RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11159
(141 letters)
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion,
electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB:
1uvz_A 1w89_A
Length = 119
Score = 121 bits (306), Expect = 5e-37
Identities = 58/106 (54%), Positives = 83/106 (78%)
Query: 27 TSFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDID 86
T+F +QD DF+ +V N+ TPV+VDF A WC PCK L PRLE ++ + GKVV+AKVDID
Sbjct: 13 TTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDID 72
Query: 87 ELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLV 132
+ TDLA++YEVSAVP ++AMKNG +D+ +G++D D+L++F+ L+
Sbjct: 73 DHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLI 118
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
2.90A {Bacillus cereus}
Length = 105
Score = 114 bits (287), Expect = 3e-34
Identities = 17/104 (16%), Positives = 42/104 (40%), Gaps = 2/104 (1%)
Query: 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT 89
+ + + ++ V++ C C + ++ V++ V ++ + ++
Sbjct: 4 TFKTIEELATYIEE-QQLVLLFIKTENCGVCDVMLRKVNYVLENYN-YVEKIEILLQDMQ 61
Query: 90 DLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVE 133
++A Y V P ++ NGKE+ R ++ L+ I E
Sbjct: 62 EIAGRYAVFTGPTVLLFYNGKEILRESRFISLENLERTIQLFEE 105
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron
transport; 2.20A {Drosophila melanogaster} SCOP:
c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Length = 106
Score = 108 bits (273), Expect = 4e-32
Identities = 37/100 (37%), Positives = 63/100 (63%), Gaps = 2/100 (2%)
Query: 31 VQDMNDFEKKVKNAST-PVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT 89
V+D D + ++ AS V++DFFATWC PCK ++P+L + + VV+ KVD+DE
Sbjct: 5 VKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECE 64
Query: 90 DLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
D+AM+Y +S++P + +KNG +++ G + +L+ I
Sbjct: 65 DIAMEYNISSMPTFVFLKNGVKVEEFAGA-NAKRLEDVIK 103
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium
falciparum}
Length = 128
Score = 107 bits (269), Expect = 2e-31
Identities = 24/95 (25%), Positives = 45/95 (47%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD 94
++ V +T +++ FFA WC C + ++ + ++ L KVD+D+ LA
Sbjct: 32 SNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARK 91
Query: 95 YEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
+ V ++P +I +KN L R + L + I
Sbjct: 92 FSVKSLPTIILLKNKTMLARKDHFVSSNDLIALIK 126
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas
reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Length = 112
Score = 105 bits (265), Expect = 8e-31
Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 30 KVQDMNDFEKKVKNA---STPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDID 86
+ ++ ++ P++VDF ATWC PCK + P E + ++ GKV+ KVD+D
Sbjct: 6 VIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVD 65
Query: 87 ELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
+ +A ++A+P K+G + D L+G DKLK+ +
Sbjct: 66 AVAAVAEAAGITAMPTFHVYKDGVKADDLVG-ASQDKLKALVA 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 110 bits (276), Expect = 1e-30
Identities = 25/106 (23%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 33 DMNDFEKKVKN-ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDL 91
+ ++ ++ ++ +TPV+ F++ C LTP LE++ + G+ +LAK+D D +
Sbjct: 13 NESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQMI 72
Query: 92 AMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEKQSA 137
A + + A+P + +NG+ +D G Q + +++ +D ++ ++
Sbjct: 73 AAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRALLDXVLPREEE 118
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics;
1.99A {Desulfitobacterium hafniense dcb-2}
Length = 111
Score = 105 bits (263), Expect = 2e-30
Identities = 23/99 (23%), Positives = 49/99 (49%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD 94
N FE+ + + +V F C+ C+ +TP LE + + VD++E L
Sbjct: 12 NTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQR 71
Query: 95 YEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVE 133
+ + VP ++ K+G+ ++ G + D+++ I +++E
Sbjct: 72 FSLKGVPQILYFKDGEYKGKMAGDVEDDEVEQMIADVLE 110
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A
{Rhodobacter capsulatus}
Length = 155
Score = 106 bits (265), Expect = 2e-30
Identities = 27/97 (27%), Positives = 48/97 (49%)
Query: 36 DFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDY 95
+ + P++VDF+A WC PC+ + P+ +A + G+V LAK+D +A +
Sbjct: 55 AILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRH 114
Query: 96 EVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLV 132
+ +P I G+EL R G + +L F+ +
Sbjct: 115 RIQGIPAFILFHKGRELARAAGARPASELVGFVRGKL 151
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine
nucleotide disulfide oxidoreductase, electron TRAN
oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB:
3qfb_C*
Length = 116
Score = 104 bits (262), Expect = 3e-30
Identities = 30/104 (28%), Positives = 58/104 (55%), Gaps = 3/104 (2%)
Query: 30 KVQDMNDFEKKVKNAS-TPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDEL 88
+++ F++ + A V+VDF ATWC P K + P ++ ++ V+ +VD+D+
Sbjct: 15 QIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYS-NVIFLEVDVDDC 73
Query: 89 TDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLV 132
D+A + EV ++P K G+++ G + +KL++ I+ LV
Sbjct: 74 QDVASECEVKSMPTFQFFKKGQKVGEFSGA-NKEKLEATINELV 116
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure
initiative, structural genomics; 2.30A {Methanosarcina
mazei}
Length = 140
Score = 104 bits (262), Expect = 4e-30
Identities = 23/105 (21%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Query: 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT 89
+ +DM + ++V+++ PV+V F++ C CK + P E E V +++I
Sbjct: 10 EFEDMT-WSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIATNP 68
Query: 90 DLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEK 134
A Y V P +G+ + +G LK+ + ++++
Sbjct: 69 WTAEKYGVQGTPTFKFFCHGRPVWEQVGQIYPSILKNAVRDMLQH 113
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB:
2l6d_A
Length = 110
Score = 103 bits (258), Expect = 7e-30
Identities = 18/97 (18%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD 94
+ + IV F C CK + L+ +V ++ VD + +L +
Sbjct: 9 TEAGMAHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARA-PQVAISSVDSEARPELMKE 67
Query: 95 YEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNL 131
VP L+ +++GK G+ + +L++ ++
Sbjct: 68 LGFERVPTLVFIRDGKVAKVFSGIMNPRELQALYASI 104
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome
research, oxidoreductase; NMR {Oryza sativa}
Length = 130
Score = 104 bits (260), Expect = 8e-30
Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 5/114 (4%)
Query: 30 KVQDMNDFEKKVKNA---STPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDID 86
+ ++F+ ++ A VI+DF A+WC PC+ + P + G V L KVD+D
Sbjct: 18 ACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFL-KVDVD 76
Query: 87 ELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEKQSAVNS 140
EL ++A Y V A+P + +K+G E D+++G D L++ I V +A S
Sbjct: 77 ELKEVAEKYNVEAMPTFLFIKDGAEADKVVGA-RKDDLQNTIVKHVGATAASAS 129
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Length = 118
Score = 103 bits (258), Expect = 9e-30
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD 94
++K A V+VDFFATWC PC+ L L ++ + V KVD+D+ + A
Sbjct: 13 EALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN-KDVTFIKVDVDKNGNAADA 71
Query: 95 YEVSAVPVLIAMKNG----KELDRLIGLQDIDKLKSFIDNLVEKQS 136
Y VS++P L +K K LD+ +G D+ ++K+ I+
Sbjct: 72 YGVSSIPALFFVKKEGNEIKTLDQFVG-ADVSRIKADIEKFKHHHH 116
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A
{Trypanosoma} SCOP: c.47.1.1
Length = 125
Score = 103 bits (259), Expect = 9e-30
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Query: 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT 89
V + F + + + F A WC PCKT+ +E + E V AKVD D +
Sbjct: 23 DVYSVEQFRN-IMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADNNS 80
Query: 90 DLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEK 134
++ V +P I ++GK L +IG + L+ + ++++
Sbjct: 81 EIVSKCRVLQLPTFIIARSGKMLGHVIGA-NPGMLRQKLRDIIKD 124
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A
2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A
1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A*
1cqg_A 1cqh_A 1mdi_A ...
Length = 105
Score = 102 bits (257), Expect = 9e-30
Identities = 31/104 (29%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 30 KVQDMNDFEKKVKNA-STPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDEL 88
+++ F++ + A V+VDF ATWC PCK + P ++ ++ V+ +VD+D+
Sbjct: 4 QIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-NVIFLEVDVDDC 62
Query: 89 TDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLV 132
D+A + EV ++P K G+++ G + +KL++ I+ LV
Sbjct: 63 QDVASESEVKSMPTFQFFKKGQKVGEFSGA-NKEKLEATINELV 105
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A
{Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Length = 117
Score = 103 bits (258), Expect = 1e-29
Identities = 35/103 (33%), Positives = 60/103 (58%), Gaps = 4/103 (3%)
Query: 31 VQDMNDFEKKVKNAS-TPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT 89
++ D E ++ V+VDFFATWC PCKT+ P + + ++ + KVD+D+L
Sbjct: 18 LKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY--DAIFVKVDVDKLE 75
Query: 90 DLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLV 132
+ A Y +SA+P IA+KNG+++ ++G I K++ I +
Sbjct: 76 ETARKYNISAMPTFIAIKNGEKVGDVVG-ASIAKVEDMIKKFI 117
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized,
dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A
2oe0_A
Length = 114
Score = 102 bits (257), Expect = 1e-29
Identities = 33/102 (32%), Positives = 59/102 (57%), Gaps = 3/102 (2%)
Query: 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT 89
K+ ++ +F +K + +++DF+ATWC PCK + P L +I V K D+DE
Sbjct: 16 KLTNLTEFRNLIKQ-NDKLVIDFYATWCGPCKMMQPHLTKLIQAYP-DVRFVKCDVDESP 73
Query: 90 DLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNL 131
D+A + EV+A+P + K+G+ + ++IG + L+ I +L
Sbjct: 74 DIAKECEVTAMPTFVLGKDGQLIGKIIGA-NPTALEKGIKDL 114
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE,
fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Length = 121
Score = 102 bits (255), Expect = 3e-29
Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 9/116 (7%)
Query: 22 GSAVYTSFKVQDMN-------DFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEM 74
GS + V + D K+V V++DF+ATWC PCK + P E + D
Sbjct: 3 GSHHHHHHLVPRGSVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTP 62
Query: 75 KG-KVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
G KV KVD+DE + +A + + A+P + KNG+++D ++G D KL++ I
Sbjct: 63 AGDKVGFYKVDVDEQSQIAQEVGIRAMPTFVFFKNGQKIDTVVGA-DPSKLQAAIT 117
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola
hepatica}
Length = 104
Score = 101 bits (254), Expect = 3e-29
Identities = 37/100 (37%), Positives = 59/100 (59%), Gaps = 3/100 (3%)
Query: 31 VQDMNDFEKKVKNAS-TPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT 89
+ D EK + ++VDFFA WC PC+ + P++EA+ E+ +V AKVD+D+
Sbjct: 4 LATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP-EVEFAKVDVDQNE 62
Query: 90 DLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
+ A Y V+A+P + +K+GKE+DR G + KL+ I
Sbjct: 63 EAAAKYSVTAMPTFVFIKDGKEVDRFSGA-NETKLRETIT 101
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport;
1.60A {Nostoc SP} SCOP: c.47.1.1
Length = 115
Score = 101 bits (254), Expect = 4e-29
Identities = 32/98 (32%), Positives = 53/98 (54%)
Query: 36 DFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDY 95
+FE +V A PV+V F+A+WC PC+ ++P + + ++ + K++ID Y
Sbjct: 16 EFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKY 75
Query: 96 EVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVE 133
+V VP L +K + LD G+ DKL SF+D +
Sbjct: 76 KVEGVPALRLVKGEQILDSTEGVISKDKLLSFLDTHLN 113
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Length = 153
Score = 102 bits (256), Expect = 4e-29
Identities = 25/112 (22%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Query: 31 VQDMNDFEKKVKNAS-TPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT 89
V FE+ ++ + + ++V F+A W C + + + E+ +V K++ + +
Sbjct: 17 VGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP-QVSFVKLEAEGVP 75
Query: 90 DLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEKQSAVNSP 141
+++ YE+S+VP + KN +++DRL G +L + S + S
Sbjct: 76 EVSEKYEISSVPTFLFFKNSQKIDRLDGA-HAPELTKKVQRHASSGSFLPSA 126
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP:
c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B*
1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B*
1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T*
2h6x_A ...
