543 445555 78999999999999998887665
No 338
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=44.29 E-value=71 Score=19.30 Aligned_cols=89 Identities=11% Similarity=0.171 Sum_probs=48.9
Q ss_pred CCCcEEEEEecCCCh-hhhhhhHHHHHHHHHh----c--C--C--EEEEEEeCCCchhHHhhCCcc-cccEEEEE--eCC
Q psy11159 44 ASTPVIVDFFATWCN-PCKTLTPRLEAVIDEM----K--G--K--VVLAKVDIDELTDLAMDYEVS-AVPVLIAM--KNG 109 (141)
Q Consensus 44 ~~~~~lv~f~~~~C~-~C~~~~~~l~~~~~~~----~--~--~--~~~~~vd~~~~~~~~~~~~v~-~~Pt~~~~--~~g 109 (141)
+..|.+|+|...--. .-...++.++.++++. + + . +-|+..+-+-...+..-.+.. ..|.++++ .+.
T Consensus 13 n~~p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede~tdsLRDf~nL~d~~P~LviLDip~r 92 (116)
T cd03071 13 NEGPCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDDMTDSLRDYTNLPEAAPLLTILDMSAR 92 (116)
T ss_pred cCCceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccchHHHHHHHhcCCCccCceEEEEecccc
Confidence 466788888854433 5566666665555433 2 1 1 333333433343444444544 35877777 232
Q ss_pred eEEEEEecCCCHHHHHHHHHHHH
Q psy11159 110 KELDRLIGLQDIDKLKSFIDNLV 132 (141)
Q Consensus 110 ~~~~~~~g~~~~~~l~~~i~~~~ 132 (141)
+....-...++.+.+.+|+.+++
T Consensus 93 ~~~v~~~eeIT~e~~~~fv~~yl 115 (116)
T cd03071 93 AKYVMDVEEITPAIVEAFVSDFL 115 (116)
T ss_pred ceEeCchHhcCHHHHHHHHHHhh
Confidence 22222224578899999998875
No 339
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=42.65 E-value=45 Score=22.50 Aligned_cols=28 Identities=25% Similarity=0.390 Sum_probs=25.0
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhc
Q psy11159 48 VIVDFFATWCNPCKTLTPRLEAVIDEMK 75 (141)
Q Consensus 48 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~ 75 (141)
.|.+.+.|-|+-|--+.|.++++....+
T Consensus 3 ~lhYifDPmCgWCyGa~Pll~~l~~~~g 30 (212)
T COG3531 3 TLHYIFDPMCGWCYGAAPLLEALSAQPG 30 (212)
T ss_pred eeEEecCcchhhhhCccHHHHHHHhcCC
Confidence 5788999999999999999999988753
No 340
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=41.40 E-value=94 Score=20.38 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=23.0
Q ss_pred EEEEEeCCeEEEEEecCCCHHHHHHHHHHHHh
Q psy11159 102 VLIAMKNGKELDRLIGLQDIDKLKSFIDNLVE 133 (141)
Q Consensus 102 t~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~ 133 (141)
++++|.+|+.+. +|..+.++++..++...+
T Consensus 140 ~~lIF~SGKvvi--tGaks~~~~~~a~~~i~~ 169 (174)
T cd04518 140 VLLLFSSGKMVI--TGAKSEEDAKRAVEKLLS 169 (174)
T ss_pred EEEEeCCCEEEE--EecCCHHHHHHHHHHHHH
Confidence 678888887654 577788888888877654
No 341
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=40.89 E-value=88 Score=21.26 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=20.3
Q ss_pred CCchhHHhhCCcccccEEEE-EeCCeEE
Q psy11159 86 DELTDLAMDYEVSAVPVLIA-MKNGKEL 112 (141)
Q Consensus 86 ~~~~~~~~~~~v~~~Pt~~~-~~~g~~~ 112 (141)
|++..+.++|+|..+|.++. ..+|+..
T Consensus 170 dQ~G~Lt~rF~I~~VPAvV~~~q~G~~l 197 (209)
T PRK13738 170 DQNGVLCQRFGIDQVPARVSAVPGGRFL 197 (209)
T ss_pred cCcchHHHhcCCeeeceEEEEcCCCCEE
Confidence 55667999999999999665 1667644
No 342
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=40.67 E-value=90 Score=19.46 Aligned_cols=28 Identities=18% Similarity=0.549 Sum_probs=17.8
Q ss_pred EEEec--CCChhhhhhhHHHHHHHHHhcCCEEEE
Q psy11159 50 VDFFA--TWCNPCKTLTPRLEAVIDEMKGKVVLA 81 (141)
Q Consensus 50 v~f~~--~~C~~C~~~~~~l~~~~~~~~~~~~~~ 81 (141)
|..|+ +-|..|. +.++++..+|+ ++.+.
T Consensus 99 i~l~te~~pC~SC~---~vi~qF~~~~p-ni~~~ 128 (133)
T PF14424_consen 99 IDLFTELPPCESCS---NVIEQFKKDFP-NIKVN 128 (133)
T ss_pred EEEEecCCcChhHH---HHHHHHHHHCC-CcEEE
Confidence 44444 4466666 57788888998 45543
No 343
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=40.47 E-value=26 Score=19.17 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=17.1
Q ss_pred EEEEEeCCeEEEEE---ecCCCHHHHHHHH
Q psy11159 102 VLIAMKNGKELDRL---IGLQDIDKLKSFI 128 (141)
Q Consensus 102 t~~~~~~g~~~~~~---~g~~~~~~l~~~i 128 (141)
.|-+.-+|+.++.. .|..+.+++.+.|
T Consensus 42 ~Fev~~~g~~v~sk~~~~~fp~~~~~~~~i 71 (72)
T TIGR02174 42 AFEVTVNGQLVWSKLRGGGFPEPEELKQLI 71 (72)
T ss_pred EEEEEECCEEEEEeccCCCCCCHHHHHHhh
Confidence 34455588777644 3567777777665
No 344
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=39.24 E-value=68 Score=17.58 Aligned_cols=68 Identities=10% Similarity=0.156 Sum_probs=38.7
Q ss_pred EEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeEEEEEe---cCCCHHHHHHH
Q psy11159 51 DFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLI---GLQDIDKLKSF 127 (141)
Q Consensus 51 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~---g~~~~~~l~~~ 127 (141)
.-|=..|++-..+...-+++...+++.+.-+.... ...-+|-+.-+|+.++... +..+.+++.+.