Length = 108
Score = 101 bits (253), Expect = 5e-29
Identities = 37/107 (34%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
Query: 28 SFKVQDMND--FEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDI 85
S K+ + D F+ V A ++VDF+A WC PCK + P L+ + DE +GK+ +AK++I
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 60
Query: 86 DELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLV 132
D+ A Y + +P L+ KNG+ +G +LK F+D +
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 107
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2,
protein STRU initiative; NMR {Bacteroides vulgatus}
Length = 136
Score = 101 bits (254), Expect = 6e-29
Identities = 28/103 (27%), Positives = 51/103 (49%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD 94
+ E+ P IVDF+A WC PCK + P L+ + E G++V+ KVD ++ +LA
Sbjct: 28 KNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGA 87
Query: 95 YEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEKQSA 137
+ + ++P ++ + + + G K ID + K+
Sbjct: 88 FGIRSIPSILFIPMEGKPEMAQGAMPKASFKKAIDEFLLKKEG 130
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport;
2.22A {Homo sapiens} SCOP: c.47.1.1
Length = 107
Score = 100 bits (251), Expect = 8e-29
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 3/104 (2%)
Query: 31 VQDMNDFEKKVKNA-STPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT 89
V DF+ ++ A S +V F C PC + P ++ ++ + V +VD+ +
Sbjct: 6 VGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP-QAVFLEVDVHQCQ 64
Query: 90 DLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVE 133
A +SA P +N +D+ G D L+ I +E
Sbjct: 65 GTAATNNISATPTFQFFRNKVRIDQYQGA-DAVGLEEKIKQHLE 107
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase,
thioredoxin-fold, protein disulfide reductase; 1.70A
{Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Length = 122
Score = 100 bits (252), Expect = 8e-29
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 16 SRSLSVGSAVYTSFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMK 75
+ + +V + V + ++ ++ A V++DF A+WC PC+ + P + +
Sbjct: 5 ATAAAVAAEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFP 64
Query: 76 GKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEKQ 135
V L KVD+DEL +A + V A+P + MK G DR++G ++L + + Q
Sbjct: 65 NAVFL-KVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGA-IKEELTAKVGLHAAAQ 122
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A
{Escherichia coli}
Length = 128
Score = 101 bits (253), Expect = 8e-29
Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Query: 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT 89
+ D + F+ V A ++VDF+A WC P K + P L+ + DE +GK+ +AK++ID+
Sbjct: 26 HLTDDS-FDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNP 84
Query: 90 DLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLV 132
A Y + +P L+ KNG+ +G +LK F+D +
Sbjct: 85 GTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 127
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein
disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum
vulgare var} PDB: 2vm2_A
Length = 118
Score = 100 bits (252), Expect = 9e-29
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 30 KVQDMNDFEKKVKNAST---PVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDID 86
+F+ + N VI+DF A+WC PC+ + P + G + L KVD+D
Sbjct: 10 ACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFL-KVDVD 68
Query: 87 ELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLV 132
EL D+A Y V A+P + +K+G+++D ++G D + + I L+
Sbjct: 69 ELKDVAEAYNVEAMPTFLFIKDGEKVDSVVG-GRKDDIHTKIVALM 113
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A
{Acetobacter aceti}
Length = 107
Score = 100 bits (251), Expect = 1e-28
Identities = 37/101 (36%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT 89
V D + F++ V AS V+VDF+A WC PCK + P L + E GKV +AKV+ID+
Sbjct: 6 AVSDSS-FDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNP 64
Query: 90 DLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDN 130
+ Y+V ++P L+ +++GK +D+ +G +LK+++++
Sbjct: 65 ETPNAYQVRSIPTLMLVRDGKVIDKKVGALPKSQLKAWVES 105
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm,
deoxyribonucleotide synthesis, golgi apparatus,
membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB:
3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Length = 109
Score = 100 bits (251), Expect = 1e-28
Identities = 35/100 (35%), Positives = 59/100 (59%), Gaps = 3/100 (3%)
Query: 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT 89
+ + ++F+ + V+VDF+ATWC PCK + P +E ++ + K+D+DEL
Sbjct: 10 QFKTASEFDSAIAQ-DKLVVVDFYATWCGPCKMIAPMIEKFSEQYP-QADFYKLDVDELG 67
Query: 90 DLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
D+A EVSA+P L+ KNGKE+ +++G + +K I
Sbjct: 68 DVAQKNEVSAMPTLLLFKNGKEVAKVVGA-NPAAIKQAIA 106
>2l57_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, PSI protein structure initiative; NMR
{Clostridium perfringens}
Length = 126
Score = 100 bits (251), Expect = 1e-28
Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 4/113 (3%)
Query: 27 TSFKVQDMND-FEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDI 85
Q +N + P I+ F C C + L V E +GK + +
Sbjct: 7 KQINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARL 66
Query: 86 DEL--TDLAMDYEVSAVPVLIAM-KNGKELDRLIGLQDIDKLKSFIDNLVEKQ 135
+E DLA Y+ + VP + + K G + GL + +++ +++L K+
Sbjct: 67 EEEKNIDLAYKYDANIVPTTVFLDKEGNKFYVHQGLMRKNNIETILNSLGVKE 119
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure
initiative, CESG, center for eukaryotic structural
genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Length = 124
Score = 100 bits (251), Expect = 1e-28
Identities = 36/107 (33%), Positives = 59/107 (55%), Gaps = 2/107 (1%)
Query: 23 SAVYTSFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAK 82
V V+ N+ +K + T V+VDF A+WC PC+ + P + ++ V+ K
Sbjct: 16 GQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-NVLFLK 74
Query: 83 VDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
VD DEL +A D+ + A+P + +K GK LD+++G D+L+S I
Sbjct: 75 VDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGA-KKDELQSTIA 120
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport,
redox- active center, transport, oxidoreductase; HET:
CME; 1.50A {Saccharomyces cerevisiae}
Length = 112
Score = 100 bits (250), Expect = 1e-28
Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Query: 30 KVQDMNDFEK--KVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMK-GKVVLAKVDID 86
++ D F +++ F +W PCK L EA+ +E V +D D
Sbjct: 4 EINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDAD 63
Query: 87 ELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVE 133
E ++++ +E+SAVP I + G L L G D + S +++
Sbjct: 64 ENSEISELFEISAVPYFIIIHKGTILKELSGA-DPKEYVSLLEDCKN 109
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure
initiative structural genomics of pathogenic protozoa
consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Length = 112
Score = 100 bits (250), Expect = 1e-28
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 31 VQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTD 90
V +F+ + + VIVDFFA WC PCK + P E K+V KVD+DE+++
Sbjct: 13 VTSQAEFDSIISQ-NELVIVDFFAEWCGPCKRIAPFYEECSKTYT-KMVFIKVDVDEVSE 70
Query: 91 LAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
+ ++++P KNG +D L+G + LK I+
Sbjct: 71 VTEKENITSMPTFKVYKNGSSVDTLLGA-NDSALKQLIE 108
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A
{Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A
2l59_A
Length = 121
Score = 100 bits (250), Expect = 2e-28
Identities = 36/105 (34%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Query: 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT 89
KV D + F V +++ PV+VDF+ATWC PCK + P LE + E + +AK+D+D
Sbjct: 16 KVTDAS-FATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNP 74
Query: 90 DLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEK 134
+ A +++V ++P LI K+G+ + R++G + L + ++V
Sbjct: 75 ETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVVPN 119
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural
genomics/proteomics initiative, RSGI; 1.82A {Thermus
thermophilus}
Length = 140
Score = 100 bits (251), Expect = 2e-28
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 36 DFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDY 95
F ++V + +VDFFA WC PC+ ++P LE + + G++ + KV++DE LA Y
Sbjct: 42 GFAQEVAG-APLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARY 100
Query: 96 EVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEKQ 135
V +VP L+ + G + +G L+ + +E +
Sbjct: 101 GVRSVPTLVLFRRGAPVATWVGASPRRVLEERLRPYLEGR 140
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP:
c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Length = 105
Score = 99.6 bits (249), Expect = 2e-28
Identities = 34/105 (32%), Positives = 61/105 (58%), Gaps = 2/105 (1%)
Query: 30 KVQDMND--FEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDE 87
+VQD+ND +++ V + PV+VDF+A WC PCK + P ++ + E GK+ + K++ DE
Sbjct: 1 EVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDE 60
Query: 88 LTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLV 132
+A Y + ++P ++ KNG+ + +IG L I+ +
Sbjct: 61 APGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYL 105
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative
splicing, FBP interacting repressor, RRM, electron
transport; 2.20A {Escherichia coli O157}
Length = 222
Score = 102 bits (257), Expect = 2e-28
Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 4/112 (3%)
Query: 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT 89
+ D + F+ V A ++VDF+A WC PCK + P L+ + DE +GK+ +AK++ID+
Sbjct: 16 HLTDDS-FDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 74
Query: 90 DLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLV---EKQSAV 138
A Y + +P L+ KNG+ +G +LK F+D + +S V
Sbjct: 75 GTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLAGSAMESTV 126
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.25A {Aeropyrum pernix}
Length = 135
Score = 100 bits (250), Expect = 2e-28
Identities = 19/120 (15%), Positives = 41/120 (34%), Gaps = 12/120 (10%)
Query: 22 GSAVYTSFKVQDMND--FEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVV 79
G AV ++ + F + ++ I+ ++ C C P+L E+ +V
Sbjct: 9 GLAVLEDGRLIYITPEEFRQLLQG---DAILAVYSKTCPHCHRDWPQLIQASKEVDVPIV 65
Query: 80 -------LAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLV 132
+ + ++ V P L+ K G+ +D+L+G +
Sbjct: 66 MFIWGSLIGERELSAARLEMNKAGVEGTPTLVFYKEGRIVDKLVGATPWSLKVEKAREIY 125
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Length = 106
Score = 99.3 bits (248), Expect = 3e-28
Identities = 42/103 (40%), Positives = 66/103 (64%), Gaps = 1/103 (0%)
Query: 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT 89
+V D N FE++V + PV+VDF+A WC PC+ + P +E + E +GKV + KV++DE
Sbjct: 5 EVTDEN-FEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENP 63
Query: 90 DLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLV 132
+ A Y + ++P L+ KNG+ +DRL+G Q + LK ID +
Sbjct: 64 NTAAQYGIRSIPTLLLFKNGQVVDRLVGAQPKEALKERIDKHL 106
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.19A {Yersinia pestis}
Length = 148
Score = 100 bits (250), Expect = 3e-28
Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 28 SFKVQDMND--FEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDI 85
+V + +K + P+++DF+A WC PC++ P E GKV KV+
Sbjct: 37 DGEVINATAETLDK-LLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNT 95
Query: 86 DELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEKQSA 137
+ L+ + + ++P ++ +NGK +D L G +++D + +
Sbjct: 96 EAEPALSTRFRIRSIPTIMLYRNGKMIDMLNGAVPKAPFDNWLDEQLSRDPN 147
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule,
electron transport; 1.51A {Streptomyces coelicolor}
Length = 112
Score = 98.9 bits (247), Expect = 4e-28
Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT 89
V D + FE+ V PV+VDF+A WC PC+ + P LEA+ E K+ + K++IDE
Sbjct: 9 HVTDDS-FEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENP 67
Query: 90 DLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLV 132
A Y V ++P L + G+ ++G + + +++ +
Sbjct: 68 GTAAKYGVMSIPTLNVYQGGEVAKTIVGAKPKAAIVRDLEDFI 110
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif,
endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Length = 122
Score = 99.0 bits (247), Expect = 5e-28
Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
Query: 36 DFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDY 95
F +KV T +VDF+A WC PC+ P E + +KGKV KVD
Sbjct: 12 TFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKA 71
Query: 96 EVSAVPVLIAMKNGKELDRL----IGLQDIDKLKSFIDNLVEK 134
+ A P + + + + I +D + + I +E
Sbjct: 72 GIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLET 114
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP:
c.47.1.1
Length = 113
Score = 98.6 bits (246), Expect = 5e-28
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 23 SAVYTSFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAK 82
V V + +K K + ++VDF A+WC PCK + P + + V K
Sbjct: 4 GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-NVTFLK 62
Query: 83 VDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
VD+DEL +A ++ V A+P I +K+GK +D+ +G D D L + +
Sbjct: 63 VDVDELKAVAEEWNVEAMPTFIFLKDGKLVDKTVG-ADKDGLPTLVA 108
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic
thioredoxin, oxidoreductase; NMR {Chlamydomonas
reinhardtii} SCOP: c.47.1.1
Length = 107
Score = 98.5 bits (246), Expect = 6e-28
Identities = 30/103 (29%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Query: 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT 89
V D F+ V +S PV+VDF+A WC PC+ + P ++ + E K K+ K++ DE
Sbjct: 5 AVNDDT-FKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESP 63
Query: 90 DLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLV 132
++A +Y + ++P ++ K GK+ + +IG + ++ +
Sbjct: 64 NVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYL 106
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport,
redox-active center; 1.50A {Bacillus subtilis} PDB:
2ipa_A 2gzy_A 2gzz_A
Length = 112
Score = 97.7 bits (244), Expect = 1e-27
Identities = 30/103 (29%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT 89
K D + F + + V+ DF+A WC P K + P LE + EM K+ + K+D+DE
Sbjct: 5 KATDQS-FSAET--SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQ 61
Query: 90 DLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLV 132
+ A Y V ++P L+ +K+G+ ++ +G + + L+ ++ +
Sbjct: 62 ETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNKHL 104
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm,
redox-active center, transport, oxidoreductase; 1.60A
{Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Length = 139
Score = 98.3 bits (245), Expect = 2e-27
Identities = 24/113 (21%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 30 KVQDMNDFEKKVKNAST---PVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDID 86
+ +++K+ AS V+ +F A WC P + + P + + ++ +D+D
Sbjct: 28 LITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYP-SLMFLVIDVD 86
Query: 87 ELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEKQSAVN 139
EL+D + +E+ A P +++G+++D+L+G + +L I +++ +
Sbjct: 87 ELSDFSASWEIKATPTFFFLRDGQQVDKLVGA-NKPELHKKITAILDSLPPSD 138
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis}
PDB: 3hyp_A
Length = 141
Score = 97.6 bits (243), Expect = 4e-27
Identities = 33/101 (32%), Positives = 56/101 (55%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD 94
N ++ P IVDF+A WC PCK + P LE + E GK+ + KV++D+ +LA D
Sbjct: 41 NHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARD 100
Query: 95 YEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEKQ 135
+ + ++P + + E +G ++LK +ID ++ KQ
Sbjct: 101 FGIQSIPTIWFVPMKGEPQVNMGALSKEQLKGYIDKVLLKQ 141
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase;
1.90A {Sulfolobus solfataricus}
Length = 109
Score = 96.3 bits (240), Expect = 4e-27
Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
Query: 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT 89
+ + N F++ V + V+VD +A WC PC P + V ++ KGK V ++++DE
Sbjct: 8 VLTEEN-FDE-VIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQ 65
Query: 90 DLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVE 133
+A Y V +P + NG+ +D L+G D D L+S ++ ++
Sbjct: 66 KIADKYSVLNIPTTLIFVNGQLVDSLVGAVDEDTLESTVNKYLK 109
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A
{Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB:
1rqm_A 1quw_A 1nw2_A
Length = 105
Score = 95.4 bits (238), Expect = 8e-27
Identities = 32/104 (30%), Positives = 61/104 (58%), Gaps = 2/104 (1%)
Query: 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT 89
+ D N F++ PV+VDF+A WC PC+ + P LE + KV +AK+++DE
Sbjct: 4 TLTDAN-FQQ-AIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENP 61
Query: 90 DLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVE 133
+ + + ++P LI K G+ + +LIG Q ++L++ + ++++
Sbjct: 62 ETTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQLEAQLADVLQ 105
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase,
structural genomics consortium, SGC; 2.00A {Plasmodium
falciparum}
Length = 133
Score = 95.6 bits (238), Expect = 1e-26
Identities = 15/105 (14%), Positives = 38/105 (36%), Gaps = 8/105 (7%)
Query: 30 KVQDMNDFEKKVKNAS-TPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDEL 88
++++ + + + +++ F A WC PC + + V L +D+D
Sbjct: 24 ELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQ--LNYYYVTLVDIDVDIH 81
Query: 89 TDLAMDYEVSAVPVLIAMKNGKE----LDRLIGLQDIDKLKSFID 129
L + + A+P N + + G + + ++
Sbjct: 82 PKLNDQHNIKALPTFEFYFNLNNEWVLVHTVEGA-NQNDIEKAFQ 125
>2yzu_A Thioredoxin; redox protein, electron transport, structural
genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Length = 109
Score = 95.1 bits (237), Expect = 1e-26
Identities = 36/104 (34%), Positives = 62/104 (59%), Gaps = 2/104 (1%)
Query: 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT 89
+V D N F++ V+VDF+A WC PC+ + P LE + E +GK+++AK+D+DE
Sbjct: 5 EVTDQN-FDE-TLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENP 62
Query: 90 DLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVE 133
AM Y V ++P +I K+G+ ++ L+G Q ++ I+ +
Sbjct: 63 KTAMRYRVMSIPTVILFKDGQPVEVLVGAQPKRNYQAKIEKHLP 106
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox
enzymology, oxidoreductase, redox-active center,
transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A
2o85_A 2o89_A 2o87_A
Length = 106
Score = 94.7 bits (236), Expect = 1e-26
Identities = 38/103 (36%), Positives = 62/103 (60%), Gaps = 3/103 (2%)
Query: 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT 89
KV D + F+ KV++ +VDF+AT C PCK + P LE + + +GK + K+D+DE
Sbjct: 7 KVTDAD-FDSKVESG--VQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENP 63
Query: 90 DLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLV 132
A YEV ++P LI K+G+ +D+++G Q + L +D +
Sbjct: 64 STAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 106
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi;
structural genomics, PSI, protein structure initiative;
2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB:
2gzp_A 2jzt_A
Length = 142
Score = 95.6 bits (238), Expect = 2e-26
Identities = 13/112 (11%), Positives = 41/112 (36%), Gaps = 2/112 (1%)
Query: 28 SFKVQDMNDFEKKVKNAST-PVIVDFFATWCNPCKTLTPRLEAVIDEMKG-KVVLAKVDI 85
++ + + + +K +++ + ++ E +A D+
Sbjct: 18 GWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADL 77
Query: 86 DELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEKQSA 137
++ + + V P + +GK L G+ +L + + ++V+ +A
Sbjct: 78 EQSEAIGDRFNVRRFPATLVFTDGKLRGALSGIHPWAELLTLMRSIVDTPAA 129
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP:
c.47.1.1
Length = 124
Score = 94.8 bits (236), Expect = 2e-26
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 11/119 (9%)
Query: 18 SLSVGSAVYTSFKVQDMND--FEKKVKNAS-TPVIVDFFATWCNPCKTLTPRLEAVIDEM 74
+L KV ++N F VK A PV++D F WC PCK + P+ E + +E
Sbjct: 7 ALGTQEMEAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEY 66
Query: 75 KGKVVLAKVDID-ELTDLAMDYEVSAVPVLIAMKNGKELDRLIG------LQDIDKLKS 126
+ L K+D + E LA + + VP +K + + G L+ I +S
Sbjct: 67 LDVIFL-KLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAIQAARS 124
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex,
iron-sulfur, electron transport; 1.65A {Spinacia
oleracea} PDB: 2pvo_C 1f9m_A
Length = 111
Score = 93.9 bits (234), Expect = 4e-26
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Query: 36 DFEKKVKNAST-PVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDID-ELTDLAM 93
F VK A PV++D F WC P K + P+ E + +E + L K+D + E LA
Sbjct: 14 TFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFL-KLDCNQENKTLAK 72
Query: 94 DYEVSAVPVLIAMKNGKELDRLIG------LQDIDKLKS 126
+ + VP +K + + G L+ I +S
Sbjct: 73 ELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAIQAARS 111
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB:
3hhv_A
Length = 104
Score = 90.8 bits (226), Expect = 6e-25
Identities = 30/99 (30%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 36 DFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDY 95
+F+ + +VDF+A WC PC L P +E + ++ +V K++ DE D+A Y
Sbjct: 8 NFDS-FLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYP-QVGFGKLNSDENPDIAARY 65
Query: 96 EVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEK 134
V ++P +I K+G+ +D +IG ++++ I NL+ +
Sbjct: 66 GVMSLPTVIFFKDGEPVDEIIGAVPREEIEIRIKNLLGE 104
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy,
IGE, conformational diversity, multispecficity,
redox-active center; 2.77A {Escherichia coli} SCOP:
c.47.1.1
Length = 123
Score = 90.6 bits (225), Expect = 1e-24
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 16/121 (13%)
Query: 28 SFKVQDMND--FEKKVKNASTPVIVDFFATWCNP--------------CKTLTPRLEAVI 71
S K+ + D F+ V A ++VDF+A WC P CK + P L+ +
Sbjct: 2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIA 61
Query: 72 DEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNL 131
DE +GK+ +AK++ID+ A Y + +P L+ KNG+ +G +LK F+D
Sbjct: 62 DEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDAN 121
Query: 132 V 132
+
Sbjct: 122 L 122
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31
protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 137
Score = 90.7 bits (225), Expect = 2e-24
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 10/112 (8%)
Query: 28 SFKVQDMND--FEKKV-KNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG-KVVLAKV 83
S ++ ND ++++ ++ IV+FFA W N C++ P + + + KV
Sbjct: 6 SGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKV 65
Query: 84 DIDELTDLAMDYEVSA------VPVLIAMKNGKELDRLIGLQDIDKLKSFID 129
D+ TD++ Y+VS +P LI + GKE R + + S+
Sbjct: 66 DVGRYTDVSTRYKVSTSPLTKQLPTLILFQGGKEAMRRPQIDKKGRAVSWTF 117
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2,
protein structure initiative; NMR {Bacteroides
thetaiotaomicron}
Length = 130
Score = 89.1 bits (221), Expect = 5e-24
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 19 LSVGSAVYTSFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRL---EAVIDEMK 75
+S+ A +F+ + K+ + + VD F TWC PCK L+ + V D
Sbjct: 1 MSLAQADGIAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFN 60
Query: 76 GKVVLAKVDID--ELTDLAMDYEVSAVPVLIAMK-NGKELDRLIGLQDIDKLKSFIDNLV 132
V K+D++ E +L Y V A P L+ + +G+ + RL+G +D +L + V
Sbjct: 61 RHFVNLKMDMEKGEGVELRKKYGVHAYPTLLFINSSGEVVYRLVGAEDAPELLKKVKLGV 120
Query: 133 EKQ 135
E +
Sbjct: 121 ESE 123
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell
cycle, mRNA processing, mRNA splicing, nucleus,
phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens}
PDB: 1xbs_A
Length = 149
Score = 87.7 bits (217), Expect = 3e-23
Identities = 15/99 (15%), Positives = 37/99 (37%), Gaps = 1/99 (1%)
Query: 36 DFEKKVKNAST-PVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD 94
+ ++ +K+ + +++ F C L L ++ + VD+D+
Sbjct: 13 EVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQY 72
Query: 95 YEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVE 133
+++S +P + NG+ + G D K +
Sbjct: 73 FDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGSFKTKQD 111
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC
structure funded by NIH, protein structure initiative,
PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Length = 85
Score = 83.5 bits (207), Expect = 2e-22
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 45 STPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLI 104
S I F + C C +E V +EM V + +++ E AM+Y + AVP ++
Sbjct: 2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIV 61
Query: 105 AMKNGKELDRLIGLQDIDKLKSFID 129
+ + IG + L I
Sbjct: 62 INGDVE----FIGAPTKEALVEAIK 82
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin
like domain, redox, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 133
Score = 83.2 bits (206), Expect = 9e-22
Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 36 DFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMK----GKVVLAKVDIDELTDL 91
F+K V ++ +V+F+A WC CK L P A E+K GKV LA VD L
Sbjct: 16 SFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVL 75
Query: 92 AMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEKQ 135
A Y + P + + G+ G + + S +L
Sbjct: 76 ASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSDN 119
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 85.2 bits (210), Expect = 2e-20
Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 4/109 (3%)
Query: 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT 89
F +KV T +VDF+A W P + P E + +KGKV KVD
Sbjct: 660 IDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYP 719
Query: 90 DLAMDYEVSAVPVLIAMKNGK----ELDRLIGLQDIDKLKSFIDNLVEK 134
+ A P + + + + I +D + + I +E
Sbjct: 720 QTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLET 768
Score = 75.2 bits (184), Expect = 7e-17
Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
Query: 42 KNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVP 101
+ P +VDFFA W P + L P L + G++ + +D L Y + A P
Sbjct: 452 ASDKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDCTIHEGLCNMYNIQAYP 511
Query: 102 VLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEK 134
+ + G +++ FI++L
Sbjct: 512 TTVVFNQSSIHE-YEGHHSAEQILEFIEDLRNP 543
Score = 71.3 bits (174), Expect = 1e-15
Identities = 17/101 (16%), Positives = 35/101 (34%)
Query: 34 MNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAM 93
N+ V+F++ + L P E+ G + + V+ + L
Sbjct: 122 ERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCR 181
Query: 94 DYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEK 134
V++ P L ++G + G + + L +F V
Sbjct: 182 MKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRS 222
Score = 66.7 bits (162), Expect = 5e-14
Identities = 20/116 (17%), Positives = 40/116 (34%), Gaps = 7/116 (6%)
Query: 33 DMNDFEKKVKN--ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTD 90
+ F + VK +VDF++ W +P + L P + + + G + + VD +
Sbjct: 549 TPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLINVGSVDCGQYHS 608
Query: 91 LAMDYEVSAVPVLIAMKNGKE-----LDRLIGLQDIDKLKSFIDNLVEKQSAVNSP 141
V P + +D L+S+ + + S +P
Sbjct: 609 FCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFLPQASIDLTP 664
Score = 47.4 bits (112), Expect = 3e-07
Identities = 14/105 (13%), Positives = 30/105 (28%), Gaps = 3/105 (2%)
Query: 36 DFEKKVKNASTPVIVDFFATWCNPCKTLTPRLE--AVIDEMKGKVVLAKVDIDELTDLAM 93
+F ++ + V + T+C+ + + + G V + VD D L
Sbjct: 231 NFVNAIET-AFAAGVGWLITFCSKGEDCLTSQTRLRLSGMLDGLVNVGWVDCDAQDSLCK 289
Query: 94 DYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEKQSAV 138
+ +A DR + +E +
Sbjct: 290 SLDTTASTTAYFPPGATLNDREKSSVLFLNSLDAKEIYMEIIHNL 334
Score = 37.8 bits (87), Expect = 6e-04
Identities = 13/100 (13%), Positives = 35/100 (35%), Gaps = 4/100 (4%)
Query: 31 VQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG-KVVLAKVDIDELT 89
+ ++ + + + A +V F + P L+ + +K + + + D
Sbjct: 337 FELLSANQLEDRLAHHRWLVFFH--FGKNENANDPELKKLKTLLKNEHIQVVRFDCSSAP 394
Query: 90 DLAMDYEVSA-VPVLIAMKNGKELDRLIGLQDIDKLKSFI 128
+ D V + + KE + G + + + +F
Sbjct: 395 GICSDLYVFQPSLAVFKGQGTKEYEIHHGKKILYDILAFA 434
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing
protein 7, endoplasmic reticulum, redox-active center,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 130
Score = 80.1 bits (198), Expect = 2e-20
Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD 94
++F ++V + +V+F+A WC C+ LTP + +K V + V+ D+ L
Sbjct: 25 SNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQ 84
Query: 95 YEVSAVPVLIAMKNGKEL-DRLIGLQDIDKLKSFIDNLV 132
Y V P + K + G + + + + +
Sbjct: 85 YGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSAL 123
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein,
thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 135
Score = 76.0 bits (187), Expect = 8e-19
Identities = 16/99 (16%), Positives = 39/99 (39%), Gaps = 6/99 (6%)
Query: 35 NDFEKKVKNAS--TPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLA 92
N + +V NA V++ + + C + L + + + K ++ +
Sbjct: 18 NQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKF-PETKFVKAIVNSCIE-- 74
Query: 93 MDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNL 131
Y + +P + KNG+ + IG+ + + ++ L
Sbjct: 75 -HYHDNCLPTIFVYKNGQIEGKFIGIIECGGINLKLEEL 112