T Consensus 5 IeYC~~C~~~~~a~~l~~~l~~~fp~~~~~v~~~~------------~~~G~FEV~v~g~lI~SK~~~g~fP~~~~i~~~ 72 (76)
T PF10262_consen 5 IEYCTSCGYRPRALELAQELLQTFPDRIAEVELSP------------GSTGAFEVTVNGELIFSKLESGRFPDPDEIVQL 72 (76)
T ss_dssp EEEETTTTCHHHHHHHHHHHHHHSTTTCSEEEEEE------------ESTT-EEEEETTEEEEEHHHHTSSS-HHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCcceEEEEEe------------ccCCEEEEEEccEEEEEehhcCCCCCHHHHHHH
Confidence 34444455555556566777788886432222211 1122577777888887443 56788888888
Q ss_pred HHH
Q psy11159 128 IDN 130 (141)
Q Consensus 128 i~~ 130 (141)
|++
T Consensus 73 I~~ 75 (76)
T PF10262_consen 73 IRD 75 (76)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
No 345
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=38.99 E-value=1.1e+02 Score=20.09 Aligned_cols=60 Identities=12% Similarity=0.149 Sum_probs=34.3
Q ss_pred HHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeEEEEEecCCCHHHHHHHHHHHHh
Q psy11159 67 LEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVE 133 (141)
Q Consensus 67 l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~ 133 (141)
|.+++..+++ +..+.++.+.+.-++.- --.++++|.+|+.+. +|..+.+++...+++..+
T Consensus 19 L~~la~~~~n----~~YePe~fpgli~R~~~-P~~t~lIf~sGKivi--tGaks~~~~~~a~~~~~~ 78 (174)
T cd00652 19 LRKIALAARN----AEYNPKRFPGVIMRLRE-PKTTALIFSSGKMVI--TGAKSEEDAKLAARKYAR 78 (174)
T ss_pred HHHHHhhCCC----cEECCCccceEEEEcCC-CcEEEEEECCCEEEE--EecCCHHHHHHHHHHHHH
Confidence 4566555442 34444444433322221 124889999998665 476677777777666643
No 346
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=38.60 E-value=1.1e+02 Score=19.98 Aligned_cols=31 Identities=13% Similarity=0.049 Sum_probs=22.7
Q ss_pred cEEEEEeCCeEEEEEecCCCHHHHHHHHHHHHh
Q psy11159 101 PVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVE 133 (141)
Q Consensus 101 Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~ 133 (141)
.++++|.+|+.+. +|..+.++++..+++..+
T Consensus 48 ~t~lIF~sGKivi--TGaks~~~~~~a~~~~~~ 78 (174)
T cd04517 48 ATASVWSSGKITI--TGATSEEEAKQAARRAAR 78 (174)
T ss_pred EEEEEECCCeEEE--EccCCHHHHHHHHHHHHH
Confidence 3788899998664 477788877777766644
No 347
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=38.18 E-value=96 Score=19.04 Aligned_cols=53 Identities=23% Similarity=0.457 Sum_probs=33.4
Q ss_pred CCChhhhhhhHHHHHHHHH----hcC---CEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeEE
Q psy11159 55 TWCNPCKTLTPRLEAVIDE----MKG---KVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKEL 112 (141)
Q Consensus 55 ~~C~~C~~~~~~l~~~~~~----~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 112 (141)
..|..|...-..+.++.++ +.. .+.+-++..+.. ++...+ .+-|++.+ +|+.+
T Consensus 13 ~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~-~~~~~~--~~S~~I~i--nG~pi 72 (120)
T PF10865_consen 13 KTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEE-EFARQP--LESPTIRI--NGRPI 72 (120)
T ss_pred CcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChH-HHhhcc--cCCCeeeE--CCEeh
Confidence 3799998776666555444 321 366667766664 666666 55677666 66655
No 348
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity. The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.
Probab=37.62 E-value=84 Score=18.22 Aligned_cols=35 Identities=14% Similarity=0.179 Sum_probs=25.2
Q ss_pred Ccccc-cEEEEEe--CCeEEEEEecCCCHHHHHHHHHHHHhc
Q psy11159 96 EVSAV-PVLIAMK--NGKELDRLIGLQDIDKLKSFIDNLVEK 134 (141)
Q Consensus 96 ~v~~~-Pt~~~~~--~g~~~~~~~g~~~~~~l~~~i~~~~~~ 134 (141)
|-... |++++++ +|. ..|..+++++...|++++..
T Consensus 48 G~c~~gp~vvvyP~~~g~----wy~~v~p~~v~~Iv~~hl~~ 85 (97)
T cd03062 48 GGHKFAGNVIIYPKGDGI----WYGRVTPEHVPPIVDRLILG 85 (97)
T ss_pred CccCcCCEEEEEeCCCee----EEeecCHHHHHHHHHHHhcC
Confidence 43443 8999998 652 33456899999999888765
No 349
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=37.43 E-value=92 Score=18.59 Aligned_cols=54 Identities=20% Similarity=0.191 Sum_probs=33.7
Q ss_pred CCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCC-cccccEE-EEEeCCeEEE
Q psy11159 55 TWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYE-VSAVPVL-IAMKNGKELD 113 (141)
Q Consensus 55 ~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~-v~~~Pt~-~~~~~g~~~~ 113 (141)
|-|+.+.+....|... + -+.|..+|+-+++++.+.+. ...+||+ -+|-+|+.+.
T Consensus 28 P~CGFS~~~vqiL~~~----g-~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfvG 83 (105)
T COG0278 28 PQCGFSAQAVQILSAC----G-VVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFVG 83 (105)
T ss_pred CCCCccHHHHHHHHHc----C-CcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEec
Confidence 5677777666555543 2 17889999999998877553 2334543 1223776554
No 350
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=37.37 E-value=1.2e+02 Score=19.91 Aligned_cols=60 Identities=13% Similarity=0.161 Sum_probs=32.7
Q ss_pred HHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeEEEEEecCCCHHHHHHHHHHHHh
Q psy11159 67 LEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVE 133 (141)
Q Consensus 67 l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~ 133 (141)
|++++..+++ ...+.++.+.+.-++.- --.++++|.+|+.+. +|..+.++....+++..+
T Consensus 19 L~~la~~~~n----~eYePe~fpgli~Rl~~-Pk~t~lIF~SGKivi--TGaks~e~a~~a~~~i~~ 78 (174)
T cd04516 19 LKKIALRARN----AEYNPKRFAAVIMRIRE-PKTTALIFSSGKMVC--TGAKSEDDSKLAARKYAR 78 (174)
T ss_pred HHHHHhhCCC----CEECCccCcEEEEEeCC-CcEEEEEECCCeEEE--EecCCHHHHHHHHHHHHH
Confidence 4555554432 34444444433322211 112788899998665 476777777766665543
No 351
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=36.16 E-value=88 Score=21.09 Aligned_cols=38 Identities=21% Similarity=0.254 Sum_probs=26.4
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCC
Q psy11159 45 STPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDID 86 (141)
Q Consensus 45 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~ 86 (141)
..-.+..|..+.|+.|......+.. . ...+.++-|+..