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.47.1.1
Length = 85
Score = 74.3 bits (183), Expect = 8e-19
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMK 107
I F + C C ++ E K+ + K+DI + A++Y + AVP +
Sbjct: 4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI-- 61
Query: 108 NGKELDRLIGLQDIDKLKSFIDNLVE 133
NG R +G ++L I++ +E
Sbjct: 62 NGV--VRFVGAPSREELFEAINDEME 85
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich,
unknown function; 2.70A {Homo sapiens}
Length = 118
Score = 74.8 bits (184), Expect = 1e-18
Identities = 17/99 (17%), Positives = 38/99 (38%), Gaps = 6/99 (6%)
Query: 35 NDFEKKVKNAS--TPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLA 92
N + +V NA VI+ + + C + L + + + K ++
Sbjct: 11 NQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKF-PETKFVKAIVNSCIQ-- 67
Query: 93 MDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNL 131
Y + +P + KNG+ + IG+ + + ++ L
Sbjct: 68 -HYHDNCLPTIFVYKNGQIEAKFIGIIECGGINLKLEEL 105
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold,
isomerase; 2.00A {Homo sapiens} PDB: 2diz_A
Length = 111
Score = 74.6 bits (184), Expect = 1e-18
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMK---GKVVLAKVDIDELTDL 91
N+F+ + + F+A WC CKTL P E + + V +A+VD ++
Sbjct: 13 NNFDDTIAE--GITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNI 70
Query: 92 AMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDN 130
Y V P L+ + GK++ G +D+D L F+ +
Sbjct: 71 CSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFVLS 109
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum,
glycoprotein, immunoglobulin domain, microsome, protein
disulfide isomerase, thioredoxin-like FO like domain;
HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Length = 481
Score = 79.1 bits (194), Expect = 2e-18
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 33 DMNDFEKKVKN--ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTD 90
++FE ++ + ++ ++V+FFA WC K L P EA +KG V LAKVD T+
Sbjct: 7 TDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTN 66
Query: 91 LAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEKQS 136
Y VS P L ++G+E G + D + S + S
Sbjct: 67 TCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAGPAS 112
Score = 62.6 bits (151), Expect = 2e-12
Identities = 26/112 (23%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 31 VQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG--KVVLAKVDIDEL 88
V +F++ V N + V+++F+A WC CK L P+ + + +++ +V+AK+D
Sbjct: 356 VVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATA- 414
Query: 89 TDLAMDYEVSAVPVLIAMKNGKELDRLI--GLQDIDKLKSFIDNLVEKQSAV 138
D+ YEV P + K+L+ G +++ S++ +
Sbjct: 415 NDVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQREATNPPVI 466
Score = 30.6 bits (68), Expect = 0.13
Identities = 14/103 (13%), Positives = 30/103 (29%), Gaps = 13/103 (12%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD 94
+ KK + IV FF + ++ A +++ L +
Sbjct: 118 EEEFKKFISDKDASIVGFFDDSFSEAH---SEFLKAASNLRDNYRFAHTNVESLVNE--- 171
Query: 95 YEVSAVPVLIAMK-------NGKELDRLIGLQDIDKLKSFIDN 130
Y+ + +++ K + K+K FI
Sbjct: 172 YDDNGEGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQE 214
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 126
Score = 74.3 bits (183), Expect = 3e-18
Identities = 23/101 (22%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG-KVVLAKVDIDELTDLAM 93
++ + ++ +++F+A WC C+ L P E+ + + +V +AKVD+ E L+
Sbjct: 15 ENWRELLEG---DWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSG 71
Query: 94 DYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEK 134
+ ++A+P + K+G+ G + +FI + K
Sbjct: 72 RFIINALPTIYHCKDGEFRR-YQGPRTKKDFINFISDKEWK 111
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like,
C-terminal domain, reduced form at PH7, oxidoreductase;
0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A
2fwf_A 2fwg_A 1vrs_D 1uc7_A
Length = 134
Score = 72.9 bits (179), Expect = 9e-18
Identities = 20/113 (17%), Positives = 45/113 (39%), Gaps = 12/113 (10%)
Query: 30 KVQDMNDFEKKVKNAS-TPVIVDFFATWCNPCKTLTPR---LEAVIDEMKGKVVLAKVDI 85
+++ +++ + + A PV++D +A WC CK V + VL + ++
Sbjct: 15 QIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-DTVLLQANV 73
Query: 86 ----DELTDLAMDYEVSAVPVLIAM-KNGKELD--RLIGLQDIDKLKSFIDNL 131
+ L V +P ++ G+E R+ G D + + + +
Sbjct: 74 TANDAQDVALLKHLNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRDR 126
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide
bond, endoplasmic reticulum isomerase, redox-active
center; 1.95A {Homo sapiens} PDB: 2dj2_A
Length = 241
Score = 74.1 bits (182), Expect = 3e-17
Identities = 25/105 (23%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGK---VVLAKVDIDELTDL 91
+F+ V + V+++F+A WC CK P E + + +K K + +AK+D + L
Sbjct: 23 ANFDNFVAD-KDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVL 81
Query: 92 AMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEKQS 136
A ++VS P + +K G+ +D G + +++ + + + +
Sbjct: 82 ASRFDVSGYPTIKILKKGQAVD-YEGSRTQEEIVAKVREVSQPDW 125
Score = 67.6 bits (165), Expect = 1e-14
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 9/122 (7%)
Query: 10 INKCIPSRSLSVGSAVYTSFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEA 69
+ + V +F++ V +A ++V+F+A WC CK L P E
Sbjct: 117 VREVSQPDWTPPPEVT----LVLTKENFDEVVNDAD-IILVEFYAPWCGHCKKLAPEYEK 171
Query: 70 VIDEMKGK---VVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKS 126
E+ + + LAKVD TDLA ++VS P L + G+ D G ++ +
Sbjct: 172 AAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKGRPYD-YNGPREKYGIVD 230
Query: 127 FI 128
++
Sbjct: 231 YM 232
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich,
structural genomics, PSI, protein structure initiative;
HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP:
c.47.1.1
Length = 118
Score = 70.8 bits (173), Expect = 5e-17
Identities = 16/107 (14%), Positives = 34/107 (31%), Gaps = 5/107 (4%)
Query: 26 YTSFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKV----VLA 81
+V + ++ + T C C+ L V+ E K +
Sbjct: 11 IKDLEVTTVVRAQEALDKKET-ATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEE 69
Query: 82 KVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFI 128
+++L Y + VP + + +G+ R ++K F
Sbjct: 70 PSQLNDLQAFRSRYGIPTVPGFVHITDGQINVRCDSSMSAQEIKDFA 116
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 140
Score = 70.5 bits (173), Expect = 1e-16
Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG---KVVLAKVDIDELTDL 91
+F+ V + V+++F+A WC CK P E + +K + +AK+D + L
Sbjct: 25 GNFDNFVAD-KDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASML 83
Query: 92 AMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEKQSA 137
A ++VS P + +K G+ +D G + +++ + + + +
Sbjct: 84 ASKFDVSGYPTIKILKKGQAVD-YDGSRTQEEIVAKVREVSQPDWT 128
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 133
Score = 68.9 bits (169), Expect = 4e-16
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG--KVVLAKVDIDELTDLA 92
F+ V + V+++F+A WC CK L P ++ + KG +V+AK+D
Sbjct: 15 KTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITN 74
Query: 93 MDYEVSAVPVLIAMKNGKELDRLI---GLQDIDKLKSFIDNLVEKQSAV 138
Y+V P + +G + + + G +D++ L FID K+S
Sbjct: 75 DQYKVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKRSRT 123
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC,
endoplasmic reticulum, glycoprotein, redox-active
center; 2.00A {Saccharomyces cerevisiae}
Length = 298
Score = 70.6 bits (172), Expect = 1e-15
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDID--ELTDLA 92
F+K + N + +V+F+A WC CK L+ + G V +A V+ D + L
Sbjct: 25 KSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALC 84
Query: 93 MDYEVSAVPVLIAMKNGKE 111
Y+V+ P L+ + K
Sbjct: 85 AKYDVNGFPTLMVFRPPKI 103
Score = 26.3 bits (57), Expect = 4.1
Identities = 7/40 (17%), Positives = 11/40 (27%), Gaps = 3/40 (7%)
Query: 50 VDFFATWCNPCKTL---TPRLEAVIDEMKGKVVLAKVDID 86
DF++ K L P E + K +
Sbjct: 190 FDFYSISNKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQ 229
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines
missing, unknown funct; 1.50A {Trypanosoma cruzi}
Length = 127
Score = 67.0 bits (164), Expect = 2e-15
Identities = 15/109 (13%), Positives = 35/109 (32%), Gaps = 11/109 (10%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG-----KVVLAKVDIDELT 89
F+ V + V V ++ W + + V A++D ++
Sbjct: 23 ETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYP 82
Query: 90 DLAMDYEVSAVPVLIAMKNGKELDRLI--GLQDIDKLKSFIDNLVEKQS 136
D+ VS P + + + G + + + SF+ + +
Sbjct: 83 DVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFV----FQNT 127
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A
{Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB:
1j08_A
Length = 226
Score = 68.6 bits (167), Expect = 4e-15
Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 5/102 (4%)
Query: 36 DFEKKVKNASTPV-IVDFFATWCNPCKTLTPRLEAV----IDEMKGKVVLAKVDIDELTD 90
+ ++ ++N V I+ F C C KGK++ V+ E +
Sbjct: 124 ETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPE 183
Query: 91 LAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLV 132
A Y V AVP ++ NG++ G + + +
Sbjct: 184 WADQYNVMAVPKIVIQVNGEDRVEFEGAYPEKMFLEKLLSAL 225
>1mek_A Protein disulfide isomerase; electron transport, redox-active
center, endoplasmic reticulum; NMR {Homo sapiens} SCOP:
c.47.1.2
Length = 120
Score = 65.8 bits (161), Expect = 4e-15
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG---KVVLAKVDIDELTDL 91
++F + + ++V+F+A WC CK L P ++K ++ LAKVD E +DL
Sbjct: 15 SNFAEALAAHK-YLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDL 73
Query: 92 AMDYEVSAVPVLIAMKNGKELDRL--IGLQDIDKLKSFIDN 130
A Y V P + +NG ++ D + +++
Sbjct: 74 AQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKK 114
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB:
1b9y_C 1b9x_C
Length = 245
Score = 68.2 bits (166), Expect = 6e-15
Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 4/103 (3%)
Query: 31 VQDMNDFEKKVKNAS--TPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDEL 88
++ F + ++ T ++V + C L L + E V K+
Sbjct: 117 LESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEY-PMVKFCKIKASN- 174
Query: 89 TDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNL 131
T + +P L+ K G+ L I + + + F ++
Sbjct: 175 TGAGDRFSSDVLPTLLVYKGGELLSNFISVTEQLAEEFFTGDV 217
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET:
MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB:
1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A
3c73_A
Length = 151
Score = 65.4 bits (160), Expect = 1e-14
Identities = 27/138 (19%), Positives = 56/138 (40%), Gaps = 33/138 (23%)
Query: 29 FKVQDMNDFEKKVKNAS---TPVIVDFFATWCNPCKTLTPRLEAVIDEMKGK--VVLAKV 83
F ++D N K+++ + V ++F+ TWC PCK P + K + ++A V
Sbjct: 9 FVLEDTNG--KRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVA-V 65
Query: 84 DIDE------------------LTD----LAMDYEVSAVP--VLIAMKNGKELDRLIGLQ 119
++ E + D + Y+VS +P LI GK + + G
Sbjct: 66 NVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLIN-PEGKVVKVVTGTM 124
Query: 120 DIDKLKSFIDNLVEKQSA 137
+ +++ + +++
Sbjct: 125 TESMIHDYMNLIKPGETS 142
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP:
c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Length = 504
Score = 67.2 bits (163), Expect = 4e-14
Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Query: 33 DMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGK-VVLAKVDIDELTDL 91
+ F + +++ V+ +FFA WC CK + P + + K + LA++D E DL
Sbjct: 20 ATDSFNEYIQSHDL-VLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDL 78
Query: 92 AMDYEVSAVPVLIAMKNGKELDRL--IGLQDIDKLKSFIDNLVEK 134
M++ + P L KN + + G + + + F+ +
Sbjct: 79 CMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQP 123
Score = 58.7 bits (141), Expect = 3e-11
Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 7/106 (6%)
Query: 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMK---GKVVLAKVDID 86
+ ++ V + V+V ++A WC CK L P + + D V++AK+D
Sbjct: 361 FQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHT 420
Query: 87 ELTDLAMDYEVSAVPVLIAMKNGKELDRLI--GLQDIDKLKSFIDN 130
E + + P ++ GK+ + ++ G + +D L FI
Sbjct: 421 E--NDVRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKE 464
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin,
thioredoxin fold, oxidoreductase, reductive methylation;
HET: MLY; 2.05A {Homo sapiens}
Length = 244
Score = 65.8 bits (160), Expect = 4e-14
Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 9/116 (7%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG---KVVLAKVDIDELTD- 90
+ V + + V+FFA+WC C P A+ +++K + LA +D E T+
Sbjct: 20 DTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNS 79
Query: 91 -LAMDYEVSAVPVLI----AMKNGKELDRLIGLQDIDKLKSFIDNLVEKQSAVNSP 141
+ D+ + P + NG + D+ L+ + + +E P
Sbjct: 80 AVCRDFNIPGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRERLIDALESHHDTWPP 135
Score = 45.4 bits (107), Expect = 1e-06
Identities = 13/123 (10%), Positives = 35/123 (28%), Gaps = 7/123 (5%)
Query: 10 INKCIPSRSLSVGSAVYTSFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEA 69
+ + S + A +N + + F + + L
Sbjct: 122 LIDALESHHDTWPPACPPLEPAXLEEIDGFFARNNEEYLALIFEXGGSYLAREVALDL-- 179
Query: 70 VIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAM-KNGKELDRLIGLQDIDKLKSFI 128
V + +V E ++ + V+ P + +NG + ++ +++
Sbjct: 180 ---SQHKGVAVRRVLNTE-ANVVRKFGVTDFPSCYLLFRNGSVSRVPVLMESRSFYTAYL 235
Query: 129 DNL 131
L
Sbjct: 236 QRL 238
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone,
endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Length = 382
Score = 66.9 bits (163), Expect = 4e-14
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 10/113 (8%)
Query: 30 KVQDMND--FEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMK------GKVVLA 81
++ ++ ++ + NA +V+F+A WC + L P E D +K +VV A
Sbjct: 6 EITSLDTENIDEILNNAD-VALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFA 64
Query: 82 KVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLI-GLQDIDKLKSFIDNLVE 133
+VD D+ +D+A Y +S P L +NG + R G + + L +I
Sbjct: 65 RVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQKS 117
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2,
protein struct initiative; NMR {Neisseria meningitidis
serogroup B}
Length = 153
Score = 63.9 bits (156), Expect = 5e-14
Identities = 31/138 (22%), Positives = 47/138 (34%), Gaps = 32/138 (23%)
Query: 29 FKVQDMNDFEKKVKNAS---TPVIVDFFATWCNPCKTLTPRLEAVIDEMKGK--VVLA-- 81
F + D++ K V NA +++F+ C C + P++ ++ K K VLA
Sbjct: 11 FSLPDLHG--KTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVA 68
Query: 82 --------------------KVDIDELTDLAMDYEVSAVP--VLIAMKNGKELDRLIGLQ 119
V D + + P VLI K G+ L +G
Sbjct: 69 QPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQVYPTSVLIG-KKGEILKTYVGEP 127
Query: 120 DIDKLKSFIDNLVEKQSA 137
D KL ID A
Sbjct: 128 DFGKLYQEIDTAWRNSDA 145
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural
genomics, PSI-2, protein structure initiative; 1.77A
{Geobacter metallireducens gs-15}
Length = 158
Score = 63.5 bits (155), Expect = 9e-14
Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 33/132 (25%)
Query: 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGK--VVLAKVDIDE 87
+ + + + K+ V+V+F+A+WC C+ P ++ ++ VVLA V++++
Sbjct: 32 ENKSLAQYRGKI------VLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLA-VNVEK 84
Query: 88 ---------------LTD----LAMDYEVSAVP--VLIAMKNGKELDRLIGLQDID--KL 124
L+D + Y + +P ++ + G R+ G + D K+
Sbjct: 85 RFPEKYRRAPVSFNFLSDATGQVQQRYGANRLPDTFIVD-RKGIIRQRVTGGIEWDAPKV 143
Query: 125 KSFIDNLVEKQS 136
S++ +L
Sbjct: 144 VSYLKSLEGHHH 155
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus
musculus} PDB: 3t59_A*
Length = 519
Score = 65.7 bits (159), Expect = 1e-13
Identities = 20/118 (16%), Positives = 46/118 (38%), Gaps = 9/118 (7%)
Query: 33 DMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG---KVVLAKVDIDELT 89
D + V +S+ V+FFA+WC P + + +++K + LA +D E T
Sbjct: 18 DADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEET 77
Query: 90 D--LAMDYEVSAVPVLIAMKNG----KELDRLIGLQDIDKLKSFIDNLVEKQSAVNSP 141
+ + ++ ++ P + + ++ L+ + + +E P
Sbjct: 78 NSAVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHRDTWPP 135
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI,
structural genomics, protein initiative; 2.45A
{Geobacter metallireducens gs-15}
Length = 154
Score = 62.7 bits (153), Expect = 1e-13
Identities = 31/136 (22%), Positives = 58/136 (42%), Gaps = 35/136 (25%)
Query: 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGK--VVLA------ 81
+V ++D + +V VIV+F+ATWC PC+ P + + M GK +L
Sbjct: 19 EVVKLSDLKGQV------VIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEG 72
Query: 82 ----------------KVDIDELTDLAMDYEVSAVP--VLIAMKNGKELDRLIGLQDID- 122
V +D + Y + VP +I ++G L +++G + D
Sbjct: 73 GKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTGVPETFVID-RHGVILKKVVGAMEWDH 131
Query: 123 -KLKSFIDNLVEKQSA 137
++ +F++N + K
Sbjct: 132 PEVIAFLNNELSKARE 147
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II,
structural genomics, protein structure initiative; 1.66A
{Chlorobaculum tepidum}
Length = 165
Score = 62.8 bits (153), Expect = 2e-13
Identities = 21/143 (14%), Positives = 45/143 (31%), Gaps = 39/143 (27%)
Query: 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGK--VVLAKVDIDE 87
K + K IV+FFATWC PC++ P + V + + + ++E
Sbjct: 25 KPFSSASLKGKA------YIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVG-IAVNE 77
Query: 88 ---------------------------LTDLAMDYEVSAVP--VLIAMKNGKELDRLIGL 118
+ +D ++ +P +I +G ++G
Sbjct: 78 QLPNVKNYMKTQGIIYPVMMATPELIRAFNGYIDGGITGIPTSFVID-ASGNVSGVIVGP 136
Query: 119 QDIDKLKSFIDNLVEKQSAVNSP 141
+ + + ++A
Sbjct: 137 RSKADFDRIVKMALGAKAATKEG 159
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like
fold, RESA-like fold, dithiol, STOA, redox-active
center; 2.50A {Bacillus subtilis}
Length = 145
Score = 62.0 bits (151), Expect = 3e-13
Identities = 21/129 (16%), Positives = 47/129 (36%), Gaps = 29/129 (22%)
Query: 29 FKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGK--VVLA----- 81
F ++ + + + N I+ F+ +WC PCK P+ ++ D ++
Sbjct: 18 FLMKTIEGEDISIPNKGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVN 77
Query: 82 -------------------KVDIDELTDLAMDYEVSAVP--VLIAMKNGKELDRLIGLQD 120
+ +D +L +Y + +P L+ + G+ IG
Sbjct: 78 SEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYHIITIPTSFLLN-EKGEIEKTKIGPMT 136
Query: 121 IDKLKSFID 129
++LK + +
Sbjct: 137 AEQLKEWTE 145
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 63.0 bits (153), Expect = 3e-13
Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 1/98 (1%)
Query: 36 DFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDY 95
+F+ V N+ V+F++ C+ C L P E+ G + + V+ + L
Sbjct: 106 EFDAAV-NSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMK 164
Query: 96 EVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVE 133
V++ P L ++G + G + + L +F V
Sbjct: 165 GVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVR 202
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics
research consortium, oxidoreductase; NMR {Thermus
thermophilus}
Length = 130
Score = 61.2 bits (149), Expect = 3e-13
Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 9/116 (7%)
Query: 28 SFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTL---TPRLEAVIDEMKGKVVLAKVD 84
S + + + V+V F + C C+ + V ++ + V+A V
Sbjct: 2 SLRWYPYPEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVS 61
Query: 85 IDELTD--LAMDYEVSAVPVLIAM----KNGKELDRLIGLQDIDKLKSFIDNLVEK 134
+D LA Y V P + + +E+ RL G + + + + K
Sbjct: 62 VDTPEGQELARRYRVPGTPTFVFLVPKAGAWEEVGRLFGSRPRAEFLKELRQVCVK 117
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase,
PSI-II, structural genomics, protein structure
initiative; 2.09A {Chlorobium tepidum tls}
Length = 152
Score = 60.7 bits (148), Expect = 6e-13
Identities = 36/154 (23%), Positives = 54/154 (35%), Gaps = 43/154 (27%)
Query: 18 SLSVGSAVYTSFKVQDMN------DFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVI 71
SL G F + D V V +DF+A+WC PC+ P + +
Sbjct: 2 SLDKGDKA-PDFALPGKTGVVKLSDKTGSV------VYLDFWASWCGPCRQSFPWMNQMQ 54
Query: 72 DEMKGK--VVLAKVDIDE------------------LTDL----AMDYEVSAVP--VLIA 105
+ K K V+A V++D D Y V +P LI
Sbjct: 55 AKYKAKGFQVVA-VNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKGMPTSFLID 113
Query: 106 MKNGKELDRLIGLQDIDK--LKSFIDNLVEKQSA 137
+NGK L + +G + DK L+ I +
Sbjct: 114 -RNGKVLLQHVGFRPADKEALEQQILAALGGNEG 146
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics,
unknown function, thioredoxin-like; NMR {Bacteroides
vulgatus}
Length = 152
Score = 60.8 bits (148), Expect = 8e-13
Identities = 28/153 (18%), Positives = 55/153 (35%), Gaps = 42/153 (27%)
Query: 18 SLSVGSAVYTSFKVQDMN-------DFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAV 70
SL G+ SF D+N D + K + +D +ATWC PC+ P L+ +
Sbjct: 2 SLRSGNPSAASFSYPDINGKTVSLADLKGKY------IYIDVWATWCGPCRGELPALKEL 55
Query: 71 IDEMKGK--VVLAKVDIDE-------------------LTD----LAMDYEVSAVP--VL 103
++ GK ++ + D+ Y ++ +P +L
Sbjct: 56 EEKYAGKDIHFVS-LSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLINGIPRFIL 114
Query: 104 IAMKNGKELDRLIGLQDIDKLKSFIDNLVEKQS 136
+ ++GK + + K + L+ +
Sbjct: 115 LD-RDGKIISANMTRPSDPKTAEKFNELLGLEG 146
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform;
glycoprotein, calcium-binding, muscle protein, metal
binding protein; 2.40A {Canis lupus familiaris} PDB:
2vaf_A
Length = 350
Score = 62.8 bits (152), Expect = 1e-12
Identities = 17/114 (14%), Positives = 40/114 (35%), Gaps = 13/114 (11%)
Query: 30 KVQDMND--FEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMK--------GKVV 79
+V + + F++ +K V+ ++ + K + + ++ +
Sbjct: 12 RVVSLTEKNFKQVLKK--YDVLCLYYHESVSSDKVAQKQFQLKEIVLELVAQVLEHKDIG 69
Query: 80 LAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVE 133
VD + LA L +K + ++ G D L F+ +L+E
Sbjct: 70 FVMVDAKKEAKLAKKLGFDEEGSLYVLKGDRTIEF-DGEFAADVLVEFLLDLIE 122
Score = 33.5 bits (76), Expect = 0.013
Identities = 8/100 (8%), Positives = 24/100 (24%), Gaps = 7/100 (7%)
Query: 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT 89
+ + + + ++ FF + E + + +
Sbjct: 127 IINSKLEVQAFERIEDQIKLIGFFK---SEESEYYKAFEEAAEHFQPYIKFFATFDKG-- 181
Query: 90 DLAMDYEVSAVPVLIAMKNGKE-LDRLIGLQDIDKLKSFI 128
+A + V E + ++L F+
Sbjct: 182 -VAKKLSLKMNEVDFYEPFMDEPIAIPDKPYTEEELVEFV 220
Score = 30.0 bits (67), Expect = 0.23
Identities = 15/110 (13%), Positives = 33/110 (30%), Gaps = 16/110 (14%)
Query: 37 FEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDE--------- 87
+E + IV F L+ V + L+ V ID
Sbjct: 240 WEDDLNGI---HIVAFAERSDPDGYEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVAY 296
Query: 88 -LTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDI---DKLKSFIDNLVE 133
+D + V+ + D+ ++L+ +I++++
Sbjct: 297 WEKTFKIDLFKPQIGVVNVTDADSVWMEIPDDDDLPTAEELEDWIEDVLS 346
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold,
sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A
{Trypanosoma brucei} PDB: 3qd9_A*
Length = 470
Score = 62.3 bits (150), Expect = 2e-12
Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 9/85 (10%)
Query: 35 NDFEKKVKNAS-TPVIVDFFATWCNPCKTLTPRLEAVIDEMKGK--------VVLAKVDI 85
+DF + + A P IV F+ C C+ +K + A V+
Sbjct: 31 DDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNC 90
Query: 86 DELTDLAMDYEVSAVPVLIAMKNGK 110
DL Y+++ VP L
Sbjct: 91 ASEVDLCRKYDINFVPRLFFFYPRD 115
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola
insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Length = 121
Score = 58.9 bits (143), Expect = 2e-12
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 10/110 (9%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAV-----IDEMKGKVVLAKVDIDELT 89
++ + V + + V+++F+A WC CK L P+ E + E K +VV+AKVD
Sbjct: 15 KNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND 74
Query: 90 DLAMDYEVSAVPVLIAMKNGKELDRLI--GLQDIDKLKSFIDNLVEKQSA 137
E+ P + G + + G + ++ L FI + ++A
Sbjct: 75 VP---DEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKYKAA 121
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Length = 217
Score = 60.8 bits (147), Expect = 2e-12
Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Query: 31 VQDMNDFEKKVKNAS--TPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDEL 88
++ F + ++ T ++V+ + C L LE + E V K+
Sbjct: 104 LETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEY-PMVKFCKIRASN- 161
Query: 89 TDLAMDYEVSAVPVLIAMKNGKELDRLIGLQD 120
T + +P L+ K G+ + I + +
Sbjct: 162 TGAGDRFSSDVLPTLLVYKGGELISNFISVAE 193
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein
structure initiative; 2.00A {Neisseria meningitidis
serogroup B}
Length = 151
Score = 58.6 bits (142), Expect = 6e-12
Identities = 20/135 (14%), Positives = 37/135 (27%), Gaps = 38/135 (28%)
Query: 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGK--VVLAKVDIDE 87
Q + + V IV+ +ATWC PC+ P + K ++ + +D
Sbjct: 15 TPQSLQSLKAPV------RIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVG-IALDT 67
Query: 88 LTDL--------------------------AMDYEVSAVP--VLIAMKNGKELDRLIGLQ 119
++ V +P V+ A + G
Sbjct: 68 SDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNTVGVLPFTVVEA-PKCGYRQTITGEV 126
Query: 120 DIDKLKSFIDNLVEK 134
+ L + K
Sbjct: 127 NEKSLTDAVKLAHSK 141
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB;
reduced, thiol-disulfide exchange, oxidoreductase; 1.60A
{Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Length = 164
Score = 57.8 bits (140), Expect = 1e-11
Identities = 20/144 (13%), Positives = 44/144 (30%), Gaps = 37/144 (25%)
Query: 29 FKVQDMNDFEKKVKNAS---TPVIVDFFATWCNPCKTLTPRLEAVIDEMKGK--VVLA-- 81
++ ++ + P ++ F+A+WC C + + E + K ++
Sbjct: 21 STMKTADN--RPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVA 78
Query: 82 -------------------------KVDIDELTDLAMDYEVSAVP--VLIAMKNGKELDR 114
V D +A + +S P LI K+G
Sbjct: 79 SPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQNLNISVYPSWALIG-KDGDVQRI 137
Query: 115 LIGLQDIDKLKSFIDNLVEKQSAV 138
+ G + + + I N ++
Sbjct: 138 VKGSINEAQALALIRNPNADLGSL 161
>4evm_A Thioredoxin family protein; structural genomics, niaid, national
institute of allergy AN infectious diseases; 1.51A
{Streptococcus pneumoniae}
Length = 138
Score = 56.9 bits (138), Expect = 2e-11
Identities = 25/115 (21%), Positives = 36/115 (31%), Gaps = 31/115 (26%)
Query: 47 PVIVDFFATWCNPCKTLTPRLEAVIDEMKGK-VVLAKVDIDE------------------ 87
V + F+A+WC+ C P + + E VVL V
Sbjct: 24 KVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDY 83
Query: 88 -----LTD----LAMDYEVSAVP--VLIAMKNGKELDRLIGLQDIDKLKSFIDNL 131
L D L Y V + P I K GK + G + D + + L
Sbjct: 84 KNLPVLVDPSGKLLETYGVRSYPTQAFID-KEGKLVKTHPGFMEKDAILQTLKEL 137
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A
{Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Length = 361
Score = 59.3 bits (143), Expect = 2e-11
Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 35 NDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG--KVVLAKVDIDELTDLA 92
+FE + V V+F+A WC CK L P + + + K +V+AK+D +
Sbjct: 257 KNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTA--NEV 314
Query: 93 MDYEVSAVPVLIAMKNGKELDRLI--GLQDIDKLKSFIDNLVEKQSA 137
+V + P L + + G + +D K F+++ + +
Sbjct: 315 EAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFLESGGQDGAG 361
Score = 43.1 bits (101), Expect = 7e-06
Identities = 13/106 (12%), Positives = 31/106 (29%), Gaps = 7/106 (6%)
Query: 37 FEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAM--- 93
K I+ F + + + KGK++ +D D + +
Sbjct: 127 APKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRILEF 186
Query: 94 ----DYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEKQ 135
E AV ++ + + +++ F +E +
Sbjct: 187 FGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGK 232
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus
subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Length = 148
Score = 56.9 bits (138), Expect = 2e-11
Identities = 18/134 (13%), Positives = 43/134 (32%), Gaps = 36/134 (26%)
Query: 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELT 89
+V +K ++ F++ C+ CK P++ D+ + ++ + V +
Sbjct: 20 EVTREQLIGEKP------TLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSE 73
Query: 90 D---------------------------LAMDYEVSAVP--VLIAMKNGKELDRLIGLQD 120
D L +E VP + K G+ G
Sbjct: 74 DDLDPGKIKETAAEHDITQPIFVDSDHALTDAFENEYVPAYYVFD-KTGQLRHFQAGGSG 132
Query: 121 IDKLKSFIDNLVEK 134
+ L+ ++ ++ +
Sbjct: 133 MKMLEKRVNRVLAE 146
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19,
structural genomics, PSI, protein structure initiative;
1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Length = 164
Score = 57.4 bits (138), Expect = 2e-11
Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 4/104 (3%)
Query: 32 QDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRL--EAVIDEMKGKVVLAKVDIDELT 89
+ + D +K+ + P++V +WC CK L P+ I E+ V+ ++ +E
Sbjct: 33 RTLEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEP 92
Query: 90 DL-AMDYEVSAVP-VLIAMKNGKELDRLIGLQDIDKLKSFIDNL 131
+ +P +L +GK +I K F +
Sbjct: 93 KDEDFSPDGGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSA 136
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB
struct genomics consortium, TBSGC, unknown function;
1.90A {Mycobacterium tuberculosis}