T Consensus 108 ~~~rlalFvkd~C~~C~~~~~~l~a---~-~~~~Diylvgs~ 145 (200)
T TIGR03759 108 GGGRLALFVKDDCVACDARVQRLLA---D-NAPLDLYLVGSQ 145 (200)
T ss_pred CCCeEEEEeCCCChHHHHHHHHHhc---C-CCceeEEEecCC
Confidence 3446777888999999987766532 2 125888888843
No 352
>KOG0852|consensus
Probab=35.01 E-value=1.4e+02 Score=19.92 Aligned_cols=47 Identities=15% Similarity=0.253 Sum_probs=26.7
Q ss_pred CCchhHHhhCCcc----ccc---EEEEEeCCeEEE-EEec---CCCHHHHHHHHHHHH
Q psy11159 86 DELTDLAMDYEVS----AVP---VLIAMKNGKELD-RLIG---LQDIDKLKSFIDNLV 132 (141)
Q Consensus 86 ~~~~~~~~~~~v~----~~P---t~~~~~~g~~~~-~~~g---~~~~~~l~~~i~~~~ 132 (141)
|.+.++++.||+. |++ .+++.++|.... .... -.+.++..+.++...
T Consensus 104 D~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRLvqAfQ 161 (196)
T KOG0852|consen 104 DLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDETLRLVQAFQ 161 (196)
T ss_pred ccchhhHHhcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHHHHHHHHHh
Confidence 4466899999875 455 333335553322 1111 136777777777653
No 353
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=34.94 E-value=15 Score=23.09 Aligned_cols=13 Identities=31% Similarity=0.754 Sum_probs=11.1
Q ss_pred CChhhhhhhHHHH
Q psy11159 56 WCNPCKTLTPRLE 68 (141)
Q Consensus 56 ~C~~C~~~~~~l~ 68 (141)
.||+|+...|.|.
T Consensus 11 ~CPhCRQ~ipALt 23 (163)
T TIGR02652 11 RCPHCRQNIPALT 23 (163)
T ss_pred cCchhhcccchhe
Confidence 6999999998773
No 354
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=34.94 E-value=15 Score=23.11 Aligned_cols=13 Identities=31% Similarity=0.769 Sum_probs=11.1
Q ss_pred CChhhhhhhHHHH
Q psy11159 56 WCNPCKTLTPRLE 68 (141)
Q Consensus 56 ~C~~C~~~~~~l~ 68 (141)
.||+|+...|.|.
T Consensus 8 ~CPhCRq~ipALt 20 (161)
T PF09654_consen 8 QCPHCRQTIPALT 20 (161)
T ss_pred cCchhhcccchhe
Confidence 6999999998773
No 355
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=31.64 E-value=87 Score=16.57 Aligned_cols=66 Identities=11% Similarity=0.176 Sum_probs=35.0
Q ss_pred CChhhhhhhHHHHHHHHHhcCCEEEEEE---eCCCchhHHhhCCcccccEEEEEeCCeEEEEEecCCCHHHHHHHHHH
Q psy11159 56 WCNPCKTLTPRLEAVIDEMKGKVVLAKV---DIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDN 130 (141)
Q Consensus 56 ~C~~C~~~~~~l~~~~~~~~~~~~~~~v---d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 130 (141)
.||.|++..=.+....-.+ .+.++.. +....+.+.+.-.-..+|++.. .+|+.+. +-..|.++|++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~--~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~-~~g~vi~------eS~~I~~yL~~ 69 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPY--EIKVVPLIPKGEQKPPEFLALNPRGKVPVLVD-PDGTVIN------ESLAILEYLEE 69 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTC--EEEEEETTTTBCTTCHBHHHHSTT-SSSEEEE-TTTEEEE------SHHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCC--EEEEEeeecCccccChhhhccCcCeEEEEEEE-CCCCEee------CHHHHHHHHhc
Confidence 5889988876665553333 2443311 1122245666556677899665 5776333 44556666554
No 356
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=29.58 E-value=1.3e+02 Score=17.78 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=20.3
Q ss_pred EEecCCChhhhhhhHHHHHHHHHhc-CCEEEEEEeCCCchh
Q psy11159 51 DFFATWCNPCKTLTPRLEAVIDEMK-GKVVLAKVDIDELTD 90 (141)
Q Consensus 51 ~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~vd~~~~~~ 90 (141)
.+|.+.+.-...++..-+++..-+. .++.|-.+|+..+++
T Consensus 4 ~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~ 44 (99)
T PF04908_consen 4 KVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEE 44 (99)
T ss_dssp EEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HH
T ss_pred EEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHH
Confidence 3343444445555555555444332 369999999987664
No 357
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=28.79 E-value=72 Score=16.30 Aligned_cols=31 Identities=16% Similarity=0.337 Sum_probs=22.7
Q ss_pred hhHHHHHhcCCCcEEEEEecCCChhhhhhhH
Q psy11159 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTP 65 (141)
Q Consensus 35 ~~~~~~i~~~~~~~lv~f~~~~C~~C~~~~~ 65 (141)
+.|+...+..+...++..-...|.-|....|
T Consensus 3 ~~Y~rl~~~~~g~~va~v~~~~C~gC~~~l~ 33 (56)
T PF02591_consen 3 AEYERLRKRKGGVAVARVEGGTCSGCHMELP 33 (56)
T ss_pred HHHHHHHhhcCCcEEEEeeCCccCCCCEEcC
Confidence 3566654444778899999999999976644
No 358
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=28.70 E-value=1.9e+02 Score=19.70 Aligned_cols=51 Identities=10% Similarity=0.284 Sum_probs=32.8
Q ss_pred hHHHHHhcCCCcEEEEEe-----cCCChhhhhhhHHHHHHHHHhc-CCEEEEEEeCC
Q psy11159 36 DFEKKVKNASTPVIVDFF-----ATWCNPCKTLTPRLEAVIDEMK-GKVVLAKVDID 86 (141)
Q Consensus 36 ~~~~~i~~~~~~~lv~f~-----~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~vd~~ 86 (141)
.+.++.....+++|..|. ..-|+-|..+...+......+. .++.|+.|...