Length = 352
Score = 58.5 bits (141), Expect = 4e-11
Identities = 18/118 (15%), Positives = 32/118 (27%), Gaps = 31/118 (26%)
Query: 47 PVIVDFFATWCNPCKTLTPRLEAVIDEMKGK--VVLA----------------------- 81
V++DF+A C C+ P + K V+
Sbjct: 84 VVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLG 143
Query: 82 ---KVDIDELTDLAMDYEVSAVP--VLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEK 134
+ +D +Y P LI G G D + ++ + L+
Sbjct: 144 ISYPIALDNNYATWTNYRNRYWPAEYLID-ATGTVRHIKFGEGDYNVTETLVRQLLND 200
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural
genomics, PSI, protein structure initiative; 1.12A
{Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 136
Score = 55.4 bits (134), Expect = 6e-11
Identities = 18/111 (16%), Positives = 29/111 (26%), Gaps = 28/111 (25%)
Query: 47 PVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDE------------------L 88
P ++ F+ WC C P L V + + L
Sbjct: 26 PAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVG-IATRADVGAMQSFVSKYNLNFTNL 84
Query: 89 TD----LAMDYEVSAVP--VLIAMKNGK--ELDRLIGLQDIDKLKSFIDNL 131
D + Y V P V +G ++ D+L + L
Sbjct: 85 NDADGVIWARYNVPWQPAFVFYR-ADGTSTFVNNPTAAMSQDELSGRVAAL 134
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD,
structural genomics, protein structure initiative; 1.80A
{Rhodopseudomonas palustris}
Length = 137
Score = 55.5 bits (133), Expect = 7e-11
Identities = 18/111 (16%), Positives = 42/111 (37%), Gaps = 2/111 (1%)
Query: 29 FKVQDMNDFEKKVKNASTPVIVDFFATW--CNPCKTLTPRLEAVIDEMKGKVVLAKVDID 86
+ D + + ++ V++ F L L +I+ G++V A+V +
Sbjct: 17 PTLVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAE 76
Query: 87 ELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEKQSA 137
L + V+ P L ++ + L + +QD + I ++ +
Sbjct: 77 AERGLMARFGVAVCPSLAVVQPERTLGVIAKIQDWSSYLAQIGAMLAEVDQ 127
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase,
sulfur oxidation, thiol- disulfide oxidoreductase; HET:
MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Length = 116
Score = 54.7 bits (131), Expect = 8e-11
Identities = 13/111 (11%), Positives = 32/111 (28%), Gaps = 7/111 (6%)
Query: 31 VQDMNDFEKKVKNASTP---VIVDFFATWCNPCKTLTPRLEAVID--EMKGKVVLAKVDI 85
++ + + ++ F C C + + + ++ +
Sbjct: 1 MRGSHHHHHHGSDDDDKAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQM 60
Query: 86 DE--LTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEK 134
+ L + V+ P + M E RL G D + L+ +
Sbjct: 61 RDPLPPGLELARPVTFTPTFVLMAGDVESGRLEGYPGEDFFWPMLARLIGQ 111
>2lrn_A Thiol:disulfide interchange protein; structural genomics,
thioredoxin-like, NEW YORK structural G research
consortium, oxidoreductase; NMR {Bacteroides SP}
Length = 152
Score = 55.0 bits (133), Expect = 1e-10
Identities = 32/156 (20%), Positives = 54/156 (34%), Gaps = 46/156 (29%)
Query: 18 SLSVGSAVYTSFKVQDMN-------DFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAV 70
SL+ GS V + D+ DF+ K V+VDF+ C+ C+ TP L
Sbjct: 2 SLATGS-VAPAITGIDLKGNSVSLNDFKGKY------VLVDFWFAGCSWCRKETPYLLKT 54
Query: 71 IDEMKGK--VVLAKVDIDE-------------------------LTDLAMDYEVSAVP-- 101
+ K K + V D + D+ Y + P
Sbjct: 55 YNAFKDKGFTIYG-VSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCIVGFPHI 113
Query: 102 VLIAMKNGKELDR-LIGLQDIDKLKSFIDNLVEKQS 136
+L+ GK + + L G + ++ F++ E
Sbjct: 114 ILVD-PEGKIVAKELRGDDLYNTVEKFVNGAKEGHH 148
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus
cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A
Length = 367
Score = 56.6 bits (136), Expect = 2e-10
Identities = 15/113 (13%), Positives = 40/113 (35%), Gaps = 11/113 (9%)
Query: 30 KVQDMND--FEKKVKNASTPVIVDFFATWCNPCKT------LTPRLEAVIDEMK-GKVVL 80
+V ++N ++ K + + + + + LE ++ V
Sbjct: 14 RVINVNAKNYKNVFKK-YEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGF 72
Query: 81 AKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVE 133
VD ++ +A ++ + K + ++ G D L F+ +++E
Sbjct: 73 GLVDSEKDAAVAKKLGLTEEDSIYVFKEDEVIEY-DGEFSADTLVEFLLDVLE 124
Score = 33.8 bits (77), Expect = 0.011
Identities = 15/117 (12%), Positives = 40/117 (34%), Gaps = 13/117 (11%)
Query: 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDE-- 87
K++ + +E + IV F L++V + L+ + ID
Sbjct: 232 KLKPESMYETWEDDMDGIHIVAFAEEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDD 291
Query: 88 --------LTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDI---DKLKSFIDNLVE 133
+D + V+ + +D+ ++L+ ++++++E
Sbjct: 292 FPLLVPYWEKTFDIDLSAPQIGVVNVTDADSVWMEMDDEEDLPSAEELEDWLEDVLE 348
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project protein structural and
functional analyses; 2.30A {Aquifex aeolicus} PDB:
2ayt_A
Length = 229
Score = 55.1 bits (132), Expect = 3e-10
Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 5/103 (4%)
Query: 36 DFEKKVKNASTPV-IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMD 94
+ ++ P+ I F T C C + + +D E DLA
Sbjct: 126 KTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALA-NDYITSKVIDASENQDLAEQ 184
Query: 95 YEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEKQSA 137
++V VP + K + +G Q + +I + EK
Sbjct: 185 FQVVGVP---KIVINKGVAEFVGAQPENAFLGYIMAVYEKLKR 224
Score = 52.7 bits (126), Expect = 2e-09
Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 10/109 (9%)
Query: 30 KVQDMNDFEKKVKNASTPVIVDFF--ATWCNPCKTLTPRLEAVID-----EMKGKVVLAK 82
++Q +K+ K PV + F A C C+T L+ ++ + K+ L
Sbjct: 8 RMQLKELAQKEFKE---PVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDI 64
Query: 83 VDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNL 131
+ Y V VP ++ + R IGL + + I+ +
Sbjct: 65 YSPFTHKEETEKYGVDRVPTIVIEGDKDYGIRYIGLPAGLEFTTLINGI 113
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2,
NYSGXRC, structu genomics, protein structure initiative;
1.76A {Thermus thermophilus}
Length = 154
Score = 53.5 bits (129), Expect = 4e-10
Identities = 26/151 (17%), Positives = 48/151 (31%), Gaps = 33/151 (21%)
Query: 16 SRSLSVGSAVYTSFKVQDMNDFEKKVKNAST--PVIVDFFATWCNPCKTLTPRLEAVIDE 73
S ++ G + F + D + V A+ P ++ F+A+WC CK P L V +E
Sbjct: 2 SLAVKPGEPL-PDFLLLDPKG--QPVTPATVSKPAVIVFWASWCTVCKAEFPGLHRVAEE 58
Query: 74 MKGKVVL-------------------------AKVDIDELTDLAMDYEVSAVP--VLIAM 106
+ D D ++A ++V P ++
Sbjct: 59 TGVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVLGQPWTFVVD- 117
Query: 107 KNGKELDRLIGLQDIDKLKSFIDNLVEKQSA 137
+ GK + G + L +
Sbjct: 118 REGKVVALFAGRAGREALLDALLLAGADLEG 148
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double
disulfide bridge, membrane protein; 1.60A
{Bradyrhizobium japonicum} SCOP: c.47.1.10
Length = 186
Score = 54.0 bits (130), Expect = 4e-10
Identities = 29/142 (20%), Positives = 50/142 (35%), Gaps = 42/142 (29%)
Query: 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGK--VVLAKVDIDE 87
K + ++DF K ++V+ +ATWC PC+ P L+ + ++ G V+A ++ID
Sbjct: 51 KPKKLSDFRGKT------LLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVA-INIDT 103
Query: 88 ----------------------------LTDLAMDYEVSAVP--VLIAMKNGKELDRLIG 117
DL +P VL+ G E+ + G
Sbjct: 104 RDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVD-PQGCEIATIAG 162
Query: 118 LQDID--KLKSFIDNLVEKQSA 137
+ I K +A
Sbjct: 163 PAEWASEDALKLIRAATGKAAA 184
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP:
c.47.1.10 PDB: 3ios_A
Length = 136
Score = 52.7 bits (127), Expect = 6e-10
Identities = 20/133 (15%), Positives = 41/133 (30%), Gaps = 31/133 (23%)
Query: 29 FKVQDMNDFEKKVKNAS---TPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVV------ 79
F + ++ S P ++ F+A WC C+ P + V
Sbjct: 8 FSAKTLDG--HDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGL 65
Query: 80 ---------LAKVDI-------DELTDLAMDYEVSAVP--VLIAMKNGKELDRLIGLQDI 121
+ K + D + ++ V+ P + +G +D + G
Sbjct: 66 DQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQPAYAFVD-PHGN-VDVVRGRMSQ 123
Query: 122 DKLKSFIDNLVEK 134
D+L + L +
Sbjct: 124 DELTRRVTALTSR 136
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul
structural genomics, PSI-2, protein structure
initiative; 1.30A {Xylella fastidiosa}
Length = 133
Score = 52.2 bits (125), Expect = 1e-09
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 9/95 (9%)
Query: 32 QDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLE--AVIDEMKGKVVLAKVDID--- 86
+ K P ++ F A WC C+ L L + + K+D+
Sbjct: 16 TQVKKALAAGKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFD 75
Query: 87 ---ELTDLAMDYEVSAVP-VLIAMKNGKELDRLIG 117
EL+ D +P V++ +GK G
Sbjct: 76 RNLELSQAYGDPIQDGIPAVVVVNSDGKVRYTTKG 110
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A
{Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Length = 123
Score = 52.0 bits (124), Expect = 1e-09
Identities = 19/120 (15%), Positives = 38/120 (31%), Gaps = 16/120 (13%)
Query: 24 AVYTSFKVQDMNDFEKKVKNASTPVIVDFFA--------TWCNPCKTLTPRLEAVIDEMK 75
A Y V +F + V+ + I +F +WC C P + + +
Sbjct: 2 ARYEEVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHIS 61
Query: 76 GKVVLAKVDIDELTDLA-------MDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFI 128
V + E + +V+AVP L+ ++L + ++
Sbjct: 62 EGCVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQKLVE-SECLQANLVEMLF 120
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG,
structural genomics, midwest center for structural
genomics; 1.75A {Corynebacterium glutamicum}
Length = 183
Score = 52.5 bits (126), Expect = 2e-09
Identities = 17/140 (12%), Positives = 46/140 (32%), Gaps = 42/140 (30%)
Query: 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGK-------VVLAK 82
+++DFE +V VI++ + WC PC++ + L+ + +E++ +
Sbjct: 50 TQINLSDFENQV------VILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLG 103
Query: 83 VDIDE--------------------------LTDLAMDYEVSAVP--VLIAMKNGKELDR 114
+++ + S +P +++ K +
Sbjct: 104 INVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTAASLGGVPASVIPTTIVLD-KQHRPAAV 162
Query: 115 LIGLQDIDKLKSFIDNLVEK 134
+ + LV++
Sbjct: 163 FLREVTSKDVLDVALPLVDE 182
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga
hutchinsoni structural genomics, PSI-2, protein
structure initiative; 1.88A {Cytophaga hutchinsonii}
Length = 148
Score = 51.6 bits (124), Expect = 2e-09
Identities = 29/156 (18%), Positives = 55/156 (35%), Gaps = 46/156 (29%)
Query: 16 SRSLSVGSAVYTSFKVQDMN-------DFEKKVKNASTPVIVDFFATWCNPCKTLTPRLE 68
+ L +G + + D D + K I+ F+ + C C+ TP+L
Sbjct: 2 NAPLLLGK-KAPNLYMTDTTGTYRYLYDVQAKY------TILFFWDSQCGHCQQETPKLY 54
Query: 69 AVIDEMKGK--VVLAKVDIDE-------------------------LTDLAMDYEVSAVP 101
+ + K V A +I+ TD + Y++ A P
Sbjct: 55 DWWLKNRAKGIQVYA-ANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDIYATP 113
Query: 102 --VLIAMKNGKELDRLIGLQDID-KLKSFIDNLVEK 134
++ KN + + IG +++D L + +L K
Sbjct: 114 VLYVLD-KNKVIIAKRIGYENLDDFLVQYEKSLKTK 148
>2ls5_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, NEW structural genomics research
consortium; NMR {Bacteroides thetaiotaomicron}
Length = 159
Score = 51.6 bits (124), Expect = 3e-09
Identities = 32/158 (20%), Positives = 60/158 (37%), Gaps = 44/158 (27%)
Query: 19 LSVGSAVYT-----SFKVQDMNDFEKKVKNAS---TPVIVDFFATWCNPCKTLTPRLEAV 70
+S+G V F + + K+V +S V++ F A+WC C+ P +E
Sbjct: 1 MSLGYIVRIGEMAPDFTITLTDG--KQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKD 58
Query: 71 IDEMKGK----VVLAKVDIDE-------------LT---------DLAMDYEV--SAVP- 101
I ++ +D DE +T D+ Y + + +
Sbjct: 59 IWLKHKDNADFALIG-IDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYALRDAGITR 117
Query: 102 -VLIAMKNGK--ELDRLIGLQDIDKLKSFIDNLVEKQS 136
VLI + GK +L RL ++ L I+ ++++
Sbjct: 118 NVLID-REGKIVKLTRLYNEEEFASLVQQINEMLKEGH 154
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G
midwest center for structural genomics, protein
structure initiative; 1.70A {Aeropyrum pernix}
Length = 165
Score = 51.4 bits (123), Expect = 3e-09
Identities = 19/149 (12%), Positives = 46/149 (30%), Gaps = 48/149 (32%)
Query: 29 FKVQDMNDFEKKVKNAST---PVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLA---- 81
F + ++ + + + VI+ F A WC C + L+ + ++ + V+A
Sbjct: 20 FSLTTIDG--EVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYREISVIAIDFW 77
Query: 82 -----------------------------------KVDIDELTDLAMDYEVSAVP--VLI 104
+ + + L + V ++ V++
Sbjct: 78 TAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIMVMDDGSLVEKFNVRSIDYIVIM 137
Query: 105 AMKNGKELDRLIGLQDIDKLKSFIDNLVE 133
K+ L +L+S I ++
Sbjct: 138 D-KSSNVLYAGTTPSL-GELESVIKSVQG 164
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote
structural genomics, structural genomics consortium,
SGC, U function; 1.73A {Plasmodium yoelii}
Length = 160
Score = 50.9 bits (121), Expect = 5e-09
Identities = 19/83 (22%), Positives = 36/83 (43%)
Query: 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMK 107
V + F + C + L V D++K V+ VDI E+ D YE+ ++
Sbjct: 44 VCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVPDFNTMYELYDPVSVMFFY 103
Query: 108 NGKELDRLIGLQDIDKLKSFIDN 130
K + +G + +K+ ++N
Sbjct: 104 RNKHMMIDLGTGNNNKINWPMNN 126
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR
{Chlamydophila pneumoniae}
Length = 154
Score = 48.8 bits (116), Expect = 3e-08
Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 16/100 (16%)
Query: 32 QDMNDFEKKVKNASTPVIVDF-FATWCNPCKTL---TPRLEAVIDEMKGKVVLAKVDIDE 87
+ + + K P+ + F + WC C + + + + +VD +
Sbjct: 34 ESYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQ 93
Query: 88 LTD-----------LAMDYEVSAVPVLIAM-KNGKELDRL 115
L Y+V+ P L+ + GK+L R+
Sbjct: 94 KNHQPEEQRQKNQELKAQYKVTGFPELVFIDAEGKQLARM 133
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW
YORK structural G research consortium, nysgrc,
PSI-biology; NMR {Bacteroides vulgatus}
Length = 152
Score = 48.5 bits (116), Expect = 3e-08
Identities = 21/134 (15%), Positives = 41/134 (30%), Gaps = 36/134 (26%)
Query: 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGK--VVLA------ 81
+ + D + KV V++DF L + ++ + +
Sbjct: 26 NTRSLTDLKGKV------VLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGD 79
Query: 82 ----KVDIDELT------------DLAMDYEVSAVP--VLIAMKNGKELDRLIGLQDIDK 123
K D L Y V+ +P L+ +N + R ++D+D+
Sbjct: 80 EHFWKTSADNLPWVCVRDANGAYSSYISLYNVTNLPSVFLVN-RNNELSARGENIKDLDE 138
Query: 124 LKSFIDNLVEKQSA 137
I L+E
Sbjct: 139 ---AIKKLLEGHHH 149
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein
disulfide isomerase, endoplasmic R isomerase; 1.83A
{Homo sapiens}
Length = 151
Score = 47.7 bits (113), Expect = 6e-08
Identities = 15/105 (14%), Positives = 36/105 (34%), Gaps = 8/105 (7%)
Query: 34 MNDFEKKVKNAST---PVIVDFFATWCNPCKTLTPRL---EAVIDEMKGKVVLAKVDIDE 87
+ +E+ + A P++V C + L E + + + K ++ + E
Sbjct: 30 VQTYEEGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLM-HE 88
Query: 88 LTDLAMDYEVSAVPVLIAM-KNGKELDRLIGLQDIDKLKSFIDNL 131
TD + + VP ++ + + + G +L
Sbjct: 89 TTDKNLSPDGQYVPRIMFVDPSLTVRADIAGRYSNRLYTYEPRDL 133
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2,
structure initiative, midwest center for structural
genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Length = 148
Score = 47.3 bits (113), Expect = 7e-08
Identities = 24/152 (15%), Positives = 57/152 (37%), Gaps = 43/152 (28%)
Query: 19 LSVGSAVYTSFKVQDMNDFEKKVKNAST-----PVIVDFFATWCNPCKTLTPRLEAVIDE 73
++VG F + + +K+ ++ ++++F+A+WC+P L+ + E
Sbjct: 5 VTVGK-SAPYFSLPNEKG--EKLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKE 61
Query: 74 MKGK---VVLAKVDIDE-------------------------LTDLAMDYEVSAVP--VL 103
K +L + +D ++ A Y + +P +L
Sbjct: 62 YKKNKNFAMLG-ISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYAILTLPTNIL 120
Query: 104 IAMKNGKELDRLIGLQDIDKLKSFIDNLVEKQ 135
++ GK L R I + + + L++ +
Sbjct: 121 LS-PTGKILARDIQGEALTG---KLKELLKTE 148
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural
genomics, joint center F structural genomics, JCSG;
2.02A {Parabacteroides distasonis}
Length = 143
Score = 47.0 bits (112), Expect = 9e-08
Identities = 6/80 (7%), Positives = 28/80 (35%), Gaps = 14/80 (17%)
Query: 15 PSRSLSVGSAVYTSFKVQDMN------DFEKKVKNASTPVIVDFFATWCNPCKTLTPRLE 68
+ ++ G + + + + + +++F+A + + +L
Sbjct: 3 LTEGVNPGD-LAPRIEFLGNDAKASFHNQLGRY------TLLNFWAAYDAESRARNVQLA 55
Query: 69 AVIDEMKGK-VVLAKVDIDE 87
+++ + + + +DE
Sbjct: 56 NEVNKFGPDKIAMCSISMDE 75
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily
protein SPOA0173, silicibacter DSS, structural genomics,
PSI-2; 1.95A {Silicibacter pomeroyi}
Length = 158
Score = 47.0 bits (112), Expect = 1e-07
Identities = 21/151 (13%), Positives = 38/151 (25%), Gaps = 43/151 (28%)
Query: 28 SFKVQDMNDFEKKVKNAST---PVIVDFFATWCNPCKT-LTPRLEAVIDEMKGK--VVLA 81
++Q + + A ++++ F C C P + V VL
Sbjct: 8 ELQIQQWFNSATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLG 67
Query: 82 KVDIDELTDLAMD---------------------------------YEVSAVP--VLIAM 106
+ AM Y++ P +LI
Sbjct: 68 -LHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLID- 125
Query: 107 KNGKELDRLIGLQDIDKLKSFIDNLVEKQSA 137
K G G L + I L+ + +
Sbjct: 126 KAGDLRAHHFGDVSELLLGAEIATLLGEAAP 156
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron
transport; 1.80A {Leishmania major}
Length = 165
Score = 46.4 bits (110), Expect = 2e-07
Identities = 23/127 (18%), Positives = 39/127 (30%), Gaps = 35/127 (27%)
Query: 30 KVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGK----VVLAKVDI 85
DM+ K V F A+WC PC+ TP+L ++ ++LA D
Sbjct: 39 DTADMDSLSGKT------VFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDE 92
Query: 86 DE----------------------LTDLAMDYEVSAVP--VLIAMKNGKELDR-LIGLQD 120
+E + L Y V ++P + + G +
Sbjct: 93 EEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSVESIPTLIGLNADTGDTVTTRARHALT 152
Query: 121 IDKLKSF 127
D +
Sbjct: 153 QDPMGEQ 159
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
c.47.1.24
Length = 153
Score = 46.1 bits (109), Expect = 3e-07
Identities = 17/108 (15%), Positives = 36/108 (33%), Gaps = 13/108 (12%)
Query: 36 DFEKKVKNAST---PVIVDFFATWCNPCKTLTPRL---EAVIDEMKGKVVLAKVDID--E 87
FE + ++++ C+ L + EAV + ++ + +V D E
Sbjct: 30 SFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEE 89
Query: 88 LTDLAMDYEVSAVP-VLIAMKNGKELDRLIGLQD----IDKLKSFIDN 130
Y++ P V I + D +D++ F+
Sbjct: 90 GQRYIQFYKLGDFPYVSILDPRTGQKLVEWHQLDVSSFLDQVTGFLGE 137
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural
genomics, PSI, protein structure initiative; NMR
{Nitrosomonas europaea}
Length = 107
Score = 45.2 bits (107), Expect = 3e-07
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
Query: 37 FEKKVKNASTPVIVDFFAT-WCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDY 95
F+ + N P + + C+ C+ + L + + L ++ID L Y
Sbjct: 19 FQGHMNNQVEPRKLVVYGREGCHLCEEMIASLRVLQKKSW--FELEVINIDGNEHLTRLY 76
Query: 96 EVSAVPVLIAMKNGKELD--RLIGLQDIDKLKSFI 128
VPVL A+ KEL L D D + +++
Sbjct: 77 NDR-VPVLFAVNEDKELCHYFL----DSDVIGAYL 106
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural
genomics, midwest CE structural genomics; HET: MSE;
2.20A {Corynebacterium glutamicum}
Length = 160
Score = 44.8 bits (106), Expect = 8e-07
Identities = 15/129 (11%), Positives = 32/129 (24%), Gaps = 39/129 (30%)
Query: 47 PVIVDFFATWCNPCKTLT-PRLEAVIDEMKGK--VVLA---------------------- 81
V+V+ F C C P+ + + + V+
Sbjct: 32 VVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDE 91
Query: 82 -----------KVDIDELTDLAMDYEVSAVP--VLIAMKNGKELDRLIGLQDIDKLKSFI 128
+ + Y + P +L + G+ G D L +
Sbjct: 92 FGIKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILAD-RKGRIRQVQFGQVDDFVLGLLL 150
Query: 129 DNLVEKQSA 137
+L+ +
Sbjct: 151 GSLLSETDE 159
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia
fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A
1oc9_B 1fg4_A 1oc9_A
Length = 144
Score = 44.0 bits (104), Expect = 1e-06
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 5/75 (6%)
Query: 26 YTSFKVQDMNDFEKKVKNAS---TPVIVDFFATWCNPCKTLTPRLEAVIDEMKGK--VVL 80
+ + + + S V F A+WC P + TP+L K +
Sbjct: 6 FFPYSTNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEV 65
Query: 81 AKVDIDELTDLAMDY 95
+ DE + DY
Sbjct: 66 MLISWDESAEDFKDY 80
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin;
2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Length = 144
Score = 43.8 bits (104), Expect = 2e-06
Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 36/108 (33%)
Query: 36 DFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGK---VVLAKVDIDE----- 87
K V + F A+WC PC+ TP L ++ V+ + DE
Sbjct: 25 SLVGKT------VFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVL-ISWDENESDF 77
Query: 88 -------------------LTDLAMDYEVSAVP--VLIAMKNGKELDR 114
+++L + V ++P + I G +
Sbjct: 78 HDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGT 125
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain
(residues 33-153), D domain (residues 154-261), CHA;
2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Length = 240
Score = 44.6 bits (105), Expect = 2e-06
Identities = 17/109 (15%), Positives = 41/109 (37%), Gaps = 14/109 (12%)
Query: 33 DMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKG--KVVLAKVDIDEL-- 88
D F K + S V+V F + K + + + +++A+V I +
Sbjct: 11 DTVTFYKVIPK-SKFVLVKFDTQYPYGEK--QDEFKRLAENSASSDDLLVAEVGISDYGD 67
Query: 89 ---TDLAMDYEVSAV--PVLIAMKNGKELDRLI--GLQDIDKLKSFIDN 130
+L+ Y++ PV ++G + + G + ++ ++
Sbjct: 68 KLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWLKG 116
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius
rotundicauda}
Length = 143
Score = 43.2 bits (102), Expect = 2e-06
Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 29/96 (30%)
Query: 48 VIVDFFATWCNPCKTLTPRLEAVIDEMKGK-----VVLAKVDIDE--------------- 87
+ F A WC PC+ TP L + E+ ++ D E
Sbjct: 29 IGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWL 88
Query: 88 --------LTDLAMDYEVSAVPVLIAM-KNGKELDR 114
+++ Y ++ +P L+ + K+G +
Sbjct: 89 AIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISM 124
>3f9u_A Putative exported cytochrome C biogenesis-related; exported
cytochrome C biogenesis-related protein, bacteroide
fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Length = 172
Score = 43.1 bits (101), Expect = 4e-06
Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 34/144 (23%)
Query: 25 VYTSFKVQDMNDFE---KKVKNASTPVIVDFFATWCNPCKTL---TPRLEAVIDEMKGKV 78
+YT+ +D++ + + + PV++DF C C+ + V +
Sbjct: 24 LYTNEVHAKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDY 83
Query: 79 VLAKVDIDELTDL--------------------------AMDYEVSAVPVLIAM-KNGKE 111
VL + +D T L + + +A P + + G
Sbjct: 84 VLITLYVDNKTPLTEPVKIMENGTERTLRTVGDKWSYLQRVKFGANAQPFYVLIDNEGNP 143
Query: 112 LDRLIG-LQDIDKLKSFIDNLVEK 134
L++ +DI K +F+ +E
Sbjct: 144 LNKSYAYDEDISKYINFLQTGLEN 167
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural
genomics, protein S initiative, midwest center for
structural genomics; HET: MSE; 1.30A {Bacteroides
fragilis}
Length = 142
Score = 42.7 bits (101), Expect = 4e-06
Identities = 20/133 (15%), Positives = 39/133 (29%), Gaps = 46/133 (34%)
Query: 29 FKVQDMN-------DFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEA---VIDEMKGK- 77
F + F + ++ C+ C + L+A + K
Sbjct: 14 FTYTLDSGVKGTLYQFPAEY------TLLFINNPGCHACAEMIEGLKASPVINGFTAAKK 67
Query: 78 -VVLAKVDIDE------------------------LTDLAMDYEVSAVP--VLIAMKNGK 110
VL+ + DE + Y++ A+P L+ KN
Sbjct: 68 LKVLS-IYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLYDLRAIPTLYLLD-KNKT 125
Query: 111 ELDRLIGLQDIDK 123
L + LQ +++
Sbjct: 126 VLLKDATLQKVEQ 138
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A
{Aeropyrum pernix}
Length = 243
Score = 43.7 bits (102), Expect = 4e-06
Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 9/108 (8%)
Query: 39 KKVKNASTPV-IVDFFATWCNPCKTLTPRLEAV----IDEMKGKVVLAKVDIDELTDLAM 93
+ +K+ V I C C + ++ V+ E D+A
Sbjct: 131 EALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIAD 190
Query: 94 DYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEKQSAVNSP 141
Y V +VP + NG + +G+ + ++ + E + V P
Sbjct: 191 KYGVMSVPSIAI--NGYLV--FVGVPYEEDFLDYVKSAAEGRLTVKGP 234
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1,
thiol-disulfide oxidoreduct TLPA-like family, PSI-2;
1.74A {Bacteroides thetaiotaomicron}
Length = 150
Score = 42.4 bits (100), Expect = 6e-06
Identities = 25/156 (16%), Positives = 60/156 (38%), Gaps = 45/156 (28%)
Query: 16 SRSLSVGSAVYTSFKVQDMNDFEKKVKNAST-----PVIVDFFATWCNPC--KTLTPRLE 68
+ +G F + + +K+ +S ++++F+A+W + K L
Sbjct: 2 NAKSEIGK-YAPFFSLPNAKG--EKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELR 58
Query: 69 AVIDEMKGK---VVLAKVDIDE-------------------------LTDLAMDYEVSAV 100
+ + K +L + +D +++A Y + +
Sbjct: 59 EIYKKYKKNKYIGMLG-ISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQYSIYKI 117
Query: 101 P--VLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEK 134
P +L++ +GK L + + ++LK I+N+VE+
Sbjct: 118 PANILLS-SDGKILAKNLR---GEELKKKIENIVEE 149
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation,
disulfide bonds tryparedoxin, thioredoxin, trypanosome;
1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A
1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Length = 146
Score = 40.9 bits (96), Expect = 2e-05
Identities = 19/138 (13%), Positives = 39/138 (28%), Gaps = 43/138 (31%)
Query: 7 LTSINKCIPSRSL--SVGSAVYTSFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLT 64
++ ++K +P V K+ V F A+WC P + T
Sbjct: 1 MSGLDKYLPGIEKLRRGDGEVEVK-------SLAGKL------VFFYFSASWCPPARGFT 47
Query: 65 PRLEAVIDEMKGKVVLAKV--------------------------DIDELTDLAMDYEVS 98
P+L D+ V + + L+ + V
Sbjct: 48 PQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVE 107
Query: 99 AVP--VLIAMKNGKELDR 114
++P + + +G +
Sbjct: 108 SIPTLIGVDADSGDVVTT 125
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Length = 167
Score = 40.8 bits (95), Expect = 2e-05
Identities = 14/96 (14%), Positives = 31/96 (32%), Gaps = 6/96 (6%)
Query: 25 VYTSFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVD 84
S + + ++V WC C+ L+ ++ + LA +
Sbjct: 35 KLESNGLPSALTERLQRIERRYRLLV-AGEMWCPDCQINLAALDF-AQRLQPNIELAIIS 92
Query: 85 IDELTDLAMDY---EVSAVPVLIAM-KNGKELDRLI 116
D E A+P+++ + + L R +
Sbjct: 93 KGRAEDDLRQRLALERIAIPLVLVLDEEFNLLGRFV 128
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold,
structural genomics, PSI-2, protein structu initiative;
2.00A {Bacteroides fragilis}
Length = 142
Score = 40.4 bits (95), Expect = 3e-05
Identities = 17/148 (11%), Positives = 42/148 (28%), Gaps = 48/148 (32%)
Query: 20 SVGSAVYTSFKVQDMN-------DFEKKVKNASTPVIVDFFATWCNPCKTLTPRL---EA 69
+ G F ++ + + ++ F+ C+ C+ A
Sbjct: 2 NAGM-KAADFTYVTVHGDNSRMSRLKAQY------TMLFFYDPDCSNCRKFEKLFAEIPA 54
Query: 70 VIDEMKGK--VVLAKVDIDE------------------------LTDLAMDYEVSAVP-- 101
++ ++ VLA + DE Y++ A P
Sbjct: 55 FVEMVENGTLRVLA-IYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLYDIRATPTI 113
Query: 102 VLIAMKNGKELDRLIGLQDI-DKLKSFI 128
L+ + + + ++ + D L +
Sbjct: 114 YLLD-GRKRVILKDTSMEQLIDYLATQA 140
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide
exchange, cell inner membrane, CYT C-type biogenesis,
disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB:
3kh9_A
Length = 176
Score = 38.8 bits (91), Expect = 1e-04
Identities = 29/147 (19%), Positives = 48/147 (32%), Gaps = 32/147 (21%)
Query: 10 INKCIPSRSLSVGSAVYTSFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEA 69
I K P+ L +V + D + K P +V+ + TWC C+ P L
Sbjct: 32 IGKPFPAFDLP---SVQDPARRLTEADLKGK------PALVNVWGTWCPSCRVEHPELTR 82
Query: 70 -------VI------DEMKGKVVLAK-------VDIDELTDLAMDYEVSAVP--VLIAMK 107
+ D L + D L +D V P LI K
Sbjct: 83 LAEQGVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVYGAPETYLID-K 141
Query: 108 NGKELDRLIGLQDIDKLKSFIDNLVEK 134
G +++G+ D + + L ++
Sbjct: 142 QGIIRHKIVGVVDQKVWREQLAPLYQQ 168
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide
isomerase, struc genomics, PSI-2, protein structure
initiative; 1.85A {Nitrosomonas europaea}
Length = 216
Score = 37.3 bits (86), Expect = 7e-04
Identities = 7/70 (10%), Positives = 19/70 (27%), Gaps = 2/70 (2%)
Query: 68 EAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSF 127
+ + + +S P L+ G + I+ L+
Sbjct: 147 SRFTPVFQSDEAKQRTLAGF--QRVAQWGISGFPALVVESGTDRYLITTGYRPIEALRQL 204
Query: 128 IDNLVEKQSA 137
+D +++
Sbjct: 205 LDTWLQQHGV 214
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal
thioredoxin-like domain, N-terminal beta-sheet,
fingerprint rigion, oxidoreductase; 1.90A {Escherichia
coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Length = 168
Score = 36.5 bits (85), Expect = 8e-04
Identities = 31/147 (21%), Positives = 47/147 (31%), Gaps = 31/147 (21%)
Query: 10 INKCIPSRSLSVGSAVYTSFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEA 69
I K +P L ++ + + + PV+++ +ATWC C+ L
Sbjct: 24 IGKPVPKFRLE---SLDNPGQFYQADVLTQG-----KPVLLNVWATWCPTCRAEHQYLNQ 75
Query: 70 -------VI------DEMKGKVVLAK-------VDIDELTDLAMDYEVSAVP--VLIAMK 107
V+ D K L + D L +D V P LI
Sbjct: 76 LSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLID-G 134
Query: 108 NGKELDRLIGLQDIDKLKSFIDNLVEK 134
NG R G + + I L EK
Sbjct: 135 NGIIRYRHAGDLNPRVWEEEIKPLWEK 161
>1bed_A DSBA oxidoreductase; TCPG, protein disulfide isomerase, disulfide
oxidoreductase; 2.00A {Vibrio cholerae} SCOP: c.47.1.13
PDB: 2ijy_A
Length = 181
Score = 36.6 bits (84), Expect = 0.001
Identities = 10/68 (14%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 68 EAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSF 127
G V + V + D ++ VP ++ N + L + ++ +D+