T Consensus 59 ~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSra 115 (211)
T PF05988_consen 59 SLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRA 115 (211)
T ss_pred cHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCC
Confidence 344433333667777776 5679999999988844444443 34888877753
No 359
>PF06528 Phage_P2_GpE: Phage P2 GpE; InterPro: IPR009493 This entry is represented by Burkholderia phage phiE202, Gp27. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage and bacterial proteins which are closely related to the GpE tail protein from Phage P2.
Probab=28.69 E-value=79 Score=15.20 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=17.6
Q ss_pred CCCHHHHHHHHHHHHhcccCCC
Q psy11159 118 LQDIDKLKSFIDNLVEKQSAVN 139 (141)
Q Consensus 118 ~~~~~~l~~~i~~~~~~~~~~~ 139 (141)
..+..++..|.++....+.+.+
T Consensus 17 ~m~l~El~~Wre~A~~R~~a~~ 38 (39)
T PF06528_consen 17 AMSLDELMDWRERARRRSGAEN 38 (39)
T ss_pred cCCHHHHHHHHHHHHHHhccCC
Confidence 3588999999999988776654
No 360
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=28.61 E-value=1.4e+02 Score=17.97 Aligned_cols=32 Identities=13% Similarity=0.156 Sum_probs=19.0
Q ss_pred EEecCCChhhhhhhHHHHHHHHHhcCCEEEEE
Q psy11159 51 DFFATWCNPCKTLTPRLEAVIDEMKGKVVLAK 82 (141)
Q Consensus 51 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~ 82 (141)
.+|.+..+.++.+...+.+-.....-.+.+..
T Consensus 3 Iiy~S~tGnT~~~A~~i~~~~~~~g~~v~~~~ 34 (140)
T TIGR01753 3 IVYASMTGNTEEMANIIAEGLKEAGAEVDLLE 34 (140)
T ss_pred EEEECCCcHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34555688888888777665554322344333
No 361
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=28.48 E-value=1.1e+02 Score=16.71 Aligned_cols=66 Identities=12% Similarity=0.173 Sum_probs=34.0
Q ss_pred cCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhh---CCcccccEEEEEeCCeEEEEEecCCCHHHHHHHHHH
Q psy11159 54 ATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD---YEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDN 130 (141)
Q Consensus 54 ~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~---~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 130 (141)
.+||++|.+.+-.+....-. .....++.......... -....+|++.. .+|..+. ....+.++|++
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i~----~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~-~~~~~l~------eS~aI~~yL~~ 81 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGLE----YKTVPVEFPDIPPILGELTSGGFYTVPVIVD-GSGEVIG------DSFAIAEYLEE 81 (84)
T ss_pred CCcCChhHHHHHHHHhCCCC----CeEEEecCCCcccccccccCCCCceeCeEEE-CCCCEEe------CHHHHHHHHHH
Confidence 36889999887666554322 33444454332221111 22456788643 2254332 45566666654
No 362
>PF02484 Rhabdo_NV: Rhabdovirus Non-virion protein; InterPro: IPR003490 Infectious hematopoietic necrosis virus (IHNV) is a member of the family Rhabdoviridae. The non-virion protein (NV) is coded for by one of the six genes of the IHNV genome [], but is absent in vesiculovirus-like rhabdovirus [].
Probab=28.24 E-value=1.1e+02 Score=17.68 Aligned_cols=38 Identities=11% Similarity=0.116 Sum_probs=26.0
Q ss_pred CCcccccEEEEEeCCeEEEEEecCCCHHHHHHHHHHHH
Q psy11159 95 YEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLV 132 (141)
Q Consensus 95 ~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 132 (141)
|.+..--.=++|.+|+.+++..|-.....+...+..++
T Consensus 19 yk~~va~hgflfddg~~vw~e~~d~~w~rl~~vv~al~ 56 (111)
T PF02484_consen 19 YKNEVARHGFLFDDGDIVWSEDDDETWNRLCDVVNALI 56 (111)
T ss_pred HHhhccccceEecCCcEEEecCChHHHHHHHHHHHHHH
Confidence 33333334477899999999888777777766666554
No 363
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=27.94 E-value=2.5e+02 Score=20.72 Aligned_cols=81 Identities=15% Similarity=0.027 Sum_probs=48.8
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeEEEEEecCCCHHHHHHH
Q psy11159 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSF 127 (141)
Q Consensus 48 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~ 127 (141)
.++.++......-..+...+.+++++..-........-..... .-.+.-.++||..+--.-+.++......+.+++.+.
T Consensus 252 p~i~~~D~~~i~~~~l~~~l~~~A~~~~I~~Q~~~~~gGtDa~-~~~~~~~Gvpt~~i~ip~Ry~Hs~~e~i~~~D~~~~ 330 (350)
T TIGR03107 252 TLLRFFDPGHIMLPRMKDFLLTTAEEAGIKYQYYVAKGGTDAG-AAHLKNSGVPSTTIGVCARYIHSHQTLYSIDDFLAA 330 (350)
T ss_pred ceEEEecCCCCCCHHHHHHHHHHHHHcCCCcEEecCCCCchHH-HHHHhCCCCcEEEEccCcccccChhheeeHHHHHHH
Confidence 3445777777788888999999999875334441111112211 123456799998887555666665666666655544
Q ss_pred HH
Q psy11159 128 ID 129 (141)
Q Consensus 128 i~ 129 (141)
++
T Consensus 331 ~~ 332 (350)
T TIGR03107 331 QA 332 (350)
T ss_pred HH
Confidence 43
No 364
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=27.62 E-value=1.1e+02 Score=16.33 Aligned_cols=56 Identities=7% Similarity=0.011 Sum_probs=32.2
Q ss_pred EEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCC---CchhHHhhCCcccccEEEEEeCCeE
Q psy11159 51 DFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDID---ELTDLAMDYEVSAVPVLIAMKNGKE 111 (141)
Q Consensus 51 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~---~~~~~~~~~~v~~~Pt~~~~~~g~~ 111 (141)
.|+.+.|+.|.+.+-.+....- .+.+..+|.. ..+++.+..-...+|++.. .+|..
T Consensus 3 Ly~~~~~~~~~~~~~~l~~~gi----~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~-~~g~~ 61 (75)
T cd03044 3 LYTYPGNPRSLKILAAAKYNGL----DVEIVDFQPGKENKTPEFLKKFPLGKVPAFEG-ADGFC 61 (75)
T ss_pred EecCCCCccHHHHHHHHHHcCC----ceEEEecccccccCCHHHHHhCCCCCCCEEEc-CCCCE
Confidence 4667778888877655554321 3455556553 2344555445667899754 34543
No 365
>PHA02131 hypothetical protein
Probab=27.58 E-value=1e+02 Score=16.08 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=14.4
Q ss_pred ccccEEEEEeCCeEEEEEe
Q psy11159 98 SAVPVLIAMKNGKELDRLI 116 (141)
Q Consensus 98 ~~~Pt~~~~~~g~~~~~~~ 116 (141)
.++-+++.|++|+++.--.
T Consensus 27 ~g~~c~imfk~~~v~dctf 45 (70)
T PHA02131 27 FGISCWIMFKNDQVIDCTF 45 (70)
T ss_pred cceEEEEEEcCCCEEEeee
Confidence 4666899999999887433
No 366
>PF14421 LmjF365940-deam: A distinct subfamily of CDD/CDA-like deaminases
Probab=27.42 E-value=94 Score=20.66 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=17.2
Q ss_pred CChhhhhhhHHHHHHHHHhcCCEEEEEEeCC
Q psy11159 56 WCNPCKTLTPRLEAVIDEMKGKVVLAKVDID 86 (141)
Q Consensus 56 ~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~ 86 (141)
-|+.|..++ .++++. .+++.++..|..
T Consensus 156 PCGaC~ewL---~KIAe~-np~f~v~mFd~t 182 (193)
T PF14421_consen 156 PCGACKEWL---RKIAEA-NPDFRVYMFDDT 182 (193)
T ss_pred cchHHHHHH---HHHHHh-CCCeEEEEecCC
Confidence 377777665 565554 446777777654
No 367
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=27.15 E-value=1e+02 Score=16.09 Aligned_cols=55 Identities=18% Similarity=0.152 Sum_probs=27.6
Q ss_pred EEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCc--hhHHhhCCcccccEEEEEeCCeE
Q psy11159 51 DFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDEL--TDLAMDYEVSAVPVLIAMKNGKE 111 (141)
Q Consensus 51 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~~~g~~ 111 (141)
.++.+.|+.|...+=.+....-. .....++..+. .++.+......+|++.. +|..
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~gi~----~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~--~~~~ 59 (72)
T cd03039 3 LTYFNIRGRGEPIRLLLADAGVE----YEDVRITYEEWPELDLKPTLPFGQLPVLEI--DGKK 59 (72)
T ss_pred EEEEcCcchHHHHHHHHHHCCCC----cEEEEeCHHHhhhhhhccCCcCCCCCEEEE--CCEE
Confidence 35567788888776555544322 33333443221 12233334556798753 5543
No 368
>KOG4578|consensus
Probab=25.96 E-value=1.8e+02 Score=21.52 Aligned_cols=71 Identities=8% Similarity=0.079 Sum_probs=40.9
Q ss_pred HHHhcC-CCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeEE
Q psy11159 39 KKVKNA-STPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKEL 112 (141)
Q Consensus 39 ~~i~~~-~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 112 (141)
+..... +.+.|-.-|.-.|..|......-.+.+++-+ .+-+=.+.-|-+-.-.+=++-.| .+.+-.+|+.|
T Consensus 58 e~qRAkC~dpql~~~yrG~Ck~C~~erk~a~eQa~k~~-~vFvPeC~~DG~f~qvQCh~ytG--CWCvtp~GrPI 129 (421)
T KOG4578|consen 58 ELQRAKCGDPQLSLKYRGSCKACLEERKFAREQAEKDP-GVFVPECRKDGNFAQVQCHGYTG--CWCVTPQGRPI 129 (421)
T ss_pred HHHHhhcCCCceeEEecCcHHHHHHHHHHHHHhhhcCC-ceecccccCCCCeeeEEeccccc--eEEeCCCCccc
Confidence 333334 7788888999999999999888887777654 23322333332222222233333 45555555544
No 369
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=25.51 E-value=1.4e+02 Score=22.17 Aligned_cols=46 Identities=20% Similarity=0.315 Sum_probs=33.9
Q ss_pred hhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcccccEEEEEeCCeEEEE
Q psy11159 61 KTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDR 114 (141)
Q Consensus 61 ~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 114 (141)
..|...+.+++++++.-+.|+.-|.|+.-.+.. .+.+.++|+.+..
T Consensus 201 ~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~--------rIaimkdG~ivQ~ 246 (386)
T COG4175 201 TEMQDELLELQAKLKKTIVFITHDLDEALRIGD--------RIAIMKDGEIVQV 246 (386)
T ss_pred HHHHHHHHHHHHHhCCeEEEEecCHHHHHhccc--------eEEEecCCeEEEe
Confidence 456778888889988779999888877654433 2566688887764
No 370
>PRK09864 putative peptidase; Provisional
Probab=25.34 E-value=2.9e+02 Score=20.53 Aligned_cols=82 Identities=11% Similarity=0.084 Sum_probs=46.9
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEe-CCCchhHHhhCCcccccEEEEEeCCeEEEEEecCCCHHH
Q psy11159 45 STPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVD-IDELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDK 123 (141)
Q Consensus 45 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd-~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~ 123 (141)
+.|++ .++....-.-..+...+.+++++..=...+.... ...+.... ++.-.++||.++----+.++...+..+.++
T Consensus 249 ~Gp~i-~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q~~~~~~ggTDa~~i-~~~~~Gvpt~~isiP~RY~Hs~~e~~~~~D 326 (356)
T PRK09864 249 QGPGL-MLFDKRYFPNQKLVAALKSCAAHNDLPLQFSTMKTGATDGGRY-NVMGGGRPVVALCLPTRYLHANSGMISKAD 326 (356)
T ss_pred CCCeE-EEccCCccCCHHHHHHHHHHHHHcCCCceEEEcCCCCchHHHH-HHhCCCCcEEEEeeccCcCCCcceEeEHHH
Confidence 34544 4666666667788888899998875333332222 12222222 234468998888755565665555555555
Q ss_pred HHHHH
Q psy11159 124 LKSFI 128 (141)
Q Consensus 124 l~~~i 128 (141)
+++.+
T Consensus 327 ~e~~~ 331 (356)
T PRK09864 327 YDALL 331 (356)
T ss_pred HHHHH
Confidence 54443
No 371
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=25.08 E-value=1.9e+02 Score=18.46 Aligned_cols=36 Identities=6% Similarity=0.176 Sum_probs=23.1
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHhcC-CEEEEEE
Q psy11159 45 STPVIVDFFATWCNPCKTLTPRLEAVIDEMKG-KVVLAKV 83 (141)
Q Consensus 45 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v 83 (141)
++-..+++--+-|++|+ ..+..++++..- .+.+...