Sbjct: 118 AKFDAAYNGFAVDSMVRRFD--KQFQDSGLTGVPAVVV--NNRYLVQGQSVKSLDEYFDL 173
Query: 128 IDNLVEKQ 135
++ L+ +
Sbjct: 174 VNYLLTLK 181
Score = 29.7 bits (66), Expect = 0.20
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 44 ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAK 82
+S+PV+ +FF+ +C C T P + + ++ K
Sbjct: 17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQK 55
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond,
redox-active center, transcription regulator; HET: MSE
GOL; 1.50A {Pseudomonas aeruginosa PAO1}
Length = 192
Score = 35.9 bits (82), Expect = 0.002
Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 4/84 (4%)
Query: 54 ATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELD 113
+ E + + +++ + LAM Y+V+ VP ++ NGK
Sbjct: 109 EEMADFLAGKGVDKEKFLSTYNSFAIKGQMEKAK--KLAMAYQVTGVPTMVV--NGKYRF 164
Query: 114 RLIGLQDIDKLKSFIDNLVEKQSA 137
+ ++ D L+EK+ A
Sbjct: 165 DIGSAGGPEETLKLADYLIEKERA 188
Score = 31.7 bits (71), Expect = 0.054
Identities = 7/47 (14%), Positives = 15/47 (31%)
Query: 40 KVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDID 86
V +V+ F C C P + +++ V ++
Sbjct: 20 PVSQPGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPAL 66
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold,
cytochrome C maturation, atomic resolution
oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP:
c.47.1.10
Length = 156
Score = 34.9 bits (81), Expect = 0.003
Identities = 30/151 (19%), Positives = 56/151 (37%), Gaps = 33/151 (21%)
Query: 10 INKCIPS---RSLSVGSAVYTSFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPR 66
I + P L A D F+ K +V+ +A+WC PC P
Sbjct: 10 IGRPAPQTALPPLEGLQADNVQVPGLDPAAFKGK------VSLVNVWASWCVPCHDEAPL 63
Query: 67 LEAVIDEMKGKVV--------------LAK-------VDIDELTDLAMDYEVSAVP--VL 103
L + + + ++V L + V +D ++++ V VP +
Sbjct: 64 LTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVPETFV 123
Query: 104 IAMKNGKELDRLIGLQDIDKLKSFIDNLVEK 134
+ + G + +L+G D L+S + +EK
Sbjct: 124 VG-REGTIVYKLVGPITPDNLRSVLLPQMEK 153
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics,
PSI-2, protein ST initiative, midwest center for
structural genomics, MCSG; HET: MSE; 1.76A {Vibrio
fischeri}
Length = 185
Score = 35.0 bits (79), Expect = 0.004
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 68 EAVIDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSF 127
+E + ++ KVD + L+ +S+VP + NGK + G D ++
Sbjct: 123 PYDFNEEQRDTLIKKVDNAK--MLSEKSGISSVPTFVV--NGKYNVLIGGHDDPKQIADT 178
Query: 128 IDNLVEK 134
I L+EK
Sbjct: 179 IRYLLEK 185
Score = 29.6 bits (65), Expect = 0.29
Identities = 10/93 (10%), Positives = 32/93 (34%)
Query: 38 EKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEV 97
++N + + FA C C+ + L + E + + ++ +A +
Sbjct: 15 STSLENDGMAPVTEVFALSCGHCRNMENFLPVISQEAGTDIGKMHITFNQSAHIASMFYY 74
Query: 98 SAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDN 130
+A + + ++ L + + + +
Sbjct: 75 AAEMQVDGAPDHAFMEDLFAATQMGEGTTLTEQ 107
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein,
periplasm, redox-active center, oxidoreductase; HET:
PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Length = 195
Score = 33.8 bits (76), Expect = 0.010
Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 7/98 (7%)
Query: 37 FEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYE 96
+KK + + F T + EA +K V ++ + +
Sbjct: 105 HDKKERWSDGKDPAAFIKTGLDAAGMSQADFEAA---LKEPAVQETLEKWK--ASYDVAK 159
Query: 97 VSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEK 134
+ VP + NGK L ++ ID + I L K
Sbjct: 160 IQGVPAYVV--NGKYLIYTKSIKSIDAMADLIRELASK 195
Score = 28.0 bits (61), Expect = 0.93
Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 3/105 (2%)
Query: 38 EKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDE-MKGKVVLAKVDIDELTDLAMD-Y 95
EK + NA ++ F+ C C + + E +K V ++ +
Sbjct: 11 EKPIPNAD-KTLIKVFSYACPFCYKYDKAVTGPVSEKVKDIVAFTPFHLETKGEYGKQAS 69
Query: 96 EVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEKQSAVNS 140
EV AV + G L K + +K+ +
Sbjct: 70 EVFAVLINKDKAAGISLFDANSQFKKAKFAYYAAYHDKKERWSDG 114
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.012
Identities = 24/141 (17%), Positives = 45/141 (31%), Gaps = 47/141 (33%)
Query: 45 STPVIVDF-FATWCNPCKTL--TP-----RLEAVIDEMKGKVVLAKV--------DIDEL 88
S P+I A + K L TP L+ +G +V A
Sbjct: 237 SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG-LVTAVAIAETDSWESFFVS 295
Query: 89 TDLAMD------------YEVSAVPVLI---AMKNGKE-----LDRLIGLQDIDKLKSFI 128
A+ Y +++P I +++N + L + L ++++ ++
Sbjct: 296 VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML-SISNL-TQEQVQDYV 353
Query: 129 DNL-----VEKQ---SAVNSP 141
+ KQ S VN
Sbjct: 354 NKTNSHLPAGKQVEISLVNGA 374
Score = 29.2 bits (65), Expect = 0.45
Identities = 20/126 (15%), Positives = 34/126 (26%), Gaps = 54/126 (42%)
Query: 14 IPSRSLSV--GSAVYTSFKVQDMNDFEKKVKNASTPVIVDFFATWCNPCKTLTPRLEAVI 71
+R L++ GS + V + F AS + + F K L E
Sbjct: 4 YSTRPLTLSHGS-LEHVLLVPTASFF-----IAS--QLQEQFN------KILPEPTEG-- 47
Query: 72 DEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNL 131
A D E + L+ + +G ++ +L
Sbjct: 48 -------------------FAADDEPTTPAELVG--------KFLG---------YVSSL 71
Query: 132 VEKQSA 137
VE
Sbjct: 72 VEPSKV 77
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase,
disulfide bond; 1.45A {Neisseria meningitidis MC58}
PDB: 3dvw_A 3a3t_A
Length = 193
Score = 31.7 bits (71), Expect = 0.049
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 40 KVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAK 82
+ A +++FF +C C L P L K + L
Sbjct: 19 PQQQAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRT 61
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase
subunit OST6; oxidoreductase, active site loop, redox
state, membrane; HET: PG4; 1.30A {Saccharomyces
cerevisiae} PDB: 3g7y_A 3g9b_A*
Length = 178
Score = 31.5 bits (71), Expect = 0.057
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 57 CNPCKTLTPRLEAV-----IDEMKGKVVLAKVDIDELTDLAMDYEVSAVPVLI 104
C C AV + + VD++E+ L D ++ VP L+
Sbjct: 56 CQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQLVKDLKLQNVPHLV 108
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure
initiative II(PSI II), NYSGXRC, structural genomics;
2.35A {Bordetella parapertussis}
Length = 195
Score = 30.4 bits (68), Expect = 0.13
Identities = 11/44 (25%), Positives = 17/44 (38%)
Query: 40 KVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKV 83
+++FFA C C + P +E VVL +V
Sbjct: 20 PSDTPGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVVLKQV 63
>1wwj_A Circadian clock protein KAIB; 1.90A {Synechocystis SP} PDB: 1r5p_A
2qke_A 1vgl_A
Length = 105
Score = 29.8 bits (67), Expect = 0.14
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 73 EMKGKVVLAKVDIDELTDLAMDYEVSAVPVLIAMKNGKELDRLIG-LQDIDKLKSFIDNL 131
E +G L +D+ + LA + ++ A P L + ++IG L D +K+ +D L
Sbjct: 35 EFQGVYALKVIDVLKNPQLAEEDKILATPTLAK-ILPPPVRKIIGDLSDREKVLIGLD-L 92
Query: 132 VEKQSAVNSP 141
+ +
Sbjct: 93 LYDEIREREA 102
>3me7_A Putative uncharacterized protein; electron transfer protein,
electron transport, structural GE PSI-2, protein
structure initiative; 1.50A {Aquifex aeolicus} PDB:
3me8_A
Length = 170
Score = 29.7 bits (67), Expect = 0.23
Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 17/79 (21%)
Query: 19 LSVGSAVYTSFKVQDMN-------DFEKKVKNASTPVIVDFFATWC-NPCKTLTPRLEAV 70
+S+G+ V + D + + K P+I+ T C C +T L V
Sbjct: 1 MSLGTYVPGDITLVDSYGNEFQLKNLKGK------PIILSPIYTHCRAACPLITKSLLKV 54
Query: 71 IDEMKG---KVVLAKVDID 86
I ++ + D
Sbjct: 55 IPKLGTPGKDFWVITFTFD 73
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold,
DSBA-like, oxidoreductase; 2.30A {Neisseria
meningitidis serogroup B} PDB: 3dvx_A
Length = 195
Score = 29.4 bits (65), Expect = 0.26
Identities = 7/43 (16%), Positives = 15/43 (34%)
Query: 40 KVKNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAK 82
+ + +++FF +C C P L + + L
Sbjct: 17 PQEQSGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRT 59
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA,
thioredoxin fold, redox- active center; 1.90A {Xylella
fastidiosa}
Length = 193
Score = 29.3 bits (65), Expect = 0.35
Identities = 9/45 (20%), Positives = 13/45 (28%)
Query: 42 KNASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDID 86
A +V+ F C C +L+A V V
Sbjct: 22 PLAGKIEVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRFTLVPAV 66
>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola
insolens} SCOP: c.47.1.2 PDB: 2kp2_A
Length = 133
Score = 28.7 bits (64), Expect = 0.41
Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 5/90 (5%)
Query: 49 IVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLAMDYEVSA--VPVLIAM 106
+ FA K L+ +L+ + + +G + +D A + + P
Sbjct: 26 LAYIFAETAEERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNLKTDKFPAFAIQ 85
Query: 107 ---KNGKELDRLIGLQDIDKLKSFIDNLVE 133
KN K + +K+F+D+ V
Sbjct: 86 EVAKNQKFPFDQEKEITFEAIKAFVDDFVA 115
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.1 bits (64), Expect = 0.48
Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 38/147 (25%)
Query: 4 LPR---LTSINKCI----PSRSLSV----GS-------AVYTSFKVQDMNDFE---KKVK 42
+ R + + + P++++ + GS V S+KVQ DF+ +K
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 43 NASTPVIVDFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDL--AMDYEVSAV 100
N ++P + P + D + EL L + YE
Sbjct: 191 NCNSP--ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC-- 246
Query: 101 PVLIAMKNGKELDRLIGLQDIDKLKSF 127
+L+ L +Q+ +F
Sbjct: 247 -LLV-------LL---NVQNAKAWNAF 262
Score = 26.7 bits (58), Expect = 3.6
Identities = 30/177 (16%), Positives = 54/177 (30%), Gaps = 63/177 (35%)
Query: 2 C-LLPRLTSINKCIPSRSLSVGSAVYTSFKVQDMND----------FEKKVKNAST---- 46
C +L LT+ K + + + +A T + + K +
Sbjct: 266 CKIL--LTTRFKQV---TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 47 ------PVIV--------DFFATWCNPCKTLTPRLEAVIDEMKGKVVLAKVDIDELTDLA 92
P + D ATW N +L +I + L ++ E +
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII-----ESSLNVLEPAEYRKM- 374
Query: 93 MDYEVSAV-P--VLIAMK-------NGKELDRLIGLQDI-DKL--KSFIDNLVEKQS 136
++ +V P I + + D + + +KL S LVEKQ
Sbjct: 375 --FDRLSVFPPSAHIPTILLSLIWFDVIKSD----VMVVVNKLHKYS----LVEKQP 421
>1ilo_A Conserved hypothetical protein MTH895;
beta-alpha-beta-alpha-beta-BETA-alpha motif, structural
genomics, PSI; NMR
{Methanothermobacterthermautotrophicus str} SCOP:
c.47.1.1
Length = 77
Score = 27.3 bits (61), Expect = 0.56
Identities = 9/49 (18%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 57 CNPCKTLTPRLEAVIDEMKGKVVLAKV-DIDELTDLAMDYEVSAVPVLI 104
C C+ L + E+ K+ ++D++ ++ ++A+P L
Sbjct: 11 CANCQMLEKNAREAVKELGIDAEFEKIKEMDQI----LEAGLTALPGLA 55
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase,
thermophilic; 2.28A {Thermotoga maritima} SCOP:
a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A
1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A
1vg7_A
Length = 299
Score = 28.4 bits (64), Expect = 0.75
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 101 PVLIAMKNGKELDRLIGLQDIDKLKSFI 128
P++ AM+ E ++ +D L SF+
Sbjct: 231 PLVTAMEKFPEARQMFENRDWSGLMSFM 258
>3l9v_A Putative thiol-disulfide isomerase or thioredoxin;
thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase,
ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A
{Salmonella enterica subsp}
Length = 189
Score = 27.3 bits (59), Expect = 1.6
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 44 ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMK 75
P +V+FF+ +C PC + +
Sbjct: 13 VDAPAVVEFFSFYCPPCYAFSQTMGVDQAIRH 44
>1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold,
hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus
familiaris} SCOP: c.69.1.6 PDB: 1hlg_A*
Length = 377
Score = 27.7 bits (61), Expect = 1.6
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 93 MDYEVSAVPVLIAMKNGKELDRLIGLQDIDKLKSFIDNLVEKQ 135
Y ++ + V IA+ NG D L D+D L S + NL+ +
Sbjct: 305 PYYNLTDMHVPIAVWNGGN-DLLADPHDVDLLLSKLPNLIYHR 346
>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA,
thiol-disulfide oxidoreductase, DISU bond, redox-active
center; 1.58A {Salmonella enterica subsp} PDB: 1a23_A
1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A
1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A*
3e9j_B* 1ac1_A 2b6m_A 2b3s_A
Length = 191
Score = 26.4 bits (57), Expect = 3.5
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 44 ASTPVIVDFFATWCNPCKTLTPRLEAVIDEMK 75
A P +++FF+ +C C L + K
Sbjct: 20 AGEPQVLEFFSFYCPHCYQFEEVLHVSDNVKK 51
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 4.1
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 4/23 (17%)
Query: 119 QDIDKLKSFIDNLVEKQSAVNSP 141
Q + KL++ + L SA P
Sbjct: 20 QALKKLQASL-KLYADDSA---P 38
>1un2_A DSBA, thiol-disulfide interchange protein; disulfide
oxidoreductase, oxidoreductase, protein disulfide
isomerase, protein folding, thioredoxin; 2.4A
{Escherichia coli} SCOP: c.47.1.13
Length = 197
Score = 25.9 bits (56), Expect = 4.7
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 44 ASTPVIVDFFATWCNPCKTLTPRLEA 69
A P +++FF+ +C C L
Sbjct: 112 AGAPQVLEFFSFFCPHCYQFEEVLHI 137
>1t4y_A Adaptive-response sensory-kinase SASA; alpha/beta protein,
thioredoxin fold, transferase; NMR {Synechococcus
elongatus} SCOP: c.47.1.15 PDB: 1t4z_A
Length = 105
Score = 25.4 bits (55), Expect = 5.3
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 9/49 (18%)
Query: 83 VDIDELTDLAMDYEVSAVPVLIAMKNGKEL----DRLIGLQDIDKLKSF 127
+++ + L Y + P L+ K L G+ D+L +
Sbjct: 50 INVADQPQLVEYYRLVVTPALV-----KIGPGSRQVLSGIDLTDQLANQ 93
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase,
ultrahigh resolution, protein transport; 1.10A {Thermus
aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B*
1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B*
2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A
1ffh_A 2ng1_A*
Length = 295
Score = 25.2 bits (56), Expect = 8.9
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 62 TLTPRLEAVIDEMKGKVVLAKVDIDE 87
L+ RL+ I ++G+ + + D+
Sbjct: 4 QLSARLQEAIGRLRGRGRITEEDLKA 29
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.382
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,103,217
Number of extensions: 121917
Number of successful extensions: 571
Number of sequences better than 10.0: 1
Number of HSP's gapped: 497
Number of HSP's successfully gapped: 208
Length of query: 141
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 57
Effective length of database: 4,356,429
Effective search space: 248316453
Effective search space used: 248316453
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.9 bits)