T Consensus 99 g~~~tm~Vdr~vC~~C~---~~i~~~a~~lGl~~L~I~~~ 135 (146)
T PF14437_consen 99 GRSMTMYVDRDVCGYCG---GDIPSMAEKLGLKSLTIHEP 135 (146)
T ss_pred CCeEEEEECcccchHHH---HHHHHHHHHcCCCeEEEEec
Confidence 34455566688999999 667777777652 3444433
No 372
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.08 E-value=3.3e+02 Score=21.20 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=13.9
Q ss_pred HHHHHHHHhcCCEEEEEEeCCC
Q psy11159 66 RLEAVIDEMKGKVVLAKVDIDE 87 (141)
Q Consensus 66 ~l~~~~~~~~~~~~~~~vd~~~ 87 (141)
..+++.+.++ +..+..+|.|.
T Consensus 274 ~~e~l~~~fp-~~~v~~~d~d~ 294 (505)
T TIGR00595 274 VEEELAKLFP-GARIARIDSDT 294 (505)
T ss_pred HHHHHHhhCC-CCcEEEEeccc
Confidence 3455566666 57788888764
No 373
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=25.00 E-value=3.1e+02 Score=22.67 Aligned_cols=22 Identities=14% Similarity=0.142 Sum_probs=15.5
Q ss_pred HHHHHHHhcCCEEEEEEeCCCch
Q psy11159 67 LEAVIDEMKGKVVLAKVDIDELT 89 (141)
Q Consensus 67 l~~~~~~~~~~~~~~~vd~~~~~ 89 (141)
-+++.+.|+ +..++.+|.|...
T Consensus 497 eeeL~~~FP-~~rv~r~d~Dtt~ 518 (730)
T COG1198 497 EEELKRLFP-GARIIRIDSDTTR 518 (730)
T ss_pred HHHHHHHCC-CCcEEEEcccccc
Confidence 355566666 6889999988643
No 374
>COG3422 Uncharacterized conserved protein [Function unknown]
Probab=24.94 E-value=1.2e+02 Score=16.03 Aligned_cols=32 Identities=16% Similarity=0.139 Sum_probs=26.8
Q ss_pred eCCeEEEEEecCCCHHHHHHHHHHHHhcccCC
Q psy11159 107 KNGKELDRLIGLQDIDKLKSFIDNLVEKQSAV 138 (141)
Q Consensus 107 ~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~ 138 (141)
.||+.+....|+.+.+.-.+-|+..-.+.++.
T Consensus 22 ~N~eiI~~sEgY~skasa~ngI~svk~Nsp~a 53 (59)
T COG3422 22 ANGEIILTSEGYKSKASAENGIASVKSNSPAA 53 (59)
T ss_pred cCccEEEeecccchhHHHHHHHHHHhhcCCCC
Confidence 58899999999999999999999887766654
No 375
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=24.04 E-value=1.6e+02 Score=20.72 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=26.0
Q ss_pred CchhHHhhCCcccccEEEEEeCCeEEEEEec-CCCHHHHHHHHHHH
Q psy11159 87 ELTDLAMDYEVSAVPVLIAMKNGKELDRLIG-LQDIDKLKSFIDNL 131 (141)
Q Consensus 87 ~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g-~~~~~~l~~~i~~~ 131 (141)
-.+++.++++|.-+|.-+.+. |+ ....| ..+.++|.+.+++.
T Consensus 12 l~~~~~~~~~i~vvPl~i~~~-~~--~y~D~~~i~~~efy~~l~~~ 54 (280)
T PF02645_consen 12 LPPELAEEYGIYVVPLNIIID-GK--EYRDGVDISPEEFYEKLRES 54 (280)
T ss_dssp --HHHHHHTTEEEE--EEEET-TE--EEETTTTSCHHHHHHHHHHT
T ss_pred CCHHHHHhCCeEEEeEEEecC-Ce--EEecCCCCCHHHHHHHHHhc
Confidence 345778899999999877774 42 22233 56788888877553
No 376
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=24.04 E-value=1e+02 Score=17.51 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=17.8
Q ss_pred HHhhCCcccccEEEEEeCCeEEEE
Q psy11159 91 LAMDYEVSAVPVLIAMKNGKELDR 114 (141)
Q Consensus 91 ~~~~~~v~~~Pt~~~~~~g~~~~~ 114 (141)
-++.+++...+++++..+|.++..
T Consensus 30 ~~~~L~~~~~~~lvLeeDGT~Vd~ 53 (81)
T cd06537 30 ALETLLLSGVLTLVLEEDGTAVDS 53 (81)
T ss_pred HHHHhCCCCceEEEEecCCCEEcc
Confidence 456677776678888899988753
No 377
>cd00307 RuBisCO_small_like Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit and related proteins. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits. This superfamily also contains specific proteins from cyanobacteria. CcmM plays a role in a CO2 concentrating mechanism, which cyanobacteria need to to overcome t
Probab=23.78 E-value=1.1e+02 Score=17.44 Aligned_cols=30 Identities=30% Similarity=0.530 Sum_probs=18.7
Q ss_pred Chhh--hhhhHHHHHH---HHHhcCC-EEEEEEeCC
Q psy11159 57 CNPC--KTLTPRLEAV---IDEMKGK-VVLAKVDID 86 (141)
Q Consensus 57 C~~C--~~~~~~l~~~---~~~~~~~-~~~~~vd~~ 86 (141)
|..| ......+.++ .+++++. +.++.+|..
T Consensus 36 ~f~~~~~~~~~Vl~el~~c~~~~p~~YVRlig~D~~ 71 (84)
T cd00307 36 CGPIEGRSEAQVLAALEACLAEHPGEYVRLIGIDPK 71 (84)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeCC
Confidence 6666 5555555555 5667653 777777754
No 378
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=23.03 E-value=1.2e+02 Score=17.18 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=17.4
Q ss_pred HHhhCCcccccEEEEEeCCeEEE
Q psy11159 91 LAMDYEVSAVPVLIAMKNGKELD 113 (141)
Q Consensus 91 ~~~~~~v~~~Pt~~~~~~g~~~~ 113 (141)
.++.|++...+++++..+|.++.
T Consensus 30 ~~~~l~l~~~~~lvL~eDGT~Vd 52 (79)
T cd06538 30 VLDALLLDCISSLVLDEDGTGVD 52 (79)
T ss_pred HHHHcCCCCccEEEEecCCcEEc
Confidence 56677886656888889998775
No 379
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=22.90 E-value=1.7e+02 Score=20.56 Aligned_cols=42 Identities=14% Similarity=0.236 Sum_probs=26.5
Q ss_pred CchhHHhhCCcccccEEEEEeCCeEEEEEecCCCHHHHHHHHHH
Q psy11159 87 ELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDN 130 (141)
Q Consensus 87 ~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 130 (141)
-.++..++++|.-+|.-+.+ +|+.... .-..+.+++.+.+.+
T Consensus 11 l~~~~~~~~~I~vvPl~I~~-~~~~y~D-~~~i~~~~~y~~~~~ 52 (275)
T TIGR00762 11 LPPELIEEYGITVVPLTVII-DGKTYRD-GVDITPEEFYEKLKE 52 (275)
T ss_pred CCHHHHHHcCCEEEEEEEEE-CCEEeec-CCCCCHHHHHHHHHh
Confidence 34677889999999977666 4443322 112566666666654
No 380
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=22.82 E-value=1.1e+02 Score=20.17 Aligned_cols=41 Identities=22% Similarity=0.129 Sum_probs=24.7
Q ss_pred eChhhHHHHHhcC-CCcEEEEEecCCChhhhhhhHHHHHHHH
Q psy11159 32 QDMNDFEKKVKNA-STPVIVDFFATWCNPCKTLTPRLEAVID 72 (141)
Q Consensus 32 ~~~~~~~~~i~~~-~~~~lv~f~~~~C~~C~~~~~~l~~~~~ 72 (141)
.+.+++-+.+++. +.|++|+|=..--.---.=...+..++.
T Consensus 38 lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~~v~~ 79 (180)
T PF14097_consen 38 LSGEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALEYVAN 79 (180)
T ss_pred CCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHHHHHc
Confidence 4777888888765 8899999965433222222334444443
No 381
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=22.79 E-value=1.1e+02 Score=14.75 Aligned_cols=17 Identities=18% Similarity=0.417 Sum_probs=14.1
Q ss_pred EEecCCCHHHHHHHHHH
Q psy11159 114 RLIGLQDIDKLKSFIDN 130 (141)
Q Consensus 114 ~~~g~~~~~~l~~~i~~ 130 (141)
...|+.+.++|.+++.+
T Consensus 9 ~~~GP~s~~el~~l~~~ 25 (45)
T PF14237_consen 9 QQQGPFSLEELRQLISS 25 (45)
T ss_pred eEECCcCHHHHHHHHHc
Confidence 45689999999998875
No 382
>PF15379 DUF4606: Domain of unknown function (DUF4606)
Probab=22.51 E-value=84 Score=18.75 Aligned_cols=18 Identities=17% Similarity=0.398 Sum_probs=13.3
Q ss_pred ecCCChhhhhhhHHHHHH
Q psy11159 53 FATWCNPCKTLTPRLEAV 70 (141)
Q Consensus 53 ~~~~C~~C~~~~~~l~~~ 70 (141)
-++.|+.|.+-+..+.+.
T Consensus 30 ~~s~Cp~C~kkraeLa~~ 47 (104)
T PF15379_consen 30 NSSQCPSCNKKRAELAQS 47 (104)
T ss_pred CcccChHHHHHHHHHHHH
Confidence 467899999887666544
No 383
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=22.48 E-value=26 Score=23.24 Aligned_cols=36 Identities=25% Similarity=0.430 Sum_probs=19.9
Q ss_pred CcEEEEEecCCChhhhhhhHHHHHHHHHhcCCEEEEEE
Q psy11159 46 TPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKV 83 (141)
Q Consensus 46 ~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v 83 (141)
+..+=.||..||..|.. |.+.+-....++.+..+++
T Consensus 6 ~~~~gk~~iyWCe~cNl--Pl~~~~c~~cg~~~~~l~L 41 (202)
T COG5270 6 PVVLGKFPIYWCEKCNL--PLLGRRCSVCGSKVEELRL 41 (202)
T ss_pred ceeecccceeehhhCCC--ccccccccccCCcceEEEe
Confidence 34555788999999973 3343333333333443433
No 384
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=22.45 E-value=2e+02 Score=21.00 Aligned_cols=41 Identities=15% Similarity=0.112 Sum_probs=31.0
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhcC-CEEEEEEe
Q psy11159 44 ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG-KVVLAKVD 84 (141)
Q Consensus 44 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd 84 (141)
++||+++.|-...=+..+.+...+.+.+++.+- .+.++.+.
T Consensus 157 dGKPv~~Iy~p~~~pd~~~~~~~wr~~a~~~G~~giyii~~~ 198 (345)
T PF14307_consen 157 DGKPVFLIYRPGDIPDIKEMIERWREEAKEAGLPGIYIIAVQ 198 (345)
T ss_pred CCEEEEEEECcccccCHHHHHHHHHHHHHHcCCCceEEEEEe
Confidence 589998888777778889999999998888652 35555444
No 385
>KOG0855|consensus
Probab=22.43 E-value=2.4e+02 Score=18.67 Aligned_cols=28 Identities=18% Similarity=0.405 Sum_probs=15.2
Q ss_pred CCcEEEEEec-CCChhhhh----hhHHHHHHHH
Q psy11159 45 STPVIVDFFA-TWCNPCKT----LTPRLEAVID 72 (141)
Q Consensus 45 ~~~~lv~f~~-~~C~~C~~----~~~~l~~~~~ 72 (141)
++++|++||- ..-|-|.+ ++..++++.+
T Consensus 90 nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kk 122 (211)
T KOG0855|consen 90 NKPVVLFFYPAASTPGCTKQACGFRDNYEKFKK 122 (211)
T ss_pred CCcEEEEEeccCCCCCcccccccccccHHHHhh
Confidence 5588888883 23344433 4445555544
No 386
>PRK08351 DNA-directed RNA polymerase subunit E''; Validated
Probab=21.75 E-value=62 Score=17.29 Aligned_cols=38 Identities=16% Similarity=0.309 Sum_probs=23.2
Q ss_pred ecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCCchhHHhhCCcc
Q psy11159 53 FATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVS 98 (141)
Q Consensus 53 ~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~ 98 (141)
....||.|.... +.++..+ -++.+|.+ +.++++++|+.
T Consensus 14 ~~~~CP~Cgs~~-----~T~~W~G--~viI~dPe-~S~IAk~l~i~ 51 (61)
T PRK08351 14 TEDRCPVCGSRD-----LSDEWFD--LVIIIDVE-NSRIAKKLGAK 51 (61)
T ss_pred CCCcCCCCcCCc-----ccccccc--EEEEeCCc-HhHHHHHhCCC
Confidence 355699998733 4444443 23345555 45889999984
No 387
>KOG0095|consensus
Probab=21.37 E-value=2.4e+02 Score=18.28 Aligned_cols=44 Identities=14% Similarity=0.259 Sum_probs=30.7
Q ss_pred ChhhHHHHHhcC--CCcEEEEEecCCChhhhhhhHHHHHHHHHhcC
Q psy11159 33 DMNDFEKKVKNA--STPVIVDFFATWCNPCKTLTPRLEAVIDEMKG 76 (141)
Q Consensus 33 ~~~~~~~~i~~~--~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~ 76 (141)
..+.|..+-... .--.+|..|.-.|.+.-...|.|-+-.+.|.+
T Consensus 65 gqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan 110 (213)
T KOG0095|consen 65 GQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYAN 110 (213)
T ss_pred chHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhh
Confidence 344555543221 34578889999999999999988776666653
No 388
>PF11453 DUF2950: Protein of unknown function (DUF2950); InterPro: IPR021556 This is a bacterial family of uncharacterised proteins.
Probab=21.31 E-value=1.1e+02 Score=21.64 Aligned_cols=38 Identities=13% Similarity=0.258 Sum_probs=28.3
Q ss_pred HHhhCCcccccEEEEEeCCeEEEEEecCCCHHHHHHHHH
Q psy11159 91 LAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129 (141)
Q Consensus 91 ~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~ 129 (141)
...+||.+++=||++-++|.+..+.-|..+ +...+.|.
T Consensus 223 wPa~YG~TGVmtF~Vn~~g~VYqkDLG~~t-~~~A~ai~ 260 (271)
T PF11453_consen 223 WPAEYGETGVMTFMVNQDGQVYQKDLGPDT-AAKAAAIT 260 (271)
T ss_pred eehhhCCCceEEEEECCCCcEEecccCcch-HHHhhhhh
Confidence 345889999999999999999998888844 33434443
No 389
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=21.11 E-value=1.7e+02 Score=16.48 Aligned_cols=42 Identities=17% Similarity=0.229 Sum_probs=24.9
Q ss_pred hHHhhCCcccccEEEEEeCCeEEEEEecCCCHHHHHHHHHHHHhcc
Q psy11159 90 DLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEKQ 135 (141)
Q Consensus 90 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~ 135 (141)
.++.++++.|+ +--..+|.+.....| +.+.+..+++.+....
T Consensus 25 ~~A~~~gl~G~--V~N~~dg~V~i~~~G--~~~~l~~f~~~l~~g~ 66 (91)
T PF00708_consen 25 RIARKLGLTGW--VRNLPDGSVEIEAEG--EEEQLEEFIKWLKKGP 66 (91)
T ss_dssp HHHHHTT-EEE--EEE-TTSEEEEEEEE--EHHHHHHHHHHHHHSS
T ss_pred HHHHHhCCceE--EEECCCCEEEEEEEe--CHHHHHHHHHHHHhCC
Confidence 56778888884 222367766667777 4555666666655443
No 390
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=21.06 E-value=1.5e+02 Score=15.68 Aligned_cols=55 Identities=9% Similarity=0.138 Sum_probs=32.0
Q ss_pred EEecCCChhhhhhhHHHHHHHHHhcCCEEEEEEeCCC----chhHHhhCCcccccEEEEEeCCeE
Q psy11159 51 DFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDE----LTDLAMDYEVSAVPVLIAMKNGKE 111 (141)
Q Consensus 51 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~g~~ 111 (141)
.|+.+-++.|++..-.+....-. .....++..+ .+++.+......+|++. .+|..
T Consensus 3 ly~~~~s~~~~~v~~~l~~~g~~----~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~ 61 (76)
T cd03050 3 LYYDLMSQPSRAVYIFLKLNKIP----FEECPIDLRKGEQLTPEFKKINPFGKVPAIV--DGDFT 61 (76)
T ss_pred EeeCCCChhHHHHHHHHHHcCCC----cEEEEecCCCCCcCCHHHHHhCcCCCCCEEE--ECCEE
Confidence 56777888998776555554322 3444555432 23455555567789875 35543
No 391
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=20.69 E-value=15 Score=17.59 Aligned_cols=11 Identities=0% Similarity=0.422 Sum_probs=8.3
Q ss_pred CHHHHHHHHHH
Q psy11159 120 DIDKLKSFIDN 130 (141)
Q Consensus 120 ~~~~l~~~i~~ 130 (141)
+.+++.+|+++
T Consensus 39 ~~~~l~~~~~~ 49 (49)
T TIGR01764 39 PREDVDEYLEQ 49 (49)
T ss_pred eHHHHHHHHhC
Confidence 77888888763
No 392
>PF10589 NADH_4Fe-4S: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; InterPro: IPR019575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the F subunit of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. This entry represents the iron-sulphur binding domain of the F subunit.; GO: 0055114 oxidation-reduction process; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1.
Probab=20.59 E-value=66 Score=15.85 Aligned_cols=20 Identities=25% Similarity=0.725 Sum_probs=13.1
Q ss_pred CChhhhhhhHHHHHHHHHhc
Q psy11159 56 WCNPCKTLTPRLEAVIDEMK 75 (141)
Q Consensus 56 ~C~~C~~~~~~l~~~~~~~~ 75 (141)
.|.+|+.=.+.+.++.++..
T Consensus 18 kC~PCR~Gt~~l~~~l~~i~ 37 (46)
T PF10589_consen 18 KCTPCREGTRQLAEILEKIV 37 (46)
T ss_dssp --HHHHCCCCHHHHHHHHHT
T ss_pred CCCCcHhHHHHHHHHHHHHH
Confidence 68899877777777766553
No 393
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.40 E-value=2.5e+02 Score=18.06 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=19.4
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhcCCEEE
Q psy11159 50 VDFFATWCNPCKTLTPRLEAVIDEMKGKVVL 80 (141)
Q Consensus 50 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~ 80 (141)
|..=|+-|| ....+.+++++++-.+.|
T Consensus 4 I~VDADACP----Vk~~i~r~A~r~~~~v~~ 30 (150)
T COG1671 4 IWVDADACP----VKDEIYRVAERMGLKVTF 30 (150)
T ss_pred EEEeCCCCc----hHHHHHHHHHHhCCeEEE
Confidence 345578899 888889999988643333
No 394
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=20.22 E-value=81 Score=17.51 Aligned_cols=19 Identities=26% Similarity=0.452 Sum_probs=13.9
Q ss_pred CCcccc--cEEEEEeCCeEEE
Q psy11159 95 YEVSAV--PVLIAMKNGKELD 113 (141)
Q Consensus 95 ~~v~~~--Pt~~~~~~g~~~~ 113 (141)
+.|.|. |++..+++|+.+.
T Consensus 5 ~~v~G~P~Pti~W~kng~~l~ 25 (79)
T cd05855 5 FTVKGNPKPTLQWFHEGAILN 25 (79)
T ss_pred EEEeEeCCCceEEEECCEECC
Confidence 345555 5999999998774
Done!